Citrus Sinensis ID: 020875
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 320 | 2.2.26 [Sep-21-2011] | |||||||
| P57106 | 332 | Malate dehydrogenase, cyt | yes | no | 0.943 | 0.909 | 0.933 | 1e-161 | |
| Q08062 | 332 | Malate dehydrogenase, cyt | N/A | no | 0.943 | 0.909 | 0.930 | 1e-161 | |
| P93819 | 332 | Malate dehydrogenase, cyt | no | no | 0.943 | 0.909 | 0.920 | 1e-160 | |
| O24047 | 332 | Malate dehydrogenase, cyt | N/A | no | 0.943 | 0.909 | 0.930 | 1e-160 | |
| O48905 | 332 | Malate dehydrogenase, cyt | N/A | no | 0.943 | 0.909 | 0.923 | 1e-159 | |
| Q7XDC8 | 332 | Malate dehydrogenase, cyt | yes | no | 0.943 | 0.909 | 0.913 | 1e-158 | |
| Q9SML8 | 332 | Malate dehydrogenase, cyt | N/A | no | 0.943 | 0.909 | 0.917 | 1e-157 | |
| P11708 | 334 | Malate dehydrogenase, cyt | yes | no | 0.934 | 0.895 | 0.61 | 1e-103 | |
| P40925 | 334 | Malate dehydrogenase, cyt | yes | no | 0.934 | 0.895 | 0.603 | 1e-103 | |
| O88989 | 334 | Malate dehydrogenase, cyt | yes | no | 0.934 | 0.895 | 0.61 | 1e-102 |
| >sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 282/302 (93%), Positives = 295/302 (97%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEPVRVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDIP AAEALNGVKMELVD
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTDAVEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQ+SE+L+V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHATV T+ GEKPVRELVK+D WLNGEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAASSACDHIRDWV+GTPEGT+VSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV
Sbjct: 241 LSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7 |
| >sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2 | Back alignment and function description |
|---|
Score = 567 bits (1461), Expect = e-161, Method: Compositional matrix adjust.
Identities = 281/302 (93%), Positives = 289/302 (95%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEP+RVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSSSQYPDVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
SSALSAASSACDHIRDWVLGTPEGT+VSMGVYSDGSY VP+GLIYSFPVTC GEW IV
Sbjct: 241 FSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Zea mays (taxid: 4577) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 565 bits (1455), Expect = e-160, Method: Compositional matrix adjust.
Identities = 278/302 (92%), Positives = 296/302 (98%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEPVRVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDIPPAAEALNGVKMEL+D
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTDAVE CTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA+ALE+H
Sbjct: 61 AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+L+V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSSSQYPDVNHA V T++GEKPVRELVKDDAWL+GEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAASSACDHIRDWVLGTPEGT+VSMGVYSDGSY+VP+GLIYSFPVTCRNG+W+IV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 565 bits (1455), Expect = e-160, Method: Compositional matrix adjust.
Identities = 281/302 (93%), Positives = 291/302 (96%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MA EP+RVLVTGAAGQIGYALVPMIARG+MLG +QPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGIMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTDA EAC GVN+AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH
Sbjct: 61 AAFPLLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHATV T +KPVRELV DDAWLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAASSACDHI DWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC+NGEWTIV
Sbjct: 241 LSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Mesembryanthemum crystallinum (taxid: 3544) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 562 bits (1449), Expect = e-159, Method: Compositional matrix adjust.
Identities = 279/302 (92%), Positives = 293/302 (97%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAK+PVRVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDI PAAE+LNGVKMELVD
Sbjct: 1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTD VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AA NCKVLVVANPANTNALILKEFAPSIP +NI+CLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAANCKVLVVANPANTNALILKEFAPSIPERNISCLTRLDHNRALGQISERLNVQVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHATVNT AGEKPVR+LV DDAWLNGEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVNTPAGEKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAAS+ACDHIRDWVLGTP+GT+VSMGVYSDGSYNVP+GLIYSFPVTC NGEW IV
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Medicago sativa (taxid: 3879) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 557 bits (1436), Expect = e-158, Method: Compositional matrix adjust.
Identities = 276/302 (91%), Positives = 287/302 (95%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEP+RVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPA E+LNG+KMELVD
Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKG+VATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE H
Sbjct: 61 AAFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQISEKLNVQV+DVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
N IIWGNHSS+QYPDVNHATV T +GEKPVRELV DD WLN EFI+TVQQRGAAIIKARK
Sbjct: 181 NAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
SSALSAASSACDHIRDWVLGTPEGT+VSMGVYSDGSY VPAGLIYSFPVTC GEWTIV
Sbjct: 241 QSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1426), Expect = e-157, Method: Compositional matrix adjust.
Identities = 277/302 (91%), Positives = 287/302 (95%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MA EP+RVLVTGAAGQIGYALVPMIARGVMLG +QPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGVMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTD EAC GVN+AVMVGGFPRKEGMERKDVM KNVSIYK+QASALEQ+
Sbjct: 61 AAFPLLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQY 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQISE+LN QVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNAQVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSSSQYPDVN TV T +GEK VRELV DDAWLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNPCTVKTGSGEKAVRELVADDAWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC++GEW IV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKDGEWKIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Beta vulgaris (taxid: 161934) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|P11708|MDHC_PIG Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/300 (61%), Positives = 223/300 (74%), Gaps = 1/300 (0%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK V+AT A +++A++VG PR++GMERKD++ NV I+K Q +AL+++A
Sbjct: 63 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 122
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 182
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
IWGNHSS+QYPDVNHA V A E V E VKDD+WL GEFITTVQQRGAA+IKARKLSS
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
A+SAA + CDH+RD GTPEG +VSMG+ SDG SY VP L+YSFPVT ++ W IV+G
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 302
|
Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/300 (60%), Positives = 222/300 (74%), Gaps = 1/300 (0%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK V+AT A +++A++VG PR+EGMERKD++ NV I+K+Q +AL+++A
Sbjct: 63 PLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKK 122
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V +DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVI 182
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
IWGNHSS+QYPDVNHA V E V E +KDD+WL GEF+TTVQQRGAA+IKARKLSS
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSS 242
Query: 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
A+SAA + CDH+RD GTPEG +VSMGV SDG SY VP L+YSFPV +N W V+G
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEG 302
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|O88989|MDHC_RAT Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/300 (61%), Positives = 220/300 (73%), Gaps = 1/300 (0%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLL+ V+AT A +++AV+VG PR+EGMERKD++ NV I+K+Q +ALE++A
Sbjct: 63 PLLQDVIATDKEEVAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGAALEKYAKK 122
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVI 182
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
IWGNHSS+QYPDVNHA V E V E +KDD+WL GEFITTVQQRGAA+IKARKLSS
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
A+SAA + DHIRD GTPEG +VSMGV SDG SY VP L+YSFPV +N W V+G
Sbjct: 243 AMSAAKAISDHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEG 302
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 320 | ||||||
| 211906490 | 332 | malate dehydrogenase [Gossypium hirsutum | 0.943 | 0.909 | 0.963 | 1e-164 | |
| 10798652 | 332 | malate dehydrogenase [Nicotiana tabacum] | 0.943 | 0.909 | 0.947 | 1e-162 | |
| 347516612 | 332 | Cr611 [Catharanthus roseus] | 0.943 | 0.909 | 0.940 | 1e-161 | |
| 224112569 | 332 | predicted protein [Populus trichocarpa] | 0.943 | 0.909 | 0.950 | 1e-161 | |
| 83283965 | 332 | malate dehydrogenase-like protein [Solan | 0.940 | 0.906 | 0.946 | 1e-161 | |
| 224102193 | 332 | predicted protein [Populus trichocarpa] | 0.943 | 0.909 | 0.947 | 1e-160 | |
| 297795089 | 332 | cytosolic malate dehydrogenase [Arabidop | 0.943 | 0.909 | 0.927 | 1e-160 | |
| 328908589 | 332 | cytosolic malate dehydrogenase [Lupinus | 0.943 | 0.909 | 0.937 | 1e-159 | |
| 15239843 | 332 | malate dehydrogenase [Arabidopsis thalia | 0.943 | 0.909 | 0.933 | 1e-159 | |
| 297848670 | 332 | hypothetical protein ARALYDRAFT_470418 [ | 0.943 | 0.909 | 0.927 | 1e-159 |
| >gi|211906490|gb|ACJ11738.1| malate dehydrogenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/302 (96%), Positives = 297/302 (98%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEPVRVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEQH
Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEQH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSSSQYPDVNHATV T +GEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVMTPSGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAAS+ACDHIRDWVLGTPEGTWVSMGVYSDGSYN PAG+IYSFPVTC+NGEWTIV
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNAPAGVIYSFPVTCKNGEWTIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10798652|emb|CAC12826.1| malate dehydrogenase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/302 (94%), Positives = 296/302 (98%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAK+PVRVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTDAVEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKE+APSIP KNI+CLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEYAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSSSQYPDVNHATV T AGEKPVRELV DDAWLNGEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVATPAGEKPVRELVADDAWLNGEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPV C+NGEW+IV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVACKNGEWSIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347516612|gb|AEO99201.1| Cr611 [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 284/302 (94%), Positives = 294/302 (97%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEPVRVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTD EAC GVNIAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALEQ+
Sbjct: 61 AAFPLLKGVVATTDVAEACAGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEQY 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVL VANPANTNALILKEFAPSIPAKN+TCLTRLDHNRALGQISE+LNV VS+VK
Sbjct: 121 AAPNCKVLFVANPANTNALILKEFAPSIPAKNVTCLTRLDHNRALGQISERLNVPVSEVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHATV T+AGEKPVRELVKDD WLNGEFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSAGEKPVRELVKDDEWLNGEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAAS+ACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTC+NGEWT+V
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCKNGEWTVV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112569|ref|XP_002332745.1| predicted protein [Populus trichocarpa] gi|222833073|gb|EEE71550.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 287/302 (95%), Positives = 292/302 (96%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEP RVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1 MAKEPARVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTD VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AA NCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAANCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNVQVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHATV T AGEKPVRELVKDDAWLN EFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTPAGEKPVRELVKDDAWLNAEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAASSACDHI DWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTC+NGEW IV
Sbjct: 241 LSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCQNGEWKIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83283965|gb|ABC01890.1| malate dehydrogenase-like protein [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust.
Identities = 285/301 (94%), Positives = 296/301 (98%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAK+PVRVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTDAVEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQISE+L+VQVSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLSVQVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSSSQYPDVNHATV T AG+KPVRELV DDAWLNGEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVTTPAGDKPVRELVADDAWLNGEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAASSACDHIRDWVLGTPEGT+VSMGVYSDGSYNVPAGLIYSFPVTC+NGEW+IV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCKNGEWSIV 300
Query: 301 Q 301
Q
Sbjct: 301 Q 301
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102193|ref|XP_002312583.1| predicted protein [Populus trichocarpa] gi|118481649|gb|ABK92766.1| unknown [Populus trichocarpa] gi|222852403|gb|EEE89950.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 286/302 (94%), Positives = 291/302 (96%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEPVRVLVTGAAGQIGYALVPMIARGVMLG DQPVILHMLDIPPAAEALNGVKMELVD
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTD VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AA NCKVLVVANPANTNALILKEFAPSI KNITCLTRLDHNRALGQISE+L+VQV DVK
Sbjct: 121 AAANCKVLVVANPANTNALILKEFAPSISEKNITCLTRLDHNRALGQISERLSVQVCDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSSSQYPDVNHATV T AGEKPVRELVKDD WLN EFITTVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVKTPAGEKPVRELVKDDEWLNAEFITTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTC+NGEW IV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCQNGEWKIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297795089|ref|XP_002865429.1| cytosolic malate dehydrogenase [Arabidopsis lyrata subsp. lyrata] gi|297311264|gb|EFH41688.1| cytosolic malate dehydrogenase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust.
Identities = 280/302 (92%), Positives = 296/302 (98%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEPVRVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDIPPAAEALNGVKMEL+D
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTDAVE CTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA+ALE+H
Sbjct: 61 AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQ+SE+L+V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHATV T++GEKPVRELVK+D WLNGEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSSGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAASSACDHIRDWV+GTPEGT+VSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV
Sbjct: 241 LSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|328908589|gb|AEB60994.1| cytosolic malate dehydrogenase [Lupinus angustifolius] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 283/302 (93%), Positives = 293/302 (97%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAK+PVRVLVTGAAGQIGYALVPMIARGVMLG+DQPVILH+LDIPPAAE+LNGVKMELVD
Sbjct: 1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGSDQPVILHLLDIPPAAESLNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AA NCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+LNVQVSDVK
Sbjct: 121 AAANCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSSSQYPDVNHATV T AGEKPVRELV DDAWLN EFI TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVTTPAGEKPVRELVADDAWLNSEFIATVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAAS+ACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVT +NGEW IV
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTTQNGEWKIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Source: Lupinus angustifolius Species: Lupinus angustifolius Genus: Lupinus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239843|ref|NP_199147.1| malate dehydrogenase [Arabidopsis thaliana] gi|11133446|sp|P57106.1|MDHC2_ARATH RecName: Full=Malate dehydrogenase, cytoplasmic 2 gi|8843886|dbj|BAA97412.1| cytosolic malate dehydrogenase [Arabidopsis thaliana] gi|18175963|gb|AAL59959.1| putative cytosolic malate dehydrogenase [Arabidopsis thaliana] gi|20259605|gb|AAM14159.1| putative cytosolic malate dehydrogenase [Arabidopsis thaliana] gi|332007563|gb|AED94946.1| malate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 282/302 (93%), Positives = 295/302 (97%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEPVRVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDIP AAEALNGVKMELVD
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTDAVEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQ+SE+L+V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHATV T+ GEKPVRELVK+D WLNGEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAASSACDHIRDWV+GTPEGT+VSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV
Sbjct: 241 LSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848670|ref|XP_002892216.1| hypothetical protein ARALYDRAFT_470418 [Arabidopsis lyrata subsp. lyrata] gi|297338058|gb|EFH68475.1| hypothetical protein ARALYDRAFT_470418 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 280/302 (92%), Positives = 295/302 (97%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEPVRVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDIPPAAEALNGVKMEL+D
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTDAVE CTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA+ALE+H
Sbjct: 61 AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+L+V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSSSQYPDVNHA V T +GEKPVRELVKDDAWL+GEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHAKVQTTSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARK 240
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
LSSALSAASSACDHIRDWVLGTPEGT+VSMGVYSDGSYNVP+GLIYSFPVTCRNGEW+IV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYNVPSGLIYSFPVTCRNGEWSIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 320 | ||||||
| TAIR|locus:2176441 | 332 | c-NAD-MDH2 "cytosolic-NAD-depe | 0.943 | 0.909 | 0.897 | 6.6e-145 | |
| TAIR|locus:2018244 | 332 | c-NAD-MDH1 "cytosolic-NAD-depe | 0.943 | 0.909 | 0.884 | 5.9e-144 | |
| TAIR|locus:2165066 | 339 | c-NAD-MDH3 "cytosolic-NAD-depe | 0.937 | 0.884 | 0.713 | 9.8e-119 | |
| DICTYBASE|DDB_G0280255 | 333 | mdhC "malate dehydrogenase" [D | 0.943 | 0.906 | 0.559 | 8.3e-90 | |
| UNIPROTKB|P11708 | 334 | MDH1 "Malate dehydrogenase, cy | 0.934 | 0.895 | 0.586 | 1.4e-89 | |
| UNIPROTKB|P40925 | 334 | MDH1 "Malate dehydrogenase, cy | 0.934 | 0.895 | 0.58 | 3.6e-89 | |
| UNIPROTKB|Q3T145 | 334 | MDH1 "Malate dehydrogenase, cy | 0.934 | 0.895 | 0.573 | 1.2e-88 | |
| MGI|MGI:97051 | 334 | Mdh1 "malate dehydrogenase 1, | 0.934 | 0.895 | 0.586 | 2.5e-88 | |
| RGD|3072 | 334 | Mdh1 "malate dehydrogenase 1, | 0.934 | 0.895 | 0.586 | 2.5e-88 | |
| UNIPROTKB|E2QV08 | 348 | MDH1 "Malate dehydrogenase" [C | 0.934 | 0.859 | 0.573 | 4.1e-88 |
| TAIR|locus:2176441 c-NAD-MDH2 "cytosolic-NAD-dependent malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1416 (503.5 bits), Expect = 6.6e-145, P = 6.6e-145
Identities = 271/302 (89%), Positives = 284/302 (94%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEPVRVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDIP AAEALNGVKMELVD
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTDAVEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H
Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQ+SE+L+V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPDVNHATV T+ GEKPVRELVK+D WLNGEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARK 240
Query: 241 XXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
CDHIRDWV+GTPEGT+VSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV
Sbjct: 241 LSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
|
| TAIR|locus:2018244 c-NAD-MDH1 "cytosolic-NAD-dependent malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1407 (500.3 bits), Expect = 5.9e-144, P = 5.9e-144
Identities = 267/302 (88%), Positives = 285/302 (94%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
MAKEPVRVLVTGAAGQIGYALVPMIARG+MLG DQPVILHMLDIPPAAEALNGVKMEL+D
Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
AAFPLLKGVVATTDAVE CTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA+ALE+H
Sbjct: 61 AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
AAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+L+V VSDVK
Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVK 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSSSQYPDVNHA V T++GEKPVRELVKDDAWL+GEFI+TVQQRGAAIIKARK
Sbjct: 181 NVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARK 240
Query: 241 XXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
CDHIRDWVLGTPEGT+VSMGVYSDGSY+VP+GLIYSFPVTCRNG+W+IV
Sbjct: 241 LSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
|
| TAIR|locus:2165066 c-NAD-MDH3 "cytosolic-NAD-dependent malate dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
Identities = 214/300 (71%), Positives = 250/300 (83%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K+P+RVL+TGAAG IGYA+ PMIARG+MLG DQP+ILH+LDI PA+ +L VKMEL D+A
Sbjct: 9 KDPIRVLITGAAGNIGYAIAPMIARGIMLGPDQPMILHLLDIEPASSSLEAVKMELQDSA 68
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
FPLLKGV+ATT+ VEAC VNI +M+GGFPR GMERKDVMSKNV IYKAQASALE++A+
Sbjct: 69 FPLLKGVIATTNVVEACKDVNIVIMIGGFPRIAGMERKDVMSKNVVIYKAQASALERYAS 128
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
+CKVLVVANPANTNALILKEFAPSIP +NITCLTRLDHNRAL Q+++KL+V VS VKNV
Sbjct: 129 DDCKVLVVANPANTNALILKEFAPSIPEENITCLTRLDHNRALAQLADKLSVPVSSVKNV 188
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXX 242
I+WGNHSS+QYPD NHATV+T G++P++ELV D WL EFI VQQRGAA+++ARK
Sbjct: 189 IVWGNHSSTQYPDTNHATVSTKTGDRPLKELVTDHNWLKNEFIVEVQQRGAAVLRARKQS 248
Query: 243 XXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
CDHIRDW LGTP+GTWVSMGV SDGSY +P GL+YSFPV C G W IVQG
Sbjct: 249 SAFSAAGAACDHIRDWFLGTPKGTWVSMGVCSDGSYGIPPGLVYSFPVICEKGSWKIVQG 308
|
|
| DICTYBASE|DDB_G0280255 mdhC "malate dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
Identities = 169/302 (55%), Positives = 211/302 (69%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
M+ E + VL+TGAAGQI Y+L+ + +G M G DQ + LH+LDIP ++L G+ ME+ D
Sbjct: 1 MSNEVINVLITGAAGQIAYSLIFNVCKGDMFGLDQRIKLHLLDIPQMVDSLKGIVMEIQD 60
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
A+PL+ V T D EA TGV+ A++VG PR+EGMER D++ N +I+K Q AL +H
Sbjct: 61 GAYPLIADTVITADVKEAFTGVHYAILVGAMPRREGMERADLLKANAAIFKVQGKALAEH 120
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
A N KVLVV NPANTNALI + A IP +N TCLTRLD NRA QI+ K V V DV
Sbjct: 121 ANKNVKVLVVGNPANTNALIAQVSANGIPKENFTCLTRLDQNRAKSQIALKAGVNVKDVH 180
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NVIIWGNHSS+QYPD +N + G+ P+ +KD+ WL GEFI+TVQ+RGAA+I ARK
Sbjct: 181 NVIIWGNHSSTQYPDYRCGYINLSTGKTPISTAIKDEKWLQGEFISTVQKRGAAVIAARK 240
Query: 241 XXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIV 300
DH+ DWVLGT EG +VSMGVYSDGSY VP GLI+SFPV C NG++TIV
Sbjct: 241 LSSAASAAKAITDHMHDWVLGTAEGEYVSMGVYSDGSYGVPEGLIFSFPVKCANGKYTIV 300
Query: 301 QG 302
QG
Sbjct: 301 QG 302
|
|
| UNIPROTKB|P11708 MDH1 "Malate dehydrogenase, cytoplasmic" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
Identities = 176/300 (58%), Positives = 214/300 (71%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK V+AT A +++A++VG PR++GMERKD++ NV I+K Q +AL+++A
Sbjct: 63 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 122
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 182
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
IWGNHSS+QYPDVNHA V A E V E VKDD+WL GEFITTVQQRGAA+IKARK
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 244 XXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
CDH+RD GTPEG +VSMG+ SDG SY VP L+YSFPVT ++ W IV+G
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 302
|
|
| UNIPROTKB|P40925 MDH1 "Malate dehydrogenase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 174/300 (58%), Positives = 213/300 (71%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK V+AT A +++A++VG PR+EGMERKD++ NV I+K+Q +AL+++A
Sbjct: 63 PLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKK 122
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V +DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVI 182
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
IWGNHSS+QYPDVNHA V E V E +KDD+WL GEF+TTVQQRGAA+IKARK
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSS 242
Query: 244 XXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
CDH+RD GTPEG +VSMGV SDG SY VP L+YSFPV +N W V+G
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEG 302
|
|
| UNIPROTKB|Q3T145 MDH1 "Malate dehydrogenase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 172/300 (57%), Positives = 213/300 (71%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK V+AT A +++A++VG PR++GMERKD++ NV I+K Q +AL+++A
Sbjct: 63 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 122
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 182
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
IWGNHSS+QYPDVNHA V E V E +KDD+WL GEFITTVQQRGAA+IKARK
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 244 XXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
CDH+RD GTPEG +VSMG+ SDG SY +P L+YSFPVT ++ W +V+G
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEG 302
|
|
| MGI|MGI:97051 Mdh1 "malate dehydrogenase 1, NAD (soluble)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 176/300 (58%), Positives = 211/300 (70%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLL+ V+AT A +++AV+VG PR+EGMERKD++ NV I+K+Q +ALE++A
Sbjct: 63 PLLQDVIATDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGTALEKYAKK 122
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVI 182
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
IWGNHSS+QYPDVNHA V E V E +KDD+WL GEFITTVQQRGAA+IKARK
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 244 XXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
DHIRD GTPEG +VSMGV SDG SY VP L+YSFPV +N W V+G
Sbjct: 243 AMSAAKAIADHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEG 302
|
|
| RGD|3072 Mdh1 "malate dehydrogenase 1, NAD (soluble)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 176/300 (58%), Positives = 211/300 (70%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLL+ V+AT A +++AV+VG PR+EGMERKD++ NV I+K+Q +ALE++A
Sbjct: 63 PLLQDVIATDKEEVAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGAALEKYAKK 122
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVI 182
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
IWGNHSS+QYPDVNHA V E V E +KDD+WL GEFITTVQQRGAA+IKARK
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 244 XXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
DHIRD GTPEG +VSMGV SDG SY VP L+YSFPV +N W V+G
Sbjct: 243 AMSAAKAISDHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEG 302
|
|
| UNIPROTKB|E2QV08 MDH1 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 172/300 (57%), Positives = 213/300 (71%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 17 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 76
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK V+AT A +++A++VG PR++GMERKD++ NV I+K Q +ALE++A
Sbjct: 77 PLLKDVIATDKEDVAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALEKYAKK 136
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V DVKNVI
Sbjct: 137 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 196
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXX 243
IWGNHSS+QYPDV+HA V E V + +KD++WL GEFITTVQQRGAA+IKARK
Sbjct: 197 IWGNHSSTQYPDVSHAKVKLQGKEVGVYDALKDESWLKGEFITTVQQRGAAVIKARKLSS 256
Query: 244 XXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCRNGEWTIVQG 302
CDH+RD GTPEG +VSMG+ SDG+ Y VP L+YSFPVT +N W IV+G
Sbjct: 257 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNPYGVPDDLLYSFPVTIKNKTWKIVEG 316
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A9IIS3 | MDH_BORPD | 1, ., 1, ., 1, ., 3, 7 | 0.5490 | 0.9343 | 0.9088 | yes | no |
| O48905 | MDHC_MEDSA | 1, ., 1, ., 1, ., 3, 7 | 0.9238 | 0.9437 | 0.9096 | N/A | no |
| P50917 | MDH_MYCLE | 1, ., 1, ., 1, ., 3, 7 | 0.5430 | 0.9312 | 0.9057 | yes | no |
| Q0VQ52 | MDH_ALCBS | 1, ., 1, ., 1, ., 3, 7 | 0.5761 | 0.9281 | 0.9054 | yes | no |
| Q9RXI8 | MDH_DEIRA | 1, ., 1, ., 1, ., 3, 7 | 0.5794 | 0.9281 | 0.9 | yes | no |
| A4FFX3 | MDH_SACEN | 1, ., 1, ., 1, ., 3, 7 | 0.5562 | 0.9281 | 0.9054 | yes | no |
| O88989 | MDHC_RAT | 1, ., 1, ., 1, ., 3, 7 | 0.61 | 0.9343 | 0.8952 | yes | no |
| O24047 | MDHC_MESCR | 1, ., 1, ., 1, ., 3, 7 | 0.9304 | 0.9437 | 0.9096 | N/A | no |
| Q7NZ60 | MDH_CHRVO | 1, ., 1, ., 1, ., 3, 7 | 0.5496 | 0.9281 | 0.9110 | yes | no |
| Q0ABE6 | MDH_ALHEH | 1, ., 1, ., 1, ., 3, 7 | 0.5752 | 0.9187 | 0.9018 | yes | no |
| Q0AFK6 | MDH_NITEC | 1, ., 1, ., 1, ., 3, 7 | 0.5333 | 0.925 | 0.9051 | yes | no |
| Q21K60 | MDH_SACD2 | 1, ., 1, ., 1, ., 3, 7 | 0.5733 | 0.9218 | 0.9021 | yes | no |
| Q54VM2 | MDHC_DICDI | 1, ., 1, ., 1, ., 3, 7 | 0.5827 | 0.9437 | 0.9069 | yes | no |
| Q5ZME2 | MDHC_CHICK | 1, ., 1, ., 1, ., 3, 7 | 0.5933 | 0.9343 | 0.8952 | yes | no |
| A1R2B5 | MDH_ARTAT | 1, ., 1, ., 1, ., 3, 7 | 0.5402 | 0.9187 | 0.8963 | yes | no |
| Q6DIY9 | MDHC_XENTR | 1, ., 1, ., 1, ., 3, 7 | 0.6033 | 0.9343 | 0.8952 | yes | no |
| A1K5Q9 | MDH_AZOSB | 1, ., 1, ., 1, ., 3, 7 | 0.5504 | 0.9343 | 0.9060 | yes | no |
| A1WV94 | MDH_HALHL | 1, ., 1, ., 1, ., 3, 7 | 0.5633 | 0.9218 | 0.9049 | yes | no |
| Q1Q932 | MDH_PSYCK | 1, ., 1, ., 1, ., 3, 7 | 0.5860 | 0.9281 | 0.9027 | yes | no |
| Q82WB9 | MDH_NITEU | 1, ., 1, ., 1, ., 3, 7 | 0.51 | 0.925 | 0.9051 | yes | no |
| Q08062 | MDHC_MAIZE | 1, ., 1, ., 1, ., 3, 7 | 0.9304 | 0.9437 | 0.9096 | N/A | no |
| B3PHI3 | MDH_CELJU | 1, ., 1, ., 1, ., 3, 7 | 0.5728 | 0.9281 | 0.9082 | yes | no |
| P93819 | MDHC1_ARATH | 1, ., 1, ., 1, ., 3, 7 | 0.9205 | 0.9437 | 0.9096 | no | no |
| P14152 | MDHC_MOUSE | 1, ., 1, ., 1, ., 3, 7 | 0.61 | 0.9343 | 0.8952 | yes | no |
| P0A5J6 | MDH_MYCTU | 1, ., 1, ., 1, ., 3, 7 | 0.5463 | 0.9312 | 0.9057 | yes | no |
| Q47TT4 | MDH_THEFY | 1, ., 1, ., 1, ., 3, 7 | 0.5756 | 0.9375 | 0.9090 | yes | no |
| Q6PAB3 | MDHC_XENLA | 1, ., 1, ., 1, ., 3, 7 | 0.5966 | 0.9343 | 0.8952 | N/A | no |
| Q7VW97 | MDH_BORPE | 1, ., 1, ., 1, ., 3, 7 | 0.5544 | 0.925 | 0.8996 | yes | no |
| A5WGM2 | MDH_PSYWF | 1, ., 1, ., 1, ., 3, 7 | 0.5695 | 0.9281 | 0.9082 | yes | no |
| B1XV63 | MDH_POLNS | 1, ., 1, ., 1, ., 3, 7 | 0.5457 | 0.9343 | 0.9088 | yes | no |
| Q7XDC8 | MDHC_ORYSJ | 1, ., 1, ., 1, ., 3, 7 | 0.9139 | 0.9437 | 0.9096 | yes | no |
| C5BU70 | MDH_TERTT | 1, ., 1, ., 1, ., 3, 7 | 0.5766 | 0.9218 | 0.9021 | yes | no |
| P57106 | MDHC2_ARATH | 1, ., 1, ., 1, ., 3, 7 | 0.9337 | 0.9437 | 0.9096 | yes | no |
| Q7YRU4 | MDHC_FELCA | 1, ., 1, ., 1, ., 3, 7 | 0.5966 | 0.9343 | 0.8952 | N/A | no |
| P11708 | MDHC_PIG | 1, ., 1, ., 1, ., 3, 7 | 0.61 | 0.9343 | 0.8952 | yes | no |
| C1CY73 | MDH_DEIDV | 1, ., 1, ., 1, ., 3, 7 | 0.5728 | 0.9281 | 0.9 | yes | no |
| Q3T145 | MDHC_BOVIN | 1, ., 1, ., 1, ., 3, 7 | 0.5966 | 0.9343 | 0.8952 | yes | no |
| P40925 | MDHC_HUMAN | 1, ., 1, ., 1, ., 3, 7 | 0.6033 | 0.9343 | 0.8952 | yes | no |
| Q7W5Q8 | MDH_BORPA | 1, ., 1, ., 1, ., 3, 7 | 0.5544 | 0.925 | 0.8996 | yes | no |
| Q2L068 | MDH_BORA1 | 1, ., 1, ., 1, ., 3, 7 | 0.5511 | 0.925 | 0.8996 | yes | no |
| Q7WD94 | MDH_BORBR | 1, ., 1, ., 1, ., 3, 7 | 0.5544 | 0.925 | 0.8996 | yes | no |
| B1W3N4 | MDH_STRGG | 1, ., 1, ., 1, ., 3, 7 | 0.5460 | 0.9375 | 0.9118 | yes | no |
| Q9SML8 | MDHC_BETVU | 1, ., 1, ., 1, ., 3, 7 | 0.9172 | 0.9437 | 0.9096 | N/A | no |
| Q04820 | MDHC_ECHGR | 1, ., 1, ., 1, ., 3, 7 | 0.5351 | 0.9312 | 0.8975 | N/A | no |
| A4SWW0 | MDH_POLSQ | 1, ., 1, ., 1, ., 3, 7 | 0.5490 | 0.9343 | 0.9088 | yes | no |
| Q82HS2 | MDH_STRAW | 1, ., 1, ., 1, ., 3, 7 | 0.5496 | 0.9312 | 0.9057 | yes | no |
| Q4FQU7 | MDH_PSYA2 | 1, ., 1, ., 1, ., 3, 7 | 0.5794 | 0.9281 | 0.9027 | yes | no |
| Q1IWC9 | MDH_DEIGD | 1, ., 1, ., 1, ., 3, 7 | 0.5794 | 0.9281 | 0.8892 | yes | no |
| Q9K3J3 | MDH_STRCO | 1, ., 1, ., 1, ., 3, 7 | 0.5625 | 0.9375 | 0.9118 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.998 |
| 3rd Layer | 1.1.1.37 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 320 | |||
| PLN00135 | 309 | PLN00135, PLN00135, malate dehydrogenase | 0.0 | |
| cd01336 | 325 | cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an | 0.0 | |
| TIGR01758 | 324 | TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD- | 0.0 | |
| TIGR01759 | 323 | TIGR01759, MalateDH-SF1, malate dehydrogenase | 0.0 | |
| PRK05442 | 326 | PRK05442, PRK05442, malate dehydrogenase; Provisio | 1e-176 | |
| cd01338 | 322 | cd01338, MDH_choloroplast_like, Chloroplast-like m | 1e-165 | |
| cd00704 | 323 | cd00704, MDH, Malate dehydrogenase | 1e-164 | |
| PLN00112 | 444 | PLN00112, PLN00112, malate dehydrogenase (NADP); P | 9e-94 | |
| TIGR01757 | 387 | TIGR01757, Malate-DH_plant, malate dehydrogenase, | 5e-87 | |
| TIGR01756 | 313 | TIGR01756, LDH_protist, lactate dehydrogenase | 2e-82 | |
| cd05295 | 452 | cd05295, MDH_like, Malate dehydrogenase-like | 6e-82 | |
| COG0039 | 313 | COG0039, Mdh, Malate/lactate dehydrogenases [Energ | 2e-69 | |
| cd00650 | 263 | cd00650, LDH_MDH_like, NAD-dependent, lactate dehy | 4e-53 | |
| pfam02866 | 173 | pfam02866, Ldh_1_C, lactate/malate dehydrogenase, | 3e-42 | |
| pfam00056 | 142 | pfam00056, Ldh_1_N, lactate/malate dehydrogenase, | 7e-37 | |
| cd01339 | 300 | cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik | 3e-17 | |
| PTZ00117 | 319 | PTZ00117, PTZ00117, malate dehydrogenase; Provisio | 1e-15 | |
| cd05294 | 309 | cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas | 6e-15 | |
| PRK06223 | 307 | PRK06223, PRK06223, malate dehydrogenase; Reviewed | 7e-15 | |
| cd00300 | 300 | cd00300, LDH_like, L-lactate dehydrogenase-like en | 8e-14 | |
| TIGR01772 | 312 | TIGR01772, MDH_euk_gproteo, malate dehydrogenase, | 6e-12 | |
| cd01337 | 310 | cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma | 2e-11 | |
| TIGR01763 | 305 | TIGR01763, MalateDH_bact, malate dehydrogenase, NA | 1e-09 | |
| cd05293 | 312 | cd05293, LDH_1, A subgroup of L-lactate dehydrogen | 2e-09 | |
| PRK05086 | 312 | PRK05086, PRK05086, malate dehydrogenase; Provisio | 5e-09 | |
| PTZ00082 | 321 | PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi | 7e-09 | |
| PLN00106 | 323 | PLN00106, PLN00106, malate dehydrogenase | 2e-08 | |
| PRK00066 | 315 | PRK00066, ldh, L-lactate dehydrogenase; Reviewed | 2e-07 | |
| TIGR01771 | 299 | TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | 3e-07 | |
| PLN02602 | 350 | PLN02602, PLN02602, lactate dehydrogenase | 3e-06 | |
| PTZ00325 | 321 | PTZ00325, PTZ00325, malate dehydrogenase; Provisio | 4e-06 | |
| cd05292 | 308 | cd05292, LDH_2, A subgroup of L-lactate dehydrogen | 2e-04 | |
| cd05291 | 306 | cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd | 4e-04 |
| >gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 614 bits (1585), Expect = 0.0
Identities = 258/279 (92%), Positives = 266/279 (95%)
Query: 24 MIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83
MIARGVMLG DQPVILHMLDIPPAAEALNGVKMEL+DAAFPLLKGVVATTD VEAC GVN
Sbjct: 1 MIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVN 60
Query: 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE 143
IAVMVGGFPRKEGMERKDVMSKNVSIYK+QASALE+HAAP+CKVLVVANPANTNALILKE
Sbjct: 61 IAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKE 120
Query: 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNT 203
FAPSIP KNITCLTRLDHNRALGQISE+L V VSDVKNVIIWGNHSS+QYPDVNHATV T
Sbjct: 121 FAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHATVKT 180
Query: 204 AAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 263
+GEKPVRELV DDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP
Sbjct: 181 PSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240
Query: 264 EGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
EGTWVSMGVYSDGSY VP GLIYSFPVTC GEW+IVQG
Sbjct: 241 EGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQG 279
|
Length = 309 |
| >gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Score = 602 bits (1554), Expect = 0.0
Identities = 214/299 (71%), Positives = 246/299 (82%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+PMIA+G + G DQPVILH+LDIPPA +AL GV MEL D AF
Sbjct: 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAF 60
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK VVATTD EA V++A++VG PRKEGMERKD++ NV I+K Q AL+++A
Sbjct: 61 PLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKK 120
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
N KVLVV NPANTNALIL ++APSIP +N T LTRLDHNRA QI+ KL V VSDVKNVI
Sbjct: 121 NVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKNVI 180
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
IWGNHSS+QYPDVNHATV KP RE VKDDAWLNGEFI+TVQ+RGAA+IKARKLSS
Sbjct: 181 IWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARKLSS 240
Query: 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
A+SAA + CDH+ DW GTPEG +VSMGVYSDGSY VP GLI+SFPVTC+NG+W IVQG
Sbjct: 241 AMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQG 299
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325 |
| >gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 537 bits (1384), Expect = 0.0
Identities = 215/297 (72%), Positives = 250/297 (84%), Gaps = 1/297 (0%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
RV+VTGAAGQIGYAL+PMIARG MLG DQP+ILH+LDIPPA + L GV MEL+D AFPLL
Sbjct: 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL 60
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
GVV T D A T V++A++VG FPRKEGMER+D++SKNV I+K Q AL++ A +CK
Sbjct: 61 DGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCK 120
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186
VLVV NPANTNAL+L +APSIP KN + LTRLDHNRAL Q++E+ V VSDVKNVIIWG
Sbjct: 121 VLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWG 180
Query: 187 NHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALS 246
NHSS+QYPDVNHATV +KPVRE +KDDA+L+GEFITTVQQRGAAII+ARKLSSALS
Sbjct: 181 NHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLSSALS 240
Query: 247 AASSACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCRNGEWTIVQG 302
AA +A D + DWVLGTPEGT+VSMGVYSDGS Y VP GLI+SFPVTC+NGEW IV+G
Sbjct: 241 AAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEG 297
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324 |
| >gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 511 bits (1317), Expect = 0.0
Identities = 195/302 (64%), Positives = 231/302 (76%), Gaps = 6/302 (1%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K+PVRV VTGAAGQIGY+L+ IA G + G DQPV+LH+LDIPPA +AL GV MEL D A
Sbjct: 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA 60
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
FPLL GVVATTD EA V+ A++VG FPRK GMER D++SKN I+K Q AL + A
Sbjct: 61 FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
+ KVLVV NPANTNALI + AP IP KN + +TRLDHNRA Q++ K V VSDVKNV
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNV 180
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242
IIWGNHS++Q PD HATV +PV+E++KDD WL GEFI TVQQRGAA+I+AR S
Sbjct: 181 IIWGNHSNTQVPDFTHATV----DGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGAS 236
Query: 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTC-RNGEWTIV 300
SA SAA++A DH+RDWV GTPEG WVSMGVYSDG Y +P G+I+SFPVTC +GEW IV
Sbjct: 237 SAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIV 296
Query: 301 QG 302
+G
Sbjct: 297 EG 298
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323 |
| >gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 489 bits (1262), Expect = e-176
Identities = 184/301 (61%), Positives = 223/301 (74%), Gaps = 4/301 (1%)
Query: 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA 61
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+IPPA +AL GV MEL D
Sbjct: 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDC 60
Query: 62 AFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121
AFPLL GVV T D A ++A++VG PR GMERKD++ N +I+ AQ AL + A
Sbjct: 61 AFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVA 120
Query: 122 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181
A + KVLVV NPANTNALI + AP +PA+N T +TRLDHNRAL Q++ K V V+D+K
Sbjct: 121 ARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKK 180
Query: 182 VIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKL 241
+ +WGNHS++QYPD HAT++ KP E++ D AWL FI TVQ+RGAAII+AR
Sbjct: 181 MTVWGNHSATQYPDFRHATIDG----KPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGA 236
Query: 242 SSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQ 301
SSA SAA++A DH+RDWVLGTPEG WVSMGV SDGSY +P GLI+ FPVTC NGE+ IVQ
Sbjct: 237 SSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCENGEYEIVQ 296
Query: 302 G 302
G
Sbjct: 297 G 297
|
Length = 326 |
| >gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Score = 462 bits (1191), Expect = e-165
Identities = 173/299 (57%), Positives = 211/299 (70%), Gaps = 4/299 (1%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
+PVRV VTGAAGQIGY+L+ IA G M G DQPVIL +L++P A +AL GV MEL D AF
Sbjct: 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF 60
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLL +V T D A + A++VG PR GMER D++ N I+ AQ AL A+
Sbjct: 61 PLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASR 120
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KVLVV NP NTNALI + AP IP N T +TRLDHNRA Q+++K V V+DVKN++
Sbjct: 121 DVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMV 180
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
IWGNHS +QYPD +AT+ G KP E++ D AWL EFI TVQ+RGAAIIKAR SS
Sbjct: 181 IWGNHSPTQYPDFTNATI----GGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASS 236
Query: 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
A SAA++A DH+RDWVLGTPEG W SM V SDGSY +P GLI+SFPV + G + IV+G
Sbjct: 237 AASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEG 295
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322 |
| >gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase | Back alignment and domain information |
|---|
Score = 460 bits (1185), Expect = e-164
Identities = 177/298 (59%), Positives = 219/298 (73%), Gaps = 2/298 (0%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
+ VL+TGAAGQIGY L+ +IA G + G DQPVILH+LDIPPA +AL GV MEL D AFPL
Sbjct: 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL 60
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
LKGVV TTD EA V++A++VG FPRK GMER D++ KN I+K Q AL + A P
Sbjct: 61 LKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTV 120
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIW 185
KVLVV NPANTNALI + AP++P KN T LTRLDHNRA Q++ KL V+VSDVKNVIIW
Sbjct: 121 KVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIW 180
Query: 186 GNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSAL 245
GNHS++Q PD+++A V G + V + D+ WLN EF+ TVQ+RGAAIIK R SSA
Sbjct: 181 GNHSNTQVPDLSNAVVYGPGGTEWV-LDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAA 239
Query: 246 SAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
SAA + DH++DW+ GTP G VSMGVYS G Y +P G+++SFP TC+ G W +V+
Sbjct: 240 SAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVED 297
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323 |
| >gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Score = 285 bits (730), Expect = 9e-94
Identities = 134/304 (44%), Positives = 178/304 (58%), Gaps = 10/304 (3%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K+ + V V+GAAG I L+ +A G + G DQP+ L +L + +AL GV MEL D+
Sbjct: 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSL 157
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
+PLL+ V D E A+++G PR GMER D++ N I+ Q AL + A+
Sbjct: 158 YPLLREVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVAS 217
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
N KV+VV NP NTNALI + AP+IPAKN LTRLD NRA Q++ K V V NV
Sbjct: 218 RNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 277
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242
IWGNHS++Q PD +N PV+E++ D WL EF VQ+RG +IK S
Sbjct: 278 TIWGNHSTTQVPDF----LNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKWGRS 333
Query: 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWT 298
SA S A S D I+ V TPEG W S GVY+DG+ Y + GL++S P CR +G++
Sbjct: 334 SAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMP--CRSKGDGDYE 391
Query: 299 IVQG 302
IV+
Sbjct: 392 IVKD 395
|
Length = 444 |
| >gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 5e-87
Identities = 139/304 (45%), Positives = 182/304 (59%), Gaps = 10/304 (3%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K+ V V V+GAAG I L+ M+A G + G DQP+ L +L + EAL GV MEL D+
Sbjct: 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSL 101
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
+PLL+ V D E + A+++G PR GMER D++ N I+ Q AL A+
Sbjct: 102 YPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVAS 161
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
NCKVLVV NP NTNALI + AP+IP KN LTRLD NRA Q++ K + V NV
Sbjct: 162 KNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNV 221
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242
IWGNHS++Q PD VN G +P +E++KD WL EF TVQ+RG A+IK S
Sbjct: 222 TIWGNHSTTQVPDF----VNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGRS 277
Query: 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWT 298
SA S A S D I+ V+ TPEG W S GVY+DG+ Y + GL++S P CR +G++
Sbjct: 278 SAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIAEGLVFSMP--CRSKGDGDYE 335
Query: 299 IVQG 302
+
Sbjct: 336 LATD 339
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387 |
| >gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 252 bits (644), Expect = 2e-82
Identities = 106/281 (37%), Positives = 158/281 (56%), Gaps = 5/281 (1%)
Query: 25 IARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84
IA G + G ++PV LH+L+IPPA L + MEL D AFP L G + TT EA ++
Sbjct: 5 IANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDC 63
Query: 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144
A +V P K G R D+++KN I+KA AL ++A P KVLV+ NP NTN L+
Sbjct: 64 AFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLH 123
Query: 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTA 204
AP + A+N + L LDHNRA+ +I+ KL V V + +V++WGNH+ S D+ HA
Sbjct: 124 APKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAEFTKN 183
Query: 205 AGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPE 264
+ V + + D + +F + QR I++ R +SA S ++ H++ W+ GT
Sbjct: 184 GKHQKVFDELCRD-YPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRP 242
Query: 265 GTWVSMG--VYSDGSYNVPAGLIYSFPVTC-RNGEWTIVQG 302
G +SMG V Y + G+I+SFP T +G+ +V+
Sbjct: 243 GEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVEN 283
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313 |
| >gnl|CDD|133431 cd05295, MDH_like, Malate dehydrogenase-like | Back alignment and domain information |
|---|
Score = 254 bits (652), Expect = 6e-82
Identities = 106/307 (34%), Positives = 169/307 (55%), Gaps = 13/307 (4%)
Query: 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
P++V +T A+ + Y L+P +A G + G ++ + +H+LD P E L G+ ME+ D AFP
Sbjct: 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFP 182
Query: 65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
LL+G+ TTD A ++ V++ F KEG + + + V+I + +E++A +
Sbjct: 183 LLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKED 242
Query: 125 CKVLVVA-NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
KV+V N IL ++APSIP KNI + RL NRA ++ KLNV + +K+VI
Sbjct: 243 VKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVI 302
Query: 184 IWGNHSSSQYPDVNHATVNTAAG--------EKPVRELVKDDAWLNGEFITTVQQRGAAI 235
+WGN + Y D++ A V +PV ELV D W+NGEF+ T++ +
Sbjct: 303 VWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLSS-- 360
Query: 236 IKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNG 295
+ +A+S A + + W G+P G S+GV S+G Y +P G+++S PV +NG
Sbjct: 361 --SLNHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNG 418
Query: 296 EWTIVQG 302
W +V
Sbjct: 419 SWEVVTD 425
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 452 |
| >gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 2e-69
Identities = 95/298 (31%), Positives = 140/298 (46%), Gaps = 20/298 (6%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
++V V GA G +G +L ++ LG++ L ++DI E GV ++L AA PL
Sbjct: 1 MKVAVIGA-GNVGSSLAFLLLLQ-GLGSE----LVLIDINE--EKAEGVALDLSHAAAPL 52
Query: 66 LKGVVATTDA-VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
V T D E G +I V+ G PRK GM R D++ KN I K A A+ ++A P+
Sbjct: 53 GSDVKITGDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PD 111
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVII 184
VLVV NP + I +F+ + I T LD R ++EKL V DV +I
Sbjct: 112 AIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVI 171
Query: 185 WGNHSSSQYPDVNHATVNTAAGEKPVRELVK-DDAWLNGEFITTVQQRGAAIIKARKLSS 243
G H + P + ATV G KP+ EL+K D E I V+ GA II+A+ +
Sbjct: 172 -GEHGDTMVPLWSQATV----GGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAGT 226
Query: 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVT-CRNGEWTIV 300
A++ + + E + + VY DG Y + + P +NG I+
Sbjct: 227 YYGPAAALARMVEAILRD--EKRVLPVSVYLDGEYG-VEDVYFGVPAVLGKNGVEEIL 281
|
Length = 313 |
| >gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 4e-53
Identities = 77/292 (26%), Positives = 118/292 (40%), Gaps = 57/292 (19%)
Query: 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-L 66
+ V GA G +G AL +A G + L + DI E L GV M+L DA PL
Sbjct: 1 IAVIGAGGNVGPALAFGLADG---SVLLAIELVLYDIDE--EKLKGVAMDLQDAVEPLAD 55
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
V T D EA ++ ++ G RK GM R D++ +NV I K +E++ +P+
Sbjct: 56 IKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAW 114
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186
++VV+NP + ++ ++ +P + + L LD R ++EKL V DVK V I G
Sbjct: 115 IIVVSNPVDIITYLVWRYSG-LPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVK-VYILG 172
Query: 187 NHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALS 246
H SQ PD +
Sbjct: 173 EHGGSQVPDWSTVR---------------------------------------------- 186
Query: 247 AASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWT 298
A+S D IR + EG + +GV ++G +P ++ S P
Sbjct: 187 IATSIADLIRSLL--NDEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVE 236
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263 |
| >gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 3e-42
Identities = 52/147 (35%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
T LD RA ++EK V V NV + G HS +Q+PD +HA V V+E +KD
Sbjct: 1 TTLDTARARTFLAEKFGVDPRSV-NVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKD 59
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
W E I VQ G +I+A+ S+ S A +A + + GT G +S+GVY DG
Sbjct: 60 TDWELEELIERVQNAGYEVIEAKAGSTTYSMAYAAARIAKAILRGT--GGVLSVGVYLDG 117
Query: 277 SYNVPAGLIYSFPVTC-RNGEWTIVQG 302
Y P + +S PV ++G +V+
Sbjct: 118 YYGSPDDIYFSVPVVLGKDGVEKVVEI 144
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173 |
| >gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 7e-37
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
V+V V GA G +G +L +A L + L ++DI + GV M+L + L
Sbjct: 1 VKVAVVGAGGGVGSSLAFALA-LQGLADE----LVLVDINK--DKAEGVAMDLSHGSTFL 53
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
+ D EA ++ V+ G PRK GM R D++++N I+K A+ + AP+
Sbjct: 54 SVPGIVGGDDYEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKS-APDA 112
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITC 155
VLVV+NP + I + + P + I
Sbjct: 113 IVLVVSNPVDILTYIAWKVSGLPPERVIGS 142
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142 |
| >gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 3e-17
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
V T D E G ++ V+ G PRK GM R D++ N I K A ++++ APN V+
Sbjct: 55 VTGTNDY-EDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKY-APNAIVI 112
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
VV NP + + + + NR +G I+E+L V V
Sbjct: 113 VVTNPLDVMTYVAYKA------------SGFPRNRVIGMAGVLDSARFRYFIAEELGVSV 160
Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAII 236
DV+ +++ G H + P ++TV G P+ EL+ + E + + GA I+
Sbjct: 161 KDVQAMVL-GGHGDTMVPLPRYSTVG---G-IPLTELITKEEI--DEIVERTRNGGAEIV 213
Query: 237 KARKLSSALSAASSAC 252
K SA A ++A
Sbjct: 214 NLLKTGSAYYAPAAAI 229
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-15
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 14/213 (6%)
Query: 73 TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132
T+ E ++ V+ G RKE M R+D+++ N I K+ A +++++ PN V+ V N
Sbjct: 65 TNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTN 123
Query: 133 PANTNALILKEFAPSIPAKNITCLT-RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSS 191
P + + +E + IP+ I + LD +R ++EKL V DV V+I G H
Sbjct: 124 PLDCMVKVFQEKS-GIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVI-GGHGDL 181
Query: 192 QYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR---GAAIIKARKLSSALSA- 247
P + TVN P+ + VK A E +++ G I+K K SA A
Sbjct: 182 MVPLPRYCTVNGI----PLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKGSAFFAP 237
Query: 248 ASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNV 280
A++ I ++ E + VY +G YN
Sbjct: 238 AAAIVAMIEAYL--KDEKRVLVCSVYLNGQYNC 268
|
Length = 319 |
| >gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 6e-15
Identities = 64/237 (27%), Positives = 113/237 (47%), Gaps = 22/237 (9%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAF 63
++V + GA+G++G A ++A+ + V+ ++++ P + E L G+++++ DA
Sbjct: 1 MKVSIIGASGRVGSATALLLAK-------EDVVKEINLISRPKSLEKLKGLRLDIYDALA 53
Query: 64 PLLKGVVATTDAVEACT-GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
+ + G +I ++ G PRKEGM R D+ KN I K A + + A
Sbjct: 54 AAGIDAEIKISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEF-A 112
Query: 123 PNCKVLVVANPANT---NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDV 179
P+ K+LVV NP + AL F + + T LD R I++ NV +S+V
Sbjct: 113 PDTKILVVTNPVDVMTYKALKESGFDKN---RVFGLGTHLDSLRFKVAIAKHFNVHISEV 169
Query: 180 KNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAII 236
II G H S P ++ +T+ G P++ + + + + TV+ G II
Sbjct: 170 HTRII-GEHGDSMVPLIS----STSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNII 221
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309 |
| >gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 7e-15
Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 45/253 (17%)
Query: 14 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLK--GVVA 71
AG +G L ++A + + + DI G +++ +AA P+ +
Sbjct: 10 AGNVGATLAHLLAL------KELGDVVLFDI--VEGVPQGKALDIAEAA-PVEGFDTKIT 60
Query: 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131
T+ E G ++ V+ G PRK GM R D++ N I K A ++++ AP+ V+VV
Sbjct: 61 GTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY-APDAIVIVVT 119
Query: 132 NPANT-NALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVSD 178
NP + + LKE + NR +G I+E+LNV V D
Sbjct: 120 NPVDAMTYVALKE-------------SGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKD 166
Query: 179 VKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238
V ++ G H S P V ++TV G P+ +L+ + L+ E + ++ GA I+
Sbjct: 167 VTAFVL-GGHGDSMVPLVRYSTV----GGIPLEDLLSKEK-LD-EIVERTRKGGAEIVGL 219
Query: 239 RKLSSALSAASSA 251
K SA A +++
Sbjct: 220 LKTGSAYYAPAAS 232
|
Length = 307 |
| >gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 8e-14
Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 13/256 (5%)
Query: 41 MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERK 100
++D+ E G ++L A+ L G + +I V+ G PRK G R
Sbjct: 28 LVDVNE--EKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKPGETRL 85
Query: 101 DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
D++++N I ++ + L+++ P+ +LVV+NP + + ++ + + I T LD
Sbjct: 86 DLINRNAPILRSVITNLKKY-GPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLLD 144
Query: 161 HNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL 220
R ++EKL+V V ++ G H SQ + ATV P+ EL
Sbjct: 145 SARFRSLLAEKLDVDPQSVHAYVL-GEHGDSQVVAWSTATVGG----LPLEELAPFTKLD 199
Query: 221 NGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNV 280
V+ G II+ K ++ A++ D ++ +L E + + +G Y +
Sbjct: 200 LEAIEEEVRTSGYEIIR-LKGATNYGIATAIADIVKS-ILLD-ERRVLPVSAVQEGQYGI 256
Query: 281 PAGLIYSFP-VTCRNG 295
+ S P V R G
Sbjct: 257 E-DVALSVPAVVGREG 271
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 6e-12
Identities = 58/191 (30%), Positives = 84/191 (43%), Gaps = 23/191 (12%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMEL--VDAA 62
+V V GAAG IG L ++ QP + L + DI AA GV +L + A
Sbjct: 1 KVAVLGAAGGIGQPLSLLLKL-------QPYVSELSLYDIAGAA----GVAADLSHIPTA 49
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
+KG A G ++ V+ G PRK GM R D+ + N I K +A+ +
Sbjct: 50 -ASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-C 107
Query: 123 PNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSD 178
P +LV+ NP N+ A +LK+ P + +T LD RA ++E
Sbjct: 108 PKAMILVITNPVNSTVPIAAEVLKKKGVYDP-NKLFGVTTLDIVRANTFVAELKGKD-PM 165
Query: 179 VKNVIIWGNHS 189
NV + G HS
Sbjct: 166 EVNVPVIGGHS 176
|
This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312 |
| >gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 25/193 (12%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMEL--VDA 61
V+V V GAAG IG L +L P++ L + DI GV +L ++
Sbjct: 1 VKVAVLGAAGGIGQPLS-------LLLKLNPLVSELALYDI----VNTPGVAADLSHINT 49
Query: 62 AFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121
+ G + + +A G ++ V+ G PRK GM R D+ + N I + A+A+ +
Sbjct: 50 P-AKVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA- 107
Query: 122 APNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVS 177
P +L+++NP N+ A +LK+ P K + +T LD RA ++E L + +
Sbjct: 108 CPKALILIISNPVNSTVPIAAEVLKKAGVYDP-KRLFGVTTLDVVRANTFVAELLGLDPA 166
Query: 178 DVK-NVIIWGNHS 189
V VI G HS
Sbjct: 167 KVNVPVI--GGHS 177
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310 |
| >gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-09
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 18/218 (8%)
Query: 37 VILHMLDIPPAAEALNGVK---MELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPR 93
V+L +++ P +AL+ + + D V T+ +I V+ G PR
Sbjct: 29 VLLDVVEGIPQGKALDMYEASPVGGFDTK-------VTGTNNYADTANSDIVVITAGLPR 81
Query: 94 KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153
K GM R+D++S N I + + +H +PN ++VV+NP + + + + + I
Sbjct: 82 KPGMSREDLLSMNAGIVREVTGRIMEH-SPNPIIVVVSNPLDAMTYVAWQKSGFPKERVI 140
Query: 154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVREL 213
LD R I+ +L V V DV ++ G H + P V ++TV PV +L
Sbjct: 141 GQAGVLDSARFRTFIAMELGVSVQDVTACVL-GGHGDAMVPLVRYSTV----AGIPVADL 195
Query: 214 VKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSA 251
+ + E + ++ G I+ K SA A +++
Sbjct: 196 ISAERI--AEIVERTRKGGGEIVNLLKQGSAYYAPAAS 231
|
This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305 |
| >gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 71/262 (27%), Positives = 106/262 (40%), Gaps = 36/262 (13%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMI-ARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD- 60
K +V V G GQ+G A I A+G+ D+ L ++D+ + +K E +D
Sbjct: 1 KPRNKVTVVGV-GQVGMACAISILAKGL---ADE---LVLVDVVE-----DKLKGEAMDL 48
Query: 61 ---AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASAL 117
+AF + A D + ++ G + EG R D++ +NV I+K L
Sbjct: 49 QHGSAFLKNPKIEADKD-YSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKL 107
Query: 118 EQHAAPNCKVLVVANPANTNALILKEFAPSI----PAKNITCLTRLDHNRALGQISEKLN 173
+++ PN +LVV+NP + I+ A + + I LD R I+E+L
Sbjct: 108 VKYS-PNAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLG 162
Query: 174 VQVSDVKNVIIWGNHSSSQYP---DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQ 230
V S V II G H S P VN A V P KD E V
Sbjct: 163 VAPSSVHGWII-GEHGDSSVPVWSGVNVAGVRLQDL-NPDIGTDKDPEKWK-EVHKQVVD 219
Query: 231 RGAAIIKARKLSS---ALSAAS 249
+IK + +S LS A
Sbjct: 220 SAYEVIKLKGYTSWAIGLSVAD 241
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312 |
| >gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 5e-09
Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 27/205 (13%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL- 65
+V V GAAG IG AL ++ + G++ L + DI P GV ++L +
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPAGSE----LSLYDIAPVTP---GVAVDLSHIPTAVK 54
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA--P 123
+KG + D A G ++ ++ G RK GM+R D+ + N I K + +E+ A P
Sbjct: 55 IKGF-SGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK---NLVEKVAKTCP 110
Query: 124 NCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
+ ++ NP NT I E A + +T LD R+ ++E Q +V+
Sbjct: 111 KACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVE 170
Query: 181 -NVIIWGNHSS-------SQYPDVN 197
VI G HS SQ P V+
Sbjct: 171 VPVI--GGHSGVTILPLLSQVPGVS 193
|
Length = 312 |
| >gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 7e-09
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPN 124
V T+ E G ++ ++ G ++ G R D++ N I A ++++ PN
Sbjct: 63 VIGTNNYEDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PN 121
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITC--LTRLDHNRALGQISEKLNVQVSDVKNV 182
V+V+ NP + +L+E +P KN C LD +R I+EKL V DV
Sbjct: 122 AFVIVITNPLDVMVKLLQE-HSGLP-KNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHAS 179
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK 215
+I G H P + TV P+ E +K
Sbjct: 180 VI-GAHGDKMVPLPRYVTVGGI----PLSEFIK 207
|
Length = 321 |
| >gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL--VDAAFP 64
+V V GAAG IG L ++ ++ LH+ DI GV ++ ++
Sbjct: 20 KVAVLGAAGGIGQPLSLLMKMNPLVSE-----LHLYDIANTP----GVAADVSHINTP-A 69
Query: 65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
++G + +A G ++ ++ G PRK GM R D+ + N I K A+ +H PN
Sbjct: 70 QVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPN 128
Query: 125 CKVLVVANPANTN----ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
V +++NP N+ A +LK+ A K + +T LD RA ++EK + +DV
Sbjct: 129 ALVNIISNPVNSTVPIAAEVLKK-AGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADV- 186
Query: 181 NVIIWGNH 188
+V + G H
Sbjct: 187 DVPVVGGH 194
|
Length = 323 |
| >gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 32/178 (17%)
Query: 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
C ++ V+ G P+K G R D++ KN+ I+K+ + + LV +NP +
Sbjct: 69 SDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPVD- 126
Query: 137 NALIL-----------KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIW 185
IL KE + I T LD R +SEKL+V V II
Sbjct: 127 ---ILTYATWKLSGFPKE-------RVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYII- 175
Query: 186 GNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQ--RGAA--IIKAR 239
G H +++P +HA V P+ E ++++ + E + + + R AA II+ +
Sbjct: 176 GEHGDTEFPVWSHANV----AGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK 229
|
Length = 315 |
| >gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 30/172 (17%)
Query: 56 MELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
M+L AA L + C ++ V+ G P+K G R +++ +NV I K+
Sbjct: 39 MDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVP 98
Query: 116 ALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ-------- 167
+ + + LV NP + IL A L+ NR +G
Sbjct: 99 EV-VKSGFDGIFLVATNPVD----ILTYVAWK--------LSGFPKNRVIGSGTVLDTAR 145
Query: 168 ----ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK 215
++EKL V V II G H S+ P + AT+ G P+ + +K
Sbjct: 146 LRYLLAEKLGVDPQSVHAYII-GEHGDSEVPVWSSATI----GGVPLLDYLK 192
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299 |
| >gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 14/194 (7%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
+ +V V G G +G A+ I L D L ++D+ P + L G ++L AA
Sbjct: 35 RRHTKVSVVGV-GNVGMAIAQTI-----LTQDLADELALVDVNP--DKLRGEMLDLQHAA 86
Query: 63 --FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
P K ++A+TD G ++ ++ G + G R +++ +NV++++ L ++
Sbjct: 87 AFLPRTK-ILASTD-YAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY 144
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
+P+ +L+V+NP + + + + + I T LD +R I++ L+V DV+
Sbjct: 145 -SPDTILLIVSNPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQ 203
Query: 181 NVIIWGNHSSSQYP 194
I+ G H S
Sbjct: 204 AYIV-GEHGDSSVA 216
|
Length = 350 |
| >gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 19/190 (10%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL--VDAAF 63
+V V GAAG IG L ++ + ++ L + DI A GV +L +D
Sbjct: 9 FKVAVLGAAGGIGQPL-SLLLKQNPHVSE----LSLYDIVGAP----GVAADLSHIDTP- 58
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
+ G +A G ++ ++ G PRK GM R D+ + N I + A +AP
Sbjct: 59 AKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVR-DLVAAVASSAP 117
Query: 124 NCKVLVVANPANTNALILKEFAPSI----PAKNITCLTRLDHNRALGQISEKLNVQVSDV 179
V +V+NP N+ I E P K + +T LD RA ++E L + DV
Sbjct: 118 KAIVGIVSNPVNSTVPIAAETLKKAGVYDPRK-LFGVTTLDVVRARKFVAEALGMNPYDV 176
Query: 180 KNVIIWGNHS 189
NV + G HS
Sbjct: 177 -NVPVVGGHS 185
|
Length = 321 |
| >gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 11/150 (7%)
Query: 56 MELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 115
M+L P +K V C G ++ V+ G +K G R D++ +NV+I+K
Sbjct: 43 MDLAHGT-PFVKPVRIYAGDYADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIP 101
Query: 116 ALEQHAAPNCKVLVVANPANTNALILKEFAPSI----PAKNITCLTRLDHNRALGQISEK 171
+ ++ AP+ +LVV NP + +L A + P + I T LD R + E
Sbjct: 102 QILKY-APDAILLVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEH 156
Query: 172 LNVQVSDVKNVIIWGNHSSSQYPDVNHATV 201
L V V II G H S+ + A +
Sbjct: 157 LGVDPRSVHAYII-GEHGDSEVAVWSSANI 185
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308 |
| >gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-04
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 48/162 (29%)
Query: 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK-------VLV 129
C +I V+ G P+K G R D++ KN I K P K LV
Sbjct: 64 SDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMK--------SIVPKIKASGFDGIFLV 115
Query: 130 VANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVS 177
+NP + ++++ L+ L NR +G ++EKLNV
Sbjct: 116 ASNPVDVITYVVQK------------LSGLPKNRVIGTGTSLDTARLRRALAEKLNV--- 160
Query: 178 DVKNVI--IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 217
D ++V + G H SQ+ + TV KP+ +L+K+
Sbjct: 161 DPRSVHAYVLGEHGDSQFVAWSTVTVGG----KPLLDLLKEG 198
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 320 | |||
| PRK05442 | 326 | malate dehydrogenase; Provisional | 100.0 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 100.0 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 100.0 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 100.0 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 100.0 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 100.0 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 100.0 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 100.0 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 100.0 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 100.0 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 100.0 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 100.0 | |
| PLN02602 | 350 | lactate dehydrogenase | 100.0 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| PLN00135 | 309 | malate dehydrogenase | 100.0 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 100.0 | |
| TIGR01756 | 313 | LDH_protist lactate dehydrogenase. This model repr | 100.0 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 100.0 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 100.0 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 100.0 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 100.0 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 100.0 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 100.0 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 100.0 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 100.0 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 100.0 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 100.0 | |
| PLN00106 | 323 | malate dehydrogenase | 100.0 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 100.0 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 100.0 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 100.0 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 100.0 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 100.0 | |
| PF02866 | 174 | Ldh_1_C: lactate/malate dehydrogenase, alpha/beta | 100.0 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 99.97 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 99.93 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 99.93 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 99.91 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 99.9 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.86 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 99.81 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 99.69 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.45 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.29 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.27 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.23 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.2 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.19 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.19 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.16 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.16 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.15 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.14 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.11 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.1 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.08 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.08 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.06 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.06 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.05 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.03 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.03 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.01 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.01 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 98.99 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 98.97 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 98.96 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 98.96 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 98.95 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 98.93 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 98.91 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 98.91 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 98.89 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 98.88 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 98.87 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 98.87 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 98.85 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 98.85 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 98.84 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 98.83 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 98.82 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 98.8 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 98.74 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.71 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 98.68 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.64 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 98.61 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 98.6 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 98.6 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 98.59 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 98.57 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 98.57 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 98.54 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 98.54 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.54 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 98.53 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.53 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 98.5 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.5 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 98.48 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 98.48 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 98.47 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 98.46 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.45 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.44 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 98.43 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 98.43 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.42 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 98.42 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 98.41 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 98.41 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 98.4 | |
| PRK05717 | 255 | oxidoreductase; Validated | 98.4 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 98.4 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 98.39 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 98.39 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 98.37 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 98.37 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 98.37 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.37 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 98.36 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 98.36 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 98.35 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 98.35 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 98.34 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.34 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 98.32 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.32 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 98.32 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 98.31 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 98.31 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.31 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 98.31 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 98.3 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 98.3 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 98.3 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 98.29 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 98.27 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.27 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 98.27 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 98.27 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 98.27 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 98.27 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.27 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.26 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 98.26 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.26 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 98.26 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 98.25 | |
| PRK08643 | 256 | acetoin reductase; Validated | 98.24 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 98.24 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 98.23 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 98.23 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 98.23 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 98.23 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 98.22 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 98.22 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 98.21 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 98.21 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 98.2 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 98.2 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.2 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 98.2 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 98.2 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.2 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 98.19 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 98.19 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.19 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.18 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 98.18 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 98.18 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 98.18 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 98.18 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 98.17 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 98.17 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.17 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 98.17 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 98.16 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 98.16 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 98.16 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 98.16 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 98.15 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 98.15 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.13 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.13 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 98.13 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 98.12 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 98.12 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.12 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 98.12 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 98.12 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 98.12 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 98.12 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 98.12 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 98.12 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.11 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 98.11 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 98.11 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.11 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.11 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 98.11 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 98.11 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 98.11 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 98.11 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 98.1 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 98.1 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.1 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 98.1 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 98.1 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.1 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.09 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.09 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.09 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 98.08 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 98.08 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 98.08 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 98.08 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 98.07 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 98.07 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.07 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 98.07 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.06 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 98.06 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.06 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 98.05 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.05 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 98.05 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 98.05 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 98.03 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 98.03 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 98.03 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 98.03 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 98.02 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.02 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 98.02 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 98.02 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 98.02 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 98.02 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.01 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 98.01 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 98.01 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.0 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 98.0 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 97.99 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 97.98 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 97.98 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.97 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.97 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 97.97 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 97.97 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 97.97 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 97.97 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 97.96 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 97.96 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 97.96 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.96 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 97.95 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 97.95 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.95 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 97.95 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 97.94 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.93 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 97.93 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 97.92 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 97.92 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 97.92 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 97.92 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 97.91 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 97.91 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 97.91 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 97.9 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 97.9 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 97.9 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 97.9 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 97.9 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 97.9 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 97.89 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.88 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.88 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 97.88 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 97.88 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 97.88 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 97.88 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 97.88 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 97.87 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 97.86 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 97.85 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 97.85 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.85 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 97.84 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 97.83 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 97.83 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 97.82 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.82 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 97.82 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 97.82 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 97.82 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.81 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.79 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 97.79 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 97.79 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.79 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.79 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 97.78 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 97.76 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 97.76 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 97.75 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.75 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 97.74 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.74 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 97.74 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 97.74 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 97.7 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.7 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 97.69 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 97.69 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 97.68 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 97.67 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.66 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 97.64 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.64 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 97.63 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 97.62 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.62 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 97.6 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 97.58 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 97.57 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.54 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.52 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 97.52 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 97.52 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 97.52 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 97.51 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.51 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 97.51 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.5 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 97.48 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 97.48 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.47 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 97.46 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.46 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 97.46 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.46 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.44 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 97.43 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 97.42 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.41 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 97.4 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.39 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 97.38 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 97.36 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 97.34 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.32 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 97.32 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 97.32 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.28 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.27 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 97.25 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.25 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 97.24 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.24 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.24 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 97.24 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 97.24 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 97.24 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.23 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 97.23 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 97.22 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.19 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 97.19 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 97.19 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.19 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.19 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 97.18 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 97.17 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 97.16 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 97.14 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 97.13 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.12 | |
| PLN02256 | 304 | arogenate dehydrogenase | 97.11 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 97.1 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.09 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 97.09 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 97.08 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.08 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 97.04 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.03 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 97.01 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 97.01 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.0 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.0 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 96.99 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 96.97 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.97 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 96.96 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 96.95 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.94 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.93 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.92 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.91 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.89 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.87 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.87 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.85 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.79 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 96.78 | |
| PLN00015 | 308 | protochlorophyllide reductase | 96.72 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.69 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.68 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 96.65 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 96.63 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 96.61 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.59 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 96.58 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 96.56 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.52 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.52 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.51 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 96.5 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 96.49 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 96.47 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 96.46 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 96.45 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 96.45 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.44 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.41 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 96.4 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 96.36 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 96.34 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.33 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 96.33 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.31 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.31 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 96.27 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.27 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 96.27 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.24 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.21 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.21 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 96.21 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.17 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 96.17 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 96.15 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 96.13 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.13 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.12 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.12 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 96.11 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 96.07 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.07 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.06 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.05 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 95.99 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 95.99 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 95.98 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 95.98 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 95.96 | |
| KOG4777 | 361 | consensus Aspartate-semialdehyde dehydrogenase [Am | 95.95 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 95.92 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 95.92 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.88 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 95.85 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 95.84 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.83 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 95.82 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 95.82 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 95.8 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 95.8 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.8 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.8 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.77 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.77 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 95.77 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 95.75 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.75 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 95.74 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 95.72 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 95.72 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 95.69 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 95.69 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.65 | |
| PLN02928 | 347 | oxidoreductase family protein | 95.64 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 95.64 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 95.64 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 95.63 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 95.63 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 95.62 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 95.62 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.61 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 95.61 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 95.6 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.6 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 95.59 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.59 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 95.57 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 95.54 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 95.49 |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-72 Score=516.92 Aligned_cols=313 Identities=59% Similarity=0.927 Sum_probs=282.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|+ +|+||+|+||+|+||+++++.|+.+++++.+...+++|+|++++.+++.|+++||+|+..+...++.++.+.+++++
T Consensus 1 ~~-~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~ 79 (326)
T PRK05442 1 MK-APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFK 79 (326)
T ss_pred CC-CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhC
Confidence 55 67899999977999999999999998875344458999999776677999999999998665556677778899999
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhh
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld 160 (320)
|||+||++||.+++++++|.+++..|+++++++++.|+++++|++++|++|||+|++|++++++++++|++|++|.|.||
T Consensus 80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~t~LD 159 (326)
T PRK05442 80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLD 159 (326)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEeeeHHH
Confidence 99999999999999999999999999999999999999987679999999999999999999974499999987779999
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCC
Q 020875 161 HNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240 (320)
Q Consensus 161 ~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg 240 (320)
++||++.+|++|+++|++|++++||||||++|||+||++++ +|+|+.+++.+++|..++|.+++++++++|++.||
T Consensus 160 s~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG 235 (326)
T PRK05442 160 HNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATI----DGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARG 235 (326)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEE----CCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcC
Confidence 99999999999999999999987799999999999999999 99999999877677788999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEeCCeEEEecCCCCChhhhhcccCccc
Q 020875 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 241 ~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
+|+|+++++++++++++++.++++++++|+|++++|+||+|+|+|||+||++|+|+|+++.+++|+++||++|++++.
T Consensus 236 ~t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig~Gv~~iv~~l~L~~~E~~~l~~s~~ 313 (326)
T PRK05442 236 ASSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCENGEYEIVQGLEIDDFSREKIDATLA 313 (326)
T ss_pred CccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCcCCeEEEEEEEEcCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999877555467888877764227899999999999999999999999999999999998679999999999998874
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-72 Score=514.27 Aligned_cols=312 Identities=63% Similarity=0.988 Sum_probs=282.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
++|.||+||||+|+||+++++.|+.+++++.+...|++|+|++++.+++.|+++||+|...+..+++.++.+.+++++||
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 47899999997799999999999999987644555999999976557789999999999866555667777889999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~ 162 (320)
|+||++||.+++++++|.+++..|+++++++++.|+++++|++++|++|||+|++|++++++++++|++|++|+|.||++
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~t~LDs~ 160 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHN 160 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEeeHHHHH
Confidence 99999999999999999999999999999999999999944999999999999999999997339999998777999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCcc
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~ 242 (320)
||++++|++++++|++|+.++||||||++|+|+||++++ +|+|+.+++.++.|++++|.+++++++++|++.||+|
T Consensus 161 R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t 236 (323)
T TIGR01759 161 RAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATV----DGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGAS 236 (323)
T ss_pred HHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEE----CCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCCc
Confidence 999999999999999998776799999999999999999 9999999987766777899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCC-ccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 243 ~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g-~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
+|+++|+++++++.+++.+.+.++++|+|+|++| +||+|+|+|||+||++| +|+|+++++++|+++|+++|+.+|.
T Consensus 237 ~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~ 314 (323)
T TIGR01759 237 SAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATED 314 (323)
T ss_pred chHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHH
Confidence 9877889999888876664223899999999999 99998899999999999 9999999559999999999998874
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=512.77 Aligned_cols=311 Identities=42% Similarity=0.661 Sum_probs=283.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
++|.||+||||+|+||+++++.|+.+++++.+++..++|+|.+.++++++|+++||.|+..++..++.++++.+++++||
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kda 121 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDA 121 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCC
Confidence 35789999997799999999999999998766666788885555568899999999999866655677777889999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc-EEEeehhhH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDH 161 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~-i~~~t~ld~ 161 (320)
|+||++||.|++++++|.|++..|+++++++++.|+++++|++++|++|||+|++|+++++. +++|++| |+++|.||+
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~-sg~~~~rviG~gT~LDs 200 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKN-APNIPRKNFHALTRLDE 200 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHH-cCCCcccEEEecchhHH
Confidence 99999999999999999999999999999999999998768999999999999999999996 6777777 689999999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCc
Q 020875 162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKL 241 (320)
Q Consensus 162 ~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~ 241 (320)
+|+++++|+++++++++|+..+||||||++|||+||+++| +|+|+.+++.++.|.+++|.++++++|++|++.||+
T Consensus 201 aR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V----~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG~ 276 (387)
T TIGR01757 201 NRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI----GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGR 276 (387)
T ss_pred HHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE----CCEEhHHhcccccchHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999996444699999999999999999 999999998776787899999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCc-cCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 242 SSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 242 ~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~-yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
|+|+++|.++++++++|+.+.|+++++|+|++++|+ ||+|+|+|||+||++| +|+|+++.+++|+++||++|+.+|.
T Consensus 277 t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~Sa~ 355 (387)
T TIGR01757 277 SSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKSED 355 (387)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 988788999999999988776889999999999997 9988999999999999 9999997689999999999998874
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-70 Score=491.01 Aligned_cols=294 Identities=32% Similarity=0.420 Sum_probs=269.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC-ChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-DAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~-~~~~al~~aDv 84 (320)
+||+|||| |+||+++++.|+.+++. .|++|+|+++ ++++|.++||.|...+...+..+.. +.+++++|||+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~-----~el~LiDi~~--~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLG-----SELVLIDINE--EKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhccccc-----ceEEEEEccc--ccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence 59999996 99999999999877764 3999999984 7889999999999877665566554 45899999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc-EEEeehhhHHH
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNR 163 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~-i~~~t~ld~~r 163 (320)
|+++||.||+||++|+|++..|+++++++++.+.+++ |+++++++|||+|++||+++++ +++|++| |+++|.||++|
T Consensus 73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~~ty~~~k~-sg~p~~rvig~gt~LDsaR 150 (313)
T COG0039 73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDILTYIAMKF-SGFPKNRVIGSGTVLDSAR 150 (313)
T ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHHHHHHHHHh-cCCCccceecccchHHHHH
Confidence 9999999999999999999999999999999999999 8999999999999999999996 8999999 78899999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcc-cchhhhhHHHHHHhhhhHHHHhcCCcc
Q 020875 164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK-DDAWLNGEFITTVQQRGAAIIKARKLS 242 (320)
Q Consensus 164 ~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~i~~~kg~~ 242 (320)
|++++|+++++++++|++++ +||||++|||+||+++| +|+|+.+++. ++.|..+++.+++|++|++|++.||++
T Consensus 151 ~~~~lae~~~v~~~~V~~~V-iGeHGdt~vp~~S~a~v----~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~~ 225 (313)
T COG0039 151 FRTFLAEKLGVSPKDVHAYV-IGEHGDTMVPLWSQATV----GGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAG 225 (313)
T ss_pred HHHHHHHHhCCChhHceeeE-eccCCCceEEeeeeeeE----CCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCcc
Confidence 99999999999999999986 79999999999999999 9999999998 567888999999999999999999874
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 243 ~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
+++++|.|++++.++++. |+++++|+|+|++|+||+ +|+|||+|+++| +|+++++ ++.|+++||++|+.++.
T Consensus 226 t~~~~A~a~a~~~~ail~--d~~~vl~~s~~l~G~yg~-~dv~~gvP~~lg~~Gv~~ii-e~~l~~~E~~~l~~s~~ 298 (313)
T COG0039 226 TYYGPAAALARMVEAILR--DEKRVLPVSVYLDGEYGV-EDVYFGVPAVLGKNGVEEIL-ELLLSDDEQEKLDKSAE 298 (313)
T ss_pred chhhHHHHHHHHHHHHHc--CCCceEEEEEeecCccCc-CCeEEEeeEEEcCCCcEEEe-cCCCCHHHHHHHHHHHH
Confidence 677889999987776555 578999999999999995 899999999999 9999999 89999999999998764
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-69 Score=512.01 Aligned_cols=307 Identities=40% Similarity=0.619 Sum_probs=280.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCC--eEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQP--VILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~--~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
++.||+||||+|+||+++++.|+.+++++.++. .|++|+|+++ ++++|+++||.|...++..++.++++.+++++|
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~--~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd 176 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSK--QALEGVAMELEDSLYPLLREVSIGIDPYEVFQD 176 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCc--chhHHHHHHHHHhhhhhcCceEEecCCHHHhCc
Confidence 578999999779999999999999966664432 3899999875 789999999999986665677777788999999
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhh-hcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc-EEEeehh
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQ-HAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRL 159 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~-~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~-i~~~t~l 159 (320)
||+||++||.|++++++|.|++..|+++++++++.|.+ ++ |++++|++|||+|++|+++++. ++++++| |+++|.|
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~-p~~ivIVVsNPvDv~t~v~~k~-sg~~~~rViGtgT~L 254 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVAS-RNVKVIVVGNPCNTNALICLKN-APNIPAKNFHALTRL 254 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEcCCcHHHHHHHHHHH-cCCCCcceEEeeccH
Confidence 99999999999999999999999999999999999999 56 8999999999999999999997 6677766 7899999
Q ss_pred hHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcC
Q 020875 160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKAR 239 (320)
Q Consensus 160 d~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~k 239 (320)
|++||++++|+++++++++|+..+||||||++|||+||+++| +|+|+.+++.+++|++++|.++++++|++|++.|
T Consensus 255 DsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V----~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~k 330 (444)
T PLN00112 255 DENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI----NGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKW 330 (444)
T ss_pred HHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEE----CCccHHHhhccccchHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999997755799999999999999999 9999999988777888999999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCC-ccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCcc
Q 020875 240 KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIA 317 (320)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g-~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~ 317 (320)
|+|+|+++|.++++++.+|+.+.|+++++|+|++++| +||+++|+|||+||++| +|+|+++++++|+++|+++|+.+|
T Consensus 331 G~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~Sa 410 (444)
T PLN00112 331 GRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKKSE 410 (444)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHHHH
Confidence 9888878899999999998866689999999999999 59988999999999999 999999967999999999999887
Q ss_pred c
Q 020875 318 F 318 (320)
Q Consensus 318 ~ 318 (320)
.
T Consensus 411 ~ 411 (444)
T PLN00112 411 A 411 (444)
T ss_pred H
Confidence 4
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-69 Score=495.04 Aligned_cols=310 Identities=55% Similarity=0.859 Sum_probs=280.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+|+||+||||+|+||+++++.|+.+++++.++..|++|+|++++.+++.|+++||.|...+...+++++++.+++++|||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 80 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDAD 80 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCC
Confidence 47899999977999999999999999986555569999999876677999999999998666556777778899999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r 163 (320)
+||++||.+++++++|.+++..|+++++++++.++++++|++++|++|||+|++|++++++++++|+++++|.|.||++|
T Consensus 81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~t~LDs~R 160 (322)
T cd01338 81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNR 160 (322)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEehHHHHHH
Confidence 99999999999999999999999999999999999998459999999999999999999973369999988889999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCccc
Q 020875 164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243 (320)
Q Consensus 164 ~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~~ 243 (320)
|++.+|+++|+++.+|++++||||||++++|+||++++ +|+|+.+++.+++|.+++|.+++++++++|++.||+|+
T Consensus 161 l~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~ 236 (322)
T cd01338 161 AKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATI----GGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASS 236 (322)
T ss_pred HHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEE----CCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCcc
Confidence 99999999999999999987899999999999999999 99999988877667788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 244 ~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
|+++++++++++.+++.++++++++|+|++++|+||+|+|+|||+||++| +|+++++ +++|+++|+++|+.+|.
T Consensus 237 ~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~ 311 (322)
T cd01338 237 AASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVE-GLEIDDFAREKIDATLA 311 (322)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEe-CCCCCHHHHHHHHHHHH
Confidence 87655688888887776432369999999999999999999999999999 7777776 89999999999998874
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-68 Score=491.66 Aligned_cols=307 Identities=56% Similarity=0.871 Sum_probs=273.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
.||+||||+|+||+++++.|+.+++++.+...+++|+|++++.++++++++|+.|...+..+.++++.+.+++++|||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 48999998899999999999999987643445799999975446789999999999766655566767889999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC-CCCCcEEEeehhhHHHH
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS-IPAKNITCLTRLDHNRA 164 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~-~~~~~i~~~t~ld~~r~ 164 (320)
||+||.|++++++|.+++..|+++++++++.++++++|++++|++|||+|++|++++++ ++ +|++|++|+|.||++||
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~-sg~~p~~~vig~t~LDs~R~ 159 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKN-APNLPPKNFTALTRLDHNRA 159 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHH-cCCCCHHHEEEeeHHHHHHH
Confidence 99999999999999999999999999999999999548999999999999999999997 67 69999878899999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhc---ccchhhhhHHHHHHhhhhHHHHhcCCc
Q 020875 165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV---KDDAWLNGEFITTVQQRGAAIIKARKL 241 (320)
Q Consensus 165 ~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~i~~~kg~ 241 (320)
|+++|++++++|++|++++||||||++|+|+||+++| +|.|+.++. .+++|.+++|.+++++++++|++.||+
T Consensus 160 r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~ 235 (323)
T cd00704 160 KAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVV----YGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGA 235 (323)
T ss_pred HHHHHHHhCcCHHHceeeeEEecccCceeecccccee----cCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCc
Confidence 9999999999999997766799999999999999999 999998875 344677889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCcc-CCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 242 SSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY-NVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 242 ~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~y-g~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
|+|+++|.++++++.+++.+.+.++++|||++++|+| |+|+|+|||+||+|| +|+++++ +++|+++|+++|++++.
T Consensus 236 t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~-~l~L~~~E~~~l~~s~~ 313 (323)
T cd00704 236 SSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVE-DLKLNDWLREKLKATEE 313 (323)
T ss_pred chhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEec-CCCCCHHHHHHHHHHHH
Confidence 9987778999988888776432239999999999999 998999999999999 7776666 89999999999998874
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-68 Score=490.09 Aligned_cols=310 Identities=67% Similarity=1.033 Sum_probs=276.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+|.||+||||+|+||+++++.|+.+++++.+...+|+|+|++++.+++.++.+|+.|...+...+++...+++++++|||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence 47899999988999999999999988764223348999999765566788899999987666567777778889999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r 163 (320)
+|||+||.+++++++|.+++..|+++++++++.++++++|++++|++|||+|++|++++++.+++|+++|+++|.||+.|
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R 160 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNR 160 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHH
Confidence 99999999999999999999999999999999999997579999999999999999999986788888899999999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCC----CcchhhhcccchhhhhHHHHHHhhhhHHHHhcC
Q 020875 164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG----EKPVRELVKDDAWLNGEFITTVQQRGAAIIKAR 239 (320)
Q Consensus 164 ~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~k 239 (320)
+++++|++|++++++|++++||||||++|||+||++++ + |+|+.+++.++.|.+++|.+++++++++|++.|
T Consensus 161 ~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v----~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~ 236 (325)
T cd01336 161 AKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATV----ELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKAR 236 (325)
T ss_pred HHHHHHHHhCcChhhceEeEEEEcCCCCeeecccccee----ecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHcc
Confidence 99999999999999998887899999999999999999 8 999999987766778999999999999999975
Q ss_pred CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 240 KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
+.++++++|.++++++++++.++++++++|+|++++|+||+|+|+|||+||++| +|+.+++ +++||++||++|+.+|.
T Consensus 237 ~g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~-~~~L~~~E~~~l~~s~~ 315 (325)
T cd01336 237 KLSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQ-GLSIDDFSREKIDATAK 315 (325)
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEec-CCCCCHHHHHHHHHHHH
Confidence 545566778999988887776434689999999999999999999999999999 7777776 89999999999998874
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-67 Score=484.36 Aligned_cols=308 Identities=70% Similarity=1.095 Sum_probs=273.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEEE
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAV 86 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvVi 86 (320)
||+||||+|+||+++++.|+.+++++.+++.+++|+|++++.++++++++|+.|...+....+..+++.+++++|||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999988999999999999988875323347999999776667899999999998655555555557789999999999
Q ss_pred EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHH
Q 020875 87 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166 (320)
Q Consensus 87 ~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~ 166 (320)
++||.|++++++|.+++..|+++++++++.|+++++|++++|++|||+|+||+++++++.++|++.|+++|.||++||++
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~ 160 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA 160 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence 99999999999999999999999999999999995489999999999999999999974455555589999999999999
Q ss_pred HHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCC-C---cchhhhcccchhhhhHHHHHHhhhhHHHHhcCCcc
Q 020875 167 QISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG-E---KPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242 (320)
Q Consensus 167 ~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~-~---~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~ 242 (320)
++|++++++|++|++.+||||||++|||+||+++| + | +|+.+++.++.|+++++.+++++++++|++.||++
T Consensus 161 ~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~~ 236 (324)
T TIGR01758 161 QVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATV----TKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKLS 236 (324)
T ss_pred HHHHHhCCChhhceEeEEEECCCCCccccccccee----cCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccCCC
Confidence 99999999999998756799999999999999999 8 8 99999987765777899999999999999988766
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCc-cCCCCceEEEEEEEEeCCeEEEecCCCCChhhhhcccCccc
Q 020875 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 243 ~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~-yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
+++++|.++++++++++.+.|+++++|+|++++|+ ||+|+|+|||+||++|+|+|+++.+++|+++|+++|+.+|.
T Consensus 237 t~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el~L~~~E~~~l~~s~~ 313 (324)
T TIGR01758 237 SALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAK 313 (324)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 66788899998888777544789999999999999 99988999999999999889988789999999999998874
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-66 Score=491.07 Aligned_cols=307 Identities=34% Similarity=0.612 Sum_probs=278.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+|.||+||||+|.+|++|++.|+.+.++|.++...++|+|++++.++++|+++||.|+++++..++.++++.+++++|||
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~daD 201 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAH 201 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCCC
Confidence 57899999999999999999999999999888889999999656789999999999998777667788888899999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCC-CeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP-NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~-~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~ 162 (320)
+||++||.|++++++|.|++..|+++++++++.|.+++++ +.++|++|||+|++|++++++++++|++||+|.+.+|++
T Consensus 202 vvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gtlds~ 281 (452)
T cd05295 202 VIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQEN 281 (452)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecchHHH
Confidence 9999999999999999999999999999999999999942 567777889999999999998779999998888779999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCC------------cchhhhcccchhhhhHHHHHHhh
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGE------------KPVRELVKDDAWLNGEFITTVQQ 230 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~------------~~~~~~~~~~~~~~~~~~~~v~~ 230 (320)
|+++++|+++|+++++|+.++||||||++|||+||+++| +| +|+.+++.++.|..+++.+.+++
T Consensus 282 R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V----~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~ 357 (452)
T cd05295 282 RAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARV----YRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKS 357 (452)
T ss_pred HHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEE----cccccccccccccCccHHHHhcchhhhHHHHHHHHHH
Confidence 999999999999999998777899999999999999999 55 99999987778888999999999
Q ss_pred hhHHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEeCCeEEEecCCCCChhhh
Q 020875 231 RGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPM 310 (320)
Q Consensus 231 ~~~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~ 310 (320)
++. ++|| ++++++|.|+++++++|+.++++++++|+||+++|+||+|+|+|||+||++++|.|+++.+++|+++||
T Consensus 358 rg~---~rkg-sT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L~L~e~E~ 433 (452)
T cd05295 358 LSS---SLNH-EAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDLELSEILR 433 (452)
T ss_pred HHH---hccC-ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCCCCCHHHH
Confidence 988 5566 456678999999999998865568999999999999999999999999999966677777999999999
Q ss_pred hcccCccc
Q 020875 311 SFLSPIAF 318 (320)
Q Consensus 311 ~~l~~~~~ 318 (320)
++|+.++.
T Consensus 434 ~kL~~S~~ 441 (452)
T cd05295 434 EVLKRITS 441 (452)
T ss_pred HHHHHHHH
Confidence 99998764
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-66 Score=472.23 Aligned_cols=292 Identities=19% Similarity=0.283 Sum_probs=262.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC-cceEEeCChhhhcCCCcEE
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~al~~aDvV 85 (320)
||+|+|| |+||+++++.|+.+++++ |++|+|+++ ++++|+++||.|...... .++.++.+.+++++|||+|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~-----elvL~Di~~--~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDiv 72 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFS-----EIVLIDVNE--GVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADII 72 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCC-----EEEEEeCCc--chhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEE
Confidence 7999995 999999999999999875 999999974 678999999999764432 3556655678999999999
Q ss_pred EEeCCCCCCCCCC--HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc-EEEeehhhHH
Q 020875 86 VMVGGFPRKEGME--RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN 162 (320)
Q Consensus 86 i~~ag~~~~~~~~--r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~-i~~~t~ld~~ 162 (320)
|++||.|++++++ |.|++..|+++++++++.+.+++ |++++|++|||+|+||+++++. +++|++| |+.+|.||++
T Consensus 73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv~t~~~~k~-sg~p~~rviG~gt~LDs~ 150 (307)
T cd05290 73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLDIAVYIAATE-FDYPANKVIGTGTMLDTA 150 (307)
T ss_pred EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHHHHHHHHHHH-hCcChhheecccchHHHH
Confidence 9999999999998 69999999999999999999999 8999999999999999999996 8999999 5677999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcc--c-chhhhhHHHHHHhhhhHHHHhcC
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK--D-DAWLNGEFITTVQQRGAAIIKAR 239 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~--~-~~~~~~~~~~~v~~~~~~i~~~k 239 (320)
||++++|+++|++|++|+++ ||||||++|||+||+++| +|+|+.+++. + +.|.++++.++++++|++|++.|
T Consensus 151 R~~~~la~~l~v~~~~V~~~-ViGeHGds~vp~wS~~~v----~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~K 225 (307)
T cd05290 151 RLRRIVADKYGVDPKNVTGY-VLGEHGSHAFPVWSLVNI----AGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRK 225 (307)
T ss_pred HHHHHHHHHhCCCcccEEEE-EEecCCCceEEeeeeeEE----CCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999998 589999999999999999 9999999874 2 34457899999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 240 KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
|+|+|.+ |.++++++.+++. ++++++|+|++++|+||. +++|+|+||+++ +|+++++ +++||++||++|+++|.
T Consensus 226 G~t~~~i-a~a~~~ii~ail~--d~~~v~~vsv~~~G~yg~-~~v~~svP~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~ 300 (307)
T cd05290 226 GWTNAGI-AKSASRLIKAILL--DERSILPVCTLLSGEYGL-SDVALSLPTVIGAKGIERVL-EIPLDEWELEKLHKSAK 300 (307)
T ss_pred CeehHHH-HHHHHHHHHHHHh--CCCeEEEEEEeeCCccCC-CCEEEEEEEEEeCCCceEec-CCCCCHHHHHHHHHHHH
Confidence 9888754 6888887776554 578999999999999994 899999999999 9999998 79999999999998874
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=463.36 Aligned_cols=289 Identities=21% Similarity=0.277 Sum_probs=262.4
Q ss_pred EEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEEEEeC
Q 020875 10 VTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVG 89 (320)
Q Consensus 10 IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvVi~~a 89 (320)
||| +|+||+++++.|+.+++++ |++|+|+++ ++++|+++||+|...+...++.++.+.+++++|||+||++|
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~-----el~L~Di~~--~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIAD-----EIVLIDINK--DKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCC-----EEEEEeCCC--ChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 689 5999999999999999875 999999974 67899999999998666666666667789999999999999
Q ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE-EEeehhhHHHHHHHH
Q 020875 90 GFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRALGQI 168 (320)
Q Consensus 90 g~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i-~~~t~ld~~r~~~~~ 168 (320)
|.|++++++|.|++..|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|+ +.+|.||+.|+++++
T Consensus 73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~~~-sg~p~~~viG~gt~LDs~R~~~~l 150 (299)
T TIGR01771 73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNPVDILTYVAWKL-SGFPKNRVIGSGTVLDTARLRYLL 150 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHH-hCCCHHHEEeccchHHHHHHHHHH
Confidence 99999999999999999999999999999998 8999999999999999999996 79999995 666999999999999
Q ss_pred HHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhccc----chhhhhHHHHHHhhhhHHHHhcCCccch
Q 020875 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQQRGAAIIKARKLSSA 244 (320)
Q Consensus 169 a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~i~~~kg~~~~ 244 (320)
|+++++++.+|+++ ||||||++|||+||+++| +|+|+.+++.+ .+|.++++.++++++|++|++.||+|+|
T Consensus 151 a~~l~v~~~~V~~~-v~GeHG~s~vp~~S~~~v----~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~ 225 (299)
T TIGR01771 151 AEKLGVDPQSVHAY-IIGEHGDSEVPVWSSATI----GGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYY 225 (299)
T ss_pred HHHhCcCcCeEEEE-EEecCCCceeeceeeeEE----CCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeH
Confidence 99999999999998 599999999999999999 99999998754 2344678999999999999999998876
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 245 LSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 245 ~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
. +|.++++++++++. ++++++|+|++++|+||+ +|+|||+||+|| +|+++++ +++|+++||++|+++|.
T Consensus 226 ~-~a~a~~~~i~ail~--d~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~ 295 (299)
T TIGR01771 226 G-IGMAVARIVEAILH--DENRVLPVSAYLDGEYGI-KDVYIGVPAVLGRNGVEEII-ELPLSDEEKEAFQKSAE 295 (299)
T ss_pred H-HHHHHHHHHHHHHc--CCCcEEEEEEEecccCCC-CCEEEEEEEEEeCCeeEEEc-cCCCCHHHHHHHHHHHH
Confidence 5 46788888776664 578999999999999998 699999999999 9999999 79999999999998874
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=460.00 Aligned_cols=297 Identities=22% Similarity=0.298 Sum_probs=265.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|++.++||+|||| |.||+++++.|+..++.+ |++|+|+++ +++.|+++|+.|+.... .++.++.+.+++++
T Consensus 2 ~~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~-----el~L~D~~~--~~~~g~~~Dl~~~~~~~-~~~~i~~~~~~~~~ 72 (315)
T PRK00066 2 MKKQHNKVVLVGD-GAVGSSYAYALVNQGIAD-----ELVIIDINK--EKAEGDAMDLSHAVPFT-SPTKIYAGDYSDCK 72 (315)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhcCCCC-----EEEEEeCCC--chhHHHHHHHHhhcccc-CCeEEEeCCHHHhC
Confidence 6778899999995 999999999999999864 999999974 67899999999987333 45666667789999
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE-EEeehh
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRL 159 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i-~~~t~l 159 (320)
|||+||++||.|++++++|.+++..|+++++++++.+++++ |++++|++|||+|+++++++++ +++|++|+ +.+|.|
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~d~~~~~~~k~-sg~p~~~viG~gt~L 150 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPVDILTYATWKL-SGFPKERVIGSGTSL 150 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcHHHHHHHHHHH-hCCCHHHEeecCchH
Confidence 99999999999999999999999999999999999999998 8999999999999999999996 78999996 566999
Q ss_pred hHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhh----hhHHHHHHhhhhHHH
Q 020875 160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL----NGEFITTVQQRGAAI 235 (320)
Q Consensus 160 d~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~i 235 (320)
|+.|+++.+|+++|+++++|+++ ||||||++++|+||++++ +|+|+.+++.+..|. ++++.+++++++++|
T Consensus 151 Ds~R~~~~la~~l~v~~~~V~~~-viGeHG~s~v~~~S~~~v----~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~i 225 (315)
T PRK00066 151 DSARFRYMLSEKLDVDPRSVHAY-IIGEHGDTEFPVWSHANV----AGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEI 225 (315)
T ss_pred HHHHHHHHHHHHhCCCcccEEEE-EEecCCCcceecceeceE----CCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 589999999999999999 999999987654332 457999999999999
Q ss_pred HhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 236 IKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 236 ~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
++.||+|+|. +|.++++++.+++. ++++++|+|++++|+||. +++|||+||++| +|+++++ +++||++||++|+
T Consensus 226 i~~kg~t~~~-~a~~~~~i~~ail~--~~~~v~~~sv~~~g~yg~-~~v~~S~Pv~ig~~Gv~~i~-~l~L~~~E~~~L~ 300 (315)
T PRK00066 226 IEKKGATYYG-IAMALARITKAILN--NENAVLPVSAYLEGQYGE-EDVYIGVPAVVNRNGIREIV-ELPLNDDEKQKFA 300 (315)
T ss_pred HhcCCeehHH-HHHHHHHHHHHHHc--CCCeEEEEEEEeccccCC-CCEEEEeEEEEeCCcEEEEc-CCCCCHHHHHHHH
Confidence 9999988865 57888877766554 678999999999999995 899999999999 8888888 7999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
+++.
T Consensus 301 ~s~~ 304 (315)
T PRK00066 301 HSAD 304 (315)
T ss_pred HHHH
Confidence 8764
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=462.71 Aligned_cols=292 Identities=22% Similarity=0.320 Sum_probs=258.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC-ChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-DAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~-~~~~al~~aDv 84 (320)
+||+||| +|.||+++++.|+.+++.+ |++|+|+++ +++.|+++||.|+...... ..+.. ..+++++|||+
T Consensus 38 ~KI~IIG-aG~VG~~~a~~l~~~~l~~-----el~LiDi~~--~~~~g~a~DL~~~~~~~~~-~~i~~~~dy~~~~daDi 108 (350)
T PLN02602 38 TKVSVVG-VGNVGMAIAQTILTQDLAD-----ELALVDVNP--DKLRGEMLDLQHAAAFLPR-TKILASTDYAVTAGSDL 108 (350)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCCC--chhhHHHHHHHhhhhcCCC-CEEEeCCCHHHhCCCCE
Confidence 7999999 5999999999999998875 999999974 6789999999998743322 34432 34788999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE-EEeehhhHHH
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNR 163 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i-~~~t~ld~~r 163 (320)
||++||.+++++++|.|++..|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|+ +.+|.||++|
T Consensus 109 VVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvtNPvdv~t~~~~k~-sg~p~~rviG~gt~LDs~R 186 (350)
T PLN02602 109 CIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVSNPVDVLTYVAWKL-SGFPANRVIGSGTNLDSSR 186 (350)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHH-hCCCHHHEEeecchHHHHH
Confidence 9999999999999999999999999999999999998 8999999999999999999997 68999996 5568999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccc------hhhhhHHHHHHhhhhHHHHh
Q 020875 164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD------AWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 164 ~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~i~~ 237 (320)
+++.+|+++|+++++|+++ ||||||++|||+||++++ +|+|+.+++.+. +| .+++.+++++++++|++
T Consensus 187 ~r~~lA~~l~v~~~~V~~~-ViGeHGds~vp~wS~~~i----~G~pl~~~~~~~~~~~~~~~-~~~i~~~v~~~g~eIi~ 260 (350)
T PLN02602 187 FRFLIADHLDVNAQDVQAY-IVGEHGDSSVALWSSVSV----GGVPVLSFLEKQQIAYEKET-LEEIHRAVVDSAYEVIK 260 (350)
T ss_pred HHHHHHHHhCCCccceeee-EEecCCCceEeeeeeeeE----CCEEHHHHhhccCCccCHHH-HHHHHHHHHHHHHHHHh
Confidence 9999999999999999998 589999999999999999 999999986531 22 47899999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCC-CceEEEEEEEEe-CCeEEEecCCCCChhhhhcccC
Q 020875 238 ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVP-AGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSP 315 (320)
Q Consensus 238 ~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~-~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~ 315 (320)
.||+|+| ++|.++++++.+++. |+++++|+|++++|+||+| +++|||+||++| +|+++++ +++||++||++|+.
T Consensus 261 ~KG~t~~-gia~a~a~ii~ail~--d~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~-~l~L~~~E~~~l~~ 336 (350)
T PLN02602 261 LKGYTSW-AIGYSVASLVRSLLR--DQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVV-NVHLTDEEAERLRK 336 (350)
T ss_pred cCCccHH-HHHHHHHHHHHHHHh--cCCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEe-cCCCCHHHHHHHHH
Confidence 9998775 457888877765544 6799999999999999994 899999999999 9999998 79999999999998
Q ss_pred ccc
Q 020875 316 IAF 318 (320)
Q Consensus 316 ~~~ 318 (320)
+|.
T Consensus 337 sa~ 339 (350)
T PLN02602 337 SAK 339 (350)
T ss_pred HHH
Confidence 864
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-63 Score=454.37 Aligned_cols=295 Identities=23% Similarity=0.279 Sum_probs=261.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC-cceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~al~~a 82 (320)
..+||+|+| +|+||+++++.|+.+++.. |++|+|+++ +++.|+++||+|+..... ..+..+++ +++++||
T Consensus 2 ~~~Ki~IiG-aG~VG~~~a~~l~~~~~~~-----el~LiD~~~--~~~~g~a~Dl~~~~~~~~~~~v~~~~d-y~~~~~a 72 (312)
T cd05293 2 PRNKVTVVG-VGQVGMACAISILAKGLAD-----ELVLVDVVE--DKLKGEAMDLQHGSAFLKNPKIEADKD-YSVTANS 72 (312)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--cHHHHHHHHHHHhhccCCCCEEEECCC-HHHhCCC
Confidence 357999999 5999999999999998864 999999975 678999999999873322 34554444 6789999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE-EEeehhhH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDH 161 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i-~~~t~ld~ 161 (320)
|+||++||.+++++++|.+++..|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|+ +.+|.||+
T Consensus 73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~k~-sg~p~~~viG~gt~Ld~ 150 (312)
T cd05293 73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVSNPVDIMTYVAWKL-SGLPKHRVIGSGCNLDS 150 (312)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEccChHHHHHHHHHHH-hCCCHHHEEecCchHHH
Confidence 999999999999999999999999999999999999998 8999999999999999999996 79999995 55599999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhccc-----chhhhhHHHHHHhhhhHHHH
Q 020875 162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD-----DAWLNGEFITTVQQRGAAII 236 (320)
Q Consensus 162 ~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~i~ 236 (320)
.|+++.+|+++++++.+|++++ |||||++|||+||++++ +|+|+.+++.. +...++++.++++++|++|+
T Consensus 151 ~R~~~~la~~l~v~~~~v~~~v-~GeHG~s~vp~~S~~~i----~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii 225 (312)
T cd05293 151 ARFRYLIAERLGVAPSSVHGWI-IGEHGDSSVPVWSGVNV----AGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVI 225 (312)
T ss_pred HHHHHHHHHHhCCChhhEEEEE-eecCCCCccccceeceE----CCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 89999999999999999 99999998632 11124789999999999999
Q ss_pred hcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccC
Q 020875 237 KARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSP 315 (320)
Q Consensus 237 ~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~ 315 (320)
+.||+|+|. +|.++++++.+++. ++++++|+|++++|+||+|.++|||+||++| +|+++++ +++||++||++|+.
T Consensus 226 ~~kg~t~~~-~a~a~~~ii~ail~--d~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~-~l~L~~~E~~~l~~ 301 (312)
T cd05293 226 KLKGYTSWA-IGLSVADLVDAILR--NTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVI-KQPLTEEEQEKLQK 301 (312)
T ss_pred HhcCCchHH-HHHHHHHHHHHHHc--CCCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEe-cCCCCHHHHHHHHH
Confidence 999988765 57889887776554 5789999999999999999999999999999 9999999 69999999999998
Q ss_pred ccc
Q 020875 316 IAF 318 (320)
Q Consensus 316 ~~~ 318 (320)
++.
T Consensus 302 s~~ 304 (312)
T cd05293 302 SAD 304 (312)
T ss_pred HHH
Confidence 864
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00135 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=453.73 Aligned_cols=291 Identities=86% Similarity=1.281 Sum_probs=255.3
Q ss_pred HhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHh
Q 020875 26 ARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSK 105 (320)
Q Consensus 26 ~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~ 105 (320)
+.+.++|.++...++|+|+++++++++|+++||.|+..+....++.+++.+++++|||+||++||.|++++++|.+++..
T Consensus 3 ~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~ 82 (309)
T PLN00135 3 ARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSK 82 (309)
T ss_pred ccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHH
Confidence 44566776667799999998766889999999999986655566666676899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhh-cCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc-EEEeehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 106 NVSIYKAQASALEQH-AAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 106 n~~~~~~i~~~i~~~-~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~-i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
|+++++++++.|+++ + |++++|++|||+|+||+++++. +++|++| |+++|.||++||++++|+++++++++|+..+
T Consensus 83 N~~I~~~i~~~i~~~~~-p~aivivvsNPvDv~t~~~~~~-sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~ 160 (309)
T PLN00135 83 NVSIYKSQASALEKHAA-PDCKVLVVANPANTNALILKEF-APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVI 160 (309)
T ss_pred HHHHHHHHHHHHHHhcC-CCeEEEEeCCcHHHHHHHHHHH-cCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeE
Confidence 999999999999996 6 8999999999999999999996 7888877 7899999999999999999999999995433
Q ss_pred EEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCccchHHHHHHHHHHHHHHHhCCC
Q 020875 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 263 (320)
Q Consensus 184 v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~ 263 (320)
||||||++|||+||+++|+.+.+|+|+.+++.+++|+++++.+++++++++|+++|+.++++++|.++++++++++.++|
T Consensus 161 VlGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~ 240 (309)
T PLN00135 161 IWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240 (309)
T ss_pred EEEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCc
Confidence 69999999999999999954447999999876666778999999999999999984434456778999998888777546
Q ss_pred CCcEEEEEEecCCccCCCCceEEEEEEEEeCCeEEEecCCCCChhhhhcccCccc
Q 020875 264 EGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 264 ~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
+++++|+|++++|+||+|+|+|||+||++++|+++.+.+++|+++|+++|+.+|.
T Consensus 241 ~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l~L~~~E~~~l~~S~~ 295 (309)
T PLN00135 241 EGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGLSIDEFSRKKMDATAK 295 (309)
T ss_pred CCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCCCCCHHHHHHHHHHHH
Confidence 7999999999999999988999999999996666666689999999999998874
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=429.57 Aligned_cols=292 Identities=24% Similarity=0.338 Sum_probs=265.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-CcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~al~~aD 83 (320)
..||.|+| .|.||.+.+..++.+++.+ |++|+|.++ ++++|+.|||+|...++ .+++....| +.+.++++
T Consensus 20 ~~KItVVG-~G~VGmAca~siL~k~Lad-----el~lvDv~~--dklkGE~MDLqH~s~f~~~~~V~~~~D-y~~sa~S~ 90 (332)
T KOG1495|consen 20 HNKITVVG-VGQVGMACAISILLKGLAD-----ELVLVDVNE--DKLKGEMMDLQHGSAFLSTPNVVASKD-YSVSANSK 90 (332)
T ss_pred CceEEEEc-cchHHHHHHHHHHHhhhhh-----ceEEEecCc--chhhhhhhhhccccccccCCceEecCc-ccccCCCc
Confidence 46999999 6999999999999999875 999999985 78999999999987544 467777665 68899999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc-EEEeehhhHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN 162 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~-i~~~t~ld~~ 162 (320)
+||+|||..++++++|.+++++|+.+++.+++.+.+|. |+++++++|||+|++||+.|+. ++||++| |+.||+||++
T Consensus 91 lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~yS-pd~~llvvSNPVDilTYv~wKL-SgfP~nRViGsGcnLDsa 168 (332)
T KOG1495|consen 91 LVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYS-PDCILLVVSNPVDILTYVTWKL-SGFPKNRVIGSGCNLDSA 168 (332)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCchHHHHHHHHHH-cCCcccceeccCcCccHH
Confidence 99999999888999999999999999999999999997 9999999999999999999996 9999999 6889999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhccc-------chhhhhHHHHHHhhhhHHH
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD-------DAWLNGEFITTVQQRGAAI 235 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~i 235 (320)
|||++++++||++|+++++++ +||||++.+|+||.+.+ +|.++.++..+ +.| +++-+++...+|+|
T Consensus 169 RFryLi~~~Lg~~pss~hgwI-iGEHGdSsV~vWSgvni----AGv~l~~l~~~~~t~~d~e~w--~eihK~v~~sayev 241 (332)
T KOG1495|consen 169 RFRYLIGNRLGVHPSSCHGWI-IGEHGDSSVPVWSGVNI----AGVSLKDLNPDLGTDYDPENW--KEIHKQVVDSAYEV 241 (332)
T ss_pred HHHHHHHHHhCCCcccceEEE-eeccCCccceecccccc----cceEHhHhChhhcCCCCHHHH--HHHHHHHHHHHHHH
Confidence 999999999999999999996 79999999999999999 99999998753 346 58999999999999
Q ss_pred HhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 236 IKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 236 ~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
++.||+|+|.. +.+++++... |++ +.++++|+|+..+|.||+.+++|||+||+++ +|+..++ +..|+++|+++|+
T Consensus 242 iklKGyTswaI-glsva~l~~a-il~-n~~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv-~~~Lt~~E~akL~ 317 (332)
T KOG1495|consen 242 IKLKGYTSWAI-GLSVADLAQA-ILR-NLRRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVV-KQKLTDEEVAKLK 317 (332)
T ss_pred HHhcCchHHHH-HHHHHHHHHH-HHh-CcCceeeeeeccccccCCCCceEEecceeecCCchhhhh-cccCCHHHHHHHH
Confidence 99999999865 6888876654 554 6799999999999999998899999999999 9999998 8999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
.+|.
T Consensus 318 kSa~ 321 (332)
T KOG1495|consen 318 KSAK 321 (332)
T ss_pred HHHH
Confidence 9875
|
|
| >TIGR01756 LDH_protist lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=450.85 Aligned_cols=291 Identities=36% Similarity=0.620 Sum_probs=255.6
Q ss_pred HHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHH
Q 020875 23 PMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDV 102 (320)
Q Consensus 23 ~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~ 102 (320)
++|.++.++| ++...++|+|+++++++++|+++||.|+..+.......+++++++++|||+||++||.|++++++|.++
T Consensus 3 ~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dl 81 (313)
T TIGR01756 3 HWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADL 81 (313)
T ss_pred ceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHH
Confidence 4566777788 777899999998777899999999999983333233445666689999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH-HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 103 MSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK-EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 103 ~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~-~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+..|+++++++++.|++++++++++|++|||+|++|++++ + .+++|++.|+++|.||++||++++|++++++|++|++
T Consensus 82 l~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~-~sg~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~ 160 (313)
T TIGR01756 82 LTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLH-APKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYH 160 (313)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHH-cCCCCHHHEEecccHHHHHHHHHHHHHhCcChhheee
Confidence 9999999999999999999666899999999999999994 6 6999988789999999999999999999999999988
Q ss_pred eEEEcCCCCccccccccccccCCCCCcchhhh--cccchhhhhHHHHHHhhhhHHHHhcCCccchHHHHHHHHHHHHHHH
Q 020875 182 VIIWGNHSSSQYPDVNHATVNTAAGEKPVREL--VKDDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWV 259 (320)
Q Consensus 182 ~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~i~~~kg~~~~~~~a~a~~~~i~~~i 259 (320)
++||||||++|||+||+++|+. +|.|+..+ +. ++|.++++.+++++++++|++.||+|+|+++|.++++++++|+
T Consensus 161 ~~V~GeHG~s~vp~~S~~~V~~--~G~~~~~~~~~~-~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail 237 (313)
T TIGR01756 161 VVVWGNHAESMVADLTHAEFTK--NGKHQKVFDELC-RDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWL 237 (313)
T ss_pred eEEEECCCCceeecccccEEec--CCeehhHhhhcC-cHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHh
Confidence 8679999999999999999832 67776544 42 3466889999999999999999999988877789999999888
Q ss_pred hCCCCCcEEEEEEecC--CccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 260 LGTPEGTWVSMGVYSD--GSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 260 ~~~~~~~i~~~~v~~~--g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
.++++++++|+|++++ |+||+|+|+|||+||++| +|+|+++++++|+++||++|+.+|.
T Consensus 238 ~~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~ 299 (313)
T TIGR01756 238 FGTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEK 299 (313)
T ss_pred cCCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHH
Confidence 8667889999999996 399998899999999999 9999999559999999999998874
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-62 Score=447.85 Aligned_cols=293 Identities=24% Similarity=0.351 Sum_probs=261.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
+||+|+| +|.+|+++++.|+..++.. +|+|+|+++ +++++.++|+.|...+...........++++++||+|
T Consensus 1 ~kI~IIG-aG~vG~~~a~~l~~~g~~~-----ei~l~D~~~--~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIG-AGHVGSSFAYSLVNQGIAD-----ELVLIDINE--EKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV 72 (306)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--chhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence 4899999 5999999999999988753 899999975 6789999999998754444444444567889999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE-EEeehhhHHHH
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRA 164 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i-~~~t~ld~~r~ 164 (320)
|+++|.|++++++|.+++.+|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|+ +.+|.||+.|+
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~d~~~~~~~~~-~g~p~~~v~g~gt~LDs~R~ 150 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPVDVITYVVQKL-SGLPKNRVIGTGTSLDTARL 150 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHH-hCcCHHHEeeccchHHHHHH
Confidence 999999999999999999999999999999999998 8999999999999999999996 89999995 66699999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhh---hhHHHHHHhhhhHHHHhcCCc
Q 020875 165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL---NGEFITTVQQRGAAIIKARKL 241 (320)
Q Consensus 165 ~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~i~~~kg~ 241 (320)
++++|+++++++.+|+++ ||||||++++|+||++++ +|+|+.+++.+..|. ++++.++++++|++|++.||+
T Consensus 151 ~~~la~~l~v~~~~v~~~-V~G~Hg~s~~~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~ 225 (306)
T cd05291 151 RRALAEKLNVDPRSVHAY-VLGEHGDSQFVAWSTVTV----GGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGA 225 (306)
T ss_pred HHHHHHHHCCCcccceEE-EEecCCCceeecceeeEE----cCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCc
Confidence 999999999999999997 699999999999999999 999999988654443 578999999999999999998
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 242 SSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 242 ~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
|+|. +|.++++++.+++. ++++++|+|++++|+||. +|+|||+||++| +|+++++ +++|+++||++|++++.
T Consensus 226 t~~~-~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~l~~~E~~~l~~s~~ 298 (306)
T cd05291 226 TYYG-IATALARIVKAILN--DENAILPVSAYLDGEYGE-KDVYIGVPAIIGRNGVEEVI-ELDLTEEEQEKFEKSAD 298 (306)
T ss_pred cHHH-HHHHHHHHHHHHHc--CCCEEEEEEEEeccccCC-CCEEEEEEEEEeCCCEEEEE-CCCCCHHHHHHHHHHHH
Confidence 8765 46788887776654 678999999999999995 899999999999 9999988 79999999999998864
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=442.63 Aligned_cols=290 Identities=24% Similarity=0.348 Sum_probs=262.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC-cceEEeCChhhhcCCCcEEE
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEACTGVNIAV 86 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~al~~aDvVi 86 (320)
|+|+| +|.||+++++.|+.+++.+ +++|+|+++ +++.++++||.|...+.. ..+...++ +++++|||+||
T Consensus 1 i~iiG-aG~VG~~~a~~l~~~~~~~-----el~l~D~~~--~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVI 71 (300)
T cd00300 1 ITIIG-AGNVGAAVAFALIAKGLAS-----ELVLVDVNE--EKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVV 71 (300)
T ss_pred CEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--cHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEE
Confidence 57999 5999999999999999865 899999974 678999999999876532 23333344 78999999999
Q ss_pred EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhHHHHH
Q 020875 87 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNRAL 165 (320)
Q Consensus 87 ~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~~r~~ 165 (320)
+++|.|++++++|.+++.+|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|++|. |.+|+.|++
T Consensus 72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~~~~~~~~~-sg~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDILTYVAQKL-SGLPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHHHHHHHHHH-hCcCHHHEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999999 9999999999999999999996 78999996555 899999999
Q ss_pred HHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCccchH
Q 020875 166 GQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSAL 245 (320)
Q Consensus 166 ~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~~~~ 245 (320)
+.+|+++++++.+|++++ +||||++++|+||++++ +|+|+.+++.+++|..+++.+++++++++|++.||+|+|
T Consensus 150 ~~la~~l~v~~~~v~~~v-iGeHg~s~v~~~S~~~v----~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~~- 223 (300)
T cd00300 150 SLLAEKLDVDPQSVHAYV-LGEHGDSQVVAWSTATV----GGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNY- 223 (300)
T ss_pred HHHHHHhCCCcccEEEEE-EeccCCceeeeeeeeEE----CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcchH-
Confidence 999999999999999985 79999999999999999 999999998776778899999999999999999998876
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 246 SAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 246 ~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
++|.++++++.+++. ++++++|+|++++|+||. +++|||+||++| +|+++++ +++|+++||++|++++.
T Consensus 224 ~~a~a~~~~~~ai~~--~~~~v~~~s~~~~g~yg~-~~~~~s~Pv~ig~~Gi~~i~-~l~L~~~E~~~l~~s~~ 293 (300)
T cd00300 224 GIATAIADIVKSILL--DERRVLPVSAVQEGQYGI-EDVALSVPAVVGREGVVRIL-EIPLTEDEEAKLQKSAE 293 (300)
T ss_pred HHHHHHHHHHHHHHc--CCCeEEEEEEEecCccCC-CCEEEEEEEEEeCCCeEEEe-cCCCCHHHHHHHHHHHH
Confidence 568999988877665 578999999999999995 899999999999 9999999 79999999999998874
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-61 Score=407.07 Aligned_cols=314 Identities=72% Similarity=1.128 Sum_probs=302.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+|.+|+|+||+|.||+++++.++.+-.+|.++...++|+|+.+..+.++|..|+|.|++.|++..+..+++..++|+|.|
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv~ 82 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDVD 82 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhccCc
Confidence 67899999999999999999999999999998889999999887788999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r 163 (320)
+.|...+.||++|++|.|++..|+++++.-+.++++|++|++++++++||++..+.++.++++.+|.+++-++|.||..|
T Consensus 83 ~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDhNR 162 (332)
T KOG1496|consen 83 VAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDHNR 162 (332)
T ss_pred EEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCccc
Q 020875 164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243 (320)
Q Consensus 164 ~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~~ 243 (320)
...++|.++|++.++|++++|||+|+.+|+|+..+++|+...+.+|+.+.+.|+.|+..+|.+.||+||..+++.++.++
T Consensus 163 A~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark~SS 242 (332)
T KOG1496|consen 163 ALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARKLSS 242 (332)
T ss_pred HHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhhhhhh
Confidence 99999999999999999999999999999999999999776677999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEeCCeEEEecCCCCChhhhhcccCcc
Q 020875 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPMSFLSPIA 317 (320)
Q Consensus 244 ~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~~~l~~~~ 317 (320)
.+|+|.+++++|++|+.+++++++++++|+++|.||+|.|..||+||++.+|.|++++.++++++-++++...+
T Consensus 243 A~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~k~g~wkiVqgl~iddf~r~km~~t~ 316 (332)
T KOG1496|consen 243 AMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTIKNGDWKIVQGLPIDDFSREKMDLTA 316 (332)
T ss_pred hhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEecCCceEEEcCcchhHHHHHhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987654
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-59 Score=430.28 Aligned_cols=293 Identities=24% Similarity=0.361 Sum_probs=256.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCc--ceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLK--GVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~--~v~~~~~~~~al~~ 81 (320)
+.+||+|+|| |++|+++++.++..++ . +++|+|+++ +++.+.++|+.|....... .++.+++ +++++|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~-----~l~L~Di~~--~~~~g~~lDl~~~~~~~~~~~~i~~~~d-~~~l~~ 73 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-G-----DVVLYDVIK--GVPQGKALDLKHFSTLVGSNINILGTNN-YEDIKD 73 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-C-----eEEEEECCC--ccchhHHHHHhhhccccCCCeEEEeCCC-HHHhCC
Confidence 4679999995 9999999999998886 2 899999975 5677889999998643332 3444444 569999
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhh
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLD 160 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld 160 (320)
||+||+++|.+++++++|.|++..|.++++++++.+++++ |++++|++|||+|+++++++++ +++|++|++|. |.||
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di~t~~~~~~-s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDCMVKVFQEK-SGIPSNKICGMAGVLD 151 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHh-hCCCcccEEEecchHH
Confidence 9999999999999999999999999999999999999999 8999999999999999999995 79999996555 5999
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhh---hhHHHHHHhhhhHHHHh
Q 020875 161 HNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL---NGEFITTVQQRGAAIIK 237 (320)
Q Consensus 161 ~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~i~~ 237 (320)
+.|+++.+|++++++|++|++++ +||||++|+|+||++++ +|+|+.+++.++.|. ++++.+++++++++|++
T Consensus 152 s~R~~~~la~~l~v~~~~v~~~v-iGeHg~~~v~~~s~~~v----~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~ 226 (319)
T PTZ00117 152 SSRFRCNLAEKLGVSPGDVSAVV-IGGHGDLMVPLPRYCTV----NGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVK 226 (319)
T ss_pred HHHHHHHHHHHhCCCcccceEEE-eecCCCcEEeceeeceE----CCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999886 79999999999999999 999999987654343 46799999999999999
Q ss_pred c--CCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 238 A--RKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 238 ~--kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
. ||.+ ++++|+++++++.+++. ++++++|+|++++|+||+ +|+|||+||++| +|+++++ +++|+++||++|+
T Consensus 227 ~~~kg~t-~~~~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~-~l~l~~~E~~~l~ 301 (319)
T PTZ00117 227 LLKKGSA-FFAPAAAIVAMIEAYLK--DEKRVLVCSVYLNGQYNC-KNLFVGVPVVIGGKGIEKVI-ELELNAEEKELFD 301 (319)
T ss_pred hcCCCCh-HHHHHHHHHHHHHHHhc--CCCeEEEEEEEeccccCC-CCeEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHH
Confidence 7 5655 45778999988776665 578999999999999999 599999999999 8999998 7999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
++|.
T Consensus 302 ~s~~ 305 (319)
T PTZ00117 302 KSIE 305 (319)
T ss_pred HHHH
Confidence 8874
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-59 Score=429.65 Aligned_cols=292 Identities=21% Similarity=0.297 Sum_probs=258.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.||+++++.|+..|+.. +++|+|+++ +++++.++|+.|..... ......++.++++++||+|
T Consensus 1 mkI~IIG-aG~VG~~~a~~l~~~g~~~-----ev~l~D~~~--~~~~g~a~dl~~~~~~~-~~~~i~~~d~~~l~~aDiV 71 (308)
T cd05292 1 MKVAIVG-AGFVGSTTAYALLLRGLAS-----EIVLVDINK--AKAEGEAMDLAHGTPFV-KPVRIYAGDYADCKGADVV 71 (308)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCCC-----EEEEEECCc--hhhhhHHHHHHcccccc-CCeEEeeCCHHHhCCCCEE
Confidence 6899999 5999999999999988753 899999974 56788999999885322 2234444557899999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE-EEeehhhHHHH
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHNRA 164 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i-~~~t~ld~~r~ 164 (320)
|++++.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|+++++++++ +|+|++|+ +.+|.||+.|+
T Consensus 72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tNP~d~~~~~~~~~-sg~p~~~viG~gt~LDs~R~ 149 (308)
T cd05292 72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTNPVDVLTYVAYKL-SGLPPNRVIGSGTVLDTARF 149 (308)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-HCcCHHHeecccchhhHHHH
Confidence 999999999999999999999999999999999998 8999999999999999999996 79999995 66799999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccc-----hhhhhHHHHHHhhhhHHHHhcC
Q 020875 165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD-----AWLNGEFITTVQQRGAAIIKAR 239 (320)
Q Consensus 165 ~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~i~~~k 239 (320)
++++|+++++++.+|+++ ||||||++|+|+||+++| +|+|+.+++.+. .+.++++.+++++++++|++.|
T Consensus 150 ~~~la~~~~v~~~~v~~~-viGeHg~~~~~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k 224 (308)
T cd05292 150 RYLLGEHLGVDPRSVHAY-IIGEHGDSEVAVWSSANI----GGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK 224 (308)
T ss_pred HHHHHHHhCCCccceece-eeccCCCcEEecceeeeE----CCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998 589999999999999999 999999886541 1336789999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 240 KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
|+|+|. +|.++++++++++. ++++++|+|++++|+||+ +++|||+||+|| +|+++++ +++||++||++|++++.
T Consensus 225 g~t~~~-~a~a~~~i~~ail~--~~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~-~~~L~~~E~~~l~~s~~ 299 (308)
T cd05292 225 GATYYA-IGLALARIVEAILR--DENSVLTVSSLLDGQYGI-KDVALSLPCIVGRSGVERVL-PPPLSEEEEEALRASAE 299 (308)
T ss_pred CccHHH-HHHHHHHHHHHHHc--CCCcEEEEEEEEcccCCC-CCEEEEEEEEEeCCceEEec-CCCCCHHHHHHHHHHHH
Confidence 988754 57888877766554 688999999999999998 799999999999 9999999 79999999999998864
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-59 Score=428.30 Aligned_cols=296 Identities=21% Similarity=0.329 Sum_probs=256.6
Q ss_pred CCC-CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC--cceEEeCChhh
Q 020875 1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVE 77 (320)
Q Consensus 1 m~~-~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~ 77 (320)
|++ +++||+|+| +|.+|+++++.++..++. +++|+|+++ +++.+.++|+.|...... .++..+++ ++
T Consensus 1 ~~~~~~~KI~IIG-aG~vG~~ia~~la~~gl~------~i~LvDi~~--~~~~~~~ld~~~~~~~~~~~~~I~~~~d-~~ 70 (321)
T PTZ00082 1 MTMIKRRKISLIG-SGNIGGVMAYLIVLKNLG------DVVLFDIVK--NIPQGKALDISHSNVIAGSNSKVIGTNN-YE 70 (321)
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCC------eEEEEeCCC--chhhHHHHHHHhhhhccCCCeEEEECCC-HH
Confidence 444 457999999 599999999999988873 799999986 456788999998754332 34554455 58
Q ss_pred hcCCCcEEEEeCCCCCCCCC-----CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc
Q 020875 78 ACTGVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN 152 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~-----~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~ 152 (320)
+++|||+||+++|.++++++ +|.+++..|+++++++++.+++++ |++++|++|||+|++++.++++ +++|++|
T Consensus 71 ~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~di~t~~~~~~-sg~p~~r 148 (321)
T PTZ00082 71 DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLDVMVKLLQEH-SGLPKNK 148 (321)
T ss_pred HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHh-cCCChhh
Confidence 99999999999999999998 999999999999999999999999 8899999999999999999985 8999899
Q ss_pred EEEe-ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh---hhhHHHHHH
Q 020875 153 ITCL-TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW---LNGEFITTV 228 (320)
Q Consensus 153 i~~~-t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~v 228 (320)
++|. |.||+.|+++.+|+++++++++|++++ +||||+++||+||++++ +|.|+.+++.++.+ .++++.+++
T Consensus 149 viGlgt~lds~R~~~~la~~l~v~~~~v~~~v-iGeHg~s~v~~~S~~~i----~g~~~~~~~~~~~~~~~~~~~i~~~~ 223 (321)
T PTZ00082 149 VCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV-IGAHGDKMVPLPRYVTV----GGIPLSEFIKKGLITQEEIDEIVERT 223 (321)
T ss_pred EEEecCcccHHHHHHHHHHHhCCCcccceeeE-EecCCCceEecceeeEE----CCEEHHHhhhcccCCHHHHHHHHHHH
Confidence 6544 599999999999999999999999985 79999999999999999 99999998643211 257899999
Q ss_pred hhhhHHHHhcC--CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCC
Q 020875 229 QQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDA 305 (320)
Q Consensus 229 ~~~~~~i~~~k--g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L 305 (320)
+++|++|++.| |+|. +++|.++++++++++. |+++++|+|++++|+||+ +++|||+|++|| +|+++++ +++|
T Consensus 224 ~~~g~~i~~~~gkg~t~-~~ia~a~~~i~~ail~--d~~~v~~vs~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~l 298 (321)
T PTZ00082 224 RNTGKEIVDLLGTGSAY-FAPAAAAIEMAEAYLK--DKKRVLPCSAYLEGQYGH-KDIYMGTPAVIGANGVEKII-ELDL 298 (321)
T ss_pred HHHHHHHHhhcCCCccH-HHHHHHHHHHHHHHHc--CCCcEEEEEEEecccCCC-CCeEEEEEEEEeCCeEEEEe-CCCC
Confidence 99999999964 5554 5678898877765544 678999999999999999 799999999999 9999999 7999
Q ss_pred ChhhhhcccCccc
Q 020875 306 ILYPMSFLSPIAF 318 (320)
Q Consensus 306 ~~~E~~~l~~~~~ 318 (320)
|++||++|+++|.
T Consensus 299 ~~~E~~~l~~sa~ 311 (321)
T PTZ00082 299 TPEEQKKFDESIK 311 (321)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998874
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-59 Score=426.39 Aligned_cols=290 Identities=24% Similarity=0.353 Sum_probs=253.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--CcceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~al~~a 82 (320)
.|||+|+| +|.+|+.+++.|+.+|+. +|+|+|+++ +...+..+|+.|..... ...++.++++ +++++|
T Consensus 1 ~~KV~VIG-aG~vG~~iA~~la~~g~~------~VvlvDi~~--~l~~g~a~d~~~~~~~~~~~~~i~~t~d~-~~~~~a 70 (305)
T TIGR01763 1 RKKISVIG-AGFVGATTAFRLAEKELA------DLVLLDVVE--GIPQGKALDMYEASPVGGFDTKVTGTNNY-ADTANS 70 (305)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHcCCC------eEEEEeCCC--ChhHHHHHhhhhhhhccCCCcEEEecCCH-HHhCCC
Confidence 36999999 599999999999998863 799999974 45677888888765322 2356655665 569999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE-eehhhH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LTRLDH 161 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~-~t~ld~ 161 (320)
|+||+++|.|++++++|.+++..|.++++++++.+.+++ |++++|++|||+|++|++++++ +|+|++|++| +|.||+
T Consensus 71 DiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~-sg~~~~rviG~g~~lds 148 (305)
T TIGR01763 71 DIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQK-SGFPKERVIGQAGVLDS 148 (305)
T ss_pred CEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-HCcCHHHEEEeccchHH
Confidence 999999999999999999999999999999999999998 8999999999999999999996 7999999655 469999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhc--C
Q 020875 162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA--R 239 (320)
Q Consensus 162 ~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~--k 239 (320)
+|+++.+|++|++++++|+++ ||||||++|+|+||++++ +|+|+.+++.++. ++++.++++++|++|++. |
T Consensus 149 ~R~~~~la~~l~v~~~~v~~~-v~GeHg~s~~~~wS~~~i----~g~~~~~~~~~~~--~~~l~~~v~~~g~~ii~~~~k 221 (305)
T TIGR01763 149 ARFRTFIAMELGVSVQDVTAC-VLGGHGDAMVPLVRYSTV----AGIPVADLISAER--IAEIVERTRKGGGEIVNLLKQ 221 (305)
T ss_pred HHHHHHHHHHhCcCHHHeeee-EEecCCCcEEeeeeeeEE----CCEEHHHhcCHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998 489999999999999999 9999999876543 478999999999999997 5
Q ss_pred CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 240 KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
|+|. +++|.+++++ .++++. |+++++|+|++++|+||+ +++|||+||++| +|+++++ +++|+++||++|+++|.
T Consensus 222 g~t~-~~~a~~~~~i-~~ai~~-~~~~v~~~s~~~~~~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~l~~~E~~~l~~s~~ 296 (305)
T TIGR01763 222 GSAY-YAPAASVVEM-VEAILK-DRKRVLPCAAYLDGQYGI-DGIYVGVPVILGKNGVEHIY-ELKLDQSELALLNKSAK 296 (305)
T ss_pred CChH-HHHHHHHHHH-HHHHhC-CCCeEEEEEEEecccCCC-CceEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHH
Confidence 5565 4567888754 556765 688999999999999999 799999999999 9999999 69999999999998874
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-59 Score=425.93 Aligned_cols=283 Identities=25% Similarity=0.350 Sum_probs=242.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEe---CChhhhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT---TDAVEACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~---~~~~~al~~a 82 (320)
|||+||||+|+||+++++.|+.+++.. |++|+|++ +++|+++||+|...+ ..++.. ++++++++||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~-----elvLiDi~----~a~g~alDL~~~~~~--~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVS-----ELALYDIV----NTPGVAADLSHINTP--AKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCc-----EEEEEecC----ccceeehHhHhCCCc--ceEEEecCCCchHHhcCCC
Confidence 699999977999999999999998864 99999996 578999999998721 245432 3458999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh----HHHHHHHCCCCCCCcEEEeeh
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTR 158 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~----~~~~~~~~~~~~~~~i~~~t~ 158 (320)
|+||++||.|++++++|.|++..|+++++++++.+++++ |++++|++|||+|++ ++++++. +++|++|++|.|.
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvDv~~~i~t~~~~~~-s~~p~~rviG~~~ 147 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPVNSTVPIAAEVLKKA-GVYDPKRLFGVTT 147 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchhhHHHHHHHHHHHh-cCCCHHHEEeeec
Confidence 999999999999999999999999999999999999998 899999999999997 7888884 8999999877788
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCC-CCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNH-SSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h-g~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
||++|+++++|+++|+++++|+++ ||||| |++|||+||++++ . .++ .++ + ++++.++++++|++|++
T Consensus 148 LDs~R~~~~la~~l~v~~~~V~~~-v~GeHsGds~vp~~S~~~~----~----~~~-~~~-~-~~~i~~~v~~~g~~Ii~ 215 (310)
T cd01337 148 LDVVRANTFVAELLGLDPAKVNVP-VIGGHSGVTILPLLSQCQP----P----FTF-DQE-E-IEALTHRIQFGGDEVVK 215 (310)
T ss_pred hHHHHHHHHHHHHhCcCHHHEEEE-EEecCCCCceecccccccc----c----ccC-CHH-H-HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987 58999 8999999999977 2 222 222 2 57899999999999999
Q ss_pred cC---CccchHHHHHHHHHHHHHHHhC-CCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCC-CCChhhhh
Q 020875 238 AR---KLSSALSAASSACDHIRDWVLG-TPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGT-DAILYPMS 311 (320)
Q Consensus 238 ~k---g~~~~~~~a~a~~~~i~~~i~~-~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~-~L~~~E~~ 311 (320)
+| |+| ++++|.++++++++++.+ .+++.+++++ +++|+ |. +|+|||+||++| +|+++++ ++ +|+++|++
T Consensus 216 ~k~gkg~t-~~~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~-~l~~L~~~E~~ 290 (310)
T cd01337 216 AKAGAGSA-TLSMAYAGARFANSLLRGLKGEKGVIECA-YVESD-VT-EAPFFATPVELGKNGVEKNL-GLGKLNDYEKK 290 (310)
T ss_pred CccCCCCc-chhHHHHHHHHHHHHHHhcCCCcceEEEE-EEecc-CC-CceEEEEEEEEeCCeEEEEe-CCCCCCHHHHH
Confidence 85 544 467789999888876643 2355677777 77776 76 799999999999 8988888 79 69999999
Q ss_pred cccCccc
Q 020875 312 FLSPIAF 318 (320)
Q Consensus 312 ~l~~~~~ 318 (320)
+|+.++.
T Consensus 291 ~l~~S~~ 297 (310)
T cd01337 291 LLEAALP 297 (310)
T ss_pred HHHHHHH
Confidence 9998874
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=426.53 Aligned_cols=295 Identities=25% Similarity=0.380 Sum_probs=261.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC--cceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~al~~aD 83 (320)
|||+|+||+|++|++++..|+.+|+.+ +|+++|+++..+++++..+|+.|...... .+++.+++ ++++++||
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~-----~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aD 74 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVK-----EINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSD 74 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCC
Confidence 799999988999999999999999864 89999996544788999999998743332 24555445 67899999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE-EEeehhhHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRLDHN 162 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i-~~~t~ld~~ 162 (320)
+||+++|.|++++++|.+++..|+++++++++.|.+++ |++++|+++||+|++|++++++ +++|++|+ +.+|.||+.
T Consensus 75 iViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t~~~~~~-~g~~~~~viG~gt~LDs~ 152 (309)
T cd05294 75 IVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKE-SGFDKNRVFGLGTHLDSL 152 (309)
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHh-cCCCHHHEeeccchHHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999996 78999996 455899999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCcc
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~ 242 (320)
|+++.+|+++++++++|++++ +||||++|||+||++++ +|+|+.+++..+++.++++.++++++|++|++.||++
T Consensus 153 R~~~~la~~l~v~~~~v~~~v-iGeHg~s~~~~~S~~~i----~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t 227 (309)
T cd05294 153 RFKVAIAKHFNVHISEVHTRI-IGEHGDSMVPLISSTSI----GGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGS 227 (309)
T ss_pred HHHHHHHHHHCcChHHeEEEE-EecCCCceEeeeeecEE----CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999885 79999999999999999 9999999875434567889999999999999999987
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCcc-CCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY-NVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 243 ~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~y-g~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
.| ++|.++++++..+ ++ +++.++|+|++.+|+| |++ |+++|+||+++ +|+++++ +++|+++||++|++++.
T Consensus 228 ~~-~~a~~~~~ii~ai-l~-~~~~v~~vsv~~~g~~~~~~-~~~~svP~~ig~~Gv~~i~-~l~l~~~E~~~l~~s~~ 300 (309)
T cd05294 228 EY-GPASAISNLVRTI-AN-DERRILTVSTYLEGEIDGIR-DVCIGVPVKLGKNGIEEIV-PIEMDDDEREAFRKSAE 300 (309)
T ss_pred hh-hHHHHHHHHHHHH-HC-CCCeEEEEEEEECCccCCCC-CeEEEeEEEEcCCccEEEe-CCCCCHHHHHHHHHHHH
Confidence 65 6678888777664 44 6789999999999998 996 99999999999 9999999 69999999999998874
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-59 Score=425.01 Aligned_cols=283 Identities=25% Similarity=0.329 Sum_probs=242.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEe-C--ChhhhcCCCc
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-T--DAVEACTGVN 83 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~-~--~~~~al~~aD 83 (320)
||+|+||+|+||+++++.|+.+++.. |++|+|+++ +.|+++||.|... ..++... . +++++++|||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~-----elvL~Di~~----a~g~a~DL~~~~~--~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVS-----ELSLYDIAG----AAGVAADLSHIPT--AASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCc-----EEEEecCCC----CcEEEchhhcCCc--CceEEEecCCCchHHHcCCCC
Confidence 79999977999999999999888764 999999974 5789999999762 2345542 1 3489999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh----hHHHHHHHCCCCCCCcEEEeehh
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRL 159 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~----~~~~~~~~~~~~~~~~i~~~t~l 159 (320)
+||++||.+++++++|++++..|+++++++++.+.+++ |++++|++|||+|+ +|+++++. +++|++|++|.+.|
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~-sg~p~~rViG~g~L 147 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKK-GVYDPNKLFGVTTL 147 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHh-cCCChHHEEeeecc
Confidence 99999999999999999999999999999999999998 89999999999998 88888885 89999998777789
Q ss_pred hHHHHHHHHHHHcCCCCCCeeeeEEEcCCCC-ccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhc
Q 020875 160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238 (320)
Q Consensus 160 d~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~-~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~ 238 (320)
|++||++++|++++++|++|++++ |||||+ +|||+||++++ . |+ +.++ .++++.++++++|++|++.
T Consensus 148 DsaR~r~~la~~l~v~~~~v~~~V-iGeHg~~s~vp~~S~~~~----~--~~---~~~~--~~~~i~~~v~~~g~~Ii~~ 215 (312)
T TIGR01772 148 DIVRANTFVAELKGKDPMEVNVPV-IGGHSGETIIPLISQCPG----K--VL---FTED--QLEALIHRIQNAGTEVVKA 215 (312)
T ss_pred hHHHHHHHHHHHhCCCHHHeEEEE-EEecCCCccccccccccc----c--CC---CCHH--HHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999885 899996 99999999986 3 22 2222 2578999999999999997
Q ss_pred C---CccchHHHHHHHHHHHHHHHhC-CCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCC-CCChhhhhc
Q 020875 239 R---KLSSALSAASSACDHIRDWVLG-TPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGT-DAILYPMSF 312 (320)
Q Consensus 239 k---g~~~~~~~a~a~~~~i~~~i~~-~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~-~L~~~E~~~ 312 (320)
| |+| ++++|.++++++..++.. .+++.++|+ ++++|+||. +++|||+||++| +|+++++ ++ +||++||++
T Consensus 216 k~gkg~t-~~~ia~a~~~iv~ail~~~~d~~~v~~~-s~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~~L~~~E~~~ 291 (312)
T TIGR01772 216 KAGAGSA-TLSMAFAGARFVLSLVRGLKGEEGVVEC-AYVESDGVT-EATFFATPLLLGKNGVEKRL-GIGKLSSFEEKM 291 (312)
T ss_pred ccCCCCh-hHHHHHHHHHHHHHHHHhhCCCccEEEE-EEEccCCCc-CceEEEEEEEEcCCeeEEEE-ccCCCCHHHHHH
Confidence 4 444 457788888766654431 256799995 599999997 899999999999 9999998 78 899999999
Q ss_pred ccCccc
Q 020875 313 LSPIAF 318 (320)
Q Consensus 313 l~~~~~ 318 (320)
|+.++.
T Consensus 292 l~~S~~ 297 (312)
T TIGR01772 292 LNGALP 297 (312)
T ss_pred HHHHHH
Confidence 998874
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=412.23 Aligned_cols=285 Identities=24% Similarity=0.323 Sum_probs=244.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC---ChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT---DAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~---~~~~al~ 80 (320)
+|.||+||||+|+||+++++.|+.+++.. +++|+|++ ++.++++||.|.... ..+...+ +++++++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~-----elvL~Di~----~~~g~a~Dl~~~~~~--~~v~~~td~~~~~~~l~ 75 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVS-----ELSLYDIV----GAPGVAADLSHIDTP--AKVTGYADGELWEKALR 75 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCC-----EEEEEecC----CCcccccchhhcCcC--ceEEEecCCCchHHHhC
Confidence 46799999977999999999999877754 99999993 467889999997642 2343332 2389999
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH----HHCCCCCCCcEEEe
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK----EFAPSIPAKNITCL 156 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~----~~~~~~~~~~i~~~ 156 (320)
|+|+||+++|.+++++++|.+++..|+++++++++++++++ |+.+++++|||+|+++++++ + .+++|+++++|.
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~-~~~iviv~SNPvdv~~~~~~~~~~~-~sg~p~~~viG~ 153 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSA-PKAIVGIVSNPVNSTVPIAAETLKK-AGVYDPRKLFGV 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHhhhhh-ccCCChhheeec
Confidence 99999999999999999999999999999999999999998 88999999999999999985 5 589999998777
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCC-ccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHH
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI 235 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~-~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (320)
+.||++||++.+|++++++|++|++++ |||||+ +|||+||++. .|+. ++ .++++.++++++|++|
T Consensus 154 g~LDs~R~r~~la~~l~v~~~~V~~~V-lGeHGd~s~v~~~S~~g-------~~l~----~~--~~~~i~~~v~~~g~~I 219 (321)
T PTZ00325 154 TTLDVVRARKFVAEALGMNPYDVNVPV-VGGHSGVTIVPLLSQTG-------LSLP----EE--QVEQITHRVQVGGDEV 219 (321)
T ss_pred hhHHHHHHHHHHHHHhCcChhheEEEE-EeecCCcccccchhccC-------CCCC----HH--HHHHHHHHHHHHHHHH
Confidence 789999999999999999999999885 899999 8999999973 3553 22 2578999999999999
Q ss_pred HhcCC--ccchHHHHHHHHHHHHHHHhC-CCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecC-CCCChhhh
Q 020875 236 IKARK--LSSALSAASSACDHIRDWVLG-TPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQG-TDAILYPM 310 (320)
Q Consensus 236 ~~~kg--~~~~~~~a~a~~~~i~~~i~~-~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~-~~L~~~E~ 310 (320)
++.|| .++++++|.++++++.+++.+ .++++++|++ +++|+||+ +++|||+||++| +|+++++ + ++|+++|+
T Consensus 220 i~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~~L~~~E~ 296 (321)
T PTZ00325 220 VKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECA-FVESDMRP-ECPFFSSPVELGKEGVERVL-PIGPLNAYEE 296 (321)
T ss_pred HhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEE-EEecCCCC-CCeEEEEEEEEcCCeeEEEc-CCCCCCHHHH
Confidence 99872 244566789999887776643 2477899985 99999997 899999999999 9999999 6 99999999
Q ss_pred hcccCccc
Q 020875 311 SFLSPIAF 318 (320)
Q Consensus 311 ~~l~~~~~ 318 (320)
++|+.++.
T Consensus 297 ~~l~~S~~ 304 (321)
T PTZ00325 297 ELLEAAVP 304 (321)
T ss_pred HHHHHHHH
Confidence 99998864
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-56 Score=409.58 Aligned_cols=288 Identities=26% Similarity=0.357 Sum_probs=244.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC-cceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~al~~a 82 (320)
.+.||+||||+|+||+++++.|+.+++.+ |++|+|+++ ++++++||.|...+.. ..+...++++++++||
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~Di~~----~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVS-----ELHLYDIAN----TPGVAADVSHINTPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCC-----EEEEEecCC----CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCC
Confidence 35799999988999999999999988875 999999974 6788999999875421 2223345678999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch----hhHHHHHHHCCCCCCCcEEEeeh
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN----TNALILKEFAPSIPAKNITCLTR 158 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~----~~~~~~~~~~~~~~~~~i~~~t~ 158 (320)
|+||++||.+++++++|++++..|+++++++++.+++++ |+++++++|||+| ++++.+++. +++|++|++|.+.
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~-s~~p~~~viG~~~ 165 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKA-GVYDPKKLFGVTT 165 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHc-CCCCcceEEEEec
Confidence 999999999999999999999999999999999999999 8999999999999 899988884 8999999988889
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC-CccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHS-SSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg-~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
||++||++++|+++|+++.+|++++ +|||| ++|||+||++++ . .+ +.++ .++++.++++++|++|++
T Consensus 166 LDs~Rl~~~lA~~lgv~~~~V~~~V-iGeHg~~s~vp~~S~~~~----~----~~-~~~~--~~~~i~~~v~~~g~~Ii~ 233 (323)
T PLN00106 166 LDVVRANTFVAEKKGLDPADVDVPV-VGGHAGITILPLLSQATP----K----VS-FTDE--EIEALTKRIQNGGTEVVE 233 (323)
T ss_pred chHHHHHHHHHHHhCCChhheEEEE-EEeCCCccEeeehhccee----c----cc-CCHH--HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999985 79996 599999999976 3 12 2222 257899999999999999
Q ss_pred cC--CccchHHHHHHHHHHHHHHHhCC-CCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCC-CCChhhhhc
Q 020875 238 AR--KLSSALSAASSACDHIRDWVLGT-PEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGT-DAILYPMSF 312 (320)
Q Consensus 238 ~k--g~~~~~~~a~a~~~~i~~~i~~~-~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~-~L~~~E~~~ 312 (320)
.| ..++++++|.+++++++.++.++ +++.++|+| +++|+| +.++|||+||+|| +|+++++ ++ +|+++||++
T Consensus 234 ~k~~kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~~~--~~~v~~s~P~~ig~~Gv~~i~-~~~~L~~~E~~~ 309 (323)
T PLN00106 234 AKAGAGSATLSMAYAAARFADACLRGLNGEADVVECS-YVQSEV--TELPFFASKVRLGRNGVEEVL-GLGPLSEYEQKG 309 (323)
T ss_pred CccCCCCchHHHHHHHHHHHHHHHhccCCCceEEEEE-EECccc--CCceEEEEEEEEcCCeeEEEc-CCCCCCHHHHHH
Confidence 74 23445677899998887766531 366899999 667775 2349999999999 9999999 67 999999999
Q ss_pred ccCccc
Q 020875 313 LSPIAF 318 (320)
Q Consensus 313 l~~~~~ 318 (320)
|+.++.
T Consensus 310 l~~S~~ 315 (323)
T PLN00106 310 LEALKP 315 (323)
T ss_pred HHHHHH
Confidence 998864
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=404.48 Aligned_cols=290 Identities=25% Similarity=0.376 Sum_probs=253.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC--cceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~al~~a 82 (320)
|+||+|+|| |.+|+++++.++..++. +|+|+|+++ +++++..+|+.|...+.. ..++.+++ ++++++|
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~------ev~L~D~~~--~~~~~~~~dl~~~~~~~~~~~~i~~~~d-~~~~~~a 71 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG------DVVLFDIVE--GVPQGKALDIAEAAPVEGFDTKITGTND-YEDIAGS 71 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe------EEEEEECCC--chhHHHHHHHHhhhhhcCCCcEEEeCCC-HHHHCCC
Confidence 479999995 99999999999988762 899999975 567888899988754332 34444445 4789999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDH 161 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~ 161 (320)
|+||+++|.|++++++|.+++.+|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|++|. |.+|+
T Consensus 72 DiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~~~~~~~-s~~~~~~viG~gt~lds 149 (307)
T PRK06223 72 DVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMTYVALKE-SGFPKNRVIGMAGVLDS 149 (307)
T ss_pred CEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCcccEEEeCCCcHH
Confidence 999999999999999999999999999999999999998 8899999999999999999996 79999996544 79999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhc--C
Q 020875 162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA--R 239 (320)
Q Consensus 162 ~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~--k 239 (320)
.|+++.+|+++++++++|++++ +||||++++|+||++++ +|.|+.+++.+ +| .+++.+.+++++++|++. |
T Consensus 150 ~r~~~~la~~l~v~~~~v~~~v-iGehg~s~~p~~S~~~v----~g~~~~~~~~~-~~-~~~l~~~v~~~~~~ii~~~~k 222 (307)
T PRK06223 150 ARFRTFIAEELNVSVKDVTAFV-LGGHGDSMVPLVRYSTV----GGIPLEDLLSK-EK-LDEIVERTRKGGAEIVGLLKT 222 (307)
T ss_pred HHHHHHHHHHhCcChhhCcccE-EcCCCCcceEchhhCEE----CCEEHHHhCCh-HH-HHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999985 79999999999999999 99999998643 44 578999999999999997 6
Q ss_pred CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 240 KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
+++. +++|.++++++.+ ++. ++++++|+|++++|+||+ +|++||+||+++ +|+++++ +++||++||++|+++|.
T Consensus 223 g~t~-~~~A~~~~~ii~a-il~-~~~~~~~~~v~~~g~yg~-~~~~~s~P~~i~~~Gv~~i~-~~~l~~~e~~~l~~s~~ 297 (307)
T PRK06223 223 GSAY-YAPAASIAEMVEA-ILK-DKKRVLPCSAYLEGEYGV-KDVYVGVPVKLGKNGVEKII-ELELDDEEKAAFDKSVE 297 (307)
T ss_pred CChh-HHHHHHHHHHHHH-HHc-CCCcEEEEEEEecCcCCC-CCeEEEeEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHH
Confidence 6554 5567777776665 444 678999999999999999 899999999999 8888887 79999999999998874
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-55 Score=403.12 Aligned_cols=287 Identities=26% Similarity=0.386 Sum_probs=250.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC--cceEEeCChhhhcCCCcEE
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~al~~aDvV 85 (320)
|+|+|| |.+|+.+++.|+..++. +|+|+|+++ +++++..+|+.+...... .+++.+++ +++++|||+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~------eV~L~Di~e--~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG------DVVLLDIVE--GLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc------EEEEEeCCC--cHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEE
Confidence 689995 99999999999988762 899999985 567888888888653332 34555555 6789999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhHHHH
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNRA 164 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~~r~ 164 (320)
|+++|.|++++++|.+++..|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|++|. |.+|+.|+
T Consensus 71 Iit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di~t~~~~~~-s~~~~~rviGlgt~lds~r~ 148 (300)
T cd01339 71 VITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDVMTYVAYKA-SGFPRNRVIGMAGVLDSARF 148 (300)
T ss_pred EEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCHHHEEEecchHHHHHH
Confidence 999999999999999999999999999999999999 8899999999999999999996 79999996544 59999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcC--Ccc
Q 020875 165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKAR--KLS 242 (320)
Q Consensus 165 ~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~k--g~~ 242 (320)
++.+|++|++++++|++++ +|+||++++|+||++++ +|.|+.+++.++. ++++.+++++++++|++.| |+|
T Consensus 149 ~~~la~~l~v~~~~v~~~v-~G~hg~~~~~~~s~~~v----~g~~~~~~~~~~~--~~~~~~~v~~~~~~ii~~k~~g~t 221 (300)
T cd01339 149 RYFIAEELGVSVKDVQAMV-LGGHGDTMVPLPRYSTV----GGIPLTELITKEE--IDEIVERTRNGGAEIVNLLKTGSA 221 (300)
T ss_pred HHHHHHHhCCCccceEEEE-EeCCCCcceecceecEE----CCEEHHHhcChHH--HHHHHHHHHHHHHHHHhhcCCCch
Confidence 9999999999999999986 79999999999999999 9999999876653 5889999999999999977 666
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 243 ~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
.| ++|.++++++. +++. ++++++|+|++++|+||++ ++|||+||+++ +|+++++ ++.||++||++|+.+|.
T Consensus 222 ~~-~~a~~~~~i~~-ail~-~~~~i~~~s~~~~g~yg~~-~~~~s~P~~ig~~G~~~~~-~l~l~~~E~~~l~~s~~ 293 (300)
T cd01339 222 YY-APAAAIAEMVE-AILK-DKKRVLPCSAYLEGEYGIK-DIFVGVPVVLGKNGVEKII-ELDLTDEEKEAFDKSVE 293 (300)
T ss_pred hH-HHHHHHHHHHH-HHHc-CCCcEEEEEEEeccccCCC-CeEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHH
Confidence 54 55788876555 4554 6789999999999999995 99999999999 8888887 79999999999998874
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-55 Score=400.55 Aligned_cols=283 Identities=23% Similarity=0.300 Sum_probs=240.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEE--eCChhhhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA--TTDAVEACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~--~~~~~~al~~a 82 (320)
|||+|+||+|.||+++++.|.. .+.. .+++|+|+++ ...++++|+.|.. ....+.. ..+++++++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~-----~el~L~d~~~---~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAG-----SELSLYDIAP---VTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCc-----cEEEEEecCC---CCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence 7999999889999999998865 3443 3899999874 2467788998752 1122332 34668999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH----HHCCCCCCCcEEEeeh
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK----EFAPSIPAKNITCLTR 158 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~----~~~~~~~~~~i~~~t~ 158 (320)
|+||+++|.+++++++|.+++..|+++++++++.|++++ |+++++++|||+|+||++++ ++ +++|++|++|.|.
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP~D~~t~~~~~~~~~~-sg~p~~rvig~~~ 148 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPVNTTVAIAAEVLKKA-GVYDKNKLFGVTT 148 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchHHHHHHHHHHHHHh-cCCCHHHEEeeec
Confidence 999999999999999999999999999999999999998 89999999999999999987 74 7999999888888
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCC-ccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~-~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
||+.|+++.+|++++++|++|+++ ||||||+ +|||+||++ +|.|+.+ ++ ++++.+++++++++|++
T Consensus 149 Lds~R~~~~ia~~l~~~~~~v~~~-v~GeHg~~s~~p~~S~~------~g~~l~~----~~--~~~i~~~v~~~g~~ii~ 215 (312)
T PRK05086 149 LDVIRSETFVAELKGKQPGEVEVP-VIGGHSGVTILPLLSQV------PGVSFTE----QE--VADLTKRIQNAGTEVVE 215 (312)
T ss_pred HHHHHHHHHHHHHhCCChhheEEE-EEEecCCCceecccccc------CCccCCH----HH--HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987 5899976 999999998 3677732 22 57899999999999999
Q ss_pred cC---CccchHHHHHHHHHHHHHHHhC-CCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCC-CCChhhhh
Q 020875 238 AR---KLSSALSAASSACDHIRDWVLG-TPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGT-DAILYPMS 311 (320)
Q Consensus 238 ~k---g~~~~~~~a~a~~~~i~~~i~~-~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~-~L~~~E~~ 311 (320)
+| |+| ++++|.++++++.+++.+ .++++++|++ +++|+ |. .++|||+||++| +|+++++ ++ +|+++||+
T Consensus 216 ~k~~~g~t-~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~-~~~~L~~~E~~ 290 (312)
T PRK05086 216 AKAGGGSA-TLSMGQAAARFGLSLVRALQGEQGVVECA-YVEGD-GK-YARFFAQPVLLGKNGVEERL-PIGTLSAFEQN 290 (312)
T ss_pred cccCCCCc-hhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EEecc-CC-cceEEEEEEEEcCCeeEEEc-CCCCCCHHHHH
Confidence 87 544 567789999888877654 3577899976 88887 76 799999999999 9999999 67 99999999
Q ss_pred cccCccc
Q 020875 312 FLSPIAF 318 (320)
Q Consensus 312 ~l~~~~~ 318 (320)
+|+.++.
T Consensus 291 ~l~~s~~ 297 (312)
T PRK05086 291 ALEGMLD 297 (312)
T ss_pred HHHHHHH
Confidence 9998874
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-50 Score=361.28 Aligned_cols=252 Identities=32% Similarity=0.466 Sum_probs=225.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcC--cCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-CcceEEeCChhhhcCCCcE
Q 020875 8 VLVTGAAGQIGYALVPMIARGV--MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~--~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~al~~aDv 84 (320)
|+|+||+|.+|+++++.|+..+ .. .+|+|+|+++ +++++..+|++|...+. ..+++.+++.+++++|||+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~-----~el~L~D~~~--~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDi 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLA-----IELVLYDIDE--EKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcc-----eEEEEEeCCc--ccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCE
Confidence 6899977999999999999888 43 3999999975 67899999999987655 4567777777999999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHH
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRA 164 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~ 164 (320)
||+++|.+++++++|.+++.+|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|++|.|.+|+.|+
T Consensus 74 Vv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~-sg~~~~kviG~~~ld~~r~ 151 (263)
T cd00650 74 VIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRY-SGLPKEKVIGLGTLDPIRF 151 (263)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCchhEEEeecchHHHH
Confidence 9999999999999999999999999999999999999 9999999999999999999997 7999999766655999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCccch
Q 020875 165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSA 244 (320)
Q Consensus 165 ~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~~~ 244 (320)
++.+|+++++++++|+.+ |||+||++++|+||+++
T Consensus 152 ~~~la~~l~v~~~~v~~~-v~G~hg~~~~~~~s~~~-------------------------------------------- 186 (263)
T cd00650 152 RRILAEKLGVDPDDVKVY-ILGEHGGSQVPDWSTVR-------------------------------------------- 186 (263)
T ss_pred HHHHHHHhCCCccceEEE-EEEcCCCceEeccccch--------------------------------------------
Confidence 999999999999999976 59999999999998743
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 245 LSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 245 ~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
+|.++++++.+++. +++.++|++++++|+||+|+|++||+||+++ +|+++++ +++|+++||++|+.++.
T Consensus 187 --~a~~~~~ii~ai~~--~~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~-~~~l~~~e~~~l~~s~~ 256 (263)
T cd00650 187 --IATSIADLIRSLLN--DEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPI-EVGLTDFELEKLQKSAD 256 (263)
T ss_pred --HHHHHHHHHHHHHc--CCCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEe-cCCCCHHHHHHHHHHHH
Confidence 46777777776554 5789999999999999988999999999999 8999999 59999999999998763
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=312.97 Aligned_cols=285 Identities=27% Similarity=0.339 Sum_probs=235.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-CcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~al~~a 82 (320)
+..||+|.||+|-||+.|..+|..+...+ ++.|||+.. ..|.+.||+|.+... ...+....+++++++++
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs-----~LaLYDi~~----~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~a 97 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVS-----ELALYDIAN----TPGVAADLSHINTNSSVVGFTGADGLENALKGA 97 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhcCcccc-----eeeeeeccc----CCcccccccccCCCCceeccCChhHHHHHhcCC
Confidence 45799999999999999999998887754 999999963 578899999998643 34455556899999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH---CCCCCCCcEEEeehh
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRL 159 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~---~~~~~~~~i~~~t~l 159 (320)
|+||+-||+||+||++|+|++..|+.++++++.++.++| |++.+.++|||++...+++.+. ...|+++|++|.|.|
T Consensus 98 dvVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~c-P~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtL 176 (345)
T KOG1494|consen 98 DVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCC-PNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL 176 (345)
T ss_pred CEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhC-ccceeEeecCcccccchHHHHHHHHcCCCCccceeceehh
Confidence 999999999999999999999999999999999999999 8999999999999876665543 456899999999999
Q ss_pred hHHHHHHHHHHHcCCCC-CCeeeeEEEcCCC-CccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh
Q 020875 160 DHNRALGQISEKLNVQV-SDVKNVIIWGNHS-SSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 160 d~~r~~~~~a~~l~v~~-~~v~~~~v~G~hg-~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
|..|.+.++++.++++| ++++.+ |+|+|. .+.+|++|+.+.. ..+- ++ .++.|..++|.+|.|+.+
T Consensus 177 DvVRA~tFv~~~~~~~p~~~v~VP-VIGGHaG~TIlPLlSQ~~p~--------~~~~-~~--~~~~Lt~RiQ~gGtEVV~ 244 (345)
T KOG1494|consen 177 DVVRANTFVAEVLNLDPAEDVDVP-VIGGHAGITIIPLLSQCKPP--------FRFT-DD--EIEALTHRIQNGGTEVVK 244 (345)
T ss_pred hhhhHHHHHHHHhCCCchhcCCcc-eecCcCCceEeeecccCCCc--------ccCC-HH--HHHHHHHHHHhCCceEEE
Confidence 99999999999999999 557755 689998 7999999998871 1111 11 257899999999999999
Q ss_pred cCC--ccchHHHHHHHHHHHHHHH---hCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhh
Q 020875 238 ARK--LSSALSAASSACDHIRDWV---LGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMS 311 (320)
Q Consensus 238 ~kg--~~~~~~~a~a~~~~i~~~i---~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~ 311 (320)
.|. .+.++|+|+|.++.....+ .+ +++.+.+..|+++. +++ .||+.|+++| +|++++..-.+||++|++
T Consensus 245 AKaGaGSATLSMAyAga~fa~s~lrgl~G-~~~v~ecafV~s~~-~~~---~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~ 319 (345)
T KOG1494|consen 245 AKAGAGSATLSMAYAGAKFADSLLRGLNG-DEDVVECAFVASPV-TEL---PFFATPVTLGKKGVEEVLGLGKLSDYEEK 319 (345)
T ss_pred eccCCCchhhhHHHHHHHHHHHHHHHhCC-CCCeEEEeEEeccc-cCc---cceeceEEecCCceeeecCCCccCHHHHH
Confidence 996 3667899998776654443 44 35556655577664 355 4999999999 999999976779999998
Q ss_pred cccC
Q 020875 312 FLSP 315 (320)
Q Consensus 312 ~l~~ 315 (320)
.|+.
T Consensus 320 ~l~~ 323 (345)
T KOG1494|consen 320 ALEA 323 (345)
T ss_pred HHHH
Confidence 7764
|
|
| >PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=255.12 Aligned_cols=155 Identities=32% Similarity=0.379 Sum_probs=138.6
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhccc----chhhhhHHHHHHhhhh
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQQRG 232 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~ 232 (320)
|.||++|+++++|+++|++|.+++++ ||||||+++||+||++++ +|.|+.++... .+|..+++.+++++++
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~-ViGeHg~s~~~~~S~~~v----~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g 75 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAY-VIGEHGDSQVPDWSHAKV----GGVPLLSYAKPSGKLSEEELEELTERVRKAG 75 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEE-EEBSSSTTEEEEGGGEEE----TTEEHHHHHHTTTSSSHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEE-EEecCCcceeeeeecccc----cccccccccccccchhHHhhhccccccEecc
Confidence 68999999999999999999999987 589999999999999999 99999776543 3567789999999999
Q ss_pred HHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCc-eEEEEEEEEe-CCeEEEecCCCCChhhh
Q 020875 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAG-LIYSFPVTCR-NGEWTIVQGTDAILYPM 310 (320)
Q Consensus 233 ~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~-v~~s~P~~i~-~G~~~~~~~~~L~~~E~ 310 (320)
++|++.|++++++++|.|+++++.+++. ++++++|+|++++|+||++.+ +|||+||++| +|++++++.++||++|+
T Consensus 76 ~~ii~~k~g~t~~s~A~a~~~~v~ail~--~~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~ 153 (174)
T PF02866_consen 76 YEIIKAKGGSTSYSIAAAAARIVEAILK--DERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQ 153 (174)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHHT--THTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHH
T ss_pred ceeeeeccccCcCCHHHHHHHHHHHHhh--cccccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHH
Confidence 9999999556667889999988887666 468999999999999999654 9999999999 99999995599999999
Q ss_pred hcccCccc
Q 020875 311 SFLSPIAF 318 (320)
Q Consensus 311 ~~l~~~~~ 318 (320)
++|+++|.
T Consensus 154 ~~l~~sa~ 161 (174)
T PF02866_consen 154 EKLKESAK 161 (174)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T .... |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=218.24 Aligned_cols=141 Identities=29% Similarity=0.510 Sum_probs=129.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+||+|.||+++++.|+.+++.+ |++|+|+++ ++++|+++|++|...+...+.....+.+++++|||+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~-----ei~L~D~~~--~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLAD-----EIVLIDINE--DKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSS-----EEEEEESSH--HHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-----ceEEeccCc--ccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence 799999988999999999999998864 999999974 6899999999999877766677777889999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~ 155 (320)
|+++|.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|++|++++++ +++|++|++|
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~~t~~~~~~-s~~~~~kviG 141 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDVMTYVAQKY-SGFPPNKVIG 141 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHHHHHHHHHH-HTSSGGGEEE
T ss_pred EEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHHHHHHHHHh-hCcCcccCcC
Confidence 999999999999999999999999999999999999 8999999999999999999996 8999999765
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=201.36 Aligned_cols=285 Identities=15% Similarity=0.168 Sum_probs=182.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCC--CCCeEEEEEecCCccchhHHHHHHHhccc---CCCCcceEEeCChhhhcC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGT--DQPVILHMLDIPPAAEALNGVKMELVDAA---FPLLKGVVATTDAVEACT 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~--~~~~ev~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~al~ 80 (320)
|||+|||| |+ ...+.|+..-+... -...+|+|+|+++ ++++- ...+.... .....+++.++|..+|++
T Consensus 1 ~KI~iIGa-GS---~~tp~li~~l~~~~~~l~~~ei~L~DId~--~rl~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~ 73 (437)
T cd05298 1 FKIVIAGG-GS---TYTPGIVKSLLDRKEDFPLRELVLYDIDA--ERQEK-VAEAVKILFKENYPEIKFVYTTDPEEAFT 73 (437)
T ss_pred CeEEEECC-cH---HHHHHHHHHHHhCcccCCCCEEEEECCCH--HHHHH-HHHHHHHHHHhhCCCeEEEEECCHHHHhC
Confidence 79999997 43 34444433211000 0135999999985 44433 22222111 112347888999999999
Q ss_pred CCcEEEEeCCCCC------------CCC---CC-----HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH
Q 020875 81 GVNIAVMVGGFPR------------KEG---ME-----RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 81 ~aDvVi~~ag~~~------------~~~---~~-----r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
|||+||.+..+.. +.| ++ -.-...+|++++.++++.|+++| |++++|++|||++++|++
T Consensus 74 gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~~vt~~ 152 (437)
T cd05298 74 DADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAAIVAEA 152 (437)
T ss_pred CCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHH
Confidence 9999999864321 111 11 12256699999999999999999 999999999999999999
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCC-Ccchhhhcc----
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG-EKPVRELVK---- 215 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~-~~~~~~~~~---- 215 (320)
+++. +|..|++|.|+-.. -++..+|+.||+++++|+.-+ .| -+++.++.+++. . |+.+...+.
T Consensus 153 ~~~~---~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~-~G---lNH~~w~~~~~~----~~G~D~~p~l~e~~~ 220 (437)
T cd05298 153 LRRL---FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDY-FG---LNHFGWFTKIYD----KQGEDLLPKLREHVK 220 (437)
T ss_pred HHHH---CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEE-Ee---ecchhhhhheEE----CCCCchHHHHHHHHh
Confidence 9885 67778999998754 578889999999999999764 67 334777777776 3 433221111
Q ss_pred c--------------chhh---------------------------hhHHHHH-----------HhhhhHHHH-------
Q 020875 216 D--------------DAWL---------------------------NGEFITT-----------VQQRGAAII------- 236 (320)
Q Consensus 216 ~--------------~~~~---------------------------~~~~~~~-----------v~~~~~~i~------- 236 (320)
+ ..|. .+++.++ +++...+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~ 300 (437)
T cd05298 221 ENGYLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKII 300 (437)
T ss_pred ccCCCcccccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhh
Confidence 0 0010 0011010 000111110
Q ss_pred hcCCc--cchHH--HHHHHHHHHHHHHhCCCCCcEEEEEEecCCccC-CCCceEEEEEEEEe-CCeEEEecCCCCChhhh
Q 020875 237 KARKL--SSALS--AASSACDHIRDWVLGTPEGTWVSMGVYSDGSYN-VPAGLIYSFPVTCR-NGEWTIVQGTDAILYPM 310 (320)
Q Consensus 237 ~~kg~--~~~~~--~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg-~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~ 310 (320)
..... ..+.+ .+.++++++ ++|.+ |++.+++++++.+|+|+ +|.|+++++||+++ +|+..+- --+|.+...
T Consensus 301 ~~~~~~~~~~~~~~ya~~a~~ii-~aI~~-d~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~-vg~lP~~~~ 377 (437)
T cd05298 301 ETGTAEGSTFHVDVHGEYIVDLA-ASIAY-NTKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLV-VGKIPTFYK 377 (437)
T ss_pred hcCChhhhhhhccchHHHHHHHH-HHHHc-CCCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceecc-cCCCCHHHH
Confidence 00000 01111 234455444 45665 68899999999999995 78999999999999 8988774 345777655
Q ss_pred hcc
Q 020875 311 SFL 313 (320)
Q Consensus 311 ~~l 313 (320)
..+
T Consensus 378 ~l~ 380 (437)
T cd05298 378 GLM 380 (437)
T ss_pred HHH
Confidence 543
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-24 Score=201.76 Aligned_cols=185 Identities=17% Similarity=0.188 Sum_probs=136.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCC--CCCeEEEEEecCCccchhHH---HHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGT--DQPVILHMLDIPPAAEALNG---VKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~--~~~~ev~l~D~~~~~~~~~~---~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|||+|+|| |+ ++.+.|+..-+... -...+|+|+|+++ ++++- .+..+.+.. ....+++.++|..+|++
T Consensus 1 ~KI~iIGg-GS---~~tp~li~~l~~~~~~l~~~ei~L~Did~--~Rl~~v~~l~~~~~~~~-g~~~~v~~ttD~~~Al~ 73 (425)
T cd05197 1 VKIAIIGG-GS---SFTPELVSGLLKTPEELPISEVTLYDIDE--ERLDIILTIAKRYVEEV-GADIKFEKTMDLEDAII 73 (425)
T ss_pred CEEEEECC-ch---HhHHHHHHHHHcChhhCCCCEEEEEcCCH--HHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHhC
Confidence 69999997 43 34544443211111 0235999999985 34432 111221111 11246888999999999
Q ss_pred CCcEEEEeCCCCC------------CCC---CC-----HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH
Q 020875 81 GVNIAVMVGGFPR------------KEG---ME-----RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 81 ~aDvVi~~ag~~~------------~~~---~~-----r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
|||+||.+..+.. +.| ++ ......+|+++++++++.|+++| |++|+|++|||+|++|++
T Consensus 74 gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~di~t~a 152 (425)
T cd05197 74 DADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAGEVTEA 152 (425)
T ss_pred CCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHHHHHHH
Confidence 9999999864321 111 10 12245699999999999999999 999999999999999999
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEc-CCCCccccccccccccCCCCCcchh
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-NHSSSQYPDVNHATVNTAAGEKPVR 211 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G-~hg~~~~~~~S~~~v~~~~~~~~~~ 211 (320)
++++ .|+.|++|.|.. +.|+++.+|+.+|+++++|+..+ +| ||| ++||++++ +|+|+.
T Consensus 153 ~~~~---~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v-~GlnHg----~~~s~~~~----~G~~l~ 211 (425)
T cd05197 153 VRRY---VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQY-AGLNHG----IWLNRVRY----NGGDVT 211 (425)
T ss_pred HHHh---CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEE-EeccCe----EeeEeEEE----CCeecH
Confidence 9986 366788888877 99999999999999999999885 89 998 99999999 666654
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-23 Score=196.25 Aligned_cols=282 Identities=16% Similarity=0.147 Sum_probs=186.5
Q ss_pred CCEEEEEcCCChhHHHHHH--HHH-hcCcCCCCCCeEEEEEecCCccchhH-HHHHHHhcccCCC--CcceEEeCChhhh
Q 020875 5 PVRVLVTGAAGQIGYALVP--MIA-RGVMLGTDQPVILHMLDIPPAAEALN-GVKMELVDAAFPL--LKGVVATTDAVEA 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~--~L~-~~~~~~~~~~~ev~l~D~~~~~~~~~-~~~~dl~~~~~~~--~~~v~~~~~~~~a 78 (320)
++||+|+| +|.+|++.+. .++ ..++.+ .+|+|+|+++ ++++ +... +.+..... ..+++.+++.+++
T Consensus 1 ~~KIaIIG-aGsvg~~~~~~~~i~~~~~l~~----~evvLvDid~--er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIG-AGSTVFTKNLLGDILSVPALRD----AEIALMDIDP--ERLEESEIV-ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEEC-CCHHHhHHHHHHHHhhCccCCC----CEEEEECCCH--HHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHH
Confidence 37999999 5999988776 555 334322 3899999975 4554 3333 44433222 2467778888999
Q ss_pred cCCCcEEEEeCCCC-CCCC--------------CCHHHH--------HHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 79 CTGVNIAVMVGGFP-RKEG--------------MERKDV--------MSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 79 l~~aDvVi~~ag~~-~~~~--------------~~r~~~--------~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
++|||+||++++++ .+++ ++|.+. ..+|+++++++++.|+++| |++|+|++|||+|
T Consensus 73 l~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p~a~iin~tNP~d 151 (431)
T PRK15076 73 LQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC-PDALLLNYVNPMA 151 (431)
T ss_pred hCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC-CCeEEEEcCChHH
Confidence 99999999999886 3333 345566 8899999999999999999 9999999999999
Q ss_pred hhHHHHHHHCCCCCCCcEEEee--hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhh
Q 020875 136 TNALILKEFAPSIPAKNITCLT--RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVREL 213 (320)
Q Consensus 136 ~~~~~~~~~~~~~~~~~i~~~t--~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~ 213 (320)
++|++++ ++|+.|++|.| .+|+. +.+|+.+|+++++|+..+ .| -+++.++.++++ .|+.+...
T Consensus 152 ivt~~~~----~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~-~G---lNH~~W~~~~~~----~G~D~~p~ 216 (431)
T PRK15076 152 MNTWAMN----RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRC-AG---INHMAWYLELER----KGEDLYPE 216 (431)
T ss_pred HHHHHHh----cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEE-Ee---ecchhhheeeeE----CCcchHHH
Confidence 9999987 45677876664 66664 779999999999999885 68 334888888777 33322110
Q ss_pred cc--------------------------c-------c--hhh----hhHHHHHH--------------hhhhHHHH-hcC
Q 020875 214 VK--------------------------D-------D--AWL----NGEFITTV--------------QQRGAAII-KAR 239 (320)
Q Consensus 214 ~~--------------------------~-------~--~~~----~~~~~~~v--------------~~~~~~i~-~~k 239 (320)
+. . + .|- +++..+.. .....+.. ...
T Consensus 217 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (431)
T PRK15076 217 LRAAAAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELA 296 (431)
T ss_pred HHHHHhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhh
Confidence 00 0 0 111 11111111 01111111 111
Q ss_pred CccchHH--HHHHHHHHHHHHHhCCCCCcEEEEEEecCCcc-CCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcc
Q 020875 240 KLSSALS--AASSACDHIRDWVLGTPEGTWVSMGVYSDGSY-NVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFL 313 (320)
Q Consensus 240 g~~~~~~--~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~y-g~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l 313 (320)
+..++.. .+..++.+| ++|.+ +++.++.+.|.-+|.- ++|.|.+.=+||.++ +|+..+- --+|.+..+..+
T Consensus 297 ~~~~~~~~~~~e~a~~ii-~ai~~-~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-~g~lP~~~~~l~ 371 (431)
T PRK15076 297 NAERIEIKRSREYASTII-EAIET-GEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTK-VGDLPPQLAALN 371 (431)
T ss_pred CCCccccccchHHHHHHH-HHHhc-CCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeee-cCCCCHHHHHHH
Confidence 2211100 123344444 45665 6778898888877864 799999999999999 8887654 345766655443
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=185.47 Aligned_cols=282 Identities=18% Similarity=0.172 Sum_probs=181.5
Q ss_pred CEEEEEcCCChhHH-HHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhhcCC
Q 020875 6 VRVLVTGAAGQIGY-ALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTG 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~-~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~al~~ 81 (320)
|||+|+|| |++-. .+...|+.. .-+ ...+|+|+|+++ +++++....-....... ....+..+++..+|++|
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l---~~~ei~L~Did~-~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g 75 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEEL---PVTELVLVDIDE-EEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG 75 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccC---CCCEEEEecCCh-HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC
Confidence 69999997 54422 222333332 211 124999999983 35554322212221111 12467888999999999
Q ss_pred CcEEEEeCCCCCCCCCCHHH--------------------HHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 82 VNIAVMVGGFPRKEGMERKD--------------------VMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~--------------------~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
||+||+++++...++.++++ ...+|+++++++++.|+++| |++++|++|||++++|+++
T Consensus 76 adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~~ivt~a~ 154 (419)
T cd05296 76 ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPAGIVTEAV 154 (419)
T ss_pred CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHH
Confidence 99999998876655544444 36789999999999999999 8999999999999999999
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEc-CCCCccccccccccccCCCCCcchhh-hcc----
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-NHSSSQYPDVNHATVNTAAGEKPVRE-LVK---- 215 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G-~hg~~~~~~~S~~~v~~~~~~~~~~~-~~~---- 215 (320)
++. + +.|++|.|+. +.|+++.+|+.+|+++++|+..+ +| || +.++.+++. .|+.+.. ++.
T Consensus 155 ~k~-~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~v-~GlNH----~~w~~~~~~----~G~D~~p~l~~~~~~ 220 (419)
T cd05296 155 LRH-T---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFIDY-AGLNH----LGWLRRVLL----DGEDVLPELLEDLAA 220 (419)
T ss_pred HHh-c---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEEE-Eeccc----ceeeeeeeE----CCcccHHHHHHHhhh
Confidence 985 3 5678888877 48999999999999999999885 79 88 666666666 3332221 000
Q ss_pred ------cchh--------------------hhhHHHHH-----------HhhhhHHH---H------------hcCCccc
Q 020875 216 ------DDAW--------------------LNGEFITT-----------VQQRGAAI---I------------KARKLSS 243 (320)
Q Consensus 216 ------~~~~--------------------~~~~~~~~-----------v~~~~~~i---~------------~~kg~~~ 243 (320)
+..| ..++..+. +.....++ . ..++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~- 299 (419)
T cd05296 221 LLSFEEGLLFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGA- 299 (419)
T ss_pred ccccccccchHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCc-
Confidence 0001 00111110 00000111 1 111111
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCcc-CCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcc
Q 020875 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY-NVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFL 313 (320)
Q Consensus 244 ~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~y-g~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l 313 (320)
++ +..++.+|. +|.+ +++.++-+.|.-+|.- ++|.+.+.=+||.++ +|+..+- --+|.+..+..+
T Consensus 300 ~y--~e~a~~ii~-ai~~-~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-vg~lP~~~~~l~ 366 (419)
T cd05296 300 GY--SEAALALIS-AIYN-DKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLP-VGPLPPAILGLI 366 (419)
T ss_pred ch--HHHHHHHHH-HHhc-CCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecc-CCCCCHHHHHHH
Confidence 11 133344444 4554 5678888888878864 799999999999999 8876553 335766655443
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=174.33 Aligned_cols=178 Identities=19% Similarity=0.188 Sum_probs=137.9
Q ss_pred CEEEEEcCCChhHHHHHH--HHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhhcC
Q 020875 6 VRVLVTGAAGQIGYALVP--MIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACT 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~--~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~al~ 80 (320)
+||+|+| +|.+|++++. .++.. ...+ .+|+|+|+++ ++++....++.+.... ...++..+++++++++
T Consensus 1 ~KIaIIG-aGs~G~a~a~~~~i~~~~~~~g----~eV~L~Did~--e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~ 73 (423)
T cd05297 1 IKIAFIG-AGSVVFTKNLVGDLLKTPELSG----STIALMDIDE--ERLETVEILAKKIVEELGAPLKIEATTDRREALD 73 (423)
T ss_pred CeEEEEC-CChHHhHHHHHHHHhcCCCCCC----CEEEEECCCH--HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence 5899999 5999998776 45433 3221 3899999975 5666666666544322 2356777889999999
Q ss_pred CCcEEEEeCCCCCCCCCCH----------------------HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH
Q 020875 81 GVNIAVMVGGFPRKEGMER----------------------KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r----------------------~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~ 138 (320)
|||+||.+++....++.++ .....+|++.+.++++.+++++ |+++++++|||++++|
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~-p~a~~i~~tNPv~i~t 152 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELC-PDAWLLNYANPMAELT 152 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHC-CCCEEEEcCChHHHHH
Confidence 9999999987654433333 2355689999999999999999 7999999999999999
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEc-CCCCccccccccccc
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-NHSSSQYPDVNHATV 201 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G-~hg~~~~~~~S~~~v 201 (320)
+++++. ++ .|++|.|+. +.++++.+|+.+++++++|+..+ +| || +.+|.+++.
T Consensus 153 ~~~~k~-~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~-~GlNH----~~w~~~~~~ 206 (423)
T cd05297 153 WALNRY-TP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQV-AGINH----MAWLLKFEY 206 (423)
T ss_pred HHHHHh-CC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEE-Eeecc----HhhhhhheE
Confidence 999986 43 577777755 78999999999999999999885 78 55 777777776
|
linked to 3D####ucture |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=161.11 Aligned_cols=287 Identities=18% Similarity=0.200 Sum_probs=179.2
Q ss_pred CCCEEEEEcCCChhHHHHH-H-HHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc---CCCCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAAGQIGYALV-P-MIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA---FPLLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la-~-~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a 78 (320)
++.||+|||| |+++.+.. . .|....-+ +..++.|+|+++ ++++ ...++.+.- .....+++.+++..+|
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l---~~~el~L~Did~--~r~~-~i~~~~~~~v~~~g~~~kv~~ttd~~eA 74 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEEL---PVRELALYDIDE--ERLK-IIAILAKKLVEEAGAPVKVEATTDRREA 74 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccC---CcceEEEEeCCH--HHHH-HHHHHHHHHHHhhCCCeEEEEecCHHHH
Confidence 4579999996 66655432 1 22222212 235999999985 3443 222222211 0112567888999999
Q ss_pred cCCCcEEEEeCCCC------------CCCCCC--------HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH
Q 020875 79 CTGVNIAVMVGGFP------------RKEGME--------RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 79 l~~aDvVi~~ag~~------------~~~~~~--------r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~ 138 (320)
|+|||+|+.+.-+. .+.|.- ..-...++++.+.+|++.|+++| |++|++++|||+..+|
T Consensus 75 l~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~-P~Aw~lNytNP~~~vT 153 (442)
T COG1486 75 LEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVC-PNAWMLNYTNPAAIVT 153 (442)
T ss_pred hcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhC-CCceEEeccChHHHHH
Confidence 99999999985331 122211 11234589999999999999999 9999999999999999
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCC-CCeeeeEEEcCCCCccccccccccccCCCCCcchhhhc---
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQV-SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV--- 214 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~-~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~--- 214 (320)
+++.++ +|.-|++|.|+.. .-....+|+.|++++ ++++.- +.| -+++.+|..++. .|.++..-+
T Consensus 154 eAv~r~---~~~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~~~-~aG---lNH~~w~~~~~~----~G~d~~p~l~~~ 221 (442)
T COG1486 154 EAVRRL---YPKIKIVGLCHGP-IGIAMELAEVLGLEPREDLRYR-VAG---LNHMVWILRVRD----DGEDLYPELLEA 221 (442)
T ss_pred HHHHHh---CCCCcEEeeCCch-HHHHHHHHHHhCCCchhceeEE-Eee---chhhhhhhHhhh----cCccchHHHHHH
Confidence 999986 4533889999874 466888999999975 999965 478 334777777766 222111000
Q ss_pred ---------------ccchhh-----------------------------hhHH------HHHHhhhhHH----------
Q 020875 215 ---------------KDDAWL-----------------------------NGEF------ITTVQQRGAA---------- 234 (320)
Q Consensus 215 ---------------~~~~~~-----------------------------~~~~------~~~v~~~~~~---------- 234 (320)
.+..|. ..++ .++++++-.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~ 301 (442)
T COG1486 222 LEEGGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPEL 301 (442)
T ss_pred HhccccCCccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhh
Confidence 000000 0000 0011111000
Q ss_pred -----HHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCc-cCCCCceEEEEEEEEe-CCeEEEecCCCCCh
Q 020875 235 -----IIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR-NGEWTIVQGTDAIL 307 (320)
Q Consensus 235 -----i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~-yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~ 307 (320)
..+.++.+.-.+ +..++.++ ++|.. +++.++.+.|.-+|. -++|.|...=+||.++ +|+.-.. ..+|.+
T Consensus 302 ~~~p~~~~~~~~~~~~~-~e~a~~ii-~Ai~~-~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~-~g~lP~ 377 (442)
T COG1486 302 KEKPEELEKRIGAGKYS-SEYASNII-NAIEN-NKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLA-VGDLPE 377 (442)
T ss_pred hcCchhhhhcCCccccc-HHHHHHHH-HHHhc-CCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccc-cCCCCH
Confidence 011111110011 23344444 45664 678999999988886 5899999999999999 8998865 688888
Q ss_pred hhhhccc
Q 020875 308 YPMSFLS 314 (320)
Q Consensus 308 ~E~~~l~ 314 (320)
.-.+.++
T Consensus 378 ~~~~l~~ 384 (442)
T COG1486 378 FVKGLMH 384 (442)
T ss_pred HHHHHHH
Confidence 7766443
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=132.22 Aligned_cols=156 Identities=22% Similarity=0.248 Sum_probs=104.9
Q ss_pred EEEEEcCCChhHHHHH-H-HHHhcCcCCCCCCeEEEEEecCCccchhHHH---HHHHhcccCCCCcceEEeCChhhhcCC
Q 020875 7 RVLVTGAAGQIGYALV-P-MIARGVMLGTDQPVILHMLDIPPAAEALNGV---KMELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 7 kI~IiGA~G~vG~~la-~-~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~---~~dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
||+|+|| |++-.+.. . .+.....+ +..+|+|+|+++ ++++.. +..+.+.. ....+++.++|..+|++|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l---~~~ei~L~Did~--~RL~~~~~~~~~~~~~~-~~~~~v~~ttd~~eAl~g 73 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEEL---SGSEIVLMDIDE--ERLEIVERLARRMVEEA-GADLKVEATTDRREALEG 73 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTS---TEEEEEEE-SCH--HHHHHHHHHHHHHHHHC-TTSSEEEEESSHHHHHTT
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccC---CCcEEEEEcCCH--HHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhCC
Confidence 8999996 66655432 2 23332222 235999999985 555422 11222111 123467889999999999
Q ss_pred CcEEEEeCCC------------CCCCCCC----------HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH
Q 020875 82 VNIAVMVGGF------------PRKEGME----------RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL 139 (320)
Q Consensus 82 aDvVi~~ag~------------~~~~~~~----------r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~ 139 (320)
||+||++..+ |.+.|.. -.....++++.+.++++.|+++| |++|++++|||+..+|+
T Consensus 74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLINYTNPMGIVTE 152 (183)
T ss_dssp ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEEE-SSSHHHHHH
T ss_pred CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEeccChHHHHHH
Confidence 9999998653 2233211 12355699999999999999999 99999999999999999
Q ss_pred HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCC
Q 020875 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNV 174 (320)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v 174 (320)
++.+. +|..|++|.|+.. .-+...+|+.||+
T Consensus 153 a~~r~---~~~~k~vGlCh~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 153 ALSRY---TPKIKVVGLCHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHH---STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred HHHHh---CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence 99986 3445799999885 4667789998874
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.8e-13 Score=121.45 Aligned_cols=170 Identities=16% Similarity=0.137 Sum_probs=118.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al~ 80 (320)
..++|+||||+||||++++..|+++|+ +|+-.-|++..++-.....+|...... +..++....++.+|++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY-------~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY-------TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC-------EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh
Confidence 568999999999999999999999998 676555543222222234455432211 2467777778999999
Q ss_pred CCcEEEEeCCCCCCCCC-CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCC--------
Q 020875 81 GVNIAVMVGGFPRKEGM-ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK-------- 151 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~-~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~-------- 151 (320)
+||.|||+|........ ...+++..+++++.+++++++++. .++.+++|++...+.+- .+..+++
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~--sVkrvV~TSS~aAv~~~----~~~~~~~~vvdE~~w 151 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK--SVKRVVYTSSTAAVRYN----GPNIGENSVVDEESW 151 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC--CcceEEEeccHHHhccC----CcCCCCCcccccccC
Confidence 99999999976432222 245789999999999999999984 68889999876443321 0111111
Q ss_pred ---------c-EEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEc
Q 020875 152 ---------N-ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186 (320)
Q Consensus 152 ---------~-i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G 186 (320)
+ .|..+..-..+....+|+.-+++...+.-..|+|
T Consensus 152 sd~~~~~~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~G 196 (327)
T KOG1502|consen 152 SDLDFCRCKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFG 196 (327)
T ss_pred CcHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceEC
Confidence 1 2556655567888888888888766665555566
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=110.09 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=119.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCCCCcceEEeCChhhhcC--CC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFPLLKGVVATTDAVEACT--GV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~~~~~v~~~~~~~~al~--~a 82 (320)
|+|+||||+|+||||.+..|++.|+ +++++|...+ +...-+... ......++....-+.+.|+ ..
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~-------~vvV~DNL~~-----g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH-------EVVVLDNLSN-----GHKIALLKLQFKFYEGDLLDRALLTAVFEENKI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC-------eEEEEecCCC-----CCHHHhhhccCceEEeccccHHHHHHHHHhcCC
Confidence 6899999999999999999999998 8999998542 111111111 1122345554444555554 68
Q ss_pred cEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh----HHHHHHHCCCCCCCcEEEe
Q 020875 83 NIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN----ALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 83 DvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~----~~~~~~~~~~~~~~~i~~~ 156 (320)
|.|||.|+.... +-+.+.+++..|+-.+..+++.|++++ ++-+++|+++.+- +--+.+. .-..|.+.||-
T Consensus 69 daViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~g---v~~~vFSStAavYG~p~~~PI~E~-~~~~p~NPYG~ 144 (329)
T COG1087 69 DAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTG---VKKFIFSSTAAVYGEPTTSPISET-SPLAPINPYGR 144 (329)
T ss_pred CEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhC---CCEEEEecchhhcCCCCCcccCCC-CCCCCCCcchh
Confidence 999999986542 224578899999999999999999997 4557777765321 0001111 11224567999
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
|+|-..++.+-+++..+.+..-+|.+++.|-|
T Consensus 145 sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~ 176 (329)
T COG1087 145 SKLMSEEILRDAAKANPFKVVILRYFNVAGAC 176 (329)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEecccccCC
Confidence 99999999999999999999999999999877
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=116.05 Aligned_cols=173 Identities=14% Similarity=0.075 Sum_probs=112.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHh-cc-cC------CCCcceEEeCCh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV-DA-AF------PLLKGVVATTDA 75 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~-~~-~~------~~~~~v~~~~~~ 75 (320)
+++||+||||+||+|++++..|+.+|+ +|+.+|+... . ......++. .. .. ....++.....+
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-------~V~~~d~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l 84 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ-------TVIGLDNFST-G-YQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDC 84 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEeCCCC-c-chhhhhhhhhccccccCCceEEEEccCCCHHHH
Confidence 357999999999999999999999886 8999997531 1 000000110 00 00 011233322345
Q ss_pred hhhcCCCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCC
Q 020875 76 VEACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIP 149 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~ 149 (320)
.+.++++|+|||+|+....+ ..+..+....|+..+.++++.+++.+ .. ++|++|+. .+... ...+. ....
T Consensus 85 ~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~-~~v~~SS~-~vyg~~~~~~~~e~-~~~~ 160 (348)
T PRK15181 85 QKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAH-VS-SFTYAASS-STYGDHPDLPKIEE-RIGR 160 (348)
T ss_pred HHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CC-eEEEeech-HhhCCCCCCCCCCC-CCCC
Confidence 56678999999999864321 23455678899999999999999875 22 56666532 11100 00010 1112
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
|...|+.+++...++...+++..+++...+|...|+|.+.
T Consensus 161 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~ 200 (348)
T PRK15181 161 PLSPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQ 200 (348)
T ss_pred CCChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCC
Confidence 3347899998888887778888899999999999999753
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.2e-11 Score=113.42 Aligned_cols=170 Identities=13% Similarity=0.052 Sum_probs=109.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
.++|||+||||+||||++|+..|+.+|+ +|+.+|+... .... ....+.. . +. .++....-...++.++
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-------~V~~ldr~~~-~~~~-~~~~~~~-~-~~-~~~~~~Di~~~~~~~~ 185 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-------EVIVIDNFFT-GRKE-NLVHLFG-N-PR-FELIRHDVVEPILLEV 185 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEeCCCC-ccHh-Hhhhhcc-C-Cc-eEEEECccccccccCC
Confidence 4569999999999999999999999887 8999997521 1111 0111110 0 00 0111111123456789
Q ss_pred cEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH----HHHHHHC----CCCCCCc
Q 020875 83 NIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFA----PSIPAKN 152 (320)
Q Consensus 83 DvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~----~~~~~~~----~~~~~~~ 152 (320)
|+|||+|+.... ...+..+++..|+..+.++++.+++.+ .++|++|+.. +.. ....+.. .-..+..
T Consensus 186 D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g---~r~V~~SS~~-VYg~~~~~p~~E~~~~~~~p~~p~s 261 (436)
T PLN02166 186 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG---ARFLLTSTSE-VYGDPLEHPQKETYWGNVNPIGERS 261 (436)
T ss_pred CEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC---CEEEEECcHH-HhCCCCCCCCCccccccCCCCCCCC
Confidence 999999975431 223456788999999999999999875 4677666421 110 0000100 0111234
Q ss_pred EEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 153 ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 153 i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
.|+.++....++...+++..+++..-+|..+|+|.+
T Consensus 262 ~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~ 297 (436)
T PLN02166 262 CYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPR 297 (436)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCC
Confidence 688888888888777888889888888888889964
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-11 Score=111.37 Aligned_cols=175 Identities=15% Similarity=0.134 Sum_probs=113.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc-cc----C-CCCcceEEeCC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AA----F-PLLKGVVATTD 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~-~~----~-~~~~~v~~~~~ 74 (320)
|.+..++|+||||+||||++++..|+..|+ +|++++++. +.+... .++.. .. . ....++.....
T Consensus 1 ~~~~~k~iLVTGatGfIGs~l~~~L~~~G~-------~V~~~~r~~--~~~~~~-~~~~~~~~~~~~~~~v~~Dl~d~~~ 70 (351)
T PLN02650 1 MGSQKETVCVTGASGFIGSWLVMRLLERGY-------TVRATVRDP--ANVKKV-KHLLDLPGATTRLTLWKADLAVEGS 70 (351)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHCCC-------EEEEEEcCc--chhHHH-HHHHhccCCCCceEEEEecCCChhh
Confidence 778889999999999999999999999887 788777653 222211 11111 00 0 01234444445
Q ss_pred hhhhcCCCcEEEEeCCCCCCCCCC-HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH-----HHHHHHCCCC
Q 020875 75 AVEACTGVNIAVMVGGFPRKEGME-RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-----LILKEFAPSI 148 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~~~-r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~-----~~~~~~~~~~ 148 (320)
+.++++++|+|||+|+.......+ ..+.+..|+..+.++++.+.+.+ .-.++|++|+....-. ....+ ..+
T Consensus 71 ~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~~~r~v~~SS~~~~~~~~~~~~~~~E--~~~ 147 (351)
T PLN02650 71 FDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAK-TVRRIVFTSSAGTVNVEEHQKPVYDE--DCW 147 (351)
T ss_pred HHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcC-CceEEEEecchhhcccCCCCCCccCc--ccC
Confidence 667888999999999754321112 24577899999999999998864 2235666664321100 00001 000
Q ss_pred ----------CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 149 ----------PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 149 ----------~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
++...|+.+++....+...+++..|++...++...|+|..
T Consensus 148 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~ 197 (351)
T PLN02650 148 SDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPF 197 (351)
T ss_pred CchhhhhccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCC
Confidence 0112578888888888888888899998888888889974
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-11 Score=108.69 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=104.9
Q ss_pred EEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCChhhhcCCCcEEE
Q 020875 9 LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEACTGVNIAV 86 (320)
Q Consensus 9 ~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~al~~aDvVi 86 (320)
+||||+||+|++++..|+++|.. .+|+.+|+.+...... ++..... ....+++...++.++++++|+||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~-----~~Vr~~d~~~~~~~~~----~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~ 71 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYI-----YEVRVLDRSPPPKFLK----DLQKSGVKEYIQGDITDPESLEEALEGVDVVF 71 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCc-----eEEEEcccccccccch----hhhcccceeEEEeccccHHHHHHHhcCCceEE
Confidence 48999999999999999999842 2899999865322111 1221111 22356666678899999999999
Q ss_pred EeCCCCCCCC-CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH------HHH-HHCCCCCCC--cEEEe
Q 020875 87 MVGGFPRKEG-MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL------ILK-EFAPSIPAK--NITCL 156 (320)
Q Consensus 87 ~~ag~~~~~~-~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~------~~~-~~~~~~~~~--~i~~~ 156 (320)
|+|+.....+ ..+.++...|+.+++++++++++.+ ++.+++|++++++.. +.. .....+|+. ..|+-
T Consensus 72 H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~---VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~ 148 (280)
T PF01073_consen 72 HTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAG---VKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAE 148 (280)
T ss_pred EeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcC---CCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHH
Confidence 9998643333 4567789999999999999999864 566666666554321 000 000112221 24666
Q ss_pred ehhhHHHHHHHHHH---H--cCCCCCCeeeeEEEcCC
Q 020875 157 TRLDHNRALGQISE---K--LNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 157 t~ld~~r~~~~~a~---~--l~v~~~~v~~~~v~G~h 188 (320)
|+...+++...... + -++....+|-..|||+.
T Consensus 149 SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~ 185 (280)
T PF01073_consen 149 SKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPG 185 (280)
T ss_pred HHHHHHHHHHhhcccccccccceeEEEEeccEEeCcc
Confidence 66655555433322 0 12344456666678863
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=111.71 Aligned_cols=170 Identities=13% Similarity=0.045 Sum_probs=107.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHH-HhcccCCCCcceEEeCChhhhcC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-LVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~d-l~~~~~~~~~~v~~~~~~~~al~ 80 (320)
+.+.|||+||||+||||++++..|+++|+ +|+.+|+... . ....... +.+.. .++....-...++.
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-------~V~~ld~~~~-~-~~~~~~~~~~~~~----~~~i~~D~~~~~l~ 182 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-------SVIVVDNFFT-G-RKENVMHHFSNPN----FELIRHDVVEPILL 182 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcC-------EEEEEeCCCc-c-chhhhhhhccCCc----eEEEECCccChhhc
Confidence 34568999999999999999999999987 8888886421 1 1111111 11100 01111111234567
Q ss_pred CCcEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH----HHHHHHC----CCCCC
Q 020875 81 GVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFA----PSIPA 150 (320)
Q Consensus 81 ~aDvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~----~~~~~~~----~~~~~ 150 (320)
++|+|||+|+.... ...+..+.+..|+..+.++++++++.+ .++|++|+.. +.. ....+.. ....+
T Consensus 183 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g---~r~V~~SS~~-VYg~~~~~p~~E~~~~~~~P~~~ 258 (442)
T PLN02206 183 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSE-VYGDPLQHPQVETYWGNVNPIGV 258 (442)
T ss_pred CCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC---CEEEEECChH-HhCCCCCCCCCccccccCCCCCc
Confidence 89999999986431 123456788999999999999998874 4677666532 100 0000100 00111
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
...|+.++....++...+.+..+++..-++...++|.+
T Consensus 259 ~s~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~ 296 (442)
T PLN02206 259 RSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPR 296 (442)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 23577888888787777788889888888888888965
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.6e-11 Score=111.78 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=110.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|.+..|||+||||+||||++++..|.+.|+ +|+.+|+..+ ...... .+ .......++.....+.++++
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~-------~V~~v~r~~~-~~~~~~--~~--~~~~~~~Dl~d~~~~~~~~~ 84 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGH-------YIIASDWKKN-EHMSED--MF--CHEFHLVDLRVMENCLKVTK 84 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCC-------EEEEEEeccc-cccccc--cc--cceEEECCCCCHHHHHHHHh
Confidence 445678999999999999999999999887 8999997531 111100 00 00001122322223455678
Q ss_pred CCcEEEEeCCCCCCCC---CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH--------HHHHHC-CCC
Q 020875 81 GVNIAVMVGGFPRKEG---MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL--------ILKEFA-PSI 148 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~---~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~--------~~~~~~-~~~ 148 (320)
++|+|||+|+.....+ ......+..|+....++++.+++.+ . .++|++|+.. +-.. -+.+.. ...
T Consensus 85 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~-v-k~~V~~SS~~-vYg~~~~~~~~~~~~E~~~~p~ 161 (370)
T PLN02695 85 GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARING-V-KRFFYASSAC-IYPEFKQLETNVSLKESDAWPA 161 (370)
T ss_pred CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhC-C-CEEEEeCchh-hcCCccccCcCCCcCcccCCCC
Confidence 9999999997532111 1233456789999999999998875 2 2566666532 1000 011100 012
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.+...++.++....++...+++..+++...+|...|+|.++
T Consensus 162 ~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~ 202 (370)
T PLN02695 162 EPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFG 202 (370)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence 23446788888888877778888999999999998999865
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=110.59 Aligned_cols=171 Identities=9% Similarity=0.057 Sum_probs=107.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHh----cccCC-CCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELV----DAAFP-LLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~----~~~~~-~~~~v~~~~~~~~ 77 (320)
++|||+||||+||+|++++..|+++ ++ +|+.+|++. ++.... .... +.... ...++....++.+
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~-------~V~~l~r~~--~~~~~l-~~~~~~~~~~~~~~~~~Dl~d~~~l~~ 82 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH-------KVLALDVYN--DKIKHL-LEPDTVPWSGRIQFHRINIKHDSRLEG 82 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC-------EEEEEecCc--hhhhhh-hccccccCCCCeEEEEcCCCChHHHHH
Confidence 5689999999999999999999987 45 788888753 222110 0000 00000 1123333345667
Q ss_pred hcCCCcEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHC------
Q 020875 78 ACTGVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFA------ 145 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~------ 145 (320)
+++++|+|||+|+.... ......+.+..|+....++++.+++.+ .++|++|+.. +... .+.+..
T Consensus 83 ~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~---~r~v~~SS~~-vYg~~~~~~~~e~~p~~~~~ 158 (386)
T PLN02427 83 LIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN---KRLIHFSTCE-VYGKTIGSFLPKDHPLRQDP 158 (386)
T ss_pred HhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC---CEEEEEeeee-eeCCCcCCCCCccccccccc
Confidence 88899999999986432 112334566789999999999988764 3667666521 1000 000000
Q ss_pred ---------CC--C----CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 146 ---------PS--I----PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 146 ---------~~--~----~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
+. + .+...|+.++....++...+++..+++..-+|...|+|.+
T Consensus 159 ~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 216 (386)
T PLN02427 159 AFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPR 216 (386)
T ss_pred ccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCC
Confidence 00 0 0112477788877777777788889999999988899965
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.3e-10 Score=104.49 Aligned_cols=174 Identities=11% Similarity=0.107 Sum_probs=109.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc----cC-CCCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA----AF-PLLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~a 78 (320)
+++||+||||+||+|++++..|++.|+ +|++++++.. ... ...++... .. ....+++...++.+.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~-------~V~~~~r~~~--~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 77 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY-------AVNTTVRDPE--NQK-KIAHLRALQELGDLKIFGADLTDEESFEAP 77 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC-------EEEEEECCCC--CHH-HHHHHHhcCCCCceEEEEcCCCChHHHHHH
Confidence 457999999999999999999999886 7776666431 111 11111110 00 011234333446677
Q ss_pred cCCCcEEEEeCCCCCCCCCC-HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH-------HHHHHH------
Q 020875 79 CTGVNIAVMVGGFPRKEGME-RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-------LILKEF------ 144 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~~-r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~-------~~~~~~------ 144 (320)
++++|+|||+|+.......+ ..+++..|+..+.++++.+.+.. .-.++|++|+-...-. ..+.+.
T Consensus 78 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~-~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~ 156 (338)
T PLN00198 78 IAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK-SVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVE 156 (338)
T ss_pred HhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEeecceeeeccCCCCCCceeccccCCchh
Confidence 88999999999853222222 23467899999999999998863 2235666654221100 000000
Q ss_pred --CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 145 --APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 145 --~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
....++...|+.++....++...+++..+++...+|...|+|.+
T Consensus 157 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 157 FLTSEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS 202 (338)
T ss_pred hhhhcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence 00123344688888888888888888899999889988899975
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=111.29 Aligned_cols=178 Identities=13% Similarity=0.167 Sum_probs=109.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc-h-------h---HHHHHHH---h---cccC-CC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-A-------L---NGVKMEL---V---DAAF-PL 65 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~-~-------~---~~~~~dl---~---~~~~-~~ 65 (320)
+++||+||||+||||++++..|+++|+ +|+++|+..... . + ......+ . .... ..
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v 118 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY-------EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELY 118 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEE
Confidence 357999999999999999999999887 899988531100 0 0 0000000 0 0000 11
Q ss_pred CcceEEeCChhhhcC--CCcEEEEeCCCCCCC--CCCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh--
Q 020875 66 LKGVVATTDAVEACT--GVNIAVMVGGFPRKE--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-- 136 (320)
Q Consensus 66 ~~~v~~~~~~~~al~--~aDvVi~~ag~~~~~--~~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~-- 136 (320)
..++.....+.++++ ++|+|||+|+....+ ..+. ...+..|+..+.++++.+++++ ...++|.+|...-.
T Consensus 119 ~~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g-v~~~~V~~SS~~vYG~ 197 (442)
T PLN02572 119 VGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA-PDCHLVKLGTMGEYGT 197 (442)
T ss_pred ECCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhC-CCccEEEEecceecCC
Confidence 134433334556666 489999998653321 1111 2346789999999999999886 33456655532100
Q ss_pred ----hHH-HHH------HHCC--CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 137 ----NAL-ILK------EFAP--SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 137 ----~~~-~~~------~~~~--~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
+.. .+. +... ...+...|+.+++....+...+++.+|++...+|...|+|.+.
T Consensus 198 ~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~ 263 (442)
T PLN02572 198 PNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 263 (442)
T ss_pred CCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence 000 000 0000 1123347999999888888889999999999999999999764
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-10 Score=102.60 Aligned_cols=166 Identities=20% Similarity=0.212 Sum_probs=101.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc----ccC-----CCCcceEEeCChhhh
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD----AAF-----PLLKGVVATTDAVEA 78 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~----~~~-----~~~~~v~~~~~~~~a 78 (320)
|+||||+|++|+.|+..|++.+.. +|+++|+++ ..+.....++.. ... +...+++....+..+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~------~lil~d~~E--~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPK------KLILFDRDE--NKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-S------EEEEEES-H--HHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCC------eEEEeCCCh--hHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence 789999999999999999987652 899999985 445444555521 111 224566666667788
Q ss_pred cC--CCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc-CcchhhHHHHHHHCCCCCCCcE
Q 020875 79 CT--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPANTNALILKEFAPSIPAKNI 153 (320)
Q Consensus 79 l~--~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s-nP~~~~~~~~~~~~~~~~~~~i 153 (320)
++ +.|+|||+|+....+ .....+.+..|+-.++++++++.+++ -+ ++|.+| .- + ..|.++
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~-v~-~~v~ISTDK-----------A--v~Ptnv 137 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHG-VE-RFVFISTDK-----------A--VNPTNV 137 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT--S-EEEEEEECG-----------C--SS--SH
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEccccc-----------c--CCCCcH
Confidence 88 999999999875432 13467789999999999999999986 44 455554 21 1 112344
Q ss_pred EEeehhhHHHHHHHHHHHc---CCCCCCeeeeEEEcCCCCccccccc
Q 020875 154 TCLTRLDHNRALGQISEKL---NVQVSDVKNVIIWGNHSSSQYPDVN 197 (320)
Q Consensus 154 ~~~t~ld~~r~~~~~a~~l---~v~~~~v~~~~v~G~hg~~~~~~~S 197 (320)
.|.|+.-..++-...++.. +.....||.-+|+|..| |.+|.|-
T Consensus 138 mGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~G-SVip~F~ 183 (293)
T PF02719_consen 138 MGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRG-SVIPLFK 183 (293)
T ss_dssp HHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTT-SCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCC-cHHHHHH
Confidence 4556555666666555554 33445567667777554 4677663
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.6e-10 Score=102.44 Aligned_cols=173 Identities=14% Similarity=0.082 Sum_probs=107.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-----c-CCCCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-----A-FPLLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-----~-~~~~~~v~~~~~~~~ 77 (320)
+.+||+||||+||||++++..|+.+|+ +|++++++... .. ....+... . .....++.....+.+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~-------~V~~~~r~~~~--~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY-------TVKATVRDPND--PK-KTEHLLALDGAKERLHLFKANLLEEGSFDS 72 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC-------EEEEEEcCCCc--hh-hHHHHHhccCCCCceEEEeccccCcchHHH
Confidence 457999999999999999999999987 78877775321 11 11111110 0 011234444445777
Q ss_pred hcCCCcEEEEeCCCCCCCCCCH-HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH---------HHHHCCC
Q 020875 78 ACTGVNIAVMVGGFPRKEGMER-KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI---------LKEFAPS 147 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~~r-~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~---------~~~~~~~ 147 (320)
+++++|+|||+|+......... .+.+..|+..+.++++.+.+.... .++|++|+ .....+. +.+..+.
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~~v~~SS-~~~~~y~~~~~~~~~~~~E~~~~ 150 (322)
T PLN02662 73 VVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSV-KRVVVTSS-MAAVAYNGKPLTPDVVVDETWFS 150 (322)
T ss_pred HHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEccC-HHHhcCCCcCCCCCCcCCcccCC
Confidence 8899999999998643222223 367889999999999998876212 24555553 2211110 0000000
Q ss_pred CC-----CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 148 IP-----AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 148 ~~-----~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
.| ....++.++....++...+++..+++...++...++|..
T Consensus 151 ~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~ 196 (322)
T PLN02662 151 DPAFCEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPL 196 (322)
T ss_pred ChhHhhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCC
Confidence 01 012466777777777666778889988888888888864
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.7e-10 Score=102.04 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=107.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC-cE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV-NI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a-Dv 84 (320)
|+|+||||+||||++++..|+++|+ +|+.+|+.... ..... .+.. ....+++......+.++++ |.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~---~~~~-~~~~d~~~~~~~~~~~~~~~d~ 67 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH-------DVRGLDRLRDG--LDPLL---SGVE-FVVLDLTDRDLVDELAKGVPDA 67 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCC-------eEEEEeCCCcc--ccccc---cccc-eeeecccchHHHHHHHhcCCCE
Confidence 3599999999999999999999987 89999985421 11000 0000 0011122212345566777 99
Q ss_pred EEEeCCCCCCCCCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH-H----HHHHH-CCCCCCCcEEE
Q 020875 85 AVMVGGFPRKEGME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-L----ILKEF-APSIPAKNITC 155 (320)
Q Consensus 85 Vi~~ag~~~~~~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~-~----~~~~~-~~~~~~~~i~~ 155 (320)
|||+|+........ ..++...|+..++++++++++.+ ..++|. +++....- . .+.+. .+..|. ..++
T Consensus 68 vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~--~~~~v~-~ss~~~~~~~~~~~~~~E~~~~~~p~-~~Yg 143 (314)
T COG0451 68 VIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAG--VKRFVF-ASSVSVVYGDPPPLPIDEDLGPPRPL-NPYG 143 (314)
T ss_pred EEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcC--CCeEEE-eCCCceECCCCCCCCcccccCCCCCC-CHHH
Confidence 99999876543332 23588999999999999999843 234444 44432111 0 11110 011111 1478
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCc
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSS 191 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~ 191 (320)
.+++...+.....++..+++...+|...|+|.+...
T Consensus 144 ~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~ 179 (314)
T COG0451 144 VSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKP 179 (314)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCC
Confidence 898888888888888888999999987789965433
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-10 Score=103.01 Aligned_cols=177 Identities=14% Similarity=0.070 Sum_probs=112.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-c----C-CCCcceEEeCC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-A----F-PLLKGVVATTD 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~----~-~~~~~v~~~~~ 74 (320)
|.-+.++|+||||+|+||++++..|++.|+ +|++.+++.. ..... ..+... . . ....++....+
T Consensus 1 ~~~~~k~vlVtG~~G~IG~~l~~~L~~~G~-------~V~~~~r~~~--~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~ 70 (325)
T PLN02989 1 MADGGKVVCVTGASGYIASWIVKLLLFRGY-------TINATVRDPK--DRKKT-DHLLALDGAKERLKLFKADLLDEGS 70 (325)
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEEcCCc--chhhH-HHHHhccCCCCceEEEeCCCCCchH
Confidence 666778999999999999999999999987 7877766532 11111 111100 0 0 01234444445
Q ss_pred hhhhcCCCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH--------HHHHH
Q 020875 75 AVEACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL--------ILKEF 144 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~--------~~~~~ 144 (320)
..++++++|+|||+|+..... .....+.+..|+..+.++++.+.++. ...++|++|+-...... .+.+.
T Consensus 71 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~-~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~ 149 (325)
T PLN02989 71 FELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVS-SVKRVILTSSMAAVLAPETKLGPNDVVDET 149 (325)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcC-CceEEEEecchhheecCCccCCCCCccCcC
Confidence 667788999999999864321 12234677899999999999998763 22456666643211100 01110
Q ss_pred CCCCC-----CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 145 APSIP-----AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 145 ~~~~~-----~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
.+..| +...|+.+++...++...+++..+++...+|...++|..
T Consensus 150 ~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~ 198 (325)
T PLN02989 150 FFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI 198 (325)
T ss_pred CCCchhHhcccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence 00001 123588888888888888888889988888888888954
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=102.20 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=106.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cC-CCCcceEEeCChhhhcCC-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF-PLLKGVVATTDAVEACTG- 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~al~~- 81 (320)
.++|+||||+||+|++++..|++.|+ +|+.+|++... .......+... .. ....++....++.+.+++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA-------EVYGYSLDPPT--SPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEF 74 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC-------EEEEEeCCCcc--chhHHHHHhhcCCceEEEccCCCHHHHHHHHhhc
Confidence 47999999999999999999999887 78888876421 11111111100 00 011233333344455554
Q ss_pred -CcEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH----HHHHHHCCCCCCCcEE
Q 020875 82 -VNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNIT 154 (320)
Q Consensus 82 -aDvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~----~~~~~~~~~~~~~~i~ 154 (320)
.|+|||+|+.+.. ...+....+..|+....++++.+++.+ ...++|++|+..-.-. .-..+ ....++...|
T Consensus 75 ~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~iv~~SS~~vyg~~~~~~~~~e-~~~~~p~~~Y 152 (349)
T TIGR02622 75 KPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIG-SVKAVVNVTSDKCYRNDEWVWGYRE-TDPLGGHDPY 152 (349)
T ss_pred CCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcC-CCCEEEEEechhhhCCCCCCCCCcc-CCCCCCCCcc
Confidence 5999999985432 122345678899999999999998764 2236777765320000 00011 0112334468
Q ss_pred EeehhhHHHHHHHHHHHc-------CCCCCCeeeeEEEcCC
Q 020875 155 CLTRLDHNRALGQISEKL-------NVQVSDVKNVIIWGNH 188 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l-------~v~~~~v~~~~v~G~h 188 (320)
+.++....++...+++.+ +++...++...|+|..
T Consensus 153 ~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~ 193 (349)
T TIGR02622 153 SSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGG 193 (349)
T ss_pred hhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence 888888878777777765 7777788877888864
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=100.46 Aligned_cols=174 Identities=13% Similarity=0.078 Sum_probs=108.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc------CCCCcceEEeCC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA------FPLLKGVVATTD 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~------~~~~~~v~~~~~ 74 (320)
|+.+.++|+||||+||+|++++..|++.|+ +|++..++.. ... ....+.... .....++.....
T Consensus 1 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 70 (322)
T PLN02986 1 MNGGGKLVCVTGASGYIASWIVKLLLLRGY-------TVKATVRDLT--DRK-KTEHLLALDGAKERLKLFKADLLEESS 70 (322)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCCc--chH-HHHHHHhccCCCCceEEEecCCCCcch
Confidence 666678999999999999999999999887 7776555432 111 111111100 011234444445
Q ss_pred hhhhcCCCcEEEEeCCCCCCC-CCCHHHHHHhhHHHHHHHHHHHhhhcCCCe-EEEEEcCcchhhHHH---------HHH
Q 020875 75 AVEACTGVNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEQHAAPNC-KVLVVANPANTNALI---------LKE 143 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~-~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~-~viv~snP~~~~~~~---------~~~ 143 (320)
+.++++++|+|||+|+..... .....+++..|+..+.++++.+++.. ++ ++|++|+.... .+. +.+
T Consensus 71 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~--~v~rvV~~SS~~~~-~~~~~~~~~~~~~~E 147 (322)
T PLN02986 71 FEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETP--SVKRVILTSSTAAV-LFRQPPIEANDVVDE 147 (322)
T ss_pred HHHHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcC--CccEEEEecchhhe-ecCCccCCCCCCcCc
Confidence 677788999999999863211 12233567889999999999988752 23 45555543211 100 000
Q ss_pred HCCCCC-----CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 144 FAPSIP-----AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 144 ~~~~~~-----~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
.....| +...|+.++....++...+++..+++...++...|+|.
T Consensus 148 ~~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp 196 (322)
T PLN02986 148 TFFSDPSLCRETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGP 196 (322)
T ss_pred ccCCChHHhhccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCC
Confidence 000001 12357788887778777788888988888888888885
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-10 Score=104.43 Aligned_cols=171 Identities=15% Similarity=0.104 Sum_probs=111.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--C-CCCcceEEeCChhhhcCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--F-PLLKGVVATTDAVEACTG 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~al~~ 81 (320)
+++|+||||+||+|++++..|+++|+ +|+.++++.+.. .......+.... . ....++....++.+++++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~-------~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY-------TVKGTVRNPDDP-KNTHLRELEGGKERLILCKADLQDYEALKAAIDG 81 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCchhh-hHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhc
Confidence 46899999999999999999999987 788888753211 111111121110 0 012344444456778899
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH-------HHHHHHCC---CCC--
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-------LILKEFAP---SIP-- 149 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~-------~~~~~~~~---~~~-- 149 (320)
+|+|||+|+... ....+.+..|+..+.++++.+++.+ . .++|++|+-..+-. ..+.+... ..+
T Consensus 82 ~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~-v-~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~ 156 (342)
T PLN02214 82 CDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAK-V-KRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKN 156 (342)
T ss_pred CCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcC-C-CEEEEeccceeeeccCCCCCCcccCcccCCChhhccc
Confidence 999999998542 2456678899999999999999875 2 25666654321110 00111000 001
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
+...|+.++....++...+++..+++...++...|+|.+
T Consensus 157 p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~ 195 (342)
T PLN02214 157 TKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPP 195 (342)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCC
Confidence 122467777877888888888889999999988899965
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=111.41 Aligned_cols=169 Identities=14% Similarity=0.118 Sum_probs=110.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCC-hhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTD-AVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~-~~~al~ 80 (320)
+.|||+||||+||+|++++..|+.. |+ +|+.+|+... .... . +.+.... ...+++.... +.++++
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-------~V~~l~r~~~--~~~~-~--~~~~~~~~~~gDl~d~~~~l~~~l~ 381 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNY-------EVYGLDIGSD--AISR-F--LGHPRFHFVEGDISIHSEWIEYHIK 381 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCc-------EEEEEeCCch--hhhh-h--cCCCceEEEeccccCcHHHHHHHhc
Confidence 4589999999999999999999974 66 8999998641 1110 0 0110000 1123322212 345788
Q ss_pred CCcEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCC---CC--
Q 020875 81 GVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPS---IP-- 149 (320)
Q Consensus 81 ~aDvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~---~~-- 149 (320)
++|+|||+|+.... ......+.+..|+....++++++++++ .++|++|+.. +... .+.+..+- .|
T Consensus 382 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~---~~~V~~SS~~-vyg~~~~~~~~E~~~~~~~~p~~ 457 (660)
T PRK08125 382 KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN---KRIIFPSTSE-VYGMCTDKYFDEDTSNLIVGPIN 457 (660)
T ss_pred CCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC---CeEEEEcchh-hcCCCCCCCcCccccccccCCCC
Confidence 99999999986432 223456678899999999999999874 3566666531 1100 00110000 01
Q ss_pred -CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 150 -AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 150 -~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
+...|+.++....++...+++..+++...+|..+++|.+
T Consensus 458 ~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 458 KQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR 497 (660)
T ss_pred CCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence 123689999888888888899999999999999889964
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.1e-10 Score=104.05 Aligned_cols=167 Identities=10% Similarity=0.063 Sum_probs=105.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCC-CCcceE-EeCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP-LLKGVV-ATTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~-~~~~v~-~~~~~~~al~ 80 (320)
||||+||||+||+|++++..|+.. ++ +|+.+|+.. .+.. ++... ... ...++. ....+.++++
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~-------~V~~~~r~~--~~~~----~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 67 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW-------EVYGMDMQT--DRLG----DLVNHPRMHFFEGDITINKEWIEYHVK 67 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC-------eEEEEeCcH--HHHH----HhccCCCeEEEeCCCCCCHHHHHHHHc
Confidence 469999999999999999999875 55 899998752 1111 11110 000 112332 1123445678
Q ss_pred CCcEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCC------
Q 020875 81 GVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSI------ 148 (320)
Q Consensus 81 ~aDvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~------ 148 (320)
++|+|||+|+.... ...+.......|+..+.++++.+++.. .++|.+|+.. +... .+.+..+.+
T Consensus 68 ~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~---~~~v~~SS~~-vyg~~~~~~~~ee~~~~~~~~~~ 143 (347)
T PRK11908 68 KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG---KHLVFPSTSE-VYGMCPDEEFDPEASPLVYGPIN 143 (347)
T ss_pred CCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC---CeEEEEecce-eeccCCCcCcCccccccccCcCC
Confidence 99999999876432 223445567889999999999998763 4677666532 1000 000100000
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
++...|+.++.........+++..+++...+|...++|.+
T Consensus 144 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~ 183 (347)
T PRK11908 144 KPRWIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPG 183 (347)
T ss_pred CccchHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCC
Confidence 1222577778777777777788889999999988889964
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=99.90 Aligned_cols=171 Identities=13% Similarity=0.142 Sum_probs=108.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~aD 83 (320)
.++|+||||+|++|++++..|+..|.. .+|+++|++.. .......++..... ....++....++.++++++|
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~-----~~V~~~~r~~~--~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD 76 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNP-----KKIIIYSRDEL--KQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVD 76 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCC-----cEEEEEcCChh--HHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCC
Confidence 468999999999999999999987511 17888887532 11111111211000 11234444445667788999
Q ss_pred EEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhH
Q 020875 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDH 161 (320)
Q Consensus 84 vVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~ 161 (320)
+|||+||....+ ..+..+.+..|+..+.++++.+.+.+ . .++|++|+.. ...+...++.++...
T Consensus 77 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~-~-~~iV~~SS~~------------~~~p~~~Y~~sK~~~ 142 (324)
T TIGR03589 77 YVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNG-V-KRVVALSTDK------------AANPINLYGATKLAS 142 (324)
T ss_pred EEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEEeCCC------------CCCCCCHHHHHHHHH
Confidence 999999864322 23456788999999999999999864 3 3566666421 112233567777666
Q ss_pred HHHHHHHH---HHcCCCCCCeeeeEEEcCCCCccccccc
Q 020875 162 NRALGQIS---EKLNVQVSDVKNVIIWGNHSSSQYPDVN 197 (320)
Q Consensus 162 ~r~~~~~a---~~l~v~~~~v~~~~v~G~hg~~~~~~~S 197 (320)
.++...++ +..|++...++..+|+|..+ +.+|.|.
T Consensus 143 E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~-~~i~~~~ 180 (324)
T TIGR03589 143 DKLFVAANNISGSKGTRFSVVRYGNVVGSRG-SVVPFFK 180 (324)
T ss_pred HHHHHHHHhhccccCcEEEEEeecceeCCCC-CcHHHHH
Confidence 66654433 35678888888888888643 4455544
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=102.68 Aligned_cols=173 Identities=9% Similarity=-0.062 Sum_probs=102.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc---chhHHHHHHHhc---c-cCCCCcceEEeCChhhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMELVD---A-AFPLLKGVVATTDAVEA 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~---~~~~~~~~dl~~---~-~~~~~~~v~~~~~~~~a 78 (320)
+||+||||+||+|++++..|+..|+ +|+++|++... +.+.....+... . ......+++....+.++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~ 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-------EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRI 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-------EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHH
Confidence 4899999999999999999999887 89999886421 111111000000 0 00011233333345566
Q ss_pred cCC--CcEEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHhhhcCCC-eEEEEEcCcchhhHH----HHHHHCCCCC
Q 020875 79 CTG--VNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPN-CKVLVVANPANTNAL----ILKEFAPSIP 149 (320)
Q Consensus 79 l~~--aDvVi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i~~~~~~~-~~viv~snP~~~~~~----~~~~~~~~~~ 149 (320)
+++ +|+|||+|+...... ......+..|+..+.++++.+++++-.. .++|++|.. .+-.. ...+. ....
T Consensus 74 ~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~-~vyg~~~~~~~~E~-~~~~ 151 (343)
T TIGR01472 74 IDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTS-ELYGKVQEIPQNET-TPFY 151 (343)
T ss_pred HHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccH-HhhCCCCCCCCCCC-CCCC
Confidence 664 599999998643211 2234456778889999999998865222 356665542 11100 01111 1223
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
+...|+.++....++...+++.++++....+.+.++|.
T Consensus 152 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp 189 (343)
T TIGR01472 152 PRSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESP 189 (343)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCC
Confidence 44578999998888888888888876544443444454
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-09 Score=99.46 Aligned_cols=176 Identities=14% Similarity=0.092 Sum_probs=107.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C-CCCcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~al~~ 81 (320)
..|||+||||+||||++++..|++.|+ +|++++++. ++......++.... . ....++.......+++++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-------TVHATLRDP--AKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKG 79 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcC
Confidence 458999999999999999999999886 788877653 22221111221100 0 011233333345667788
Q ss_pred CcEEEEeCCCCCCC----CCCHHH-----HHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH--------HHHHHH
Q 020875 82 VNIAVMVGGFPRKE----GMERKD-----VMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA--------LILKEF 144 (320)
Q Consensus 82 aDvVi~~ag~~~~~----~~~r~~-----~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~--------~~~~~~ 144 (320)
+|+|||+|+..... ..+..+ .+..|+..+.++++.++++. .-.++|++|+..-... ..+.+.
T Consensus 80 ~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~-~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~ 158 (353)
T PLN02896 80 CDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK-TVKRVVFTSSISTLTAKDSNGRWRAVVDET 158 (353)
T ss_pred CCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC-CccEEEEEechhhccccccCCCCCCccCcc
Confidence 99999999864321 112222 33445688999999988763 2235666665221100 000110
Q ss_pred CC--------CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 145 AP--------SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 145 ~~--------~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.. ..++...|+.+++...++...+++..+++...+|...|+|.+-
T Consensus 159 ~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~ 211 (353)
T PLN02896 159 CQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFL 211 (353)
T ss_pred cCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCc
Confidence 00 0012226888999888988889999999999999888899653
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-09 Score=100.98 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=96.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~aD 83 (320)
|||+||||+||+|++++..|+.+| +|+.+|+.. .. ...|+.|.. .+.++++ ++|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--------~V~~~~~~~--~~---~~~Dl~d~~-----------~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--------NLIALDVHS--TD---YCGDFSNPE-----------GVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--------CEEEecccc--cc---ccCCCCCHH-----------HHHHHHHhcCCC
Confidence 589999999999999999998776 366677642 11 123444432 4556666 589
Q ss_pred EEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh----HHHHHHHCCCCCCCcEEEee
Q 020875 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLT 157 (320)
Q Consensus 84 vVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~----~~~~~~~~~~~~~~~i~~~t 157 (320)
+|||+|+..... ...+......|+..+.++++.+++.+ .++|.+|... +. ..-..+ ..-..|...|+.+
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g---~~~v~~Ss~~-Vy~~~~~~p~~E-~~~~~P~~~Yg~s 131 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG---AWVVHYSTDY-VFPGTGDIPWQE-TDATAPLNVYGET 131 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEccce-EECCCCCCCcCC-CCCCCCCCHHHHH
Confidence 999999865321 12344456789999999999999875 4666666421 10 000011 0111233457777
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccc
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPD 195 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~ 195 (320)
++...++.... ..+..-+|...|+|..+.+.++.
T Consensus 132 K~~~E~~~~~~----~~~~~ilR~~~vyGp~~~~~~~~ 165 (299)
T PRK09987 132 KLAGEKALQEH----CAKHLIFRTSWVYAGKGNNFAKT 165 (299)
T ss_pred HHHHHHHHHHh----CCCEEEEecceecCCCCCCHHHH
Confidence 77665554332 33445667777888655554443
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.3e-09 Score=94.72 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=100.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchh-HHHHHHHhcccCCCCcceEEeCC-hhhhc-----C
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL-NGVKMELVDAAFPLLKGVVATTD-AVEAC-----T 80 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~-~~~~~dl~~~~~~~~~~v~~~~~-~~~al-----~ 80 (320)
|+||||+||+|++++..|+..|+. .+.++|........ .-...|+.|.. ...+ ..+++ .
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~------~v~~~~~~~~~~~~~~~~~~~~~d~~--------~~~~~~~~~~~~~~~~ 67 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGIT------DILVVDNLKDGTKFVNLVDLDIADYM--------DKEDFLAQIMAGDDFG 67 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCc------eEEEecCCCcchHHHhhhhhhhhhhh--------hHHHHHHHHhcccccC
Confidence 789999999999999999998861 46677764311110 10112322211 0011 12222 3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEe
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL 156 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~ 156 (320)
++|+|||+|+.+.....+....+..|+..+.++++.+++.+ +++|..|+.. +... ...+ .....+...|+.
T Consensus 68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~---~~~i~~SS~~-vyg~~~~~~~~E-~~~~~p~~~Y~~ 142 (308)
T PRK11150 68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE---IPFLYASSAA-TYGGRTDDFIEE-REYEKPLNVYGY 142 (308)
T ss_pred CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcC---CcEEEEcchH-HhCcCCCCCCcc-CCCCCCCCHHHH
Confidence 69999999986543333445678899999999999998864 4566655431 1100 0011 011122335787
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
++....++...+++..+++...+|...|+|.+.
T Consensus 143 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~ 175 (308)
T PRK11150 143 SKFLFDEYVRQILPEANSQICGFRYFNVYGPRE 175 (308)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCC
Confidence 877777776677777788888889888899653
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-09 Score=98.83 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=109.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCC-CCcceEEeCChhhhcCC-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP-LLKGVVATTDAVEACTG- 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~-~~~~v~~~~~~~~al~~- 81 (320)
|+||+||||+||||++++..|+.+|+. .++++|+.+........ ..+... ... ...++....++.+++++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~------~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 73 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSD------AVVVVDKLTYAGNLMSL-APVAQSERFAFEKVDICDRAELARVFTEH 73 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCC------EEEEEecCccccchhhh-hhcccCCceEEEECCCcChHHHHHHHhhc
Confidence 359999999999999999999998861 46677764211111100 011000 000 11233333345566664
Q ss_pred -CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhc------CCC-eEEEEEcCcchhhHH------HHHHHC
Q 020875 82 -VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHA------APN-CKVLVVANPANTNAL------ILKEFA 145 (320)
Q Consensus 82 -aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~------~~~-~~viv~snP~~~~~~------~~~~~~ 145 (320)
+|+|||+||..... .....+....|+..+.++++.+.++. .+. .++|.+|... +... .+.+.
T Consensus 74 ~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~E~- 151 (355)
T PRK10217 74 QPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDE-VYGDLHSTDDFFTET- 151 (355)
T ss_pred CCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchh-hcCCCCCCCCCcCCC-
Confidence 89999999865321 12345678899999999999998741 012 3566666432 1000 01110
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
....+...|+.++....++...+++.++++..-++...|+|.+.
T Consensus 152 ~~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~ 195 (355)
T PRK10217 152 TPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH 195 (355)
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence 11223346888999888888888999999988899888899653
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-09 Score=96.94 Aligned_cols=172 Identities=13% Similarity=0.024 Sum_probs=111.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
..++||+||||+|||||||+..|+..|+ +|...|..-+ +....+++.......++....-....+.++
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh-------~VIa~Dn~ft-----g~k~n~~~~~~~~~fel~~hdv~~pl~~ev 92 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGH-------EVIALDNYFT-----GRKENLEHWIGHPNFELIRHDVVEPLLKEV 92 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCC-------eEEEEecccc-----cchhhcchhccCcceeEEEeechhHHHHHh
Confidence 3568999999999999999999999987 8999997532 222233333222222333333445678999
Q ss_pred cEEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc---hhh----HHHHHHHCCCCCCCcE
Q 020875 83 NIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA---NTN----ALILKEFAPSIPAKNI 153 (320)
Q Consensus 83 DvVi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~---~~~----~~~~~~~~~~~~~~~i 153 (320)
|.|+|+|.....++ .+..+.+..|.-.+.+....+++.+ ++++.+|... |.. ....|-..-.+.++--
T Consensus 93 D~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~---aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~c 169 (350)
T KOG1429|consen 93 DQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSC 169 (350)
T ss_pred hhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC---ceEEEeecccccCCcccCCCccccccccCcCCchhh
Confidence 99999987644333 3455566778888888888888875 6788777542 100 0000000001122223
Q ss_pred EEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 154 ~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
+...+.-+.+|.+.+.+..|+...-.|.++.+|..+
T Consensus 170 ydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm 205 (350)
T KOG1429|consen 170 YDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRM 205 (350)
T ss_pred hhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCcc
Confidence 555566677888899999998877777778788644
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=99.31 Aligned_cols=174 Identities=11% Similarity=0.074 Sum_probs=107.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CC-CCcceEEeCChhhhcC--C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP-LLKGVVATTDAVEACT--G 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~-~~~~v~~~~~~~~al~--~ 81 (320)
|||+||||+||+|++++..|+..|.. .++.+|+........ ....+.... .. ...++....++.++++ +
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~------~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 73 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD------SVVNVDKLTYAGNLE-SLADVSDSERYVFEHADICDRAELDRIFAQHQ 73 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC------eEEEecCCCccchHH-HHHhcccCCceEEEEecCCCHHHHHHHHHhcC
Confidence 58999999999999999999988752 466666532101111 011111100 00 1123333334455665 4
Q ss_pred CcEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhc------CCC-eEEEEEcCcchhhHH-------------
Q 020875 82 VNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHA------APN-CKVLVVANPANTNAL------------- 139 (320)
Q Consensus 82 aDvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~------~~~-~~viv~snP~~~~~~------------- 139 (320)
+|+|||+|+.... ......+++..|+..+.++++.++++. ... .++|.+|... +...
T Consensus 74 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~ 152 (352)
T PRK10084 74 PDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEEL 152 (352)
T ss_pred CCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccC
Confidence 8999999986432 122346688999999999999998751 012 2566665432 1110
Q ss_pred -HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 140 -ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 140 -~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
.+.+. ..+.+...|+.++....++...+++.++++...++...|+|.+
T Consensus 153 ~~~~E~-~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~ 201 (352)
T PRK10084 153 PLFTET-TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY 201 (352)
T ss_pred CCcccc-CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence 01110 1123345789999988888888888999988888888888975
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.7e-09 Score=99.24 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=114.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-----CCCCcceEEeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-----FPLLKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-----~~~~~~v~~~~~~~~al 79 (320)
.++|.||||+|++|+.++..++..+. .+++++|++|. ++.....++.+.. .+...++.....+..++
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p------~~i~l~~~~E~--~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~ 321 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNP------KEIILFSRDEY--KLYLIDMELREKFPELKLRFYIGDVRDRDRVERAM 321 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCC------CEEEEecCchH--HHHHHHHHHHhhCCCcceEEEecccccHHHHHHHH
Confidence 46899999999999999999998765 38999999863 3444445555421 12346787777788999
Q ss_pred CC--CcEEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc-----CcchhhHHHHHHHCCCCCC
Q 020875 80 TG--VNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-----NPANTNALILKEFAPSIPA 150 (320)
Q Consensus 80 ~~--aDvVi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s-----nP~~~~~~~~~~~~~~~~~ 150 (320)
++ .|+|+|+|.....|- ....+-...|+-+++++++++.+++ -. .++.+| ||.+
T Consensus 322 ~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~-V~-~~V~iSTDKAV~PtN--------------- 384 (588)
T COG1086 322 EGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNG-VK-KFVLISTDKAVNPTN--------------- 384 (588)
T ss_pred hcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhC-CC-EEEEEecCcccCCch---------------
Confidence 99 999999998766554 3467788999999999999999987 33 344444 4443
Q ss_pred CcEEEeehhhHHHHHHHHHHHcC---CCCCCeeeeEEEcCCCCcccccccc
Q 020875 151 KNITCLTRLDHNRALGQISEKLN---VQVSDVKNVIIWGNHSSSQYPDVNH 198 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~---v~~~~v~~~~v~G~hg~~~~~~~S~ 198 (320)
+.|.|+.-+..+-...++..+ .....||.=+|+|.. .|.+|+|.+
T Consensus 385 --vmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-GSViPlFk~ 432 (588)
T COG1086 385 --VMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-GSVIPLFKK 432 (588)
T ss_pred --HhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-CCCHHHHHH
Confidence 445554444444444444322 333445655677765 467888843
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-09 Score=106.71 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=107.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cC-CCCcceEEeCChhhhc--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF-PLLKGVVATTDAVEAC-- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~al-- 79 (320)
+++||+||||+||||++++..|++++.- .+|+.+|+....+.+.... ..... .. ....++.........+
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~-----~~V~~~d~~~~~~~~~~l~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 78 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPD-----YKIVVLDKLDYCSNLKNLN-PSKSSPNFKFVKGDIASADLVNYLLIT 78 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCC-----CEEEEEeCCCccchhhhhh-hcccCCCeEEEECCCCChHHHHHHHhh
Confidence 5789999999999999999999987421 2788888642111111000 00000 00 0011222111222223
Q ss_pred CCCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH-------HHHHCCCCCC
Q 020875 80 TGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI-------LKEFAPSIPA 150 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~-------~~~~~~~~~~ 150 (320)
.++|+|||+|+..... .....++...|+..+.++++.+++.+ .-.++|.+|+. .+.... ..+ .....+
T Consensus 79 ~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~vkr~I~~SS~-~vyg~~~~~~~~~~~E-~~~~~p 155 (668)
T PLN02260 79 EGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTG-QIRRFIHVSTD-EVYGETDEDADVGNHE-ASQLLP 155 (668)
T ss_pred cCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEcch-HHhCCCccccccCccc-cCCCCC
Confidence 6899999999875421 12345677899999999999999875 22356666642 111000 000 011113
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
...++.++....++...+++..+++..-+|...|+|.+.
T Consensus 156 ~~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~ 194 (668)
T PLN02260 156 TNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ 194 (668)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence 346788888888888778888899888889888899654
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.4e-09 Score=95.19 Aligned_cols=175 Identities=13% Similarity=0.051 Sum_probs=106.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--C-CCCcceEEeCChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--F-PLLKGVVATTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~al~ 80 (320)
+.++|+||||+|++|++++..|+++|+ +|++++++.+.........++.... . ....+++...++.+++.
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~-------~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~ 77 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGY-------TVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALK 77 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHc
Confidence 456899999999999999999999997 7888776422122211111221000 0 01123433445678899
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH--------HHHHHCCCC-C--
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL--------ILKEFAPSI-P-- 149 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~--------~~~~~~~~~-~-- 149 (320)
++|.|++.++.+........+++..|+..+.++++.+.+.... .++|++|+-...... .+-+ ..+ +
T Consensus 78 ~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v-~riV~~SS~~a~~~~~~~~~~~~~~~E--~~~~~~~ 154 (297)
T PLN02583 78 GCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTI-EKVVFTSSLTAVIWRDDNISTQKDVDE--RSWSDQN 154 (297)
T ss_pred CCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEecchHheecccccCCCCCCCCc--ccCCCHH
Confidence 9999999876543221224567899999999999999876311 356665543211100 0000 000 0
Q ss_pred ----CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 150 ----AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 150 ----~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
+...|+.++....++...+++..+++...++-..|+|..
T Consensus 155 ~~~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~ 197 (297)
T PLN02583 155 FCRKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPS 197 (297)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCC
Confidence 001366677777777767777778888888877788854
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.2e-08 Score=90.66 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=82.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--------------CcceEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--------------LKGVVA 71 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v~~ 71 (320)
|||+|+| +|+||...+-.|++.|| +|+++|+++ ++.+ .|.+...|. .+++..
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-------eVv~vDid~--~KV~----~ln~g~~PI~EpgLe~ll~~~~~~gRl~f 66 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-------EVVCVDIDE--SKVE----LLNKGISPIYEPGLEELLKENLASGRLRF 66 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-------eEEEEeCCH--HHHH----HHhCCCCCCcCccHHHHHHhccccCcEEE
Confidence 7999999 79999999999999998 999999975 3332 233333321 235899
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEE-cCcchhhHHH
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPANTNALI 140 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~-snP~~~~~~~ 140 (320)
+++..++++++|++|++.|.|.++..+ .+...+...++.+.++.+....+|+- |=|++....+
T Consensus 67 Ttd~~~a~~~adv~fIavgTP~~~dg~------aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v 130 (414)
T COG1004 67 TTDYEEAVKDADVVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEV 130 (414)
T ss_pred EcCHHHHHhcCCEEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHH
Confidence 999999999999999999998865432 23466677777777776222444443 3587665444
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=93.09 Aligned_cols=140 Identities=13% Similarity=0.050 Sum_probs=86.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.|||+||||+||+|++++..|..+|+ +|++...+. ........++. . .++|+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-------~V~~~~~~~--~~~~~v~~~l~------------------~-~~~D~ 60 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-------DFHYGSGRL--ENRASLEADID------------------A-VKPTH 60 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-------EEEEecCcc--CCHHHHHHHHH------------------h-cCCCE
Confidence 48999999999999999999999887 665443221 11111111111 0 26899
Q ss_pred EEEeCCCCCCCC-----CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC-cchh-hH--H-----HHHHHCCCCCC
Q 020875 85 AVMVGGFPRKEG-----MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN-PANT-NA--L-----ILKEFAPSIPA 150 (320)
Q Consensus 85 Vi~~ag~~~~~~-----~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn-P~~~-~~--~-----~~~~~~~~~~~ 150 (320)
|||+|+....+. ..+.+.+..|+..+.++++.+++.+ ++++++|. .+-. .. . .+.+..+..++
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g---v~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~ 137 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERG---LVLTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFT 137 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC---CCEEEEecceEeCCCCCCCcccCCCCCcCCCCCCC
Confidence 999998753221 2456788999999999999999875 33455542 2200 00 0 01111111223
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCC
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQ 175 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~ 175 (320)
...|+.+++...++...+++.+++.
T Consensus 138 ~s~Yg~sK~~~E~~~~~y~~~~~lr 162 (298)
T PLN02778 138 GSFYSKTKAMVEELLKNYENVCTLR 162 (298)
T ss_pred CCchHHHHHHHHHHHHHhhccEEee
Confidence 3478888888888776666655544
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-09 Score=97.48 Aligned_cols=177 Identities=15% Similarity=0.048 Sum_probs=102.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchh-HHHHHHHhcc-c---CCCCcceEEeCCh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL-NGVKMELVDA-A---FPLLKGVVATTDA 75 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~-~~~~~dl~~~-~---~~~~~~v~~~~~~ 75 (320)
|....+||+|+||+|++|++++..|+.+|+ +|+++|+....... .....++... . .....++....++
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l 73 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGY-------KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEAL 73 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHH
Confidence 677778999999999999999999999886 78888864211100 0011111100 0 0011233333334
Q ss_pred hhhcC--CCcEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCC
Q 020875 76 VEACT--GVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPS 147 (320)
Q Consensus 76 ~~al~--~aDvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~ 147 (320)
.++++ ++|+|||+|+.... ......+.+..|+....++++.+++.+ . .++|.+|+ ..+... .+.+ ...
T Consensus 74 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~Ss-~~vyg~~~~~~~~E-~~~ 149 (352)
T PLN02240 74 EKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHG-C-KKLVFSSS-ATVYGQPEEVPCTE-EFP 149 (352)
T ss_pred HHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEEcc-HHHhCCCCCCCCCC-CCC
Confidence 44454 68999999986431 112345678999999999999988764 2 25666664 321100 0001 011
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHH-cCCCCCCeeeeEEEcCC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEK-LNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~-l~v~~~~v~~~~v~G~h 188 (320)
..+...++.++....++...+++. .++....+|.+.++|.|
T Consensus 150 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~ 191 (352)
T PLN02240 150 LSATNPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAH 191 (352)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCC
Confidence 122234666777666665555543 46655556666566654
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=94.62 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=103.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~aDv 84 (320)
|||+|+||+|++|++++..|+++|+ +|++++++.. ... ++.+... ....++....++.++++++|+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~----~~~~~~~~~~~~D~~~~~~l~~~~~~~d~ 67 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-------EVRVLVRPTS--DRR----NLEGLDVEIVEGDLRDPASLRKAVAGCRA 67 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-------EEEEEEecCc--ccc----ccccCCceEEEeeCCCHHHHHHHHhCCCE
Confidence 5899999999999999999999886 8999998642 111 1111100 011223222356677889999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH----HHHHHHCCCCCCC--cEEEeeh
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFAPSIPAK--NITCLTR 158 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~----~~~~~~~~~~~~~--~i~~~t~ 158 (320)
|||+++.......+..+....|+..+.++++.+++.+ . .++|++|+....-. ....+..+..+.. ..++.++
T Consensus 68 vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK 145 (328)
T TIGR03466 68 LFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAG-V-ERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSK 145 (328)
T ss_pred EEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhC-C-CeEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHH
Confidence 9999875432234566778899999999999998764 2 25666664321000 0000000000100 1345566
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
....++...+++..+++..-++...++|.+
T Consensus 146 ~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~ 175 (328)
T TIGR03466 146 FLAEQAALEMAAEKGLPVVIVNPSTPIGPR 175 (328)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCC
Confidence 666677666777778888888877777854
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-08 Score=91.50 Aligned_cols=174 Identities=14% Similarity=0.070 Sum_probs=106.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C-CCCcceEEeCChhhhcCC--C
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEACTG--V 82 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~al~~--a 82 (320)
||+||||+|++|++++..|+..+.- .+|+++|+....... ....++.... . ....++....++.+++++ +
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~-----~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD-----AEVIVLDKLTYAGNL-ENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQP 74 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC-----CEEEEecCCCcchhh-hhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCC
Confidence 5899999999999999999887521 178888863211111 1111121110 0 011233333345666776 8
Q ss_pred cEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc--hhhHH--HHHHHCCCCCCCcEEEe
Q 020875 83 NIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA--NTNAL--ILKEFAPSIPAKNITCL 156 (320)
Q Consensus 83 DvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~--~~~~~--~~~~~~~~~~~~~i~~~ 156 (320)
|+|||+|+.... .......++..|+..+..+++.+.+.. .+.+++.+|... +.... ...+ .....+...++.
T Consensus 75 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~i~~Ss~~v~g~~~~~~~~~e-~~~~~~~~~Y~~ 152 (317)
T TIGR01181 75 DAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYW-HEFRFHHISTDEVYGDLEKGDAFTE-TTPLAPSSPYSA 152 (317)
T ss_pred CEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEeeccceeCCCCCCCCcCC-CCCCCCCCchHH
Confidence 999999986431 112345678899999999999998874 445677666421 00000 0111 111223345788
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
++....++...+++..+++...++...++|..
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~ 184 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY 184 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 88888888777888889988888888788854
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=94.56 Aligned_cols=175 Identities=8% Similarity=-0.037 Sum_probs=100.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc---chhHHHHHHHhccc--C-CCCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMELVDAA--F-PLLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~---~~~~~~~~dl~~~~--~-~~~~~v~~~~~~~~ 77 (320)
+.++|+||||+||+|++++..|+.+|+ +|+++++.+.. ..+.....+..... . ....++....++.+
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 77 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRR 77 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHH
Confidence 457999999999999999999999987 88888875321 11111100000000 0 01123332233445
Q ss_pred hcCC--CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCC---eEEEEEcCcchhhHH---HHHHHCCC
Q 020875 78 ACTG--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPN---CKVLVVANPANTNAL---ILKEFAPS 147 (320)
Q Consensus 78 al~~--aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~---~~viv~snP~~~~~~---~~~~~~~~ 147 (320)
++++ .|+|||+|+..... .......+..|+..+.++++.+.++..+. .++|++|. ..+... ...+ ...
T Consensus 78 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss-~~vyg~~~~~~~E-~~~ 155 (340)
T PLN02653 78 WLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGS-SEMYGSTPPPQSE-TTP 155 (340)
T ss_pred HHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEecc-HHHhCCCCCCCCC-CCC
Confidence 5554 69999999874321 12234456789999999999998876221 24555543 211100 0001 011
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
..+...|+.++.....+...+++.+++.....+.+.++|.
T Consensus 156 ~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp 195 (340)
T PLN02653 156 FHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESP 195 (340)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCC
Confidence 2233468889888888877788888865433333333454
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.7e-09 Score=99.45 Aligned_cols=172 Identities=15% Similarity=0.149 Sum_probs=106.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc--------cC-CCCcceEEeCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--------AF-PLLKGVVATTD 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~--------~~-~~~~~v~~~~~ 74 (320)
++++|+||||+||+|++++..|++.|+ +|+++.++. +.+... .++... .. ....+++...+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~-------~V~~~~r~~--~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~ 121 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGY-------SVRIAVDTQ--EDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPES 121 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHH-HHHhhhccccccCCceEEEEcCCCCHHH
Confidence 357999999999999999999999987 777655542 222111 112100 00 01134443345
Q ss_pred hhhhcCCCcEEEEeCCCCCCCCC--CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----------HHH
Q 020875 75 AVEACTGVNIAVMVGGFPRKEGM--ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----------ILK 142 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~~--~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----------~~~ 142 (320)
+.++++++|.|||+|+.....+. ....+...|+..+.++++.+++.... -++|++|... ...+ .+.
T Consensus 122 l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v-~r~V~~SS~~-~~vyg~~~~~~~~~~i~ 199 (367)
T PLN02686 122 LHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESV-RKCVFTSSLL-ACVWRQNYPHDLPPVID 199 (367)
T ss_pred HHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCc-cEEEEeccHH-HhcccccCCCCCCcccC
Confidence 66778899999999876432221 12345677999999999999875212 2455555431 1100 000
Q ss_pred HHCC----CCC--CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 143 EFAP----SIP--AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 143 ~~~~----~~~--~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
+ .+ ..+ +...|+.+++...++...+++..|++...++...|+|..
T Consensus 200 E-~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~ 250 (367)
T PLN02686 200 E-ESWSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPG 250 (367)
T ss_pred C-CCCCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCC
Confidence 0 00 001 112467788888888777888889988888888889964
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=93.18 Aligned_cols=109 Identities=12% Similarity=0.038 Sum_probs=74.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~aDv 84 (320)
|||+||||+||+|++++..|+++|+ +|+.++++. ++.. .+.+... ....++....++.++++++|+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-------~V~~l~R~~--~~~~----~l~~~~v~~v~~Dl~d~~~l~~al~g~d~ 67 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-------QVRCLVRNL--RKAS----FLKEWGAELVYGDLSLPETLPPSFKGVTA 67 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEEcCh--HHhh----hHhhcCCEEEECCCCCHHHHHHHHCCCCE
Confidence 5899999999999999999999987 898888763 1111 1111111 111234334467888999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
|||+++... .+...+...|.....++++++++.+ -. ++|.+|.
T Consensus 68 Vi~~~~~~~---~~~~~~~~~~~~~~~~l~~aa~~~g-vk-r~I~~Ss 110 (317)
T CHL00194 68 IIDASTSRP---SDLYNAKQIDWDGKLALIEAAKAAK-IK-RFIFFSI 110 (317)
T ss_pred EEECCCCCC---CCccchhhhhHHHHHHHHHHHHHcC-CC-EEEEecc
Confidence 999875322 1223456778899999999999875 32 5666664
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=95.00 Aligned_cols=178 Identities=17% Similarity=0.194 Sum_probs=112.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~~a 82 (320)
++.+++||||+||+|.|++..|.+++.. .+|+++|..........+..++...... ...++.....+..|+.++
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~-----~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~ 77 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELK-----LEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA 77 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccc-----cEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc
Confidence 5679999999999999999999998742 3999999865322222222221011111 124555556788999999
Q ss_pred cEEEEeCCCCC-CCCC-CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh---HHHH-HHHCCCCCCC--cEE
Q 020875 83 NIAVMVGGFPR-KEGM-ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN---ALIL-KEFAPSIPAK--NIT 154 (320)
Q Consensus 83 DvVi~~ag~~~-~~~~-~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~---~~~~-~~~~~~~~~~--~i~ 154 (320)
.|+|+|..+. .... .++.....|++.++++.+++.+.+ +..++.|+...+. .... ......+|.. ..+
T Consensus 78 -~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~---v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y 153 (361)
T KOG1430|consen 78 -VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG---VKRLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPY 153 (361)
T ss_pred -eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhC---CCEEEEecCceEEeCCeecccCCCCCCCcccccccc
Confidence 7777654432 2223 477778999999999999999986 4455555444332 1111 1111234422 268
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCc
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSS 191 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~ 191 (320)
+.|+.+.+++....+..-+....-+|...|+|+ |+.
T Consensus 154 ~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGp-gd~ 189 (361)
T KOG1430|consen 154 GESKALAEKLVLEANGSDDLYTCALRPPGIYGP-GDK 189 (361)
T ss_pred chHHHHHHHHHHHhcCCCCeeEEEEccccccCC-CCc
Confidence 888887777766555444466777888888886 443
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-08 Score=91.50 Aligned_cols=172 Identities=15% Similarity=0.080 Sum_probs=99.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccch-hHHHHHHHhcccCC-CCcceEEeCChhhhcC--C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA-LNGVKMELVDAAFP-LLKGVVATTDAVEACT--G 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~-~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~--~ 81 (320)
|||+||||+|++|++++..|++.|+ +|+++++...... ......++.+.... ...++.......++++ +
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 73 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-------DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHA 73 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-------eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCC
Confidence 6899999999999999999999887 7888886421111 00001111111100 1122222223344454 6
Q ss_pred CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCC-CCCcEE
Q 020875 82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSI-PAKNIT 154 (320)
Q Consensus 82 aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~-~~~~i~ 154 (320)
+|+|||+|+..... .....+.+..|+..+.++++.+++.+ . .++|.+|+ ..+... .+.+. ... .+...+
T Consensus 74 ~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~Ss-~~~yg~~~~~~~~E~-~~~~~p~~~Y 149 (338)
T PRK10675 74 IDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-V-KNLIFSSS-ATVYGDQPKIPYVES-FPTGTPQSPY 149 (338)
T ss_pred CCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEecc-HHhhCCCCCCccccc-cCCCCCCChh
Confidence 89999999864321 12345678899999999999998874 2 35665554 221100 00010 000 122346
Q ss_pred EeehhhHHHHHHHHHHH-cCCCCCCeeeeEEEcCC
Q 020875 155 CLTRLDHNRALGQISEK-LNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~-l~v~~~~v~~~~v~G~h 188 (320)
+.++....++...+++. .+++..-+|...++|.|
T Consensus 150 ~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~ 184 (338)
T PRK10675 150 GKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAH 184 (338)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCC
Confidence 77777777776666654 36666667766677866
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-08 Score=88.06 Aligned_cols=166 Identities=14% Similarity=0.210 Sum_probs=103.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC--cEE
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV--NIA 85 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a--DvV 85 (320)
|+|+||+||+|++++..|+.+|+ +++.+.+....+.......++... ..++.....+.+.+++. |+|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-------~v~~~~~~~~~~~~~~~~~~~~~~----~~dl~~~~~~~~~~~~~~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-------EVIVLSRSSNSESFEEKKLNVEFV----IGDLTDKEQLEKLLEKANIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-------EEEEEESCSTGGHHHHHHTTEEEE----ESETTSHHHHHHHHHHHTESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-------ccccccccccccccccccceEEEE----EeeccccccccccccccCceEE
Confidence 78999999999999999999997 655555543222111000000000 01111112455666666 999
Q ss_pred EEeCCCCC--CCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH----HHHHCCCCCCCcEEEeehh
Q 020875 86 VMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPAKNITCLTRL 159 (320)
Q Consensus 86 i~~ag~~~--~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~----~~~~~~~~~~~~i~~~t~l 159 (320)
|++|+... ....+..++...|+...+++++.+++.+ . .++|++|+ ..+-... +.+ .....+...++.++.
T Consensus 70 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~i~~sS-~~~y~~~~~~~~~e-~~~~~~~~~Y~~~K~ 145 (236)
T PF01370_consen 70 IHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAG-V-KRFIFLSS-ASVYGDPDGEPIDE-DSPINPLSPYGASKR 145 (236)
T ss_dssp EEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-T-SEEEEEEE-GGGGTSSSSSSBET-TSGCCHSSHHHHHHH
T ss_pred EEeecccccccccccccccccccccccccccccccccc-c-cccccccc-cccccccccccccc-ccccccccccccccc
Confidence 99998652 1113456788899999999999999986 3 46676665 3211000 000 000111123667777
Q ss_pred hHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 160 DHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 160 d~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
...++...++++.+++...+|...|+|.+
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 146 AAEELLRDYAKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEESEEESTT
T ss_pred ccccccccccccccccccccccccccccc
Confidence 77788788888889999999999999976
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=80.72 Aligned_cols=113 Identities=21% Similarity=0.308 Sum_probs=69.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--------------CcceEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--------------LKGVVA 71 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v~~ 71 (320)
|||+|+| .|+||..+|..|++.|+ +|+.+|+++ ++.+ .+.....+. ..+++.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-------~V~g~D~~~--~~v~----~l~~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-------QVIGVDIDE--EKVE----ALNNGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-------EEEEE-S-H--HHHH----HHHTTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-------EEEEEeCCh--HHHH----HHhhccccccccchhhhhccccccccchh
Confidence 7999999 79999999999999998 899999974 3332 233332221 257889
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc-CcchhhH
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPANTNA 138 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s-nP~~~~~ 138 (320)
+++..++++++|++|++.+.|...+.+ .+...+...++.+.++..++..+|+=| =|.+..-
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred hhhhhhhhhccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 999999999999999999988755332 123344555666666553444444444 3665543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-07 Score=84.56 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=97.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al~ 80 (320)
++++++||||+|++|++++..|+++|. +|+++|++. +.+.....++...... ...++....+..++++
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-------KLVLADVQQ--DALDRAVAELRAQGAEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 346899999999999999999999887 899999863 3333333333221100 1123322223333333
Q ss_pred -------CCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHH----HhhhcCC----CeEEEEEcCcchhhHH
Q 020875 81 -------GVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASA----LEQHAAP----NCKVLVVANPANTNAL 139 (320)
Q Consensus 81 -------~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~----i~~~~~~----~~~viv~snP~~~~~~ 139 (320)
..|+|||.||..... ..+ ....+..|+.....+++. +.+.+.+ ...+|++|+....
T Consensus 76 ~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~--- 152 (287)
T PRK06194 76 AALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL--- 152 (287)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---
Confidence 479999999875421 112 223467777766665555 4444311 1456666653211
Q ss_pred HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
.+.+..-.|+.++.-...+...+++.++.....++...
T Consensus 153 ------~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~ 190 (287)
T PRK06194 153 ------LAPPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASV 190 (287)
T ss_pred ------cCCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 12233336788887777788888888887777787544
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-07 Score=79.44 Aligned_cols=103 Identities=21% Similarity=0.326 Sum_probs=68.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH---HHHH-Hh---cccC-------CCCcceEEe
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG---VKME-LV---DAAF-------PLLKGVVAT 72 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~---~~~d-l~---~~~~-------~~~~~v~~~ 72 (320)
||+|+| +|.+|..++..++..|+ +|+|+|.+++ .++. ...+ +. +... .....++.+
T Consensus 1 ~V~ViG-aG~mG~~iA~~~a~~G~-------~V~l~d~~~~--~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIG-AGTMGRGIAALFARAGY-------EVTLYDRSPE--ALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS-------EEEEE-SSHH--HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEc-CCHHHHHHHHHHHhCCC-------cEEEEECChH--HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 799999 59999999999999997 9999999752 2221 1111 11 1110 013578888
Q ss_pred CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 73 TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 73 ~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
+++.++. +||+||-+. .++.+.-+++...+++.++|++ |++||...+
T Consensus 71 ~dl~~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~--ilasnTSsl 117 (180)
T PF02737_consen 71 TDLEEAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDT--ILASNTSSL 117 (180)
T ss_dssp SSGGGGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTS--EEEE--SSS
T ss_pred cCHHHHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCc--eEEecCCCC
Confidence 8876655 999999875 1235667899999999987776 577776543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3e-07 Score=82.37 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=116.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CC-CCcceEEeCChhhhcC--C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP-LLKGVVATTDAVEACT--G 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~-~~~~v~~~~~~~~al~--~ 81 (320)
|+++||||+||||++++..++.+..- .+|+.+|.-.-....+ ...++.+.. .. ...++.......+.++ +
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-----~~v~~~DkLTYAgn~~-~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~ 74 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-----DHVVNLDKLTYAGNLE-NLADVEDSPRYRFVQGDICDRELVDRLFKEYQ 74 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCC-----ceEEEEecccccCCHH-HHHhhhcCCCceEEeccccCHHHHHHHHHhcC
Confidence 68999999999999999998876541 2688888632111111 112343321 11 1245544445566676 6
Q ss_pred CcEEEEeCCCCC--CCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC-cc--hhhH--HHHHHHCCCCCCCcEE
Q 020875 82 VNIAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN-PA--NTNA--LILKEFAPSIPAKNIT 154 (320)
Q Consensus 82 aDvVi~~ag~~~--~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn-P~--~~~~--~~~~~~~~~~~~~~i~ 154 (320)
.|+|+|.|.-.. ++-.....++..|+-++..++++++++. ..-+++-+|. -+ ++.. ..+.+ .+.+.|+..+
T Consensus 75 ~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~-~~frf~HISTDEVYG~l~~~~~~FtE-~tp~~PsSPY 152 (340)
T COG1088 75 PDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYW-GKFRFHHISTDEVYGDLGLDDDAFTE-TTPYNPSSPY 152 (340)
T ss_pred CCeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhc-ccceEEEeccccccccccCCCCCccc-CCCCCCCCCc
Confidence 999999886432 2223467899999999999999999996 4346777763 12 1110 12233 3567777888
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeeeeEEEc
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G 186 (320)
..|+-.+--|.+...+.+|++..-.++.+-+|
T Consensus 153 SASKAasD~lVray~~TYglp~~ItrcSNNYG 184 (340)
T COG1088 153 SASKAASDLLVRAYVRTYGLPATITRCSNNYG 184 (340)
T ss_pred chhhhhHHHHHHHHHHHcCCceEEecCCCCcC
Confidence 88888888889999999999987777776666
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-07 Score=81.79 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=90.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC----CCCcceEEeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF----PLLKGVVATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~----~~~~~v~~~~~~~~al 79 (320)
+.++|+|+||+|++|++++..|++.|+ +|++++++. .+.+.....++.+... ....+++...+..+++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-------~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 76 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-------RVAIHYHRS-AAEADALAAELNALRPGSAAALQADLLDPDALPELV 76 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCC-HHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHH
Confidence 447899999999999999999999887 888888753 1223322223332110 0112222222233333
Q ss_pred -------CCCcEEEEeCCCCCCC------CCCHHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcchhhHHHHHHHC
Q 020875 80 -------TGVNIAVMVGGFPRKE------GMERKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~~~------~~~r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~~~~~~~~~~~ 145 (320)
...|+|||++|..... ..+..+.+..|+.....+.+.+.++-. ....++..++ . .. .
T Consensus 77 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~-~-------~~-~ 147 (249)
T PRK09135 77 AACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD-I-------HA-E 147 (249)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC-h-------hh-c
Confidence 3579999999863211 112345677898888888888765421 1234444432 1 11 1
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
...++...|+.++.....+...+++.++
T Consensus 148 ~~~~~~~~Y~~sK~~~~~~~~~l~~~~~ 175 (249)
T PRK09135 148 RPLKGYPVYCAAKAALEMLTRSLALELA 175 (249)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHC
Confidence 2334444678887777777777777764
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-07 Score=95.48 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=73.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+||||+||+|++++..|+.+|+ +|++++++.. +... ........++....++.++++++|+|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-------~Vv~l~R~~~-~~~~-------~~v~~v~gDL~D~~~l~~al~~vD~V 65 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-------EVVGIARHRP-DSWP-------SSADFIAADIRDATAVESAMTGADVV 65 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCch-hhcc-------cCceEEEeeCCCHHHHHHHHhCCCEE
Confidence 5899999999999999999999887 8999987531 1110 00000112232223566778899999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
||+|+.... ....|+..+.++++.+++.+ . .++|++|++.
T Consensus 66 VHlAa~~~~-------~~~vNv~GT~nLLeAa~~~g-v-kr~V~iSS~~ 105 (854)
T PRK05865 66 AHCAWVRGR-------NDHINIDGTANVLKAMAETG-T-GRIVFTSSGH 105 (854)
T ss_pred EECCCcccc-------hHHHHHHHHHHHHHHHHHcC-C-CeEEEECCcH
Confidence 999975421 35789999999999998875 2 3677777764
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-07 Score=86.28 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=95.3
Q ss_pred EEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CCcEEE
Q 020875 9 LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVNIAV 86 (320)
Q Consensus 9 ~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~aDvVi 86 (320)
+||||+||||++++..|+..|+ ++++..... ..|+.+.. ++.+.++ ++|+||
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~-------~v~~~~~~~--------~~Dl~~~~-----------~l~~~~~~~~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF-------TNLVLRTHK--------ELDLTRQA-----------DVEAFFAKEKPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC-------cEEEeeccc--------cCCCCCHH-----------HHHHHHhccCCCEEE
Confidence 4899999999999999998876 444443221 13444432 3444444 579999
Q ss_pred EeCCCCCC---CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH----HHHHHHC----CCCCCCcEEE
Q 020875 87 MVGGFPRK---EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFA----PSIPAKNITC 155 (320)
Q Consensus 87 ~~ag~~~~---~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~----~~~~~~~----~~~~~~~i~~ 155 (320)
|+|+.... ......++...|+....++++.+++.+ . .++|++|+.. +-. .-+.+.. +.-|....++
T Consensus 55 h~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~i~~SS~~-vyg~~~~~~~~E~~~~~~~~~p~~~~Y~ 131 (306)
T PLN02725 55 LAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHG-V-KKLLFLGSSC-IYPKFAPQPIPETALLTGPPEPTNEWYA 131 (306)
T ss_pred EeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcC-C-CeEEEeCcee-ecCCCCCCCCCHHHhccCCCCCCcchHH
Confidence 99976421 122345678899999999999999875 2 2566665421 100 0000100 0011112467
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
.++....++...+.+..+++...++...|+|.+
T Consensus 132 ~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~ 164 (306)
T PLN02725 132 IAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPH 164 (306)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence 777766666666777889998888888889975
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=84.47 Aligned_cols=147 Identities=16% Similarity=0.240 Sum_probs=92.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC--cE
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV--NI 84 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a--Dv 84 (320)
||+|+||+|++|++++..|++.|+ +|+++++. ..|+.+.. ++.++++++ |+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-------~v~~~~r~---------~~d~~~~~-----------~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-------VVVALTSS---------QLDLTDPE-----------ALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-------EEEEeCCc---------ccCCCCHH-----------HHHHHHHhCCCCE
Confidence 689999999999999999999887 88888864 13444332 455666665 99
Q ss_pred EEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEeeh
Q 020875 85 AVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTR 158 (320)
Q Consensus 85 Vi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~t~ 158 (320)
|||+++...... ......+..|+..+.++++.+++.+ .++|++|... +... .+.+. ....+...++.++
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~v~~Ss~~-vy~~~~~~~~~E~-~~~~~~~~Y~~~K 128 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHG---ARLVHISTDY-VFDGEGKRPYRED-DATNPLNVYGQSK 128 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEeeee-eecCCCCCCCCCC-CCCCCcchhhHHH
Confidence 999998643221 2345677899999999999998764 3566666421 1000 00010 0011122345444
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
....+ +.+.++.+..-+|...|+|.+.
T Consensus 129 ~~~E~----~~~~~~~~~~ilR~~~v~G~~~ 155 (287)
T TIGR01214 129 LAGEQ----AIRAAGPNALIVRTSWLYGGGG 155 (287)
T ss_pred HHHHH----HHHHhCCCeEEEEeeecccCCC
Confidence 44333 2334466777778777788764
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.4e-07 Score=81.85 Aligned_cols=159 Identities=14% Similarity=0.204 Sum_probs=102.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~aD 83 (320)
|||+|+|++|++|+.|...|. .+. +|.-.++.+ +|+.+.. ...+.++ .-|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~-------~v~a~~~~~---------~Ditd~~-----------~v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF-------EVIATDRAE---------LDITDPD-----------AVLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc-------eEEeccCcc---------ccccChH-----------HHHHHHHhhCCC
Confidence 569999999999999998887 333 787777642 5666654 4555565 459
Q ss_pred EEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC-cc--hhhHHHHHHHCCCCCCCcEEEeeh
Q 020875 84 IAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN-PA--NTNALILKEFAPSIPAKNITCLTR 158 (320)
Q Consensus 84 vVi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn-P~--~~~~~~~~~~~~~~~~~~i~~~t~ 158 (320)
+||++|.+..... .+++.-+..|+....++++.+++.+ +++|.+|. -+ +.-..-..+ .---.|..+||-|+
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g---a~lVhiSTDyVFDG~~~~~Y~E-~D~~~P~nvYG~sK 128 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVG---ARLVHISTDYVFDGEKGGPYKE-TDTPNPLNVYGRSK 128 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhC---CeEEEeecceEecCCCCCCCCC-CCCCCChhhhhHHH
Confidence 9999999875432 3455567899999999999999987 67777763 12 100000000 00112445889988
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccc-ccccccc
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY-PDVNHAT 200 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~-~~~S~~~ 200 (320)
+-...+.... +-+.--+|..-++|++|.+.+ +.++.++
T Consensus 129 l~GE~~v~~~----~~~~~I~Rtswv~g~~g~nFv~tml~la~ 167 (281)
T COG1091 129 LAGEEAVRAA----GPRHLILRTSWVYGEYGNNFVKTMLRLAK 167 (281)
T ss_pred HHHHHHHHHh----CCCEEEEEeeeeecCCCCCHHHHHHHHhh
Confidence 8776654433 333344566667899995533 3444333
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.1e-07 Score=88.96 Aligned_cols=116 Identities=11% Similarity=0.056 Sum_probs=76.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-----c------C-CCCcceEEeC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-----A------F-PLLKGVVATT 73 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-----~------~-~~~~~v~~~~ 73 (320)
+.|+|+||+|++|++++..|+..|+ +|++++++. +++......+... . . ....++....
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~-------~Vval~Rn~--ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGF-------RVRAGVRSA--QRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD 151 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence 5799999999999999999999887 788888864 3333222222110 0 0 0112333233
Q ss_pred ChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 74 DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 74 ~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
++.+++.++|+||+++|.......+....+..|...+.++++.+.+.+ - .++|++|.
T Consensus 152 sI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~ag-V-gRIV~VSS 208 (576)
T PLN03209 152 QIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAK-V-NHFILVTS 208 (576)
T ss_pred HHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhC-C-CEEEEEcc
Confidence 456678999999999986542222233456778899999999998765 2 36676664
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-07 Score=83.61 Aligned_cols=173 Identities=15% Similarity=0.121 Sum_probs=107.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH--HHHHHhcccC---CCCcceEEeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG--VKMELVDAAF---PLLKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~--~~~dl~~~~~---~~~~~v~~~~~~~~al 79 (320)
.++|.||||+||||+|.+..|+++|+ +|+++|.-.+. .+.. ....+.+... ....++.....+.+.+
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy-------~v~~vDNl~n~-~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF 73 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY-------GVVIVDNLNNS-YLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLF 73 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC-------cEEEEeccccc-chhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHH
Confidence 46899999999999999999999998 89999975321 1111 1122222110 0112333333344444
Q ss_pred C--CCcEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh---HH-HHHHHCCCCCCC
Q 020875 80 T--GVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN---AL-ILKEFAPSIPAK 151 (320)
Q Consensus 80 ~--~aDvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~---~~-~~~~~~~~~~~~ 151 (320)
+ .-|.|+|.|+.... +-+.+..+...|+-.+.++++.|++++ +.-++.++++.+- +. -+.+..+..-|.
T Consensus 74 ~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~---~~~~V~sssatvYG~p~~ip~te~~~t~~p~ 150 (343)
T KOG1371|consen 74 SEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN---VKALVFSSSATVYGLPTKVPITEEDPTDQPT 150 (343)
T ss_pred hhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC---CceEEEecceeeecCcceeeccCcCCCCCCC
Confidence 3 46999999876432 224567788899999999999999985 3444555444221 00 011111111133
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
..+|-|..-.+....-+.+.++.....+|.+.++|.|
T Consensus 151 ~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~ 187 (343)
T KOG1371|consen 151 NPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAH 187 (343)
T ss_pred CcchhhhHHHHHHHHhhhccccceEEEEEeccccCcc
Confidence 4677777777777777777777777777877777744
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=80.36 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHH-------Hhcc-cC------CCC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-------LVDA-AF------PLL 66 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~d-------l~~~-~~------~~~ 66 (320)
|.....||+|+| +|.+|..++..++..|+ +|+++|+++ +.++..... +.+. .. ...
T Consensus 1 ~~~~~~~V~ViG-aG~mG~~iA~~~a~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~ 70 (286)
T PRK07819 1 MSDAIQRVGVVG-AGQMGAGIAEVCARAGV-------DVLVFETTE--ELATAGRNRIEKSLERAVSRGKLTERERDAAL 70 (286)
T ss_pred CCCCccEEEEEc-ccHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHHHHHHHHHHHhcccCChhhHHHHH
Confidence 555667999999 59999999999999997 899999975 333211111 1111 00 012
Q ss_pred cceEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCcchh
Q 020875 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANT 136 (320)
Q Consensus 67 ~~v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP~~~ 136 (320)
.+++.++++ +++++||+||-+.- ++.+.-+++...+++.+ +|++ |++||....
T Consensus 71 ~~l~~~~~~-~~~~~~d~ViEav~--------------E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~ 124 (286)
T PRK07819 71 ARLRFTTDL-GDFADRQLVIEAVV--------------EDEAVKTEIFAELDKVVTDPDA--VLASNTSSI 124 (286)
T ss_pred hCeEeeCCH-HHhCCCCEEEEecc--------------cCHHHHHHHHHHHHHhhCCCCc--EEEECCCCC
Confidence 466677776 77999999998751 23345566777888886 5665 456666544
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-07 Score=83.70 Aligned_cols=97 Identities=21% Similarity=0.314 Sum_probs=67.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEEEE
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVM 87 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvVi~ 87 (320)
|+||||+||+|++++..|++.|+ +|+.+++++.. ..... ... ...+.. ....++++++|+|||
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~---~~~----~~~~~~-~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-------EVTILTRSPPA--GANTK---WEG----YKPWAP-LAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-------EEEEEeCCCCC--CCccc---cee----eecccc-cchhhhcCCCCEEEE
Confidence 58999999999999999999886 89999986522 11100 000 001111 244677899999999
Q ss_pred eCCCCCCCC----CCHHHHHHhhHHHHHHHHHHHhhhc
Q 020875 88 VGGFPRKEG----MERKDVMSKNVSIYKAQASALEQHA 121 (320)
Q Consensus 88 ~ag~~~~~~----~~r~~~~~~n~~~~~~i~~~i~~~~ 121 (320)
+|+.+...+ ....++.+.|+..++++++.+++++
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~ 101 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAE 101 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 998754221 1234577889999999999999875
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-06 Score=80.84 Aligned_cols=148 Identities=13% Similarity=0.075 Sum_probs=92.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHH-------HHhccc---CCCCcceEEeCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-------ELVDAA---FPLLKGVVATTD 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~-------dl~~~~---~~~~~~v~~~~~ 74 (320)
..||+|+| +|.+|+.++..++..|+ +|+++|++++ .+..... .+.... ......++..++
T Consensus 7 i~~VaVIG-aG~MG~giA~~~a~aG~-------~V~l~D~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (321)
T PRK07066 7 IKTFAAIG-SGVIGSGWVARALAHGL-------DVVAWDPAPG--AEAALRANVANAWPALERQGLAPGASPARLRFVAT 76 (321)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence 36999999 69999999999999998 8999999742 2211110 111010 011245667778
Q ss_pred hhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC------
Q 020875 75 AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI------ 148 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~------ 148 (320)
+.+++++||+||-++ + +|.+.-+++...+.+.++|++ |+.||.+.....-+++.. ..
T Consensus 77 l~~av~~aDlViEav--p------------E~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~la~~~-~~p~R~~g 139 (321)
T PRK07066 77 IEACVADADFIQESA--P------------EREALKLELHERISRAAKPDA--IIASSTSGLLPTDFYARA-THPERCVV 139 (321)
T ss_pred HHHHhcCCCEEEECC--c------------CCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHHHHhc-CCcccEEE
Confidence 888999999999874 1 223455677788888886665 778887765443333322 21
Q ss_pred -----CCCc-----EEE--eehhhHHHHHHHHHHHcCCCCCCe
Q 020875 149 -----PAKN-----ITC--LTRLDHNRALGQISEKLNVQVSDV 179 (320)
Q Consensus 149 -----~~~~-----i~~--~t~ld~~r~~~~~a~~l~v~~~~v 179 (320)
|++. |+. .|.-++......+.+.+|..|--+
T Consensus 140 ~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v 182 (321)
T PRK07066 140 GHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHV 182 (321)
T ss_pred EecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEec
Confidence 2221 222 355555555556667788766444
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-06 Score=76.67 Aligned_cols=158 Identities=17% Similarity=0.107 Sum_probs=93.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh----
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA---- 78 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a---- 78 (320)
.+.++++|+||+|++|.+++..|+++|. +|++.|++. +.+.....++.........++....+..++
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-------RVVIADIKP--ARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAA 74 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHH
Confidence 3456899999999999999999999987 899999864 333332223321110111122222222222
Q ss_pred ---cCCCcEEEEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 ---CTGVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 ---l~~aDvVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+...|++||++|...... .+..+.+..|+.....+.+.+.++- ..++++|++|+.... .
T Consensus 75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~---------~ 145 (257)
T PRK07067 75 VERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGR---------R 145 (257)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhC---------C
Confidence 346899999998643111 1233457788888877777775431 123567777753211 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+.+..-.|+.++.....+.+.+++.+. +..++
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~ 177 (257)
T PRK07067 146 GEALVSHYCATKAAVISYTQSAALALI--RHGIN 177 (257)
T ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhc--ccCeE
Confidence 233333567777666667777777654 34555
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.5e-07 Score=74.57 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=65.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC------CCCcceEEeCChhhhcC
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF------PLLKGVVATTDAVEACT 80 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~------~~~~~v~~~~~~~~al~ 80 (320)
||+|+| +|..|.+++..|..+|+ +|.|+.+++ +.++.. .-.+... .....+.+++++.++++
T Consensus 1 KI~ViG-aG~~G~AlA~~la~~g~-------~V~l~~~~~--~~~~~i--~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~ 68 (157)
T PF01210_consen 1 KIAVIG-AGNWGTALAALLADNGH-------EVTLWGRDE--EQIEEI--NETRQNPKYLPGIKLPENIKATTDLEEALE 68 (157)
T ss_dssp EEEEES-SSHHHHHHHHHHHHCTE-------EEEEETSCH--HHHHHH--HHHTSETTTSTTSBEETTEEEESSHHHHHT
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCC-------EEEEEeccH--HHHHHH--HHhCCCCCCCCCcccCcccccccCHHHHhC
Confidence 899999 59999999999999997 999999963 222221 1122211 12357888999999999
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
++|+||++. |. ...+++++.++.+-+++..+++++
T Consensus 69 ~ad~Iiiav--Ps--------------~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 69 DADIIIIAV--PS--------------QAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp T-SEEEE-S---G--------------GGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cccEEEecc--cH--------------HHHHHHHHHHhhccCCCCEEEEec
Confidence 999999874 22 234677888888763444444433
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.1e-07 Score=92.00 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=68.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~~aDv 84 (320)
|||+||||+||+|++++..|+.+|+ +|+.+|+.+. .. .+.... ...++... ...+++.++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-------~Vi~ldr~~~--~~-------~~~~ve~v~~Dl~d~-~l~~al~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-------TVSGIAQHPH--DA-------LDPRVDYVCASLRNP-VLQELAGEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEeCChh--hc-------ccCCceEEEccCCCH-HHHHHhcCCCE
Confidence 5899999999999999999999887 8999997531 10 000000 11222222 24566789999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
|||+|+... .. -...|+..+.++++.+++.+ +++|++|
T Consensus 64 VIHLAa~~~--~~----~~~vNv~Gt~nLleAA~~~G---vRiV~~S 101 (699)
T PRK12320 64 VIHLAPVDT--SA----PGGVGITGLAHVANAAARAG---ARLLFVS 101 (699)
T ss_pred EEEcCccCc--cc----hhhHHHHHHHHHHHHHHHcC---CeEEEEE
Confidence 999997532 11 12478999999999998875 4666666
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.2e-07 Score=81.68 Aligned_cols=166 Identities=14% Similarity=0.126 Sum_probs=95.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh----cCCCc
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA----CTGVN 83 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----l~~aD 83 (320)
|+||||+|++|++++..|..+|+. +|.++++......+. .+... ....++......... +.++|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~------~v~~~~~~~~~~~~~----~~~~~--~~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT------DILVVDNLRDGHKFL----NLADL--VIADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc------eEEEEecCCCchhhh----hhhhe--eeeccCcchhHHHHHHhhccCCCC
Confidence 689999999999999999998852 677888653212111 11100 011112211122222 25799
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH---HHHHHCCCCCCCcEEEeehhh
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEFAPSIPAKNITCLTRLD 160 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~---~~~~~~~~~~~~~i~~~t~ld 160 (320)
+|||+|+.......+..+.+..|+..+.++++.+++.+ .++|++|+. .+... ...+..+-..+...++.++..
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~v~~SS~-~vy~~~~~~~~e~~~~~~p~~~Y~~sK~~ 144 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKG---IPFIYASSA-ATYGDGEAGFREGRELERPLNVYGYSKFL 144 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhC---CcEEEEccH-HhcCCCCCCcccccCcCCCCCHHHHHHHH
Confidence 99999986543333455677899999999999998864 356666642 11100 000100001122356666665
Q ss_pred HHHHHHHH-H-HHcCCCCCCeeeeEEEcCCC
Q 020875 161 HNRALGQI-S-EKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 161 ~~r~~~~~-a-~~l~v~~~~v~~~~v~G~hg 189 (320)
...+.... + +..+++...+|...|+|...
T Consensus 145 ~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~ 175 (314)
T TIGR02197 145 FDQYVRRRVLPEALSAQVVGLRYFNVYGPRE 175 (314)
T ss_pred HHHHHHHHhHhhccCCceEEEEEeeccCCCC
Confidence 55543322 2 23456777788888889653
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-07 Score=77.26 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=67.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEEEE
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVM 87 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvVi~ 87 (320)
|+|+||+|++|+.++..|+++++ +|+++-+++ +++.. .........++....++.++++++|+||+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-------~V~~~~R~~--~~~~~-----~~~~~~~~~d~~d~~~~~~al~~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-------EVTALVRSP--SKAED-----SPGVEIIQGDLFDPDSVKAALKGADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-------EEEEEESSG--GGHHH-----CTTEEEEESCTTCHHHHHHHHTTSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCC-------EEEEEecCc--hhccc-----ccccccceeeehhhhhhhhhhhhcchhhh
Confidence 78999999999999999999996 899888864 33321 10000111223223357889999999999
Q ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 88 VGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 88 ~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
++|.+.+ + .+.++.+++.+++.+ . .+++++|.
T Consensus 67 ~~~~~~~------~-----~~~~~~~~~a~~~~~-~-~~~v~~s~ 98 (183)
T PF13460_consen 67 AAGPPPK------D-----VDAAKNIIEAAKKAG-V-KRVVYLSS 98 (183)
T ss_dssp CCHSTTT------H-----HHHHHHHHHHHHHTT-S-SEEEEEEE
T ss_pred hhhhhcc------c-----ccccccccccccccc-c-ccceeeec
Confidence 9875542 1 677889999998875 3 25666553
|
... |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-06 Score=76.07 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=87.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++||||+|++|++++..|++.|. +|+++++++ +.......++.+.... ...++....+..++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-------AVAIADLNQ--DGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCh--HHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999887 789999874 2333223333322110 01122211122222
Q ss_pred ----cCCCcEEEEeCCCCCCC---C---CCHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 79 ----CTGVNIAVMVGGFPRKE---G---MERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~---~---~~r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+...|+|||++|..... . ....+.+..|+.. ++.+.+.+.+.. +..++|++|.-.. .
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss~~~-------~- 148 (262)
T PRK13394 78 VAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGSVHS-------H- 148 (262)
T ss_pred HHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcchhh-------c-
Confidence 23589999999874311 1 1123456677776 666677663333 3356666664211 1
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.+....++.++.....+-+.+++.+. +..++..
T Consensus 149 -~~~~~~~~y~~sk~a~~~~~~~la~~~~--~~~i~v~ 183 (262)
T PRK13394 149 -EASPLKSAYVTAKHGLLGLARVLAKEGA--KHNVRSH 183 (262)
T ss_pred -CCCCCCcccHHHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence 1233333566666555555555666642 3456543
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=76.78 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=87.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--CCCCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FPLLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~~~~~~v~~~~~~~~a 78 (320)
|..+.++++|+||+|++|++++..|+++|+ +|+++++++ +++.....++.+.. .....++....+...+
T Consensus 1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (251)
T PRK07231 1 MRLEGKVAIVTGASSGIGEGIARRFAAEGA-------RVVVTDRNE--EAAERVAAEILAGGRAIAVAADVSDEADVEAA 71 (251)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 666778999999999999999999999887 799999874 33332223333100 0011122222222222
Q ss_pred -------cCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHH
Q 020875 79 -------CTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILK 142 (320)
Q Consensus 79 -------l~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~ 142 (320)
+...|+||+++|...... .+ ..+.+..|+.....+.+.+..+. .....+|++|+....
T Consensus 72 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------ 145 (251)
T PRK07231 72 VAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGL------ 145 (251)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc------
Confidence 346799999998742111 11 23456677765555554444321 023456666653211
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
...+....++.++.....+...+++.++ +.+|+
T Consensus 146 ---~~~~~~~~y~~sk~~~~~~~~~~a~~~~--~~~i~ 178 (251)
T PRK07231 146 ---RPRPGLGWYNASKGAVITLTKALAAELG--PDKIR 178 (251)
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhh--hhCeE
Confidence 1122222345555444455566666654 33455
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.2e-06 Score=75.73 Aligned_cols=110 Identities=23% Similarity=0.275 Sum_probs=77.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc--ccCC------CCcceEEeCChh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD--AAFP------LLKGVVATTDAV 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~--~~~~------~~~~v~~~~~~~ 76 (320)
++||+|+| +|..|++|+..|.++++ +|+++.+++ + ...++.. .... +...+..++|+.
T Consensus 1 ~~kI~ViG-aGswGTALA~~la~ng~-------~V~lw~r~~--~----~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~ 66 (329)
T COG0240 1 MMKIAVIG-AGSWGTALAKVLARNGH-------EVRLWGRDE--E----IVAEINETRENPKYLPGILLPPNLKATTDLA 66 (329)
T ss_pred CceEEEEc-CChHHHHHHHHHHhcCC-------eeEEEecCH--H----HHHHHHhcCcCccccCCccCCcccccccCHH
Confidence 47999999 59999999999999997 899999874 2 2233432 2222 246788889999
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC-----cchhhHHHHHHH
Q 020875 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN-----PANTNALILKEF 144 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn-----P~~~~~~~~~~~ 144 (320)
++++++|+|++.. |. +.++++++.+..+-.++.+++.+|- +...+..++.+.
T Consensus 67 ~a~~~ad~iv~av--Ps--------------~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~ 123 (329)
T COG0240 67 EALDGADIIVIAV--PS--------------QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE 123 (329)
T ss_pred HHHhcCCEEEEEC--Ch--------------HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH
Confidence 9999999999974 32 4556666666544445667777762 234456666654
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-06 Score=89.63 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=72.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHh--cCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CCCCcceEEe-----CChhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIAR--GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FPLLKGVVAT-----TDAVE 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~--~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~-----~~~~~ 77 (320)
|||+||||+||+|++++..|+. .++ +|++++++.....+......+.+.. .....++... ....+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~-------~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~ 73 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA-------TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIA 73 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC-------EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHH
Confidence 5899999999999999999984 454 8998988642222221111110000 0011122211 11223
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
.++++|+|||+|+.... ..+..+....|+..++++++.+++.. . .+++.+|.
T Consensus 74 ~l~~~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~-~-~~~v~~SS 125 (657)
T PRK07201 74 ELGDIDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQ-A-ATFHHVSS 125 (657)
T ss_pred HhcCCCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcC-C-CeEEEEec
Confidence 34899999999986432 23455677899999999999998874 2 34565553
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.4e-06 Score=74.57 Aligned_cols=161 Identities=15% Similarity=0.197 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh----
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE---- 77 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~---- 77 (320)
+.+.++++|+||+|++|++++..|+++|. .|.+.+++. ++++....++.........++....+..+
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~-------~v~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGA-------IVGLHGTRV--EKLEALAAELGERVKIFPANLSDRDEVKALGQK 73 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence 34567999999999999999999999886 677777653 33332222221100000112211112222
Q ss_pred ---hcCCCcEEEEeCCCCCCC---C---CCHHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 78 ---ACTGVNIAVMVGGFPRKE---G---MERKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 78 ---al~~aDvVi~~ag~~~~~---~---~~r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
.+...|+||+++|..... . .+..+.+..|+.....+++.+.+.. .+...+|++|+.... .
T Consensus 74 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~ 144 (245)
T PRK12936 74 AEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGV---------T 144 (245)
T ss_pred HHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhC---------c
Confidence 234689999999874321 1 1233456778777666666554320 123567777764321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+.|....|+.++.....+.+.+++.+. +..++..
T Consensus 145 ~~~~~~~Y~~sk~a~~~~~~~la~~~~--~~~i~v~ 178 (245)
T PRK12936 145 GNPGQANYCASKAGMIGFSKSLAQEIA--TRNVTVN 178 (245)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhh--HhCeEEE
Confidence 223223466666555556666666643 2345533
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.8e-06 Score=76.92 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHH---hc---ccCC---------CCcce
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL---VD---AAFP---------LLKGV 69 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl---~~---~~~~---------~~~~v 69 (320)
.+||+|+| +|.+|+.++..|+..|+ +|+++|+++ +.++.....+ .+ .... ....+
T Consensus 3 ~~kIaViG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (287)
T PRK08293 3 IKNVTVAG-AGVLGSQIAFQTAFHGF-------DVTIYDISD--EALEKAKERIAKLADRYVRDLEATKEAPAEAALNRI 72 (287)
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCe
Confidence 45999999 59999999999999887 899999874 2222111111 00 0000 12356
Q ss_pred EEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 70 ~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
+.++++.+++++||+||.+.. .+.+..+++.+.+.++.++++ ++++|.+..
T Consensus 73 ~~~~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~--ii~sntSt~ 123 (287)
T PRK08293 73 TLTTDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKT--IFATNSSTL 123 (287)
T ss_pred EEeCCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCC--EEEECcccC
Confidence 677888888999999999852 113445666777777764555 345555443
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=77.76 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=93.4
Q ss_pred CCC-CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChh
Q 020875 1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV 76 (320)
Q Consensus 1 m~~-~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~ 76 (320)
|++ +.+++.|+||+|++|.+++..|+.+|+ +|++++++.. +.++....++...... ...++....+..
T Consensus 1 ~~~~~~k~vlItGasggiG~~l~~~l~~~G~-------~V~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~ 72 (248)
T PRK07806 1 MGDLPGKTALVTGSSRGIGADTAKILAGAGA-------HVVVNYRQKA-PRANKVVAEIEAAGGRASAVGADLTDEESVA 72 (248)
T ss_pred CCCCCCcEEEEECCCCcHHHHHHHHHHHCCC-------EEEEEeCCch-HhHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 543 347899999999999999999999887 7888877532 2222222223221100 112222222222
Q ss_pred hhc-------CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 77 EAC-------TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 77 ~al-------~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
+++ .+.|+||+.+|.......+..+.+..|......+++.+.++.....++|++|..... . .......|
T Consensus 73 ~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~---~-~~~~~~~~ 148 (248)
T PRK07806 73 ALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAH---F-IPTVKTMP 148 (248)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhh---c-CccccCCc
Confidence 222 368999999876432222334456778888888888887764233567777653210 0 00001122
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
....|+.++.-...+-+.++..+. +..++...
T Consensus 149 ~~~~Y~~sK~a~e~~~~~l~~~~~--~~~i~v~~ 180 (248)
T PRK07806 149 EYEPVARSKRAGEDALRALRPELA--EKGIGFVV 180 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhh--ccCeEEEE
Confidence 111345666656666556666554 44676444
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-06 Score=75.02 Aligned_cols=157 Identities=21% Similarity=0.174 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh--
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE-- 77 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~-- 77 (320)
.+.++++||||+|++|.+++..|++.|. +|+++++++ +.+.....++.+.... ...++....+..+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~-------~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA-------SVVVADINA--EGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMA 74 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 3457899999999999999999999886 899999864 2222222223221101 1112221111111
Q ss_pred -----hcCCCcEEEEeCCCCCC----C--CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHH
Q 020875 78 -----ACTGVNIAVMVGGFPRK----E--GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALIL 141 (320)
Q Consensus 78 -----al~~aDvVi~~ag~~~~----~--~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~ 141 (320)
.+...|+|||+||.... + ..+ ..+.+..|+.....+.+.+.++. .+..+++++|+-.
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~------- 147 (250)
T PRK07774 75 DATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTA------- 147 (250)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEeccc-------
Confidence 22468999999997421 1 112 22356678777777777666542 1234677776422
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+++...|+.++.....+.+.+++.+. ...|+..
T Consensus 148 -----~~~~~~~Y~~sK~a~~~~~~~l~~~~~--~~~i~v~ 181 (250)
T PRK07774 148 -----AWLYSNFYGLAKVGLNGLTQQLARELG--GMNIRVN 181 (250)
T ss_pred -----ccCCccccHHHHHHHHHHHHHHHHHhC--ccCeEEE
Confidence 122223466666655566666777664 3345543
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.9e-07 Score=85.86 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH--HHHHHhc--ccC-CCCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG--VKMELVD--AAF-PLLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~--~~~dl~~--~~~-~~~~~v~~~~~~~~a 78 (320)
+.+||+|+||+|++|++++..|+++|+ +|++++++.. +... ...++.. ... ....++....++.++
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-------~V~~l~R~~~--~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~ 129 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-------NVVAVAREKS--GIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKV 129 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEEechh--hccccchhhHHhhhcCCceEEEeeCCCHHHHHHH
Confidence 457999999999999999999999887 8888888642 1110 0001110 000 011233333345566
Q ss_pred cC----CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 79 CT----GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 79 l~----~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
++ ++|+||++++.+... ..+....|.....++++.+++.+ - .++|++|+
T Consensus 130 ~~~~~~~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~g-v-~r~V~iSS 182 (390)
T PLN02657 130 LFSEGDPVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVG-A-KHFVLLSA 182 (390)
T ss_pred HHHhCCCCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcC-C-CEEEEEee
Confidence 66 599999988753211 12335678888899999998875 2 35666664
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.7e-06 Score=73.27 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=64.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~al~~aD 83 (320)
|||+|+||+|.+|++++..|.+.|+ +|.++++++ ++++....+..+.... ....+.. ++..++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-------~V~v~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-------KIIIGSRDL--EKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-------EEEEEEcCH--HHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence 6899998679999999999999886 889999864 4444333333221100 1112222 24567899999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
+||++... ..+.++++.+.... .+..+|-++||.+
T Consensus 71 vVilavp~----------------~~~~~~l~~l~~~l-~~~vvI~~~ngi~ 105 (219)
T TIGR01915 71 VVILAVPW----------------DHVLKTLESLRDEL-SGKLVISPVVPLA 105 (219)
T ss_pred EEEEECCH----------------HHHHHHHHHHHHhc-cCCEEEEeccCce
Confidence 99998631 11233334444333 2346777899964
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-06 Score=77.18 Aligned_cols=150 Identities=16% Similarity=0.116 Sum_probs=89.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh-------h
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE-------A 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~-------a 78 (320)
++++||||+|++|++++..|++.|. +|+++|+++ ++......++.........++....+..+ .
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~-------~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGW-------QVVLADLDR--ERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999999886 899998763 22221111111100001112222112211 1
Q ss_pred cCCCcEEEEeCCCCCCCC-----CC---HHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 79 CTGVNIAVMVGGFPRKEG-----ME---RKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~-----~~---r~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
+...|++||.||...... .+ ..+.+..|+.....+.+.+.++- .....+|++|+.... .+.+
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~---------~~~~ 152 (255)
T PRK05717 82 FGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR---------QSEP 152 (255)
T ss_pred hCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc---------CCCC
Confidence 235799999998753211 12 23567889888888888886531 123567777754311 1222
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcC
Q 020875 150 AKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
..-.|+.++.-...+...+++.++
T Consensus 153 ~~~~Y~~sKaa~~~~~~~la~~~~ 176 (255)
T PRK05717 153 DTEAYAASKGGLLALTHALAISLG 176 (255)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhc
Confidence 223577777766677778888876
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=98.40 E-value=3e-07 Score=84.20 Aligned_cols=156 Identities=13% Similarity=0.194 Sum_probs=88.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~aD 83 (320)
|||+|+||+|++|+++...|..+++ +++.+++.. .|+.|.. ...+.++ ..|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~-------~v~~~~r~~---------~dl~d~~-----------~~~~~~~~~~pd 53 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY-------EVIATSRSD---------LDLTDPE-----------AVAKLLEAFKPD 53 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE-------EEEEESTTC---------S-TTSHH-----------HHHHHHHHH--S
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC-------EEEEeCchh---------cCCCCHH-----------HHHHHHHHhCCC
Confidence 7999999999999999999998876 788786541 2444332 1222222 489
Q ss_pred EEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc-c--hhhHHHHHHHCCCCCCCcEEEeeh
Q 020875 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP-A--NTNALILKEFAPSIPAKNITCLTR 158 (320)
Q Consensus 84 vVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP-~--~~~~~~~~~~~~~~~~~~i~~~t~ 158 (320)
+||++|+..... ...+..-...|+.....+++.+.+.+ +++|.+|.= + +.-..-..+. ....|...+|-++
T Consensus 54 ~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~---~~li~~STd~VFdG~~~~~y~E~-d~~~P~~~YG~~K 129 (286)
T PF04321_consen 54 VVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERG---ARLIHISTDYVFDGDKGGPYTED-DPPNPLNVYGRSK 129 (286)
T ss_dssp EEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT----EEEEEEEGGGS-SSTSSSB-TT-S----SSHHHHHH
T ss_pred eEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcC---CcEEEeeccEEEcCCcccccccC-CCCCCCCHHHHHH
Confidence 999999875321 12455677899999999999999875 677777742 1 0000000110 0112334678788
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCcccccc
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDV 196 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~ 196 (320)
+..++.... ... +..-+|...++|.++.+.+-.+
T Consensus 130 ~~~E~~v~~---~~~-~~~IlR~~~~~g~~~~~~~~~~ 163 (286)
T PF04321_consen 130 LEGEQAVRA---ACP-NALILRTSWVYGPSGRNFLRWL 163 (286)
T ss_dssp HHHHHHHHH---H-S-SEEEEEE-SEESSSSSSHHHHH
T ss_pred HHHHHHHHH---hcC-CEEEEecceecccCCCchhhhH
Confidence 776665433 222 4445566567898776554433
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.7e-06 Score=75.07 Aligned_cols=151 Identities=13% Similarity=0.075 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al---- 79 (320)
.+++|+||||+|++|++++..|+..|+ +|+++++++ ++++...............++....+..+++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-------RVVGTVRSE--AARADFEALHPDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-------EEEEEeCCH--HHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHH
Confidence 346899999999999999999999887 899999864 2222111100000000011222222222222
Q ss_pred ---CCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 80 ---TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 80 ---~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
...|+|||+||..... ..+. .+.+..|+.....+.+.+..+. ....++|++|+-... .+.
T Consensus 74 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~---------~~~ 144 (277)
T PRK06180 74 ATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGL---------ITM 144 (277)
T ss_pred HHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEeccccc---------CCC
Confidence 3589999999874311 1222 3347788888877777754321 022467777753211 123
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHc
Q 020875 149 PAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
|..-.|+.++.-...+...+++.+
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~ 168 (277)
T PRK06180 145 PGIGYYCGSKFALEGISESLAKEV 168 (277)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHh
Confidence 333356666554445555566654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.9e-06 Score=73.83 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=89.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++|+|+||+|++|..++..|++.|. +|++.++++ ++++.....+.+.... ...++....+..++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA-------EVILNGRDP--AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 46999999999999999999999887 899999864 3333333333221100 01122111122222
Q ss_pred ----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 ----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+...|+||+.+|...... .+ ..+.+..|+.....+.+.+.++.. ...++|++|+.... .
T Consensus 81 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~---------~ 151 (255)
T PRK07523 81 FEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSA---------L 151 (255)
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhc---------c
Confidence 345799999998753211 11 234566888777777776665421 23567777764321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
..+....++.++.....+-+.++..+. +..++.
T Consensus 152 ~~~~~~~y~~sK~a~~~~~~~~a~e~~--~~gi~v 184 (255)
T PRK07523 152 ARPGIAPYTATKGAVGNLTKGMATDWA--KHGLQC 184 (255)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhh--HhCeEE
Confidence 222222456666555556666666554 344553
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=73.11 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=95.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc-----hhHHHHHHHhcccCC---CCcceEEe
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-----ALNGVKMELVDAAFP---LLKGVVAT 72 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~-----~~~~~~~dl~~~~~~---~~~~v~~~ 72 (320)
|+.+.++++||||+|++|++++..|++.|. +|++++++.... .++....++...... ...++...
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~ 74 (273)
T PRK08278 2 MSLSGKTLFITGASRGIGLAIALRAARDGA-------NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDE 74 (273)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCH
Confidence 444557899999999999999999999886 899999864211 122222223211100 01222222
Q ss_pred CChhhhc-------CCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhh
Q 020875 73 TDAVEAC-------TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTN 137 (320)
Q Consensus 73 ~~~~~al-------~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~ 137 (320)
.+..+.+ ...|++|++||..... ..+. ...+..|+.....+++.+..+-. ..+.++++|.+...
T Consensus 75 ~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~- 153 (273)
T PRK08278 75 DQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNL- 153 (273)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhc-
Confidence 2222222 3689999999874321 1222 33566777777676666654310 23567777754321
Q ss_pred HHHHHHHCCC-CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 138 ALILKEFAPS-IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 138 ~~~~~~~~~~-~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+. ++....|+.++.-...+...+++.++ +..|+..
T Consensus 154 -------~~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~ 190 (273)
T PRK08278 154 -------DPKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVN 190 (273)
T ss_pred -------cccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEE
Confidence 111 13334678888877888888888876 3456643
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.6e-06 Score=75.47 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=83.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh-------h
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE-------A 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~-------a 78 (320)
++++||||+|++|++++..|++.|. .|.+.++++ +.+................+++...+..+ .
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-------RVAATVRRP--DALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAA 73 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999999886 788888763 22221111110000000112221112222 2
Q ss_pred cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCCCCC
Q 020875 79 CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSIPA 150 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~~~~ 150 (320)
+.+.|+|||+||...... .+ ....+..|+.....+.+.+.++. ....++|++|+-... .+.|.
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~ 144 (276)
T PRK06482 74 LGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQ---------IAYPG 144 (276)
T ss_pred cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccc---------cCCCC
Confidence 346899999998754211 11 23456788888888888863321 022466776653211 12333
Q ss_pred CcEEEeehhhHHHHHHHHHHHc
Q 020875 151 KNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.-.|+.++.-...+...+++.+
T Consensus 145 ~~~Y~~sK~a~~~~~~~l~~~~ 166 (276)
T PRK06482 145 FSLYHATKWGIEGFVEAVAQEV 166 (276)
T ss_pred CchhHHHHHHHHHHHHHHHHHh
Confidence 3356776665556666666664
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.5e-06 Score=74.38 Aligned_cols=155 Identities=15% Similarity=0.105 Sum_probs=84.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh-------h
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE-------A 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~-------a 78 (320)
|+|.|+||+|++|.+++..|++.|. +|+++++++ +++.....++.........++....+..+ .
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-------KVIATGRRQ--ERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999887 899999864 33332211111000000112211112222 2
Q ss_pred cCCCcEEEEeCCCCCC--C--CCCH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 79 CTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~--~--~~~r---~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
+.+.|+||+.+|.... + ..+. .+.+..|+.....+.+.+.++.. ....++++|+.... .+++
T Consensus 72 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~---------~~~~ 142 (248)
T PRK10538 72 WRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS---------WPYA 142 (248)
T ss_pred cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccC---------CCCC
Confidence 3479999999986421 1 1222 34567777765444444433220 22467777753211 1233
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
....++.++.-...+...+++.++ +..|+
T Consensus 143 ~~~~Y~~sK~~~~~~~~~l~~~~~--~~~i~ 171 (248)
T PRK10538 143 GGNVYGATKAFVRQFSLNLRTDLH--GTAVR 171 (248)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhc--CCCcE
Confidence 333566665555556666666654 34455
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.6e-06 Score=71.36 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=69.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+||||+|.+|+.++.++..+|+ ||..+-++++ ++... .++ .-...++...+.+.++++|-|+|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH-------eVTAivRn~~--K~~~~-~~~----~i~q~Difd~~~~a~~l~g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH-------EVTAIVRNAS--KLAAR-QGV----TILQKDIFDLTSLASDLAGHDAV 66 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC-------eeEEEEeChH--hcccc-ccc----eeecccccChhhhHhhhcCCceE
Confidence 7999999999999999999999999 8888888753 33210 000 01112333334567899999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
|.+-|.+. ++. +.+. .+....+...++..+ ..++++++.
T Consensus 67 IsA~~~~~-~~~--~~~~---~k~~~~li~~l~~ag--v~RllVVGG 105 (211)
T COG2910 67 ISAFGAGA-SDN--DELH---SKSIEALIEALKGAG--VPRLLVVGG 105 (211)
T ss_pred EEeccCCC-CCh--hHHH---HHHHHHHHHHHhhcC--CeeEEEEcC
Confidence 99877553 111 1121 234566777777765 367888764
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=80.33 Aligned_cols=169 Identities=15% Similarity=0.085 Sum_probs=97.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C-CCCcceEEeCChhhhcC--CC
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEACT--GV 82 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~al~--~a 82 (320)
||+|+||+|++|++++..|+++|+ +|+++|+... .... ....+.... . ....++....+..++++ +.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-------~V~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 71 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-------EVVVLDNLSN-GSPE-ALKRGERITRVTFVEGDLRDRELLDRLFEEHKI 71 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-------eEEEEeCCCc-cchh-hhhhhccccceEEEECCCCCHHHHHHHHHhCCC
Confidence 689999999999999999999886 7888875421 1111 111111100 0 00112222223444454 68
Q ss_pred cEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEe
Q 020875 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL 156 (320)
Q Consensus 83 DvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~ 156 (320)
|+||++||..... .....+.+..|+.....+++.+.+++ . .+++++|. ...... .+.+ .....+...++.
T Consensus 72 d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~ss-~~~~g~~~~~~~~e-~~~~~~~~~y~~ 147 (328)
T TIGR01179 72 DAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTG-V-KKFIFSSS-AAVYGEPSSIPISE-DSPLGPINPYGR 147 (328)
T ss_pred cEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcC-C-CEEEEecc-hhhcCCCCCCCccc-cCCCCCCCchHH
Confidence 9999999865321 12344567889999999999988875 2 34555553 211000 0000 001112234666
Q ss_pred ehhhHHHHHHHHHHH-cCCCCCCeeeeEEEcCC
Q 020875 157 TRLDHNRALGQISEK-LNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 157 t~ld~~r~~~~~a~~-l~v~~~~v~~~~v~G~h 188 (320)
++....++...+++. .+++..-+|...++|.+
T Consensus 148 sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~ 180 (328)
T TIGR01179 148 SKLMSERILRDLSKADPGLSYVILRYFNVAGAD 180 (328)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEecCcccCCC
Confidence 666666666666666 67777777766677754
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=69.92 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=106.2
Q ss_pred CCCC-CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc-ccCCCCcceEEeCC----
Q 020875 1 MAKE-PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AAFPLLKGVVATTD---- 74 (320)
Q Consensus 1 m~~~-~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~-~~~~~~~~v~~~~~---- 74 (320)
|+.- .+-+.||||++.+|.+++..|.+.|. .|+|..++. ++++..+.++.+ ...+..-+++...+
T Consensus 1 m~~~~~kv~lITGASSGiG~A~A~~l~~~G~-------~vvl~aRR~--drL~~la~~~~~~~~~~~~~DVtD~~~~~~~ 71 (246)
T COG4221 1 MTTLKGKVALITGASSGIGEATARALAEAGA-------KVVLAARRE--ERLEALADEIGAGAALALALDVTDRAAVEAA 71 (246)
T ss_pred CCCCCCcEEEEecCcchHHHHHHHHHHHCCC-------eEEEEeccH--HHHHHHHHhhccCceEEEeeccCCHHHHHHH
Confidence 4443 34578999999999999999999997 899999974 678887777764 11122334444322
Q ss_pred ---hhhhcCCCcEEEEeCCCCCCCC------CCHHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 75 ---AVEACTGVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 75 ---~~~al~~aDvVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
..+.+...|++|+-||...... +++..+++.|++.+... ++.+.+.. .+.+|++++=...
T Consensus 72 i~~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~--~G~IiN~~SiAG~----- 144 (246)
T COG4221 72 IEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK--SGHIINLGSIAGR----- 144 (246)
T ss_pred HHHHHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC--CceEEEecccccc-----
Confidence 4455668999999999754211 23556788998766555 55555543 4678888753321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
..||-..+|+.|+--..-|...+.+.+. .+.||...
T Consensus 145 ----~~y~~~~vY~ATK~aV~~fs~~LR~e~~--g~~IRVt~ 180 (246)
T COG4221 145 ----YPYPGGAVYGATKAAVRAFSLGLRQELA--GTGIRVTV 180 (246)
T ss_pred ----ccCCCCccchhhHHHHHHHHHHHHHHhc--CCCeeEEE
Confidence 1366667999988765555555544443 46777544
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.6e-06 Score=73.41 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=88.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC-------hh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AV 76 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~ 76 (320)
+.++++|+||+|++|++++..|+..|. +|+++++++ +.+.....++.........++....+ ..
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-------RVAITGRDP--ASLEAARAELGESALVIRADAGDVAAQKALAQALA 75 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCCH--HHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 346999999999999999999999886 789998863 22322221221000000011111011 12
Q ss_pred hhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCC
Q 020875 77 EACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~ 150 (320)
+.+...|+||+.+|...... .+ ....+..|+.....+.+.+.++-.....++++++.... .+.|.
T Consensus 76 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~---------~~~~~ 146 (249)
T PRK06500 76 EAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAH---------IGMPN 146 (249)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhc---------cCCCC
Confidence 22356899999998643211 12 23467789888888888887641122455666543211 12333
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|+.++.-...+-+.+++.+. +..|+.
T Consensus 147 ~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 175 (249)
T PRK06500 147 SSVYAASKAALLSLAKTLSGELL--PRGIRV 175 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 33456666555566666666653 345553
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.5e-06 Score=73.24 Aligned_cols=160 Identities=13% Similarity=0.075 Sum_probs=89.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA----- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (320)
+.++++|+||+|.+|.+++..|++.|. +|++.|++. +.++....++.........++....+..++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-------RVAIVDIDA--DNGAAVAASLGERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHH
Confidence 347999999999999999999999987 899999864 223222222211000011122222222222
Q ss_pred --cCCCcEEEEeCCCCCCC--CCC---HHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCcchhhHHHHHHHCCCCCC
Q 020875 79 --CTGVNIAVMVGGFPRKE--GME---RKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAPSIPA 150 (320)
Q Consensus 79 --l~~aDvVi~~ag~~~~~--~~~---r~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP~~~~~~~~~~~~~~~~~ 150 (320)
+...|++|+.||..... ..+ ..+.+..|+.....+.+.+...- .+...+|++|+-... .+.+.
T Consensus 76 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~---------~~~~~ 146 (261)
T PRK08265 76 ARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAK---------FAQTG 146 (261)
T ss_pred HHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhc---------cCCCC
Confidence 34679999999864321 122 23456667776666665544321 134567777653211 12222
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
.-.|+.++.-...+.+.++..+. +..|+...
T Consensus 147 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~ 177 (261)
T PRK08265 147 RWLYPASKAAIRQLTRSMAMDLA--PDGIRVNS 177 (261)
T ss_pred CchhHHHHHHHHHHHHHHHHHhc--ccCEEEEE
Confidence 22566666656667777777764 45676443
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.5e-06 Score=74.23 Aligned_cols=152 Identities=15% Similarity=0.089 Sum_probs=89.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C-CCCcceEEeCChhhhc---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEAC--- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~al--- 79 (320)
.++++||||+|.+|++++..|++.|. +|+++|++. +..+....++.... . ....++....+..+++
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~-------~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA-------KVCIVDLQD--DLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 46899999999999999999999887 899999863 22222222232110 0 0112222222233333
Q ss_pred ----CCCcEEEEeCCCCCCC-----CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHC
Q 020875 80 ----TGVNIAVMVGGFPRKE-----GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 80 ----~~aDvVi~~ag~~~~~-----~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
...|++||.||..... ..+ ....+..|+.....+.+.+.+.- ...+.++++++....
T Consensus 89 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~--------- 159 (280)
T PLN02253 89 VDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASA--------- 159 (280)
T ss_pred HHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhc---------
Confidence 3689999999875321 111 23467788777766666554321 123567777654321
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCC
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNV 174 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v 174 (320)
.+.+....|+.++.-...+-+.+++.++-
T Consensus 160 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 188 (280)
T PLN02253 160 IGGLGPHAYTGSKHAVLGLTRSVAAELGK 188 (280)
T ss_pred ccCCCCcccHHHHHHHHHHHHHHHHHhhh
Confidence 12222235788877777888888888764
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.4e-06 Score=74.37 Aligned_cols=160 Identities=18% Similarity=0.141 Sum_probs=87.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~~~~ 77 (320)
|.+++++|+|+||+|++|.+++..|+++|+ +|.++++++ ++......++....... ..++....+..+
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGA-------KVVIYDSNE--EAAEALAAELRAAGGEARVLVFDVSDEAAVRA 71 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCh--hHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 666667999999999999999999999887 789999864 23332222332111000 012211112222
Q ss_pred h-------cCCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHH
Q 020875 78 A-------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILK 142 (320)
Q Consensus 78 a-------l~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~ 142 (320)
+ +...|+||+++|..... ..+. .+.+..|+.....+.+.+.++- ....++|++|.-...
T Consensus 72 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~------ 145 (246)
T PRK05653 72 LIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGV------ 145 (246)
T ss_pred HHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhc------
Confidence 2 34569999998763221 1122 3356677777777776664321 022456666642211
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.++..-++.++.....+...+++.+. +.+++
T Consensus 146 ---~~~~~~~~y~~sk~~~~~~~~~l~~~~~--~~~i~ 178 (246)
T PRK05653 146 ---TGNPGQTNYSAAKAGVIGFTKALALELA--SRGIT 178 (246)
T ss_pred ---cCCCCCcHhHhHHHHHHHHHHHHHHHHh--hcCeE
Confidence 1222222345555544556566666543 33454
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9e-06 Score=71.91 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=90.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~ 77 (320)
|..+.++|+||||+|.+|++++..|+++|+ +++++.++. .........++...... ...++....+..+
T Consensus 1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (245)
T PRK12937 1 MTLSNKVAIVTGASRGIGAAIARRLAADGF-------AVAVNYAGS-AAAADELVAEIEAAGGRAIAVQADVADAAAVTR 72 (245)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCCC-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 666678999999999999999999999987 677776542 12222222222211100 0112222222333
Q ss_pred hc-------CCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 78 AC-------TGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 78 al-------~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
++ .+.|+||+.||...... . .....+..|+.....+++.+.+...+..+++++|.....
T Consensus 73 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~-------- 144 (245)
T PRK12937 73 LFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA-------- 144 (245)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc--------
Confidence 33 36899999998743111 1 123456788777777776665543234567777643211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|....|+.++.-...+-..+++.++ +..++.
T Consensus 145 -~~~~~~~~Y~~sK~a~~~~~~~~a~~~~--~~~i~v 178 (245)
T PRK12937 145 -LPLPGYGPYAASKAAVEGLVHVLANELR--GRGITV 178 (245)
T ss_pred -CCCCCCchhHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1233333566666555555566666654 334553
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.6e-06 Score=76.40 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=92.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-chhHHHHHH-Hhccc-----CC-----CCcceEEe
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKME-LVDAA-----FP-----LLKGVVAT 72 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-~~~~~~~~d-l~~~~-----~~-----~~~~v~~~ 72 (320)
.+||+|+| +|.+|+.+|..++..|+ +|+++|++++. ++....... +.... .. ....++.+
T Consensus 3 i~kv~ViG-aG~MG~gIA~~~A~~G~-------~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~ 74 (307)
T COG1250 3 IKKVAVIG-AGVMGAGIAAVFALAGY-------DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPT 74 (307)
T ss_pred ccEEEEEc-ccchhHHHHHHHhhcCC-------ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhcccc
Confidence 36999999 59999999999999776 89999997421 111111111 11111 00 12455655
Q ss_pred CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh-hHHHHHHHCCCC---
Q 020875 73 TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALILKEFAPSI--- 148 (320)
Q Consensus 73 ~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~-~~~~~~~~~~~~--- 148 (320)
+++ .++++||+||-++ -+|.+.-+++.+.+.++++|++ |++||.+.+ ++.+... ...
T Consensus 75 ~~~-~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia~~--~~rper 135 (307)
T COG1250 75 TDL-AALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELAEA--LKRPER 135 (307)
T ss_pred Cch-hHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHHHH--hCCchh
Confidence 554 4899999999874 2345677899999999987775 688887765 3343332 122
Q ss_pred --------CCC--c---EE--EeehhhHHHHHHHHHHHcCCCC
Q 020875 149 --------PAK--N---IT--CLTRLDHNRALGQISEKLNVQV 176 (320)
Q Consensus 149 --------~~~--~---i~--~~t~ld~~r~~~~~a~~l~v~~ 176 (320)
|+. + ++ -.|.-++......++++++-.|
T Consensus 136 ~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 136 FIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred EEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 222 1 22 2356677777778888888543
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.1e-06 Score=73.26 Aligned_cols=171 Identities=17% Similarity=0.163 Sum_probs=104.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-C---CCcceEEeCChhh-
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-P---LLKGVVATTDAVE- 77 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~---~~~~v~~~~~~~~- 77 (320)
+++++++||||++.||..++..|+.+|+ .++|+.|++ ++++....++.+... . ...|+....+...
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-------~liLvaR~~--~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l 74 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-------NLILVARRE--DKLEALAKELEDKTGVEVEVIPADLSDPEALERL 74 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCcH--HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHH
Confidence 3457999999999999999999999998 899999974 788888888876431 1 1123332222222
Q ss_pred --h----cCCCcEEEEeCCCCCCC------CCCHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 78 --A----CTGVNIAVMVGGFPRKE------GMERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 78 --a----l~~aDvVi~~ag~~~~~------~~~r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
. ....|+.|..||+.... ..+..+++..|+.. ++.+++.+.+.+ .+.+|++++-...+
T Consensus 75 ~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~--~G~IiNI~S~ag~~---- 148 (265)
T COG0300 75 EDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG--AGHIINIGSAAGLI---- 148 (265)
T ss_pred HHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEechhhcC----
Confidence 1 22589999999985421 12344677777654 455566666653 35688887543211
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccc
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVN 197 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S 197 (320)
+ -|..-+|+.|+---.-|-..+...| ....|+...| . .|.+.-..|.
T Consensus 149 ----p-~p~~avY~ATKa~v~~fSeaL~~EL--~~~gV~V~~v-~-PG~~~T~f~~ 195 (265)
T COG0300 149 ----P-TPYMAVYSATKAFVLSFSEALREEL--KGTGVKVTAV-C-PGPTRTEFFD 195 (265)
T ss_pred ----C-CcchHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEEE-e-cCcccccccc
Confidence 1 1322356666554444544555554 5566765432 3 4554444553
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-05 Score=70.07 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=87.1
Q ss_pred CCC-CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE-ecCCccchhHHHHHHHhcccCC---CCcceEEeCCh
Q 020875 1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA 75 (320)
Q Consensus 1 m~~-~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~-D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~ 75 (320)
|++ +.++|+|+||+|++|++++..|+++|. ++.+. .++. +++.....++...... ...++....+.
T Consensus 1 ~~~~~~~~ilItGasg~iG~~la~~l~~~G~-------~v~i~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i 71 (254)
T PRK12746 1 MKNLDGKVALVTGASRGIGRAIAMRLANDGA-------LVAIHYGRNK--QAADETIREIESNGGKAFLIEADLNSIDGV 71 (254)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCcEEEEEcCcCCHHHH
Confidence 554 247999999999999999999999886 66654 4432 3332222223211100 11223222222
Q ss_pred hhhcC-------------CCcEEEEeCCCCCCCC---CCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 76 VEACT-------------GVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 76 ~~al~-------------~aDvVi~~ag~~~~~~---~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
.++++ +.|+|||++|...... .+. ...+..|+.....+.+.+.++......++++|.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~ 151 (254)
T PRK12746 72 KKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVR 151 (254)
T ss_pred HHHHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhc
Confidence 22222 5899999998753211 121 3356688888888888777653223456666654211
Q ss_pred hHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+..-.|+.++.-...+-..+++.++
T Consensus 152 ---------~~~~~~~~Y~~sK~a~~~~~~~~~~~~~ 179 (254)
T PRK12746 152 ---------LGFTGSIAYGLSKGALNTMTLPLAKHLG 179 (254)
T ss_pred ---------CCCCCCcchHhhHHHHHHHHHHHHHHHh
Confidence 1223223466666655566666766654
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-06 Score=81.34 Aligned_cols=121 Identities=17% Similarity=0.066 Sum_probs=71.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHH-HHHHhcc---------------------c
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV-KMELVDA---------------------A 62 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~-~~dl~~~---------------------~ 62 (320)
.++|.||||+||+|++++..|+..+.- ..+|.++.+....+..... ..++.+. .
T Consensus 11 ~k~VlvTGaTGFlG~~ll~~LL~~~~~----v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv 86 (491)
T PLN02996 11 NKTILVTGATGFLAKIFVEKILRVQPN----VKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV 86 (491)
T ss_pred CCeEEEeCCCcHHHHHHHHHHHhhCCC----CCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence 468999999999999999988864320 1267766664322111100 0011100 0
Q ss_pred CCCCcceEE-------eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 63 FPLLKGVVA-------TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 63 ~~~~~~v~~-------~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
....+++.. .....+.++++|+|||+|+... ...+..+....|+..+.++++.+++.... .+++.+|
T Consensus 87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~-k~~V~vS 160 (491)
T PLN02996 87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKCVKV-KMLLHVS 160 (491)
T ss_pred EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEEEe
Confidence 001122221 1112355678999999998654 23455667889999999999999875312 2455554
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.3e-06 Score=72.53 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|..+.++|+||||+|++|++++..|++.|. +|++.+.+. .++++....++.........++....+..++++
T Consensus 1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~-------~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (253)
T PRK08642 1 MQISEQTVLVTGGSRGLGAAIARAFAREGA-------RVVVNYHQS-EDAAEALADELGDRAIALQADVTDREQVQAMFA 72 (253)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHCCC-------eEEEEcCCC-HHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 666667999999999999999999999886 677665432 122221111111000000112221122222232
Q ss_pred -------C-CcEEEEeCCCCC-------CC--CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhH
Q 020875 81 -------G-VNIAVMVGGFPR-------KE--GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNA 138 (320)
Q Consensus 81 -------~-aDvVi~~ag~~~-------~~--~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~ 138 (320)
. .|++|+.||... .+ ..+ ..+.+..|+.....+.+.+..+- ...+.++++++....
T Consensus 73 ~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~-- 150 (253)
T PRK08642 73 TATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ-- 150 (253)
T ss_pred HHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc--
Confidence 2 899999997521 00 112 22356777776666666654321 123567777754311
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
...++...|+.++.....+.+.+|+.++- ..|+
T Consensus 151 -------~~~~~~~~Y~~sK~a~~~l~~~la~~~~~--~~i~ 183 (253)
T PRK08642 151 -------NPVVPYHDYTTAKAALLGLTRNLAAELGP--YGIT 183 (253)
T ss_pred -------CCCCCccchHHHHHHHHHHHHHHHHHhCc--cCeE
Confidence 11222236788888788888888887763 4555
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.8e-06 Score=75.47 Aligned_cols=155 Identities=19% Similarity=0.129 Sum_probs=87.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh--
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-- 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-- 78 (320)
|+.+.+++.||||+|.+|++++..|++.|. +|++.++++ +.++.......+.......++....+..++
T Consensus 1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGA-------RVAVLDKSA--AGLQELEAAHGDAVVGVEGDVRSLDDHKEAVA 71 (262)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHhhcCCceEEEEeccCCHHHHHHHHH
Confidence 766678999999999999999999999987 899999863 223221111100000011122211122222
Q ss_pred -----cCCCcEEEEeCCCCCC--C--CC-------CHHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCcchhhHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRK--E--GM-------ERKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALIL 141 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~--~--~~-------~r~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP~~~~~~~~ 141 (320)
+...|++|+.||.... + .. ...+.+..|+.....+++.+.+.- ..+..+|++++....
T Consensus 72 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~----- 146 (262)
T TIGR03325 72 RCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGF----- 146 (262)
T ss_pred HHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEecccee-----
Confidence 3467999999986321 1 11 123456677776666666665431 112445555432211
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
...+..-.|+.++.-...+-+.+|+.++
T Consensus 147 ----~~~~~~~~Y~~sKaa~~~l~~~la~e~~ 174 (262)
T TIGR03325 147 ----YPNGGGPLYTAAKHAVVGLVKELAFELA 174 (262)
T ss_pred ----cCCCCCchhHHHHHHHHHHHHHHHHhhc
Confidence 0112122567777767777788888876
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.3e-06 Score=73.54 Aligned_cols=150 Identities=11% Similarity=0.035 Sum_probs=87.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC- 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al- 79 (320)
|..+.++++||||+|.+|.+++..|+..|. +|++++++... ...+ ........++....+..+.+
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~-------~v~~~~r~~~~-~~~~------~~~~~~~~D~~~~~~~~~~~~ 67 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGA-------TVVVCGRRAPE-TVDG------RPAEFHAADVRDPDQVAALVD 67 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCChhh-hhcC------CceEEEEccCCCHHHHHHHHH
Confidence 555668999999999999999999999886 79999986421 0000 00000011111111222222
Q ss_pred ------CCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 ------TGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|+||+.||...... . .....+..|+.....+.+.+.++- ....++|++|+-...
T Consensus 68 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~-------- 139 (252)
T PRK07856 68 AIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGR-------- 139 (252)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccC--------
Confidence 45699999998642111 1 123466788887777777665421 023567777753211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+..-.|+.++.-...+...++..++
T Consensus 140 -~~~~~~~~Y~~sK~a~~~l~~~la~e~~ 167 (252)
T PRK07856 140 -RPSPGTAAYGAAKAGLLNLTRSLAVEWA 167 (252)
T ss_pred -CCCCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 1223223567776666677777888776
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-05 Score=70.34 Aligned_cols=161 Identities=15% Similarity=0.137 Sum_probs=93.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~ 77 (320)
|..+.++++||||+|.+|.+++..|++.|. +|++.++++ +++.....++.+.... ...++....+..+
T Consensus 2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 2 MRLNGKVAIITGASSGIGRAAAKLFAREGA-------KVVVGARRQ--AELDQLVAEIRAEGGEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 444557899999999999999999999887 799999864 3444333344322110 0112222112222
Q ss_pred h-------cCCCcEEEEeCCCCC--CC--CCC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHH
Q 020875 78 A-------CTGVNIAVMVGGFPR--KE--GME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNAL 139 (320)
Q Consensus 78 a-------l~~aDvVi~~ag~~~--~~--~~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~ 139 (320)
. +...|++|+.||... .+ ..+ ....+..|+... +.+.+.+++.. ..++|++|+....
T Consensus 73 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~--~~~iv~~sS~~~~--- 147 (254)
T PRK07478 73 LVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG--GGSLIFTSTFVGH--- 147 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEechHhh---
Confidence 2 236899999998632 11 112 234567777544 44455555442 3567777653211
Q ss_pred HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
..+.+..-.|+.++.-...+-..+++.++ +..|+..
T Consensus 148 -----~~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~ 183 (254)
T PRK07478 148 -----TAGFPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVN 183 (254)
T ss_pred -----ccCCCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEE
Confidence 01233333577777767777777888765 3455543
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.1e-06 Score=74.42 Aligned_cols=152 Identities=16% Similarity=0.085 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~ 77 (320)
|..+.++++|+||+|++|++++..|++.|. +|++++++. +.+.....++. .... ...++....+..+
T Consensus 1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~ 70 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGIGRATAKLFAREGA-------RVVVADRDA--EAAERVAAAIA-AGGRAFARQGDVGSAEAVEA 70 (252)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCC-------eEEEecCCH--HHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHH
Confidence 666677999999999999999999999886 789998864 22332222222 1000 0112221112222
Q ss_pred h-------cCCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHH
Q 020875 78 A-------CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 78 a-------l~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
+ +.+.|+|||++|..... ..+. .+.+..|+.....+.+. +++.. ..+++++|+-...
T Consensus 71 ~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~sS~~~~---- 144 (252)
T PRK06138 71 LVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG--GGSIVNTASQLAL---- 144 (252)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC--CeEEEEECChhhc----
Confidence 2 24789999999874321 1122 23466777666544444 44432 3456666643211
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+....++.++.-...+...+++.+.
T Consensus 145 -----~~~~~~~~Y~~sK~a~~~~~~~l~~~~~ 172 (252)
T PRK06138 145 -----AGGRGRAAYVASKGAIASLTRAMALDHA 172 (252)
T ss_pred -----cCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1222223456666555566666776653
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.6e-06 Score=71.73 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCChhhh--
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEA-- 78 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a-- 78 (320)
...++|+|+||+|++|++++..|+..|. +|+++++++ +++.....++.+... ....++....++.+.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGY-------KVAITARDQ--KELEEAAAELNNKGNVLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCC-------EEEEeeCCH--HHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHH
Confidence 3447899999999999999999998886 799999864 333322233322100 001122111122222
Q ss_pred -----cCCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCc
Q 020875 79 -----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA-APNCKVLVVANP 133 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP 133 (320)
+..+|+||+++|..... ..+. .+.+..|+.....+.+.+.+.. .....+|++|+.
T Consensus 75 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 75 AIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 34789999999864321 1122 2456677776666666654431 123456666654
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.4e-06 Score=73.02 Aligned_cols=155 Identities=11% Similarity=0.081 Sum_probs=85.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
+.++|+|+||+|.+|.+++..|++.|. .|+++++++..+.+. ..+.+.... ...++....+..+.+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-------DIIITTHGTNWDETR---RLIEKEGRKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCcHHHHHH---HHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 347899999999999999999999887 788888763212221 122211100 111222222222222
Q ss_pred ------CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 80 ------TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
...|++|+++|..... ..+ ..+.+..|+.....+.+. +++.. ...+|++|+....
T Consensus 84 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------- 154 (258)
T PRK06935 84 EALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG--SGKIINIASMLSF------- 154 (258)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC--CeEEEEECCHHhc-------
Confidence 3679999999874321 111 234456676665444444 44332 3567777754311
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+-+.+++.++ +..|+.
T Consensus 155 --~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 188 (258)
T PRK06935 155 --QGGKFVPAYTASKHGVAGLTKAFANELA--AYNIQV 188 (258)
T ss_pred --cCCCCchhhHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 1112112456666666667777777765 445653
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=77.67 Aligned_cols=124 Identities=16% Similarity=0.197 Sum_probs=76.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC----C-----CcceEEeCCh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----L-----LKGVVATTDA 75 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~----~-----~~~v~~~~~~ 75 (320)
+|||+|+| +|+||..++..|++.|+- .+|+.+|+++ ++++...........+ + ...++.+++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g-----~~V~gvD~~~--~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~ 72 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPD-----IEVVVVDISV--PRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDV 72 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCC-----CeEEEEECCH--HHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCH
Confidence 58999999 699999999999987531 1799999874 4443221111000000 0 1247888888
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEE-cCcchhh
Q 020875 76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPANTN 137 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~-snP~~~~ 137 (320)
.+++++||++|++.+.|........+ -..+...+...++.|.++.+++..+|+= |-|.++.
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt 134 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChH
Confidence 88999999999999988743210000 0123345666777777765333333333 4577653
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.3e-06 Score=72.74 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=86.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhh------
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEA------ 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a------ 78 (320)
++++|+||+|++|++++..|++.|. +|++++++. +.++....++...... ...++....+..++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-------RVGAYDINE--AGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999886 799999864 3333222222111100 01122221222222
Q ss_pred --cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 79 --CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 79 --l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
....|+||++||...... .+ ....+..|+.....+.+.+..+- .+...++++|..... .+.
T Consensus 73 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~---------~~~ 143 (260)
T PRK08267 73 ATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAI---------YGQ 143 (260)
T ss_pred HcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhC---------cCC
Confidence 235699999998754211 11 34467788887777766654321 133567777754321 111
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEE
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVII 184 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v 184 (320)
+..-.|+.++.....+...++..+. +..++...|
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~l~~~~~--~~~i~v~~i 177 (260)
T PRK08267 144 PGLAVYSATKFAVRGLTEALDLEWR--RHGIRVADV 177 (260)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence 1111345555444455555665543 345664443
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=71.12 Aligned_cols=157 Identities=14% Similarity=0.045 Sum_probs=88.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
+.++|+|+||+|.+|++++..|++.|. +|+++++++ +.+.....++...... ...++....+..+.+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 76 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-------KVVVADRDA--AGGEETVALIREAGGEALFVACDVTRDAEVKALVE 76 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 457999999999999999999999886 899999864 3333333333321110 011222111222222
Q ss_pred ------CCCcEEEEeCCCCCCC----CCCH---HHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 80 ------TGVNIAVMVGGFPRKE----GMER---KDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~----~~~r---~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
...|+||+.+|..... ..+. .+.+..|+.....+.+. +.+. ....++++|+....
T Consensus 77 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~ii~~sS~~~~------ 148 (253)
T PRK06172 77 QTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ--GGGAIVNTASVAGL------ 148 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEECchhhc------
Confidence 3469999999874321 1122 33566777766554443 3333 23456666653211
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.+..-.|+.++.....+-..+++.+. +.+++..
T Consensus 149 ---~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~~i~v~ 183 (253)
T PRK06172 149 ---GAAPKMSIYAASKHAVIGLTKSAAIEYA--KKGIRVN 183 (253)
T ss_pred ---cCCCCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEE
Confidence 1223223466666656667777777764 4566643
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-06 Score=74.83 Aligned_cols=151 Identities=21% Similarity=0.139 Sum_probs=84.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh--
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-- 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-- 78 (320)
|+.+.++|+|+||+|++|++++..|+++|.. +|++++++. +++.. ..........++....+..+.
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~------~V~~~~r~~--~~~~~----~~~~~~~~~~D~~~~~~~~~~~~ 69 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAA------KVYAAARDP--ESVTD----LGPRVVPLQLDVTDPASVAAAAE 69 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCcc------cEEEEecCh--hhhhh----cCCceEEEEecCCCHHHHHHHHH
Confidence 4556679999999999999999999988852 688888764 22221 000000001122111222232
Q ss_pred -cCCCcEEEEeCCCCCCC----CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 79 -CTGVNIAVMVGGFPRKE----GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 79 -l~~aDvVi~~ag~~~~~----~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
+...|+||+++|..... ..+ ..+.+..|+.....+.+.+.+.. ....+++++|+.... .+.
T Consensus 70 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~---------~~~ 140 (238)
T PRK08264 70 AASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSW---------VNF 140 (238)
T ss_pred hcCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhc---------cCC
Confidence 33589999999873211 112 23346677777777777654321 123567777754321 122
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHc
Q 020875 149 PAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
+....++.++.-...+...+++.+
T Consensus 141 ~~~~~y~~sK~a~~~~~~~l~~~~ 164 (238)
T PRK08264 141 PNLGTYSASKAAAWSLTQALRAEL 164 (238)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHh
Confidence 322345666555555666666665
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.1e-06 Score=73.95 Aligned_cols=147 Identities=15% Similarity=0.131 Sum_probs=80.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC- 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al- 79 (320)
|. +.++|+||||+|++|++++..|+++|. +|++.+++.+ .+.. ..+. .....++....+..+++
T Consensus 1 m~-~~~~vlVtGasg~iG~~~a~~l~~~g~-------~V~~~~r~~~--~~~~----~~~~-~~~~~D~~d~~~~~~~~~ 65 (270)
T PRK06179 1 MS-NSKVALVTGASSGIGRATAEKLARAGY-------RVFGTSRNPA--RAAP----IPGV-ELLELDVTDDASVQAAVD 65 (270)
T ss_pred CC-CCCEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCChh--hccc----cCCC-eeEEeecCCHHHHHHHHH
Confidence 44 345899999999999999999999886 7899998642 1111 0000 00011222222233333
Q ss_pred ------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 80 ------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
...|+||++||...... .+ ....+..|......+.+. +++.+ ..++|++|+....
T Consensus 66 ~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~iv~isS~~~~------- 136 (270)
T PRK06179 66 EVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG--SGRIINISSVLGF------- 136 (270)
T ss_pred HHHHhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEECCcccc-------
Confidence 35799999999753211 11 234567777666666555 44443 3567777754321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|..-.++.++.-...+...+++.++
T Consensus 137 --~~~~~~~~Y~~sK~a~~~~~~~l~~el~ 164 (270)
T PRK06179 137 --LPAPYMALYAASKHAVEGYSESLDHEVR 164 (270)
T ss_pred --CCCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 1122222345554444445555555543
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=70.53 Aligned_cols=156 Identities=13% Similarity=0.166 Sum_probs=85.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++++|+||+|++|.+++..|+.+|. +|++++++. +++.....++...... ...++....+..+++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV-------NVGLLARTE--ENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999887 799999864 3333222333211100 011221112222233
Q ss_pred -----CCCcEEEEeCCCCCCCC---CCH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 80 -----TGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~~---~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
.++|+||+++|...... .+. .+.+..|+.....+.+.+..+. ....+++++|+.... .
T Consensus 78 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~---------~ 148 (239)
T PRK07666 78 LKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQ---------K 148 (239)
T ss_pred HHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhc---------c
Confidence 47999999998753211 122 3456777776666666555321 022456666654321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+.+....|+.++.-...+...+++.+. +..++
T Consensus 149 ~~~~~~~Y~~sK~a~~~~~~~~a~e~~--~~gi~ 180 (239)
T PRK07666 149 GAAVTSAYSASKFGVLGLTESLMQEVR--KHNIR 180 (239)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhh--ccCcE
Confidence 222222345554433445555665542 33454
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=73.27 Aligned_cols=105 Identities=22% Similarity=0.334 Sum_probs=67.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhH-HH--H----HHHhccc-C------CCCcceE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GV--K----MELVDAA-F------PLLKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~-~~--~----~dl~~~~-~------~~~~~v~ 70 (320)
..||+|+| +|.+|..++..++..|+ +|+++|+++ ++++ +. . ..+.+.. . .....++
T Consensus 3 ~~kI~VIG-~G~mG~~ia~~la~~g~-------~V~~~d~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~ 72 (282)
T PRK05808 3 IQKIGVIG-AGTMGNGIAQVCAVAGY-------DVVMVDISD--AAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT 72 (282)
T ss_pred ccEEEEEc-cCHHHHHHHHHHHHCCC-------ceEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 35899999 69999999999999887 799999874 3332 11 0 0111110 0 0113566
Q ss_pred EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
.+++. +++++||+||.++- .+...-+++.+.+.+++++++++ +||..++
T Consensus 73 ~~~~~-~~~~~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~ 121 (282)
T PRK05808 73 GTTDL-DDLKDADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAIL--ATNTSSL 121 (282)
T ss_pred EeCCH-HHhccCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcEE--EECCCCC
Confidence 66665 56899999999852 11234467777788877566543 5665544
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=72.82 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--C---CCcceEEeCChhh
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--P---LLKGVVATTDAVE 77 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~---~~~~v~~~~~~~~ 77 (320)
.+.+++.|+||+|++|++++..|+++|+ +|+++++++ ++++....++..... . ...++....+..+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~ 75 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-------AVMIVGRNP--DKLAAAAEEIEALKGAGAVRYEPADVTDEDQVAR 75 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHH
Confidence 3457999999999999999999999987 799999863 333333333321110 0 0112222112222
Q ss_pred hc-------CCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHH
Q 020875 78 AC-------TGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALIL 141 (320)
Q Consensus 78 al-------~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~ 141 (320)
.+ ...|++|+.+|.... + ..+ ..+.+..|+.....+.+.+.+.. ....+++++|+...
T Consensus 76 ~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~------ 149 (276)
T PRK05875 76 AVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAA------ 149 (276)
T ss_pred HHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhh------
Confidence 23 368999999985421 1 112 23345667777777766554431 02356777765321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
....|..-.|+.++.....+...+++.++ +..++..
T Consensus 150 ---~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~ 185 (276)
T PRK05875 150 ---SNTHRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVN 185 (276)
T ss_pred ---cCCCCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEE
Confidence 01222223567777766677777777765 3566644
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=70.92 Aligned_cols=162 Identities=16% Similarity=0.141 Sum_probs=87.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~ 77 (320)
|..+.++|+|+||+|++|++++..|++.|. +|++..++.. ........++...... ...++....++.+
T Consensus 1 ~~~~~~~vlItG~sg~iG~~l~~~l~~~G~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (248)
T PRK05557 1 MSLEGKVALVTGASRGIGRAIAERLAAQGA-------NVVINYASSE-AGAEALVAEIGALGGKALAVQGDVSDAESVER 72 (248)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCch-hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 666778999999999999999999999887 6766665431 1222222222211100 0112221112222
Q ss_pred h-------cCCCcEEEEeCCCCCCCC---CCH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHH
Q 020875 78 A-------CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILK 142 (320)
Q Consensus 78 a-------l~~aDvVi~~ag~~~~~~---~~r---~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~ 142 (320)
+ +.+.|+|||++|...... .+. ...+..|+.....+.+.+..+.. ...+++++|+....
T Consensus 73 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~------ 146 (248)
T PRK05557 73 AVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGL------ 146 (248)
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccC------
Confidence 2 346899999998643211 122 23456788777777777765421 22467777653211
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+...-++.++.....+.+.+++.+. ...++.
T Consensus 147 ---~~~~~~~~y~~sk~a~~~~~~~~a~~~~--~~~i~~ 180 (248)
T PRK05557 147 ---MGNPGQANYAASKAGVIGFTKSLARELA--SRGITV 180 (248)
T ss_pred ---cCCCCCchhHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 1122222344444444445555666543 334553
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-05 Score=70.67 Aligned_cols=118 Identities=20% Similarity=0.202 Sum_probs=69.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++|+|+||+|++|++++..|+++|+ +|++++++. +++.....++...... ...++....+..++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-------KVVIADLND--EAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999999887 899999864 3333333333221100 11222222222222
Q ss_pred ----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 79 ----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+.+.|+||+++|...... .+ ..+.+..|+.. ++.+.+.+++.. ..+++++|+-
T Consensus 75 ~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~iss~ 141 (258)
T PRK12429 75 AVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG--GGRIINMASV 141 (258)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC--CeEEEEEcch
Confidence 246899999998643211 11 22345566665 555666666543 3466666653
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-05 Score=70.09 Aligned_cols=159 Identities=11% Similarity=0.058 Sum_probs=89.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC--ccchhHHHHHHHhcccCC---CCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFP---LLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~--~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a 78 (320)
+.++++|+||+|++|.+++..|+..|. ++++++.+. +.+.++....++...... ...++....+..+.
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~-------~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 79 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGA-------KAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKL 79 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-------cEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHH
Confidence 346899999999999999999999886 656665432 112222222222211100 11222222222222
Q ss_pred -------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEE-cCcchhhHHHHHHH
Q 020875 79 -------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPANTNALILKEF 144 (320)
Q Consensus 79 -------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~-snP~~~~~~~~~~~ 144 (320)
+...|++|+.||..... ..+ ....+..|+.....+++.+.+.-.+...++++ |.....
T Consensus 80 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~-------- 151 (257)
T PRK12744 80 FDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA-------- 151 (257)
T ss_pred HHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc--------
Confidence 24689999999874311 112 23456778777766777665542123344444 332211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
..|....|+.++.....+-+.+++.++ +..|+.
T Consensus 152 --~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v 184 (257)
T PRK12744 152 --FTPFYSAYAGSKAPVEHFTRAASKEFG--ARGISV 184 (257)
T ss_pred --cCCCcccchhhHHHHHHHHHHHHHHhC--cCceEE
Confidence 012223578888877888888988876 345653
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.7e-05 Score=68.63 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=87.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh-----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE----- 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~----- 77 (320)
++++|+||+|++|.+++..|++.|. +|++++++. +.++....++.+.... ...++....+..+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-------KVAIVDYNE--ETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4789999999999999999999886 899999864 3333333333321100 1112222212222
Q ss_pred --hcCCCcEEEEeCCCCCC-CC--CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 78 --ACTGVNIAVMVGGFPRK-EG--ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 78 --al~~aDvVi~~ag~~~~-~~--~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.+.+.|+|||++|.... +. .+ ....+..|+.....+.+.+ ++.. ++.+++++|+....
T Consensus 74 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~~iv~~sS~~~~--------- 143 (256)
T PRK08643 74 VDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLG-HGGKIINATSQAGV--------- 143 (256)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCCEEEEECccccc---------
Confidence 23468999999987432 11 11 2335667776554444444 3332 34577777754321
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|....|+.++.-...+.+.+++.+ .+..|+.
T Consensus 144 ~~~~~~~~Y~~sK~a~~~~~~~la~e~--~~~gi~v 177 (256)
T PRK08643 144 VGNPELAVYSSTKFAVRGLTQTAARDL--ASEGITV 177 (256)
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHh--cccCcEE
Confidence 122222346666665556666677765 3455663
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=71.83 Aligned_cols=161 Identities=17% Similarity=0.263 Sum_probs=92.3
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC-CCcEEE
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-GVNIAV 86 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~-~aDvVi 86 (320)
|+|+||+|+||++|+..|..+|+ +|.++-++.. +.+. ++ +.. +..-..+.+... ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-------~v~iltR~~~--~~~~---~~-~~~------v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-------QVTILTRRPP--KASQ---NL-HPN------VTLWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-------eEEEEEcCCc--chhh---hc-Ccc------ccccchhhhcccCCCCEEE
Confidence 68999999999999999999998 7888877642 2221 11 110 111112333333 799999
Q ss_pred EeCCCCCCCC----CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeeh----
Q 020875 87 MVGGFPRKEG----MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR---- 158 (320)
Q Consensus 87 ~~ag~~~~~~----~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~---- 158 (320)
++||.|-... .....+...-+..++.+.+.|.+.. ....+++-++-++.- |....++++-..
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~-~~P~~~isaSAvGyY---------G~~~~~~~tE~~~~g~ 131 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASE-TKPKVLISASAVGYY---------GHSGDRVVTEESPPGD 131 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhcc-CCCcEEEecceEEEe---------cCCCceeeecCCCCCC
Confidence 9999864221 1234566777889999999999765 334333333333210 111111222110
Q ss_pred -------hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC---Ccccccccc
Q 020875 159 -------LDHNRALGQISEKLNVQVSDVKNVIIWGNHS---SSQYPDVNH 198 (320)
Q Consensus 159 -------ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg---~~~~~~~S~ 198 (320)
.+=+. ...=|+.+|....-.|.-+|+|.-| ..|.|+++.
T Consensus 132 ~Fla~lc~~WE~-~a~~a~~~gtRvvllRtGvVLs~~GGaL~~m~~~fk~ 180 (297)
T COG1090 132 DFLAQLCQDWEE-EALQAQQLGTRVVLLRTGVVLSPDGGALGKMLPLFKL 180 (297)
T ss_pred ChHHHHHHHHHH-HHhhhhhcCceEEEEEEEEEecCCCcchhhhcchhhh
Confidence 11111 1123455676666677667788555 367888754
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.8e-06 Score=82.82 Aligned_cols=135 Identities=13% Similarity=0.081 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc--CC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC--TG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al--~~ 81 (320)
..|||+||||+||+|++|+..|..+|+ ++... .. |+.|.. .+...+ .+
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~-------~v~~~-~~-----------~l~d~~-----------~v~~~i~~~~ 428 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGI-------AYEYG-KG-----------RLEDRS-----------SLLADIRNVK 428 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCC-------eEEee-cc-----------ccccHH-----------HHHHHHHhhC
Confidence 358999999999999999999998876 55211 10 111110 111122 26
Q ss_pred CcEEEEeCCCCCCCC-----CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC-cc-hhh-------HHHHHHHCCC
Q 020875 82 VNIAVMVGGFPRKEG-----MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN-PA-NTN-------ALILKEFAPS 147 (320)
Q Consensus 82 aDvVi~~ag~~~~~~-----~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn-P~-~~~-------~~~~~~~~~~ 147 (320)
.|+|||+|+....+. .+..+.+..|+..+.++++.+++.+ ++++++|. .+ +-- ..-+.+...-
T Consensus 429 pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g---~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~ 505 (668)
T PLN02260 429 PTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENG---LLMMNFATGCIFEYDAKHPEGSGIGFKEEDKP 505 (668)
T ss_pred CCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcC---CeEEEEcccceecCCcccccccCCCCCcCCCC
Confidence 899999998753221 2456678899999999999999975 34556642 21 000 0001111011
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHH
Q 020875 148 IPAKNITCLTRLDHNRALGQISEK 171 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~ 171 (320)
.|+...||.+++...++...+++.
T Consensus 506 ~~~~~~Yg~sK~~~E~~~~~~~~~ 529 (668)
T PLN02260 506 NFTGSFYSKTKAMVEELLREYDNV 529 (668)
T ss_pred CCCCChhhHHHHHHHHHHHhhhhh
Confidence 122357899988887776555443
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.4e-05 Score=69.35 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=86.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC----CCcceEEeCChhhhc-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTDAVEAC- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~~~~~~~al- 79 (320)
|++|+|+||+|++|.+++..|++.|+ +|+++++++ +++.....++...... ...++....+..+.+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 71 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA-------RLYLAARDV--ERLERLADDLRARGAVAVSTHELDILDTASHAAFLD 71 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHH
Confidence 35899999999999999999999886 799999864 3333333333221100 112222222222222
Q ss_pred ---CCCcEEEEeCCCCCC---CCCCHH---HHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 80 ---TGVNIAVMVGGFPRK---EGMERK---DVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 80 ---~~aDvVi~~ag~~~~---~~~~r~---~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
+..|+||+.+|.... ...+.+ +.+..|+.....+.+.+..+-. ....++++|..... .+.
T Consensus 72 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~ 142 (243)
T PRK07102 72 SLPALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGD---------RGR 142 (243)
T ss_pred HHhhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEeccccc---------CCC
Confidence 246999999886421 112222 3567787777777666554310 23567777654211 112
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+..-.++.++.-...+...++..+. ...++.
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~l~~el~--~~gi~v 173 (243)
T PRK07102 143 ASNYVYGSAKAALTAFLSGLRNRLF--KSGVHV 173 (243)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhh--ccCcEE
Confidence 2222466666555555555665543 334543
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-05 Score=70.90 Aligned_cols=159 Identities=16% Similarity=0.059 Sum_probs=88.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC------
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD------ 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~------ 74 (320)
|+.+.++|+||||+|.+|.+++..|+++|. .|++.++++ ++++....++.... ....++....+
T Consensus 1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~ 70 (273)
T PRK07825 1 DDLRGKVVAITGGARGIGLATARALAALGA-------RVAIGDLDE--ALAKETAAELGLVV-GGPLDVTDPASFAAFLD 70 (273)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhccce-EEEccCCCHHHHHHHHH
Confidence 667778999999999999999999999887 788888864 33332222222110 00112211111
Q ss_pred -hhhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 75 -AVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 75 -~~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
..+.+.+.|++|+.||...... .+ ....+..|+.....+ .+.+.+.+ ...++++|+-...
T Consensus 71 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------- 141 (273)
T PRK07825 71 AVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG--RGHVVNVASLAGK------- 141 (273)
T ss_pred HHHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEEEcCcccc-------
Confidence 1222357899999998743211 11 233566777654444 44444443 3567777754321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.|..-.|+.++.-...+...++..+. +.+++..
T Consensus 142 --~~~~~~~~Y~asKaa~~~~~~~l~~el~--~~gi~v~ 176 (273)
T PRK07825 142 --IPVPGMATYCASKHAVVGFTDAARLELR--GTGVHVS 176 (273)
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHHhh--ccCcEEE
Confidence 1223222455555544445555655543 4455543
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=72.21 Aligned_cols=151 Identities=14% Similarity=0.052 Sum_probs=88.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~~~~a-- 78 (320)
+.++++|+||+|++|.+++..|+.+|. +|++.+++. ++++....++....... ..+++...+..++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-------DVLIAARTE--SQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAG 79 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 347899999999999999999999887 899999864 33333333332211000 1122111122222
Q ss_pred -----cCCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~~----~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+...|+|||.||...... . +..+.+..|+.....+.+.+.+ .. ....++++|+-...
T Consensus 80 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~g~iv~~sS~~~~------- 151 (263)
T PRK07814 80 QAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHS-GGGSVINISSTMGR------- 151 (263)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhc-CCeEEEEEcccccc-------
Confidence 346899999998643211 1 1234567787777777777654 22 34567777753221
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+....|+.++.-...+...++..+.
T Consensus 152 --~~~~~~~~Y~~sK~a~~~~~~~~~~e~~ 179 (263)
T PRK07814 152 --LAGRGFAAYGTAKAALAHYTRLAALDLC 179 (263)
T ss_pred --CCCCCCchhHHHHHHHHHHHHHHHHHHC
Confidence 1222223567776656667777777764
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.1e-06 Score=73.66 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=87.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChh-
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV- 76 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~- 76 (320)
|-...++|+|+||+|+||++++..|+.+|. +|++.++++ +.++....++...... ...++....+..
T Consensus 1 ~~l~~k~vlItGa~~~IG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (258)
T PRK07890 1 MLLKGKVVVVSGVGPGLGRTLAVRAARAGA-------DVVLAARTA--ERLDEVAAEIDDLGRRALAVPTDITDEDQCAN 71 (258)
T ss_pred CccCCCEEEEECCCCcHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHHhCCceEEEecCCCCHHHHHH
Confidence 445567999999999999999999999987 899999864 3333333333211100 112222211222
Q ss_pred ------hhcCCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcchhhHHHHH
Q 020875 77 ------EACTGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALILK 142 (320)
Q Consensus 77 ------~al~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~~~~~~~~ 142 (320)
+.+...|+|||.||.... + ..+ ..+.+..|+.....+.+.+.++-. ...++|++|+...
T Consensus 72 ~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~------- 144 (258)
T PRK07890 72 LVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVL------- 144 (258)
T ss_pred HHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhh-------
Confidence 223468999999986421 1 112 234577888877777777765321 1236677665321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
. .+.+....++.++.-...+.+.+++.+
T Consensus 145 ~--~~~~~~~~Y~~sK~a~~~l~~~~a~~~ 172 (258)
T PRK07890 145 R--HSQPKYGAYKMAKGALLAASQSLATEL 172 (258)
T ss_pred c--cCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 1 122322345555544445555566554
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.6e-05 Score=71.67 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=90.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChh-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV----- 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~----- 76 (320)
.++|+||||+|++|.+++..|+..|. +|++.+++.+...++.....+...... ...++....+..
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-------~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-------DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-------EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence 36899999999999999999999886 787776643222222222222221110 111222221222
Q ss_pred --hhcCCCcEEEEeCCCCCC--C--CC---CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 77 --EACTGVNIAVMVGGFPRK--E--GM---ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 77 --~al~~aDvVi~~ag~~~~--~--~~---~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+.+...|++|+.||.... + .. ...+.+..|+.....+++.+.++-.+..++|++|+.... .+
T Consensus 128 ~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~---------~~ 198 (300)
T PRK06128 128 AVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSY---------QP 198 (300)
T ss_pred HHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCcccc---------CC
Confidence 223468999999986421 1 11 234567889988888888887653234567776653211 11
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+..-.|+.++.-...+-+.+++.+. +..|+
T Consensus 199 ~~~~~~Y~asK~a~~~~~~~la~el~--~~gI~ 229 (300)
T PRK06128 199 SPTLLDYASTKAAIVAFTKALAKQVA--EKGIR 229 (300)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhh--hcCcE
Confidence 12112356666656666677777654 33454
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-05 Score=71.94 Aligned_cols=149 Identities=7% Similarity=0.068 Sum_probs=83.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhc-----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEAC----- 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al----- 79 (320)
++|+||||+|++|.+++..|++.|. +|++.++++ +.+.. +.+... ....++....+..+++
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~-------~Vi~~~r~~--~~~~~----l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW-------RVFATCRKE--EDVAA----LEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHH----HHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999886 899999864 22321 111110 0111222211222222
Q ss_pred ---CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 80 ---TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 80 ---~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
...|++|+.||...... .+ ....+..|+.. ++.+++.+++.+ ..++|++|+.... .
T Consensus 72 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~--~g~iv~isS~~~~---------~ 140 (277)
T PRK05993 72 LSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG--QGRIVQCSSILGL---------V 140 (277)
T ss_pred HcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC--CCEEEEECChhhc---------C
Confidence 25799999998743211 12 23456777766 666777776654 3567777753211 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..+..-.|+.++.....+-..++..+. +..|+
T Consensus 141 ~~~~~~~Y~asK~a~~~~~~~l~~el~--~~gi~ 172 (277)
T PRK05993 141 PMKYRGAYNASKFAIEGLSLTLRMELQ--GSGIH 172 (277)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHhh--hhCCE
Confidence 223223456665555555555554443 34454
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.9e-05 Score=64.18 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=62.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
||+++|+| +|.+|+.++.++...|+ ||.+-.++. +++++.....+.- .++.. ...+|.+.+|+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~-------eV~igs~r~-~~~~~a~a~~l~~-------~i~~~-~~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH-------EVIIGSSRG-PKALAAAAAALGP-------LITGG-SNEDAAALADV 63 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC-------eEEEecCCC-hhHHHHHHHhhcc-------ccccC-ChHHHHhcCCE
Confidence 57899999 79999999999999998 887776553 2333333332221 23332 46789999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
||.+.-+ +.+..+++.++..- .+.++|-.|||.
T Consensus 64 VvLAVP~----------------~a~~~v~~~l~~~~-~~KIvID~tnp~ 96 (211)
T COG2085 64 VVLAVPF----------------EAIPDVLAELRDAL-GGKIVIDATNPI 96 (211)
T ss_pred EEEeccH----------------HHHHhHHHHHHHHh-CCeEEEecCCCc
Confidence 9998521 22334455555432 345677789994
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.8e-06 Score=74.96 Aligned_cols=158 Identities=11% Similarity=0.036 Sum_probs=88.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--CC---CCcceEEeCChhhh-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FP---LLKGVVATTDAVEA- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~~---~~~~v~~~~~~~~a- 78 (320)
.++|+||||+|+||++++..|++.|. +|++++++. +++.....++.... .. ...++....+..++
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~-------~vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~ 86 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA-------HVVLAVRNL--DKGKAAAARITAATPGADVTLQELDLTSLASVRAAA 86 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHH
Confidence 46899999999999999999999886 788888863 33332222332110 00 01122221122222
Q ss_pred ------cCCCcEEEEeCCCCCCCC----CCHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhh-HHH-HH
Q 020875 79 ------CTGVNIAVMVGGFPRKEG----MERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTN-ALI-LK 142 (320)
Q Consensus 79 ------l~~aDvVi~~ag~~~~~~----~~r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~-~~~-~~ 142 (320)
+...|+||+.||....+. ......+..|+.. ++.+.+.+++.. ..++|++|+..... ... ..
T Consensus 87 ~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~~~~~~ 164 (306)
T PRK06197 87 DALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP--GSRVVTVSSGGHRIRAAIHFD 164 (306)
T ss_pred HHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC--CCEEEEECCHHHhccCCCCcc
Confidence 236899999998642211 1223346677666 666677766543 35777777543111 000 00
Q ss_pred HH--CCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 143 EF--APSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 143 ~~--~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.. ...+++...|+.+++-...+.+.+++.+.
T Consensus 165 ~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~ 197 (306)
T PRK06197 165 DLQWERRYNRVAAYGQSKLANLLFTYELQRRLA 197 (306)
T ss_pred ccCcccCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 00122223467777777777788888875
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=73.28 Aligned_cols=147 Identities=14% Similarity=0.122 Sum_probs=80.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCCh-------hhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA-------VEA 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~-------~~a 78 (320)
++|+|+||+|++|++++..|+++|+ +|++.+++. +.+......+.........++....+. .+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD-------RVVATARDT--ATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEH 74 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999886 789999864 222211111110000001111111111 122
Q ss_pred cCCCcEEEEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 79 CTGVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
+...|+|||+||...... .+..+.+..|+.....+.+. +++.. . .++|++|..... .+.
T Consensus 75 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~-~~iv~vsS~~~~---------~~~ 143 (275)
T PRK08263 75 FGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQR-S-GHIIQISSIGGI---------SAF 143 (275)
T ss_pred cCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-C-CEEEEEcChhhc---------CCC
Confidence 346799999999753211 12344677888776555554 44443 2 456666643211 122
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHc
Q 020875 149 PAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
|..-.|+.++.-...+...+++.+
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~la~e~ 167 (275)
T PRK08263 144 PMSGIYHASKWALEGMSEALAQEV 167 (275)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHh
Confidence 322245666554445555566654
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=71.15 Aligned_cols=156 Identities=14% Similarity=0.087 Sum_probs=85.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChh-
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV- 76 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~- 76 (320)
|+.+..+|+|+||+|+||++++..|+++|. ++++..++. .+.......++...... ...+++...+..
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 73 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGS-------LVVVNAKKR-AEEMNETLKMVKENGGEGIGVLADVSTREGCET 73 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCC-hHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHH
Confidence 344567999999999999999999999887 666554432 12222222222211100 011222111222
Q ss_pred ------hhcCCCcEEEEeCCCCCCCC---CCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 77 ------EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 77 ------~al~~aDvVi~~ag~~~~~~---~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+.+...|+|||+||...... .+. .+.+..|+.....+++.+.++-.+..++|++|+-..
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~--------- 144 (252)
T PRK06077 74 LAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG--------- 144 (252)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc---------
Confidence 22346899999998743211 122 234567776666666666654323346666664221
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
..+.++...++.++.....+...+++.++
T Consensus 145 ~~~~~~~~~Y~~sK~~~~~~~~~l~~~~~ 173 (252)
T PRK06077 145 IRPAYGLSIYGAMKAAVINLTKYLALELA 173 (252)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 12333333456666666667677777765
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.6e-06 Score=72.17 Aligned_cols=117 Identities=19% Similarity=0.117 Sum_probs=69.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++|+|+||+|++|.+++..|+++|. +|++++++. +++.....++...... ...++....+..+.+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-------EVIVVDICG--DDAAATAELVEAAGGKARARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999886 789999864 2333222233221100 011222222222222
Q ss_pred -----CCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcC
Q 020875 80 -----TGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE----QHAAPNCKVLVVAN 132 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~sn 132 (320)
..+|+|||++|..... ..+. .+.+..|+.....+.+.+. +.. ..+++++|+
T Consensus 77 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~ss 142 (251)
T PRK12826 77 GVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG--GGRIVLTSS 142 (251)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEEec
Confidence 3689999999764321 1222 3456777777777766653 332 245666664
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.4e-06 Score=73.29 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH-----HHHHHhcccCCCCcceEE-eCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-----VKMELVDAAFPLLKGVVA-TTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~-----~~~dl~~~~~~~~~~v~~-~~~~~~ 77 (320)
+.++++|+||+|.+|.+++..|+++|. +|++.++++. .+.. ...|+.+.. .+.. .....+
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~-------~v~~~~~~~~--~~~~~~~~~~~~D~~~~~-----~~~~~~~~~~~ 73 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGA-------NVVNADIHGG--DGQHENYQFVPTDVSSAE-----EVNHTVAEIIE 73 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCcc--ccccCceEEEEccCCCHH-----HHHHHHHHHHH
Confidence 456899999999999999999999987 7888888642 1111 112222211 0000 001122
Q ss_pred hcCCCcEEEEeCCCCCCC------------CCC---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHH
Q 020875 78 ACTGVNIAVMVGGFPRKE------------GME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALI 140 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~------------~~~---r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~ 140 (320)
.+...|++|++||..... ..+ ....+..|+.....+.+.+.++-. +...+|++|+-...
T Consensus 74 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---- 149 (266)
T PRK06171 74 KFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGL---- 149 (266)
T ss_pred HcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcccccc----
Confidence 234679999999864210 112 233567787777777666654321 23466777654321
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.+..-.|+.++.-...+-+.+++.+. +..|+..
T Consensus 150 -----~~~~~~~~Y~~sK~a~~~l~~~la~e~~--~~gi~v~ 184 (266)
T PRK06171 150 -----EGSEGQSCYAATKAALNSFTRSWAKELG--KHNIRVV 184 (266)
T ss_pred -----CCCCCCchhHHHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence 1122222456665544556666777664 4556643
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.5e-05 Score=71.63 Aligned_cols=104 Identities=16% Similarity=0.269 Sum_probs=64.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHH-------Hh---c-ccC------CCCcc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-------LV---D-AAF------PLLKG 68 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~d-------l~---~-~~~------~~~~~ 68 (320)
.||+|+| +|.+|..++..|+..|+ +|+++|+++ +.++..... +. + ... .....
T Consensus 4 ~~I~ViG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~ 73 (291)
T PRK06035 4 KVIGVVG-SGVMGQGIAQVFARTGY-------DVTIVDVSE--EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMAR 73 (291)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhC
Confidence 5899999 69999999999999887 899999874 333211111 11 0 000 00123
Q ss_pred eEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 69 v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
+..+++. +++++||+||.+... +.+..+++.+.+.+++++++++ +||....
T Consensus 74 i~~~~~~-~~~~~aDlVieav~e--------------~~~~k~~~~~~l~~~~~~~~il--~S~tsg~ 124 (291)
T PRK06035 74 IRTSTSY-ESLSDADFIVEAVPE--------------KLDLKRKVFAELERNVSPETII--ASNTSGI 124 (291)
T ss_pred cEeeCCH-HHhCCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEE--EEcCCCC
Confidence 5555565 678999999998521 1233456666777776566543 4554443
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-05 Score=70.92 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc-hhHHHHHHHhcccCCCCcceEE-eCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-ALNGVKMELVDAAFPLLKGVVA-TTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~-~~~~~~~dl~~~~~~~~~~v~~-~~~~~~al~~ 81 (320)
+.++++||||+|.+|.+++..|++.|. +|++.++++... .+.....|+.+.. .+.. .....+.+..
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~-------~Vi~~~r~~~~~~~~~~~~~D~~~~~-----~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-------NVINFDIKEPSYNDVDYFKVDVSNKE-----QVIKGIDYVISKYGR 72 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCccccCceEEEEccCCCHH-----HHHHHHHHHHHHcCC
Confidence 447899999999999999999999887 788888764211 1111122333221 0000 0011222346
Q ss_pred CcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE
Q 020875 82 VNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSIPAKNI 153 (320)
Q Consensus 82 aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i 153 (320)
.|++|+.||..... ..+ ....+..|+.....+.+.+.++- ...+++|++|+-... ...+..-.
T Consensus 73 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~~~~~ 143 (258)
T PRK06398 73 IDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSF---------AVTRNAAA 143 (258)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhc---------cCCCCCch
Confidence 89999999874321 112 23446778776666655544321 124667777653211 12233335
Q ss_pred EEeehhhHHHHHHHHHHHcC
Q 020875 154 TCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 154 ~~~t~ld~~r~~~~~a~~l~ 173 (320)
|+.++.....+-+.++..++
T Consensus 144 Y~~sKaal~~~~~~la~e~~ 163 (258)
T PRK06398 144 YVTSKHAVLGLTRSIAVDYA 163 (258)
T ss_pred hhhhHHHHHHHHHHHHHHhC
Confidence 77777666677777888775
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3e-06 Score=75.84 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cC-CCCcceEE-eCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF-PLLKGVVA-TTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~-~~~~~~al- 79 (320)
.++||+|+||+|++|+.++..|+.+|+ +|+++.++. +++... +.+. .. ....++.. ..++.+++
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~-------~V~~~~R~~--~~~~~~---~~~~~~~~~~~~Dl~d~~~~l~~~~~ 83 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF-------AVKAGVRDV--DKAKTS---LPQDPSLQIVRADVTEGSDKLVEAIG 83 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC-------EEEEEecCH--HHHHHh---cccCCceEEEEeeCCCCHHHHHHHhh
Confidence 468999999999999999999999886 787776653 222111 1110 00 01112221 12345667
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
.++|+||+++|.....+. .+....|......+++.+++.+ . .++|++|.
T Consensus 84 ~~~d~vi~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~-~-~~iV~iSS 132 (251)
T PLN00141 84 DDSDAVICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAG-V-TRFILVSS 132 (251)
T ss_pred cCCCEEEECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcC-C-CEEEEEcc
Confidence 689999998876432111 1123456667788888888764 2 35666553
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-05 Score=69.07 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=88.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccch---hHHHHHHHhcccCCCCcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA---LNGVKMELVDAAFPLLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~---~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (320)
|+.+.+++.|+||+|++|++++..|++.|+ +|++.++++.... +.....|+.+. .....+
T Consensus 1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~-------~v~~~~r~~~~~~~~~~~~~~~D~~~~----------~~~~~~ 63 (235)
T PRK06550 1 QEFMTKTVLITGAASGIGLAQARAFLAQGA-------QVYGVDKQDKPDLSGNFHFLQLDLSDD----------LEPLFD 63 (235)
T ss_pred CCCCCCEEEEcCCCchHHHHHHHHHHHCCC-------EEEEEeCCcccccCCcEEEEECChHHH----------HHHHHH
Confidence 566667999999999999999999999887 7888888642110 00001111111 012233
Q ss_pred hcCCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 78 ACTGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
.+...|+||+.+|.... + ..+ ..+.+..|+.....+.+.+.... .+..+++++|..... .+.
T Consensus 64 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~ 134 (235)
T PRK06550 64 WVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASF---------VAG 134 (235)
T ss_pred hhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc---------cCC
Confidence 45678999999986421 1 112 23456778777666666654321 123466666643211 112
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+..-.|+.++.-...+...+++.++ +..|+..
T Consensus 135 ~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~ 166 (235)
T PRK06550 135 GGGAAYTASKHALAGFTKQLALDYA--KDGIQVF 166 (235)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence 2222466666555566667777764 3556643
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-05 Score=69.29 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=70.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE-ecCCccchhHHHHHHHhcccCC---CCcceEEeCChh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV 76 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~-D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~ 76 (320)
|..++++|+|+||+|++|++++..|++.|+ ++++. +++. +++......+...... ...++....++.
T Consensus 1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~-------~v~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 71 (247)
T PRK05565 1 MKLMGKVAIVTGASGGIGRAIAELLAKEGA-------KVVIAYDINE--EAAQELLEEIKEEGGDAIAVKADVSSEEDVE 71 (247)
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 555667999999999999999999998886 67777 8763 2332222222221100 011222111222
Q ss_pred hhc-------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCc
Q 020875 77 EAC-------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANP 133 (320)
Q Consensus 77 ~al-------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP 133 (320)
+.+ .+.|+||+.+|...... .+ ..+.+..|......+.+.+..... ....+|++|+.
T Consensus 72 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 143 (247)
T PRK05565 72 NLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSI 143 (247)
T ss_pred HHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCH
Confidence 222 37899999998752111 12 234566787776666655544311 12456666654
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.1e-06 Score=71.39 Aligned_cols=121 Identities=14% Similarity=0.085 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-CcceEEeCChhhh---
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEA--- 78 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a--- 78 (320)
.+.++|+|+||+|++|++++..|+++|. +|+++++++ ++......++....... ..++....++.++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGA-------RVALIGRGA--APLSQTLPGVPADALRIGGIDLVDPQAARRAVDE 75 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCC-------eEEEEeCCh--HhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHH
Confidence 3457999999999999999999999887 799999864 22222222232211110 1122111122222
Q ss_pred ----cCCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcC
Q 020875 79 ----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVAN 132 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~sn 132 (320)
+..+|+||+.+|..... ..+. .+.+..|......+++.+.+.- .+..+++++|+
T Consensus 76 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (239)
T PRK12828 76 VNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA 141 (239)
T ss_pred HHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 33689999998864211 1122 2345677777777766664321 12346676665
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.6e-05 Score=69.18 Aligned_cols=158 Identities=14% Similarity=0.094 Sum_probs=88.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChh-
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAV- 76 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~- 76 (320)
|..+.++|+||||+|.+|.+++..|++.|+ +|+++++++. +.+. ..+..... ....++....+..
T Consensus 1 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~-------~vi~~~r~~~-~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (248)
T TIGR01832 1 FSLEGKVALVTGANTGLGQGIAVGLAEAGA-------DIVGAGRSEP-SETQ---QQVEALGRRFLSLTADLSDIEAIKA 69 (248)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCchH-HHHH---HHHHhcCCceEEEECCCCCHHHHHH
Confidence 445567999999999999999999999987 7899987531 1111 11211110 0111222211222
Q ss_pred ------hhcCCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCcchhhHHHH
Q 020875 77 ------EACTGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 77 ------~al~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP~~~~~~~~ 141 (320)
+.+...|++|+.+|...... . ...+.+..|+.....+.+.+.+. .....++|++|+-...
T Consensus 70 ~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~----- 144 (248)
T TIGR01832 70 LVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSF----- 144 (248)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhc-----
Confidence 22346899999998743211 1 22345677877666666665432 1123567776642210
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+....|+.++.-...+.+.+++.+. +..|+
T Consensus 145 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~ 177 (248)
T TIGR01832 145 ----QGGIRVPSYTASKHGVAGLTKLLANEWA--AKGIN 177 (248)
T ss_pred ----cCCCCCchhHHHHHHHHHHHHHHHHHhC--ccCcE
Confidence 1122222466666555566677777764 34455
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=72.59 Aligned_cols=157 Identities=13% Similarity=0.144 Sum_probs=88.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
+.++|+|+||+|.||++++..|+..|+ +|++++++. +.+.....++...... ...++....+..++
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-------NVAVASRSQ--EKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 346999999999999999999999887 799999864 3333322233221100 01122222222222
Q ss_pred -----cCCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 -----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+...|++|+.+|..... ..+. .+.+..|+.....+.+.+.+.- .++..++++|+.... .
T Consensus 79 ~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~---------~ 149 (264)
T PRK07576 79 QIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAF---------V 149 (264)
T ss_pred HHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhc---------c
Confidence 24579999998753211 1122 2346678777777776665431 123567777765321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+.+..-.|+.++.-...+-..++..+. +..++
T Consensus 150 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~ 181 (264)
T PRK07576 150 PMPMQAHVCAAKAGVDMLTRTLALEWG--PEGIR 181 (264)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence 122222456666555666666776654 33444
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-05 Score=69.51 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=89.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-----CCcceEEeCCh------
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTDA------ 75 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-----~~~~v~~~~~~------ 75 (320)
||+|+||+|++|.+++..|+.+|. +|++.+++. .+.++....++.+.... ...++....+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-------~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-------KVFLTDIND-AAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQ 72 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCc-chHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHH
Confidence 589999999999999999999886 899999862 13333333333221100 00122111112
Q ss_pred -hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 76 -VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 76 -~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
.+.+...|+||+.+|...... .+ ....+..|+. .++.+.+.+++.. ..+++++|+....
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~ii~~ss~~~~-------- 142 (251)
T PRK07069 73 AADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ--PASIVNISSVAAF-------- 142 (251)
T ss_pred HHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CcEEEEecChhhc--------
Confidence 122356899999998753211 12 2234567776 7777888887653 3467777654311
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+.+.+++.+.-....++.
T Consensus 143 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v 178 (251)
T PRK07069 143 -KAEPDYTAYNASKAAVASLTKSIALDCARRGLDVRC 178 (251)
T ss_pred -cCCCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEE
Confidence 112222246666665556666777776544344553
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.4e-06 Score=75.55 Aligned_cols=114 Identities=15% Similarity=0.136 Sum_probs=68.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC----- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al----- 79 (320)
.++|+||||+|++|.+++..|++.|+ +|++.++++ +++..... ........++....+..+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~l~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~ 70 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-------TVYGAARRV--DKMEDLAS---LGVHPLSLDVTDEASIKAAVDTIIA 70 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHh---CCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999887 788888864 33321110 00001112222222233333
Q ss_pred --CCCcEEEEeCCCCCCC---C---CCHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcC
Q 020875 80 --TGVNIAVMVGGFPRKE---G---MERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 80 --~~aDvVi~~ag~~~~~---~---~~r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~sn 132 (320)
.+.|++|+.||..... . ++....+..|+.. ++.+++.+++.. ..++|++|+
T Consensus 71 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~g~iv~isS 133 (273)
T PRK06182 71 EEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR--SGRIINISS 133 (273)
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcc
Confidence 3789999999875321 1 1233456677655 556666666653 246777765
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4e-05 Score=70.30 Aligned_cols=151 Identities=16% Similarity=0.120 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
+.++|+|+||+|.+|.+++..|+++|. +|++++++. ++++....++...... ...++....+..++
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-------~Vi~~~R~~--~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 109 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-------TVVAVARRE--DLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVA 109 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 346899999999999999999999886 899999864 3444333333211100 11122222222233
Q ss_pred -----cCCCcEEEEeCCCCCCCC--C---CH---HHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKEG--M---ER---KDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~--~---~r---~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
+.+.|++|++||...... . +. ...+..|......+ .+.+++.+ ...+|++|+- ..
T Consensus 110 ~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~-~~----- 181 (293)
T PRK05866 110 DVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERG--DGHIINVATW-GV----- 181 (293)
T ss_pred HHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECCh-hh-----
Confidence 337899999998753211 1 11 23456666554444 44444443 3566666642 11
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
+....|..-.|+.++.....+...++..+.
T Consensus 182 --~~~~~p~~~~Y~asKaal~~l~~~la~e~~ 211 (293)
T PRK05866 182 --LSEASPLFSVYNASKAALSAVSRVIETEWG 211 (293)
T ss_pred --cCCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 001123222466666655566666766664
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.5e-05 Score=73.47 Aligned_cols=106 Identities=22% Similarity=0.317 Sum_probs=67.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--------------CcceEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--------------LKGVVA 71 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v~~ 71 (320)
|||+|+| .|.+|..++..|++.|+ +|.++|+++ ++++ ++.....+. ...++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-------~V~~~d~~~--~~v~----~l~~g~~~~~e~~l~~~~~~~~~~g~l~~ 66 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-------EVTGVDIDQ--EKVD----KLNKGKSPIYEPGLDELLAKALAAGRLRA 66 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-------eEEEEECCH--HHHH----HhhcCCCCCCCCCHHHHHHHhhhcCCeEE
Confidence 5899999 79999999999999987 899999874 3332 222211110 123666
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
+++..++++++|+||++...+...... .+...+...++.+.++..++..++..|
T Consensus 67 ~~~~~~~~~~advvii~vpt~~~~~~~------~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 67 TTDYEDAIRDADVIIICVPTPLKEDGS------PDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred ECCHHHHHhhCCEEEEEeCCCCCCCCC------cChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 777778899999999998776532211 122334444455554432444444444
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=71.79 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CCCCcceEEeCChhh-----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FPLLKGVVATTDAVE----- 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~~~----- 77 (320)
+.++++|+||+|++|++++..|+++|+ +|+++++++ +.+.....++.+.. .....++....++.+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA-------RVHVCDVSE--AALAATAARLPGAKVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHH
Confidence 347999999999999999999999887 799999864 22222211221110 000111211111222
Q ss_pred --hcCCCcEEEEeCCCCCCCC----CCH---HHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 78 --ACTGVNIAVMVGGFPRKEG----MER---KDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 78 --al~~aDvVi~~ag~~~~~~----~~r---~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.+.++|+|||.+|...... .+. .+.+..|......+.+.+.+. .....++++.|.-.. .
T Consensus 81 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~---------~ 151 (264)
T PRK12829 81 VERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAG---------R 151 (264)
T ss_pred HHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccc---------c
Confidence 2357899999998652111 122 345667777766666655332 112134555553211 1
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.+++....++.++.....+...+++.+
T Consensus 152 ~~~~~~~~y~~~K~a~~~~~~~l~~~~ 178 (264)
T PRK12829 152 LGYPGRTPYAASKWAVVGLVKSLAIEL 178 (264)
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 233433345666555555666666665
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.5e-05 Score=68.67 Aligned_cols=151 Identities=18% Similarity=0.188 Sum_probs=83.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh-----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE----- 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~----- 77 (320)
++|+||||+|++|++++..|++.|. +|++++++.. +.......++...... ...+++...+..+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~-------~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF-------DLAINDRPDD-EELAATQQELRALGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecCch-hHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4799999999999999999999886 7899987532 2222222222211111 0112222111111
Q ss_pred --hcCCCcEEEEeCCCCCCC-----CCC---HHHHHHhhHHHHHHHHHHHhhh----cC-C---CeEEEEEcCcchhhHH
Q 020875 78 --ACTGVNIAVMVGGFPRKE-----GME---RKDVMSKNVSIYKAQASALEQH----AA-P---NCKVLVVANPANTNAL 139 (320)
Q Consensus 78 --al~~aDvVi~~ag~~~~~-----~~~---r~~~~~~n~~~~~~i~~~i~~~----~~-~---~~~viv~snP~~~~~~ 139 (320)
.+...|+|||++|..... ..+ ..+.+..|+.....+.+.+.++ .. . ...++++|+....
T Consensus 75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~--- 151 (256)
T PRK12745 75 QAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAI--- 151 (256)
T ss_pred HHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhc---
Confidence 224689999999874311 112 2345677887777776665443 11 1 2346666643211
Q ss_pred HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+..-.|+.++.....+-..+++.++
T Consensus 152 ------~~~~~~~~Y~~sK~a~~~~~~~l~~~~~ 179 (256)
T PRK12745 152 ------MVSPNRGEYCISKAGLSMAAQLFAARLA 179 (256)
T ss_pred ------cCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 1223333566666655566666666543
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=71.85 Aligned_cols=146 Identities=16% Similarity=0.087 Sum_probs=81.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++||||+|++|++++..|+++|. +|+++|+++. ......++...... ...++....+..+.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~-------~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA-------RVVLVDRSEL---VHEVAAELRAAGGEALALTADLETYAGAQAAMAA 77 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCchH---HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHH
Confidence 36899999999999999999999987 7999998631 22222222211100 01112111111222
Q ss_pred ----cCCCcEEEEeCCCCC--CC--CCCH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 ----CTGVNIAVMVGGFPR--KE--GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~--~~--~~~r---~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+...|++|+.||... .+ ..+. ...+..|+.. ++.+.+.+++.. ..++|++|+...
T Consensus 78 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~-------- 147 (260)
T PRK12823 78 AVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG--GGAIVNVSSIAT-------- 147 (260)
T ss_pred HHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEEcCccc--------
Confidence 346899999998532 11 1122 2334556543 345555555543 246777765321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
+ + +..-.|+.++.-...+.+.+++.+.
T Consensus 148 ~--~-~~~~~Y~~sK~a~~~~~~~la~e~~ 174 (260)
T PRK12823 148 R--G-INRVPYSAAKGGVNALTASLAFEYA 174 (260)
T ss_pred c--C-CCCCccHHHHHHHHHHHHHHHHHhc
Confidence 0 1 1112477777766677777887764
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.2e-05 Score=67.94 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=84.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc----CC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC----TG 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al----~~ 81 (320)
||+.|+||+|.+|++++..|++.|. +|+++++++ ++++....++. ......++....+..+++ +.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~ 69 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH-------KVTLVGARR--DDLEVAAKELD--VDAIVCDNTDPASLEEARGLFPHH 69 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhcc--CcEEecCCCCHHHHHHHHHHHhhc
Confidence 5899999999999999999999886 789998863 33332222221 001112222222232222 25
Q ss_pred CcEEEEeCCCCCC---C--------CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCC
Q 020875 82 VNIAVMVGGFPRK---E--------GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (320)
Q Consensus 82 aDvVi~~ag~~~~---~--------~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~ 150 (320)
.|++|+.+|.... + .++....+..|+.....+.+.+...-.+.+.+|+++... .+.
T Consensus 70 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~-------------~~~ 136 (223)
T PRK05884 70 LDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN-------------PPA 136 (223)
T ss_pred CcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC-------------CCC
Confidence 8999999874210 0 011234567777666666666554321235677776422 111
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.-.|+.++---..+-+.+++.+. +..|+
T Consensus 137 ~~~Y~asKaal~~~~~~la~e~~--~~gI~ 164 (223)
T PRK05884 137 GSAEAAIKAALSNWTAGQAAVFG--TRGIT 164 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence 12466666666667677777765 34555
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.7e-05 Score=70.99 Aligned_cols=149 Identities=19% Similarity=0.214 Sum_probs=84.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C-CCCcceEEeCChhhhc---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEAC--- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~al--- 79 (320)
+++|+||||+|.+|.+++..|++.|. +|+++|++. ++++....++.... . ....+++...+..+++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-------TLGLVARRT--DALQAFAARLPKAARVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHH
Confidence 36899999999999999999999886 799999863 33433222222110 0 0112222222232322
Q ss_pred ----CCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHH----HHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 ----TGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQAS----ALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 ----~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~----~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|++|+.+|...... .+ ....+..|+.....+.+ .+++.. ...+|++|+-...
T Consensus 73 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~--~~~iv~isS~~~~-------- 142 (257)
T PRK07024 73 IAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR--RGTLVGIASVAGV-------- 142 (257)
T ss_pred HHhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC--CCEEEEEechhhc--------
Confidence 23699999998743211 12 23456677766655444 555543 3566766643211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|..-.|+.++.....+-..++..+.
T Consensus 143 -~~~~~~~~Y~asK~a~~~~~~~l~~e~~ 170 (257)
T PRK07024 143 -RGLPGAGAYSASKAAAIKYLESLRVELR 170 (257)
T ss_pred -CCCCCCcchHHHHHHHHHHHHHHHHHhh
Confidence 1233333567776666666666666554
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.8e-05 Score=67.42 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=85.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.+++.|+||+|++|++++..|+.+|. ++++.+.+. .+.++....++.+.... ...++....+..+++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA-------KVVINYNSS-KEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-------EEEEEcCCc-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999886 666654432 23333333333322110 011222222222233
Q ss_pred -----CCCcEEEEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 80 -----TGVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
...|+|||+||...... ....+.+..|+.....+.+.+..+- ....+++++|+.... .
T Consensus 78 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~ 148 (247)
T PRK12935 78 AVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQ---------A 148 (247)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhc---------C
Confidence 34799999998743211 1234567788887777777766531 123467777653211 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+.+....|+.++.....+-..+++.+. +..++..
T Consensus 149 ~~~~~~~Y~~sK~a~~~~~~~l~~~~~--~~~i~v~ 182 (247)
T PRK12935 149 GGFGQTNYSAAKAGMLGFTKSLALELA--KTNVTVN 182 (247)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHH--HcCcEEE
Confidence 222223456555443344444555542 3345543
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.1e-05 Score=68.43 Aligned_cols=158 Identities=14% Similarity=0.067 Sum_probs=86.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA 78 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a 78 (320)
+.+.++++||||+|.+|.+++..|++.|. .+++.++++. .. ....++...... ...++....+..+.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~-------~v~~~~r~~~--~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 73 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGA-------IPVIFGRSAP--DD-EFAEELRALQPRAEFVQVDLTDDAQCRDA 73 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCC-------cEEEEcCChh--hH-HHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 33456999999999999999999999886 6888887642 22 122233221111 11222222222333
Q ss_pred c-------CCCcEEEEeCCCCCCCC-----CCHHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcchhhHHHHHHHC
Q 020875 79 C-------TGVNIAVMVGGFPRKEG-----MERKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 79 l-------~~aDvVi~~ag~~~~~~-----~~r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~~~~~~~~~~~ 145 (320)
+ ...|+||+++|...... ++..+.+..|+.....+.+.+.++-. ....++++|.-...
T Consensus 74 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~--------- 144 (258)
T PRK08628 74 VEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTAL--------- 144 (258)
T ss_pred HHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhc---------
Confidence 3 35799999998643211 11234567787776666666554321 12456666542211
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+...-|+.++.-...+.+.+++.+. +..|+
T Consensus 145 ~~~~~~~~Y~~sK~a~~~~~~~l~~e~~--~~~i~ 177 (258)
T PRK08628 145 TGQGGTSGYAAAKGAQLALTREWAVALA--KDGVR 177 (258)
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHh--hcCeE
Confidence 1122222456665555556666666554 34454
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-05 Score=70.51 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhh----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEA---- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a---- 78 (320)
..++++||||+|.+|.+++..|++.|. +|++.+++. .+.++ ++.+... ....++....+..++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~----~l~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA-------KVAVLYNSA-ENEAK----ELREKGVFTIKCDVGNRDQVKKSKEVV 73 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCc-HHHHH----HHHhCCCeEEEecCCCHHHHHHHHHHH
Confidence 347899999999999999999999886 777776542 11111 1211110 011122111122222
Q ss_pred ---cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 79 ---CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 79 ---l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
+...|+||+++|..... ..+ ....+..|+.. ++.+++.+++.. .+.+|++|+.... .
T Consensus 74 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~g~iv~isS~~~~--------~ 143 (255)
T PRK06463 74 EKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK--NGAIVNIASNAGI--------G 143 (255)
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHHhC--------C
Confidence 34689999999874321 112 22356677766 466666665432 3567777753211 0
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...+..-.|+.++.-...+-+.+++.+. +..|+.
T Consensus 144 ~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~~i~v 177 (255)
T PRK06463 144 TAAEGTTFYAITKAGIIILTRRLAFELG--KYGIRV 177 (255)
T ss_pred CCCCCccHhHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1111112467666666666666777654 455663
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-05 Score=70.79 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=67.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~a 78 (320)
|..+..+|.|+||+|++|++++..|++.|. +|++.++++ +.+.....++.+... ....++....+..+.
T Consensus 1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (238)
T PRK05786 1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGA-------QVCINSRNE--NKLKRMKKTLSKYGNIHYVVGDVSSTESARNV 71 (238)
T ss_pred CCcCCcEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEECCCCCHHHHHHH
Confidence 555567999999999999999999999887 899999864 333222222222110 011222222222222
Q ss_pred -------cCCCcEEEEeCCCCCCCC-CCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 79 -------CTGVNIAVMVGGFPRKEG-MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 79 -------l~~aDvVi~~ag~~~~~~-~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+...|.+|+++|...... .+. ...+..|+.....+++.+.+.-.++..+|++|+.
T Consensus 72 ~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 72 IEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred HHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 234699999887532111 111 2234555555444444444332123456777754
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.5e-05 Score=68.78 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=88.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++|.|+||+|++|++++..|++.|. +|++++++++ ..+......+...... ...++....+..+.+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~-------~V~l~~r~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA-------DIAIVYLDEH-EDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcc-hHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999999886 8899988642 1222222222211100 111221111222222
Q ss_pred -----CCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 80 -----TGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
...|+||+.||.... + ..+ ..+.+..|+.....+++.+.+.-.+...+|++|+-... .+
T Consensus 118 i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~---------~~ 188 (290)
T PRK06701 118 TVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGY---------EG 188 (290)
T ss_pred HHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEeccccc---------CC
Confidence 357999999986421 1 112 23467888888888888887642234567777653211 11
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+..--|+.++.-...+-..+++.+. +..|+..
T Consensus 189 ~~~~~~Y~~sK~a~~~l~~~la~~~~--~~gIrv~ 221 (290)
T PRK06701 189 NETLIDYSATKGAIHAFTRSLAQSLV--QKGIRVN 221 (290)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence 12111244444433455555666654 3456543
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-05 Score=69.65 Aligned_cols=156 Identities=10% Similarity=0.089 Sum_probs=87.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
+.+++.||||+|.+|.+++..|++.|. +|+++++++. +.+.. .+...... ...++....+..+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-------~vv~~~~~~~-~~~~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-------DIVGVGVAEA-PETQA---QVEALGRKFHFITADLIQQKDIDSIVS 75 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCchH-HHHHH---HHHHcCCeEEEEEeCCCCHHHHHHHHH
Confidence 446899999999999999999999987 7888887531 22211 12111100 11122222222222
Q ss_pred -----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+...|++|+.||...... .+ ....+..|+.....+.+. +.+.. ..+++|++|+....
T Consensus 76 ~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~-~~g~ii~isS~~~~------- 147 (251)
T PRK12481 76 QAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQG-NGGKIINIASMLSF------- 147 (251)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcC-CCCEEEEeCChhhc-------
Confidence 345799999998743211 12 234566776655544444 43332 23577777754321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.+..-.|+.++.-...+-+.+|..+. +..|+..
T Consensus 148 --~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~girvn 182 (251)
T PRK12481 148 --QGGIRVPSYTASKSAVMGLTRALATELS--QYNINVN 182 (251)
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHHHh--hcCeEEE
Confidence 1122222567777666677777777764 4456533
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.9e-05 Score=69.71 Aligned_cols=149 Identities=14% Similarity=0.093 Sum_probs=82.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.+.++||||+|++|++++..|+.+|. +|++.|+++ +.++....++...... ...++....+..+.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~-------~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA-------RVVLGDVDK--PGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999999999987 799999864 3344333333321100 11222222222222
Q ss_pred ----cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 79 ----CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+...|++|+.||..... ..+ ....+..|+.....+.+.+. +.+ ..+.+|++|+-...
T Consensus 77 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~-~~g~iv~isS~~~~-------- 147 (275)
T PRK05876 77 AFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQG-TGGHVVFTASFAGL-------- 147 (275)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCCEEEEeCChhhc--------
Confidence 23579999999874311 122 23456777776666655543 332 23567777653211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.+.|..-.|+.++.-...+-..++..+
T Consensus 148 -~~~~~~~~Y~asK~a~~~~~~~l~~e~ 174 (275)
T PRK05876 148 -VPNAGLGAYGVAKYGVVGLAETLAREV 174 (275)
T ss_pred -cCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 122222245656554444455555554
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.7e-05 Score=78.97 Aligned_cols=146 Identities=17% Similarity=0.242 Sum_probs=95.0
Q ss_pred CEEEEEcCCChhHHHHHHHHH-hcCcCCCCCCeEEEEEecCCccchhHH---HHHHHhcc-----c-C-----CCCcceE
Q 020875 6 VRVLVTGAAGQIGYALVPMIA-RGVMLGTDQPVILHMLDIPPAAEALNG---VKMELVDA-----A-F-----PLLKGVV 70 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~-~~~~~~~~~~~ev~l~D~~~~~~~~~~---~~~dl~~~-----~-~-----~~~~~v~ 70 (320)
.||+|+| +|.+|..++..++ ..|+ +|+|+|.++ +.+.. ...+..+. . . ....+++
T Consensus 310 ~~v~ViG-aG~mG~giA~~~a~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 379 (708)
T PRK11154 310 NKVGVLG-GGLMGGGIAYVTATKAGL-------PVRIKDINP--QGINHALKYSWDLLDKKVKRRHLKPSERDKQMALIS 379 (708)
T ss_pred cEEEEEC-CchhhHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEE
Confidence 6999999 5999999999988 7787 899999974 22211 11111110 0 0 0135688
Q ss_pred EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh-hHHHHHHHCCCC-
Q 020875 71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALILKEFAPSI- 148 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~-~~~~~~~~~~~~- 148 (320)
.++++ +++++||+||-+. -+|.+.-+++...++++++|++ |+.||.+.+ ++.+... ...
T Consensus 380 ~~~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~--~~~p 440 (708)
T PRK11154 380 GTTDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAA--AARP 440 (708)
T ss_pred EeCCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHh--cCcc
Confidence 88776 7899999999874 2345677899999999987775 567887765 3444332 122
Q ss_pred ----------CCC--c---EE--EeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 149 ----------PAK--N---IT--CLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 149 ----------~~~--~---i~--~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
|++ + |+ -.|.-++......+++.+|..|.-++
T Consensus 441 ~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~ 489 (708)
T PRK11154 441 EQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVR 489 (708)
T ss_pred cceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 222 1 22 23566665666667788887665444
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.5e-05 Score=68.30 Aligned_cols=157 Identities=16% Similarity=0.099 Sum_probs=87.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++|+||+|.+|++++..|+++|+ +++++++++ +++.....++...... ...++....+..+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-------TVAFNDGLA--AEARELAAALEAAGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 47999999999999999999999887 788888764 3333333333221110 11122222222222
Q ss_pred ----cCCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 ----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+.+.|+||+++|..... ..+. ...+..|......+.+.+.++.. ...++|++|+.... .
T Consensus 78 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---------~ 148 (250)
T PRK12939 78 AAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTAL---------W 148 (250)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhc---------c
Confidence 25789999999874321 1122 23456777777777666654311 23577777753211 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.+..-.++.++.-..++.+.+++.+.- ..|+.
T Consensus 149 ~~~~~~~y~~sK~~~~~~~~~l~~~~~~--~~i~v 181 (250)
T PRK12939 149 GAPKLGAYVASKGAVIGMTRSLARELGG--RGITV 181 (250)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhh--hCEEE
Confidence 1221123455555555666666666542 34553
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.6e-06 Score=72.14 Aligned_cols=159 Identities=9% Similarity=0.045 Sum_probs=84.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCC---
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTG--- 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~--- 81 (320)
++|+|+||+|++|++++..|+++|. +|++++++++ +.+....... .... ....++....+..+.++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~-------~V~~~~r~~~-~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT-------HVISISRTEN-KELTKLAEQY-NSNLTFHSLDLQDVHELETNFNEILS 72 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC-------EEEEEeCCch-HHHHHHHhcc-CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999886 7888988642 2222111100 0000 011222222222222221
Q ss_pred --------CcEEEEeCCCCCC---C-CCCHH---HHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 82 --------VNIAVMVGGFPRK---E-GMERK---DVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 82 --------aDvVi~~ag~~~~---~-~~~r~---~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
.+++|+.+|.... . ..+.. ..+..|+.. ++.+.+.+++.. ...+++++|+...
T Consensus 73 ~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~~iv~~sS~~~------- 144 (251)
T PRK06924 73 SIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWK-VDKRVINISSGAA------- 144 (251)
T ss_pred hcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccC-CCceEEEecchhh-------
Confidence 1267888876421 1 11222 234445544 445555555432 2346677665321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
...++....|+.++.-...+.+.+|..++..+..|+...
T Consensus 145 --~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~ 183 (251)
T PRK06924 145 --KNPYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVA 183 (251)
T ss_pred --cCCCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 122333335677666666777777877765556676544
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.5e-05 Score=69.68 Aligned_cols=152 Identities=11% Similarity=0.116 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
+.++|+|+||+|++|++++..|++.|. .|+++++++ +.+.....++...... ...++....+..+++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-------HVLVNGRNA--ATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 457999999999999999999999886 799999864 3333333333221110 111222222222222
Q ss_pred ------CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHC
Q 020875 80 ------TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
...|+||+.+|..... ..+ ..+.+..|+.....+.+.+.+.- .....+|++|+....
T Consensus 81 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~--------- 151 (256)
T PRK06124 81 RIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQ--------- 151 (256)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhc---------
Confidence 3469999999864321 112 23456777776666665554321 023567777754321
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+..-.++.++.....+...+++.++
T Consensus 152 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 179 (256)
T PRK06124 152 VARAGDAVYPAAKQGLTGLMRALAAEFG 179 (256)
T ss_pred cCCCCccHhHHHHHHHHHHHHHHHHHHH
Confidence 1122112345554444444455566554
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.7e-05 Score=69.22 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=67.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeC-------Ch
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT-------DA 75 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~-------~~ 75 (320)
++|+|+||+|++|++++..|+++|+ +|++++++. +..+....++...... ...++.... ..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-------NVVVNDLGE--AGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAA 72 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 4799999999999999999999887 899999864 2222222222211111 011222211 22
Q ss_pred hhhcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcC
Q 020875 76 VEACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVAN 132 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~sn 132 (320)
.+.+.+.|+|||.++..... ..+ ..+.+..|......+.+.+ ++.. ..+++++|+
T Consensus 73 ~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~~v~~ss 137 (255)
T TIGR01963 73 AAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG--WGRIINIAS 137 (255)
T ss_pred HHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEEcc
Confidence 33456789999999864321 111 2234556777666666555 4432 235666664
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.4e-05 Score=69.12 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=86.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
+.++++|+||+|++|++++..|+++|. +|+++++++. .......+...... ...++....+..+.
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-------~Vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-------NLILLDISPE---IEKLADELCGRGHRCTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEecCCHH---HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 457999999999999999999999887 7999998641 22122222111101 01122211122222
Q ss_pred -----cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHC
Q 020875 79 -----CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
+...|+||+.+|..... ..+ ..+.+..|+.....+.+.+.++. .....++++|+.... .
T Consensus 75 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~-------~- 146 (263)
T PRK08226 75 RAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGD-------M- 146 (263)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhc-------c-
Confidence 34679999999864211 111 23356778877776666655431 123467777653210 0
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
...+..-.|+.++.-...+-..+++.+. +..++
T Consensus 147 ~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~~i~ 179 (263)
T PRK08226 147 VADPGETAYALTKAAIVGLTKSLAVEYA--QSGIR 179 (263)
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHhc--ccCcE
Confidence 1112222466666555566667777764 33454
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.2e-05 Score=71.08 Aligned_cols=149 Identities=20% Similarity=0.153 Sum_probs=84.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc---CC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---TG 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al---~~ 81 (320)
.++++|+||+|++|.+++..|++.|+ +|++++++. +++......+. .. ....++....+..+++ ..
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~-~~-~~~~D~~~~~~v~~~~~~~~~ 77 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA-------RVVAAARNA--AALDRLAGETG-CE-PLRLDVGDDAAIRAALAAAGA 77 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhC-Ce-EEEecCCCHHHHHHHHHHhCC
Confidence 46999999999999999999999886 799999863 23322111110 00 0011221111223333 35
Q ss_pred CcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcC---CCeEEEEEcCcchhhHHHHHHHCCCCCCCc
Q 020875 82 VNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAA---PNCKVLVVANPANTNALILKEFAPSIPAKN 152 (320)
Q Consensus 82 aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~---~~~~viv~snP~~~~~~~~~~~~~~~~~~~ 152 (320)
.|+||+.+|..... ..+ ..+.+..|+.....+.+.+.+... ...++|++|+.... .+.+...
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~~~ 148 (245)
T PRK07060 78 FDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAAL---------VGLPDHL 148 (245)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHc---------CCCCCCc
Confidence 89999999874321 112 233566788877777777665421 12466776643211 1222222
Q ss_pred EEEeehhhHHHHHHHHHHHcC
Q 020875 153 ITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 153 i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.++.++.-..++...+++.+.
T Consensus 149 ~y~~sK~a~~~~~~~~a~~~~ 169 (245)
T PRK07060 149 AYCASKAALDAITRVLCVELG 169 (245)
T ss_pred HhHHHHHHHHHHHHHHHHHHh
Confidence 456666656666666777653
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-05 Score=72.23 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=52.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc---C------CCCcceEE
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA---F------PLLKGVVA 71 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~---~------~~~~~v~~ 71 (320)
|+ +.+||+|+| +|.+|..++..|+..|+ +|+++|+++ +.++.....+.+.. . .....++.
T Consensus 1 ~~-~~~~I~vIG-aG~mG~~iA~~l~~~g~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 69 (311)
T PRK06130 1 MN-PIQNLAIIG-AGTMGSGIAALFARKGL-------QVVLIDVME--GALERARGVIERALGVYAPLGIASAGMGRIRM 69 (311)
T ss_pred CC-CccEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHhhhcccHHHHhhceEE
Confidence 44 356999999 69999999999999887 899999864 33322111111000 0 01123556
Q ss_pred eCChhhhcCCCcEEEEeC
Q 020875 72 TTDAVEACTGVNIAVMVG 89 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~a 89 (320)
+++..+++++||+||.+.
T Consensus 70 ~~~~~~~~~~aDlVi~av 87 (311)
T PRK06130 70 EAGLAAAVSGADLVIEAV 87 (311)
T ss_pred eCCHHHHhccCCEEEEec
Confidence 667777899999999985
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-05 Score=69.16 Aligned_cols=115 Identities=21% Similarity=0.229 Sum_probs=65.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC---C
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---G 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~---~ 81 (320)
+++++|+||+|++|++++..|+++ + +|++++++. +.+.....++.+. .....++....++.++++ +
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~-------~V~~~~r~~--~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~ 71 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H-------TLLLGGRPA--ERLDELAAELPGA-TPFPVDLTDPEAIAAAVEQLGR 71 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C-------CEEEEeCCH--HHHHHHHHHhccc-eEEecCCCCHHHHHHHHHhcCC
Confidence 468999999999999999999987 5 789999863 2222111111110 011123332334444454 5
Q ss_pred CcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 82 VNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 82 aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP 133 (320)
.|+|||++|...... .+ ..+.+..|... .+.+.+.+++.. .+++++|+.
T Consensus 72 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---~~~v~~ss~ 130 (227)
T PRK08219 72 LDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH---GHVVFINSG 130 (227)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC---CeEEEEcch
Confidence 899999998743211 11 22345666666 444444444432 456666643
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.5e-05 Score=68.87 Aligned_cols=148 Identities=11% Similarity=0.094 Sum_probs=80.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-----CCCcceEEeCChhhh--
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-----PLLKGVVATTDAVEA-- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-----~~~~~v~~~~~~~~a-- 78 (320)
++|+|+||+|++|++++..|+++|. +|+++|++. +.+.....++..... ....+++...+...+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~-------~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 73 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY-------RVAVADINS--EKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSR 73 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHH
Confidence 4799999999999999999999886 899999864 223322222321110 001122211112222
Q ss_pred -----cCCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+...|+||++||.+... ..+. ...+..|+.....+ .+.+.+.. ++.++|++|+....
T Consensus 74 ~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-~~~~iv~~ss~~~~------- 145 (259)
T PRK12384 74 GVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDG-IQGRIIQINSKSGK------- 145 (259)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCC-CCcEEEEecCcccc-------
Confidence 24679999999875421 1222 23456777664444 44444332 24567777764311
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.+.+..-.|+.++.....+...+++.+
T Consensus 146 --~~~~~~~~Y~~sKaa~~~l~~~la~e~ 172 (259)
T PRK12384 146 --VGSKHNSGYSAAKFGGVGLTQSLALDL 172 (259)
T ss_pred --cCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111222245666655445555566554
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.4e-05 Score=70.76 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=61.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHh--------cccCC------CCcceE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV--------DAAFP------LLKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~--------~~~~~------~~~~v~ 70 (320)
.+||+|+| +|.+|..++..|+..|+ +|.++|+++ +.++.....+. ....+ ....++
T Consensus 4 ~~kI~vIG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 73 (292)
T PRK07530 4 IKKVGVIG-AGQMGNGIAHVCALAGY-------DVLLNDVSA--DRLEAGLATINGNLARQVAKGKISEEARAAALARIS 73 (292)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 46999999 59999999999999987 899999874 33322111111 11000 013466
Q ss_pred EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEE
Q 020875 71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~vi 128 (320)
.++++ +++++||+||.+.. . . ....+.+.+.+.++.+++++++
T Consensus 74 ~~~~~-~~~~~aD~Vieavp--e-----~-------~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 74 TATDL-EDLADCDLVIEAAT--E-----D-------ETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred eeCCH-HHhcCCCEEEEcCc--C-----C-------HHHHHHHHHHHHhhCCCCcEEE
Confidence 66665 67899999999752 1 0 1222344556666665665443
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-05 Score=74.29 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=65.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~aD 83 (320)
||||+|+| +|+||+.++..|++++-. +|.+.|++. +++... .+..+... ...-++.....+.+++++.|
T Consensus 1 m~~ilviG-aG~Vg~~va~~la~~~d~------~V~iAdRs~--~~~~~i-~~~~~~~v~~~~vD~~d~~al~~li~~~d 70 (389)
T COG1748 1 MMKILVIG-AGGVGSVVAHKLAQNGDG------EVTIADRSK--EKCARI-AELIGGKVEALQVDAADVDALVALIKDFD 70 (389)
T ss_pred CCcEEEEC-CchhHHHHHHHHHhCCCc------eEEEEeCCH--HHHHHH-HhhccccceeEEecccChHHHHHHHhcCC
Confidence 57999999 599999999999998742 899999973 333322 12211110 11123333345778899999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
+||+++.... ...+++++.+.+ .-++-.|+-.+.
T Consensus 71 ~VIn~~p~~~----------------~~~i~ka~i~~g---v~yvDts~~~~~ 104 (389)
T COG1748 71 LVINAAPPFV----------------DLTILKACIKTG---VDYVDTSYYEEP 104 (389)
T ss_pred EEEEeCCchh----------------hHHHHHHHHHhC---CCEEEcccCCch
Confidence 9999975321 135666776665 336666654433
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.9e-05 Score=68.84 Aligned_cols=149 Identities=16% Similarity=0.144 Sum_probs=87.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC----C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT----G 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~----~ 81 (320)
.+++||||+|++|.+++..|+.+|. +|+++++++ ++++.......+. .....++....+..++++ .
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~ 71 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-------QVIACGRNQ--SVLDELHTQSANI-FTLAFDVTDHPGTKAALSQLPFI 71 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHhcCCC-eEEEeeCCCHHHHHHHHHhcccC
Confidence 5799999999999999999999887 899999863 3333221111100 011122222223333333 2
Q ss_pred CcEEEEeCCCCCC-C--CCCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE
Q 020875 82 VNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (320)
Q Consensus 82 aDvVi~~ag~~~~-~--~~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~ 155 (320)
.|.+|+.+|.... + ..+. .+.+..|+.....+.+.+..+-.+..+++++|+.... .+.|....|+
T Consensus 72 ~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~---------~~~~~~~~Y~ 142 (240)
T PRK06101 72 PELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASE---------LALPRAEAYG 142 (240)
T ss_pred CCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhc---------cCCCCCchhh
Confidence 5788888875321 1 1122 3467889988888888877642133456666643211 1233333577
Q ss_pred eehhhHHHHHHHHHHHcC
Q 020875 156 LTRLDHNRALGQISEKLN 173 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~ 173 (320)
.++.....+.+.++..+.
T Consensus 143 asK~a~~~~~~~l~~e~~ 160 (240)
T PRK06101 143 ASKAAVAYFARTLQLDLR 160 (240)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777766677666765553
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.1e-05 Score=71.71 Aligned_cols=162 Identities=10% Similarity=0.044 Sum_probs=88.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh-------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE------- 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~------- 77 (320)
.++|+||||+|++|.+++..|+++|+ +|++.++++ ++++....++.... ....++....+..+
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-------~Vv~~~R~~--~~~~~~~~~l~~v~-~~~~Dl~d~~~v~~~~~~~~~ 95 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-------HVIVPARRP--DVAREALAGIDGVE-VVMLDLADLESVRAFAERFLD 95 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhhhCe-EEEccCCCHHHHHHHHHHHHh
Confidence 36899999999999999999999987 799999864 33332222222110 01112222112211
Q ss_pred hcCCCcEEEEeCCCCCCCC----CCHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH---HCC
Q 020875 78 ACTGVNIAVMVGGFPRKEG----MERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE---FAP 146 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~----~~r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~---~~~ 146 (320)
.+.+.|++|+.||....+. ...+..+..|... ++.+.+.+++.+ .+++|++|+........... ...
T Consensus 96 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~~~~~~~~~~~ 173 (315)
T PRK06196 96 SGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA--GARVVALSSAGHRRSPIRWDDPHFTR 173 (315)
T ss_pred cCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCeEEEECCHHhccCCCCccccCccC
Confidence 1346899999998643211 1234456677666 455555555542 35777777532111000000 001
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+++...|+.++.....+...+++.+. +..|+
T Consensus 174 ~~~~~~~Y~~SK~a~~~~~~~la~~~~--~~gi~ 205 (315)
T PRK06196 174 GYDKWLAYGQSKTANALFAVHLDKLGK--DQGVR 205 (315)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhc--CCCcE
Confidence 122222466666666667777777664 33455
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=74.24 Aligned_cols=120 Identities=13% Similarity=0.022 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
..++|+||||+|+||.+++..|+..|. +|++.+++. +++.....++...... ...++....+..+++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 75 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-------HVIMACRNL--KKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVD 75 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHH
Confidence 456899999999999999999999886 799999863 3333333333211100 011222212222222
Q ss_pred ------CCCcEEEEeCCCCCC----CCCC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcC
Q 020875 80 ------TGVNIAVMVGGFPRK----EGME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVAN 132 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~----~~~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~sn 132 (320)
...|++|+.||+... ...+ ....+..|+.....+.+.+. +......++|++|+
T Consensus 76 ~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS 145 (322)
T PRK07453 76 DFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGT 145 (322)
T ss_pred HHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcc
Confidence 248999999986321 1122 23456788776665555444 33211247777764
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=70.52 Aligned_cols=162 Identities=14% Similarity=0.111 Sum_probs=88.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
+.++++|+||+|++|++++..|++.|+ +|++++++. ++++....++...... ...++....+..+.
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~ 81 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-------RVVLSARKA--EELEEAAAHLEALGIDALWIAADVADEADIERLAE 81 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 347999999999999999999999886 789999863 3333322233211101 11222222222111
Q ss_pred -----cCCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCcchhhHHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+...|+|||++|...... . ...+.+..|+.....+.+.+.++ ..+..+++++|+...... .
T Consensus 82 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~----~- 156 (259)
T PRK08213 82 ETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGG----N- 156 (259)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccC----C-
Confidence 246799999998642111 1 12345678888888888877654 112356777765321100 0
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.++...-|+.++.-...+...+++.+. +..++.
T Consensus 157 ~~~~~~~~~Y~~sKa~~~~~~~~~a~~~~--~~gi~v 191 (259)
T PRK08213 157 PPEVMDTIAYNTSKGAVINFTRALAAEWG--PHGIRV 191 (259)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHHHhc--ccCEEE
Confidence 00011112344554444455566677654 345653
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.4e-05 Score=70.20 Aligned_cols=124 Identities=21% Similarity=0.233 Sum_probs=73.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCChhh-
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVE- 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~- 77 (320)
|+.+.++|+|+||+|++|..++..|+++|. +|+++++++ +.+.....++..... ....++....+..+
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 71 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALAAAGA-------RLLLVGRNA--EKLEALAARLPYPGRHRWVVADLTSEAGREAV 71 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 777778999999999999999999999886 899999863 333322222211100 00011111111111
Q ss_pred -----hcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCc
Q 020875 78 -----ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANP 133 (320)
Q Consensus 78 -----al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP 133 (320)
.+...|+||++||...... .+ ..+.+..|+.....+.+.+.++-. +...++++++.
T Consensus 72 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~ 140 (263)
T PRK09072 72 LARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST 140 (263)
T ss_pred HHHHHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 1356899999998753211 11 234567888777777766654311 22456666653
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.1e-05 Score=71.04 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=89.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCCh-------
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA------- 75 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~------- 75 (320)
++++||||+|.+|.+++..|+++|. +|++.+++.+.+.++.....+...... ...++....+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~-------~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 122 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA-------DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEA 122 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-------EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 5899999999999999999999987 788877653222222221112111100 01122111111
Q ss_pred hhhcCCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 76 VEACTGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
.+.+...|++|+.||.... + ..+ ..+.+..|+.....+++.+...-..+..+|++|+.... .+.
T Consensus 123 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~---------~~~ 193 (294)
T PRK07985 123 HKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAY---------QPS 193 (294)
T ss_pred HHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhc---------cCC
Confidence 1224467999999986321 1 112 23457788888777777776542234567777754311 122
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+..-.|+.++.....+-+.+++.++ +..|+.
T Consensus 194 ~~~~~Y~asKaal~~l~~~la~el~--~~gIrv 224 (294)
T PRK07985 194 PHLLDYAATKAAILNYSRGLAKQVA--EKGIRV 224 (294)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHh--HhCcEE
Confidence 2222466666655566666777653 334553
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.5e-05 Score=71.89 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=63.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHH---HHhcccCCCCcceEEeCChhhhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM---ELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~---dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
|||+|+| +|.+|..++..|.+.|+ +|.++++ + ++++.... .+..............++..++.+++
T Consensus 1 mkI~IiG-~G~iG~~~a~~L~~~g~-------~V~~~~r-~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (305)
T PRK12921 1 MRIAVVG-AGAVGGTFGGRLLEAGR-------DVTFLVR-P--KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPF 69 (305)
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCCC-------ceEEEec-H--HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCC
Confidence 6899999 69999999999999887 7999998 3 22322111 01100000000112234445556899
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
|+||++.... ...++++.++.+..++..+|.+.|.++....+
T Consensus 70 d~vilavk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l 111 (305)
T PRK12921 70 DLVILAVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQL 111 (305)
T ss_pred CEEEEEeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHH
Confidence 9999985321 12334455555433556677788987654433
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.8e-05 Score=66.93 Aligned_cols=161 Identities=10% Similarity=0.134 Sum_probs=88.7
Q ss_pred CCC-CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-
Q 020875 1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA- 78 (320)
Q Consensus 1 m~~-~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a- 78 (320)
|+. +.++|.|+||+|.||++++..|+++|. ++++.+++. .+.++....++. .. ....++.......+.
T Consensus 1 m~~~~~k~vlItGasggIG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~~l~~~~~-~~-~~~~D~~~~~~~~~~~ 70 (237)
T PRK12742 1 MGAFTGKKVLVLGGSRGIGAAIVRRFVTDGA-------NVRFTYAGS-KDAAERLAQETG-AT-AVQTDSADRDAVIDVV 70 (237)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEecCCC-HHHHHHHHHHhC-Ce-EEecCCCCHHHHHHHH
Confidence 443 346899999999999999999999886 777765532 122222111111 00 001111111112222
Q ss_pred --cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCC
Q 020875 79 --CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (320)
Q Consensus 79 --l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~ 150 (320)
....|++|+.+|..... ..+ ....+..|+.....++..+.+.-.+...+|++|.-... . ...+.
T Consensus 71 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~------~--~~~~~ 142 (237)
T PRK12742 71 RKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD------R--MPVAG 142 (237)
T ss_pred HHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc------c--CCCCC
Confidence 34589999999874321 112 23456778777666655554432234567776653210 0 11233
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|+.++.....+...+++.++ +..|+.
T Consensus 143 ~~~Y~~sKaa~~~~~~~la~~~~--~~gi~v 171 (237)
T PRK12742 143 MAAYAASKSALQGMARGLARDFG--PRGITI 171 (237)
T ss_pred CcchHHhHHHHHHHHHHHHHHHh--hhCeEE
Confidence 33577777777777777888765 344553
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.5e-05 Score=74.59 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=66.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHH-------HHh---cccCCCCcceEEeCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-------ELV---DAAFPLLKGVVATTD 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~-------dl~---~~~~~~~~~v~~~~~ 74 (320)
.+||+|+| +|.+|+.++..|+..|+ +|.++|+++ ++++.... .+. .........+...++
T Consensus 4 i~kIavIG-~G~MG~~iA~~la~~G~-------~V~v~D~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 4 IMKAACIG-GGVIGGGWAARFLLAGI-------DVAVFDPHP--EAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred cCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 36999999 69999999999999997 899999974 33322110 000 000001123666677
Q ss_pred hhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 75 AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
+.+++++||+||.+.. . + .+..+.+...+.+.+++++ |+.||.+++
T Consensus 74 ~~ea~~~aD~Vieavp--e-----~-------~~vk~~l~~~l~~~~~~~~--iI~SsTsgi 119 (495)
T PRK07531 74 LAEAVAGADWIQESVP--E-----R-------LDLKRRVLAEIDAAARPDA--LIGSSTSGF 119 (495)
T ss_pred HHHHhcCCCEEEEcCc--C-----C-------HHHHHHHHHHHHhhCCCCc--EEEEcCCCC
Confidence 8889999999998741 1 1 1223444455666664554 456665554
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.10 E-value=3e-05 Score=79.49 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=95.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhH-H--HHHHH-----hccc-CC-----CCcceE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-G--VKMEL-----VDAA-FP-----LLKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~-~--~~~dl-----~~~~-~~-----~~~~v~ 70 (320)
..||+|+| +|.+|..++..++..|+ +|+|+|.++ +.+. + ..... .... .. ....++
T Consensus 313 i~~v~ViG-aG~mG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 382 (714)
T TIGR02437 313 VKQAAVLG-AGIMGGGIAYQSASKGT-------PIVMKDINQ--HSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGIT 382 (714)
T ss_pred cceEEEEC-CchHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 36999999 59999999999999998 899999974 2221 1 11111 1110 00 124677
Q ss_pred EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh-hHHHHHHHCCCC-
Q 020875 71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALILKEFAPSI- 148 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~-~~~~~~~~~~~~- 148 (320)
.++++ +++++||+||-++ -++.+.-+++...+.+.++|++ |++||.+.+ ++.+... ...
T Consensus 383 ~~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~l~i~~ia~~--~~~p 443 (714)
T TIGR02437 383 PTLSY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNTSTISISLLAKA--LKRP 443 (714)
T ss_pred EeCCH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhh--cCCc
Confidence 77775 7799999999874 2345667889999999987765 678887765 3344332 222
Q ss_pred ----------CCC--c---EE--EeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 149 ----------PAK--N---IT--CLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 149 ----------~~~--~---i~--~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
|++ + |+ ..|.-++......+++.+|..|--++
T Consensus 444 ~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 492 (714)
T TIGR02437 444 ENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVVN 492 (714)
T ss_pred ccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 1 22 23555665556667788887665554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.4e-05 Score=79.06 Aligned_cols=146 Identities=18% Similarity=0.224 Sum_probs=92.6
Q ss_pred CEEEEEcCCChhHHHHHHHHH-hcCcCCCCCCeEEEEEecCCccchhHH---HHH-HHhcc----c-CC-----CCcceE
Q 020875 6 VRVLVTGAAGQIGYALVPMIA-RGVMLGTDQPVILHMLDIPPAAEALNG---VKM-ELVDA----A-FP-----LLKGVV 70 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~-~~~~~~~~~~~ev~l~D~~~~~~~~~~---~~~-dl~~~----~-~~-----~~~~v~ 70 (320)
.||+|+| +|.+|+.++..++ ..|+ +|+|+|.++ +.+.. ... .+... . .+ ....++
T Consensus 305 ~~v~ViG-aG~mG~~iA~~~a~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 374 (699)
T TIGR02440 305 KKVGILG-GGLMGGGIASVTATKAGI-------PVRIKDINP--QGINNALKYAWKLLDKGVKRRHMTPAERDNQMALIT 374 (699)
T ss_pred cEEEEEC-CcHHHHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeE
Confidence 5899999 5999999999888 4787 899999974 22211 111 11111 0 00 124677
Q ss_pred EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh-hHHHHHHHCCCC-
Q 020875 71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALILKEFAPSI- 148 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~-~~~~~~~~~~~~- 148 (320)
.++++ +++++||+||-++ -++.+.-+++...+.+++++++ |+.||.+.+ ++.+... . ..
T Consensus 375 ~~~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la~~-~-~~p 435 (699)
T TIGR02440 375 GTTDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIAAA-A-SRP 435 (699)
T ss_pred EeCCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHHHh-c-CCc
Confidence 77776 6899999999874 2235667889999999986664 678887765 3444332 1 22
Q ss_pred ----------CCC--c---EE--EeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 149 ----------PAK--N---IT--CLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 149 ----------~~~--~---i~--~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
|+. + |+ -.|.-++......+.+.+|..|--++
T Consensus 436 ~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 436 ENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred ccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 222 1 22 23555555555667788887665444
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.1e-05 Score=71.02 Aligned_cols=124 Identities=24% Similarity=0.255 Sum_probs=70.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhhc
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~al 79 (320)
|++++|||+|+| +|.+|+.++..|...|+ +|.++.++. .+........+...... ....+...++ .++.
T Consensus 1 ~~~~~m~I~IiG-~GaiG~~lA~~L~~~g~-------~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 70 (313)
T PRK06249 1 MDSETPRIGIIG-TGAIGGFYGAMLARAGF-------DVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRS-AEDM 70 (313)
T ss_pred CCCcCcEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcc-hhhc
Confidence 889999999999 59999999999999887 888998863 12111100011100000 0111233333 2356
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEE
Q 020875 80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT 154 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~ 154 (320)
..+|+||++.-... ..++++.+.....++..++.+.|=.+.--.+ .++ +|+.+++
T Consensus 71 ~~~D~vilavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l-~~~---~~~~~v~ 125 (313)
T PRK06249 71 PPCDWVLVGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEEQL-REI---LPAEHLL 125 (313)
T ss_pred CCCCEEEEEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHHHH-HHH---CCCCcEE
Confidence 78999999853221 1233344444333566777788876543333 332 4555543
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.9e-05 Score=79.72 Aligned_cols=147 Identities=19% Similarity=0.180 Sum_probs=94.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH---HHHH-H----hcccC-C-----CCcceEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG---VKME-L----VDAAF-P-----LLKGVVA 71 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~---~~~d-l----~~~~~-~-----~~~~v~~ 71 (320)
.||+|+| +|.+|..++..++..|+ +|+|+|.++ +.++. .... + ..... + ....++.
T Consensus 314 ~~v~ViG-aG~mG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 314 KQAAVLG-AGIMGGGIAYQSASKGV-------PVIMKDINQ--KALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred ceEEEEC-CchhHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 5899999 59999999999999998 899999974 22221 1111 1 11100 0 1356777
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh-hHHHHHHHCCCCC-
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALILKEFAPSIP- 149 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~-~~~~~~~~~~~~~- 149 (320)
++++ +++++||+||-+. -++.+.-+++...++++++|++ |+.||.+.+ ++.+... ...|
T Consensus 384 ~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la~~--~~~p~ 444 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTSTISISLLAKA--LKRPE 444 (715)
T ss_pred eCCH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHhh--cCCCc
Confidence 7776 7799999999874 2345667889999999996664 678887765 3444432 2222
Q ss_pred ----------CC--c---EEE--eehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 150 ----------AK--N---ITC--LTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 150 ----------~~--~---i~~--~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+. + |+. .|.-++......+++.+|..|--++.
T Consensus 445 r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d 493 (715)
T PRK11730 445 NFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVND 493 (715)
T ss_pred cEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecC
Confidence 22 1 222 24555555555677888876654443
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=5e-05 Score=67.77 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh--
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE-- 77 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~-- 77 (320)
...++++||||+|.+|.+++..|++.|. ++++.++++ +++.....++.+.... ...++....+..+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-------~vvl~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-------EIIINDITA--ERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAI 77 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHH
Confidence 3456899999999999999999999886 899999864 3333333334322110 1112221111222
Q ss_pred -----hcCCCcEEEEeCCCCCC-C--CC---CHHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHH
Q 020875 78 -----ACTGVNIAVMVGGFPRK-E--GM---ERKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 78 -----al~~aDvVi~~ag~~~~-~--~~---~r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~ 144 (320)
.+...|+||+.+|.... + .. +....+..|+.....+.+.+.++. ....++|++|+-.. .
T Consensus 78 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~-------~- 149 (254)
T PRK08085 78 EHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQS-------E- 149 (254)
T ss_pred HHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchh-------c-
Confidence 22457999999986421 1 11 223456777776666666555432 12356777764321 1
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+....|+.++.--..+-+.+++.+. +..|+
T Consensus 150 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~ 182 (254)
T PRK08085 150 -LGRDTITPYAASKGAVKMLTRGMCVELA--RHNIQ 182 (254)
T ss_pred -cCCCCCcchHHHHHHHHHHHHHHHHHHH--hhCeE
Confidence 1222222455555544455555666543 34455
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.5e-05 Score=69.39 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=83.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh------
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE------ 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~------ 77 (320)
+.++++|+||+|++|+.++..|++.|+ ++++++++. .... .+.......++....+..+
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~-------~v~~~~~~~----~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGA-------KVIGFDQAF----LTQE----DYPFATFVLDVSDAAAVAQVCQRLL 71 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecch----hhhc----CCceEEEEecCCCHHHHHHHHHHHH
Confidence 447899999999999999999999887 788888753 1000 0000000011111112222
Q ss_pred -hcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 78 -ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 78 -al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
.+...|+||+++|...... .+ ....+..|+.....+++.+..+- ....+++++|+-.. . ...
T Consensus 72 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~-------~--~~~ 142 (252)
T PRK08220 72 AETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAA-------H--VPR 142 (252)
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchh-------c--cCC
Confidence 2345799999998743211 12 23456778777666666654321 02346666665321 0 111
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+..-.|+.++.-...+...+++.+. +..++.
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v 173 (252)
T PRK08220 143 IGMAAYGASKAALTSLAKCVGLELA--PYGVRC 173 (252)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhh--HhCeEE
Confidence 2112356666555566666777654 345553
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.2e-05 Score=67.69 Aligned_cols=151 Identities=13% Similarity=0.121 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh--
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE-- 77 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~-- 77 (320)
.+.+++.||||+|.+|.+++..|+..|. ++++.+++. ++++....++...... ...++....+..+
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~-------~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 78 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA-------TIVFNDINQ--ELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMV 78 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 3446899999999999999999999887 788888764 3343333333321111 1112221112222
Q ss_pred -----hcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 78 -----ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 78 -----al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~----~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
.+...|++|+++|..... ..+ ....+..|......+. +.+++. ...++|++++....
T Consensus 79 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~~~------ 150 (265)
T PRK07097 79 SQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKK--GHGKIINICSMMSE------ 150 (265)
T ss_pred HHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCcccc------
Confidence 234579999999874311 111 2234556665544444 444333 24577777764321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+....|+.++.-...+.+.+++.++
T Consensus 151 ---~~~~~~~~Y~~sKaal~~l~~~la~e~~ 178 (265)
T PRK07097 151 ---LGRETVSAYAAAKGGLKMLTKNIASEYG 178 (265)
T ss_pred ---CCCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence 1222223567776666677777777765
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.4e-05 Score=68.35 Aligned_cols=158 Identities=14% Similarity=0.088 Sum_probs=88.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc--cCC---CCcceEEeCChhhh-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--AFP---LLKGVVATTDAVEA- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~--~~~---~~~~v~~~~~~~~a- 78 (320)
.++++|+||+|.+|.+++..|+++|. +|+++++++ +.++....++... ... ...++....+..++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-------~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-------AVALADLDA--ALAERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 46899999999999999999999986 799999864 3344333344321 100 11122222222222
Q ss_pred ------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHH
Q 020875 79 ------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 79 ------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+...|++|+.||..... ..+ ....+..|+.....+.+.+..+- ...+.+|++|+....
T Consensus 78 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~-------- 149 (260)
T PRK07063 78 AAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAF-------- 149 (260)
T ss_pred HHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhc--------
Confidence 24689999999864311 111 23345667666555555443221 123677777754211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.+..-.|+.++..-..+-+.+++.+. +..|+..
T Consensus 150 -~~~~~~~~Y~~sKaa~~~~~~~la~el~--~~gIrvn 184 (260)
T PRK07063 150 -KIIPGCFPYPVAKHGLLGLTRALGIEYA--ARNVRVN 184 (260)
T ss_pred -cCCCCchHHHHHHHHHHHHHHHHHHHhC--ccCeEEE
Confidence 1222222456666555566667777764 4566643
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.4e-05 Score=68.43 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=85.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCChhh------
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVE------ 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~------ 77 (320)
|+++||||+|.+|.+++..|+++|. +|++.++++ +.+.....++.+... ....++....+..+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-------RVVISSRNE--ENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 5899999999999999999999987 799999864 333333333432110 01112222112222
Q ss_pred -hcCCCcEEEEeCCCCCC-C----CCCHHH---HHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 78 -ACTGVNIAVMVGGFPRK-E----GMERKD---VMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 78 -al~~aDvVi~~ag~~~~-~----~~~r~~---~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
.+...|++|+.||.... + ..+..+ .+..|+. ..+.+++.+.+.. ..+++|++|+....
T Consensus 72 ~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~g~iv~isS~~~~-------- 142 (259)
T PRK08340 72 ELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKK-MKGVLVYLSSVSVK-------- 142 (259)
T ss_pred HhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCEEEEEeCcccC--------
Confidence 23468999999986421 1 112222 2333432 2344455544322 34567777754211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
...|..-.++.++--...+-+.+|+.++ +..|+..
T Consensus 143 -~~~~~~~~y~~sKaa~~~~~~~la~e~~--~~gI~v~ 177 (259)
T PRK08340 143 -EPMPPLVLADVTRAGLVQLAKGVSRTYG--GKGIRAY 177 (259)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHhC--CCCEEEE
Confidence 1222222455555555566667777765 4566643
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00018 Score=63.84 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=86.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC----CcceEEe--C-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----LKGVVAT--T----- 73 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~----~~~v~~~--~----- 73 (320)
.++|.|+||+|++|.+++..|++.|. +|+++|++. +.+.....++.+..... ..++... .
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 82 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGA-------TVILLGRTE--EKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQL 82 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHH
Confidence 46899999999999999999999886 789999864 33333334443322110 0111110 0
Q ss_pred --ChhhhcCCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHH
Q 020875 74 --DAVEACTGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILK 142 (320)
Q Consensus 74 --~~~~al~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~ 142 (320)
...+.+...|+||+.||.... + ..+ ..+.+..|+.....+.+.+..+. .+...++++|+....
T Consensus 83 ~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~------ 156 (247)
T PRK08945 83 ADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGR------ 156 (247)
T ss_pred HHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhc------
Confidence 122334568999999986321 1 112 23456778776555555553221 133466666653211
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+....++.++.-...+...+++.+. ...++
T Consensus 157 ---~~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~ 189 (247)
T PRK08945 157 ---QGRANWGAYAVSKFATEGMMQVLADEYQ--GTNLR 189 (247)
T ss_pred ---CCCCCCcccHHHHHHHHHHHHHHHHHhc--ccCEE
Confidence 1223223466665544555556666654 34555
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.2e-05 Score=71.62 Aligned_cols=107 Identities=24% Similarity=0.344 Sum_probs=65.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCC-CCeEEEEEecCCc--cchhHHHHHHHhcccCC------CCcceEEeCChhh
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTD-QPVILHMLDIPPA--AEALNGVKMELVDAAFP------LLKGVVATTDAVE 77 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~-~~~ev~l~D~~~~--~~~~~~~~~dl~~~~~~------~~~~v~~~~~~~~ 77 (320)
||+|+| +|..|++++..|..++..... ...+|.|+.+++. .+.+. ....-.+.... +..+++.++++.+
T Consensus 1 kI~VIG-aG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~-~~in~~~~n~~ylpgi~Lp~~i~at~dl~e 78 (342)
T TIGR03376 1 RVAVVG-SGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLT-EIINTTHENVKYLPGIKLPANLVAVPDLVE 78 (342)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHH-HHHHhcCCCccccCCCcCCCCeEEECCHHH
Confidence 699999 699999999999987721100 0018999987431 01111 11111222221 2346888889999
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
++++||+||++. |. +.++++++.++.+-.++..+|.++
T Consensus 79 al~~ADiIIlAV--Ps--------------~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 79 AAKGADILVFVI--PH--------------QFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred HHhcCCEEEEEC--Ch--------------HHHHHHHHHHHhhcCCCCEEEEEe
Confidence 999999999873 32 345566666665543444455554
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.7e-05 Score=66.63 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=86.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
+.+.++|+||+|.+|.+++..|++.|. +|+++|+.+..+ . ..++...... ...++....+..+.
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-------~vv~~~~~~~~~-~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 77 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC-------DIVGINIVEPTE-T---IEQVTALGRRFLSLTADLRKIDGIPALLE 77 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEecCcchHH-H---HHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 346899999999999999999999886 788888753211 1 1122211100 01122211122222
Q ss_pred -----cCCCcEEEEeCCCCCCC---CC---CHHHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKE---GM---ERKDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~---~~---~r~~~~~~n~~~~~~i~~~i~~----~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+...|++|++||..... .. +..+.+..|+.....+.+.+.. .+ +.++++++|+-...
T Consensus 78 ~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~------- 149 (253)
T PRK08993 78 RAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQG-NGGKIINIASMLSF------- 149 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC-CCeEEEEECchhhc-------
Confidence 34689999999875321 11 2334567887766655555443 22 34677777753211
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+|+.+. +..|+.
T Consensus 150 --~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v 183 (253)
T PRK08993 150 --QGGIRVPSYTASKSGVMGVTRLMANEWA--KHNINV 183 (253)
T ss_pred --cCCCCCcchHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 1112112466666655556666777654 345553
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.5e-05 Score=71.54 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=51.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHH---HHhccc-----C------CCCcceEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM---ELVDAA-----F------PLLKGVVA 71 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~---dl~~~~-----~------~~~~~v~~ 71 (320)
.||+|+| +|.+|..++..|+..|+ +|+++|+++ +.++.... ++.+.. . .....++.
T Consensus 2 ~~V~VIG-~G~mG~~iA~~la~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVG-AGVMGRGIAYVFAVSGF-------QTTLVDIKQ--EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 4899999 59999999999999887 899999974 33322111 111000 0 01234666
Q ss_pred eCChhhhcCCCcEEEEeC
Q 020875 72 TTDAVEACTGVNIAVMVG 89 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~a 89 (320)
++++.+++++||+||.+.
T Consensus 72 ~~~~~~~~~~aD~Vi~av 89 (288)
T PRK09260 72 SLDLKAAVADADLVIEAV 89 (288)
T ss_pred eCcHHHhhcCCCEEEEec
Confidence 778888999999999985
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.2e-05 Score=69.45 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh-----
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE----- 77 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~----- 77 (320)
.+.++++|+||+|.+|.+++..|++.|. +|+++++++ ++++....++.........++....+..+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-------RVAVLERSA--EKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQT 74 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHH
Confidence 3457999999999999999999999887 799999864 33332222221100001112221112222
Q ss_pred --hcCCCcEEEEeCCCCCC--C--CCCH-------HHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCcchhhHHHHHH
Q 020875 78 --ACTGVNIAVMVGGFPRK--E--GMER-------KDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 78 --al~~aDvVi~~ag~~~~--~--~~~r-------~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+...|++|+.||+... + ..+. ...+..|+.....+++.+...- ...+.+|++++-...
T Consensus 75 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~------- 147 (263)
T PRK06200 75 VDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSF------- 147 (263)
T ss_pred HHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhc-------
Confidence 23468999999997421 1 1121 2234566665555554444321 022456666542211
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
...+..-.|+.++.-...+-+.+|+.++
T Consensus 148 --~~~~~~~~Y~~sK~a~~~~~~~la~el~ 175 (263)
T PRK06200 148 --YPGGGGPLYTASKHAVVGLVRQLAYELA 175 (263)
T ss_pred --CCCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 1122222577777767777778888875
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.06 E-value=3e-05 Score=58.64 Aligned_cols=94 Identities=20% Similarity=0.223 Sum_probs=58.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE-ecCCccchhHHHHHHHhcccCCCCcceEEeC-ChhhhcCCCcE
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFPLLKGVVATT-DAVEACTGVNI 84 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~-D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~-~~~~al~~aDv 84 (320)
||+|+| +|.+|++++..|...+.. ..+|.++ ++++ ++++....++. +.... +..++++++|+
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~----~~~v~~~~~r~~--~~~~~~~~~~~---------~~~~~~~~~~~~~~adv 64 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIK----PHEVIIVSSRSP--EKAAELAKEYG---------VQATADDNEEAAQEADV 64 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-----GGEEEEEEESSH--HHHHHHHHHCT---------TEEESEEHHHHHHHTSE
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCC----ceeEEeeccCcH--HHHHHHHHhhc---------cccccCChHHhhccCCE
Confidence 799999 699999999999998841 1278755 7763 44433222221 22222 57788899999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
||++.-. +.+.++++.+.... ++..+|-++||
T Consensus 65 vilav~p----------------~~~~~v~~~i~~~~-~~~~vis~~ag 96 (96)
T PF03807_consen 65 VILAVKP----------------QQLPEVLSEIPHLL-KGKLVISIAAG 96 (96)
T ss_dssp EEE-S-G----------------GGHHHHHHHHHHHH-TTSEEEEESTT
T ss_pred EEEEECH----------------HHHHHHHHHHhhcc-CCCEEEEeCCC
Confidence 9998521 11344555553333 55667777765
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.1e-05 Score=66.60 Aligned_cols=153 Identities=19% Similarity=0.189 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc--cchhHHHHHHHhcccCC---CCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA--AEALNGVKMELVDAAFP---LLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~--~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a 78 (320)
+.++|+|+||+|++|++++..|+++|+ +++++++... .+.......++...... ...++....+..+.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA-------DVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAA 77 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 357999999999999999999999887 7888775321 12222111222111100 01111111122222
Q ss_pred -------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHh-hh--cCCCeEEEEEcCcchhhHHHHH
Q 020875 79 -------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALE-QH--AAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 79 -------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~-~~--~~~~~~viv~snP~~~~~~~~~ 142 (320)
....|+||+.+|..... ..+ ....+..|......+++.+. .. .....++|++|.....
T Consensus 78 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------ 151 (249)
T PRK12827 78 LDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGV------ 151 (249)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhc------
Confidence 24689999999875421 112 23456788888888888876 21 0022456767654321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.+.+....++.++.-...+.+.+++.+
T Consensus 152 ---~~~~~~~~y~~sK~a~~~~~~~l~~~~ 178 (249)
T PRK12827 152 ---RGNRGQVNYAASKAGLIGLTKTLANEL 178 (249)
T ss_pred ---CCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 122222245555544444445566554
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.4e-05 Score=67.97 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=66.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
+++|+|+||+|++|++++..|+++|+ ++.+..++.. ........++...... ...++....+..++
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 77 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA-------DVVVHYRSDE-EAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAA 77 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCCH-HHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHH
Confidence 46899999999999999999999987 6666554321 2222222222211100 01122111122222
Q ss_pred ----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcC
Q 020875 79 ----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVAN 132 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~sn 132 (320)
+.+.|+||+++|...... .+ ..+.+..|+.....+.+.+. +.. ..+++++|+
T Consensus 78 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~i~~SS 143 (249)
T PRK12825 78 AVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR--GGRIVNISS 143 (249)
T ss_pred HHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEECc
Confidence 346799999998643211 12 23456677777777766663 332 245666664
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.8e-06 Score=72.15 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=31.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+|+++|+||+|++|.+++..|++.|. +|++++++.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~-------~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI-------AVLGVARSR 35 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC-------EEEEEecCc
Confidence 46899999999999999999999886 788888864
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.5e-05 Score=66.20 Aligned_cols=144 Identities=14% Similarity=0.124 Sum_probs=82.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|+++|+||+|.+|.+++..|.++ . +|++.+++.. ....|+.+... + ....+.+...|++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~-------~vi~~~r~~~-----~~~~D~~~~~~-----~---~~~~~~~~~id~l 59 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H-------EVITAGRSSG-----DVQVDITDPAS-----I---RALFEKVGKVDAV 59 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C-------cEEEEecCCC-----ceEecCCChHH-----H---HHHHHhcCCCCEE
Confidence 48999999999999999999887 4 7888887631 12235444320 0 0111223478999
Q ss_pred EEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehh
Q 020875 86 VMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRL 159 (320)
Q Consensus 86 i~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~l 159 (320)
|+.+|..... ..+. .+.+..|+.....+.+.+.++-.+...++++|..... .+.|..-.|+.++-
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~---------~~~~~~~~Y~~sK~ 130 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSD---------EPIPGGASAATVNG 130 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccC---------CCCCCchHHHHHHH
Confidence 9999874321 1222 2345677777667776665542233556666642210 12222123455554
Q ss_pred hHHHHHHHHHHHcCCCCCCeeee
Q 020875 160 DHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 160 d~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
-...+-..++..+ +..++..
T Consensus 131 a~~~~~~~la~e~---~~gi~v~ 150 (199)
T PRK07578 131 ALEGFVKAAALEL---PRGIRIN 150 (199)
T ss_pred HHHHHHHHHHHHc---cCCeEEE
Confidence 4455666677766 3456643
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.7e-05 Score=66.54 Aligned_cols=154 Identities=14% Similarity=0.215 Sum_probs=87.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C---CCCcceEEeCChhhhc-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F---PLLKGVVATTDAVEAC- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~---~~~~~v~~~~~~~~al- 79 (320)
.+.++||||+|.+|.+++..|++.|. +|++.+++. ++++....++.... . ....++....+..+.+
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA-------DVILLSRNE--ENLKKAREKIKSESNVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 45789999999999999999999987 799999864 33433333332211 0 0111222222222222
Q ss_pred -----CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 -----TGVNIAVMVGGFPRKE---GME---RKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|++|+.+|..... ..+ ....+..|+. .++.+.+.+++.. .+++|++|+....
T Consensus 79 ~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~--~g~Ii~isS~~~~-------- 148 (263)
T PRK08339 79 ELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG--FGRIIYSTSVAIK-------- 148 (263)
T ss_pred HHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEcCcccc--------
Confidence 3589999999875321 122 2234555543 4566666666543 3677777764311
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|..-.++.++.-...+-+.+|+.+. +..|+
T Consensus 149 -~~~~~~~~y~asKaal~~l~~~la~el~--~~gIr 181 (263)
T PRK08339 149 -EPIPNIALSNVVRISMAGLVRTLAKELG--PKGIT 181 (263)
T ss_pred -CCCCcchhhHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence 1122112355555555566677777765 45566
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00011 Score=68.84 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=86.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++|+||||+|.+|.+++..|+.+|. +|+++++++ ++++....++...... ...++....+..++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~-------~Vvl~~R~~--~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA-------KVVLLARGE--EGLEALAAEIRAAGGEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 36899999999999999999999987 799999863 3444333334321111 01122222222222
Q ss_pred ----cCCCcEEEEeCCCCCCC---CCCH---HHHHHhhH----HHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 79 ----CTGVNIAVMVGGFPRKE---GMER---KDVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~----~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+...|++|+.+|..... ..+. ...+..|+ ..++.+.+.+.+.. ...+|++|+-...
T Consensus 79 ~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~--~g~iV~isS~~~~-------- 148 (334)
T PRK07109 79 AEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD--RGAIIQVGSALAY-------- 148 (334)
T ss_pred HHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEeCChhhc--------
Confidence 34689999999864311 1122 22344554 34555666665542 3567777653211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
.+.|..-.|+.++.-...+...++..+......|+...
T Consensus 149 -~~~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~ 186 (334)
T PRK07109 149 -RSIPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTM 186 (334)
T ss_pred -cCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 11222223455554444555556666654434566443
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.2e-05 Score=67.81 Aligned_cols=150 Identities=14% Similarity=0.103 Sum_probs=82.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++|+|+||+|++|++++..|++.|. +|++++++. +.......++...... ...++....+..++
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-------KVAVFDLNR--EAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAA 73 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEecCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999999886 899999864 3333222333221100 01122211122222
Q ss_pred ----cCCCcEEEEeCCCCCCCC---CCH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 ----CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~---~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+...|+||+.+|...... .+. ...+..|+.....+.+.+...- .+..+++++|+.... .
T Consensus 74 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~---------~ 144 (250)
T TIGR03206 74 AEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAAR---------V 144 (250)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhc---------c
Confidence 236899999998632111 122 2346788887777666654321 023467777653211 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
+.+....++.++.....+...+++.+
T Consensus 145 ~~~~~~~Y~~sK~a~~~~~~~la~~~ 170 (250)
T TIGR03206 145 GSSGEAVYAACKGGLVAFSKTMAREH 170 (250)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 22222245555544445555566664
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-05 Score=74.35 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC 79 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al 79 (320)
.+.++|+||||+|.+|++++..|+++|. +|+++++++ +++... +.+.... ...++....+..+.+
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~-------~Vi~l~r~~--~~l~~~---~~~~~~~v~~v~~Dvsd~~~v~~~l 243 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGA-------KVVALTSNS--DKITLE---INGEDLPVKTLHWQVGQEAALAELL 243 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHH---HhhcCCCeEEEEeeCCCHHHHHHHh
Confidence 3457999999999999999999999886 788888763 222211 1111100 011222222344567
Q ss_pred CCCcEEEEeCCCCCCCCCC---HHHHHHhhHHHHHHHHHHHh
Q 020875 80 TGVNIAVMVGGFPRKEGME---RKDVMSKNVSIYKAQASALE 118 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~~~---r~~~~~~n~~~~~~i~~~i~ 118 (320)
.+.|++|+.||.......+ ..+.++.|......+.+.+.
T Consensus 244 ~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~l 285 (406)
T PRK07424 244 EKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFF 285 (406)
T ss_pred CCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999875322222 23467778776666666543
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.7e-05 Score=69.26 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=65.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc----CCCCcceEEeCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA----FPLLKGVVATTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~----~~~~~~v~~~~~~~~al~ 80 (320)
||||+|+| +|.+|+.++..|...|+ +|.++|+++ +.++....+..+.. ......+...++..++++
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNGH-------DVTLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 47999999 69999999999999887 899999863 23322221100000 011123555567777889
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
++|+||++... ..+.++++.+..+..++..+|..+|-++
T Consensus 71 ~~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 DADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 99999998531 1223444455554335566777776543
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.9e-05 Score=78.92 Aligned_cols=146 Identities=18% Similarity=0.199 Sum_probs=94.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH---HHHHHhc-----cc-CC-----CCcceEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG---VKMELVD-----AA-FP-----LLKGVVA 71 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~---~~~dl~~-----~~-~~-----~~~~v~~ 71 (320)
.||+|+| +|.+|+.++..++..|+ +|+|+|+++ +.+.. ...+..+ .. .+ ....++.
T Consensus 336 ~~v~ViG-aG~MG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 405 (737)
T TIGR02441 336 KTLAVLG-AGLMGAGIAQVSVDKGL-------KTVLKDATP--AGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP 405 (737)
T ss_pred cEEEEEC-CCHhHHHHHHHHHhCCC-------cEEEecCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 6899999 59999999999999997 899999974 22221 1111111 00 00 1256777
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh-hHHHHHHHCCCC--
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALILKEFAPSI-- 148 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~-~~~~~~~~~~~~-- 148 (320)
++++ +++++||+||-++ -+|.+.-+++...+.++++|++ |++||.+.+ ++.+... ...
T Consensus 406 ~~~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la~~--~~~p~ 466 (737)
T TIGR02441 406 TLDY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHC--IIASNTSALPIKDIAAV--SSRPE 466 (737)
T ss_pred eCCH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHhh--cCCcc
Confidence 7775 6899999999864 2345677899999999997765 577887765 3333332 222
Q ss_pred ---------CCC--c---EE--EeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 149 ---------PAK--N---IT--CLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 149 ---------~~~--~---i~--~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
|++ + |+ -.|.-++......+++.+|..|--++
T Consensus 467 r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 514 (737)
T TIGR02441 467 KVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVK 514 (737)
T ss_pred ceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 222 1 22 23556665556678888887654443
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00014 Score=64.72 Aligned_cols=157 Identities=15% Similarity=0.091 Sum_probs=88.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCC-------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD------- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~------- 74 (320)
.++++||||+|++|.+++..|++.|. .|++.+.+. .+.++....++...... ...++....+
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA-------LVAIHYGNR-KEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSS 75 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------eEEEEcCCC-HHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHH
Confidence 45899999999999999999999886 777765322 23333333333221100 0011111101
Q ss_pred hhhhc------CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 75 AVEAC------TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 75 ~~~al------~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
..+.+ ...|++|+.||..... ..+ ....+..|+.....+++.+.+.-...+++|++|+-...
T Consensus 76 ~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~------ 149 (252)
T PRK12747 76 LDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATR------ 149 (252)
T ss_pred HHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccc------
Confidence 11111 2689999999864211 112 23456788877777776665542233577777754321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|..-.|+.++.-...+-+.+++.++ +..|+
T Consensus 150 ---~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gir 182 (252)
T PRK12747 150 ---ISLPDFIAYSMTKGAINTMTFTLAKQLG--ARGIT 182 (252)
T ss_pred ---cCCCCchhHHHHHHHHHHHHHHHHHHHh--HcCCE
Confidence 1223223467777767777777787765 34455
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.9e-05 Score=71.85 Aligned_cols=94 Identities=9% Similarity=0.098 Sum_probs=60.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchh---HHHHHHHhcccCCCCcceEEeCChhhhc----
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL---NGVKMELVDAAFPLLKGVVATTDAVEAC---- 79 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~---~~~~~dl~~~~~~~~~~v~~~~~~~~al---- 79 (320)
||+|+||+|++|++++..|++.|+ +|+++.++++.... +....| +....++.+++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~-------~V~~~~R~~~~~~~~~~~~~~~d-----------~~d~~~l~~a~~~~~ 62 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV-------PFLVASRSSSSSAGPNEKHVKFD-----------WLDEDTWDNPFSSDD 62 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC-------cEEEEeCCCccccCCCCcccccc-----------CCCHHHHHHHHhccc
Confidence 589999999999999999999887 78888886531110 111122 32233566666
Q ss_pred --CC-CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 80 --TG-VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 80 --~~-aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
++ +|.|+++++... .. ....+++++++++.+ - .++|..|
T Consensus 63 ~~~g~~d~v~~~~~~~~----~~-------~~~~~~~i~aa~~~g-v-~~~V~~S 104 (285)
T TIGR03649 63 GMEPEISAVYLVAPPIP----DL-------APPMIKFIDFARSKG-V-RRFVLLS 104 (285)
T ss_pred CcCCceeEEEEeCCCCC----Ch-------hHHHHHHHHHHHHcC-C-CEEEEee
Confidence 67 999999875321 11 134456777777765 2 2455554
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.9e-05 Score=62.38 Aligned_cols=65 Identities=20% Similarity=0.359 Sum_probs=47.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|+||+++| .|.+|+.++..|+..|+ +|..||+++ ++++ ++.+. ......+..++++++|+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-------~v~~~d~~~--~~~~----~~~~~------g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY-------EVTVYDRSP--EKAE----ALAEA------GAEVADSPAEAAEQADV 60 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT-------EEEEEESSH--HHHH----HHHHT------TEEEESSHHHHHHHBSE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC-------eEEeeccch--hhhh----hhHHh------hhhhhhhhhhHhhcccc
Confidence 57999999 79999999999999997 899999863 3332 23222 14555678899999999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||.+.
T Consensus 61 vi~~v 65 (163)
T PF03446_consen 61 VILCV 65 (163)
T ss_dssp EEE-S
T ss_pred eEeec
Confidence 99874
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.9e-05 Score=66.76 Aligned_cols=120 Identities=23% Similarity=0.190 Sum_probs=70.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCChhhh----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEA---- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~~~~a---- 78 (320)
++|+|+||+|++|.+++..|+++|. +|++++++. +..+....++....... ..++....+..++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 72 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-------QLVLAARNE--TRLASLAQELADHGGEALVVPTDVSDAEACERLIEAA 72 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 5799999999999999999998886 799999863 23332223332211100 1112111122222
Q ss_pred ---cCCCcEEEEeCCCCCCCC---C-CH---HHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcc
Q 020875 79 ---CTGVNIAVMVGGFPRKEG---M-ER---KDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPA 134 (320)
Q Consensus 79 ---l~~aDvVi~~ag~~~~~~---~-~r---~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~ 134 (320)
+.+.|+||+++|...... . +. .+.+..|+.....+++.+.++-. ...++|++|+..
T Consensus 73 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~ 139 (263)
T PRK06181 73 VARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLA 139 (263)
T ss_pred HHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccc
Confidence 236899999998643211 1 22 23477888888887777654311 124667776543
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.3e-05 Score=74.67 Aligned_cols=106 Identities=25% Similarity=0.325 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHH-------HHhc-ccC------CCCcce
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-------ELVD-AAF------PLLKGV 69 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~-------dl~~-~~~------~~~~~v 69 (320)
+..||+|+| +|.+|+.++..++..|+ +|+++|+++ +.++.... .+.. ... ....++
T Consensus 4 ~~~kV~VIG-aG~MG~gIA~~la~aG~-------~V~l~d~~~--e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 73 (503)
T TIGR02279 4 NVVTVAVIG-AGAMGAGIAQVAASAGH-------QVLLYDIRA--EALARAIAGIEARLNSLVTKGKLTAEECERTLKRL 73 (503)
T ss_pred CccEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Confidence 346999999 59999999999999998 899999974 33321110 1111 100 012456
Q ss_pred EEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 70 ~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
+.++++ +++++||+||.+.- .+...-+.+...+.+++++++ |+.||.+.+
T Consensus 74 ~~~~~~-~~l~~aDlVIEav~--------------E~~~vK~~vf~~l~~~~~~~~--IlasnTStl 123 (503)
T TIGR02279 74 IPVTDL-HALADAGLVIEAIV--------------ENLEVKKALFAQLEELCPADT--IIASNTSSL 123 (503)
T ss_pred EEeCCH-HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCe--EEEECCCCC
Confidence 677776 67899999999752 122344556666778875554 567776554
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.8e-05 Score=68.36 Aligned_cols=146 Identities=11% Similarity=0.098 Sum_probs=79.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--CC---CCcceEEeCChh----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FP---LLKGVVATTDAV---- 76 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~~---~~~~v~~~~~~~---- 76 (320)
++++||||+|++|++++..|+++|+ .|++++++. +.++....++.... .. ...++....+..
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~ 74 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY-------LVIATMRNP--EKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQL 74 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHH
Confidence 4799999999999999999999887 788888764 22322222222111 00 011222111111
Q ss_pred --hhcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 77 --EACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 77 --~al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+.+...|+||+++|..... ..+ ..+.+..|+.....+++.+ ++.. ...++++|+-...
T Consensus 75 ~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~vsS~~~~-------- 144 (280)
T PRK06914 75 VLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQK--SGKIINISSISGR-------- 144 (280)
T ss_pred HHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEECccccc--------
Confidence 2234679999999875421 111 2345667877766666664 4443 2456666543211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHH
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEK 171 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~ 171 (320)
.+.+..-.++.++.....+...++..
T Consensus 145 -~~~~~~~~Y~~sK~~~~~~~~~l~~~ 170 (280)
T PRK06914 145 -VGFPGLSPYVSSKYALEGFSESLRLE 170 (280)
T ss_pred -CCCCCCchhHHhHHHHHHHHHHHHHH
Confidence 12233334555555544555555544
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=9e-05 Score=69.97 Aligned_cols=110 Identities=16% Similarity=0.253 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHh--cccC------CCCcceEEeCCh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV--DAAF------PLLKGVVATTDA 75 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~--~~~~------~~~~~v~~~~~~ 75 (320)
+++||+|+| +|..|++++..|..++........+|.++.+++..+. +....++. +... +++.++..++++
T Consensus 10 ~~~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~-~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl 87 (365)
T PTZ00345 10 GPLKVSVIG-SGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEG-EKLSDIINTKHENVKYLPGIKLPDNIVAVSDL 87 (365)
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccc-hHHHHHHHhcCCCcccCCCCcCCCceEEecCH
Confidence 468999999 6999999999999886210000017888888642100 11222333 2221 234678888898
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhh--hcCCCeEEEEEc
Q 020875 76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQ--HAAPNCKVLVVA 131 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~--~~~~~~~viv~s 131 (320)
.++++++|+||++. |. +.++++++.++. +-+++..+|.++
T Consensus 88 ~eav~~aDiIvlAV--Ps--------------q~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 88 KEAVEDADLLIFVI--PH--------------QFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred HHHHhcCCEEEEEc--Ch--------------HHHHHHHHHhccccccCCCCEEEEEe
Confidence 89999999999874 21 345666777765 332344455443
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.2e-05 Score=74.31 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHH---HHHH-----hcccC------CCCcce
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV---KMEL-----VDAAF------PLLKGV 69 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~---~~dl-----~~~~~------~~~~~v 69 (320)
+..||+|+| +|.+|+.++..++..|+ +|+++|+++ +.++.. ..+. ..... .....+
T Consensus 6 ~i~~V~VIG-aG~MG~gIA~~la~aG~-------~V~l~D~~~--e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 75 (507)
T PRK08268 6 SIATVAVIG-AGAMGAGIAQVAAQAGH-------TVLLYDARA--GAAAAARDGIAARLAKLVEKGKLTAEQADAALARL 75 (507)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 347999999 59999999999999997 899999974 333221 1111 11100 012346
Q ss_pred EEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 70 ~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
+.++++ +++++||+||.+.- .+.+.-+.+...+.+.+++++ |++||.+
T Consensus 76 ~~~~~~-~~~~~aDlViEav~--------------E~~~vK~~vf~~l~~~~~~~a--ilasntS 123 (507)
T PRK08268 76 RPVEAL-ADLADCDLVVEAIV--------------ERLDVKQALFAQLEAIVSPDC--ILATNTS 123 (507)
T ss_pred EEeCCH-HHhCCCCEEEEcCc--------------ccHHHHHHHHHHHHhhCCCCc--EEEECCC
Confidence 777765 56899999998742 122333455556777775555 3445543
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.5e-05 Score=67.41 Aligned_cols=151 Identities=18% Similarity=0.171 Sum_probs=83.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhh----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEA---- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a---- 78 (320)
+.++|+|+||+|.+|++++..|+++|. +|++.++++. . .....++..... ....++....+..+.
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-------~Vi~~~r~~~--~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 83 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-------RVALLDRSED--V-AEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAV 83 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCHH--H-HHHHHHhhCCceEEEEecCCCHHHHHHHHHHH
Confidence 346899999999999999999999886 7899998642 1 111222211100 001112111112222
Q ss_pred ---cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 79 ---CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 79 ---l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+...|+||+.+|...... .+ ....+..|+.....+.+.+..+. ....++|++|+-... .+
T Consensus 84 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~---------~~ 154 (255)
T PRK06841 84 ISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGV---------VA 154 (255)
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhc---------cC
Confidence 346799999998743211 11 22356778777777777665431 023567777643211 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+..-.|+.++.....+-..+|+.+.
T Consensus 155 ~~~~~~Y~~sK~a~~~~~~~la~e~~ 180 (255)
T PRK06841 155 LERHVAYCASKAGVVGMTKVLALEWG 180 (255)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 22222455555554555666666654
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.3e-05 Score=66.41 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=89.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCChh----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAV---- 76 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~~~---- 76 (320)
+.++|.|+||+|++|++++..|++.|. ++++.+++. +.++....++.+..... ..++....+..
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-------~vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 80 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-------SVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALAD 80 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 357999999999999999999999886 788888763 33333333333221110 11222111222
Q ss_pred ---hhcCCCcEEEEeCCCCCC--CCCCHH---HHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 77 ---EACTGVNIAVMVGGFPRK--EGMERK---DVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 77 ---~al~~aDvVi~~ag~~~~--~~~~r~---~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+.+...|++|+++|.... ...+.. +.+..|+.....+.+.+..+- .....+|++|+.... .
T Consensus 81 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~---------~ 151 (255)
T PRK06113 81 FALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE---------N 151 (255)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEeccccc---------C
Confidence 223467999999986432 122222 346788887777777765321 022467777653311 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.+..-.|+.++.-...+.+.+++.+. +..|+.
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~~i~v 184 (255)
T PRK06113 152 KNINMTSYASSKAAASHLVRNMAFDLG--EKNIRV 184 (255)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 222222456665555556566666653 456663
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.6e-05 Score=68.60 Aligned_cols=104 Identities=24% Similarity=0.279 Sum_probs=61.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH-------HHHhcccC--C-----CCcceE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK-------MELVDAAF--P-----LLKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~-------~dl~~~~~--~-----~~~~v~ 70 (320)
..||+|+| +|.+|+.++..|+..|+ +|+++|+++ ++++... ..+..... . ....+.
T Consensus 4 ~~~V~vIG-~G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 73 (295)
T PLN02545 4 IKKVGVVG-AGQMGSGIAQLAAAAGM-------DVWLLDSDP--AALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR 73 (295)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE
Confidence 46899999 69999999999999886 899999874 2222100 01111100 0 012344
Q ss_pred EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
..++ .+++++||+||.+.- . +.+....+...+.+..+++++ ++||...
T Consensus 74 ~~~~-~~~~~~aD~Vieav~--e------------~~~~k~~v~~~l~~~~~~~~i--l~s~tS~ 121 (295)
T PLN02545 74 CTTN-LEELRDADFIIEAIV--E------------SEDLKKKLFSELDRICKPSAI--LASNTSS 121 (295)
T ss_pred eeCC-HHHhCCCCEEEEcCc--c------------CHHHHHHHHHHHHhhCCCCcE--EEECCCC
Confidence 4445 467899999999752 1 112334455556666545653 3344443
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.7e-05 Score=65.98 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
+.++++|+||+|.+|++++..|++.|. ++++.+++.. ..+.....++.+.... ...++....+..++
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-------~v~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 78 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-------DVALFDLRTD-DGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVA 78 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCcc-hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 446899999999999999999999987 7889988642 2223222333321110 11122221122222
Q ss_pred -----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHC
Q 020875 79 -----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+.+.. .....+|++|+.....
T Consensus 79 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------- 150 (254)
T PRK06114 79 RTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGII-------- 150 (254)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcC--------
Confidence 334699999999753211 11 23456677776655544443221 1235677776533211
Q ss_pred CCCCC--CcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPA--KNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~--~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.+. ...|+.++.-...+-+.+|+.+. +..|+.
T Consensus 151 -~~~~~~~~~Y~~sKaa~~~l~~~la~e~~--~~gi~v 185 (254)
T PRK06114 151 -VNRGLLQAHYNASKAGVIHLSKSLAMEWV--GRGIRV 185 (254)
T ss_pred -CCCCCCcchHHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 1111 12355555544456666776654 345653
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.3e-05 Score=70.02 Aligned_cols=108 Identities=21% Similarity=0.219 Sum_probs=62.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-C---CCcceEEeCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-P---LLKGVVATTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~---~~~~v~~~~~~~~al~ 80 (320)
+|||+|+| +|.+|+.++..|.+.|+ +|.++|+++..+.+......+.+... . ...++..+++. ++++
T Consensus 2 ~mkI~IiG-~G~mG~~~A~~L~~~G~-------~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLG-AGSIGCYLGGRLAAAGA-------DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhcCC-------cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 47899999 69999999999999987 79999985211111100000100000 0 01224444454 6789
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~ 137 (320)
++|+||++...+. ..++++.+.....++..++..+|..+..
T Consensus 73 ~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 73 TADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred CCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 9999999863221 1223344444433556677778876543
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.6e-05 Score=68.71 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=51.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH----H---HHhcccC-------CCCcceE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK----M---ELVDAAF-------PLLKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~----~---dl~~~~~-------~~~~~v~ 70 (320)
.+||+|+| +|.+|+.++..|+..|+ +|+++|+++ +.++... . .+.+... ....+++
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~-------~V~v~d~~~--~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGH-------EVRLWDADP--AAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR 71 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCC-------eeEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE
Confidence 35899999 69999999999999987 899999874 2222110 0 1111110 1123467
Q ss_pred EeCChhhhcCCCcEEEEeC
Q 020875 71 ATTDAVEACTGVNIAVMVG 89 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~a 89 (320)
.++++.+++++||+|+.+.
T Consensus 72 ~~~~~~~a~~~ad~Vi~av 90 (308)
T PRK06129 72 VTDSLADAVADADYVQESA 90 (308)
T ss_pred EECcHHHhhCCCCEEEECC
Confidence 7778888899999999875
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00021 Score=68.21 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=67.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC------------CCcceEEeC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP------------LLKGVVATT 73 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~------------~~~~v~~~~ 73 (320)
|||+|+| .|++|..++..++. |+ +|+.+|+++ ++++. +.....+ ....++.+.
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~-------~VigvD~d~--~kv~~----l~~g~~~~~e~~l~~~l~~~~~~l~~t~ 65 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NH-------EVVALDILP--SRVAM----LNDRISPIVDKEIQQFLQSDKIHFNATL 65 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CC-------cEEEEECCH--HHHHH----HHcCCCCCCCcCHHHHHHhCCCcEEEec
Confidence 5899999 79999999977664 76 899999974 33332 2221111 123455666
Q ss_pred ChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc-CcchhhHHH
Q 020875 74 DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPANTNALI 140 (320)
Q Consensus 74 ~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s-nP~~~~~~~ 140 (320)
+..++.++||+||++...+....... .+...+++.++.+.+. .++..+|+-| -|.+..-.+
T Consensus 66 ~~~~~~~~ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt~~l 127 (388)
T PRK15057 66 DKNEAYRDADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFTAAM 127 (388)
T ss_pred chhhhhcCCCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhc-CCCCEEEEeeecCCchHHHH
Confidence 67788899999999976653211111 1223344444555443 2444444443 466554444
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.1e-05 Score=67.09 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCCCC-CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChh
Q 020875 1 MAKEP-VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV 76 (320)
Q Consensus 1 m~~~~-~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~ 76 (320)
|..+. ++++|+||+|.+|..++..|+++|. .|+++++++ +.+.....++...... ...++....+..
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 71 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGW-------DLALVARSQ--DALEALAAELRSTGVKAAAYSIDLSNPEAIA 71 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhCCCcEEEEEccCCCHHHHH
Confidence 55544 5799999999999999999999886 799999864 2232222222211100 112222212222
Q ss_pred hh-------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCc
Q 020875 77 EA-------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANP 133 (320)
Q Consensus 77 ~a-------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP 133 (320)
.+ +...|+||+++|..... ..+ ....+..|+.....+.+. +.+.. ..++|++|+.
T Consensus 72 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~ 143 (241)
T PRK07454 72 PGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG--GGLIINVSSI 143 (241)
T ss_pred HHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CcEEEEEccH
Confidence 22 23589999999874321 111 234566777655554444 44432 3567777754
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.9e-05 Score=68.66 Aligned_cols=152 Identities=15% Similarity=0.095 Sum_probs=82.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++++|+||+|++|.+++..|++.|. .+++.++.. .+.+......+...... ...++....+..+++
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 80 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF-------DVAVHYNRS-RDEAEALAAEIRALGRRAVALQADLADEAEVRALVAR 80 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999999886 677766532 12222222222211110 111222222222222
Q ss_pred -----CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHHHHCC
Q 020875 80 -----TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
...|+|||+||..... ..+ ....+..|+.....+++.+.++.. ...++++++... . . .
T Consensus 81 ~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~-~-----~---~ 151 (258)
T PRK09134 81 ASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQR-V-----W---N 151 (258)
T ss_pred HHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchh-h-----c---C
Confidence 3479999999864321 112 244677888877777777665431 124555554321 0 0 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
..|....|+.++.....+-+.+++.++
T Consensus 152 ~~p~~~~Y~~sK~a~~~~~~~la~~~~ 178 (258)
T PRK09134 152 LNPDFLSYTLSKAALWTATRTLAQALA 178 (258)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 112112356666555566666777664
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00013 Score=66.07 Aligned_cols=154 Identities=12% Similarity=0.099 Sum_probs=85.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChhh----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVE---- 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~---- 77 (320)
.++++|+||+|.+|++++..|+..|. .|++++++. +.++....++.+... ....++....+..+
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-------KVAILDRNQ--EKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQ 80 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 36899999999999999999999887 799999864 333333333322110 01112211111111
Q ss_pred ---hcCCCcEEEEeCCCCCCC------------------CCC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEE
Q 020875 78 ---ACTGVNIAVMVGGFPRKE------------------GME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLV 129 (320)
Q Consensus 78 ---al~~aDvVi~~ag~~~~~------------------~~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv 129 (320)
.+...|++|++||..... ..+ ....+..|+.... .+.+.+.+.. .+.+|+
T Consensus 81 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~ii~ 158 (278)
T PRK08277 81 ILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRK--GGNIIN 158 (278)
T ss_pred HHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEE
Confidence 234789999999853211 011 2234556665444 4445554432 356777
Q ss_pred EcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 130 VANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 130 ~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+|+-... ...+..-.|+.++.-...+.+.++..+.- ..++
T Consensus 159 isS~~~~---------~~~~~~~~Y~~sK~a~~~l~~~la~e~~~--~gir 198 (278)
T PRK08277 159 ISSMNAF---------TPLTKVPAYSAAKAAISNFTQWLAVHFAK--VGIR 198 (278)
T ss_pred Eccchhc---------CCCCCCchhHHHHHHHHHHHHHHHHHhCc--cCeE
Confidence 7743211 12222224666666555666677777653 4555
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.5e-05 Score=67.28 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=82.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
++.++|+||+|++|++++..|+.+|. +|++.+++. +.+.....++...... ...+++...+..++
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF-------PVALGARRV--EKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQ 80 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 35799999999999999999999887 788888753 2232222222111100 01122222222222
Q ss_pred ----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 ----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+...|+||+.||...... .+ ..+.+..|+.....+.+.+.... ....++|++|+-.. ..
T Consensus 81 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~---------~~ 151 (274)
T PRK07775 81 AEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVA---------LR 151 (274)
T ss_pred HHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHh---------cC
Confidence 346899999998743211 12 22345677776766666653211 01245666665321 11
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
+.|....|+.++.....+...+++.+
T Consensus 152 ~~~~~~~Y~~sK~a~~~l~~~~~~~~ 177 (274)
T PRK07775 152 QRPHMGAYGAAKAGLEAMVTNLQMEL 177 (274)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 22322346666666666777777665
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=97.96 E-value=8e-05 Score=65.43 Aligned_cols=154 Identities=15% Similarity=0.139 Sum_probs=86.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-----
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC----- 79 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al----- 79 (320)
|+|+||+|++|++++..|+++|+ ++++++++.. +.+.....++.+.... ...++....++.+++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~-------~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA-------KVIITYRSSE-EGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEE 72 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCch-hHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 57999999999999999999887 7888887531 2233333333322111 111222222222333
Q ss_pred --CCCcEEEEeCCCCCCC---C---CCHHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 80 --TGVNIAVMVGGFPRKE---G---MERKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 80 --~~aDvVi~~ag~~~~~---~---~~r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
...|+||+.+|..... . ....+.+..|+.....+.+.+.++.. ...+++++|..... .+.|
T Consensus 73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~---------~g~~ 143 (239)
T TIGR01830 73 ELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGL---------MGNA 143 (239)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcccc---------CCCC
Confidence 3469999999864321 1 12344677888888888887765421 23467777654321 1223
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
....++.++.-...+...+++.++ +..++
T Consensus 144 ~~~~y~~~k~a~~~~~~~l~~~~~--~~g~~ 172 (239)
T TIGR01830 144 GQANYAASKAGVIGFTKSLAKELA--SRNIT 172 (239)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHh--hcCeE
Confidence 222455555544455555666654 23454
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.8e-05 Score=71.18 Aligned_cols=110 Identities=18% Similarity=0.166 Sum_probs=67.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--------------C
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--------------L 66 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~ 66 (320)
|+ ++||+|+| .|++|..++..|++.|+ +|..+|+++ ++++. +.....+. .
T Consensus 1 m~--~~kI~VIG-lG~~G~~~A~~La~~G~-------~V~~~D~~~--~~v~~----l~~g~~~~~e~~l~~~l~~~~~~ 64 (415)
T PRK11064 1 MS--FETISVIG-LGYIGLPTAAAFASRQK-------QVIGVDINQ--HAVDT----INRGEIHIVEPDLDMVVKTAVEG 64 (415)
T ss_pred CC--ccEEEEEC-cchhhHHHHHHHHhCCC-------EEEEEeCCH--HHHHH----HHCCCCCcCCCCHHHHHHHHhhc
Confidence 55 57999999 79999999999999997 899999874 34432 21111110 1
Q ss_pred cceEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc-Ccchh
Q 020875 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPANT 136 (320)
Q Consensus 67 ~~v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s-nP~~~ 136 (320)
..+..+++ +++||+||++...|.....+ .++..+...++.+.++..++.++|.-| .|.+.
T Consensus 65 g~l~~~~~----~~~aDvvii~vptp~~~~~~------~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 65 GYLRATTT----PEPADAFLIAVPTPFKGDHE------PDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred Cceeeecc----cccCCEEEEEcCCCCCCCCC------cChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 22333332 45899999998877533221 123344555556655543445555554 45544
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.5e-05 Score=65.85 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
|..+..+++|+||+|++|..++..|+++|. .|+++++++
T Consensus 1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~-------~vi~~~r~~ 39 (253)
T PRK08217 1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGA-------KLALIDLNQ 39 (253)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 666667999999999999999999999886 788999864
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=65.21 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=78.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCChhhhcC-C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEACT-G 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~~~~al~-~ 81 (320)
++|+||||+|.+|++++..|++.|. .+++.+++. +.+.....+........ ..++....+..+++. +
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-------NVIAGVQIA--PQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 4799999999999999999999886 788888753 22221111111111111 112222223444454 8
Q ss_pred CcEEEEeCCCCCCCC---CCH---HHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCC
Q 020875 82 VNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK 151 (320)
Q Consensus 82 aDvVi~~ag~~~~~~---~~r---~~~~~~n~~~~~~----i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~ 151 (320)
.|+||+.||...... .+. ...+..|+..... +.+.+.+.. . .++|++|+-... .+.|..
T Consensus 74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~-~~iv~~SS~~~~---------~~~~~~ 142 (257)
T PRK09291 74 VDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARG-K-GKVVFTSSMAGL---------ITGPFT 142 (257)
T ss_pred CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-C-ceEEEEcChhhc---------cCCCCc
Confidence 999999998753211 112 2244556654444 344444443 2 467777643211 112222
Q ss_pred cEEEeehhhHHHHHHHHHHHc
Q 020875 152 NITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l 172 (320)
..++.++....++...+++.+
T Consensus 143 ~~Y~~sK~a~~~~~~~l~~~~ 163 (257)
T PRK09291 143 GAYCASKHALEAIAEAMHAEL 163 (257)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 245555555555555555543
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=65.32 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=86.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh-
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE- 77 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~- 77 (320)
..+.++|+|+||+|++|.+++..|++.|. .|++++++. +.++....++.+.... ...++....+..+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 75 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-------HVIVSSRKL--DGCQAVADAIVAAGGKAEALACHIGEMEQIDAL 75 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 33456899999999999999999999886 799999863 3333333333321110 0011111111211
Q ss_pred ------hcCCCcEEEEeCCCCC--CC--CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHH
Q 020875 78 ------ACTGVNIAVMVGGFPR--KE--GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILK 142 (320)
Q Consensus 78 ------al~~aDvVi~~ag~~~--~~--~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~ 142 (320)
.+...|++|+.+|... .+ ..+ ....+..|+.....+.+.+.++. ....+++++|+....
T Consensus 76 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~------ 149 (252)
T PRK07035 76 FAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGV------ 149 (252)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhc------
Confidence 2345899999998521 11 122 22356677776665555543321 023566666643211
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
...+..-.|+.++.-...+...+++.++ +..|+
T Consensus 150 ---~~~~~~~~Y~~sK~al~~~~~~l~~e~~--~~gi~ 182 (252)
T PRK07035 150 ---SPGDFQGIYSITKAAVISMTKAFAKECA--PFGIR 182 (252)
T ss_pred ---CCCCCCcchHHHHHHHHHHHHHHHHHHh--hcCEE
Confidence 1122222456665555556666666654 34555
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=66.53 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=62.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCCCCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|||+|+| +|.+|+.++..|.+.|+ +|.++++++ +.++....+-... ............+..+ ++++|+
T Consensus 1 m~I~IiG-~G~~G~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~ 69 (304)
T PRK06522 1 MKIAILG-AGAIGGLFGAALAQAGH-------DVTLVARRG--AHLDALNENGLRLEDGEITVPVLAADDPAE-LGPQDL 69 (304)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCh--HHHHHHHHcCCcccCCceeecccCCCChhH-cCCCCE
Confidence 6899999 59999999999999886 899999853 2222211100000 0000011112233433 489999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
||++.... ...++++.+..+-.++..+|...|.++....+
T Consensus 70 vila~k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l 109 (304)
T PRK06522 70 VILAVKAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLEEL 109 (304)
T ss_pred EEEecccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHH
Confidence 99986321 12334445554433556788888987654433
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=68.04 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=89.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CC-CcceEEeCC-------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PL-LKGVVATTD------- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~-~~~v~~~~~------- 74 (320)
...++||||+|.+|.+++..|+++|. +|+++++++ ++++....++..... .. ...+..+.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-------~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 123 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-------NLVLVARNP--DKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKR 123 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------CEEEEECCH--HHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHH
Confidence 36899999999999999999999987 799999874 455544445532110 00 001111111
Q ss_pred hhhhcC--CCcEEEEeCCCCCC---C--CCCH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHH
Q 020875 75 AVEACT--GVNIAVMVGGFPRK---E--GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 75 ~~~al~--~aDvVi~~ag~~~~---~--~~~r---~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~ 140 (320)
..+.+. +.|++|+.||.... + ..+. .+.+..|+.....+.+.+ .+.. .+.+|++|+-....
T Consensus 124 l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~g~IV~iSS~a~~~--- 198 (320)
T PLN02780 124 IKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGAIINIGSGAAIV--- 198 (320)
T ss_pred HHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CcEEEEEechhhcc---
Confidence 122333 45699999987431 1 1122 245677877666655554 3332 35677777532110
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+..|..-.|+.|+.-...+-..++..+. +..|+.
T Consensus 199 ----~~~~p~~~~Y~aSKaal~~~~~~L~~El~--~~gI~V 233 (320)
T PLN02780 199 ----IPSDPLYAVYAATKAYIDQFSRCLYVEYK--KSGIDV 233 (320)
T ss_pred ----CCCCccchHHHHHHHHHHHHHHHHHHHHh--ccCeEE
Confidence 01122223567776666667777777764 345553
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00016 Score=67.56 Aligned_cols=150 Identities=16% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~~~~a-- 78 (320)
+.++|+||||+|.+|.+++..|+++|. +|++.++++ ++++....++....... ..++....+..++
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-------~Vvl~~R~~--~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-------RLVLAARDE--EALQAVAEECRALGAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 457899999999999999999999987 899999864 44443333443221110 1122221222222
Q ss_pred -----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~----~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+...|++|+.||...... .+ ..+.+..|+.....+. +.+++.. ...+|++++....
T Consensus 77 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~--~g~iV~isS~~~~------- 147 (330)
T PRK06139 77 QAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG--HGIFINMISLGGF------- 147 (330)
T ss_pred HHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--CCEEEEEcChhhc-------
Confidence 246899999998743211 11 2335667766554444 4444432 3566666643211
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|..-.|+.++.-...+-..++..+.
T Consensus 148 --~~~p~~~~Y~asKaal~~~~~sL~~El~ 175 (330)
T PRK06139 148 --AAQPYAAAYSASKFGLRGFSEALRGELA 175 (330)
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHhC
Confidence 1223222456665554555566666654
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.5e-06 Score=70.03 Aligned_cols=111 Identities=20% Similarity=0.308 Sum_probs=78.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchh----HHHHHHHhcccC------C---------C
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL----NGVKMELVDAAF------P---------L 65 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~----~~~~~dl~~~~~------~---------~ 65 (320)
...|+|+| +|.+|+-++...+..|+ .|.|+|.+++ .+ ++....+.+.+. + .
T Consensus 11 ~~~V~ivG-aG~MGSGIAQv~a~sg~-------~V~l~d~~~~--aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~ 80 (298)
T KOG2304|consen 11 IKNVAIVG-AGQMGSGIAQVAATSGL-------NVWLVDANED--ALSRATKAISSSLKRVAKKKKADDPVALEEFVDDT 80 (298)
T ss_pred ccceEEEc-ccccchhHHHHHHhcCC-------ceEEecCCHH--HHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHH
Confidence 46899999 59999999999999998 8999999752 22 122222222111 1 1
Q ss_pred CcceEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh-hHHHH
Q 020875 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-NALIL 141 (320)
Q Consensus 66 ~~~v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~-~~~~~ 141 (320)
...+..+++...++.|+|+||-+ ..+|+++-+++.+.+.+.|++++ |..||...+ ++.+.
T Consensus 81 l~ri~~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~--il~tNTSSl~lt~ia 141 (298)
T KOG2304|consen 81 LDRIKTSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSST--ILATNTSSLSLTDIA 141 (298)
T ss_pred HHHHHHcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccce--EEeecccceeHHHHH
Confidence 23456677888888899987753 46789999999999999996554 677887654 44443
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.4e-05 Score=67.05 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=62.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchh-HHHHHHHhcccCCCCcceEEeCChhhhcC---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL-NGVKMELVDAAFPLLKGVVATTDAVEACT--- 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~-~~~~~dl~~~~~~~~~~v~~~~~~~~al~--- 80 (320)
.++|+|+||+|.+|.+++..|++.|+ +|++++++...... +....|+.+. .+..++++
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~-------~v~~~~r~~~~~~~~~~~~~D~~~~-----------~~~~~~~~~~~ 64 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH-------QVIGIARSAIDDFPGELFACDLADI-----------EQTAATLAQIN 64 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-------EEEEEeCCcccccCceEEEeeCCCH-----------HHHHHHHHHHH
Confidence 35899999999999999999999886 78999886421100 0001111111 11122222
Q ss_pred ---CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcC
Q 020875 81 ---GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 81 ---~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~sn 132 (320)
+.|+||+++|...... .+ ....+..|+.....+ .+.+++.. ..+++++|.
T Consensus 65 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS 127 (234)
T PRK07577 65 EIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLRE--QGRIVNICS 127 (234)
T ss_pred HhCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcc
Confidence 6899999998743211 11 123455565554444 44444443 346777764
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.1e-05 Score=69.94 Aligned_cols=171 Identities=16% Similarity=0.103 Sum_probs=93.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchh-HHHHHHHhcccC-------C----CCcceEEe--
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL-NGVKMELVDAAF-------P----LLKGVVAT-- 72 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~-~~~~~dl~~~~~-------~----~~~~v~~~-- 72 (320)
+|+||||+|++|++++..|+.+|.. .+|+++.++.+.+.. +.....+..... . ...++...
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~-----~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 75 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQ-----AKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRL 75 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCC-----CEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccC
Confidence 5899999999999999999988741 168888876432111 000011110000 0 01111110
Q ss_pred ----CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH----HHHH
Q 020875 73 ----TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEF 144 (320)
Q Consensus 73 ----~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~----~~~~ 144 (320)
....+..+++|+|||+|+... ...+..++...|+....++++.+.+.. .. .++++|.- .+.... ..+.
T Consensus 76 gl~~~~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~-~~-~~v~iSS~-~v~~~~~~~~~~~~ 151 (367)
T TIGR01746 76 GLSDAEWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGR-AK-PLHYVSTI-SVLAAIDLSTVTED 151 (367)
T ss_pred CcCHHHHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCC-Cc-eEEEEccc-cccCCcCCCCcccc
Confidence 123344578999999998643 123445667899999999999988764 32 35555532 111100 0000
Q ss_pred CC---CC-CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 145 AP---SI-PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 145 ~~---~~-~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
.. .. +....++.++....++....++. |++..-++...|.|.
T Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~ 197 (367)
T TIGR01746 152 DAIVTPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGN 197 (367)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeec
Confidence 00 00 00113555666555555544443 777777776667774
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=65.23 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=85.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCC----CCcceEEeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP----LLKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~----~~~~v~~~~~~~~al 79 (320)
.++|+|+||+|.+|.+++..|++.|+ +|++.++++ ++++....++... ... ...++....+..+++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-------~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-------IVIAADIDK--EALNELLESLGKEFKSKKLSLVELDITDQESLEEFL 74 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEecCh--HHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHH
Confidence 46899999999999999999999887 788888763 3333333333211 000 012332222333333
Q ss_pred C-------CCcEEEEeCCCCCC----C--CCC---HHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhHH
Q 020875 80 T-------GVNIAVMVGGFPRK----E--GME---RKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNAL 139 (320)
Q Consensus 80 ~-------~aDvVi~~ag~~~~----~--~~~---r~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~~ 139 (320)
+ ..|+||+.|+.... + ..+ ....+..|+. .++.+.+.+++.. ..++|++|.-......
T Consensus 75 ~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~~ 152 (256)
T PRK09186 75 SKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQG--GGNLVNISSIYGVVAP 152 (256)
T ss_pred HHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC--CceEEEEechhhhccc
Confidence 3 37999999864321 1 112 1223445554 4445555555443 3467776642211110
Q ss_pred HHHHHCCCCCCC--cEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 140 ILKEFAPSIPAK--NITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 140 ~~~~~~~~~~~~--~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.... ..+.+.. ..|+.++.....+.+.+++.+. +..++
T Consensus 153 ~~~~-~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~--~~~i~ 192 (256)
T PRK09186 153 KFEI-YEGTSMTSPVEYAAIKAGIIHLTKYLAKYFK--DSNIR 192 (256)
T ss_pred cchh-ccccccCCcchhHHHHHHHHHHHHHHHHHhC--cCCeE
Confidence 0000 0111111 1366666666666666777653 44555
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.2e-05 Score=67.31 Aligned_cols=157 Identities=11% Similarity=0.048 Sum_probs=85.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE---- 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~---- 77 (320)
.++++||||+|.+|.+++..|++.|. +|++++++ +.+.....++.+.... ...++....+..+
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~-------~vi~~~r~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-------YVLAVDIA---EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCc---HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 46899999999999999999999886 89999986 2333333334322111 1112221111222
Q ss_pred ---hcCCCcEEEEeCCCCCCCC----CCH---HHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 78 ---ACTGVNIAVMVGGFPRKEG----MER---KDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 78 ---al~~aDvVi~~ag~~~~~~----~~r---~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
.+...|++|+.||.....+ .+. ...+..|+.....+.+.+..+- ..++++|++|+.... .
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~ 146 (272)
T PRK08589 76 IKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQ---------A 146 (272)
T ss_pred HHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhc---------C
Confidence 2335799999998753211 122 2344566654444433333221 012567777754321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+.+..-.|+.++.-...+.+.+|+.++ +..|+..
T Consensus 147 ~~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~v~ 180 (272)
T PRK08589 147 ADLYRSGYNAAKGAVINFTKSIAIEYG--RDGIRAN 180 (272)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence 122222456666555667777787764 4456643
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.1e-05 Score=67.28 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=64.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhh-------
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVE------- 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~------- 77 (320)
++++||||+|++|.+++..|++.|+ +|++.++++ +.+.. +..... ....++....+..+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-------EVWATARKA--EDVEA----LAAAGFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH----HHHCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999887 889998863 22221 111110 00011111111111
Q ss_pred hcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCc
Q 020875 78 ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANP 133 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP 133 (320)
...+.|+||+.||..... ..+ ....+..|+.....+.+.+..... ....++++++-
T Consensus 69 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~ 131 (274)
T PRK05693 69 EHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSV 131 (274)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCc
Confidence 224789999999864311 112 233566777766555555433210 12456666653
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=97.91 E-value=5e-05 Score=67.04 Aligned_cols=101 Identities=20% Similarity=0.194 Sum_probs=63.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhhcCCCcEEE
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGVNIAV 86 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~~aDvVi 86 (320)
|+|+||+|.+|++++..|+..++ +|.++-++.+.+.+ ..+.+.... ...++....++.++|+|+|.||
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-------~V~~l~R~~~~~~~----~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~ 69 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-------SVRALVRDPSSDRA----QQLQALGAEVVEADYDDPESLVAALKGVDAVF 69 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-------CEEEEESSSHHHHH----HHHHHTTTEEEES-TT-HHHHHHHHTTCSEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCC-------CcEEEEeccchhhh----hhhhcccceEeecccCCHHHHHHHHcCCceEE
Confidence 78999999999999999999776 68877776422211 122222111 1122223346788999999999
Q ss_pred EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 87 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 87 ~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
++.+... ..+ .+...++++++++.+ ++.++.|.
T Consensus 70 ~~~~~~~---~~~-------~~~~~~li~Aa~~ag---Vk~~v~ss 102 (233)
T PF05368_consen 70 SVTPPSH---PSE-------LEQQKNLIDAAKAAG---VKHFVPSS 102 (233)
T ss_dssp EESSCSC---CCH-------HHHHHHHHHHHHHHT----SEEEESE
T ss_pred eecCcch---hhh-------hhhhhhHHHhhhccc---cceEEEEE
Confidence 9876432 111 245577888888875 55556653
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.6e-05 Score=68.20 Aligned_cols=153 Identities=17% Similarity=0.165 Sum_probs=84.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccch---hHHHHHHHhcccCCCCcceE-EeCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA---LNGVKMELVDAAFPLLKGVV-ATTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~---~~~~~~dl~~~~~~~~~~v~-~~~~~~~al~ 80 (320)
.++|+|+||+|.+|++++..|++.|. +|+++++++.... +.....|+.+.. .+. ......+.+.
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~r~~~~~~~~~~~~~~~D~~~~~-----~~~~~~~~~~~~~~ 76 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA-------RVVTTARSRPDDLPEGVEFVAADLTTAE-----GCAAVARAVLERLG 76 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC-------EEEEEeCChhhhcCCceeEEecCCCCHH-----HHHHHHHHHHHHcC
Confidence 37899999999999999999999887 7999998642110 000111222111 000 0001223345
Q ss_pred CCcEEEEeCCCCCCC-----CCC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 81 GVNIAVMVGGFPRKE-----GME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~-----~~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
..|+||+.||..... ..+ ..+.+..|+.....+ .+.+++.. ..++|++|+.... ...
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~ii~isS~~~~---------~~~ 145 (260)
T PRK06523 77 GVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG--SGVIIHVTSIQRR---------LPL 145 (260)
T ss_pred CCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CcEEEEEeccccc---------CCC
Confidence 789999999864211 011 234556776655444 45555443 2567777764321 112
Q ss_pred C-CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 149 P-AKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 149 ~-~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+ ....|+.++.-...+-..+++.++ +..|+..
T Consensus 146 ~~~~~~Y~~sK~a~~~l~~~~a~~~~--~~gi~v~ 178 (260)
T PRK06523 146 PESTTAYAAAKAALSTYSKSLSKEVA--PKGVRVN 178 (260)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEEE
Confidence 2 222466666655566666776654 3456543
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00015 Score=64.29 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=86.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc----
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC---- 79 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al---- 79 (320)
.++|+||+|++|++++..|++.|. .+++.+++. .+++.....++...... ...++....+..+++
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~-------~vv~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGY-------AVCLNYLRN-RDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVD 75 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-------eEEEecCCC-HHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHH
Confidence 699999999999999999999886 677766432 22333222223221110 111222222233333
Q ss_pred ---CCCcEEEEeCCCCCCC----CCC---HHHHHHhhHHHHHHHHHHHhhhc-----CCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 ---TGVNIAVMVGGFPRKE----GME---RKDVMSKNVSIYKAQASALEQHA-----APNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 ---~~aDvVi~~ag~~~~~----~~~---r~~~~~~n~~~~~~i~~~i~~~~-----~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|+|||++|..... ..+ ..+.+..|+.....+.+.+.+.- ..++.++++|+....
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~-------- 147 (248)
T PRK06123 76 RELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAAR-------- 147 (248)
T ss_pred HHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhc--------
Confidence 3679999999875321 112 22457788877666655554431 113567777764321
Q ss_pred CCCCCCC-cEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAK-NITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~-~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+.. -.|+.++.....+...+++.+. +..++.
T Consensus 148 -~~~~~~~~~Y~~sKaa~~~~~~~la~~~~--~~~i~v 182 (248)
T PRK06123 148 -LGSPGEYIDYAASKGAIDTMTIGLAKEVA--AEGIRV 182 (248)
T ss_pred -CCCCCCccchHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 112221 1367776666677777887763 344553
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00094 Score=58.90 Aligned_cols=152 Identities=15% Similarity=0.103 Sum_probs=83.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC----CCcceEEe--CChh--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVAT--TDAV-- 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~~--~~~~-- 76 (320)
.+++.|+||+|++|.+++..|+++|. +|+++++++ ++++....++.....+ ...++... .+..
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA-------TVILVARHQ--KKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQF 76 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-------EEEEEeCCh--HHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHH
Confidence 46899999999999999999999886 799999874 3333333333211100 01122111 1111
Q ss_pred -----hhc-CCCcEEEEeCCCCCC--C--CCCH---HHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHH
Q 020875 77 -----EAC-TGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALIL 141 (320)
Q Consensus 77 -----~al-~~aDvVi~~ag~~~~--~--~~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~ 141 (320)
+.+ ...|+||++||.... + ..+. .+.+..|+.....+.+.+.+.- ...+.++++++....
T Consensus 77 ~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~----- 151 (239)
T PRK08703 77 AATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE----- 151 (239)
T ss_pred HHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc-----
Confidence 112 467999999986421 1 1122 2345677766555544443321 023566666643211
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCC
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNV 174 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v 174 (320)
.+.+..--|+.++.-...+-+.+++.++-
T Consensus 152 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~~ 180 (239)
T PRK08703 152 ----TPKAYWGGFGASKAALNYLCKVAADEWER 180 (239)
T ss_pred ----cCCCCccchHHhHHHHHHHHHHHHHHhcc
Confidence 11221124666666556666667777653
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=5e-05 Score=66.54 Aligned_cols=156 Identities=10% Similarity=0.054 Sum_probs=82.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCCh---hhhc--C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA---VEAC--T 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~---~~al--~ 80 (320)
+++.|+||+|++|++++..|++.|. +|+++++++. .... ..++.+.. ....++....+. .+.+ .
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-------~V~~~~r~~~--~~~~-~~~~~~~~-~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-------QVTATVRGPQ--QDTA-LQALPGVH-IEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-------EEEEEeCCCc--chHH-HHhccccc-eEEcCCCCHHHHHHHHHHhhcC
Confidence 5799999999999999999999886 8999998752 2211 11111110 011122111111 2222 2
Q ss_pred CCcEEEEeCCCCCCC-----CCCHH---HHHHhhHHHHHHHHHHHhhhcCCC-eEEEEEcCcchhhHHHHHHHCCCCCCC
Q 020875 81 GVNIAVMVGGFPRKE-----GMERK---DVMSKNVSIYKAQASALEQHAAPN-CKVLVVANPANTNALILKEFAPSIPAK 151 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~-----~~~r~---~~~~~n~~~~~~i~~~i~~~~~~~-~~viv~snP~~~~~~~~~~~~~~~~~~ 151 (320)
..|+||+.+|..... ..+.. ..+..|+.....+.+.+.++...+ ..+++.+...... .. +.....
T Consensus 71 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~----~~--~~~~~~ 144 (225)
T PRK08177 71 RFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSV----EL--PDGGEM 144 (225)
T ss_pred CCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCcccc----cc--CCCCCc
Confidence 589999999874211 11222 234456555555555554432112 3445454322111 00 000111
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..|+.++.....+.+.+++.++- ..++
T Consensus 145 ~~Y~~sK~a~~~~~~~l~~e~~~--~~i~ 171 (225)
T PRK08177 145 PLYKASKAALNSMTRSFVAELGE--PTLT 171 (225)
T ss_pred cchHHHHHHHHHHHHHHHHHhhc--CCeE
Confidence 24677777777777778877653 4555
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.8e-05 Score=74.72 Aligned_cols=112 Identities=18% Similarity=0.073 Sum_probs=67.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH-HHHhc-----------ccC---------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK-MELVD-----------AAF--------- 63 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~-~dl~~-----------~~~--------- 63 (320)
.++|.||||+||+|.+++..|+..+.- ..+|.++.+..+.+.+.... .++.+ ...
T Consensus 119 ~k~VlVTGaTGFLGk~LlekLLr~~~~----v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki 194 (605)
T PLN02503 119 GKNFLITGATGFLAKVLIEKILRTNPD----VGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKL 194 (605)
T ss_pred CCEEEEcCCchHHHHHHHHHHHHhCCC----CcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccE
Confidence 479999999999999999999875421 12677776643221111110 11111 000
Q ss_pred -CCCcceEEe-----C-ChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhc
Q 020875 64 -PLLKGVVAT-----T-DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121 (320)
Q Consensus 64 -~~~~~v~~~-----~-~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~ 121 (320)
+...++... . +.....+++|+|||+|+... ...+..+....|+..+.++++.+.+..
T Consensus 195 ~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~ 258 (605)
T PLN02503 195 VPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK 258 (605)
T ss_pred EEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 011222211 0 12223467999999998653 234566778899999999999998763
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.1e-05 Score=73.30 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=93.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA------ 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (320)
.++++||||+|.+|.+++..|++.|. .|++.++++ ++++.....+.........++....+..+.
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 339 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD-------RLLIIDRDA--EGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQA 339 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999986 799999864 333322222211000011122211122222
Q ss_pred -cCCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCC
Q 020875 79 -CTGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (320)
Q Consensus 79 -l~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~ 150 (320)
+...|++|+.||.... + ..+ ....+..|+.....+.+.+..+-.....+|++|+.... .+.|.
T Consensus 340 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~~ 410 (520)
T PRK06484 340 RWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASL---------LALPP 410 (520)
T ss_pred HcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhc---------CCCCC
Confidence 3457999999997421 1 122 33467788887777777665543234677888764321 12333
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.-.|+.++.-...+-+.+++.+. +..|+..
T Consensus 411 ~~~Y~asKaal~~l~~~la~e~~--~~gI~vn 440 (520)
T PRK06484 411 RNAYCASKAAVTMLSRSLACEWA--PAGIRVN 440 (520)
T ss_pred CchhHHHHHHHHHHHHHHHHHhh--hhCeEEE
Confidence 33567777666677777777764 3456533
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0005 Score=62.04 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=86.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC----CcceEEeCC-------
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----LKGVVATTD------- 74 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~----~~~v~~~~~------- 74 (320)
++++||||+|.+|.+++..|++.|. .|+++++++ +.++....++....... ..++....+
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-------~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-------ELFLTDRDA--DGLAQTVADARALGGTVPEHRALDISDYDAVAAFAAD 71 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence 4799999999999999999999886 788998864 33333333332211100 011111111
Q ss_pred hhhhcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEEcCcchhhHHHHHHHC
Q 020875 75 AVEACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
..+.+...|+||+.+|..... ..+ -...+..|+.....+.+.+..+- .....+|++|.....
T Consensus 72 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~--------- 142 (272)
T PRK07832 72 IHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGL--------- 142 (272)
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccccc---------
Confidence 112245689999999864311 112 23456778777777776654321 123567777754321
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.++.++.....+...++..+. +.+|+.
T Consensus 143 ~~~~~~~~Y~~sK~a~~~~~~~l~~e~~--~~~i~v 176 (272)
T PRK07832 143 VALPWHAAYSASKFGLRGLSEVLRFDLA--RHGIGV 176 (272)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 1222222456665544456666665543 344553
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.7e-05 Score=74.00 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=81.2
Q ss_pred CCCCEEEEE----cCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-chhHHH----HHHHhcccCCCCcceEE-e
Q 020875 3 KEPVRVLVT----GAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGV----KMELVDAAFPLLKGVVA-T 72 (320)
Q Consensus 3 ~~~~kI~Ii----GA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-~~~~~~----~~dl~~~~~~~~~~v~~-~ 72 (320)
..++||+|| ||+||+|++++..|+++|+ +|++++++... ..+... ..++.... ..-+.. .
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~---v~~v~~D~ 119 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-------EVTLFTRGKEPSQKMKKEPFSRFSELSSAG---VKTVWGDP 119 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCC-------EEEEEecCCcchhhhccCchhhhhHhhhcC---ceEEEecH
Confidence 345799999 9999999999999999987 89999886421 000000 00111110 000111 0
Q ss_pred CChhhhc--CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCC-
Q 020875 73 TDAVEAC--TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP- 149 (320)
Q Consensus 73 ~~~~~al--~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~- 149 (320)
.++.+.+ .++|+||++++. +...++.+++++++.+ .. ++|.+|.. .+. - . ....|
T Consensus 120 ~d~~~~~~~~~~d~Vi~~~~~--------------~~~~~~~ll~aa~~~g-vk-r~V~~SS~-~vy--g--~-~~~~p~ 177 (378)
T PLN00016 120 ADVKSKVAGAGFDVVYDNNGK--------------DLDEVEPVADWAKSPG-LK-QFLFCSSA-GVY--K--K-SDEPPH 177 (378)
T ss_pred HHHHhhhccCCccEEEeCCCC--------------CHHHHHHHHHHHHHcC-CC-EEEEEccH-hhc--C--C-CCCCCC
Confidence 1223333 579999998652 1234667788887764 22 56666642 211 0 0 00001
Q ss_pred -CC---cEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 150 -AK---NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 150 -~~---~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.. +... ++....+ +.+..+++..-++...++|...
T Consensus 178 ~E~~~~~p~~-sK~~~E~----~l~~~~l~~~ilRp~~vyG~~~ 216 (378)
T PLN00016 178 VEGDAVKPKA-GHLEVEA----YLQKLGVNWTSFRPQYIYGPGN 216 (378)
T ss_pred CCCCcCCCcc-hHHHHHH----HHHHcCCCeEEEeceeEECCCC
Confidence 00 0111 3333332 2245688888888888899754
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.1e-05 Score=72.32 Aligned_cols=167 Identities=15% Similarity=0.086 Sum_probs=83.3
Q ss_pred EEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH-HHHhcccC--C----CCcceEEe-C--------
Q 020875 10 VTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK-MELVDAAF--P----LLKGVVAT-T-------- 73 (320)
Q Consensus 10 IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~-~dl~~~~~--~----~~~~v~~~-~-------- 73 (320)
||||+||+|++++..|+..+.. .+|+++-+..+.+.+.... ..+.+... . ...+++.- .
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~-----~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lG 75 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPD-----VKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLG 75 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-T-----TEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG
T ss_pred CcCCCcHHHHHHHHHHHcCCCC-----cEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccC
Confidence 7999999999999999987641 1677777754321111111 11111000 0 01122211 1
Q ss_pred ---Chhhhc-CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH---------
Q 020875 74 ---DAVEAC-TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI--------- 140 (320)
Q Consensus 74 ---~~~~al-~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~--------- 140 (320)
+.++.+ +.+|+|||+|+.-. ...+..++...|+..++++++.+.+.. . .+++.+|. .-+....
T Consensus 76 L~~~~~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~-~-~~~~~iST-a~v~~~~~~~~~~~~~ 151 (249)
T PF07993_consen 76 LSDEDYQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGK-R-KRFHYIST-AYVAGSRPGTIEEKVY 151 (249)
T ss_dssp --HHHHHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS-----EEEEEE-GGGTTS-TTT--SSS-
T ss_pred CChHHhhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhcc-C-cceEEecc-ccccCCCCCccccccc
Confidence 122333 68999999987542 122444577899999999999999653 2 36777775 2111110
Q ss_pred -HHHHCCCCCCC---cEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEc
Q 020875 141 -LKEFAPSIPAK---NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186 (320)
Q Consensus 141 -~~~~~~~~~~~---~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G 186 (320)
.... ...+.. .-|.-|+..++++....++..|++..-+|-..|.|
T Consensus 152 ~~~~~-~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g 200 (249)
T PF07993_consen 152 PEEED-DLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVG 200 (249)
T ss_dssp HHH---EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-
T ss_pred ccccc-cchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccc
Confidence 0000 000111 13566888888988888888899988888777666
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00032 Score=62.17 Aligned_cols=156 Identities=12% Similarity=0.047 Sum_probs=83.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEE-EecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHM-LDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l-~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
.++++|+||+|++|.+++..|++.|. ++++ .+++. ++++....++...... ...++....+..+++
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~-------~v~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY-------DIAVNYARSR--KAAEETAEEIEALGRKALAVKANVGDVEKIKEMFA 74 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 35899999999999999999999886 6655 45442 3333222233221110 112222222222222
Q ss_pred ------CCCcEEEEeCCCCCC-C--CCCHH---HHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHHHHC
Q 020875 80 ------TGVNIAVMVGGFPRK-E--GMERK---DVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~-~--~~~r~---~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~~~~ 145 (320)
...|+||+.+|.... + ..+.. ..+..|......+++.+.++.. +..++|++|+....
T Consensus 75 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~--------- 145 (250)
T PRK08063 75 QIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSI--------- 145 (250)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhc---------
Confidence 358999999986321 1 11222 2355777666666666655321 23466766652210
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
...+..-.++.++.....+-..+++.+. +..++
T Consensus 146 ~~~~~~~~y~~sK~a~~~~~~~~~~~~~--~~~i~ 178 (250)
T PRK08063 146 RYLENYTTVGVSKAALEALTRYLAVELA--PKGIA 178 (250)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHh--HhCeE
Confidence 1222222456666666666666666543 34555
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0002 Score=67.21 Aligned_cols=115 Identities=20% Similarity=0.210 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-----cCCCCcceEEeCChhh
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-----AFPLLKGVVATTDAVE 77 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-----~~~~~~~v~~~~~~~~ 77 (320)
+++|||+|+| +|.+|+.++..|.+.+. ++++.+++ +..+....+-... ......++..+++..+
T Consensus 5 ~~~mkI~IiG-aGa~G~alA~~La~~g~--------v~l~~~~~--~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~ 73 (341)
T PRK12439 5 KREPKVVVLG-GGSWGTTVASICARRGP--------TLQWVRSA--ETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE 73 (341)
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCCC--------EEEEeCCH--HHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH
Confidence 3578999999 69999999999998763 56666643 2222111110000 0111235677778888
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh-----hHHHHHHH
Q 020875 78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT-----NALILKEF 144 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~-----~~~~~~~~ 144 (320)
+++++|+||++.- ...++++++.+..+-+++..+|.++|-++. +...+.++
T Consensus 74 a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~ 129 (341)
T PRK12439 74 AANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV 129 (341)
T ss_pred HHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH
Confidence 8999999999852 124556666666654455667888886653 34455553
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00033 Score=67.72 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=54.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC----------CcceEEe
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----------LKGVVAT 72 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~----------~~~v~~~ 72 (320)
..+|||+|+| .|++|..++..|+. ++ +|+.+|+++ ++++ .+.....+. ...+..+
T Consensus 4 ~~~mkI~vIG-lGyvGlpmA~~la~-~~-------~V~g~D~~~--~~ve----~l~~G~~~~~e~~~~~l~~~g~l~~t 68 (425)
T PRK15182 4 IDEVKIAIIG-LGYVGLPLAVEFGK-SR-------QVVGFDVNK--KRIL----ELKNGVDVNLETTEEELREARYLKFT 68 (425)
T ss_pred CCCCeEEEEC-cCcchHHHHHHHhc-CC-------EEEEEeCCH--HHHH----HHHCcCCCCCCCCHHHHHhhCCeeEE
Confidence 4579999999 89999999998877 45 899999974 3333 333222211 1235566
Q ss_pred CChhhhcCCCcEEEEeCCCCCC
Q 020875 73 TDAVEACTGVNIAVMVGGFPRK 94 (320)
Q Consensus 73 ~~~~~al~~aDvVi~~ag~~~~ 94 (320)
++. +++++||++|++.+.|..
T Consensus 69 ~~~-~~~~~advvii~Vptp~~ 89 (425)
T PRK15182 69 SEI-EKIKECNFYIITVPTPIN 89 (425)
T ss_pred eCH-HHHcCCCEEEEEcCCCCC
Confidence 554 578999999999988753
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00023 Score=63.05 Aligned_cols=157 Identities=16% Similarity=0.086 Sum_probs=82.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
+++|+|+||+|++|+.++..|++.|. ++++...+. .+.++....++...... ...++....+..++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW-------SVGINYARD-AAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDA 73 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHH
Confidence 35899999999999999999999886 676654321 23333333333221100 01122211122222
Q ss_pred ----cCCCcEEEEeCCCCCC--C--CCCH---HHHHHhhHHHHHHHHHHHhhhcC-----CCeEEEEEcCcchhhHHHHH
Q 020875 79 ----CTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEQHAA-----PNCKVLVVANPANTNALILK 142 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~--~--~~~r---~~~~~~n~~~~~~i~~~i~~~~~-----~~~~viv~snP~~~~~~~~~ 142 (320)
+...|++|++||.... + ..+. ...+..|......+++.+.+... +..++|++|+....
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~------ 147 (248)
T PRK06947 74 VQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASR------ 147 (248)
T ss_pred HHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhc------
Confidence 3468999999986421 1 1122 23466776665555433322210 13467777754321
Q ss_pred HHCCCCCCC-cEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAK-NITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~-~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+.. ..|+.++.-...+-..+++.+. +..++
T Consensus 148 ---~~~~~~~~~Y~~sK~~~~~~~~~la~~~~--~~~i~ 181 (248)
T PRK06947 148 ---LGSPNEYVDYAGSKGAVDTLTLGLAKELG--PHGVR 181 (248)
T ss_pred ---CCCCCCCcccHhhHHHHHHHHHHHHHHhh--hhCcE
Confidence 111211 2366666655566666777764 33454
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.4e-05 Score=68.85 Aligned_cols=166 Identities=10% Similarity=-0.003 Sum_probs=91.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--C---CCcceEEeCChh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--P---LLKGVVATTDAV--- 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~---~~~~v~~~~~~~--- 76 (320)
.+++.||||+|.||.+++..|+..|. +|++.+++. ++++....++..... . ...++....+..
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~-------~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~ 84 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA-------EVILPVRNR--AKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALG 84 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHH
Confidence 46899999999999999999999886 899998864 334333333432110 0 001111111111
Q ss_pred ----hhcCCCcEEEEeCCCCCCCC-----CCHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 77 ----EACTGVNIAVMVGGFPRKEG-----MERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 77 ----~al~~aDvVi~~ag~~~~~~-----~~r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+.....|++|+.||....+. ...+..+..|... ++.+.+.+++. .+++|++|+-.......-..
T Consensus 85 ~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~---~~riv~vsS~~~~~~~~~~~ 161 (313)
T PRK05854 85 EQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG---RARVTSQSSIAARRGAINWD 161 (313)
T ss_pred HHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC---CCCeEEEechhhcCCCcCcc
Confidence 12345899999998743211 1223456667655 34444444432 25677776533211000000
Q ss_pred ---HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 144 ---FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 144 ---~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
....++....|+.+++-...+-..+++.+......|+..
T Consensus 162 ~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~ 203 (313)
T PRK05854 162 DLNWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSN 203 (313)
T ss_pred cccccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEE
Confidence 001223334577777777777777887765545567643
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0002 Score=63.73 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=83.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh-----
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA----- 78 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a----- 78 (320)
+++|+||+|.+|.+++..|++.|. +|++++++. +.++....++...... ...++....+..++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~ 72 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-------AVAVADLNE--ETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAA 72 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 689999999999999999999886 789998763 2333222233221100 01122221222222
Q ss_pred --cCCCcEEEEeCCCCCC-C--CCCHH---HHHHhhHHHHHH----HHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 --CTGVNIAVMVGGFPRK-E--GMERK---DVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 --l~~aDvVi~~ag~~~~-~--~~~r~---~~~~~n~~~~~~----i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+...|+|||++|.... + ..+.. ..+..|+..... +.+.+++.. ...+++++|.-... .
T Consensus 73 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~~iv~~sS~~~~---------~ 142 (254)
T TIGR02415 73 EKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQG-HGGKIINAASIAGH---------E 142 (254)
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC-CCeEEEEecchhhc---------C
Confidence 3457999999987421 1 12222 346677655444 444444433 33566666642211 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.|...-|+.++.-...+...+++.+. +..++.
T Consensus 143 ~~~~~~~Y~~sK~a~~~~~~~l~~~~~--~~~i~v 175 (254)
T TIGR02415 143 GNPILSAYSSTKFAVRGLTQTAAQELA--PKGITV 175 (254)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 222222456665555556666666654 334553
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.8e-05 Score=66.57 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=66.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA---- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a---- 78 (320)
++|+||||+|.+|++++..|+++|. +|++.+++. ++++....++...... ...++....+..+.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-------RLALADVNE--EGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4799999999999999999999887 788998863 3333333333221110 01122111112222
Q ss_pred ---cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEEcCc
Q 020875 79 ---CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 79 ---l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~----i~~~i~~~~~~~~~viv~snP 133 (320)
+...|+||+.+|..... ..+ ....+..|+..... +.+.+++.. ..+++++|+.
T Consensus 72 ~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~vsS~ 137 (270)
T PRK05650 72 EEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK--SGRIVNIASM 137 (270)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC--CCEEEEECCh
Confidence 24689999999874321 112 22345677554444 444455443 2466767653
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.9e-05 Score=65.82 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=88.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh---
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE--- 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~--- 77 (320)
+.++++||||+|.+|.+++..|++.|. +|++.+++. ++++....++...... ...++....+..+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-------QVAIAARHL--DALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 456899999999999999999999987 899999864 3344333333321110 1112221112222
Q ss_pred ----hcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEEcCcchhhHHHHHH
Q 020875 78 ----ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 78 ----al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~----~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+...|++|+.+|..... ..+ ..+.+..|+.....+.+.+.+ .. ....++++++-.. .
T Consensus 79 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~g~iv~~sS~~~-------~ 150 (253)
T PRK05867 79 QVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQG-QGGVIINTASMSG-------H 150 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcC-CCcEEEEECcHHh-------c
Confidence 234789999999874321 112 233456777665555555433 22 2345666653211 0
Q ss_pred HCCCCCCC-cEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAK-NITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~-~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
....|.. -.|+.++.....+-+.+++.+. +..|+.
T Consensus 151 -~~~~~~~~~~Y~asKaal~~~~~~la~e~~--~~gI~v 186 (253)
T PRK05867 151 -IINVPQQVSHYCASKAAVIHLTKAMAVELA--PHKIRV 186 (253)
T ss_pred -CCCCCCCccchHHHHHHHHHHHHHHHHHHh--HhCeEE
Confidence 0111222 2466666666677777777764 345653
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0003 Score=62.77 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=83.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeE-EEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI-LHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~e-v~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
.++|+|+||+|.+|++++..|+..|. + |++++++. +.......++...... ...++....+..+.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~-------~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA-------AGLVICGRNA--EKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVA 76 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-------CeEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999999886 5 89999863 2333222223211110 01122111112222
Q ss_pred -----cCCCcEEEEeCCCCCCCC---CCH---HHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEEcCcchhhHHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~---~~r---~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+.+.|++|+++|...... .+. ...+..|+.....+.+.+.+.. .....++++|+-...
T Consensus 77 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~-------- 148 (260)
T PRK06198 77 AADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAH-------- 148 (260)
T ss_pred HHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccc--------
Confidence 246899999998754211 122 2346677766666655543321 123456766643211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+..-.|+.++.-...+-+.+++.+. +..++
T Consensus 149 -~~~~~~~~Y~~sK~a~~~~~~~~a~e~~--~~~i~ 181 (260)
T PRK06198 149 -GGQPFLAAYCASKGALATLTRNAAYALL--RNRIR 181 (260)
T ss_pred -cCCCCcchhHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence 1222222456665544555555666554 33454
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00027 Score=62.54 Aligned_cols=151 Identities=11% Similarity=0.052 Sum_probs=77.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCChhhh----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEA---- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~~~~a---- 78 (320)
+.++|+||+|++|++++..|++.|. ++++..... .........++....... ..++....+..++
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~-------~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF-------KVVAGCGPN-SPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKV 75 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC-------EEEEEcCCC-hHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4789999999999999999999986 666644321 122222222222111110 1122222222222
Q ss_pred ---cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 79 ---CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 79 ---l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+...|+|||++|...... .+ ....+..|......+.+.+.... ....+++++|+.... .+
T Consensus 76 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~---------~~ 146 (246)
T PRK12938 76 KAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQ---------KG 146 (246)
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhcc---------CC
Confidence 346899999998753211 12 23456777776555444443321 122467777753211 11
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+....|+.++.....+-..+++.++
T Consensus 147 ~~~~~~y~~sK~a~~~~~~~l~~~~~ 172 (246)
T PRK12938 147 QFGQTNYSTAKAGIHGFTMSLAQEVA 172 (246)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 12112345555444455566666654
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=72.07 Aligned_cols=157 Identities=15% Similarity=0.035 Sum_probs=88.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a-- 78 (320)
+.++++|+||+|++|.+++..|+++|. +|++.+++. ++++....++..... ....+++...+..+.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 384 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-------EVVASDIDE--AAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAE 384 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 347899999999999999999999987 799999864 333333333322110 001122221122222
Q ss_pred -----cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+...|++|+.||..... ..+ ....+..|+.....+.+. +.+.+ ..+++|++|+-...
T Consensus 385 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~g~iv~~sS~~~~------- 456 (582)
T PRK05855 385 WVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERG-TGGHIVNVASAAAY------- 456 (582)
T ss_pred HHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEECChhhc-------
Confidence 23579999999975321 112 223566787666555544 44433 34567777754321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+-..+++.+. +..|+.
T Consensus 457 --~~~~~~~~Y~~sKaa~~~~~~~l~~e~~--~~gi~v 490 (582)
T PRK05855 457 --APSRSLPAYATSKAAVLMLSECLRAELA--AAGIGV 490 (582)
T ss_pred --cCCCCCcHHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 1222222466666655556666666654 334553
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00021 Score=66.53 Aligned_cols=103 Identities=11% Similarity=0.209 Sum_probs=65.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc----CCCCcceEEeCChhhhc-C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA----FPLLKGVVATTDAVEAC-T 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~----~~~~~~v~~~~~~~~al-~ 80 (320)
|||+|+| +|.+|++++..|.+.|+ +|.++++++ +.++....+-.+.. ......+..+++..+++ .
T Consensus 1 MkI~IiG-aGa~G~ala~~L~~~g~-------~V~l~~r~~--~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILG-AGSFGTAIAIALSSKKI-------SVNLWGRNH--TTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEecCH--HHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence 5899999 59999999999999886 899999863 22222211100110 11223566677777776 5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhh-hcCCCeEEEEEcCcc
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQ-HAAPNCKVLVVANPA 134 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~-~~~~~~~viv~snP~ 134 (320)
++|+||++.- ...+.++++.+.. +-.++..++..+|=.
T Consensus 71 ~~Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 71 NATCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CCCEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 8999999852 1234455555554 433455677777765
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=65.59 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=88.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--CC---CCcceEEeCC----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FP---LLKGVVATTD---- 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~~---~~~~v~~~~~---- 74 (320)
+.++++|+||+|.+|..++..|++.|. +|++.+++. +.++....++.... .. ...++....+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-------DVLIVARDA--DALAQARDELAEEFPEREVHGLAADVSDDEDRRAI 78 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999999887 899999864 33443333443221 00 0112211111
Q ss_pred ---hhhhcCCCcEEEEeCCCCCC-C--CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHH
Q 020875 75 ---AVEACTGVNIAVMVGGFPRK-E--GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 75 ---~~~al~~aDvVi~~ag~~~~-~--~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~ 143 (320)
..+.+...|+||+++|.... + ..+ ....+..|+.....+++.+.++- .+...+|++|+-...
T Consensus 79 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~------- 151 (257)
T PRK09242 79 LDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGL------- 151 (257)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccC-------
Confidence 22334568999999986321 1 112 23356677776666655543311 123567777653211
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+...+|..+. +..++.
T Consensus 152 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v 185 (257)
T PRK09242 152 --THVRSGAPYGMTKAALLQMTRNLAVEWA--EDGIRV 185 (257)
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHHHH--HhCeEE
Confidence 1222222466666655666666666653 344553
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00023 Score=63.55 Aligned_cols=149 Identities=20% Similarity=0.143 Sum_probs=81.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhc-----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEAC----- 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al----- 79 (320)
++++|+||+|++|.+++..|+++|. +|++++++. ++++....++..... ....++....+..+++
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD-------RVLALDIDA--AALAAFADALGDARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999886 799999864 333322222211100 0011222112222223
Q ss_pred --CCCcEEEEeCCCCCCCC---CCHH---HHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 80 --TGVNIAVMVGGFPRKEG---MERK---DVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 80 --~~aDvVi~~ag~~~~~~---~~r~---~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
.+.|+||+++|...... .+.. ..+..|......+++.+.... .....++++|+.... . ..+.
T Consensus 74 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~------~-~~~~- 145 (257)
T PRK07074 74 ERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGM------A-ALGH- 145 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhc------C-CCCC-
Confidence 35899999998643211 1222 234567666666665553221 123456666652211 0 0111
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcC
Q 020875 150 AKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
..++.++.-..++...+++.++
T Consensus 146 --~~y~~sK~a~~~~~~~~a~~~~ 167 (257)
T PRK07074 146 --PAYSAAKAGLIHYTKLLAVEYG 167 (257)
T ss_pred --cccHHHHHHHHHHHHHHHHHHh
Confidence 2456666666677777887765
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00025 Score=62.37 Aligned_cols=154 Identities=14% Similarity=0.142 Sum_probs=80.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc----hhHHHHHHHhcccCCCCcceEEeCChhhhcCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE----ALNGVKMELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~----~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
|+|+|+||+|+||++++..|++++.- ..+.+.+++...+ ++.....|+.+... + ....+.+..
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~Dls~~~~-----~---~~~~~~~~~ 67 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPD-----ATVHATYRHHKPDFQHDNVQWHALDVTDEAE-----I---KQLSEQFTQ 67 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCC-----CEEEEEccCCccccccCceEEEEecCCCHHH-----H---HHHHHhcCC
Confidence 58999999999999999999987531 2566666543111 00001122222110 0 013344678
Q ss_pred CcEEEEeCCCCCCC---------CCCHH---HHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 82 VNIAVMVGGFPRKE---------GMERK---DVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 82 aDvVi~~ag~~~~~---------~~~r~---~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.|+||+++|..... ..+.+ ..+..|+.... .+++.+++.. ..+++++|...... ..
T Consensus 68 id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~--~~~i~~iss~~~~~----~~-- 139 (235)
T PRK09009 68 LDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSE--SAKFAVISAKVGSI----SD-- 139 (235)
T ss_pred CCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccC--CceEEEEeeccccc----cc--
Confidence 99999999975321 11222 23445544444 4444444332 24566666432211 00
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..++..-.|+.++.-...+-..++..+.-....++
T Consensus 140 ~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~ 174 (235)
T PRK09009 140 NRLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGV 174 (235)
T ss_pred CCCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeE
Confidence 11222235666666666667777777654334555
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00061 Score=60.99 Aligned_cols=158 Identities=13% Similarity=0.115 Sum_probs=84.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE---- 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~---- 77 (320)
.++++||||+|.+|.+++..|+..|. .+++..++. .+.+.....++...... ...++....+..+
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~-------~vvi~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~ 78 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA-------KVVINYRSD-EEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQT 78 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHH
Confidence 47999999999999999999999886 677766642 12222222233221100 0112221111111
Q ss_pred ---hcCCCcEEEEeCCCCCCCC---CCH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 78 ---ACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 78 ---al~~aDvVi~~ag~~~~~~---~~r---~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
.+...|++|+.+|...... .+. ...+..|+... +.+++.+.+.. ....+|++|+-. .
T Consensus 79 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~-~~g~iv~~sS~~--------~- 148 (261)
T PRK08936 79 AVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHD-IKGNIINMSSVH--------E- 148 (261)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEEcccc--------c-
Confidence 2345799999998743211 122 23456775544 34455555543 346677776521 1
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
....|..-.|+.++.-...+...+++.+. +..|+..
T Consensus 149 ~~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~ 184 (261)
T PRK08936 149 QIPWPLFVHYAASKGGVKLMTETLAMEYA--PKGIRVN 184 (261)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeEEE
Confidence 01233323567666555555556666653 3456543
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00015 Score=65.92 Aligned_cols=162 Identities=14% Similarity=0.137 Sum_probs=88.9
Q ss_pred CCCCCCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc-cchhHHHHHHHhcccCCCCcceEEeCCh--
Q 020875 1 MAKEPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPA-AEALNGVKMELVDAAFPLLKGVVATTDA-- 75 (320)
Q Consensus 1 m~~~~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~-~~~~~~~~~dl~~~~~~~~~~v~~~~~~-- 75 (320)
|..+.+.++||||+ +.+|..++..|++.|. .|++.++++. .+.++....++... .....++....+.
T Consensus 1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~-------~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~ 72 (274)
T PRK08415 1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGA-------ELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKS 72 (274)
T ss_pred CccCCcEEEEECCCCCCCHHHHHHHHHHHCCC-------EEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHH
Confidence 66777899999986 6899999999999986 7888887631 11222111111100 0011122111111
Q ss_pred -----hhhcCCCcEEEEeCCCCCC-----C--CCCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH
Q 020875 76 -----VEACTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 76 -----~~al~~aDvVi~~ag~~~~-----~--~~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
.+.+...|++|+.||.... + ..+. ...+..|+.....+.+.+...-..++++|++|.-...
T Consensus 73 ~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~---- 148 (274)
T PRK08415 73 LAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGV---- 148 (274)
T ss_pred HHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCc----
Confidence 1223467999999997421 1 1222 3456777766555555444432123567777642211
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|..-.|+.++---..|-+.+|..+. +..|+.
T Consensus 149 -----~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrV 182 (274)
T PRK08415 149 -----KYVPHYNVMGVAKAALESSVRYLAVDLG--KKGIRV 182 (274)
T ss_pred -----cCCCcchhhhhHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1122222466676666677777777764 455663
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00017 Score=64.41 Aligned_cols=104 Identities=12% Similarity=0.028 Sum_probs=63.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.+++.||||+|.+|.+++..|++.|. +|+++++++. +.++ .. ..........++....+..+.+...|+
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~-------~Vi~~~r~~~-~~~~-~~--~~~~~~~~~~D~~~~~~~~~~~~~iDi 82 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA-------KVIGLTHSKI-NNSE-SN--DESPNEWIKWECGKEESLDKQLASLDV 82 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-------EEEEEECCch-hhhh-hh--ccCCCeEEEeeCCCHHHHHHhcCCCCE
Confidence 36899999999999999999999886 7888887641 1111 00 000000011122222234456678999
Q ss_pred EEEeCCCCCCCCCC---HHHHHHhhHHHHHHHHHHHhh
Q 020875 85 AVMVGGFPRKEGME---RKDVMSKNVSIYKAQASALEQ 119 (320)
Q Consensus 85 Vi~~ag~~~~~~~~---r~~~~~~n~~~~~~i~~~i~~ 119 (320)
+|+.||.......+ ..+.+..|+.....+++.+..
T Consensus 83 lVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 120 (245)
T PRK12367 83 LILNHGINPGGRQDPENINKALEINALSSWRLLELFED 120 (245)
T ss_pred EEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999874322222 345677888766666665443
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=64.53 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=84.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++|+|+||+|+||++++..|+..|. +|++.++++ ++++....++...... ...++....+..+.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA-------KVVLASRRV--ERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 47999999999999999999999886 788888864 3343333333211100 01112111122222
Q ss_pred ----cCCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHhh----hcC------CCeEEEEEcCcchhhH
Q 020875 79 ----CTGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQ----HAA------PNCKVLVVANPANTNA 138 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~~----~~~------~~~~viv~snP~~~~~ 138 (320)
+...|++|+++|...... . .....+..|+.....+.+.+.. ... +..+++++++-...
T Consensus 80 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~-- 157 (258)
T PRK06949 80 AETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGL-- 157 (258)
T ss_pred HHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECccccc--
Confidence 235899999998643211 1 1233456676666555554432 210 13566666643211
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...+....|+.++.....+-..+++.++ +..++.
T Consensus 158 -------~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~~i~v 191 (258)
T PRK06949 158 -------RVLPQIGLYCMSKAAVVHMTRAMALEWG--RHGINV 191 (258)
T ss_pred -------CCCCCccHHHHHHHHHHHHHHHHHHHHH--hcCeEE
Confidence 1122222355565555566666666654 234553
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00018 Score=64.25 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=64.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC----- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al----- 79 (320)
.++|+|+||+|++|.+++..|++.|+ +|++++++. ..++....++.. .....++....+..+.+
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~ 75 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA-------TVVVGDIDP--EAGKAAADEVGG--LFVPTDVTDEDAVNALFDTAAE 75 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHcCC--cEEEeeCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999886 899999864 222222222211 00011111111222222
Q ss_pred --CCCcEEEEeCCCCCC---C--CCC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcC
Q 020875 80 --TGVNIAVMVGGFPRK---E--GME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 80 --~~aDvVi~~ag~~~~---~--~~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~sn 132 (320)
...|+||+++|.... + ..+ ....+..|......+ .+.+++.. ...++++|+
T Consensus 76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--~g~iv~~sS 140 (255)
T PRK06057 76 TYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQG--KGSIINTAS 140 (255)
T ss_pred HcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhC--CcEEEEEcc
Confidence 357999999986421 1 111 234456666554444 44444432 346676665
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=57.34 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=43.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEE-EEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
||+|+||+|++|+.++..|.+...+ ++ .++....+ .+....-.........++.......+.+.++|+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~------e~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv 70 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDF------ELVALVSSSRS----AGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVV 70 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTE------EEEEEEESTTT----TTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCc------cEEEeeeeccc----cCCeeehhccccccccceeEeecchhHhhcCCEE
Confidence 7999999999999999999885543 54 45665421 1211111111111122333333345678999999
Q ss_pred EEeCC
Q 020875 86 VMVGG 90 (320)
Q Consensus 86 i~~ag 90 (320)
|++.+
T Consensus 71 f~a~~ 75 (121)
T PF01118_consen 71 FLALP 75 (121)
T ss_dssp EE-SC
T ss_pred EecCc
Confidence 99853
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=66.31 Aligned_cols=158 Identities=16% Similarity=0.070 Sum_probs=86.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.+++.||||+|.+|.+++..|+++|. .|++.|+.. .+.++....++...... ...++....+..+.
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga-------~Vv~~~~~~-~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~ 83 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGA-------TVVVNDVAS-ALDASDVLDEIRAAGAKAVAVAGDISQRATADELVAT 83 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEecCCc-hhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 47899999999999999999999886 788888753 12233223333221100 11122211112221
Q ss_pred ---cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc---------CCCeEEEEEcCcchhhHHH
Q 020875 79 ---CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA---------APNCKVLVVANPANTNALI 140 (320)
Q Consensus 79 ---l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~---------~~~~~viv~snP~~~~~~~ 140 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+..+- ...+++|++|+....
T Consensus 84 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---- 159 (306)
T PRK07792 84 AVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGL---- 159 (306)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccc----
Confidence 346899999999864321 22 23456778776666665543211 012466766653311
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-..+++.+. +..|+.
T Consensus 160 -----~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~v 193 (306)
T PRK07792 160 -----VGPVGQANYGAAKAGITALTLSAARALG--RYGVRA 193 (306)
T ss_pred -----cCCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1111111356666655566666666653 355663
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00023 Score=72.91 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=86.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-----CCCcceEEeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-----PLLKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-----~~~~~v~~~~~~~~al 79 (320)
.++++||||+|+||++++..|++.|. +|++.|++. +.++....++..... ....+++...+..+++
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga-------~Vvi~~r~~--~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~ 484 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA-------HVVLADLNL--EAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAF 484 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHH
Confidence 36899999999999999999999886 899999864 333333233321100 0112232222233333
Q ss_pred -------CCCcEEEEeCCCCCCCC---CCH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 80 -------TGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~~~~---~~r---~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
.+.|+||+.||...... .+. ...+..|+... +..++.+++.+ ....+|++|+....
T Consensus 485 ~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~-~~g~IV~iSS~~a~------ 557 (676)
T TIGR02632 485 ADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQG-LGGNIVFIASKNAV------ 557 (676)
T ss_pred HHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeChhhc------
Confidence 36899999999753211 121 22344555433 34455555543 33566666643211
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+..-.|+.++.....+.+.+++.++- ..|+
T Consensus 558 ---~~~~~~~aY~aSKaA~~~l~r~lA~el~~--~gIr 590 (676)
T TIGR02632 558 ---YAGKNASAYSAAKAAEAHLARCLAAEGGT--YGIR 590 (676)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHHHhcc--cCeE
Confidence 11222224677777677777778877653 3454
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=64.70 Aligned_cols=157 Identities=12% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC-cCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-C---CCcceEEeCChh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-P---LLKGVVATTDAV-- 76 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~---~~~~v~~~~~~~-- 76 (320)
++++|+|+||+|.+|.+++..|+++| . .|++.+++++. .++....++..... . ...++....+..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~-------~V~~~~r~~~~-~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA-------RVVLAALPDDP-RRDAAVAQMKAAGASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC-------eEEEEeCCcch-hHHHHHHHHHhcCCCceEEEEecCCChHHHHHH
Confidence 45789999999999999999999875 4 78899887521 13333333432111 0 011222212211
Q ss_pred --hhc--CCCcEEEEeCCCCCCCCC---CH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 77 --EAC--TGVNIAVMVGGFPRKEGM---ER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 77 --~al--~~aDvVi~~ag~~~~~~~---~r---~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
+.. .+.|++|+.+|....... +. .+.+..|+... +.+.+.+++.+ ...++++|+-...
T Consensus 79 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~--~~~iv~isS~~g~------ 150 (253)
T PRK07904 79 IDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG--FGQIIAMSSVAGE------ 150 (253)
T ss_pred HHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC--CceEEEEechhhc------
Confidence 111 379999998887532111 11 13467776544 44666666653 3567777653211
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-..++..+. +..++.
T Consensus 151 ---~~~~~~~~Y~~sKaa~~~~~~~l~~el~--~~~i~v 184 (253)
T PRK07904 151 ---RVRRSNFVYGSTKAGLDGFYLGLGEALR--EYGVRV 184 (253)
T ss_pred ---CCCCCCcchHHHHHHHHHHHHHHHHHHh--hcCCEE
Confidence 1112222456665544444444554443 344553
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00024 Score=65.79 Aligned_cols=80 Identities=11% Similarity=0.171 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+.|||+|+| +|.+|++++..|...|+ +|.++|+++. .++.++++++|
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~-------~V~~~~r~~~-------------------------~~~~~~~~~ad 49 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANGH-------RVRVWSRRSG-------------------------LSLAAVLADAD 49 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCC-------EEEEEeCCCC-------------------------CCHHHHHhcCC
Confidence 568999999 69999999999999997 8999998631 14567778999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhh-cCCCeEEEEEcC
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH-AAPNCKVLVVAN 132 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~-~~~~~~viv~sn 132 (320)
+||++.. . ..++++++.+..+ ..++.+++..|+
T Consensus 50 vvi~~vp--~--------------~~~~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 50 VIVSAVS--M--------------KGVRPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred EEEEECC--h--------------HHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 9999852 1 1234455555442 224566666665
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00033 Score=62.86 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=83.8
Q ss_pred CCEEEEEcC--CChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCCh-------
Q 020875 5 PVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA------- 75 (320)
Q Consensus 5 ~~kI~IiGA--~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~------- 75 (320)
.++++|||| ++.+|.+++..|++.|. .|++.+++++.+.++....++......+..++....+.
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~-------~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGA-------EVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCC-------EEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHH
Confidence 468999998 78999999999999887 78898875322222222222211110111222222111
Q ss_pred hhhcCCCcEEEEeCCCCCC-----C--CCCHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 76 VEACTGVNIAVMVGGFPRK-----E--GMERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~-----~--~~~r~---~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.+.+...|++|+.||.... + ..+.+ ..+..|+.....+.+.+...-.+.+.+++++... .
T Consensus 80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~-~--------- 149 (256)
T PRK07889 80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDA-T--------- 149 (256)
T ss_pred HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecc-c---------
Confidence 2224568999999987421 1 12222 3467777655555444433211234566655211 0
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|.-..|+.++.--..+-+.++..+. +..|+.
T Consensus 150 ~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrv 183 (256)
T PRK07889 150 VAWPAYDWMGVAKAALESTNRYLARDLG--PRGIRV 183 (256)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 0112111345666666667777777765 345653
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00018 Score=63.83 Aligned_cols=148 Identities=15% Similarity=0.186 Sum_probs=80.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--CC---CCcceEEeCCh-----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FP---LLKGVVATTDA----- 75 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~~---~~~~v~~~~~~----- 75 (320)
++++||||+|.+|.+++..|+++|. .|++.+++. +++.....++.... .. ...++....+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR-------DLALCARRT--DRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFA 73 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHH
Confidence 5799999999999999999999886 788998864 33333333332211 00 01122211111
Q ss_pred --hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 76 --VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 76 --~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+.+...|+||+.||+..... .+ ..+.+..|+.....+.+.+. +.. ..++|++|+-...
T Consensus 74 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~------- 144 (248)
T PRK08251 74 EFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG--SGHLVLISSVSAV------- 144 (248)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEEeccccc-------
Confidence 223457899999998753221 11 12346677776666655543 333 2456666642211
Q ss_pred HCCCCCC-CcEEEeehhhHHHHHHHHHHHcC
Q 020875 144 FAPSIPA-KNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 144 ~~~~~~~-~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|. ...|+.++.....+...++..+.
T Consensus 145 --~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~ 173 (248)
T PRK08251 145 --RGLPGVKAAYAASKAGVASLGEGLRAELA 173 (248)
T ss_pred --cCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 12232 12355555444445555555554
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00028 Score=72.34 Aligned_cols=154 Identities=19% Similarity=0.150 Sum_probs=84.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCChhhhc----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEAC---- 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~al---- 79 (320)
++|+||||+|++|++++..|+..|. +|+++|++. +.+......+..... ....++....+..+++
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga-------~Vvl~~r~~--~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA-------CVVLADLDE--EAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC-------EEEEEeCCH--HHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHH
Confidence 6899999999999999999999886 799999874 333322222322100 0011221111222222
Q ss_pred ---CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 80 ---TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 80 ---~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
.+.|+||++||...... .+ ....+..|+.....+++.+. +.. ..+.+|++|+-... .
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~-~~g~iV~vsS~~~~---------~ 563 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQG-LGGSIVFIASKNAV---------N 563 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCcEEEEECCcccc---------C
Confidence 36899999999753211 12 22346677776666655443 332 23567777653211 0
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+.+..-.|+.++.....+.+.++..++ +..|+
T Consensus 564 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIr 595 (681)
T PRK08324 564 PGPNFGAYGAAKAAELHLVRQLALELG--PDGIR 595 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence 111112355555555556666666654 33454
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00017 Score=71.44 Aligned_cols=124 Identities=19% Similarity=0.107 Sum_probs=71.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCCh-----
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA----- 75 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~----- 75 (320)
|+.+.+.++||||++.+|.+++..|++.|. .|++++++. ++++....++......+..++....+.
T Consensus 1 ~~~~~k~~lITGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (520)
T PRK06484 1 SKAQSRVVLVTGAAGGIGRAACQRFARAGD-------QVVVADRNV--ERARERADSLGPDHHALAMDVSDEAQIREGFE 71 (520)
T ss_pred CCCCCeEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceeEEEeccCCHHHHHHHHH
Confidence 455667899999999999999999999986 799999864 333322222211100011122211122
Q ss_pred --hhhcCCCcEEEEeCCCCC---CC--CCC---HHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCc
Q 020875 76 --VEACTGVNIAVMVGGFPR---KE--GME---RKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANP 133 (320)
Q Consensus 76 --~~al~~aDvVi~~ag~~~---~~--~~~---r~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP 133 (320)
.+.+...|++|+.||... .+ ..+ ....+..|+.....+.+.+..+ ......+|++|+-
T Consensus 72 ~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~ 142 (520)
T PRK06484 72 QLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASG 142 (520)
T ss_pred HHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCc
Confidence 222346899999998721 11 112 2345677776555555544443 1123367777753
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00069 Score=60.53 Aligned_cols=151 Identities=11% Similarity=0.104 Sum_probs=81.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh-----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE----- 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~----- 77 (320)
.+|+|+||+|.+|++++..|++.|. +|++.++.. .+.++....++...... ...++....+..+
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF-------DIGITWHSD-EEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKL 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCC-hHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4899999999999999999999987 777765432 22233222233221100 0112211111112
Q ss_pred --hcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 78 --ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 78 --al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
.+...|+||+.+|..... ..+ ..+.+..|+.....+.+.+..+- ...+++|++|+-... .
T Consensus 75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~---------~ 145 (256)
T PRK12743 75 IQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH---------T 145 (256)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc---------C
Confidence 224579999999874321 112 23456677776666666554431 123567777753211 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
+.+..-.|+.++.....+...+++.+.
T Consensus 146 ~~~~~~~Y~~sK~a~~~l~~~la~~~~ 172 (256)
T PRK12743 146 PLPGASAYTAAKHALGGLTKAMALELV 172 (256)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 122222455555555556666666654
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00025 Score=69.04 Aligned_cols=120 Identities=27% Similarity=0.308 Sum_probs=71.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh-------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE------- 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~------- 77 (320)
.++++||||+|.+|..++..|++.|. +++++|+..+.+.+.....++.. .....++....+..+
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga-------~vi~~~~~~~~~~l~~~~~~~~~--~~~~~Dv~~~~~~~~~~~~~~~ 280 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGA-------HVVCLDVPAAGEALAAVANRVGG--TALALDITAPDAPARIAEHLAE 280 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCccHHHHHHHHHHcCC--eEEEEeCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999886 78888875432322222211110 000011111111111
Q ss_pred hcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhh--cCCCeEEEEEcCc
Q 020875 78 ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQH--AAPNCKVLVVANP 133 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~--~~~~~~viv~snP 133 (320)
.....|+|||++|..... ..+ ....+..|+.....+.+.+... ..+..++|++|+.
T Consensus 281 ~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~ 344 (450)
T PRK08261 281 RHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSI 344 (450)
T ss_pred hCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECCh
Confidence 123589999999975421 112 3345778888888888887662 1134577777753
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00019 Score=63.32 Aligned_cols=118 Identities=19% Similarity=0.124 Sum_probs=66.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChhhh----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEA---- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a---- 78 (320)
++++|+||+|++|++++..|++.|. .|++.+++.. +.+......+.+... ....++....+..++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~-------~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY-------RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4899999999999999999998886 7888888642 112111111111100 001122221222222
Q ss_pred ---cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCc
Q 020875 79 ---CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 79 ---l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP 133 (320)
+...|++|+.+|..... ..+ ....+..|+.....+ .+.+++. +..++|++|+.
T Consensus 75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~iss~ 140 (245)
T PRK12824 75 EEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ--GYGRIINISSV 140 (245)
T ss_pred HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--CCeEEEEECCh
Confidence 33589999999864311 112 233556777766665 4444544 34577777754
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00023 Score=66.44 Aligned_cols=98 Identities=22% Similarity=0.324 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
..++|+||||+|++|+.++..|..+ +. .+++++++++ +++.....++.+. ++ .++.+++.++
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv------~~lilv~R~~--~rl~~La~el~~~------~i---~~l~~~l~~a 216 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGV------AELLLVARQQ--ERLQELQAELGGG------KI---LSLEEALPEA 216 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCC------CEEEEEcCCH--HHHHHHHHHhccc------cH---HhHHHHHccC
Confidence 3479999999999999999999854 43 2789998863 4444333333211 11 1467889999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~ 137 (320)
|+||++++.+...-.+..++ . +...++=++-|=|+-
T Consensus 217 DiVv~~ts~~~~~~I~~~~l------------------~-~~~~viDiAvPRDVd 252 (340)
T PRK14982 217 DIVVWVASMPKGVEIDPETL------------------K-KPCLMIDGGYPKNLD 252 (340)
T ss_pred CEEEECCcCCcCCcCCHHHh------------------C-CCeEEEEecCCCCCC
Confidence 99999998765211222111 1 346777788887653
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00056 Score=61.32 Aligned_cols=156 Identities=11% Similarity=0.111 Sum_probs=85.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC----CCCcceEEeCCh-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF----PLLKGVVATTDA----- 75 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~----~~~~~v~~~~~~----- 75 (320)
.++++||||++.||.+++..|++.|. .|++.+++. .+.++....++..... ....+++...+.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV-------NIAFTYNSN-VEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFK 79 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCC-HHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999886 777765432 2334433334432110 011222221111
Q ss_pred --hhhcCCCcEEEEeCCCCCC-------C--CCC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhh
Q 020875 76 --VEACTGVNIAVMVGGFPRK-------E--GME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 76 --~~al~~aDvVi~~ag~~~~-------~--~~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~ 137 (320)
.+.+...|++|+.||.... + ..+ ....+..|+.. .+.+.+.+++. +.+.+|++|+..+.
T Consensus 80 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS~~~~- 156 (260)
T PRK08416 80 KIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKV--GGGSIISLSSTGNL- 156 (260)
T ss_pred HHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhcc--CCEEEEEEeccccc-
Confidence 1223468999999975311 1 011 11234444433 34455555543 23567777754321
Q ss_pred HHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|..-.|+.++.....+-..+++.+. +..|+.
T Consensus 157 --------~~~~~~~~Y~asK~a~~~~~~~la~el~--~~gi~v 190 (260)
T PRK08416 157 --------VYIENYAGHGTSKAAVETMVKYAATELG--EKNIRV 190 (260)
T ss_pred --------cCCCCcccchhhHHHHHHHHHHHHHHhh--hhCeEE
Confidence 0112122577788777788888888875 345553
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0011 Score=60.24 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=95.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-----CcceEEeCChh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-----LKGVVATTDAV-- 76 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-----~~~v~~~~~~~-- 76 (320)
..+.|+||||+..||.++|+.|+..|. .++++.+.. ++++-...++....... ..++....+..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-------~l~lvar~~--rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~ 81 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-------KLVLVARRA--RRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKF 81 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-------ceEEeehhh--hhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHH
Confidence 456899999999999999999999997 566666643 34444434444332111 12333323333
Q ss_pred -----hhcCCCcEEEEeCCCCCCCCC---C---HHHHHHhh----HHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 77 -----EACTGVNIAVMVGGFPRKEGM---E---RKDVMSKN----VSIYKAQASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 77 -----~al~~aDvVi~~ag~~~~~~~---~---r~~~~~~n----~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
.-+.+.|+.|+-||+....-. + ....++.| +-.++..++.+++.+ ++.++++++..+-+
T Consensus 82 ~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~--~GhIVvisSiaG~~---- 155 (282)
T KOG1205|consen 82 VEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN--DGHIVVISSIAGKM---- 155 (282)
T ss_pred HHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC--CCeEEEEecccccc----
Confidence 346789999999998762211 1 22345555 456788888888874 57777777655322
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+|..-+|..|+-.-..|-..+...+.-....|+
T Consensus 156 -----~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~ 189 (282)
T KOG1205|consen 156 -----PLPFRSIYSASKHALEGFFETLRQELIPLGTIII 189 (282)
T ss_pred -----CCCcccccchHHHHHHHHHHHHHHHhhccCceEE
Confidence 3444347777766555555555555554444444
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0016 Score=57.49 Aligned_cols=156 Identities=11% Similarity=0.001 Sum_probs=85.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCCh--
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA-- 75 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~-- 75 (320)
|+.+.+.++|+||++.+|.+++..|++.|. .|++.++++ ++++....++...... +..++....+.
T Consensus 1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~ 71 (227)
T PRK08862 1 MDIKSSIILITSAGSVLGRTISCHFARLGA-------TLILCDQDQ--SALKDTYEQCSALTDNVYSFQLKDFSQESIRH 71 (227)
T ss_pred CCCCCeEEEEECCccHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCCeEEEEccCCCHHHHHH
Confidence 666678999999999999999999999987 799998864 3443333333221111 00111111111
Q ss_pred -----hhhcC-CCcEEEEeCCCCCCC----CCCHHH---HHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhH
Q 020875 76 -----VEACT-GVNIAVMVGGFPRKE----GMERKD---VMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 76 -----~~al~-~aDvVi~~ag~~~~~----~~~r~~---~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~ 138 (320)
.+.+. ..|++|+.+|....+ ..+.++ .+..|.. ..+.+.+.+.+.. ..+.+|++|+-.
T Consensus 72 ~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~-~~g~Iv~isS~~---- 146 (227)
T PRK08862 72 LFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRN-KKGVIVNVISHD---- 146 (227)
T ss_pred HHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCceEEEEecCC----
Confidence 12234 689999999742211 122222 2333433 3344455565543 345677777521
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+++..-.|+.++---..+.+.++..+. +..|+
T Consensus 147 --------~~~~~~~Y~asKaal~~~~~~la~el~--~~~Ir 178 (227)
T PRK08862 147 --------DHQDLTGVESSNALVSGFTHSWAKELT--PFNIR 178 (227)
T ss_pred --------CCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence 112112345555555566666777654 34455
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00067 Score=65.82 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=48.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+||+|.+|..++..|...|+ +|.++|+++ +.+...+.++ .+...++..+++.++|+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-------~V~v~~r~~--~~~~~~a~~~---------gv~~~~~~~e~~~~aDvV 62 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-------EVIVTGRDP--KKGKEVAKEL---------GVEYANDNIDAAKDADIV 62 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-------EEEEEECCh--HHHHHHHHHc---------CCeeccCHHHHhccCCEE
Confidence 6899999789999999999999886 799999864 2222122111 122344667888999999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 63 Ilav 66 (437)
T PRK08655 63 IISV 66 (437)
T ss_pred EEec
Confidence 9986
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00016 Score=66.36 Aligned_cols=119 Identities=22% Similarity=0.196 Sum_probs=70.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--CcceEEeCChh------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAV------ 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~------ 76 (320)
.++++||||+|.+|.+++..|++.|. +|++.++++ ++++....++....... ..++....+..
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-------KLALVDLEE--AELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHH
Confidence 36899999999999999999999987 799999864 33443333332111000 01222111121
Q ss_pred -hhcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcC
Q 020875 77 -EACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA-APNCKVLVVAN 132 (320)
Q Consensus 77 -~al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~sn 132 (320)
+.+...|+||+.||..... ..+ ..+.+..|+.....+++.+..+- ...+.+|++|+
T Consensus 80 ~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS 143 (296)
T PRK05872 80 VERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS 143 (296)
T ss_pred HHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 2235689999999974311 112 23456778777777766665431 12356777764
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00043 Score=62.14 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=86.2
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChh--
Q 020875 4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAV-- 76 (320)
Q Consensus 4 ~~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~-- 76 (320)
+.+.++||||+ +.+|..++..|++.|. +|++.+++.+..+.+....++.+... ....++....+..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~ 77 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-------ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEET 77 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCC-------EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHH
Confidence 44688999975 6899999999999887 77777654321122222222221110 1112222211221
Q ss_pred -----hhcCCCcEEEEeCCCCCC-----C--CCCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 77 -----EACTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 77 -----~al~~aDvVi~~ag~~~~-----~--~~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
+.+...|++|+.||.... + ..+. ...+..|+.....+.+.+...-...+++|++|+....
T Consensus 78 ~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~----- 152 (258)
T PRK07370 78 FETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGV----- 152 (258)
T ss_pred HHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccc-----
Confidence 223468999999987431 1 1122 3345666655555444443322123567777753211
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.--..+-+.++..++ +..|+.
T Consensus 153 ----~~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~V 186 (258)
T PRK07370 153 ----RAIPNYNVMGVAKAALEASVRYLAAELG--PKNIRV 186 (258)
T ss_pred ----cCCcccchhhHHHHHHHHHHHHHHHHhC--cCCeEE
Confidence 1223223567777766677777888875 456663
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00035 Score=62.39 Aligned_cols=156 Identities=14% Similarity=0.124 Sum_probs=83.6
Q ss_pred CCCCCCEEEEEcCCC--hhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc----------cchhHHHHHHHhcccCC---C
Q 020875 1 MAKEPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPA----------AEALNGVKMELVDAAFP---L 65 (320)
Q Consensus 1 m~~~~~kI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~----------~~~~~~~~~dl~~~~~~---~ 65 (320)
|+.+.++|.|+||+| .+|.+++..|++.|. +|++.++++. .+... ...++...... .
T Consensus 1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~-------~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 72 (256)
T PRK12748 1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGI-------DIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHM 72 (256)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-------cEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEE
Confidence 566677899999985 699999999999886 7888887511 11111 11222111100 0
Q ss_pred CcceEEeCChh-------hhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEE
Q 020875 66 LKGVVATTDAV-------EACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVV 130 (320)
Q Consensus 66 ~~~v~~~~~~~-------~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~ 130 (320)
..++....+.. +.+...|+||++||...... .+ ....+..|+.....+.+.+.+.-. +...+|++
T Consensus 73 ~~D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 152 (256)
T PRK12748 73 EIDLSQPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINL 152 (256)
T ss_pred ECCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEE
Confidence 11221111111 12345799999998642211 12 234577888877777777654311 23467777
Q ss_pred cCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 131 ANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 131 snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
|.-.. + ...+..-.|+.++.-...+...+++.+.
T Consensus 153 ss~~~--------~-~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 186 (256)
T PRK12748 153 TSGQS--------L-GPMPDELAYAATKGAIEAFTKSLAPELA 186 (256)
T ss_pred CCccc--------c-CCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 64211 0 1122112355555544555556666654
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00032 Score=61.84 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=78.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh-------
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE------- 77 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~------- 77 (320)
|.|+||+|++|.+++..|+++|. +++++++.. .+.++....++.+.... ...++....+..+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 72 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF-------EICVHYHSG-RSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIA 72 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 57999999999999999999987 788777642 22333222233221110 1112211112222
Q ss_pred hcCCCcEEEEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 78 ACTGVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
.+...|.+|+.+|...... .+....+..|+.....+.+.+. +.. +...+|++|+.... .+
T Consensus 73 ~~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~vsS~~~~---------~~ 142 (239)
T TIGR01831 73 EHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRAR-QGGRIITLASVSGV---------MG 142 (239)
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc-CCeEEEEEcchhhc---------cC
Confidence 2335699999998643211 1234467788877766665431 212 34567777764321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.|...-|+.++.-...+-+.++..+
T Consensus 143 ~~~~~~Y~~sK~a~~~~~~~la~e~ 167 (239)
T TIGR01831 143 NRGQVNYSAAKAGLIGATKALAVEL 167 (239)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHH
Confidence 2222245555543334444555554
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=56.71 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=55.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.+||+||| +|.||.+|+..|.+.|+ +|.-+-.. +.+.. ..+... ...... .++.+.++++|+
T Consensus 10 ~l~I~iIG-aGrVG~~La~aL~~ag~-------~v~~v~sr-s~~sa----~~a~~~----~~~~~~-~~~~~~~~~aDl 71 (127)
T PF10727_consen 10 RLKIGIIG-AGRVGTALARALARAGH-------EVVGVYSR-SPASA----ERAAAF----IGAGAI-LDLEEILRDADL 71 (127)
T ss_dssp --EEEEEC-TSCCCCHHHHHHHHTTS-------EEEEESSC-HH-HH----HHHHC------TT------TTGGGCC-SE
T ss_pred ccEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEEeC-Ccccc----cccccc----cccccc-cccccccccCCE
Confidence 48999999 59999999999999987 66554322 11111 111111 111111 246678899999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhh--cCCCeEEEEEcC---cchhhHHHH
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH--AAPNCKVLVVAN---PANTNALIL 141 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~--~~~~~~viv~sn---P~~~~~~~~ 141 (320)
+|++.. + ..+.++++.+..+ -.|+ .+++-++ +++++..+.
T Consensus 72 v~iavp-----D-----------daI~~va~~La~~~~~~~g-~iVvHtSGa~~~~vL~p~~ 116 (127)
T PF10727_consen 72 VFIAVP-----D-----------DAIAEVAEQLAQYGAWRPG-QIVVHTSGALGSDVLAPAR 116 (127)
T ss_dssp EEE-S------C-----------CHHHHHHHHHHCC--S-TT--EEEES-SS--GGGGHHHH
T ss_pred EEEEec-----h-----------HHHHHHHHHHHHhccCCCC-cEEEECCCCChHHhhhhHH
Confidence 999852 1 1346677777776 2133 4555543 566776653
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00042 Score=60.53 Aligned_cols=115 Identities=19% Similarity=0.114 Sum_probs=68.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhh---hcC-
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVE---ACT- 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~---al~- 80 (320)
+++.|+||+|.+|++++..|++.|. +|++++++. +.++. +...... ...++....+..+ .+.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-------~v~~~~r~~--~~~~~----~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-------RVIATARDA--AALAA----LQALGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-------EEEEEECCH--HHHHH----HHhccceEEEecCCCHHHHHHHHHHhcC
Confidence 4899999999999999999998886 899999863 22221 1111100 1112222222222 233
Q ss_pred -CCcEEEEeCCCCCC---C--CCC---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCc
Q 020875 81 -GVNIAVMVGGFPRK---E--GME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANP 133 (320)
Q Consensus 81 -~aDvVi~~ag~~~~---~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP 133 (320)
..|+||+++|.... + ..+ ....+..|+.....+.+.+.++-. ....++++++.
T Consensus 69 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~ 131 (222)
T PRK06953 69 EALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSR 131 (222)
T ss_pred CCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCc
Confidence 48999999987521 1 112 234677888888888777765321 12455666543
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00098 Score=61.14 Aligned_cols=108 Identities=23% Similarity=0.323 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH---HHHHH---hcccCC------CCcceEE
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG---VKMEL---VDAAFP------LLKGVVA 71 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~---~~~dl---~~~~~~------~~~~v~~ 71 (320)
.+.||+|+| +|..|++++..+.++-........+|..+-..+ .+.+ ..-|+ .|...+ ++.++.+
T Consensus 20 ~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee---~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 20 DPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEE---EINGEAEKLTEIINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred CceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEecc---ccCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence 357999999 799999999888754211101112455444322 2222 11222 122222 3467888
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
.+|+.++++|||++|+.. |. +.+..+++.+..+-+|++..|..+
T Consensus 96 v~dl~ea~~dADilvf~v--Ph--------------Qf~~~ic~~l~g~vk~~~~aISL~ 139 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVV--PH--------------QFIPRICEQLKGYVKPGATAISLI 139 (372)
T ss_pred cchHHHHhccCCEEEEeC--Ch--------------hhHHHHHHHHhcccCCCCeEEEee
Confidence 899999999999999973 32 345677888888766666555443
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00091 Score=59.96 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=67.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--C---CCcceEEeCChh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--P---LLKGVVATTDAV--- 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~---~~~~v~~~~~~~--- 76 (320)
.+.++|+||+|.+|.+++..|+++|. .|++.++++ ++++....++..... . ...++....+..
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA-------SVAICGRDE--ERLASAEARLREKFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence 36899999999999999999999887 789999864 334333333322110 0 011221111111
Q ss_pred ----hhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 77 ----EACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 77 ----~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+.+...|++|+.||...... .+ ....+..|.. .++.+.+.+++.. .+.++++|+-
T Consensus 79 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~ 147 (265)
T PRK07062 79 AAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA--AASIVCVNSL 147 (265)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC--CcEEEEeccc
Confidence 12346799999998743211 11 2223444433 4455556565542 3567777653
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00034 Score=62.29 Aligned_cols=156 Identities=10% Similarity=0.030 Sum_probs=86.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh-----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE----- 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~----- 77 (320)
++++|+||+|.+|.+++..|++.|. .|++.+++. +.++....++...... ...++....+..+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-------NVVITGRTK--EKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 5799999999999999999999887 789999864 3333333333221100 0112211112222
Q ss_pred --hcCCCcEEEEeCCCCCC-C--CCC---HHHHHHhhHHHHHHHHHHHhhh--c-CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 78 --ACTGVNIAVMVGGFPRK-E--GME---RKDVMSKNVSIYKAQASALEQH--A-APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 78 --al~~aDvVi~~ag~~~~-~--~~~---r~~~~~~n~~~~~~i~~~i~~~--~-~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
.+...|+||+.+|.... + ..+ ....+..|+.....+.+.+.++ . ...+.++++|.-... .
T Consensus 73 ~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~---------~ 143 (252)
T PRK07677 73 DEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAW---------D 143 (252)
T ss_pred HHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhc---------c
Confidence 13467999999985321 1 122 2345777877777776666432 1 123667777643210 0
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..+..-.|+.++.....+.+.+|+.+.- +..++
T Consensus 144 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~-~~gi~ 176 (252)
T PRK07677 144 AGPGVIHSAAAKAGVLAMTRTLAVEWGR-KYGIR 176 (252)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhCc-ccCeE
Confidence 1111113566666556677777777642 23455
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00069 Score=60.76 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=85.0
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-chhHHHHHHHhcccCCCCcceEEeCCh-----
Q 020875 4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDAAFPLLKGVVATTDA----- 75 (320)
Q Consensus 4 ~~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-~~~~~~~~dl~~~~~~~~~~v~~~~~~----- 75 (320)
+.+.++||||+ +.+|.+++..|++.|. .|++.++++.. +.++....++.+. .....++....+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-------~v~l~~r~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-------ELAVTYLNDKARPYVEPLAEELDAP-IFLPLDVREPGQLEAVFA 80 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-------EEEEEeCChhhHHHHHHHHHhhccc-eEEecCcCCHHHHHHHHH
Confidence 34688999987 4899999999999886 78888886421 1122111222110 0011122211111
Q ss_pred --hhhcCCCcEEEEeCCCCCC-----C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 76 --VEACTGVNIAVMVGGFPRK-----E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 76 --~~al~~aDvVi~~ag~~~~-----~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+.+...|++|+.||.... + ..+ ..+.+..|+.....+.+.+..+-.....++++|.....
T Consensus 81 ~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~------- 153 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAE------- 153 (258)
T ss_pred HHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccc-------
Confidence 1223467999999987431 0 112 23456777766666665544432123456666643211
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|....|+.++..-..+-+.++..++ +..|+.
T Consensus 154 --~~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~V 187 (258)
T PRK07533 154 --KVVENYNLMGPVKAALESSVRYLAAELG--PKGIRV 187 (258)
T ss_pred --cCCccchhhHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 0112112456666656666677777765 345553
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00044 Score=60.93 Aligned_cols=147 Identities=13% Similarity=0.042 Sum_probs=80.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCCh-------hh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDA-------VE 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~-------~~ 77 (320)
++++|+||+|.+|.+++..|+++|. +|++.++++. ... .++.+... ....++....+. .+
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQ-------PVIVSYRTHY--PAI---DGLRQAGAQCIQADFSTNAGIMAFIDELKQ 70 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCch--hHH---HHHHHcCCEEEEcCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999887 7889998642 111 11211110 011122111111 12
Q ss_pred hcCCCcEEEEeCCCCCC--CC-CC---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 78 ACTGVNIAVMVGGFPRK--EG-ME---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~--~~-~~---r~~~~~~n~~~~~~i~----~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
.+...|++|+.||.... +. .+ ..+.+..|+.....+. +.+++.....+.++++|.... . .+
T Consensus 71 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~-------~--~~ 141 (236)
T PRK06483 71 HTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVV-------E--KG 141 (236)
T ss_pred hCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhh-------c--cC
Confidence 23458999999986421 11 12 2334556666554443 444332211345666654221 1 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+..-.|+.++..-..+-+.+++.+.
T Consensus 142 ~~~~~~Y~asKaal~~l~~~~a~e~~ 167 (236)
T PRK06483 142 SDKHIAYAASKAALDNMTLSFAAKLA 167 (236)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHC
Confidence 23223577777766777777888875
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0004 Score=63.03 Aligned_cols=116 Identities=19% Similarity=0.185 Sum_probs=67.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh-----
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA----- 78 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a----- 78 (320)
.+.|+|| |.+|.+++..|. .|. +|++.|+++ ++++....++...... +..++....+..++
T Consensus 4 ~~lItGa-~gIG~~la~~l~-~G~-------~Vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 4 VVVVIGA-GGIGQAIARRVG-AGK-------KVLLADYNE--ENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred EEEEECC-ChHHHHHHHHHh-CCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 4677775 899999999986 665 899999864 3333222233221100 11122211122222
Q ss_pred -cCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 79 -CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 79 -l~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
+...|++|+.||... ...+..+.+..|+.....+++.+.+.-.++..++++++..
T Consensus 73 ~~g~id~li~nAG~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~ 128 (275)
T PRK06940 73 TLGPVTGLVHTAGVSP-SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS 128 (275)
T ss_pred hcCCCCEEEECCCcCC-chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence 246899999999753 2234566788898887777777665421233455665443
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.002 Score=57.55 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CC---CCcceEEeCCh---h
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP---LLKGVVATTDA---V 76 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~---~~~~v~~~~~~---~ 76 (320)
+.++++|+||+|.+|.+++..|++.|. +|++.++++ ++++....++.... .. ...++....+. .
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-------HLHLVARDA--DALEALAADLRAAHGVDVAVHALDLSSPEAREQLA 76 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHH
Confidence 457999999999999999999999886 799999864 33333333332211 00 01122111111 2
Q ss_pred hhcCCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHH----HHhhhcCCCeEEEEEcCc
Q 020875 77 EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQAS----ALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~----~i~~~~~~~~~viv~snP 133 (320)
+.+...|++|+++|..... ..+. ...+..|+.....+.+ .+++.. ...++++|+-
T Consensus 77 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~iss~ 141 (259)
T PRK06125 77 AEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG--SGVIVNVIGA 141 (259)
T ss_pred HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEecCc
Confidence 2345789999999874321 1122 3345667665544444 444432 3567766653
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00045 Score=64.44 Aligned_cols=76 Identities=28% Similarity=0.307 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc----cCCCCcceEEeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA----AFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~----~~~~~~~v~~~~~~~~al 79 (320)
.+|||+|+| +|.+|+.++..|+..|+ +|.++++++ ++++.....-.+. ......++..+++..+++
T Consensus 3 ~~m~I~iIG-~G~mG~~ia~~L~~~G~-------~V~~~~r~~--~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~ 72 (328)
T PRK14618 3 HGMRVAVLG-AGAWGTALAVLAASKGV-------PVRLWARRP--EFAAALAAERENREYLPGVALPAELYPTADPEEAL 72 (328)
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence 367999999 69999999999999887 899999863 3332221110000 111122355666777888
Q ss_pred CCCcEEEEeC
Q 020875 80 TGVNIAVMVG 89 (320)
Q Consensus 80 ~~aDvVi~~a 89 (320)
+++|+||++.
T Consensus 73 ~~aD~Vi~~v 82 (328)
T PRK14618 73 AGADFAVVAV 82 (328)
T ss_pred cCCCEEEEEC
Confidence 9999999975
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.002 Score=57.79 Aligned_cols=159 Identities=11% Similarity=0.092 Sum_probs=85.2
Q ss_pred CCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-ccchhHHHHHHHhccc-CCCCcceEEeCCh-----
Q 020875 5 PVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVDAA-FPLLKGVVATTDA----- 75 (320)
Q Consensus 5 ~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~----- 75 (320)
.+.++||||+ +-+|.+++..|++.|. .|++.+++. +.+.++....++.... .....++....+.
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~-------~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 79 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGA-------KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFE 79 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCC-------EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH
Confidence 4689999986 7999999999999986 788887642 1122222222221000 0011222222111
Q ss_pred --hhhcCCCcEEEEeCCCCCC-----C--CCCHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 76 --VEACTGVNIAVMVGGFPRK-----E--GMERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 76 --~~al~~aDvVi~~ag~~~~-----~--~~~r~---~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+.+...|++|+.||.... + ..+.+ ..+..|......+.+.+...-.+.+.+|++|+-...
T Consensus 80 ~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~------- 152 (257)
T PRK08594 80 TIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE------- 152 (257)
T ss_pred HHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc-------
Confidence 1223458999999986421 1 12222 234556555444444443322134677887754321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|..-.|+.++.--..|-+.+|+.+. +..|+.
T Consensus 153 --~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrv 186 (257)
T PRK08594 153 --RVVQNYNVMGVAKASLEASVKYLANDLG--KDGIRV 186 (257)
T ss_pred --cCCCCCchhHHHHHHHHHHHHHHHHHhh--hcCCEE
Confidence 1122222567777777777777887765 345653
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00084 Score=62.09 Aligned_cols=125 Identities=20% Similarity=0.249 Sum_probs=73.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.+|+-++..|.+.|. +|.++.+++..+++...-..+.+..... ..........+.+..+|+|
T Consensus 1 mkI~IlG-aGAvG~l~g~~L~~~g~-------~V~~~~R~~~~~~l~~~GL~i~~~~~~~-~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILG-AGAIGSLLGARLAKAGH-------DVTLLVRSRRLEALKKKGLRIEDEGGNF-TTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEEC-CcHHHHHHHHHHHhCCC-------eEEEEecHHHHHHHHhCCeEEecCCCcc-ccccccccChhhcCCCCEE
Confidence 7999999 69999999999999884 6777776531122221112222221100 1112223345667799999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE-EEeehh
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRL 159 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i-~~~t~l 159 (320)
|++.-. .+ ..+.++.+..+..++.+++.+-|=.+..- .+.+. +|.+++ .|.|..
T Consensus 72 iv~vKa----~q------------~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~---~~~~~il~G~~~~ 126 (307)
T COG1893 72 IVTVKA----YQ------------LEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKI---LPKETVLGGVTTH 126 (307)
T ss_pred EEEecc----cc------------HHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHh---CCcceEEEEEeee
Confidence 998632 11 34566777777656677888888876654 33442 444454 444433
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=58.04 Aligned_cols=117 Identities=17% Similarity=0.178 Sum_probs=64.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCCh-------h
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA-------V 76 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~-------~ 76 (320)
.++|+||+|++|++++..|+..|. ++++..+.. .+.++....++...... ...++....+. .
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY-------RVAANCGPN-EERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVE 73 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 578999999999999999999887 777776621 22222222222211100 01112111111 2
Q ss_pred hhcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEEcCc
Q 020875 77 EACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~----i~~~i~~~~~~~~~viv~snP 133 (320)
+.+...|+||+.+|..... ..+ ..+.+..|...... +.+.+++.. ..+++++|..
T Consensus 74 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~iss~ 138 (242)
T TIGR01829 74 AELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERG--WGRIINISSV 138 (242)
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcch
Confidence 2234689999999865321 111 23345667765444 444444442 3567777754
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=59.49 Aligned_cols=156 Identities=15% Similarity=0.028 Sum_probs=83.9
Q ss_pred CCEEEEEcCCC-hhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--C---CCcceEEeCChhhh
Q 020875 5 PVRVLVTGAAG-QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--P---LLKGVVATTDAVEA 78 (320)
Q Consensus 5 ~~kI~IiGA~G-~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~---~~~~v~~~~~~~~a 78 (320)
.++++||||+| .+|.+++..|+..|. +|++.|++. ++++....++..... . ...++....+..++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~-------~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 87 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA-------RVVISDIHE--RRLGETADELAAELGLGRVEAVVCDVTSEAQVDAL 87 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHH
Confidence 36899999887 599999999999887 788888763 333333333322100 0 01122111112222
Q ss_pred -------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHH
Q 020875 79 -------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 79 -------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~ 141 (320)
+...|++|+.+|..... ..+ ..+.+..|+.....+++.+. +.. ....+++++.....
T Consensus 88 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~g~iv~~ss~~~~----- 161 (262)
T PRK07831 88 IDAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARG-HGGVIVNNASVLGW----- 161 (262)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEeCchhhc-----
Confidence 24679999999864311 111 22345566665555444433 321 13556665543211
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...+..-.|+.++.-...+-+.+|..+. +..|+.
T Consensus 162 ----~~~~~~~~Y~~sKaal~~~~~~la~e~~--~~gI~v 195 (262)
T PRK07831 162 ----RAQHGQAHYAAAKAGVMALTRCSALEAA--EYGVRI 195 (262)
T ss_pred ----CCCCCCcchHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 1122223567666666667666777654 445653
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0043 Score=55.78 Aligned_cols=158 Identities=12% Similarity=0.069 Sum_probs=84.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CC---CCcceEEeCCh----h-
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP---LLKGVVATTDA----V- 76 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~---~~~~v~~~~~~----~- 76 (320)
..++||||+|.+|.+++..|++.|. +|++.+++. .+.++....++.+.. .. +..++....+. .
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~-------~V~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~ 73 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGY-------RVVLHYHRS-AAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEA 73 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCC-------eEEEEcCCc-HHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHH
Confidence 3688999999999999999999887 787765432 233443333443211 00 11223222111 1
Q ss_pred ------hhcCCCcEEEEeCCCCCC------CCCC-----------HHHHHHhhHHHHHHHHHHHhhhc--------CCCe
Q 020875 77 ------EACTGVNIAVMVGGFPRK------EGME-----------RKDVMSKNVSIYKAQASALEQHA--------APNC 125 (320)
Q Consensus 77 ------~al~~aDvVi~~ag~~~~------~~~~-----------r~~~~~~n~~~~~~i~~~i~~~~--------~~~~ 125 (320)
+.+...|+||+.||.... +..+ ..+.+..|+.....+.+.+.+.- ....
T Consensus 74 ~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (267)
T TIGR02685 74 IIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNL 153 (267)
T ss_pred HHHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCe
Confidence 123468999999986321 1111 23456777665555554433221 0123
Q ss_pred EEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 126 ~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.++++++.... ...+..-.|+.++.-...+...++..++ +..|+..
T Consensus 154 ~iv~~~s~~~~---------~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~ 199 (267)
T TIGR02685 154 SIVNLCDAMTD---------QPLLGFTMYTMAKHALEGLTRSAALELA--PLQIRVN 199 (267)
T ss_pred EEEEehhhhcc---------CCCcccchhHHHHHHHHHHHHHHHHHHh--hhCeEEE
Confidence 45555543211 1122223567777666667777777764 4556644
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0018 Score=59.07 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=47.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.|||+++| +|.+|++++..|+..+... ..++.++|++. .++++. +.... .+....+..++++++|+
T Consensus 3 ~mkI~~IG-~G~mG~aia~~l~~~g~~~---~~~v~v~~r~~-~~~~~~----l~~~~-----g~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 3 IQNISFLG-AGSIAEAIIGGLLHANVVK---GEQITVSNRSN-ETRLQE----LHQKY-----GVKGTHNKKELLTDANI 68 (279)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCC---cceEEEECCCC-HHHHHH----HHHhc-----CceEeCCHHHHHhcCCE
Confidence 36999999 6999999999999887321 12788888753 122222 22110 12334466677889999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 69 Vilav 73 (279)
T PRK07679 69 LFLAM 73 (279)
T ss_pred EEEEe
Confidence 99985
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=59.79 Aligned_cols=100 Identities=13% Similarity=0.215 Sum_probs=62.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.+|++++..|.+.+... ..++.++|++. ++++. +.+.. ..+....+..+.++++|+|
T Consensus 1 m~I~iIG-~G~mG~ala~~L~~~g~~~---~~~v~v~~r~~--~~~~~----~~~~~----~g~~~~~~~~~~~~~aDiV 66 (273)
T PRK07680 1 MNIGFIG-TGNMGTILIEAFLESGAVK---PSQLTITNRTP--AKAYH----IKERY----PGIHVAKTIEEVISQSDLI 66 (273)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCC---cceEEEECCCH--HHHHH----HHHHc----CCeEEECCHHHHHHhCCEE
Confidence 5899999 6999999999999887421 12688999863 33322 21110 1234445666778999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
|++.- | ..+.++++.+..+-.++..+|.++|.+.
T Consensus 67 ilav~-p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 67 FICVK-P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred EEecC-H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 99861 1 1123444455444324556777888763
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=59.68 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=85.0
Q ss_pred CEEEEEcCCC--hhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-c--CCCCcceEEeCCh-----
Q 020875 6 VRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-A--FPLLKGVVATTDA----- 75 (320)
Q Consensus 6 ~kI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~--~~~~~~v~~~~~~----- 75 (320)
+.++||||++ .||.+++..|++.|. .|++.++++ +..+ ...++.+. . .....++....+.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga-------~V~~~~r~~--~~~~-~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGA-------ELAFTYQGE--ALGK-RVKPLAESLGSDFVLPCDVEDIASVDAVFE 77 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCC-------EEEEecCch--HHHH-HHHHHHHhcCCceEEeCCCCCHHHHHHHHH
Confidence 5789999875 899999999999987 788888753 1111 11122111 0 0011222221111
Q ss_pred --hhhcCCCcEEEEeCCCCCC-----C--CCCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 76 --VEACTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 76 --~~al~~aDvVi~~ag~~~~-----~--~~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+.+...|++|+.||.... + ..+. ...+..|+.....+.+.+..+-...+.+|++|+....
T Consensus 78 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~------- 150 (271)
T PRK06505 78 ALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGST------- 150 (271)
T ss_pred HHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCcc-------
Confidence 1223468999999987431 1 1222 2345667665555544443321123567777653321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|..-.|+.++.-...+-+.+|..+. +..|+.
T Consensus 151 --~~~~~~~~Y~asKaAl~~l~r~la~el~--~~gIrV 184 (271)
T PRK06505 151 --RVMPNYNVMGVAKAALEASVRYLAADYG--PQGIRV 184 (271)
T ss_pred --ccCCccchhhhhHHHHHHHHHHHHHHHh--hcCeEE
Confidence 1122223567777777777778888864 455653
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0011 Score=67.60 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=81.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++++|+||+|.+|.+++..|+++|. +|+++++++ +.++....++...... ...++....+..+++
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 441 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-------TVFLVARNG--EALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKD 441 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 35899999999999999999999886 899999864 3333333333221110 011222222223333
Q ss_pred -----CCCcEEEEeCCCCCCCC--------CCHHHHHHhhHHHHHHHHH----HHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 80 -----TGVNIAVMVGGFPRKEG--------MERKDVMSKNVSIYKAQAS----ALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~~--------~~r~~~~~~n~~~~~~i~~----~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
...|++|+.||...... ++....+..|+.....+.+ .+++.+ ...+|++|+-...
T Consensus 442 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------ 513 (657)
T PRK07201 442 ILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR--FGHVVNVSSIGVQ------ 513 (657)
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CCEEEEECChhhc------
Confidence 36899999998642111 1123456677766555544 444432 3567777753211
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.+.|..-.|+.++.....+...++..+
T Consensus 514 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~ 540 (657)
T PRK07201 514 ---TNAPRFSAYVASKAALDAFSDVAASET 540 (657)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 112221235555555555555566554
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0012 Score=60.07 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=44.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| .|.+|..++..|...|+ +|.++|+++ +.++ ...+. .. +....+..++++++|+|
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-------~V~~~d~~~--~~~~-~a~~~--g~------~~~~~~~~~~~~~aDlV 61 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-------TVYGVSRRE--STCE-RAIER--GL------VDEASTDLSLLKDCDLV 61 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-------EEEEEECCH--HHHH-HHHHC--CC------cccccCCHhHhcCCCEE
Confidence 5899999 79999999999998886 899999863 2222 11111 10 11111223568999999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 62 ilav 65 (279)
T PRK07417 62 ILAL 65 (279)
T ss_pred EEcC
Confidence 9985
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.001 Score=59.37 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=85.3
Q ss_pred CCCC--CCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCCh
Q 020875 1 MAKE--PVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDA 75 (320)
Q Consensus 1 m~~~--~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~ 75 (320)
|+++ .+.++||||+ +.||..++..|++.|. +|++.++++ ++.....++..... .+..++....+.
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~-------~Vi~~~r~~---~~~~~~~~~~~~~~~~~~~Dl~~~~~v 70 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGA-------TVIYTYQND---RMKKSLQKLVDEEDLLVECDVASDESI 70 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCC-------EEEEecCch---HHHHHHHhhccCceeEEeCCCCCHHHH
Confidence 4444 3689999987 6899999999999987 788888752 22222222221110 111222221111
Q ss_pred -------hhhcCCCcEEEEeCCCCCC-----C--CCCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH
Q 020875 76 -------VEACTGVNIAVMVGGFPRK-----E--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 76 -------~~al~~aDvVi~~ag~~~~-----~--~~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~ 138 (320)
.+.+...|++|+.||.... + ..+. ...+..|+.....+.+.+...-...+++|++|.-...
T Consensus 71 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~-- 148 (252)
T PRK06079 71 ERAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSE-- 148 (252)
T ss_pred HHHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcc--
Confidence 1223458999999986431 1 1122 2345566655544444444332123567777642211
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|..-.|+.++.--..+-+.+|..+. +..|+.
T Consensus 149 -------~~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~v 182 (252)
T PRK06079 149 -------RAIPNYNVMGIAKAALESSVRYLARDLG--KKGIRV 182 (252)
T ss_pred -------ccCCcchhhHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 1122112456666666677777777764 445653
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00085 Score=59.66 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=79.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhh---hc--
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVE---AC-- 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~---al-- 79 (320)
++|+|+||+|++|.+++..|+++|. +|++++++. ++++. +.+... ....++....+..+ .+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-------~v~~~~r~~--~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 69 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-------RVLAACRKP--DDVAR----MNSLGFTGILLDLDDPESVERAADEVIA 69 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHhHH----HHhCCCeEEEeecCCHHHHHHHHHHHHH
Confidence 4799999999999999999998886 788888763 22221 111100 00111111111111 11
Q ss_pred ---CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 80 ---TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 80 ---~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
...|.+|+.+|..... ..+ ..+.+..|+.....+ ++.+++.. . ..++++++-... .
T Consensus 70 ~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~-~~iv~~ss~~~~---------~ 138 (256)
T PRK08017 70 LTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHG-E-GRIVMTSSVMGL---------I 138 (256)
T ss_pred hcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-C-CEEEEEcCcccc---------c
Confidence 3578999998864311 112 234567777655544 55555543 2 456666643211 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+.+....|+.++.....+...++..+. +..++..
T Consensus 139 ~~~~~~~Y~~sK~~~~~~~~~l~~~~~--~~~i~v~ 172 (256)
T PRK08017 139 STPGRGAYAASKYALEAWSDALRMELR--HSGIKVS 172 (256)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHh--hcCCEEE
Confidence 122222456665555555444544433 3345543
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0013 Score=59.38 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=46.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
+|||+|+| +|.+|+.++..|.+.+.. ..++.++|+++ ++++. +.+.. .+....+..+.++++|+
T Consensus 2 mm~I~iIG-~G~mG~~la~~l~~~g~~----~~~v~v~~r~~--~~~~~----~~~~~-----g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 2 MKKIGFIG-GGNMASAIIGGLLASGVP----AKDIIVSDPSP--EKRAA----LAEEY-----GVRAATDNQEAAQEADV 65 (267)
T ss_pred CCEEEEEe-chHHHHHHHHHHHhCCCC----cceEEEEcCCH--HHHHH----HHHhc-----CCeecCChHHHHhcCCE
Confidence 57999999 699999999999887731 12688999863 33221 21110 12233455667889999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 66 Vil~v 70 (267)
T PRK11880 66 VVLAV 70 (267)
T ss_pred EEEEc
Confidence 99985
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0017 Score=59.30 Aligned_cols=159 Identities=19% Similarity=0.125 Sum_probs=84.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-------ccchhHHHHHHHhcccCC---CCcceEEeCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-------AAEALNGVKMELVDAAFP---LLKGVVATTD 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-------~~~~~~~~~~dl~~~~~~---~~~~v~~~~~ 74 (320)
.+.+.||||++.||.+++..|++.|. .|++.+++. ..+.+.....++...... ...++....+
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~-------~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~ 78 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGA-------RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDG 78 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHH
Confidence 46899999999999999999999886 788888653 012233333333221111 1112222111
Q ss_pred h-------hhhcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcC----CCeEEEEEcCc
Q 020875 75 A-------VEACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAA----PNCKVLVVANP 133 (320)
Q Consensus 75 ~-------~~al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~----~~~~viv~snP 133 (320)
. .+.+...|++|+.||..... ..+ ....+..|+.....+.+.+ .+... .++.+|++|+.
T Consensus 79 v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~ 158 (286)
T PRK07791 79 AANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSG 158 (286)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCch
Confidence 1 12235679999999975321 112 2345667776655444443 32210 13567777754
Q ss_pred chhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
... .+.+..-.|+.++--...+-+.+|..++ +..|+.
T Consensus 159 ~~~---------~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrV 195 (286)
T PRK07791 159 AGL---------QGSVGQGNYSAAKAGIAALTLVAAAELG--RYGVTV 195 (286)
T ss_pred hhC---------cCCCCchhhHHHHHHHHHHHHHHHHHHH--HhCeEE
Confidence 321 1122112455555544455556666654 345663
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0021 Score=58.58 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=60.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|+||+|+| +|.+|++++..|.+.+... ..+|.+++++. .++++. +.... ..+..+.+..++++++|+
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~---~~~V~~~~r~~-~~~~~~----l~~~~----~~~~~~~~~~e~~~~aDv 67 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVAT---PEEIILYSSSK-NEHFNQ----LYDKY----PTVELADNEAEIFTKCDH 67 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCC---cccEEEEeCCc-HHHHHH----HHHHc----CCeEEeCCHHHHHhhCCE
Confidence 36899999 6999999999999877321 12788888753 122221 11110 123344566677899999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
||++... ..+.++++.+..+-.++..+|.+.+-+
T Consensus 68 Vilavpp----------------~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 68 SFICVPP----------------LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred EEEecCH----------------HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 9987531 123455555554432344566666654
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0021 Score=59.42 Aligned_cols=74 Identities=28% Similarity=0.262 Sum_probs=49.6
Q ss_pred CCCCC-CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc
Q 020875 1 MAKEP-VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~~-~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al 79 (320)
|+..+ +||+|+| +|.+|..++..|...|+. .+|.++|+++ +.++ ..... . .......+..+++
T Consensus 1 ~~~~~~~~I~IIG-~G~mG~sla~~l~~~g~~-----~~V~~~dr~~--~~~~-~a~~~---g----~~~~~~~~~~~~~ 64 (307)
T PRK07502 1 MSAPLFDRVALIG-IGLIGSSLARAIRRLGLA-----GEIVGADRSA--ETRA-RAREL---G----LGDRVTTSAAEAV 64 (307)
T ss_pred CCccCCcEEEEEe-eCHHHHHHHHHHHhcCCC-----cEEEEEECCH--HHHH-HHHhC---C----CCceecCCHHHHh
Confidence 66654 7999999 699999999999987752 2789999864 2222 11111 1 0111223556778
Q ss_pred CCCcEEEEeCC
Q 020875 80 TGVNIAVMVGG 90 (320)
Q Consensus 80 ~~aDvVi~~ag 90 (320)
+++|+||++..
T Consensus 65 ~~aDvViiavp 75 (307)
T PRK07502 65 KGADLVILCVP 75 (307)
T ss_pred cCCCEEEECCC
Confidence 99999999863
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00046 Score=60.41 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=65.0
Q ss_pred EEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C-CCCcceEEeCChhhhc---CCCc
Q 020875 9 LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEAC---TGVN 83 (320)
Q Consensus 9 ~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~al---~~aD 83 (320)
.|+||+|++|++++..|+++|. +|++.++++ +++.....++.... . ....++....+..+++ ...|
T Consensus 1 lItGas~~iG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id 71 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGA-------RVTIASRSR--DRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFD 71 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCC
Confidence 4899999999999999999986 799999863 33333223332110 0 0111222222233333 3479
Q ss_pred EEEEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 84 IAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 84 vVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
++|+.+|...... ....+.+..|+.....+.+.. ... ....+|++|
T Consensus 72 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~-~~~-~~g~iv~~s 123 (230)
T PRK07041 72 HVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAA-RIA-PGGSLTFVS 123 (230)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhh-hhc-CCeEEEEEC
Confidence 9999998643211 113345677877777777733 222 335666665
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00056 Score=56.13 Aligned_cols=120 Identities=14% Similarity=0.235 Sum_probs=70.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH---HHHhcccCCCCcceE-EeCChhhhcCCCc
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK---MELVDAAFPLLKGVV-ATTDAVEACTGVN 83 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~---~dl~~~~~~~~~~v~-~~~~~~~al~~aD 83 (320)
|+|+| +|.+|..++..|.+.++ +|.++++.+ .++... ..+.+.......... ......+....+|
T Consensus 1 I~I~G-~GaiG~~~a~~L~~~g~-------~V~l~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIG-AGAIGSLYAARLAQAGH-------DVTLVSRSP---RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEES-TSHHHHHHHHHHHHTTC-------EEEEEESHH---HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEEC-cCHHHHHHHHHHHHCCC-------ceEEEEccc---cHHhhhheeEEEEecccceecccccccCcchhccCCCc
Confidence 78999 59999999999999887 899999852 222211 111111100000111 1122224678999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE-EEeeh
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTR 158 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i-~~~t~ 158 (320)
+||++.-.. ...+.++.++.+..++..++.+-|=.+..-.+ .++ +|+.++ .+.+.
T Consensus 70 ~viv~vKa~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l-~~~---~~~~~v~~g~~~ 125 (151)
T PF02558_consen 70 LVIVAVKAY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVL-AEY---FPRPRVLGGVTT 125 (151)
T ss_dssp EEEE-SSGG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHH-HCH---STGSGEEEEEEE
T ss_pred EEEEEeccc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHH-HHH---cCCCcEEEEEEe
Confidence 999985211 12456677778776777788888977655433 332 455565 44444
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=59.64 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=84.1
Q ss_pred CEEEEEcCCC--hhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChhh---
Q 020875 6 VRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVE--- 77 (320)
Q Consensus 6 ~kI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~--- 77 (320)
+.++||||++ .||.+++..|++.|. .|++.+++. ++.....++..... .+..++....+..+
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~-------~vil~~r~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGA-------ELAFTYQND---KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCC-------EEEEEecch---hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHH
Confidence 5788999864 799999999999987 788888752 22222223322110 11122222222221
Q ss_pred ----hcCCCcEEEEeCCCCCCC--------CCCHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 78 ----ACTGVNIAVMVGGFPRKE--------GMERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 78 ----al~~aDvVi~~ag~~~~~--------~~~r~---~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
.+...|++|+.||+.... ..+.+ ..+..|+.....+.+.+...-.++..++++|+-...
T Consensus 77 ~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~------ 150 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------ 150 (262)
T ss_pred HHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC------
Confidence 233579999999864211 11222 345567655444444443321133567777643210
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|..-.|+.++.--..+-+.+|..+. +.+|+.
T Consensus 151 ---~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrV 184 (262)
T PRK07984 151 ---RAIPNYNVMGLAKASLEANVRYMANAMG--PEGVRV 184 (262)
T ss_pred ---CCCCCcchhHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 1122222467777767777777888765 456663
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0024 Score=57.65 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=46.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE-ecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~-D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|||+++| .|.+|++++..|++.++.. ..+|+++ |+++ ++++ .+.+. .+....+..++++++|+
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~---~~~i~v~~~r~~--~~~~----~~~~~------g~~~~~~~~e~~~~aDv 64 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVP---PSRISTADDSNP--ARRD----VFQSL------GVKTAASNTEVVKSSDV 64 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCC---cceEEEEeCCCH--HHHH----HHHHc------CCEEeCChHHHHhcCCE
Confidence 6899999 7999999999999887531 1367788 7653 3322 12211 23334456677889999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 65 Vil~v 69 (266)
T PLN02688 65 IILAV 69 (266)
T ss_pred EEEEE
Confidence 99986
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0035 Score=56.26 Aligned_cols=155 Identities=11% Similarity=0.115 Sum_probs=86.2
Q ss_pred CEEEEEcCCC--hhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCC--CCcceEEeCCh-----
Q 020875 6 VRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP--LLKGVVATTDA----- 75 (320)
Q Consensus 6 ~kI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~--~~~~v~~~~~~----- 75 (320)
+.++||||++ -+|.+++..|++.|. .|++.++++ .......++... ... ...++....+.
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~-------~v~~~~r~~---~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~ 78 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGA-------ELWFTYQSE---VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFD 78 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCC-------EEEEEeCch---HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHH
Confidence 4689999876 699999999999886 788888652 111122223211 100 01122221111
Q ss_pred --hhhcCCCcEEEEeCCCCCC-----C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 76 --VEACTGVNIAVMVGGFPRK-----E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 76 --~~al~~aDvVi~~ag~~~~-----~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+.+...|++|+.+|.... + ..+ ....+..|+.....+.+.....-...+++|++++....
T Consensus 79 ~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~------- 151 (260)
T PRK06603 79 DIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAE------- 151 (260)
T ss_pred HHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccc-------
Confidence 1224568999999886421 1 112 23355667666555555443322123677777754321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.-...|-+.+|..+. +..|+.
T Consensus 152 --~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrV 185 (260)
T PRK06603 152 --KVIPNYNVMGVAKAALEASVKYLANDMG--ENNIRV 185 (260)
T ss_pred --cCCCcccchhhHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1223223577777777778888888775 455663
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00096 Score=58.85 Aligned_cols=118 Identities=18% Similarity=0.147 Sum_probs=62.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEE-EecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHM-LDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l-~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
..+.|+||+|++|++++..|++.|+ +|++ +++++ ++......++...... ...++....+..++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~-------~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~ 72 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY-------TVAVNYQQNL--HAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTA 72 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCCh--HHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHH
Confidence 3799999999999999999999886 6665 34432 3333222333221100 11122222222222
Q ss_pred ----cCCCcEEEEeCCCCCCC----CCC---HHHHHHhhHHHHHHHHHHHhhh-----cCCCeEEEEEcC
Q 020875 79 ----CTGVNIAVMVGGFPRKE----GME---RKDVMSKNVSIYKAQASALEQH-----AAPNCKVLVVAN 132 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~----~~~---r~~~~~~n~~~~~~i~~~i~~~-----~~~~~~viv~sn 132 (320)
....|+||+.+|..... ..+ ....+..|+.....+.+.+... +.....+|++|+
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS 142 (247)
T PRK09730 73 IDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSS 142 (247)
T ss_pred HHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 33568999999864211 112 2245667776665444433222 111245676664
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00078 Score=74.46 Aligned_cols=176 Identities=11% Similarity=0.060 Sum_probs=92.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchh-HHHHHHHhccc----------CCCCcceEE-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL-NGVKMELVDAA----------FPLLKGVVA- 71 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~-~~~~~dl~~~~----------~~~~~~v~~- 71 (320)
++++|.||||+||+|++++..|+..+-. ...+|+...+..+.... +.....+.+.. .....++..
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~---~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~ 1046 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSN---SNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKE 1046 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCC---CCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCc
Confidence 3579999999999999999999876510 00266666664321111 10000000000 000111110
Q ss_pred ----e-CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH--H-----
Q 020875 72 ----T-TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA--L----- 139 (320)
Q Consensus 72 ----~-~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~--~----- 139 (320)
. ..+.+...++|+|||+|+... ......++...|+..+.++++.+.+.. . .+++.+|. ..+.. .
T Consensus 1047 ~lgl~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~-~-~~~v~vSS-~~v~~~~~~~~~~ 1122 (1389)
T TIGR03443 1047 KFGLSDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGK-A-KQFSFVSS-TSALDTEYYVNLS 1122 (1389)
T ss_pred cCCcCHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCC-C-ceEEEEeC-eeecCcccccchh
Confidence 0 112344568999999987543 223344555679999999999998764 2 24555553 21110 0
Q ss_pred --HHHHHCCCCCC-----------CcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 140 --ILKEFAPSIPA-----------KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 140 --~~~~~~~~~~~-----------~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
....-..+++. ..-|+.++.-..++....++ .|++..-+|...|+|.
T Consensus 1123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~ 1182 (1389)
T TIGR03443 1123 DELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGD 1182 (1389)
T ss_pred hhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccC
Confidence 00000001111 11256666666666555544 4887777776667774
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.001 Score=61.64 Aligned_cols=119 Identities=11% Similarity=-0.002 Sum_probs=67.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcC-cCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCChh-----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAV----- 76 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~~~----- 76 (320)
+.++||||++.+|.+++..|+.+| . .|++.++++ ++++....++....... ..++....+..
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~-------~V~l~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 74 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEW-------HVIMACRDF--LKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQ 74 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCC-------EEEEEeCCH--HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 478999999999999999999988 6 788888764 33332222332111000 01221111111
Q ss_pred --hhcCCCcEEEEeCCCCCCC----CCCH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 77 --EACTGVNIAVMVGGFPRKE----GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 77 --~al~~aDvVi~~ag~~~~~----~~~r---~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+.+...|++|+.||+.... ..+. ...+..|+.. ++.+.+.+++.....+++|++|+-
T Consensus 75 ~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~ 144 (314)
T TIGR01289 75 FRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSI 144 (314)
T ss_pred HHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecC
Confidence 1134689999999873211 1122 3345677655 444566665542113577777753
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0028 Score=57.44 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=86.8
Q ss_pred CEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc-cchhHHHHHHHhcccCCCCcceEEeCChh------
Q 020875 6 VRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPA-AEALNGVKMELVDAAFPLLKGVVATTDAV------ 76 (320)
Q Consensus 6 ~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~-~~~~~~~~~dl~~~~~~~~~~v~~~~~~~------ 76 (320)
++++||||+ +-||.+++..|++.|. .|++.++++. .++++....++.. ......++....+..
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~-------~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~~~~~v~~~~~~~ 82 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGA-------ELAFTYQGDALKKRVEPLAAELGA-FVAGHCDVTDEASIDAVFETL 82 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEcCchHHHHHHHHHHHhcCC-ceEEecCCCCHHHHHHHHHHH
Confidence 579999986 6899999999999987 7888776421 1222211111110 001111222111111
Q ss_pred -hhcCCCcEEEEeCCCCCC-----C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 77 -EACTGVNIAVMVGGFPRK-----E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 77 -~al~~aDvVi~~ag~~~~-----~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
+.+...|++|+.||+... + ..+ ....+..|+.....+++.+.+.-..++.+|++|.....
T Consensus 83 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~--------- 153 (272)
T PRK08159 83 EKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE--------- 153 (272)
T ss_pred HHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc---------
Confidence 223468999999987431 1 112 23456678766666666555432133567777643210
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|....|+.++.-...+-+.++..+. +..|+.
T Consensus 154 ~~~p~~~~Y~asKaal~~l~~~la~el~--~~gIrV 187 (272)
T PRK08159 154 KVMPHYNVMGVAKAALEASVKYLAVDLG--PKNIRV 187 (272)
T ss_pred cCCCcchhhhhHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1223223577777777777777888765 455653
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0016 Score=58.19 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=82.8
Q ss_pred EEEEEcCCChhHHHHHHHHHh----cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-----CCcceEEeCChhh
Q 020875 7 RVLVTGAAGQIGYALVPMIAR----GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTDAVE 77 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~----~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-----~~~~v~~~~~~~~ 77 (320)
.++||||++.+|.+++..|+. .|. .|++.++++ +.++....++...... ...++....+..+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~ 72 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-------VLVLSARND--EALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQ 72 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-------EEEEEEcCH--HHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHH
Confidence 478999999999999999986 454 788998864 4444444444321100 0112221111212
Q ss_pred hc---C--------CCcEEEEeCCCCCCC----C--CC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCc
Q 020875 78 AC---T--------GVNIAVMVGGFPRKE----G--ME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 78 al---~--------~aDvVi~~ag~~~~~----~--~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP 133 (320)
.+ . +-|++|+.||..... . .+ ..+.+..|+.....+ .+.+++.....+.++++|+.
T Consensus 73 ~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~ 152 (256)
T TIGR01500 73 LLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSL 152 (256)
T ss_pred HHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCH
Confidence 11 1 126899999863211 1 11 234566776655444 44444321123567777753
Q ss_pred chhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
... ...|..-.|+.++.-...+.+.++..+. +..|+..
T Consensus 153 ~~~---------~~~~~~~~Y~asKaal~~l~~~la~e~~--~~~i~v~ 190 (256)
T TIGR01500 153 CAI---------QPFKGWALYCAGKAARDMLFQVLALEEK--NPNVRVL 190 (256)
T ss_pred HhC---------CCCCCchHHHHHHHHHHHHHHHHHHHhc--CCCeEEE
Confidence 211 1222222356666656666677777765 4566643
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.011 Score=52.47 Aligned_cols=154 Identities=14% Similarity=0.166 Sum_probs=86.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC----CCcceEEeCCh------
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTDA------ 75 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~~~~~------ 75 (320)
|.++||||++.+|.+++..|.+ |. .|++.++++ ++++....++...... ...++....+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~-------~Vil~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 70 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE-------DVVLAARRP--EAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQ 70 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC-------EEEEEeCCH--HHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHH
Confidence 4689999999999999999984 64 788998864 4455444455432110 01122221111
Q ss_pred -hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 76 -VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 76 -~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
.+.+...|++|+.+|...... .+ ..+....|... .+.+.+.+.+.. .++.+|++|+-...
T Consensus 71 ~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~~g~Iv~isS~~~~-------- 141 (246)
T PRK05599 71 TQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQT-APAAIVAFSSIAGW-------- 141 (246)
T ss_pred HHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-CCCEEEEEeccccc--------
Confidence 222346899999998743211 11 11233344333 334455565432 24677877764321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.-...+-..+++.++ +..|+.
T Consensus 142 -~~~~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v 175 (246)
T PRK05599 142 -RARRANYVYGSTKAGLDAFCQGLADSLH--GSHVRL 175 (246)
T ss_pred -cCCcCCcchhhHHHHHHHHHHHHHHHhc--CCCceE
Confidence 1122222577777666677777888765 345663
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0029 Score=50.40 Aligned_cols=73 Identities=25% Similarity=0.262 Sum_probs=46.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
|||+|+|++|.+|+.++..+.+. ++ +++ .+|++++ + ..+ .|+.+........+..+.++.+.+..+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~-------~lv~~v~~~~~-~-~~g--~d~g~~~~~~~~~~~v~~~l~~~~~~~D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF-------ELVGAVDRKPS-A-KVG--KDVGELAGIGPLGVPVTDDLEELLEEAD 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE-------EEEEEEETTTS-T-TTT--SBCHHHCTSST-SSBEBS-HHHHTTH-S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc-------EEEEEEecCCc-c-ccc--chhhhhhCcCCcccccchhHHHhcccCC
Confidence 69999998899999999999884 44 654 6777531 1 111 2332222111345566678889999999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||-..
T Consensus 70 VvIDfT 75 (124)
T PF01113_consen 70 VVIDFT 75 (124)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 998763
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.005 Score=54.75 Aligned_cols=72 Identities=22% Similarity=0.197 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+.+||+|+| +|.+|.+++..|+..+... ..++.+++++. .++++. +.+.. .+....+..+.++++|
T Consensus 3 ~~~kI~iIG-~G~mg~ala~~l~~~~~~~---~~~i~~~~~~~-~~~~~~----~~~~~-----~~~~~~~~~~~~~~~D 68 (245)
T PRK07634 3 KKHRILFIG-AGRMAEAIFSGLLKTSKEY---IEEIIVSNRSN-VEKLDQ----LQARY-----NVSTTTDWKQHVTSVD 68 (245)
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCCCCC---cCeEEEECCCC-HHHHHH----HHHHc-----CcEEeCChHHHHhcCC
Confidence 357999999 6999999999998775321 11366777531 233332 22111 1233456777889999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 69 iViiav 74 (245)
T PRK07634 69 TIVLAM 74 (245)
T ss_pred EEEEec
Confidence 999984
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=61.22 Aligned_cols=77 Identities=18% Similarity=0.402 Sum_probs=49.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|+.+.+||+|+||+|++|..++..|.....+. ..++.++...+ -.|+...+.. .++.+..-..+.++
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~---v~~l~~~aS~~----saGk~~~~~~------~~l~v~~~~~~~~~ 67 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFN---IAEVTLLSSKR----SAGKTVQFKG------REIIIQEAKINSFE 67 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCC---cccEEEEECcc----cCCCCeeeCC------cceEEEeCCHHHhc
Confidence 78888999999999999999999988544431 12477776532 1233222211 12333322235678
Q ss_pred CCcEEEEeCC
Q 020875 81 GVNIAVMVGG 90 (320)
Q Consensus 81 ~aDvVi~~ag 90 (320)
++|+||++++
T Consensus 68 ~~Divf~a~~ 77 (347)
T PRK06728 68 GVDIAFFSAG 77 (347)
T ss_pred CCCEEEECCC
Confidence 9999999874
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0061 Score=54.73 Aligned_cols=157 Identities=16% Similarity=0.204 Sum_probs=83.7
Q ss_pred CEEEEEcC--CChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-ccchhHHHHHHHhcccCCCCcceEEeCChh------
Q 020875 6 VRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVDAAFPLLKGVVATTDAV------ 76 (320)
Q Consensus 6 ~kI~IiGA--~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~------ 76 (320)
++++|||| ++-+|.+++..|++.|. .|++.++.. +.+.++....++.. ......++....+..
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~-------~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~~~~ 78 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGA-------ELAFTYVGDRFKDRITEFAAEFGS-DLVFPCDVASDEQIDALFASL 78 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCC-------eEEEEccchHHHHHHHHHHHhcCC-cceeeccCCCHHHHHHHHHHH
Confidence 57999996 56899999999999886 788776431 11222221111111 001112222222222
Q ss_pred -hhcCCCcEEEEeCCCCCCC--------CCCHH---HHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 77 -EACTGVNIAVMVGGFPRKE--------GMERK---DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 77 -~al~~aDvVi~~ag~~~~~--------~~~r~---~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+.+...|++|+.||..... ..+.+ ..+..|+.....+.+.+..+-..++.+|++|+-...
T Consensus 79 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~-------- 150 (260)
T PRK06997 79 GQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE-------- 150 (260)
T ss_pred HHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccc--------
Confidence 2235689999999874321 12222 345667665555554444432123567777643211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.--..+-+.+|..+. +..|+.
T Consensus 151 -~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrV 184 (260)
T PRK06997 151 -RVVPNYNTMGLAKASLEASVRYLAVSLG--PKGIRA 184 (260)
T ss_pred -cCCCCcchHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1122222466676666677777887765 445663
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0032 Score=52.07 Aligned_cols=121 Identities=20% Similarity=0.190 Sum_probs=73.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeC-------Chh
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATT-------DAV 76 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~-------~~~ 76 (320)
.++|+||++.+|..++..|+++|- ..|++++++++.+.+......+...... ...++.... ...
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~------~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGA------RVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTT------EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCc------eEEEEeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 588999999999999999998854 2788888862223333333334322110 001111101 112
Q ss_pred hhcCCCcEEEEeCCCCCCCCC------CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 77 EACTGVNIAVMVGGFPRKEGM------ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~~~------~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
+.....|++|+.+|....... .-.+.+..|+.....+.+.+.. . +...+|++|+...
T Consensus 76 ~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~-~~g~iv~~sS~~~ 138 (167)
T PF00106_consen 76 KRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-Q-GGGKIVNISSIAG 138 (167)
T ss_dssp HHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-H-TTEEEEEEEEGGG
T ss_pred cccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-c-cccceEEecchhh
Confidence 234578999999998652211 1234677887777777777777 3 4677888886553
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0058 Score=56.47 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=67.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHH----HhcccCCCCcceEEeCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME----LVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~d----l~~~~~~~~~~v~~~~~~~~al~ 80 (320)
.|||+|+| +|.||+.++..|.+.|. +|.++++.. +.++....+ +.+.... ..+.......+...
T Consensus 2 ~m~I~IiG-aGaiG~~~a~~L~~~G~-------~V~lv~r~~--~~~~~i~~~~Gl~i~~~g~~--~~~~~~~~~~~~~~ 69 (305)
T PRK05708 2 SMTWHILG-AGSLGSLWACRLARAGL-------PVRLILRDR--QRLAAYQQAGGLTLVEQGQA--SLYAIPAETADAAE 69 (305)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhCCC-------CeEEEEech--HHHHHHhhcCCeEEeeCCcc--eeeccCCCCccccc
Confidence 47999999 59999999999999886 799999853 222211110 1100000 01111111123346
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~ 156 (320)
..|+||++.-.. ...+.++.++.+..++..++.+-|=++....+. +. ++.+++.++
T Consensus 70 ~~D~viv~vK~~----------------~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~-~~---~~~~~v~~g 125 (305)
T PRK05708 70 PIHRLLLACKAY----------------DAEPAVASLAHRLAPGAELLLLQNGLGSQDAVA-AR---VPHARCIFA 125 (305)
T ss_pred ccCEEEEECCHH----------------hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH-Hh---CCCCcEEEE
Confidence 789999985211 123344455554446677888888776554442 22 455565443
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.005 Score=55.97 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=47.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
+||++|| +|.+|++++..|++.++.. ..+|..+|+++ ++++ .+.+.. .+....+..+.+++||+|
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~---~~~I~v~~r~~--~~~~----~l~~~~-----g~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVS---PDQIICSDLNV--SNLK----NASDKY-----GITITTNNNEVANSADIL 67 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCC---CceEEEECCCH--HHHH----HHHHhc-----CcEEeCCcHHHHhhCCEE
Confidence 4899999 7999999999999887532 13688999863 3332 122110 123344566778899999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 68 iLav 71 (272)
T PRK12491 68 ILSI 71 (272)
T ss_pred EEEe
Confidence 9985
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0036 Score=58.55 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=89.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHH---HHHH-hcccC-------CCCcceE----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV---KMEL-VDAAF-------PLLKGVV---- 70 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~---~~dl-~~~~~-------~~~~~v~---- 70 (320)
++|.+|||+||+|..++.+|+.+-.. .|++.-+-.+.+.+... ..+. .+-+. +..+++.
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~------kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~l 74 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDA------KVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDL 74 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCC------cEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccC
Confidence 47899999999999999999876543 45444333332222111 1110 00000 1111211
Q ss_pred -EeCChhhhcC-CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC-CC
Q 020875 71 -ATTDAVEACT-GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA-PS 147 (320)
Q Consensus 71 -~~~~~~~al~-~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~-~~ 147 (320)
........|. .+|.|||.|.... .-.+-.++...|+.++.++++.....- ++. +..+| ++.+.++...... ..
T Consensus 75 GL~~~~~~~La~~vD~I~H~gA~Vn-~v~pYs~L~~~NVlGT~evlrLa~~gk-~Kp-~~yVS-sisv~~~~~~~~~~~~ 150 (382)
T COG3320 75 GLSERTWQELAENVDLIIHNAALVN-HVFPYSELRGANVLGTAEVLRLAATGK-PKP-LHYVS-SISVGETEYYSNFTVD 150 (382)
T ss_pred CCCHHHHHHHhhhcceEEecchhhc-ccCcHHHhcCcchHhHHHHHHHHhcCC-Cce-eEEEe-eeeeccccccCCCccc
Confidence 1111233444 5999999876431 112345677899999999999887652 322 33333 3333222111000 00
Q ss_pred CC-------CCc-E---EEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEc
Q 020875 148 IP-------AKN-I---TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG 186 (320)
Q Consensus 148 ~~-------~~~-i---~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G 186 (320)
+. ..+ . |+-++--.+++.+...+. |.+..-+|.-+|.|
T Consensus 151 ~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~g 199 (382)
T COG3320 151 FDEISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITG 199 (382)
T ss_pred cccccccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeec
Confidence 11 111 1 233556666777766666 98888888776655
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0059 Score=54.55 Aligned_cols=156 Identities=10% Similarity=0.089 Sum_probs=81.4
Q ss_pred CCEEEEEcCCC--hhHHHHHHHHHhcCcCCCCCCeEEEEEecCC---------ccchhHHHHHHHhcccCC---CCcceE
Q 020875 5 PVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPP---------AAEALNGVKMELVDAAFP---LLKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~---------~~~~~~~~~~dl~~~~~~---~~~~v~ 70 (320)
.++|+||||+| .+|.+++..|++.|. .|++.++.. +.+.......++...... ...++.
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~G~-------~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~ 78 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEAGA-------DIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLT 78 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHCCC-------eEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 46899999874 799999999999886 677765321 001111112223221110 011221
Q ss_pred EeCChh-------hhcCCCcEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCc
Q 020875 71 ATTDAV-------EACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 71 ~~~~~~-------~al~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP 133 (320)
...+.. +.+.+.|++|+.||..... ..+. .+.+..|+.....+ .+.+++. ..+++|++|+.
T Consensus 79 ~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS~ 156 (256)
T PRK12859 79 QNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKK--SGGRIINMTSG 156 (256)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCeEEEEEccc
Confidence 111111 2234579999999874321 1222 23456676644444 4444433 24677777764
Q ss_pred chhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
... .+.+....|+.++.-...+-+.+++.+. +..|+
T Consensus 157 ~~~---------~~~~~~~~Y~~sK~a~~~l~~~la~~~~--~~~i~ 192 (256)
T PRK12859 157 QFQ---------GPMVGELAYAATKGAIDALTSSLAAEVA--HLGIT 192 (256)
T ss_pred ccC---------CCCCCchHHHHHHHHHHHHHHHHHHHhh--hhCeE
Confidence 321 1223222456665555566667777765 34455
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0069 Score=55.91 Aligned_cols=161 Identities=12% Similarity=0.059 Sum_probs=86.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc--------cchhHHHHHHHhcccCC---CCcceEEeC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA--------AEALNGVKMELVDAAFP---LLKGVVATT 73 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~--------~~~~~~~~~dl~~~~~~---~~~~v~~~~ 73 (320)
.+.++||||++.+|.+++..|+..|. .|++.+++.. .+++......+...... ...++....
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G~-------~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~ 80 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAGA-------TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPE 80 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 36899999999999999999999886 7889888631 12222222223221100 111222211
Q ss_pred Chh-------hhcCCCcEEEEeC-CCCC-----CC--CCCH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEc
Q 020875 74 DAV-------EACTGVNIAVMVG-GFPR-----KE--GMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 74 ~~~-------~al~~aDvVi~~a-g~~~-----~~--~~~r---~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~s 131 (320)
+.. +.+...|++|+.| |... .+ ..+. .+.+..|+.. ++.+++.+.+. ..+++|++|
T Consensus 81 ~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~--~~g~IV~is 158 (305)
T PRK08303 81 QVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRR--PGGLVVEIT 158 (305)
T ss_pred HHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhC--CCcEEEEEC
Confidence 211 2234689999998 7421 11 1111 2234455543 44445555443 236778877
Q ss_pred CcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 132 nP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+..... . ....+..-.|+.++.....|-+.+|..++ +..|+..
T Consensus 159 S~~~~~-----~-~~~~~~~~~Y~asKaal~~lt~~La~el~--~~gIrVn 201 (305)
T PRK08303 159 DGTAEY-----N-ATHYRLSVFYDLAKTSVNRLAFSLAHELA--PHGATAV 201 (305)
T ss_pred Cccccc-----c-CcCCCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEE
Confidence 532110 0 01111112467777777777777888765 4567643
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0015 Score=52.89 Aligned_cols=77 Identities=21% Similarity=0.176 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+..|++|+| +|.+|..+++.|...|.- +|.+++|+. ++++..+..+... ...+....++.+.+.++|
T Consensus 11 ~~~~vlviG-aGg~ar~v~~~L~~~g~~------~i~i~nRt~--~ra~~l~~~~~~~----~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 11 KGKRVLVIG-AGGAARAVAAALAALGAK------EITIVNRTP--ERAEALAEEFGGV----NIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp TTSEEEEES-SSHHHHHHHHHHHHTTSS------EEEEEESSH--HHHHHHHHHHTGC----SEEEEEGGGHCHHHHTES
T ss_pred CCCEEEEEC-CHHHHHHHHHHHHHcCCC------EEEEEECCH--HHHHHHHHHcCcc----ccceeeHHHHHHHHhhCC
Confidence 457999999 599999999999998862 799999863 5555444444111 112223345667788999
Q ss_pred EEEEeCCCCC
Q 020875 84 IAVMVGGFPR 93 (320)
Q Consensus 84 vVi~~ag~~~ 93 (320)
+||.+.+.+.
T Consensus 78 ivI~aT~~~~ 87 (135)
T PF01488_consen 78 IVINATPSGM 87 (135)
T ss_dssp EEEE-SSTTS
T ss_pred eEEEecCCCC
Confidence 9999876554
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0018 Score=53.44 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=66.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccch-hHHHHHHHhcccCC---CCcceEEeCChhhh----
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA-LNGVKMELVDAAFP---LLKGVVATTDAVEA---- 78 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~-~~~~~~dl~~~~~~---~~~~v~~~~~~~~a---- 78 (320)
++.|+||+|++|.+++..|.++|.. .+.+.++++.... ......++...... ...++....+..+.
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~------~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGAR------HLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAI 75 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCC------eEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 7899999999999999999987752 4666666532111 11111222211100 01111111111222
Q ss_pred ---cCCCcEEEEeCCCCCCC---CC---CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 79 ---CTGVNIAVMVGGFPRKE---GM---ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 79 ---l~~aDvVi~~ag~~~~~---~~---~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+...|.||+.+|..... .. .....+..|+.....+.+.+.+.. + .+++++|+
T Consensus 76 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~ii~~ss 136 (180)
T smart00822 76 PARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLP-L-DFFVLFSS 136 (180)
T ss_pred HHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCC-c-ceEEEEcc
Confidence 23469999999864311 11 123457788888898888886653 3 45666664
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0026 Score=58.57 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=44.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| .|.+|++++..|...|+ +|.++|+++ ++++. +.+..... .....+..+.++++|+|
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~-------~V~~~dr~~--~~~~~----l~~~g~~~---~~s~~~~~~~~~~~dvI 63 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH-------DCVGYDHDQ--DAVKA----MKEDRTTG---VANLRELSQRLSAPRVV 63 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHH----HHHcCCcc---cCCHHHHHhhcCCCCEE
Confidence 5899999 79999999999999887 899999874 33322 22111000 00011234456789999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 64 i~~v 67 (298)
T TIGR00872 64 WVMV 67 (298)
T ss_pred EEEc
Confidence 9984
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.001 Score=57.19 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCc--ceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLK--GVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~--~v~~~~~~~~al~~ 81 (320)
+.++++|+||+|.+|..++..|...+. +|.+++++. ++++....++.+....... +.....+..+++++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-------~V~l~~R~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-------RVVLVGRDL--ERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 457999999899999999999998775 789998763 4444433333211100000 01111233577899
Q ss_pred CcEEEEeCC
Q 020875 82 VNIAVMVGG 90 (320)
Q Consensus 82 aDvVi~~ag 90 (320)
+|+||.+..
T Consensus 98 ~diVi~at~ 106 (194)
T cd01078 98 ADVVFAAGA 106 (194)
T ss_pred CCEEEECCC
Confidence 999888754
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0053 Score=60.03 Aligned_cols=101 Identities=11% Similarity=-0.003 Sum_probs=61.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC---C
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---G 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~---~ 81 (320)
+.+|+|+| .|.+|++++..|+.+|+ +|.++|+++ ++.+.......+. ...+....++.++++ +
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~----g~~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRGF-------KISVYNRTY--EKTEEFVKKAKEG----NTRVKGYHTLEELVNSLKK 66 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHhhhhc----CCcceecCCHHHHHhcCCC
Confidence 35899999 79999999999999997 899999974 3333221111110 112334456666554 5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
+|+||++.-. + +.+.++++.+..+-.++.++|-.||..
T Consensus 67 ~d~Iil~v~~----~-----------~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 67 PRKVILLIKA----G-----------EAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CCEEEEEeCC----h-----------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 8988887421 1 223344444444433556677777743
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0057 Score=56.10 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=47.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
+|||+|+| .|.+|+.++..|...|+ +|.++|+++ ++.+. +... ......+..++++++|+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~-------~v~~~d~~~--~~~~~----~~~~------g~~~~~~~~e~~~~~d~ 61 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGY-------SLVVYDRNP--EAVAE----VIAA------GAETASTAKAVAEQCDV 61 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHHH----HHHC------CCeecCCHHHHHhcCCE
Confidence 36899999 79999999999998886 789999864 22221 1111 12233466778899999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 62 vi~~v 66 (296)
T PRK11559 62 IITML 66 (296)
T ss_pred EEEeC
Confidence 99985
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0027 Score=59.46 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=46.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|+ +|+||+|+||+|++|.-++..|.++++- ..++.++...+. .|+.+.+.. .++........+++
T Consensus 1 m~-~~~~IaIvGATG~vG~eLlrlL~~~~hP----~~~l~~v~s~~~----aG~~l~~~~------~~l~~~~~~~~~~~ 65 (336)
T PRK05671 1 MS-QPLDIAVVGATGTVGEALVQILEERDFP----VGTLHLLASSES----AGHSVPFAG------KNLRVREVDSFDFS 65 (336)
T ss_pred CC-CCCEEEEEccCCHHHHHHHHHHhhCCCC----ceEEEEEECccc----CCCeeccCC------cceEEeeCChHHhc
Confidence 55 5589999999999999999999976552 236666654321 222222211 12222211123478
Q ss_pred CCcEEEEeCC
Q 020875 81 GVNIAVMVGG 90 (320)
Q Consensus 81 ~aDvVi~~ag 90 (320)
++|+||++.+
T Consensus 66 ~vD~vFla~p 75 (336)
T PRK05671 66 QVQLAFFAAG 75 (336)
T ss_pred CCCEEEEcCC
Confidence 9999999764
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.012 Score=52.79 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=82.9
Q ss_pred CCCC-CCEEEEEcC--CChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-c--CCCCcceEEeCC
Q 020875 1 MAKE-PVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-A--FPLLKGVVATTD 74 (320)
Q Consensus 1 m~~~-~~kI~IiGA--~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~--~~~~~~v~~~~~ 74 (320)
|+.- .+.++|||| ++.||.+++..|++.|. .|++.++++ +......++... . ..+..++....+
T Consensus 1 ~~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-------~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 70 (261)
T PRK08690 1 MGFLQGKKILITGMISERSIAYGIAKACREQGA-------ELAFTYVVD---KLEERVRKMAAELDSELVFRCDVASDDE 70 (261)
T ss_pred CCccCCcEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEcCcH---HHHHHHHHHHhccCCceEEECCCCCHHH
Confidence 4442 358999996 56899999999999886 788776542 111112222211 0 011122222222
Q ss_pred hh-------hhcCCCcEEEEeCCCCCC-----C---CCCHHH---HHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCcch
Q 020875 75 AV-------EACTGVNIAVMVGGFPRK-----E---GMERKD---VMSKNVSIYKAQASALEQHA-APNCKVLVVANPAN 135 (320)
Q Consensus 75 ~~-------~al~~aDvVi~~ag~~~~-----~---~~~r~~---~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP~~ 135 (320)
.. +.+...|++|+.||.... + ..+..+ .+..|+.....+.+.+...- ...+.+|++|+...
T Consensus 71 v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~ 150 (261)
T PRK08690 71 INQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGA 150 (261)
T ss_pred HHHHHHHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccc
Confidence 21 223468999999987532 1 112222 24456554433333322210 01256677765432
Q ss_pred hhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 136 TNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 136 ~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
. .+.|..-.|+.++---..+-+.+|..+. +..|+..
T Consensus 151 ~---------~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gIrVn 186 (261)
T PRK08690 151 V---------RAIPNYNVMGMAKASLEAGIRFTAACLG--KEGIRCN 186 (261)
T ss_pred c---------cCCCCcccchhHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence 1 1222222567777666667777777654 4566643
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0026 Score=55.31 Aligned_cols=237 Identities=19% Similarity=0.259 Sum_probs=124.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc--CCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC--TGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al--~~a 82 (320)
++||.|+|++|-||+++..-+.+++.-+ ...++....+ +||.+.+ +.++-+ ..-
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~----e~wvf~~skd---------~DLt~~a-----------~t~~lF~~ekP 56 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDD----ENWVFIGSKD---------ADLTNLA-----------DTRALFESEKP 56 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCC----cceEEecccc---------ccccchH-----------HHHHHHhccCC
Confidence 4699999999999999999999887622 1455555321 3444332 222222 234
Q ss_pred cEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC----------cchhhHHHHHHHCCCCC
Q 020875 83 NIAVMVGGFPR---KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN----------PANTNALILKEFAPSIP 149 (320)
Q Consensus 83 DvVi~~ag~~~---~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn----------P~~~~~~~~~~~~~~~~ 149 (320)
-.|||+|.... ....-..|++..|+.+-.+++..+-+++-. +++...+ |+|-. +-...+ ..
T Consensus 57 thVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~--K~vsclStCIfPdkt~yPIdEt---mvh~gp-ph 130 (315)
T KOG1431|consen 57 THVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVK--KVVSCLSTCIFPDKTSYPIDET---MVHNGP-PH 130 (315)
T ss_pred ceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchh--hhhhhcceeecCCCCCCCCCHH---HhccCC-CC
Confidence 46777664321 011235688999999888888887776511 2332222 33211 111011 11
Q ss_pred CCcE-EEeeh--hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccc-----------c------CCCCCcc
Q 020875 150 AKNI-TCLTR--LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV-----------N------TAAGEKP 209 (320)
Q Consensus 150 ~~~i-~~~t~--ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v-----------~------~~~~~~~ 209 (320)
+.++ +..+. .|. ..+.+..+.|-+..++--.+|+|.|. +.-|--|++-. + .-..|.|
T Consensus 131 psN~gYsyAKr~idv--~n~aY~~qhg~~~tsviPtNvfGphD-Nfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~P 207 (315)
T KOG1431|consen 131 PSNFGYSYAKRMIDV--QNQAYRQQHGRDYTSVIPTNVFGPHD-NFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSP 207 (315)
T ss_pred CCchHHHHHHHHHHH--HHHHHHHHhCCceeeeccccccCCCC-CCCcccccchHHHHHHHHHHHhcCCceEEEecCCCh
Confidence 2233 23332 222 23567778888888887778899884 44454444433 0 1123789
Q ss_pred hhhhcccchhhhhHHHHHHhh-hhHH-HHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCcc
Q 020875 210 VRELVKDDAWLNGEFITTVQQ-RGAA-IIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY 278 (320)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~v~~-~~~~-i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~y 278 (320)
+++++...++ -+-+.-.+++ .+.| |+-..|-+.-.+ -.-+++.+..++-. .+++.--.+.++|+|
T Consensus 208 lRqFiys~DL-A~l~i~vlr~Y~~vEpiils~ge~~EVt-I~e~aeaV~ea~~F--~G~l~~DttK~DGq~ 274 (315)
T KOG1431|consen 208 LRQFIYSDDL-ADLFIWVLREYEGVEPIILSVGESDEVT-IREAAEAVVEAVDF--TGKLVWDTTKSDGQF 274 (315)
T ss_pred HHHHhhHhHH-HHHHHHHHHhhcCccceEeccCccceeE-HHHHHHHHHHHhCC--CceEEeeccCCCCCc
Confidence 9988865432 1122222222 1222 222223211111 13344555555542 466665667788876
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0025 Score=58.35 Aligned_cols=63 Identities=22% Similarity=0.314 Sum_probs=46.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEEE
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAV 86 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvVi 86 (320)
||+|+| .|.+|+.++..|+..|+ +|.++|+++ ++++. +.... ....++..++++++|+||
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~g------~~~~~~~~~~~~~aDivi 60 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY-------QLHVTTIGP--EVADE----LLAAG------AVTAETARQVTEQADVIF 60 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHHH----HHHCC------CcccCCHHHHHhcCCEEE
Confidence 699999 69999999999999887 899999864 33221 22111 112235678899999999
Q ss_pred EeC
Q 020875 87 MVG 89 (320)
Q Consensus 87 ~~a 89 (320)
++.
T Consensus 61 ~~v 63 (291)
T TIGR01505 61 TMV 63 (291)
T ss_pred Eec
Confidence 985
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0055 Score=51.57 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCCh-----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA----- 75 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~----- 75 (320)
+.+.+.|+||+|.+|..++..|.+.|. +|.+.|++. +.+.....++...... ...++....+.
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-------~V~l~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~ 85 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-------KVIVTDIDQ--ESGQATVEEITNLGGEALFVSYDMEKQGDWQRVIS 85 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 456899999999999999999999886 899999763 2333222333211100 11122111111
Q ss_pred --hhhcCCCcEEEEeCCCCC
Q 020875 76 --VEACTGVNIAVMVGGFPR 93 (320)
Q Consensus 76 --~~al~~aDvVi~~ag~~~ 93 (320)
.+.+...|++|+.||...
T Consensus 86 ~~~~~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 86 ITLNAFSRIDMLFQNAGLYK 105 (169)
T ss_pred HHHHHcCCCCEEEECCCcCC
Confidence 123456899999998754
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0088 Score=54.46 Aligned_cols=69 Identities=16% Similarity=0.346 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchh-HHHHHHHhcccCCCCcceEEeCC-hhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL-NGVKMELVDAAFPLLKGVVATTD-AVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~-~~~~~dl~~~~~~~~~~v~~~~~-~~~al~~ 81 (320)
.+++|+|+| .|.+|..++..|...|+ .+.+++++.+...+ .+..+++.|.. ..+ ..++.++
T Consensus 2 ~~~~v~IvG-~GliG~s~a~~l~~~g~-------~v~i~g~d~~~~~~~~a~~lgv~d~~---------~~~~~~~~~~~ 64 (279)
T COG0287 2 ASMKVGIVG-LGLMGGSLARALKEAGL-------VVRIIGRDRSAATLKAALELGVIDEL---------TVAGLAEAAAE 64 (279)
T ss_pred CCcEEEEEC-CchHHHHHHHHHHHcCC-------eEEEEeecCcHHHHHHHhhcCccccc---------ccchhhhhccc
Confidence 357999999 79999999999999998 45566665432222 22223333321 112 2677889
Q ss_pred CcEEEEeC
Q 020875 82 VNIAVMVG 89 (320)
Q Consensus 82 aDvVi~~a 89 (320)
+|+||++.
T Consensus 65 aD~Vivav 72 (279)
T COG0287 65 ADLVIVAV 72 (279)
T ss_pred CCEEEEec
Confidence 99999985
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.003 Score=60.05 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=43.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.+||+|+||.|.+|..++..|...|+ +|.++|++. . .+..+++++||+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~-------~V~~~d~~~-----------~--------------~~~~~~~~~aDl 145 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY-------QVRILEQDD-----------W--------------DRAEDILADAGM 145 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC-------eEEEeCCCc-----------c--------------hhHHHHHhcCCE
Confidence 47999999889999999999999887 899999741 0 023466789999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 146 Vilav 150 (374)
T PRK11199 146 VIVSV 150 (374)
T ss_pred EEEeC
Confidence 99985
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0032 Score=57.61 Aligned_cols=74 Identities=23% Similarity=0.213 Sum_probs=52.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
..||+|+| +|.+|+++++.|...|.. +|.++|++. ++++..+.++.+.. +. ..+....+..+.++++|+
T Consensus 127 ~k~vlIlG-aGGaaraia~aL~~~G~~------~I~I~nR~~--~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 127 LERVVQLG-AGGAGAAVAHALLTLGVE------RLTIFDVDP--ARAAALADELNARF-PA-ARATAGSDLAAALAAADG 195 (284)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHcCCC------EEEEECCCH--HHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCCE
Confidence 46899999 599999999999988862 799999974 56666666664432 11 122222344567899999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||.+.
T Consensus 196 VInaT 200 (284)
T PRK12549 196 LVHAT 200 (284)
T ss_pred EEECC
Confidence 99984
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0048 Score=56.98 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=45.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-CC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-TG 81 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al-~~ 81 (320)
.+++||+|+| .|.+|..++..|.+.|. +|..+|++. . ...+.++ . +....+..+.+ .+
T Consensus 34 ~~~~kI~IIG-~G~mG~slA~~L~~~G~-------~V~~~d~~~--~--~~~a~~~---g------v~~~~~~~e~~~~~ 92 (304)
T PLN02256 34 SRKLKIGIVG-FGNFGQFLAKTFVKQGH-------TVLATSRSD--Y--SDIAAEL---G------VSFFRDPDDFCEEH 92 (304)
T ss_pred CCCCEEEEEe-eCHHHHHHHHHHHhCCC-------EEEEEECcc--H--HHHHHHc---C------CeeeCCHHHHhhCC
Confidence 3568999999 69999999999988775 788999863 1 1112111 1 11233555555 47
Q ss_pred CcEEEEeC
Q 020875 82 VNIAVMVG 89 (320)
Q Consensus 82 aDvVi~~a 89 (320)
+|+||++.
T Consensus 93 aDvVilav 100 (304)
T PLN02256 93 PDVVLLCT 100 (304)
T ss_pred CCEEEEec
Confidence 99999985
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0024 Score=58.05 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=48.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
+||++|| .|.+|+.++.+|+..|+ ++.++|+++ ++.. ..+.... .....+..++.+++|+|
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~-------~v~v~~r~~--~ka~---~~~~~~G------a~~a~s~~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH-------EVTVYNRTP--EKAA---ELLAAAG------ATVAASPAEAAAEADVV 61 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC-------EEEEEeCCh--hhhh---HHHHHcC------CcccCCHHHHHHhCCEE
Confidence 5899999 89999999999999998 899999974 3321 1222211 12223567899999999
Q ss_pred EEeCC
Q 020875 86 VMVGG 90 (320)
Q Consensus 86 i~~ag 90 (320)
|.+..
T Consensus 62 itmv~ 66 (286)
T COG2084 62 ITMLP 66 (286)
T ss_pred EEecC
Confidence 99853
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0049 Score=53.58 Aligned_cols=93 Identities=17% Similarity=0.240 Sum_probs=60.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.||..++..+..... + ..-+.++|++. +++.. +.... ... ..+++.+.+.+.|++
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~-~---~e~v~v~D~~~--ek~~~----~~~~~---~~~--~~s~ide~~~~~Dlv 64 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRV-D---FELVAVYDRDE--EKAKE----LEASV---GRR--CVSDIDELIAEVDLV 64 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCc-c---eeEEEEecCCH--HHHHH----HHhhc---CCC--ccccHHHHhhcccee
Confidence 6899999 79999998877665421 1 12567899874 33332 22111 011 114667777999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
+-+|+ .+.+++++..+-+.+ .+++++.++
T Consensus 65 VEaAS----------------~~Av~e~~~~~L~~g-~d~iV~SVG 93 (255)
T COG1712 65 VEAAS----------------PEAVREYVPKILKAG-IDVIVMSVG 93 (255)
T ss_pred eeeCC----------------HHHHHHHhHHHHhcC-CCEEEEech
Confidence 99886 256788888888886 676655554
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0056 Score=52.19 Aligned_cols=141 Identities=15% Similarity=0.125 Sum_probs=85.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCC-------hh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTD-------AV 76 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~-------~~ 76 (320)
....|+||+.-||.+++..|...|. ++...|.+. +.+++.+.+|.-... .+..++....+ ..
T Consensus 15 k~~~vtGg~sGIGrAia~~la~~Ga-------rv~v~dl~~--~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~ 85 (256)
T KOG1200|consen 15 KVAAVTGGSSGIGRAIAQLLAKKGA-------RVAVADLDS--AAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEME 85 (256)
T ss_pred ceeEEecCCchHHHHHHHHHHhcCc-------EEEEeecch--hhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHH
Confidence 4667889999999999999999997 888899864 345555666643211 11122222111 12
Q ss_pred hhcCCCcEEEEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHHHhhh----cCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 77 EACTGVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQH----AAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~i~~~----~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+.+--.++++.+||+.+..- +++++.+..|+...--..++..+. ......+|++|+=++.+-..-+ +
T Consensus 86 k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQ---t 162 (256)
T KOG1200|consen 86 KSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQ---T 162 (256)
T ss_pred HhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccc---h
Confidence 22345799999999987432 245667788877665554444333 2123478999977765433322 1
Q ss_pred CCCCCc--EEEeeh
Q 020875 147 SIPAKN--ITCLTR 158 (320)
Q Consensus 147 ~~~~~~--i~~~t~ 158 (320)
+|...| ++|.|.
T Consensus 163 nYAAsK~GvIgftk 176 (256)
T KOG1200|consen 163 NYAASKGGVIGFTK 176 (256)
T ss_pred hhhhhcCceeeeeH
Confidence 233333 667665
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0053 Score=57.37 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=45.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.+|+.++..|...|+ +|..+|++.. .. .+. .....++.+++++||+
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~G~-------~V~~~d~~~~--~~----~~~----------~~~~~~l~ell~~aDi 201 (330)
T PRK12480 146 NMTVAIIG-TGRIGAATAKIYAGFGA-------TITAYDAYPN--KD----LDF----------LTYKDSVKEAIKDADI 201 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEeCChh--Hh----hhh----------hhccCCHHHHHhcCCE
Confidence 46999999 69999999999988776 8999998641 11 011 0112367889999999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
|+++.
T Consensus 202 Vil~l 206 (330)
T PRK12480 202 ISLHV 206 (330)
T ss_pred EEEeC
Confidence 99876
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0034 Score=58.82 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=44.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
++||+|+||+|++|..++..|.++++- ..++..+-..++ .+....+.. .++........+++++|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp----~~~l~~l~s~~~----~g~~l~~~g------~~i~v~d~~~~~~~~vDv 66 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFP----VDKLRLLASARS----AGKELSFKG------KELKVEDLTTFDFSGVDI 66 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC----cceEEEEEcccc----CCCeeeeCC------ceeEEeeCCHHHHcCCCE
Confidence 479999999999999999999887652 136666654321 122222211 122222112245689999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
||++.|
T Consensus 67 Vf~A~g 72 (334)
T PRK14874 67 ALFSAG 72 (334)
T ss_pred EEECCC
Confidence 999875
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00091 Score=59.97 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=51.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|+|+|+||+|++|++++..|+..++ +|+..-++. +++.. +.........++.....+..+++|.|.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~-------~v~~~~r~~--~~~~~----~~~~v~~~~~d~~~~~~l~~a~~G~~~~ 67 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH-------EVRAAVRNP--EAAAA----LAGGVEVVLGDLRDPKSLVAGAKGVDGV 67 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC-------EEEEEEeCH--HHHHh----hcCCcEEEEeccCCHhHHHHHhccccEE
Confidence 6899999999999999999999876 777777653 22221 1100001123444555788899999999
Q ss_pred EEeCCCC
Q 020875 86 VMVGGFP 92 (320)
Q Consensus 86 i~~ag~~ 92 (320)
+++.+..
T Consensus 68 ~~i~~~~ 74 (275)
T COG0702 68 LLISGLL 74 (275)
T ss_pred EEEeccc
Confidence 9987644
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.011 Score=54.47 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=44.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC---C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG---V 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~---a 82 (320)
|||+++| .|.+|++++..|...|+ +|.++|+++ ++++ .+.+. ......+..+.+++ +
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~-------~v~v~dr~~--~~~~----~~~~~------g~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH-------EVVGYDVNQ--EAVD----VAGKL------GITARHSLEELVSKLEAP 60 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC-------EEEEEECCH--HHHH----HHHHC------CCeecCCHHHHHHhCCCC
Confidence 5899999 79999999999999886 789999863 3322 12211 12233355555554 6
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+||++.
T Consensus 61 dvVi~~v 67 (299)
T PRK12490 61 RTIWVMV 67 (299)
T ss_pred CEEEEEe
Confidence 8998874
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0051 Score=58.19 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=45.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
+||+|+| .|.+|..++..|...|+ ++.++|++++.... ..... . .... ...++..+++++||+|
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~-------~v~i~~~~~~~~~~---~~a~~-~--~~~~--~~~~~~~~~~~~aDlV 64 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGP-------DVFIIGYDPSAAQL---ARALG-F--GVID--ELAADLQRAAAEADLI 64 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCC-------CeEEEEeCCCHHHH---HHHhc-C--CCCc--ccccCHHHHhcCCCEE
Confidence 4799999 69999999999999886 67788876432111 11110 0 0000 1234567788999999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 65 ilav 68 (359)
T PRK06545 65 VLAV 68 (359)
T ss_pred EEeC
Confidence 9985
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0087 Score=53.38 Aligned_cols=74 Identities=24% Similarity=0.270 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEE-EEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
.+|||+|.||+|.+|+.++..+.+.+.+ ++ ..+|+... . ..+ .|.......-.-.+.++.++.....++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~------~L~aa~~~~~~-~-~~g--~d~ge~~g~~~~gv~v~~~~~~~~~~~ 70 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDL------ELVAAFDRPGS-L-SLG--SDAGELAGLGLLGVPVTDDLLLVKADA 70 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCc------eEEEEEecCCc-c-ccc--cchhhhccccccCceeecchhhcccCC
Confidence 3689999999999999999998876542 43 46776532 1 111 111111111112333444455666778
Q ss_pred cEEEE
Q 020875 83 NIAVM 87 (320)
Q Consensus 83 DvVi~ 87 (320)
|++|=
T Consensus 71 DV~ID 75 (266)
T COG0289 71 DVLID 75 (266)
T ss_pred CEEEE
Confidence 87775
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0062 Score=57.20 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=46.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
.+++||+|+||+|++|..++..|.++++- ..++.++...++ .++..+... .++....-..++++++
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP----~~~l~~las~rs----aGk~~~~~~------~~~~v~~~~~~~~~~~ 70 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFP----YSSLKMLASARS----AGKKVTFEG------RDYTVEELTEDSFDGV 70 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCC----cceEEEEEccCC----CCCeeeecC------ceeEEEeCCHHHHcCC
Confidence 45689999999999999999988886652 136665543321 222222111 1222322223567899
Q ss_pred cEEEEeCC
Q 020875 83 NIAVMVGG 90 (320)
Q Consensus 83 DvVi~~ag 90 (320)
|+||++++
T Consensus 71 D~vf~a~p 78 (344)
T PLN02383 71 DIALFSAG 78 (344)
T ss_pred CEEEECCC
Confidence 99999875
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.013 Score=55.12 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--------------CCCcce
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--------------PLLKGV 69 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--------------~~~~~v 69 (320)
+.++|+|+| -|+||-++|-.++.+|. .|.-+|+++ .+.. .+..... -..+++
T Consensus 8 ~~~~I~ViG-LGYVGLPlA~~fA~~G~-------~ViG~DIn~--~~Vd----~ln~G~~~i~e~~~~~~v~~~v~~g~l 73 (436)
T COG0677 8 MSATIGVIG-LGYVGLPLAAAFASAGF-------KVIGVDINQ--KKVD----KLNRGESYIEEPDLDEVVKEAVESGKL 73 (436)
T ss_pred CceEEEEEc-cccccHHHHHHHHHcCC-------ceEeEeCCH--HHHH----HHhCCcceeecCcHHHHHHHHHhcCCc
Confidence 348999999 89999999999999997 799999974 2221 1111110 013578
Q ss_pred EEeCChhhhcCCCcEEEEeCCCCCCC
Q 020875 70 VATTDAVEACTGVNIAVMVGGFPRKE 95 (320)
Q Consensus 70 ~~~~~~~~al~~aDvVi~~ag~~~~~ 95 (320)
+.+++. +.++.||++|++.-.|-+.
T Consensus 74 raTtd~-~~l~~~dv~iI~VPTPl~~ 98 (436)
T COG0677 74 RATTDP-EELKECDVFIICVPTPLKK 98 (436)
T ss_pred eEecCh-hhcccCCEEEEEecCCcCC
Confidence 888875 5578999999998776543
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0022 Score=53.67 Aligned_cols=101 Identities=13% Similarity=0.146 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH-----HHHHHhcccCCCCcceEEeCChhh
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-----VKMELVDAAFPLLKGVVATTDAVE 77 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~-----~~~dl~~~~~~~~~~v~~~~~~~~ 77 (320)
+++|...|+||+|-.|+-+...+.+.+.++ .|+++-+++....+.. ...|++.. .++.+
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FS-----KV~~i~RR~~~d~at~k~v~q~~vDf~Kl-----------~~~a~ 79 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFS-----KVYAILRRELPDPATDKVVAQVEVDFSKL-----------SQLAT 79 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccce-----eEEEEEeccCCCccccceeeeEEechHHH-----------HHHHh
Confidence 346789999999999999999999999886 7777776531111111 11233222 25678
Q ss_pred hcCCCcEEEEeCCCCCC-CCCCHHHHHHhhHHHHHHHHHHHhhhc
Q 020875 78 ACTGVNIAVMVGGFPRK-EGMERKDVMSKNVSIYKAQASALEQHA 121 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~-~~~~r~~~~~~n~~~~~~i~~~i~~~~ 121 (320)
++.+.|+.|++-|..|. .|.+ .++...-+.....++..++.+
T Consensus 80 ~~qg~dV~FcaLgTTRgkaGad--gfykvDhDyvl~~A~~AKe~G 122 (238)
T KOG4039|consen 80 NEQGPDVLFCALGTTRGKAGAD--GFYKVDHDYVLQLAQAAKEKG 122 (238)
T ss_pred hhcCCceEEEeecccccccccC--ceEeechHHHHHHHHHHHhCC
Confidence 88999999998887663 2321 223334455666777776654
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.021 Score=51.81 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=90.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--CCCCcceEEe-------CCh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FPLLKGVVAT-------TDA 75 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~~~~~~v~~~-------~~~ 75 (320)
...|+||||++-+|..++.+++++|. .++++|++.. .....+..+.+.. ..+.-+++.. ...
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~-------~~vl~Din~~--~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGA-------KLVLWDINKQ--GNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCC-------eEEEEecccc--chHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHH
Confidence 36899999999999999999999986 7999999852 2232333333221 0011111111 124
Q ss_pred hhhcCCCcEEEEeCCCCC-CCC--CCHHH---HHHhhH----HHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 76 VEACTGVNIAVMVGGFPR-KEG--MERKD---VMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~-~~~--~~r~~---~~~~n~----~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.+...+.|++|.-||+.. ++- .++++ .++.|+ -.+++.++.+.+.+ ++.+|.+++-.+..
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~--~GHIV~IaS~aG~~-------- 178 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN--NGHIVTIASVAGLF-------- 178 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC--CceEEEehhhhccc--------
Confidence 455678999999999743 222 22322 344554 46788899998864 56677766543321
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcC-CCCCCeeeeEE
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLN-VQVSDVKNVII 184 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~-v~~~~v~~~~v 184 (320)
+.+.---|+.|+....-|...+...|. .++.+|+.-.|
T Consensus 179 -g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv 217 (300)
T KOG1201|consen 179 -GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLV 217 (300)
T ss_pred -CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEE
Confidence 111101244444444444444444333 35555765543
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0011 Score=58.62 Aligned_cols=74 Identities=15% Similarity=0.268 Sum_probs=46.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-cCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-CTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-l~~aDv 84 (320)
|+|+|+| +|.+|++++..|.+.|+ +|+++|.++ ++++....+-.+.. -...+-+...-+.++ +.++|+
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~-------~Vv~Id~d~--~~~~~~~~~~~~~~-~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGH-------NVVLIDRDE--ERVEEFLADELDTH-VVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCC-------ceEEEEcCH--HHHHHHhhhhcceE-EEEecCCCHHHHHhcCCCcCCE
Confidence 6899999 59999999999999998 899999874 33332111101110 000111111124444 678999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
++.+.|
T Consensus 70 vva~t~ 75 (225)
T COG0569 70 VVAATG 75 (225)
T ss_pred EEEeeC
Confidence 998764
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0016 Score=59.15 Aligned_cols=82 Identities=21% Similarity=0.253 Sum_probs=54.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---------CCcceEEeCCh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---------LLKGVVATTDA 75 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---------~~~~v~~~~~~ 75 (320)
++|||.+| +|+||.+....++..- +..+|.++|.+. .+..++.-|-.-.-.| -..++..+++.
T Consensus 1 ~~kiccig-agyvggptcavia~kc-----p~i~vtvvd~s~--~ri~~wnsd~lpiyepgldevv~~crgknlffstdi 72 (481)
T KOG2666|consen 1 MVKICCIG-AGYVGGPTCAVIALKC-----PDIEVTVVDISV--PRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDI 72 (481)
T ss_pred CceEEEec-CcccCCcchheeeecC-----CceEEEEEecCc--hHhhcccCCCCcccCCCHHHHHHHhcCCceeeecch
Confidence 46999999 5999998776554331 124899999975 3443322111100001 13577888999
Q ss_pred hhhcCCCcEEEEeCCCCCC
Q 020875 76 VEACTGVNIAVMVGGFPRK 94 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~ 94 (320)
+++++.+|+||+....|.+
T Consensus 73 ekai~eadlvfisvntptk 91 (481)
T KOG2666|consen 73 EKAIKEADLVFISVNTPTK 91 (481)
T ss_pred HHHhhhcceEEEEecCCcc
Confidence 9999999999998877653
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.016 Score=49.86 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=74.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC------
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD------ 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~------ 74 (320)
|+.....|+||||+..||..++..+.+.|. +|.+..+++ +++.......-+... ...++-...+
T Consensus 1 mk~tgnTiLITGG~sGIGl~lak~f~elgN-------~VIi~gR~e--~~L~e~~~~~p~~~t-~v~Dv~d~~~~~~lve 70 (245)
T COG3967 1 MKTTGNTILITGGASGIGLALAKRFLELGN-------TVIICGRNE--ERLAEAKAENPEIHT-EVCDVADRDSRRELVE 70 (245)
T ss_pred CcccCcEEEEeCCcchhhHHHHHHHHHhCC-------EEEEecCcH--HHHHHHHhcCcchhe-eeecccchhhHHHHHH
Confidence 777778999999999999999999999886 888888874 444432211111100 0112222111
Q ss_pred -hhhhcCCCcEEEEeCCCCCCCCCC-----H---HHHHHhh----HHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 75 -AVEACTGVNIAVMVGGFPRKEGME-----R---KDVMSKN----VSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 75 -~~~al~~aDvVi~~ag~~~~~~~~-----r---~~~~~~n----~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+.+...+-+++|..||+.+..+.+ . .+.+.-| +..+..+.+.+.+. |++-+|++|+=
T Consensus 71 wLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q--~~a~IInVSSG 140 (245)
T COG3967 71 WLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQ--PEATIINVSSG 140 (245)
T ss_pred HHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCceEEEeccc
Confidence 223345679999999987643211 1 1223334 34566667777765 57889999853
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0047 Score=50.73 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+.++|+|+| +|.+|..++..|...+. .++.++|++. ++++....++.... .... ..+..+.++++|
T Consensus 18 ~~~~i~iiG-~G~~g~~~a~~l~~~g~------~~v~v~~r~~--~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~D 83 (155)
T cd01065 18 KGKKVLILG-AGGAARAVAYALAELGA------AKIVIVNRTL--EKAKALAERFGELG----IAIA-YLDLEELLAEAD 83 (155)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCC------CEEEEEcCCH--HHHHHHHHHHhhcc----ccee-ecchhhccccCC
Confidence 457999999 59999999999988752 1799999864 33333332222110 0111 234556689999
Q ss_pred EEEEeCCCC
Q 020875 84 IAVMVGGFP 92 (320)
Q Consensus 84 vVi~~ag~~ 92 (320)
+||.+....
T Consensus 84 vvi~~~~~~ 92 (155)
T cd01065 84 LIINTTPVG 92 (155)
T ss_pred EEEeCcCCC
Confidence 999987544
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.003 Score=58.08 Aligned_cols=64 Identities=22% Similarity=0.453 Sum_probs=47.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
+||+|+| .|.+|.+++..|+..|+ +|.++|+++ ++++ ++... ......+..++++++|+|
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G~-------~V~v~d~~~--~~~~----~~~~~------g~~~~~s~~~~~~~aDvV 61 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQGH-------QLQVFDVNP--QAVD----ALVDK------GATPAASPAQAAAGAEFV 61 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHH----HHHHc------CCcccCCHHHHHhcCCEE
Confidence 4899999 79999999999999887 899999874 3332 22211 112234667788999999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 62 i~~v 65 (296)
T PRK15461 62 ITML 65 (296)
T ss_pred EEec
Confidence 9985
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0094 Score=54.16 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=42.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| .|.+|+.++..|...|+. .+|..+|+++ +.++. +.+... .....+..+ +.++|+|
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~~-----~~v~~~d~~~--~~~~~----~~~~g~-----~~~~~~~~~-~~~aD~V 62 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGLI-----SKVYGYDHNE--LHLKK----ALELGL-----VDEIVSFEE-LKKCDVI 62 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCC-----CEEEEEcCCH--HHHHH----HHHCCC-----CcccCCHHH-HhcCCEE
Confidence 5899999 699999999999988752 2688889863 22221 111110 001123334 4469999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 63 ilav 66 (275)
T PRK08507 63 FLAI 66 (275)
T ss_pred EEeC
Confidence 9985
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.015 Score=59.36 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-CCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-TGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al-~~a 82 (320)
+++||+|+| .|.+|..++..|...|+ +|..+|++. ... .+.++ .+....+..+.+ +++
T Consensus 51 ~~~kIgIIG-~G~mG~slA~~L~~~G~-------~V~~~dr~~--~~~--~A~~~---------Gv~~~~d~~e~~~~~a 109 (667)
T PLN02712 51 TQLKIAIIG-FGNYGQFLAKTLISQGH-------TVLAHSRSD--HSL--AARSL---------GVSFFLDPHDLCERHP 109 (667)
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHH--HHHHc---------CCEEeCCHHHHhhcCC
Confidence 468999999 79999999999998886 789999863 111 11111 122233555544 579
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+||++.
T Consensus 110 DvViLav 116 (667)
T PLN02712 110 DVILLCT 116 (667)
T ss_pred CEEEEcC
Confidence 9999985
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0059 Score=57.62 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=43.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|+||+|+||+|++|..+...|++...+. ..+++++.... ..+....+.... ..+....+ .+.++++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~---~~~l~~~ss~~----sg~~~~~f~g~~----~~v~~~~~-~~~~~~~Di 68 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFD---LIEPVFFSTSQ----AGGAAPSFGGKE----GTLQDAFD-IDALKKLDI 68 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCC---cCcEEEecchh----hCCcccccCCCc----ceEEecCC-hhHhcCCCE
Confidence 3799999999999999998666554442 12577765431 111111221110 11111112 356789999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
||++++
T Consensus 69 vf~a~~ 74 (369)
T PRK06598 69 IITCQG 74 (369)
T ss_pred EEECCC
Confidence 999875
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0098 Score=55.14 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
..+||+|+| +|.+|..++..|...+.. +|.++|++. +++...+..+.. .+....++.+++.++|
T Consensus 177 ~~~~V~ViG-aG~iG~~~a~~L~~~g~~------~V~v~~r~~--~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 240 (311)
T cd05213 177 KGKKVLVIG-AGEMGELAAKHLAAKGVA------EITIANRTY--ERAEELAKELGG-------NAVPLDELLELLNEAD 240 (311)
T ss_pred cCCEEEEEC-cHHHHHHHHHHHHHcCCC------EEEEEeCCH--HHHHHHHHHcCC-------eEEeHHHHHHHHhcCC
Confidence 458999999 599999999998876542 789999864 333333322211 1222234677789999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~ 137 (320)
+||.+.+.+.. . .......+.. .. ++..++-+++|-|+-
T Consensus 241 vVi~at~~~~~-----~-------~~~~~~~~~~--~~-~~~~viDlavPrdi~ 279 (311)
T cd05213 241 VVISATGAPHY-----A-------KIVERAMKKR--SG-KPRLIVDLAVPRDIE 279 (311)
T ss_pred EEEECCCCCch-----H-------HHHHHHHhhC--CC-CCeEEEEeCCCCCCc
Confidence 99998775531 0 1111111111 11 345677899998754
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.019 Score=52.97 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=43.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC---CC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---GV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~---~a 82 (320)
|||+|+| .|.+|++++..|+..|+ +|.++|+++ ++++. +.+. ......+..+.++ ++
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~-------~v~v~dr~~--~~~~~----~~~~------g~~~~~~~~e~~~~~~~~ 60 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH-------EVVGYDRNP--EAVEA----LAEE------GATGADSLEELVAKLPAP 60 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC-------eEEEEECCH--HHHHH----HHHC------CCeecCCHHHHHhhcCCC
Confidence 5899999 79999999999999887 899999863 33321 2211 1222234444444 46
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+||++.
T Consensus 61 dvvi~~v 67 (301)
T PRK09599 61 RVVWLMV 67 (301)
T ss_pred CEEEEEe
Confidence 9988874
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0032 Score=59.91 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+++||+|+||+|++|..++..|.++..+ +|.++..+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~------el~~l~s~ 72 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDF------EITVMTAD 72 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCC------eEEEEECh
Confidence 4579999999999999999998887543 88887764
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.011 Score=55.66 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=28.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEec
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI 44 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~ 44 (320)
++||+|+||+|++|+.++..|.....+ +++++..
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~------el~~~~~ 36 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWF------EVTALAA 36 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCc------eEEEEEc
Confidence 579999999999999999988875543 7887744
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.017 Score=52.07 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=43.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.|||+|+| +|.+|++++..|.+.+... ..++..+|+++ ++. .+....+..++++++|+
T Consensus 3 ~mkI~iIG-~G~mG~ai~~~l~~~~~~~---~~~i~~~~~~~--~~~----------------~~~~~~~~~~~~~~~D~ 60 (260)
T PTZ00431 3 NIRVGFIG-LGKMGSALAYGIENSNIIG---KENIYYHTPSK--KNT----------------PFVYLQSNEELAKTCDI 60 (260)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHhCCCCC---cceEEEECCCh--hcC----------------CeEEeCChHHHHHhCCE
Confidence 47999999 6999999999999877532 12588888753 111 01122355566789999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 61 Vilav 65 (260)
T PTZ00431 61 IVLAV 65 (260)
T ss_pred EEEEe
Confidence 99884
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0078 Score=55.49 Aligned_cols=116 Identities=10% Similarity=0.027 Sum_probs=64.5
Q ss_pred EEEcCCChhHHHHHHHHHhcC-cCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh------
Q 020875 9 LVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA------ 78 (320)
Q Consensus 9 ~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a------ 78 (320)
+||||++.+|.+++..|+++| . .|++.++++ +++.....++...... ...++....+..++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 71 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKW-------HVVMACRDF--LKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRR 71 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCC-------EEEEEeCCH--HHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHh
Confidence 489999999999999999988 5 788888763 3333332233211100 01112111111111
Q ss_pred -cCCCcEEEEeCCCCCC----CCCCH---HHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 79 -CTGVNIAVMVGGFPRK----EGMER---KDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 79 -l~~aDvVi~~ag~~~~----~~~~r---~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP 133 (320)
....|++|+.||+... ...+. ...+..|+.. ++.+++.+++.....+++|++|+-
T Consensus 72 ~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~ 138 (308)
T PLN00015 72 SGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSI 138 (308)
T ss_pred cCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEecc
Confidence 2357999999987421 11222 2356677665 455566665432113577777653
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.014 Score=54.61 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=46.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|. +.+||+|+||+|++|..+...|.++.+- ..++.++.... -.|....+.. .++.+......++.
T Consensus 1 ~~-~~~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~----saG~~~~~~~------~~~~v~~~~~~~~~ 65 (336)
T PRK08040 1 MS-EGWNIALLGATGAVGEALLELLAERQFP----VGELYALASEE----SAGETLRFGG------KSVTVQDAAEFDWS 65 (336)
T ss_pred CC-CCCEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccC----cCCceEEECC------cceEEEeCchhhcc
Confidence 53 5689999999999999999998886442 23777775432 1222222211 13333321233457
Q ss_pred CCcEEEEeCC
Q 020875 81 GVNIAVMVGG 90 (320)
Q Consensus 81 ~aDvVi~~ag 90 (320)
++|+||++++
T Consensus 66 ~~Dvvf~a~p 75 (336)
T PRK08040 66 QAQLAFFVAG 75 (336)
T ss_pred CCCEEEECCC
Confidence 8999999864
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.023 Score=52.70 Aligned_cols=103 Identities=10% Similarity=0.121 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc--------chhHHHHHHHhc-----ccC------CCCcceEEeCC--h
Q 020875 17 IGYALVPMIARGVMLGTDQPVILHMLDIPPAA--------EALNGVKMELVD-----AAF------PLLKGVVATTD--A 75 (320)
Q Consensus 17 vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~--------~~~~~~~~dl~~-----~~~------~~~~~v~~~~~--~ 75 (320)
+|+.++..++..|+ +|+|+|.++.. ++.........+ ... ....+++.+++ .
T Consensus 1 MG~giA~~~a~~G~-------~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 73 (314)
T PRK08269 1 MGQGIALAFAFAGH-------DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGA 73 (314)
T ss_pred CcHHHHHHHHhCCC-------eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcch
Confidence 47788888999897 89999997521 011111111111 000 01246666654 6
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
++++++||+||.+.- .+.+.-+.+...+.+.++|+++ +.||........+.
T Consensus 74 ~~a~~~aD~ViEav~--------------E~~~~K~~~f~~l~~~~~~~~i--laSntS~~~~~~la 124 (314)
T PRK08269 74 ADALADADLVFEAVP--------------EVLDAKREALRWLGRHVDADAI--IASTTSTFLVTDLQ 124 (314)
T ss_pred HHHhccCCEEEECCc--------------CCHHHHHHHHHHHHhhCCCCcE--EEEccccCCHHHHH
Confidence 688999999998751 2234456677778888766654 37776654433333
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.014 Score=54.27 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+.+||+|+| .|.+|.+++..|...|+ +|++.+++.. +....+.+ .. +.. .+..+++++||
T Consensus 16 ~gktIgIIG-~GsmG~AlA~~L~~sG~-------~Vvv~~r~~~--~s~~~A~~--~G-------~~~-~s~~eaa~~AD 75 (330)
T PRK05479 16 KGKKVAIIG-YGSQGHAHALNLRDSGV-------DVVVGLREGS--KSWKKAEA--DG-------FEV-LTVAEAAKWAD 75 (330)
T ss_pred CCCEEEEEe-eHHHHHHHHHHHHHCCC-------EEEEEECCch--hhHHHHHH--CC-------Cee-CCHHHHHhcCC
Confidence 357999999 69999999999999887 7777776431 11111111 11 112 26778899999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+|+++.
T Consensus 76 VVvLaV 81 (330)
T PRK05479 76 VIMILL 81 (330)
T ss_pred EEEEcC
Confidence 999985
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0023 Score=57.92 Aligned_cols=109 Identities=15% Similarity=0.256 Sum_probs=68.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc----CcCCCCCCeEEEEEecCCc----cchhHHHHHHHhcccCCCCcceEEeCChhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG----VMLGTDQPVILHMLDIPPA----AEALNGVKMELVDAAFPLLKGVVATTDAVE 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~----~~~~~~~~~ev~l~D~~~~----~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (320)
.||++.| +|..|..++..|... |+-...-...+.++|++.- +..+......+.+.. .. ....++.+
T Consensus 26 ~~iv~~G-AGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~----~~-~~~~~L~e 99 (279)
T cd05312 26 QRILFLG-AGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD----EE-KEGKSLLE 99 (279)
T ss_pred cEEEEEC-cCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc----Cc-ccCCCHHH
Confidence 6999999 599999999888765 6411011127899997521 111222222222211 00 12357999
Q ss_pred hcC--CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 78 ACT--GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 78 al~--~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
+++ ++|++|=+.+.+ | -+.+++++.|.+++ ++.+|+-.|||..
T Consensus 100 ~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 144 (279)
T cd05312 100 VVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSN-ERPIIFALSNPTS 144 (279)
T ss_pred HHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcC-CCCEEEECCCcCC
Confidence 999 899988765433 2 13477889999888 6778888899974
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.047 Score=50.62 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=96.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-----------CcceEE-e
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-----------LKGVVA-T 72 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-----------~~~v~~-~ 72 (320)
.+-+.||||+..+|...+..|+.+|. +|++..++. ++.+....++....... ...+.. .
T Consensus 35 ~~~~vVTGansGIG~eta~~La~~Ga-------~Vv~~~R~~--~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa 105 (314)
T KOG1208|consen 35 GKVALVTGATSGIGFETARELALRGA-------HVVLACRNE--ERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFA 105 (314)
T ss_pred CcEEEEECCCCchHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHH
Confidence 35788999999999999999999995 899988874 44555555555421110 011111 1
Q ss_pred CChhhhcCCCcEEEEeCCCCCCCCC---CH-HHHHHhhH----HHHHHHHHHHhhhcCCCeEEEEEcCcch----hhHHH
Q 020875 73 TDAVEACTGVNIAVMVGGFPRKEGM---ER-KDVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPAN----TNALI 140 (320)
Q Consensus 73 ~~~~~al~~aDvVi~~ag~~~~~~~---~r-~~~~~~n~----~~~~~i~~~i~~~~~~~~~viv~snP~~----~~~~~ 140 (320)
....+....-|+.|.-||+...+.. +. +..+..|. -.+..+.+.+++.. | +++|++|+-.. -+..+
T Consensus 106 ~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~-~-~RIV~vsS~~~~~~~~~~~l 183 (314)
T KOG1208|consen 106 EEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSA-P-SRIVNVSSILGGGKIDLKDL 183 (314)
T ss_pred HHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCC-C-CCEEEEcCccccCccchhhc
Confidence 1122334567999999998543321 11 12344453 35666777777765 4 78888886332 01111
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
-.+..+.+...+.|+.+.+...-+...+++++.- +|.
T Consensus 184 ~~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~---~V~ 220 (314)
T KOG1208|consen 184 SGEKAKLYSSDAAYALSKLANVLLANELAKRLKK---GVT 220 (314)
T ss_pred cchhccCccchhHHHHhHHHHHHHHHHHHHHhhc---Cce
Confidence 1111111333335778888888888889998875 555
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0012 Score=62.88 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=44.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhhcCCCcEEE
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGVNIAV 86 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~~aDvVi 86 (320)
|+|+|| |++|+.++..|++.... .+|++.|++. ++++.....+...... ..-++....++.+.++++|+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~-----~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVi 72 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPF-----EEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVI 72 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE------EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCC-----CcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEE
Confidence 789997 99999999999987642 1799999974 4444333222111000 0011111223667889999999
Q ss_pred EeCCC
Q 020875 87 MVGGF 91 (320)
Q Consensus 87 ~~ag~ 91 (320)
++++.
T Consensus 73 n~~gp 77 (386)
T PF03435_consen 73 NCAGP 77 (386)
T ss_dssp E-SSG
T ss_pred ECCcc
Confidence 99874
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.026 Score=50.72 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=45.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.+|++++..|...++. ...+.++|+++ ++++.....+ ..+....+..+.++++|+|
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~g~~----~~~i~v~~r~~--~~~~~l~~~~--------~~~~~~~~~~~~~~~aDvV 65 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTSPAD----VSEIIVSPRNA--QIAARLAERF--------PKVRIAKDNQAVVDRSDVV 65 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCC----hheEEEECCCH--HHHHHHHHHc--------CCceEeCCHHHHHHhCCEE
Confidence 4899999 799999999999987741 12567788753 3332211111 0123344666778899999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 66 ilav 69 (258)
T PRK06476 66 FLAV 69 (258)
T ss_pred EEEe
Confidence 9986
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.018 Score=51.92 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=60.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
++||+++| +|.+|++++..|+..+... ..+|.+.++++ ++.. ++.+.. +. . .+++..++...+|+
T Consensus 1 ~~~IgfIG-~G~Mg~Ai~~gl~~~g~~~---~~~I~v~~~~~--e~~~----~l~~~~-g~--~--~~~~~~~~~~~adv 65 (266)
T COG0345 1 MMKIGFIG-AGNMGEAILSGLLKSGALP---PEEIIVTNRSE--EKRA----ALAAEY-GV--V--TTTDNQEAVEEADV 65 (266)
T ss_pred CceEEEEc-cCHHHHHHHHHHHhcCCCC---cceEEEeCCCH--HHHH----HHHHHc-CC--c--ccCcHHHHHhhCCE
Confidence 57999999 6999999999999988422 13788888763 3332 222211 11 1 14566788899999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
||++.- | +.+.++++.++... ++..+|.+.
T Consensus 66 v~LavK----P------------q~~~~vl~~l~~~~-~~~lvISia 95 (266)
T COG0345 66 VFLAVK----P------------QDLEEVLSKLKPLT-KDKLVISIA 95 (266)
T ss_pred EEEEeC----h------------HhHHHHHHHhhccc-CCCEEEEEe
Confidence 999862 2 23456666776532 444455554
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.017 Score=54.33 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=27.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~ 45 (320)
+||+|+||+|++|..++..|.+.... +++ +++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~------el~~l~~s~ 35 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV------EITYLVSSR 35 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc------eEEEEeccc
Confidence 58999999999999999998865432 676 55654
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.019 Score=55.88 Aligned_cols=117 Identities=20% Similarity=0.221 Sum_probs=66.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|..+.++|.|+|+ |.+|..++..|++.|+ +|+++|.+.. +.+.....++.... .++.......+...
T Consensus 1 ~~~~~k~v~iiG~-g~~G~~~A~~l~~~G~-------~V~~~d~~~~-~~~~~~~~~l~~~~----~~~~~~~~~~~~~~ 67 (450)
T PRK14106 1 MELKGKKVLVVGA-GVSGLALAKFLKKLGA-------KVILTDEKEE-DQLKEALEELGELG----IELVLGEYPEEFLE 67 (450)
T ss_pred CCcCCCEEEEECC-CHHHHHHHHHHHHCCC-------EEEEEeCCch-HHHHHHHHHHHhcC----CEEEeCCcchhHhh
Confidence 6556689999995 7799999999999997 8999998632 22222222232111 11211111223457
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
++|+||.++|.+... ......-..++++...+....+.. + .++|-+|.+.
T Consensus 68 ~~d~vv~~~g~~~~~-~~~~~a~~~~i~~~~~~~~~~~~~--~-~~vI~ITGS~ 117 (450)
T PRK14106 68 GVDLVVVSPGVPLDS-PPVVQAHKKGIEVIGEVELAYRFS--K-APIVAITGTN 117 (450)
T ss_pred cCCEEEECCCCCCCC-HHHHHHHHCCCcEEeHHHHHHhhc--C-CCEEEEeCCC
Confidence 899999998875311 111112234555555444433322 2 3466776655
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.016 Score=54.54 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=44.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC-ChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-DAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~-~~~~al~~aDv 84 (320)
+||+|+||+|.||+.+...|.+...+. ..+++++...+ ..+....+.. ....+.. +..++++++|+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp---~~~~~~~ss~~----s~g~~~~f~~------~~~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFD---AIRPVFFSTSQ----LGQAAPSFGG------TTGTLQDAFDIDALKALDI 67 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCc---cccEEEEEchh----hCCCcCCCCC------CcceEEcCcccccccCCCE
Confidence 489999999999999999888443332 13677777532 2222221111 1122221 22247899999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
||+++|
T Consensus 68 vffa~g 73 (366)
T TIGR01745 68 IITCQG 73 (366)
T ss_pred EEEcCC
Confidence 999886
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.016 Score=51.82 Aligned_cols=110 Identities=17% Similarity=0.262 Sum_probs=68.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc----CcCCCCCCeEEEEEecCC----ccchhHHHHHHHhcccCCCCcceEEeCChhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG----VMLGTDQPVILHMLDIPP----AAEALNGVKMELVDAAFPLLKGVVATTDAVE 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~----~~~~~~~~~ev~l~D~~~----~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (320)
.||++.| +|..|..++..|+.. |+-..+-...+.++|++. +++.+......+.+...+ .....++.+
T Consensus 26 ~riv~~G-AGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~----~~~~~~L~e 100 (255)
T PF03949_consen 26 QRIVFFG-AGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNP----EKDWGSLLE 100 (255)
T ss_dssp -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSST----TT--SSHHH
T ss_pred cEEEEeC-CChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcc----cccccCHHH
Confidence 5999999 599999999988766 652000002699999752 112222222233222211 111147899
Q ss_pred hcCCC--cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 78 ACTGV--NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 78 al~~a--DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
+++++ |++|=+.+.+. -+.+++++.|.+++ +..+++-.|||..
T Consensus 101 av~~~kPtvLIG~S~~~g--------------~ft~evv~~Ma~~~-erPIIF~LSNPt~ 145 (255)
T PF03949_consen 101 AVKGAKPTVLIGLSGQGG--------------AFTEEVVRAMAKHN-ERPIIFPLSNPTP 145 (255)
T ss_dssp HHHCH--SEEEECSSSTT--------------SS-HHHHHHCHHHS-SSEEEEE-SSSCG
T ss_pred HHHhcCCCEEEEecCCCC--------------cCCHHHHHHHhccC-CCCEEEECCCCCC
Confidence 99999 99988766432 13478899999998 6788888899975
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.023 Score=55.88 Aligned_cols=73 Identities=10% Similarity=0.054 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC---
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--- 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--- 80 (320)
+.++|++|| .|.+|++++..|+..|+ +|.++|++. ++.+.......... ...+....+..++.+
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~~G~-------~V~V~NRt~--~k~~~l~~~~~~~G---a~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKEG---NLPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHhCCC-------eEEEECCCH--HHHHHHHHhhhhcC---CcccccCCCHHHHHhcCC
Confidence 467999999 89999999999999997 899999864 33332111011000 011222334445444
Q ss_pred CCcEEEEeC
Q 020875 81 GVNIAVMVG 89 (320)
Q Consensus 81 ~aDvVi~~a 89 (320)
.+|+||.+.
T Consensus 72 ~~dvIi~~v 80 (493)
T PLN02350 72 KPRSVIILV 80 (493)
T ss_pred CCCEEEEEC
Confidence 599999975
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0057 Score=54.12 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=29.8
Q ss_pred CCEEEEEcCC----------------ChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 5 PVRVLVTGAA----------------GQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 5 ~~kI~IiGA~----------------G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.+||+||+|. ||+|++++..|+.+|. +|+++|..
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga-------~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA-------HVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC-------eEEEEeCC
Confidence 4699999876 9999999999999997 89988863
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.036 Score=50.12 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=44.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeE-EEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI-LHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~e-v~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+|||+|+| +|.+|..++..|...+. + .+ +.++|++. +++.. +.+.. .....+++.+.+.++|
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~-~----~elv~v~d~~~--~~a~~----~a~~~-----~~~~~~~~~ell~~~D 63 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRI-N----AELYAFYDRNL--EKAEN----LASKT-----GAKACLSIDELVEDVD 63 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCC-C----eEEEEEECCCH--HHHHH----HHHhc-----CCeeECCHHHHhcCCC
Confidence 47999999 69999999988876531 1 14 45788763 33322 21110 1223346666678999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+|++++.
T Consensus 64 vVvi~a~ 70 (265)
T PRK13304 64 LVVECAS 70 (265)
T ss_pred EEEEcCC
Confidence 9999863
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=53.76 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc--CcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~--~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
+++||+|+| .|.+|+.++..|... ++ ++. ++|+++ ++.+.....+. .....+++.+.+.
T Consensus 5 ~~irIGIIG-~G~IG~~~a~~L~~~~~~~-------el~aV~dr~~--~~a~~~a~~~g--------~~~~~~~~eell~ 66 (271)
T PRK13302 5 PELRVAIAG-LGAIGKAIAQALDRGLPGL-------TLSAVAVRDP--QRHADFIWGLR--------RPPPVVPLDQLAT 66 (271)
T ss_pred CeeEEEEEC-ccHHHHHHHHHHHhcCCCe-------EEEEEECCCH--HHHHHHHHhcC--------CCcccCCHHHHhc
Confidence 358999999 799999999888763 33 554 778763 33332221111 0111235667778
Q ss_pred CCcEEEEeCC
Q 020875 81 GVNIAVMVGG 90 (320)
Q Consensus 81 ~aDvVi~~ag 90 (320)
++|+|++++.
T Consensus 67 ~~D~Vvi~tp 76 (271)
T PRK13302 67 HADIVVEAAP 76 (271)
T ss_pred CCCEEEECCC
Confidence 9999999874
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0036 Score=55.82 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=68.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcC-C---CCCCeEEEEEecCC----ccchhHHHHHHHhcccCCCCcceEEeCChhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVML-G---TDQPVILHMLDIPP----AAEALNGVKMELVDAAFPLLKGVVATTDAVE 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~-~---~~~~~ev~l~D~~~----~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (320)
.||++.| +|..|..++..|...+.. | ..-...++++|... ++..+......+.+. ..+-....++.+
T Consensus 26 ~riv~~G-AGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~----~~~~~~~~~L~e 100 (254)
T cd00762 26 HKVLFNG-AGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARF----ANPERESGDLED 100 (254)
T ss_pred cEEEEEC-cCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHH----cCcccccCCHHH
Confidence 6999999 599999999888765431 1 00112689999752 111111111111111 111112257999
Q ss_pred hcC--CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 78 ACT--GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 78 al~--~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
+++ ++|++|=+.+.+. -+.+++++.|.+++ +..++.-.|||..
T Consensus 101 av~~~kptvlIG~S~~~g--------------~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 145 (254)
T cd00762 101 AVEAAKPDFLIGVSRVGG--------------AFTPEVIRAXAEIN-ERPVIFALSNPTS 145 (254)
T ss_pred HHHhhCCCEEEEeCCCCC--------------CCCHHHHHHHhhcC-CCCEEEECCCcCC
Confidence 999 9999987765442 13477889999888 6778888899974
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.021 Score=53.66 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=21.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGV 29 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~ 29 (320)
|+||+|+||+|.+|..++..|....
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p 26 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP 26 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC
Confidence 4799999999999999999888653
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.019 Score=53.13 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=44.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH-HHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK-MELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~-~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++||+|+||+|.||+.++..|.++.. . ..++.++-..+ -.|+. .++..-.......+ ....+++++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~---~~~~~~~AS~r----SaG~~~~~f~~~~~~v~~~~----~~~~~~~~~D 68 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-P---FEELVLLASAR----SAGKKYIEFGGKSIGVPEDA----ADEFVFSDVD 68 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-C---cceEEEEeccc----ccCCccccccCccccCcccc----ccccccccCC
Confidence 47999999999999999999998633 2 12455665432 12332 33322111110000 1234567999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+||+++|
T Consensus 69 ivf~~ag 75 (334)
T COG0136 69 IVFFAAG 75 (334)
T ss_pred EEEEeCc
Confidence 9999986
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0096 Score=51.98 Aligned_cols=160 Identities=17% Similarity=0.179 Sum_probs=89.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-----CCcceEEeCCh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTDA 75 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-----~~~~v~~~~~~ 75 (320)
|.-+.+.++++|++|-||..+...|+++|.. -+++.|+-+ ..+.. ..|.....+ ..-++....++
T Consensus 1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik------~~~i~~~~E---n~~a~-akL~ai~p~~~v~F~~~DVt~~~~~ 70 (261)
T KOG4169|consen 1 MDLTGKNALVTGGAGGIGLATSKALLEKGIK------VLVIDDSEE---NPEAI-AKLQAINPSVSVIFIKCDVTNRGDL 70 (261)
T ss_pred CcccCceEEEecCCchhhHHHHHHHHHcCch------heeehhhhh---CHHHH-HHHhccCCCceEEEEEeccccHHHH
Confidence 4556678999999999999999999999984 344444433 23322 233322211 11344444455
Q ss_pred hhhc-------CCCcEEEEeCCCCCCCCCCHHHHHHhhHH----HHHHHHHHHhhh-cCCCeEEEEEcCcchhhHHHHHH
Q 020875 76 VEAC-------TGVNIAVMVGGFPRKEGMERKDVMSKNVS----IYKAQASALEQH-AAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 76 ~~al-------~~aDvVi~~ag~~~~~~~~r~~~~~~n~~----~~~~i~~~i~~~-~~~~~~viv~snP~~~~~~~~~~ 143 (320)
++++ ...|++|.-||+....+ .+..+..|+. .+....+.+.+. +.+.+++++.|+-.++......
T Consensus 71 ~~~f~ki~~~fg~iDIlINgAGi~~dkd--~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~- 147 (261)
T KOG4169|consen 71 EAAFDKILATFGTIDILINGAGILDDKD--WERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVF- 147 (261)
T ss_pred HHHHHHHHHHhCceEEEEcccccccchh--HHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccc-
Confidence 5544 45799999999865322 3333445543 334445555553 2266889999865443211100
Q ss_pred HCCCCCCCc--EEEeehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 144 FAPSIPAKN--ITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 144 ~~~~~~~~~--i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
+-|...+ |++.|. -+|+......+.|+...
T Consensus 148 --pVY~AsKaGVvgFTR--------Sla~~ayy~~sGV~~~a 179 (261)
T KOG4169|consen 148 --PVYAASKAGVVGFTR--------SLADLAYYQRSGVRFNA 179 (261)
T ss_pred --hhhhhcccceeeeeh--------hhhhhhhHhhcCEEEEE
Confidence 1111222 445443 24555555667888554
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.026 Score=53.84 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||+.++..|..-|. +|+.+|+..... ....++ .++...++.+.++.||+
T Consensus 192 gktVGIvG-~G~IG~~vA~~l~~fG~-------~V~~~dr~~~~~---~~~~~~---------g~~~~~~l~ell~~aDv 251 (385)
T PRK07574 192 GMTVGIVG-AGRIGLAVLRRLKPFDV-------KLHYTDRHRLPE---EVEQEL---------GLTYHVSFDSLVSVCDV 251 (385)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEECCCCCch---hhHhhc---------CceecCCHHHHhhcCCE
Confidence 47999999 79999999999988776 899999863111 000011 12222468889999999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
|++...
T Consensus 252 V~l~lP 257 (385)
T PRK07574 252 VTIHCP 257 (385)
T ss_pred EEEcCC
Confidence 999864
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.02 Score=53.66 Aligned_cols=64 Identities=13% Similarity=-0.038 Sum_probs=46.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||+.++..|...|+ +|..+|+... ... +.... +. ..++.+.+++||+
T Consensus 150 gktvgIiG-~G~IG~~vA~~l~~~G~-------~V~~~d~~~~--~~~----~~~~~-------~~-~~~l~ell~~aDi 207 (333)
T PRK13243 150 GKTIGIIG-FGRIGQAVARRAKGFGM-------RILYYSRTRK--PEA----EKELG-------AE-YRPLEELLRESDF 207 (333)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-------EEEEECCCCC--hhh----HHHcC-------CE-ecCHHHHHhhCCE
Confidence 47999999 79999999999988776 8999998632 111 11111 11 1367888999999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
|+++..
T Consensus 208 V~l~lP 213 (333)
T PRK13243 208 VSLHVP 213 (333)
T ss_pred EEEeCC
Confidence 999863
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.02 Score=53.09 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=57.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||+.++..|..-|+ +|..+|+... ...+ +.. +....++.+.+++||+
T Consensus 136 g~tvgIvG-~G~IG~~vA~~l~afG~-------~V~~~~~~~~--~~~~----~~~--------~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 136 DFTIGILG-AGVLGSKVAQSLQTWGF-------PLRCWSRSRK--SWPG----VQS--------FAGREELSAFLSQTRV 193 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCCC--CCCC----cee--------ecccccHHHHHhcCCE
Confidence 46999999 79999999999998776 8999997531 1110 000 0011367899999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
|+++..... .++ ..+ + .+.+.+.. +++.+|+++
T Consensus 194 vv~~lPlt~---~T~--------~li-~-~~~l~~mk-~ga~lIN~a 226 (312)
T PRK15469 194 LINLLPNTP---ETV--------GII-N-QQLLEQLP-DGAYLLNLA 226 (312)
T ss_pred EEECCCCCH---HHH--------HHh-H-HHHHhcCC-CCcEEEECC
Confidence 999863221 111 111 1 23344443 678889887
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.017 Score=56.57 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=43.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC---hhhhcCCCc
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD---AVEACTGVN 83 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~---~~~al~~aD 83 (320)
+|+|+| .|.+|.+++..|+..|+ +|.++|+++ ++++. +.+.... ...+....+ ..+.++++|
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~-------~V~v~drt~--~~~~~----l~~~~~~-g~~~~~~~s~~e~v~~l~~~d 65 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF-------TVSVYNRTP--EKTDE----FLAEHAK-GKKIVGAYSIEEFVQSLERPR 65 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHH----HHhhccC-CCCceecCCHHHHHhhcCCCC
Confidence 489999 79999999999999997 899999874 33332 2211000 001222223 334556799
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 66 vIil~v 71 (467)
T TIGR00873 66 KIMLMV 71 (467)
T ss_pred EEEEEC
Confidence 988875
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.016 Score=55.94 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=63.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
..+|+|+| +|.+|..++..|...|.. +|.+++++. +++...+..+.. ......+..+++.++|+
T Consensus 180 ~~~VlViG-aG~iG~~~a~~L~~~G~~------~V~v~~rs~--~ra~~la~~~g~-------~~i~~~~l~~~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIG-AGEMGELVAKHLLRKGVG------KILIANRTY--ERAEDLAKELGG-------EAVKFEDLEEYLAEADI 243 (417)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCCCC------EEEEEeCCH--HHHHHHHHHcCC-------eEeeHHHHHHHHhhCCE
Confidence 47999999 599999999999887752 799999864 333322222211 11111356778899999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~ 137 (320)
||.+.+.+.. -.+ .+.++.+.+....+.+++-+++|-|+-
T Consensus 244 Vi~aT~s~~~-ii~------------~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 244 VISSTGAPHP-IVS------------KEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EEECCCCCCc-eEc------------HHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 9998765431 111 111222211111235777889997764
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.023 Score=53.31 Aligned_cols=70 Identities=21% Similarity=0.383 Sum_probs=43.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEEE
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAV 86 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvVi 86 (320)
||+|+||+|++|..++..|.++++- ..+++++...++ .+....+.. .++....-..++++++|+||
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp----~~~l~~~as~~~----~g~~~~~~~------~~~~~~~~~~~~~~~~D~v~ 66 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFP----IDKLVLLASDRS----AGRKVTFKG------KELEVNEAKIESFEGIDIAL 66 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCC----hhhEEEEecccc----CCCeeeeCC------eeEEEEeCChHHhcCCCEEE
Confidence 6899999999999999999887652 235666654321 111111111 12222211235678999999
Q ss_pred EeCC
Q 020875 87 MVGG 90 (320)
Q Consensus 87 ~~ag 90 (320)
+++|
T Consensus 67 ~a~g 70 (339)
T TIGR01296 67 FSAG 70 (339)
T ss_pred ECCC
Confidence 9876
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.014 Score=53.60 Aligned_cols=63 Identities=24% Similarity=0.369 Sum_probs=45.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||++|| .|.+|++++..|++.|+ ++.++|+++ +.+ ++... ......+..++.+++|+|
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~-------~v~v~~~~~---~~~----~~~~~------g~~~~~s~~~~~~~advV 59 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH-------QLHVTTIGP---VAD----ELLSL------GAVSVETARQVTEASDII 59 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC-------eEEEEeCCH---hHH----HHHHc------CCeecCCHHHHHhcCCEE
Confidence 4899999 79999999999999987 788899863 111 12111 112223566778899999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 60 i~~v 63 (292)
T PRK15059 60 FIMV 63 (292)
T ss_pred EEeC
Confidence 9975
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.011 Score=54.87 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=30.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+|+||+|+||+|+.|..|...|...... |+.++...
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v------e~~~~ss~ 36 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDV------ELILISSR 36 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCe------EEEEeech
Confidence 3679999999999999999999887653 77777754
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.027 Score=52.52 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
...+++|+| +|..|.+.+..+...... .+|.++|++. ++++....++.+. ...+....+..+++++||
T Consensus 127 ~~~~lgiiG-~G~qA~~~l~al~~~~~~-----~~v~V~~r~~--~~~~~~~~~~~~~----g~~v~~~~~~~eav~~aD 194 (325)
T TIGR02371 127 DSSVLGIIG-AGRQAWTQLEALSRVFDL-----EEVSVYCRTP--STREKFALRASDY----EVPVRAATDPREAVEGCD 194 (325)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCC-----CEEEEECCCH--HHHHHHHHHHHhh----CCcEEEeCCHHHHhccCC
Confidence 357999999 799999877666543222 3899999974 4454444444321 224556678899999999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+|+.+.
T Consensus 195 iVitaT 200 (325)
T TIGR02371 195 ILVTTT 200 (325)
T ss_pred EEEEec
Confidence 999865
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.065 Score=46.40 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=30.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
..||+|+| +|.+|+.++..|+..|+ + +++|+|.+
T Consensus 21 ~~~V~IvG-~GglGs~ia~~La~~Gv-g-----~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICG-LGGLGSNVAINLARAGI-G-----KLILVDFD 54 (200)
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHcCC-C-----EEEEECCC
Confidence 46999999 59999999999999986 2 79999976
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.012 Score=49.84 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=45.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||+.++..|..-|. +|..+|+.... . . ...+. .+ ...++.+.++.||+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~fG~-------~V~~~d~~~~~---~-~--~~~~~------~~-~~~~l~ell~~aDi 94 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAFGM-------RVIGYDRSPKP---E-E--GADEF------GV-EYVSLDELLAQADI 94 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHTT--------EEEEEESSCHH---H-H--HHHHT------TE-EESSHHHHHHH-SE
T ss_pred CCEEEEEE-EcCCcCeEeeeeecCCc-------eeEEecccCCh---h-h--hcccc------cc-eeeehhhhcchhhh
Confidence 47999999 79999999999998776 89999987421 1 1 11111 11 12378889999999
Q ss_pred EEEeCCC
Q 020875 85 AVMVGGF 91 (320)
Q Consensus 85 Vi~~ag~ 91 (320)
|+++...
T Consensus 95 v~~~~pl 101 (178)
T PF02826_consen 95 VSLHLPL 101 (178)
T ss_dssp EEE-SSS
T ss_pred hhhhhcc
Confidence 9998643
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.055 Score=55.34 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC-CC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-GV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~-~a 82 (320)
+++||+||| .|.+|..++..|...|+ +|..+|++. . . ..+.++ . +....+..+.++ ++
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G~-------~V~~~dr~~--~-~-~~a~~~--G-------v~~~~~~~el~~~~a 426 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQGH-------TVLAYSRSD--Y-S-DEAQKL--G-------VSYFSDADDLCEEHP 426 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCcC-------EEEEEECCh--H-H-HHHHHc--C-------CeEeCCHHHHHhcCC
Confidence 458999999 79999999999998776 799999863 1 1 111111 1 122345555554 58
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+||++.
T Consensus 427 DvVILav 433 (667)
T PLN02712 427 EVILLCT 433 (667)
T ss_pred CEEEECC
Confidence 9999985
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.21 Score=46.13 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcC--CChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc--------c--------C
Q 020875 2 AKEPVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--------A--------F 63 (320)
Q Consensus 2 ~~~~~kI~IiGA--~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~--------~--------~ 63 (320)
+-+.+.++|||| +..||.+++..|+..|. .|++ .++. ++++....++... . .
T Consensus 6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga-------~Vv~-~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (303)
T PLN02730 6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGA-------EILV-GTWV--PALNIFETSLRRGKFDESRKLPDGSLMEITK 75 (303)
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-------EEEE-EeCc--chhhHHHHhhhccccchhhhcccccccCcCe
Confidence 334568999998 68999999999999986 7777 4331 2333222222110 0 0
Q ss_pred CCCcceEE--eC------------------C-------hhhhcCCCcEEEEeCCCCC---CC--CCCH---HHHHHhhHH
Q 020875 64 PLLKGVVA--TT------------------D-------AVEACTGVNIAVMVGGFPR---KE--GMER---KDVMSKNVS 108 (320)
Q Consensus 64 ~~~~~v~~--~~------------------~-------~~~al~~aDvVi~~ag~~~---~~--~~~r---~~~~~~n~~ 108 (320)
.+..++.. .. + ..+.+-..|++|+.||... .+ ..+. ...+..|+.
T Consensus 76 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~ 155 (303)
T PLN02730 76 VYPLDAVFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSY 155 (303)
T ss_pred eeecceecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhH
Confidence 00112210 00 1 1122345799999996421 11 1222 334667776
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc-EEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 109 IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 109 ~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~-i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
....+.+.+...-...+.+|++|+-... ...|... .|+.++---..|-+.++..++- ...|+.-
T Consensus 156 ~~~~l~~~~~p~m~~~G~II~isS~a~~---------~~~p~~~~~Y~asKaAl~~l~~~la~El~~-~~gIrVn 220 (303)
T PLN02730 156 SFVSLLQHFGPIMNPGGASISLTYIASE---------RIIPGYGGGMSSAKAALESDTRVLAFEAGR-KYKIRVN 220 (303)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEechhhc---------CCCCCCchhhHHHHHHHHHHHHHHHHHhCc-CCCeEEE
Confidence 6655555544431123677777753211 1222222 3566666666777778887752 2456643
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.044 Score=51.45 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVM 30 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~ 30 (320)
+||+|+||+|++|+.++..|.+.+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~ 25 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPY 25 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC
Confidence 5899999999999999998877654
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.033 Score=47.21 Aligned_cols=119 Identities=17% Similarity=0.159 Sum_probs=61.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-ccchhHHHHHHHhcccCCC---CcceEEeCChhhhc---
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVDAAFPL---LKGVVATTDAVEAC--- 79 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-~~~~~~~~~~dl~~~~~~~---~~~v~~~~~~~~al--- 79 (320)
.++|+||.|.+|..++..|++++.. .++|+.++. ...........+....... ..++....+..+++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~------~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~ 75 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGAR------RLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQL 75 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-S------EEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCC------EEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHH
Confidence 3689999999999999999998853 899999872 1111222233333322110 11221112222332
Q ss_pred ----CCCcEEEEeCCCCCCC---CCCHHH---HHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 80 ----TGVNIAVMVGGFPRKE---GMERKD---VMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 80 ----~~aDvVi~~ag~~~~~---~~~r~~---~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
...|.|||+||..... ..+..+ .+..-+....++.+..+... .+ .+|++|+-
T Consensus 76 ~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~-l~-~~i~~SSi 137 (181)
T PF08659_consen 76 RQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRP-LD-FFILFSSI 137 (181)
T ss_dssp HTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTT-TS-EEEEEEEH
T ss_pred HhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCC-CC-eEEEECCh
Confidence 3457899999986432 223332 34556677778888887753 43 56666643
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.019 Score=53.72 Aligned_cols=63 Identities=25% Similarity=0.248 Sum_probs=44.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
.++|+|+| .|.+|+.++..|+. .|. +|..+|+.... . .... +....++.+++++||
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~~g~-------~V~~~d~~~~~--~------~~~~-------~~~~~~l~ell~~aD 202 (332)
T PRK08605 146 DLKVAVIG-TGRIGLAVAKIFAKGYGS-------DVVAYDPFPNA--K------AATY-------VDYKDTIEEAVEGAD 202 (332)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCC-------EEEEECCCccH--h------HHhh-------ccccCCHHHHHHhCC
Confidence 47999999 69999999999853 343 78899975311 1 0000 112236788999999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+|+++..
T Consensus 203 vIvl~lP 209 (332)
T PRK08605 203 IVTLHMP 209 (332)
T ss_pred EEEEeCC
Confidence 9999863
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.033 Score=50.96 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=43.9
Q ss_pred EEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEEEEeC
Q 020875 10 VTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVG 89 (320)
Q Consensus 10 IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvVi~~a 89 (320)
++| .|.+|.+++..|+..|+ +|.++|+++ ++.+ ++... ......+..++++++|+||++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~------g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH-------PVRVFDLFP--DAVE----EAVAA------GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC-------eEEEEeCCH--HHHH----HHHHc------CCeecCCHHHHHhcCCEEEEeC
Confidence 478 79999999999999887 899999864 3222 22221 1223446778899999999985
Q ss_pred C
Q 020875 90 G 90 (320)
Q Consensus 90 g 90 (320)
.
T Consensus 61 p 61 (288)
T TIGR01692 61 P 61 (288)
T ss_pred C
Confidence 3
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.085 Score=46.57 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC----Cccc-hhHHHHHHHhcccCCCCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP----PAAE-ALNGVKMELVDAAFPLLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~----~~~~-~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (320)
+..||+|+| +|..|..++..|...|.- ..++.++|++ .++. .+......+.+.... ... ..++.++
T Consensus 24 ~~~rvlvlG-AGgAg~aiA~~L~~~G~~----~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~--~~~--~~~l~~~ 94 (226)
T cd05311 24 EEVKIVING-AGAAGIAIARLLLAAGAK----PENIVVVDSKGVIYEGREDDLNPDKNEIAKETNP--EKT--GGTLKEA 94 (226)
T ss_pred cCCEEEEEC-chHHHHHHHHHHHHcCcC----cceEEEEeCCCccccccchhhhHHHHHHHHHhcc--Ccc--cCCHHHH
Confidence 347999999 599999999999988762 1269999997 2211 121121222211100 011 1256688
Q ss_pred cCCCcEEEEeCC
Q 020875 79 CTGVNIAVMVGG 90 (320)
Q Consensus 79 l~~aDvVi~~ag 90 (320)
++++|+||.+.+
T Consensus 95 l~~~dvlIgaT~ 106 (226)
T cd05311 95 LKGADVFIGVSR 106 (226)
T ss_pred HhcCCEEEeCCC
Confidence 999999999865
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.044 Score=50.69 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVM 30 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~ 30 (320)
++||+|+||+|++|..++..|.+...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~ 27 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD 27 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 57999999999999999998887764
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.02 Score=51.58 Aligned_cols=67 Identities=25% Similarity=0.343 Sum_probs=43.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
||||+|+|++|.+|+.++..+.+..-+ +++ ++|++. ++.... . ...+....++.+.++++|
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~------elvav~d~~~--~~~~~~----~------~~~i~~~~dl~~ll~~~D 62 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL------ELVAAVDRPG--SPLVGQ----G------ALGVAITDDLEAVLADAD 62 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC------EEEEEEecCC--cccccc----C------CCCccccCCHHHhccCCC
Confidence 579999997799999999887764322 554 678754 222111 1 112334457777778899
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||.+.
T Consensus 63 vVid~t 68 (257)
T PRK00048 63 VLIDFT 68 (257)
T ss_pred EEEECC
Confidence 999764
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.082 Score=46.70 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHh----cccCCCCcceEE-eC--
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV----DAAFPLLKGVVA-TT-- 73 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~----~~~~~~~~~v~~-~~-- 73 (320)
|...++.|.||||++.+|..++..|++.|. .+++..++.....++....... ........+++. ..
T Consensus 1 ~~~~~~~ilITGas~GiG~aia~~l~~~G~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v 73 (251)
T COG1028 1 MDLSGKVALVTGASSGIGRAIARALAREGA-------RVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESV 73 (251)
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------eEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHH
Confidence 455678999999999999999999998886 5555554422111111111111 000000112221 11
Q ss_pred -----ChhhhcCCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 74 -----DAVEACTGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 74 -----~~~~al~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
...+.+...|++|+.||.... + ..+ -.+.+..|+.....+.+.+....... ++|++++.
T Consensus 74 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~Iv~isS~ 144 (251)
T COG1028 74 EALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ-RIVNISSV 144 (251)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhC-eEEEECCc
Confidence 112223448999999987532 1 122 23456677765555554444332122 56666654
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.042 Score=50.96 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
...+|+|+| +|..|...+..+.. .+. .+|.++++++ ++++..+.++... ...+....+..+++++|
T Consensus 124 ~~~~v~iiG-~G~~a~~~~~al~~~~~~------~~V~V~~Rs~--~~a~~~a~~~~~~----g~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVG-TGRLASLLALAHASVRPI------KQVRVWGRDP--AKAEALAAELRAQ----GFDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEEC-CcHHHHHHHHHHHhcCCC------CEEEEEcCCH--HHHHHHHHHHHhc----CCceEEeCCHHHHHhcC
Confidence 357999999 69999999876654 443 2899999874 4555544444321 11355556778899999
Q ss_pred cEEEEeCC
Q 020875 83 NIAVMVGG 90 (320)
Q Consensus 83 DvVi~~ag 90 (320)
|+|+.+..
T Consensus 191 DIVi~aT~ 198 (314)
T PRK06141 191 DIISCATL 198 (314)
T ss_pred CEEEEeeC
Confidence 99976543
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.027 Score=47.67 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=28.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
||+|+| +|.+|+.++..|+..|. + ++.|+|.+
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gv-g-----~i~lvD~D 32 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGV-G-----NLKLVDFD 32 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCC-C-----eEEEEeCC
Confidence 689999 69999999999999986 2 79999975
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.044 Score=51.21 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=51.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
.++|+|+| +|..|.+.+..+.. .+. .+|.+++++. ++++....++.+. ....+....+..+++.++|
T Consensus 132 ~~~v~IiG-aG~~a~~~~~al~~~~~~------~~V~v~~R~~--~~a~~l~~~~~~~---~g~~v~~~~d~~~al~~aD 199 (330)
T PRK08291 132 ASRAAVIG-AGEQARLQLEALTLVRPI------REVRVWARDA--AKAEAYAADLRAE---LGIPVTVARDVHEAVAGAD 199 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCC------CEEEEEcCCH--HHHHHHHHHHhhc---cCceEEEeCCHHHHHccCC
Confidence 47999999 69999988877764 443 2899999874 5555554444321 1123455567889999999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+||.+..
T Consensus 200 iVi~aT~ 206 (330)
T PRK08291 200 IIVTTTP 206 (330)
T ss_pred EEEEeeC
Confidence 9988754
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.044 Score=49.92 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+..+++|+| +|.+|.+++..|...|.. +|.+++++. ++++....++.... .+....+..+.+.++|
T Consensus 122 ~~k~vlVlG-aGg~a~ai~~aL~~~g~~------~V~v~~R~~--~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 122 KGKRILILG-AGGAARAVILPLLDLGVA------EITIVNRTV--ERAEELAKLFGALG-----KAELDLELQEELADFD 187 (278)
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHHcCCC------EEEEEeCCH--HHHHHHHHHhhhcc-----ceeecccchhccccCC
Confidence 346899999 599999999999988852 899999864 44443333332111 1112113456778999
Q ss_pred EEEEeCCCCC
Q 020875 84 IAVMVGGFPR 93 (320)
Q Consensus 84 vVi~~ag~~~ 93 (320)
+||.+.....
T Consensus 188 ivInaTp~g~ 197 (278)
T PRK00258 188 LIINATSAGM 197 (278)
T ss_pred EEEECCcCCC
Confidence 9999865443
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.004 Score=55.09 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC------ChhhhcCCCcEEE
Q 020875 13 AAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT------DAVEACTGVNIAV 86 (320)
Q Consensus 13 A~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~------~~~~al~~aDvVi 86 (320)
++|++|++++..|+.+|+ +|++++++.. .. .... ....-+...+ ...+.+++.|+||
T Consensus 24 SSG~iG~aLA~~L~~~G~-------~V~li~r~~~---~~----~~~~---~~v~~i~v~s~~~m~~~l~~~~~~~DivI 86 (229)
T PRK06732 24 STGQLGKIIAETFLAAGH-------EVTLVTTKTA---VK----PEPH---PNLSIIEIENVDDLLETLEPLVKDHDVLI 86 (229)
T ss_pred cchHHHHHHHHHHHhCCC-------EEEEEECccc---cc----CCCC---CCeEEEEEecHHHHHHHHHHHhcCCCEEE
Confidence 489999999999999997 8998886421 00 0000 0000111111 2234567899999
Q ss_pred EeCCCCC
Q 020875 87 MVGGFPR 93 (320)
Q Consensus 87 ~~ag~~~ 93 (320)
|+|++..
T Consensus 87 h~AAvsd 93 (229)
T PRK06732 87 HSMAVSD 93 (229)
T ss_pred eCCccCC
Confidence 9999753
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.038 Score=51.27 Aligned_cols=73 Identities=26% Similarity=0.240 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
...+++|+| +|..+.+-+..+.. .++ .+|.++++++ ++++..+.++.+ ....+....+.++++++|
T Consensus 127 ~~~~l~viG-aG~QA~~~~~a~~~~~~i------~~v~v~~r~~--~~~~~~~~~~~~----~~~~v~~~~~~~~av~~a 193 (313)
T PF02423_consen 127 DARTLGVIG-AGVQARWHLRALAAVRPI------KEVRVYSRSP--ERAEAFAARLRD----LGVPVVAVDSAEEAVRGA 193 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS--------SEEEEE-SSH--HHHHHHHHHHHC----CCTCEEEESSHHHHHTTS
T ss_pred CCceEEEEC-CCHHHHHHHHHHHHhCCc------eEEEEEccCh--hHHHHHHHhhcc----ccccceeccchhhhcccC
Confidence 457999999 69999988876664 443 3899999974 556666666665 134677778899999999
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+|+.+.
T Consensus 194 Dii~taT 200 (313)
T PF02423_consen 194 DIIVTAT 200 (313)
T ss_dssp SEEEE--
T ss_pred CEEEEcc
Confidence 9988754
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.076 Score=50.35 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=41.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
.+||+|+|.+|.+|..++..|.+. ++ +|..+|+.. .. ..+..+.+++||
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~-------~V~g~D~~d--------------~~---------~~~~~~~v~~aD 53 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQL-------EVIGHDPAD--------------PG---------SLDPATLLQRAD 53 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCC-------EEEEEcCCc--------------cc---------cCCHHHHhcCCC
Confidence 469999996699999999999875 33 788888631 00 014567789999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 54 lVilav 59 (370)
T PRK08818 54 VLIFSA 59 (370)
T ss_pred EEEEeC
Confidence 999985
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.043 Score=50.07 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=74.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC--cceEEeC------Chhhhc
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATT------DAVEAC 79 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~------~~~~al 79 (320)
.+|+||+..||..++.+|+.+|+ .|+|+.|++ +|+...+-++.+...-.. ..++.+. .+.+.+
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~-------nvvLIsRt~--~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l 122 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGF-------NVVLISRTQ--EKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKL 122 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHh
Confidence 46889999999999999999998 899999974 788888888876542111 1111111 244556
Q ss_pred CCCc--EEEEeCCCCCCCCC-----CH---HHHHHhhH----HHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 80 TGVN--IAVMVGGFPRKEGM-----ER---KDVMSKNV----SIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 80 ~~aD--vVi~~ag~~~~~~~-----~r---~~~~~~n~----~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
.+-| +.|..+|....... +. .+.+..|. ..++-+.+.|.+. +.+.++++++..+.
T Consensus 123 ~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r--~~G~IvnigS~ag~ 191 (312)
T KOG1014|consen 123 AGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVER--KKGIIVNIGSFAGL 191 (312)
T ss_pred cCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcC--CCceEEEecccccc
Confidence 6555 56667776442111 11 12222332 3566677777774 35778888876554
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.09 Score=48.50 Aligned_cols=58 Identities=21% Similarity=0.148 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhH-HHHHHHhcccCCCCcceEEeCChhhhcCCCcEEEEeC
Q 020875 17 IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVG 89 (320)
Q Consensus 17 vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~-~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvVi~~a 89 (320)
=|+++|..|+..|+ +|.++|+++ +++. .....+.+. .....++..++.+++|+||.+.
T Consensus 31 gGspMArnLlkAGh-------eV~V~Drnr--sa~e~e~~e~Laea------GA~~AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 31 GGSRMAIEFAMAGH-------DVVLAEPNR--EFMSDDLWKKVEDA------GVKVVSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred CHHHHHHHHHHCCC-------EEEEEeCCh--hhhhhhhhHHHHHC------CCeecCCHHHHHhCCCEEEEec
Confidence 48899999999997 899999864 2221 112223322 1233446788999999999985
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.011 Score=52.32 Aligned_cols=75 Identities=11% Similarity=0.141 Sum_probs=46.6
Q ss_pred EEE-EEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH----HHHhcc--cCCCCcceEEeCChhhhc
Q 020875 7 RVL-VTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK----MELVDA--AFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 7 kI~-IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~----~dl~~~--~~~~~~~v~~~~~~~~al 79 (320)
|++ |+||+|.||+.+...|..+.++ ++.++.-+. +..|+. ..+.+. .....+++++..-..+.|
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f------~ikvLgAS~---RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F 75 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYF------SIKVLGASK---RSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSF 75 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcc------eeeeecccc---cccCCceEecccchhcccccchhhhhhHhhcChhhc
Confidence 677 9999999999999999888775 677665431 112211 111111 111123444444456779
Q ss_pred CCCcEEEEeCC
Q 020875 80 TGVNIAVMVGG 90 (320)
Q Consensus 80 ~~aDvVi~~ag 90 (320)
.+||+|+...+
T Consensus 76 ~ecDIvfsgld 86 (361)
T KOG4777|consen 76 NECDIVFSGLD 86 (361)
T ss_pred ccccEEEecCC
Confidence 99999998654
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.049 Score=50.30 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
...+++|+| +|..|...+..+.. .+. .+|.+++++. ++++..+..+.... ..+. ..+..+++.++
T Consensus 124 ~~~~v~IiG-aG~qa~~~~~al~~~~~~------~~v~v~~r~~--~~a~~~a~~~~~~~----~~~~-~~~~~~av~~a 189 (304)
T PRK07340 124 PPGDLLLIG-TGVQARAHLEAFAAGLPV------RRVWVRGRTA--ASAAAFCAHARALG----PTAE-PLDGEAIPEAV 189 (304)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhCCC------CEEEEEcCCH--HHHHHHHHHHHhcC----CeeE-ECCHHHHhhcC
Confidence 357999999 69999999988865 443 2899999974 55555554443211 1222 35678899999
Q ss_pred cEEEEeCC
Q 020875 83 NIAVMVGG 90 (320)
Q Consensus 83 DvVi~~ag 90 (320)
|+||.+..
T Consensus 190 DiVitaT~ 197 (304)
T PRK07340 190 DLVVTATT 197 (304)
T ss_pred CEEEEccC
Confidence 99998754
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0091 Score=53.79 Aligned_cols=112 Identities=14% Similarity=0.022 Sum_probs=70.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEE-EecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHM-LDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l-~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
-..|.||+||+|..++..|...|- .+.+ |.-++..-+-.-...||.+.. +...+.....+..++.+.+++|
T Consensus 63 VaTVFGAtGFlGryvvnklak~GS-------QviiPyR~d~~~~r~lkvmGdLGQvl-~~~fd~~DedSIr~vvk~sNVV 134 (391)
T KOG2865|consen 63 VATVFGATGFLGRYVVNKLAKMGS-------QVIIPYRGDEYDPRHLKVMGDLGQVL-FMKFDLRDEDSIRAVVKHSNVV 134 (391)
T ss_pred EEEEecccccccHHHHHHHhhcCC-------eEEEeccCCccchhheeeccccccee-eeccCCCCHHHHHHHHHhCcEE
Confidence 356889999999999999998875 3332 222211000001123333221 2223455555788899999999
Q ss_pred EEeCCCCCCCCCCH-HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 86 VMVGGFPRKEGMER-KDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 86 i~~ag~~~~~~~~r-~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
|.+.|.- .+++ .++-+.|..+.+.+++.+++.+ - -++|-+|
T Consensus 135 INLIGrd---~eTknf~f~Dvn~~~aerlAricke~G-V-erfIhvS 176 (391)
T KOG2865|consen 135 INLIGRD---YETKNFSFEDVNVHIAERLARICKEAG-V-ERFIHVS 176 (391)
T ss_pred EEeeccc---cccCCcccccccchHHHHHHHHHHhhC-h-hheeehh
Confidence 9998742 1222 2456789999999999999886 2 2566655
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.042 Score=45.78 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=42.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+.++|+|+|.+..||..++..|.+++. .|.+.+... .++.+.++.||
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~a-------tVt~~h~~T--------------------------~~l~~~~~~AD 81 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKGA-------TVTICHSKT--------------------------KNLQEITRRAD 81 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT--------EEEEE-TTS--------------------------SSHHHHHTTSS
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCCC-------eEEeccCCC--------------------------Ccccceeeecc
Confidence 357999999988999999999999875 787777531 14567789999
Q ss_pred EEEEeCCCCC
Q 020875 84 IAVMVGGFPR 93 (320)
Q Consensus 84 vVi~~ag~~~ 93 (320)
+||.++|.|.
T Consensus 82 IVVsa~G~~~ 91 (160)
T PF02882_consen 82 IVVSAVGKPN 91 (160)
T ss_dssp EEEE-SSSTT
T ss_pred EEeeeecccc
Confidence 9999998653
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.022 Score=52.50 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=46.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+| ||+|.||..+...|-++++- ..+++|+.... +..|....+. ...+.+..-..++++++|+
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fp----v~~l~l~~s~~---~s~gk~i~f~------g~~~~V~~l~~~~f~~vDi 68 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLE----IEQISIVEIEP---FGEEQGIRFN------NKAVEQIAPEEVEWADFNY 68 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCc----hhheeeccccc---ccCCCEEEEC------CEEEEEEECCccCcccCCE
Confidence 579999 99999999999988888752 23788887641 1122222221 2234443333457899999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
+|+ +|
T Consensus 69 a~f-ag 73 (322)
T PRK06901 69 VFF-AG 73 (322)
T ss_pred EEE-cC
Confidence 999 65
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.59 Score=43.02 Aligned_cols=36 Identities=33% Similarity=0.499 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEE-EEEecCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPP 46 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev-~l~D~~~ 46 (320)
+++||+|+| +|++|..++..+.....+ ++ .++|+++
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~~v------elvAVvdid~ 39 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSEHL------EPGAMVGIDP 39 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCCCc------EEEEEEeCCh
Confidence 568999999 899999988777754322 54 4788864
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.031 Score=48.34 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=30.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.++|+|+| .|.+|++++..|.+.|. +|+++|+++
T Consensus 28 gk~v~I~G-~G~vG~~~A~~L~~~G~-------~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQG-LGKVGYKLAEHLLEEGA-------KLIVADINE 61 (200)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEcCCH
Confidence 47999999 69999999999999887 899999863
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.053 Score=52.46 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
...+|+|+| +|.+|..++..|...|.. +|.+++++. +++...+.++. ..+....+..+++.++|
T Consensus 181 ~~~~vlViG-aG~iG~~~a~~L~~~G~~------~V~v~~r~~--~ra~~la~~~g-------~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIG-AGEMGELVAKHLAEKGVR------KITVANRTL--ERAEELAEEFG-------GEAIPLDELPEALAEAD 244 (423)
T ss_pred cCCEEEEEC-chHHHHHHHHHHHHCCCC------eEEEEeCCH--HHHHHHHHHcC-------CcEeeHHHHHHHhccCC
Confidence 457999999 599999999999877752 788999863 33332222221 11222235567788999
Q ss_pred EEEEeCCCC
Q 020875 84 IAVMVGGFP 92 (320)
Q Consensus 84 vVi~~ag~~ 92 (320)
+||.+.+.+
T Consensus 245 vVI~aT~s~ 253 (423)
T PRK00045 245 IVISSTGAP 253 (423)
T ss_pred EEEECCCCC
Confidence 999987654
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.059 Score=49.70 Aligned_cols=76 Identities=7% Similarity=-0.010 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
...+++|+| +|..|.+.+..+..-.-+ .+|.+++++. ++++..+.++.+. ...++....+..+++++||
T Consensus 116 da~~l~iiG-aG~QA~~~~~a~~~v~~i-----~~v~v~~r~~--~~a~~f~~~~~~~---~~~~v~~~~~~~eav~~aD 184 (301)
T PRK06407 116 NVENFTIIG-SGFQAETQLEGMASVYNP-----KRIRVYSRNF--DHARAFAERFSKE---FGVDIRPVDNAEAALRDAD 184 (301)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhcCCC-----CEEEEECCCH--HHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcCC
Confidence 457999999 699999887766653222 3899999974 5555555555432 1235666678899999999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+|+.+..
T Consensus 185 IV~taT~ 191 (301)
T PRK06407 185 TITSITN 191 (301)
T ss_pred EEEEecC
Confidence 9997643
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.033 Score=52.94 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=44.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||+.++..|..-|. +|..+|.... + .+ +.. ...++.+.++.||+
T Consensus 116 gktvGIIG-~G~IG~~vA~~l~a~G~-------~V~~~dp~~~-~--~~------~~~--------~~~~L~ell~~sDi 170 (378)
T PRK15438 116 DRTVGIVG-VGNVGRRLQARLEALGI-------KTLLCDPPRA-D--RG------DEG--------DFRSLDELVQEADI 170 (378)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-------EEEEECCccc-c--cc------ccc--------ccCCHHHHHhhCCE
Confidence 47999999 79999999999988776 8999996421 0 00 000 01267888899999
Q ss_pred EEEeCCC
Q 020875 85 AVMVGGF 91 (320)
Q Consensus 85 Vi~~ag~ 91 (320)
|++..-.
T Consensus 171 I~lh~PL 177 (378)
T PRK15438 171 LTFHTPL 177 (378)
T ss_pred EEEeCCC
Confidence 9986543
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.06 Score=50.21 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=50.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
..+++|+| +|..|...+..++. .+. .+|.++|+++ ++++.....+.+. ....+....+..++++++|
T Consensus 127 ~~~v~iiG-aG~~a~~~~~al~~~~~~------~~v~v~~r~~--~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~aD 194 (325)
T PRK08618 127 AKTLCLIG-TGGQAKGQLEAVLAVRDI------ERVRVYSRTF--EKAYAFAQEIQSK---FNTEIYVVNSADEAIEEAD 194 (325)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhcCCc------cEEEEECCCH--HHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcCC
Confidence 46899999 69999887766653 343 3899999874 4555444444321 1123444567788999999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+||.+..
T Consensus 195 iVi~aT~ 201 (325)
T PRK08618 195 IIVTVTN 201 (325)
T ss_pred EEEEccC
Confidence 9998754
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.031 Score=48.41 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+..||+|+| +|.+|+.++..|+..|. + ++.++|.+
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv-~-----~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGV-G-----TIVIVDDD 54 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEecCC
Confidence 356999999 69999999999999986 2 79999975
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.039 Score=51.72 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=30.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
..||+|+| +|.+|++++..|+..|+ + ++.++|.+
T Consensus 24 ~~~VlIiG-~GglGs~va~~La~aGv-g-----~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVG-AGALGAANAEALVRAGI-G-----KLTIADRD 57 (338)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCC-C-----EEEEEcCC
Confidence 46999999 69999999999999986 2 79999975
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.039 Score=51.74 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=30.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
..||+|+| +|.+|+.++..|+..|. + ++.++|.+
T Consensus 24 ~~~VlVvG-~GglGs~va~~La~aGv-g-----~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIG-AGALGTANAEMLVRAGV-G-----KVTIVDRD 57 (339)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEEeCC
Confidence 46999999 59999999999999986 3 89999975
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.036 Score=50.89 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
..++|+|+|.+|.+|.+++..|.+.|. +|.++++.. . ++.+..+.||
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga-------tVtv~~~~t--~------------------------~l~e~~~~AD 204 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHC-------SVTVVHSRS--T------------------------DAKALCRQAD 204 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEECCCC--C------------------------CHHHHHhcCC
Confidence 357999999767999999999999886 899998642 0 3567788999
Q ss_pred EEEEeCCCC
Q 020875 84 IAVMVGGFP 92 (320)
Q Consensus 84 vVi~~ag~~ 92 (320)
+||.+.|.+
T Consensus 205 IVIsavg~~ 213 (301)
T PRK14194 205 IVVAAVGRP 213 (301)
T ss_pred EEEEecCCh
Confidence 999998765
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.076 Score=58.60 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=50.5
Q ss_pred CCCCC-CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc
Q 020875 1 MAKEP-VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~~-~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al 79 (320)
|+.++ +||+++| .|.+|.+++..|+..|+ +|..+|+++ +++. .+.+.. .....+..+++
T Consensus 319 ~~~~~~~~IGfIG-lG~MG~~mA~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~G------a~~~~s~~e~~ 378 (1378)
T PLN02858 319 MQAKPVKRIGFIG-LGAMGFGMASHLLKSNF-------SVCGYDVYK--PTLV----RFENAG------GLAGNSPAEVA 378 (1378)
T ss_pred ccccCCCeEEEEC-chHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH----HHHHcC------CeecCCHHHHH
Confidence 55544 7999999 79999999999999887 899999864 3322 222211 11234567888
Q ss_pred CCCcEEEEeCC
Q 020875 80 TGVNIAVMVGG 90 (320)
Q Consensus 80 ~~aDvVi~~ag 90 (320)
+++|+||++..
T Consensus 379 ~~aDvVi~~V~ 389 (1378)
T PLN02858 379 KDVDVLVIMVA 389 (1378)
T ss_pred hcCCEEEEecC
Confidence 99999999864
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.06 Score=51.34 Aligned_cols=65 Identities=20% Similarity=0.131 Sum_probs=45.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||+.++..|..-|. +|..+|+.... .+ ...+ . .+....++.+.+++||+
T Consensus 199 gktVGIVG-~G~IG~~vA~~L~afG~-------~V~~~d~~~~~--~~-~~~~---~------g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 199 GKTVGTVG-AGRIGRLLLQRLKPFNC-------NLLYHDRLKMD--PE-LEKE---T------GAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCC-------EEEEECCCCcc--hh-hHhh---c------CceecCCHHHHHhhCCE
Confidence 47999999 79999999999987675 78899975311 11 0000 0 11222368888999999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
|++..
T Consensus 259 V~l~l 263 (386)
T PLN03139 259 VVINT 263 (386)
T ss_pred EEEeC
Confidence 99975
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.07 Score=49.12 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
...|++|+| .|.+|..++..|...|. +|.++|++. ++. ....++ . .+.....++.+.++++|
T Consensus 151 ~g~kvlViG-~G~iG~~~a~~L~~~Ga-------~V~v~~r~~--~~~-~~~~~~---G----~~~~~~~~l~~~l~~aD 212 (296)
T PRK08306 151 HGSNVLVLG-FGRTGMTLARTLKALGA-------NVTVGARKS--AHL-ARITEM---G----LSPFHLSELAEEVGKID 212 (296)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCC-------EEEEEECCH--HHH-HHHHHc---C----CeeecHHHHHHHhCCCC
Confidence 357999999 69999999999998775 899999873 211 111111 1 01111135667789999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||.+.
T Consensus 213 iVI~t~ 218 (296)
T PRK08306 213 IIFNTI 218 (296)
T ss_pred EEEECC
Confidence 999985
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.084 Score=49.01 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
...+++|+| +|..+.+.+..+..-.-+ .+|.+++++. ++++..+..+.+. ..++....+..+++++||
T Consensus 127 d~~~l~iiG-~G~qA~~~~~a~~~v~~i-----~~v~v~~r~~--~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 194 (315)
T PRK06823 127 HVSAIGIVG-TGIQARMQLMYLKNVTDC-----RQLWVWGRSE--TALEEYRQYAQAL----GFAVNTTLDAAEVAHAAN 194 (315)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhcCCC-----CEEEEECCCH--HHHHHHHHHHHhc----CCcEEEECCHHHHhcCCC
Confidence 457999999 799998888776653222 3899999974 4555444333321 235666678889999999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+|+.+..
T Consensus 195 IV~taT~ 201 (315)
T PRK06823 195 LIVTTTP 201 (315)
T ss_pred EEEEecC
Confidence 9997653
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.036 Score=50.39 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=51.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+-|| .|.+|++++..|+..|+ .|+.||+.. + ...+|.+.. -++..+..+..+++|+
T Consensus 35 ~~~iGFIG-LG~MG~~M~~nLik~G~-------kVtV~dr~~--~----k~~~f~~~G------a~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 35 KTRIGFIG-LGNMGSAMVSNLIKAGY-------KVTVYDRTK--D----KCKEFQEAG------ARVANSPAEVAEDSDV 94 (327)
T ss_pred cceeeEEe-eccchHHHHHHHHHcCC-------EEEEEeCcH--H----HHHHHHHhc------hhhhCCHHHHHhhcCE
Confidence 47999999 89999999999999998 899999863 2 233454432 1222356788899999
Q ss_pred EEEeCCCC
Q 020875 85 AVMVGGFP 92 (320)
Q Consensus 85 Vi~~ag~~ 92 (320)
||...+.|
T Consensus 95 vitmv~~~ 102 (327)
T KOG0409|consen 95 VITMVPNP 102 (327)
T ss_pred EEEEcCCh
Confidence 99986644
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.076 Score=49.54 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=52.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
..+++|+| +|..|...+..|.. .++ .+|.+++++. ++++..+.++.+. ...++....+..+++.++|
T Consensus 129 ~~~v~iiG-aG~qA~~~~~al~~~~~i------~~v~V~~R~~--~~a~~~a~~~~~~---~g~~v~~~~~~~~av~~aD 196 (326)
T TIGR02992 129 SSVVAIFG-AGMQARLQLEALTLVRDI------RSARIWARDS--AKAEALALQLSSL---LGIDVTAATDPRAAMSGAD 196 (326)
T ss_pred CcEEEEEC-CCHHHHHHHHHHHHhCCc------cEEEEECCCH--HHHHHHHHHHHhh---cCceEEEeCCHHHHhccCC
Confidence 46899999 69999988888863 453 2799999874 5555555444321 1124455567888999999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+|+.+..
T Consensus 197 iVvtaT~ 203 (326)
T TIGR02992 197 IIVTTTP 203 (326)
T ss_pred EEEEecC
Confidence 9998754
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.065 Score=50.39 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
...+++|+| +|..+.+.+..++. ..+ .+|.++++++ ++++....++.+. ..++....+.++++++|
T Consensus 128 da~~l~iiG-aG~QA~~~l~a~~~vr~i------~~V~v~~r~~--~~a~~~~~~~~~~----~~~v~~~~~~~~av~~A 194 (346)
T PRK07589 128 DSRTMALIG-NGAQSEFQALAFKALLGI------EEIRLYDIDP--AATAKLARNLAGP----GLRIVACRSVAEAVEGA 194 (346)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHhCCc------eEEEEEeCCH--HHHHHHHHHHHhc----CCcEEEeCCHHHHHhcC
Confidence 357899999 69999887766654 333 3899999974 5555555555431 12466667899999999
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+|+.+.
T Consensus 195 DIIvtaT 201 (346)
T PRK07589 195 DIITTVT 201 (346)
T ss_pred CEEEEec
Confidence 9999865
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.025 Score=48.79 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=23.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVM 30 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~ 30 (320)
|||+|+||+|.+|+.++..+.+.|+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~ 25 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL 25 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC
Confidence 6999999999999999999998887
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.033 Score=47.73 Aligned_cols=77 Identities=9% Similarity=0.103 Sum_probs=49.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+|.+.-||.+++..|++++. .|.+.|++....+..+. .+.|...+. -....++.+.++.||+
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~A-------tVti~~~~~~~~~~~~~--~~~hs~t~~---~~~~~~l~~~~~~ADI 129 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGA-------RVYSVDINGIQVFTRGE--SIRHEKHHV---TDEEAMTLDCLSQSDV 129 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCC-------EEEEEecCccccccccc--ccccccccc---cchhhHHHHHhhhCCE
Confidence 47999999999999999999998875 89999875311111110 111111000 0001126678899999
Q ss_pred EEEeCCCCC
Q 020875 85 AVMVGGFPR 93 (320)
Q Consensus 85 Vi~~ag~~~ 93 (320)
||.++|.+.
T Consensus 130 VIsAvG~~~ 138 (197)
T cd01079 130 VITGVPSPN 138 (197)
T ss_pred EEEccCCCC
Confidence 999998664
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.048 Score=51.38 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=59.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~aD 83 (320)
.++|+|+| .|.||+.++..|..-|. +|..+|+....+ ......+..... ..........++.+.++.||
T Consensus 159 gktvGIiG-~G~IG~~vA~~l~afG~-------~V~~~dr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aD 228 (347)
T PLN02928 159 GKTVFILG-YGAIGIELAKRLRPFGV-------KLLATRRSWTSE--PEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEAD 228 (347)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhhCCC-------EEEEECCCCChh--hhhhhccccccccccccccCcccCHHHHHhhCC
Confidence 46999999 79999999999988776 899999853111 100000000000 00000011247889999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+|++...... .++ .++ | .+.+.+.. |++++|+++-
T Consensus 229 iVvl~lPlt~---~T~-~li--~-------~~~l~~Mk-~ga~lINvaR 263 (347)
T PLN02928 229 IVVLCCTLTK---ETA-GIV--N-------DEFLSSMK-KGALLVNIAR 263 (347)
T ss_pred EEEECCCCCh---Hhh-ccc--C-------HHHHhcCC-CCeEEEECCC
Confidence 9999864321 111 111 1 23333333 6788999873
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.078 Score=48.02 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=47.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++++|+|+ |.+|.+++..|+..|. +|.+++++. ++++....++.... .+.........+.++|+
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g~-------~v~v~~R~~--~~~~~la~~~~~~~-----~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKADC-------NVIIANRTV--SKAEELAERFQRYG-----EIQAFSMDELPLHRVDL 181 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhhcC-----ceEEechhhhcccCccE
Confidence 468999994 9999999999998775 788999863 44443333332211 11111111233468999
Q ss_pred EEEeCCCC
Q 020875 85 AVMVGGFP 92 (320)
Q Consensus 85 Vi~~ag~~ 92 (320)
||.+.+..
T Consensus 182 vInatp~g 189 (270)
T TIGR00507 182 IINATSAG 189 (270)
T ss_pred EEECCCCC
Confidence 99987654
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.009 Score=53.83 Aligned_cols=121 Identities=9% Similarity=-0.010 Sum_probs=75.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH-HHHHHhcccCC----CCcceEEeCChhhhcC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG-VKMELVDAAFP----LLKGVVATTDAVEACT 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~-~~~dl~~~~~~----~~~~v~~~~~~~~al~ 80 (320)
+.-+|||-+|+.|+-|+..|++.|+ +|+-+.++.+.-.... ....+-+...+ ...+++..+++..+++
T Consensus 3 K~ALITGITGQDGsYLa~lLLekGY-------~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~ 75 (345)
T COG1089 3 KVALITGITGQDGSYLAELLLEKGY-------EVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILE 75 (345)
T ss_pred ceEEEecccCCchHHHHHHHHhcCc-------EEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHH
Confidence 3567899999999999999999998 8886665421111110 00011111111 1245555556666665
Q ss_pred --CCcEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 81 --GVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 81 --~aDvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
..|-|.++|+.... +-+++......+.-.+..++++|+..+++++++--+|.+
T Consensus 76 ~v~PdEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStS 132 (345)
T COG1089 76 EVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTS 132 (345)
T ss_pred hcCchhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccH
Confidence 56899999875432 223333445667788899999999998447777666643
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.04 Score=52.48 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=45.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||+.++..|..-|+ +|.++|.... ... .. .. ..++.+.+++||+
T Consensus 116 gktvGIIG-~G~IG~~va~~l~a~G~-------~V~~~Dp~~~--~~~-------~~-------~~-~~~l~ell~~aDi 170 (381)
T PRK00257 116 ERTYGVVG-AGHVGGRLVRVLRGLGW-------KVLVCDPPRQ--EAE-------GD-------GD-FVSLERILEECDV 170 (381)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEECCccc--ccc-------cC-------cc-ccCHHHHHhhCCE
Confidence 46999999 79999999999998786 8999997421 110 00 00 1257788899999
Q ss_pred EEEeCCC
Q 020875 85 AVMVGGF 91 (320)
Q Consensus 85 Vi~~ag~ 91 (320)
|++....
T Consensus 171 V~lh~Pl 177 (381)
T PRK00257 171 ISLHTPL 177 (381)
T ss_pred EEEeCcC
Confidence 9987643
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.1 Score=46.89 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=54.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-cCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-CTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-l~~a 82 (320)
.+||+|+| +|.+|+.++..|...... ..++. ++|+.. ++.+ .+.+. +...+++.+. ....
T Consensus 2 ~~rvgiIG-~GaIG~~va~~l~~~~~~----~~~l~~V~~~~~--~~~~----~~~~~-------~~~~~~l~~ll~~~~ 63 (267)
T PRK13301 2 THRIAFIG-LGAIASDVAAGLLADAAQ----PCQLAALTRNAA--DLPP----ALAGR-------VALLDGLPGLLAWRP 63 (267)
T ss_pred ceEEEEEC-ccHHHHHHHHHHhcCCCC----ceEEEEEecCCH--HHHH----Hhhcc-------CcccCCHHHHhhcCC
Confidence 36999999 799999999988765321 12444 455542 2222 22221 1223355553 3789
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeE
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~ 126 (320)
|+|+-+|+. ..++++++.+-+.+ .+..
T Consensus 64 DlVVE~A~~----------------~av~e~~~~iL~~g-~dlv 90 (267)
T PRK13301 64 DLVVEAAGQ----------------QAIAEHAEGCLTAG-LDMI 90 (267)
T ss_pred CEEEECCCH----------------HHHHHHHHHHHhcC-CCEE
Confidence 999999862 46788888888776 5543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.054 Score=52.73 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=57.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||..++..|...|. +|.++|+++. +.. .+.. +.. .. .++.++++.+|+
T Consensus 254 GKtVgVIG-~G~IGr~vA~rL~a~Ga-------~ViV~e~dp~--~a~-~A~~--~G~-------~~-~~leell~~ADI 312 (476)
T PTZ00075 254 GKTVVVCG-YGDVGKGCAQALRGFGA-------RVVVTEIDPI--CAL-QAAM--EGY-------QV-VTLEDVVETADI 312 (476)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCch--hHH-HHHh--cCc-------ee-ccHHHHHhcCCE
Confidence 46999999 69999999999998776 7888987642 211 1111 111 11 246788999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
||.+.|.+. + +. .+.+.... |++++++++-.
T Consensus 313 VI~atGt~~--------i-------I~--~e~~~~MK-pGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNKD--------I-------IT--LEHMRRMK-NNAIVGNIGHF 343 (476)
T ss_pred EEECCCccc--------c-------cC--HHHHhccC-CCcEEEEcCCC
Confidence 999865321 0 10 12333333 67889988854
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.045 Score=54.45 Aligned_cols=65 Identities=20% Similarity=0.099 Sum_probs=46.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.+|+.++..|...|+ +|..+|+....+ ...++ .+....++.+.+++||+
T Consensus 138 gktvgIiG-~G~IG~~vA~~l~~fG~-------~V~~~d~~~~~~----~~~~~---------g~~~~~~l~ell~~aDv 196 (525)
T TIGR01327 138 GKTLGVIG-LGRIGSIVAKRAKAFGM-------KVLAYDPYISPE----RAEQL---------GVELVDDLDELLARADF 196 (525)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEECCCCChh----HHHhc---------CCEEcCCHHHHHhhCCE
Confidence 36999999 79999999999988776 899999742111 11111 11222368888999999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
|++...
T Consensus 197 V~l~lP 202 (525)
T TIGR01327 197 ITVHTP 202 (525)
T ss_pred EEEccC
Confidence 999764
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.044 Score=50.06 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+..+|+|+|++|.+|.+++..|++.+. +|.++++.. . ++.+.++++|
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~ga-------tVtv~~~~t---------~-----------------~L~~~~~~aD 204 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANA-------TVTICHSRT---------Q-----------------NLPELVKQAD 204 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC-------EEEEEeCCc---------h-----------------hHHHHhccCC
Confidence 346999999766799999999998875 788888521 0 2445568999
Q ss_pred EEEEeCCCC
Q 020875 84 IAVMVGGFP 92 (320)
Q Consensus 84 vVi~~ag~~ 92 (320)
+||.+.|.+
T Consensus 205 IvI~AtG~~ 213 (283)
T PRK14192 205 IIVGAVGKP 213 (283)
T ss_pred EEEEccCCC
Confidence 999998743
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.033 Score=51.70 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=43.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.+||+|+| .|.+|.+++..|...|+ ++++.+.... +... . +... .+.. .+..+++++||+
T Consensus 3 ~kkIgiIG-~G~mG~AiA~~L~~sG~-------~Viv~~~~~~-~~~~-~---a~~~------Gv~~-~s~~ea~~~ADi 62 (314)
T TIGR00465 3 GKTVAIIG-YGSQGHAQALNLRDSGL-------NVIVGLRKGG-ASWK-K---ATED------GFKV-GTVEEAIPQADL 62 (314)
T ss_pred cCEEEEEe-EcHHHHHHHHHHHHCCC-------eEEEEECcCh-hhHH-H---HHHC------CCEE-CCHHHHHhcCCE
Confidence 46999999 69999999999999886 5665554321 1111 1 1111 1122 246778899999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
|+++.
T Consensus 63 VvLaV 67 (314)
T TIGR00465 63 IMNLL 67 (314)
T ss_pred EEEeC
Confidence 99986
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.18 Score=52.33 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=46.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
.||+|+| .|.+|..++..|...|+. .+|..+|+++ ++++. ..+. .. .....++..++++++|+|
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~-----~~V~~~d~~~--~~~~~-a~~~--g~-----~~~~~~~~~~~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLA-----REVVAVDRRA--KSLEL-AVSL--GV-----IDRGEEDLAEAVSGADVI 67 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCC-----CEEEEEECCh--hHHHH-HHHC--CC-----CCcccCCHHHHhcCCCEE
Confidence 6899999 699999999999988742 1689999874 22221 1111 10 001223566778999999
Q ss_pred EEeCC
Q 020875 86 VMVGG 90 (320)
Q Consensus 86 i~~ag 90 (320)
|++..
T Consensus 68 ilavp 72 (735)
T PRK14806 68 VLAVP 72 (735)
T ss_pred EECCC
Confidence 99753
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.042 Score=52.93 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
...||+|+| +|.+|..++..|...|.. ++.+++++. ++++..+..+.. ..+....++.+.+.++|
T Consensus 180 ~~kkvlviG-aG~~a~~va~~L~~~g~~------~I~V~nRt~--~ra~~La~~~~~------~~~~~~~~l~~~l~~aD 244 (414)
T PRK13940 180 SSKNVLIIG-AGQTGELLFRHVTALAPK------QIMLANRTI--EKAQKITSAFRN------ASAHYLSELPQLIKKAD 244 (414)
T ss_pred cCCEEEEEc-CcHHHHHHHHHHHHcCCC------EEEEECCCH--HHHHHHHHHhcC------CeEecHHHHHHHhccCC
Confidence 346999999 599999999999988862 789999863 344333332211 11222235678899999
Q ss_pred EEEEeCCCCC
Q 020875 84 IAVMVGGFPR 93 (320)
Q Consensus 84 vVi~~ag~~~ 93 (320)
+||.+.+.|.
T Consensus 245 iVI~aT~a~~ 254 (414)
T PRK13940 245 IIIAAVNVLE 254 (414)
T ss_pred EEEECcCCCC
Confidence 9999887654
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.19 Score=47.20 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHH-HhcccCCCCcceEEeCChhhhcCCCcEEEEeC
Q 020875 17 IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-LVDAAFPLLKGVVATTDAVEACTGVNIAVMVG 89 (320)
Q Consensus 17 vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~d-l~~~~~~~~~~v~~~~~~~~al~~aDvVi~~a 89 (320)
=|..++..|+..|+ +|.++|+++ +.+.....+ +.+ ..+...++..++++++|+||++.
T Consensus 31 gG~~MA~~La~aG~-------~V~v~Dr~~--~~l~~~~~~~l~~------~Gi~~asd~~eaa~~ADvVIlaV 89 (342)
T PRK12557 31 GGSRMAIEFAEAGH-------DVVLAEPNR--SILSEELWKKVED------AGVKVVSDDAEAAKHGEIHILFT 89 (342)
T ss_pred CHHHHHHHHHhCCC-------eEEEEECCH--HHhhHHHHHHHHH------CCCEEeCCHHHHHhCCCEEEEEC
Confidence 37888999998887 899999864 222111111 211 12445557778889999999984
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.041 Score=46.24 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCh-hHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQ-IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~-vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
+..||+|+|+ |. +|..++..|...|. .+.+.+++. .++.+.+++|
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~-------~V~v~~r~~--------------------------~~l~~~l~~a 88 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNA-------TVTVCHSKT--------------------------KNLKEHTKQA 88 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCC-------EEEEEECCc--------------------------hhHHHHHhhC
Confidence 3479999995 75 69989999998875 688888641 1456788999
Q ss_pred cEEEEeCCCC
Q 020875 83 NIAVMVGGFP 92 (320)
Q Consensus 83 DvVi~~ag~~ 92 (320)
|+||.+.+.+
T Consensus 89 DiVIsat~~~ 98 (168)
T cd01080 89 DIVIVAVGKP 98 (168)
T ss_pred CEEEEcCCCC
Confidence 9999987755
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.1 Score=50.17 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
..+|+|+| .|.+|..++..+...|. +|+++|+++ .++. .+..+ .. .. ....++++++|+
T Consensus 202 GktVvViG-~G~IG~~va~~ak~~Ga-------~ViV~d~d~--~R~~-~A~~~--G~-------~~-~~~~e~v~~aDV 260 (413)
T cd00401 202 GKVAVVAG-YGDVGKGCAQSLRGQGA-------RVIVTEVDP--ICAL-QAAME--GY-------EV-MTMEEAVKEGDI 260 (413)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEECCh--hhHH-HHHhc--CC-------EE-ccHHHHHcCCCE
Confidence 46999999 69999999999988886 788899864 2222 12111 11 11 134577889999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
||.+.|
T Consensus 261 VI~atG 266 (413)
T cd00401 261 FVTTTG 266 (413)
T ss_pred EEECCC
Confidence 998866
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.033 Score=48.59 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=66.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc--chhHHHHHHHhccc--CCC---------CcceEE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAA--FPL---------LKGVVA 71 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~--~~~~~~~~dl~~~~--~~~---------~~~v~~ 71 (320)
.-||+|+| +|-+|+..+...+..|+ +|.|||+.+.. ..++...-|+.+.. ..+ ..-+..
T Consensus 3 ~~ki~ivg-Sgl~g~~WAmlFAs~Gy-------qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~ 74 (313)
T KOG2305|consen 3 FGKIAIVG-SGLVGSSWAMLFASSGY-------QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISG 74 (313)
T ss_pred ccceeEee-cccccchHHHHHhccCc-------eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhC
Confidence 34999999 89999999999999998 89999997521 11122222332211 011 123455
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
++++.+..++|=.|=-+ .-..+..-+.+.+++.....| ..|+.|+....+...
T Consensus 75 t~~l~E~vk~Ai~iQEc--------------vpE~L~lkk~ly~qlD~i~d~--~tIlaSSTSt~mpS~ 127 (313)
T KOG2305|consen 75 TTSLNELVKGAIHIQEC--------------VPEDLNLKKQLYKQLDEIADP--TTILASSTSTFMPSK 127 (313)
T ss_pred CccHHHHHhhhhhHHhh--------------chHhhHHHHHHHHHHHHhcCC--ceEEeccccccChHH
Confidence 66777777776322111 112233446677777776634 456677666555443
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.082 Score=52.41 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=49.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
..||+|+| +|.+|..++..|...|.. +|.+++++. +++......+.... ..+....+..+++.++|+
T Consensus 266 ~kkVlVIG-AG~mG~~~a~~L~~~G~~------~V~V~nRs~--era~~La~~~~g~~----i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 266 SARVLVIG-AGKMGKLLVKHLVSKGCT------KMVVVNRSE--ERVAALREEFPDVE----IIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCEEEEEe-CHHHHHHHHHHHHhCCCC------eEEEEeCCH--HHHHHHHHHhCCCc----eEeecHhhHHHHHhcCCE
Confidence 57999999 599999999999888752 799999864 44433332221100 011122356788899999
Q ss_pred EEEeCCCC
Q 020875 85 AVMVGGFP 92 (320)
Q Consensus 85 Vi~~ag~~ 92 (320)
||.+.+.+
T Consensus 333 VIsAT~s~ 340 (519)
T PLN00203 333 VFTSTSSE 340 (519)
T ss_pred EEEccCCC
Confidence 99876543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 320 | ||||
| 4mdh_A | 334 | Refined Crystal Structure Of Cytoplasmic Malate Deh | 1e-100 | ||
| 5mdh_A | 333 | Crystal Structure Of Ternary Complex Of Porcine Cyt | 1e-100 | ||
| 4h7p_A | 345 | Crystal Structure Of A Putative Cytosolic Malate De | 2e-87 | ||
| 1iz9_A | 327 | Crystal Structure Of Malate Dehydrogenase From Ther | 2e-83 | ||
| 1bmd_A | 327 | Determinants Of Protein Thermostability Observed In | 3e-83 | ||
| 1b8p_A | 329 | Malate Dehydrogenase From Aquaspirillum Arcticum Le | 5e-83 | ||
| 1bdm_A | 327 | The Structure At 1.8 Angstroms Resolution Of A Sing | 8e-83 | ||
| 3d5t_A | 331 | Crystal Structure Of Malate Dehydrogenase From Burk | 3e-81 | ||
| 1wze_A | 327 | Structural Basis For Alteration Of Cofactor Specifi | 6e-81 | ||
| 7mdh_A | 375 | Structural Basis For Light Acitvation Of A Chloropl | 6e-58 | ||
| 1civ_A | 385 | Chloroplast Nadp-Dependent Malate Dehydrogenase Fro | 2e-57 | ||
| 3fi9_A | 343 | Crystal Structure Of Malate Dehydrogenase From Porp | 1e-15 | ||
| 3gvh_A | 324 | Crystal Structure Of LactateMALATE DEHYDROGENASE FR | 2e-11 | ||
| 3nep_X | 314 | 1.55a Resolution Structure Of Malate Dehydrogenase | 1e-09 | ||
| 1mld_A | 314 | Refined Structure Of Mitochondrial Malate Dehydroge | 7e-08 | ||
| 2dfd_A | 342 | Crystal Structure Of Human Malate Dehydrogenase Typ | 8e-08 | ||
| 1hyg_A | 313 | Crystal Structure Of Mj0490 Gene Product, The Famil | 2e-07 | ||
| 1smk_A | 326 | Mature And Translocatable Forms Of Glyoxysomal Mala | 4e-07 | ||
| 1sev_A | 362 | Mature And Translocatable Forms Of Glyoxysomal Mala | 5e-07 | ||
| 1gv1_A | 310 | Structural Basis For Thermophilic Protein Stability | 5e-07 | ||
| 1guz_A | 310 | Structural Basis For Thermophilic Protein Stability | 6e-07 | ||
| 1gv0_A | 310 | Structural Basis For Thermophilic Protein Stability | 1e-06 | ||
| 2hjr_A | 328 | Crystal Structure Of Cryptosporidium Parvum Malate | 1e-06 | ||
| 2pwz_A | 312 | Crystal Structure Of The Apo Form Of E.Coli Malate | 2e-06 | ||
| 3p7m_A | 321 | Structure Of Putative Lactate Dehydrogenase From Fr | 2e-06 | ||
| 1emd_A | 312 | Crystal Structure Of A Ternary Complex Of Escherich | 2e-06 | ||
| 4e0b_A | 313 | 2.17 Angstrom Resolution Crystal Structure Of Malat | 6e-06 | ||
| 1ez4_A | 318 | Crystal Structure Of Non-Allosteric L-Lactate Dehyd | 6e-06 | ||
| 1ib6_A | 312 | Crystal Structure Of R153c E. Coli Malate Dehydroge | 9e-06 | ||
| 2v65_A | 331 | Apo Ldh From The Psychrophile C. Gunnari Length = 3 | 1e-05 | ||
| 1y6j_A | 318 | L-Lactate Dehydrogenase From Clostridium Thermocell | 2e-05 | ||
| 2j5k_A | 304 | 2.0 A Resolution Structure Of The Wild Type Malate | 2e-05 | ||
| 2x0r_A | 304 | R207s,R292s Mutant Of Malate Dehydrogenase From The | 2e-05 | ||
| 2hlp_A | 303 | Crystal Structure Of The E267r Mutant Of A Halophil | 2e-05 | ||
| 1o6z_A | 303 | 1.95 A Resolution Structure Of (r207s,r292s) Mutant | 2e-05 | ||
| 1hlp_A | 303 | Structural Features Stabilizing Halophilic Malate D | 2e-05 | ||
| 1v6a_A | 332 | Crystal Structure Of L-Lactate Dehydrogenase From C | 2e-05 | ||
| 2x0i_A | 294 | 2.9 A Resolution Structure Of Malate Dehydrogenase | 3e-05 | ||
| 1guy_A | 309 | Structural Basis For Thermophilic Protein Stability | 3e-05 | ||
| 1uxh_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 3e-05 | ||
| 1uxi_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 4e-05 | ||
| 3pqd_A | 326 | Crystal Structure Of L-Lactate Dehydrogenase From B | 7e-05 | ||
| 6ldh_A | 330 | Refined Crystal Structure Of Dogfish M4 Apo-Lactate | 9e-05 | ||
| 1ldm_A | 329 | Refined Crystal Structure Of Dogfish M4 Apo-Lactate | 9e-05 | ||
| 1llc_A | 325 | Structure Determination Of The Allosteric L-Lactate | 1e-04 | ||
| 5ldh_A | 334 | Structure Of The Active Ternary Complex Of Pig Hear | 1e-04 | ||
| 3pqe_A | 326 | Crystal Structure Of L-Lactate Dehydrogenase From B | 1e-04 | ||
| 2zqy_A | 326 | T-State Structure Of Allosteric L-Lactate Dehydroge | 1e-04 | ||
| 3vku_A | 326 | Penta Mutant Of Lactobacillus Casei Lactate Dehydro | 2e-04 | ||
| 1ur5_A | 309 | Stabilization Of A Tetrameric Malate Dehydrogenase | 2e-04 | ||
| 9ldt_A | 332 | Design And Synthesis Of New Enzymes Based On The La | 2e-04 | ||
| 2ldx_A | 331 | Characterization Of The Antigenic Sites On The Refi | 2e-04 | ||
| 3h3f_A | 331 | Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi | 5e-04 | ||
| 1i10_A | 331 | Human Muscle L-Lactate Dehydrogenase M Chain, Terna | 6e-04 | ||
| 4ajp_A | 337 | Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl- | 6e-04 | ||
| 1t2f_A | 333 | Human B Lactate Dehydrogenase Complexed With Nad+ A | 7e-04 | ||
| 1i0z_A | 333 | Human Heart L-Lactate Dehydrogenase H Chain, Ternar | 9e-04 |
| >pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334 | Back alignment and structure |
|
| >pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333 | Back alignment and structure |
|
| >pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345 | Back alignment and structure |
|
| >pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327 | Back alignment and structure |
|
| >pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329 | Back alignment and structure |
|
| >pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327 | Back alignment and structure |
|
| >pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331 | Back alignment and structure |
|
| >pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375 | Back alignment and structure |
|
| >pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385 | Back alignment and structure |
|
| >pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343 | Back alignment and structure |
|
| >pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324 | Back alignment and structure |
|
| >pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314 | Back alignment and structure |
|
| >pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314 | Back alignment and structure |
|
| >pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342 | Back alignment and structure |
|
| >pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313 | Back alignment and structure |
|
| >pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326 | Back alignment and structure |
|
| >pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362 | Back alignment and structure |
|
| >pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328 | Back alignment and structure |
|
| >pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312 | Back alignment and structure |
|
| >pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321 | Back alignment and structure |
|
| >pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312 | Back alignment and structure |
|
| >pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313 | Back alignment and structure |
|
| >pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318 | Back alignment and structure |
|
| >pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312 | Back alignment and structure |
|
| >pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331 | Back alignment and structure |
|
| >pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318 | Back alignment and structure |
|
| >pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304 | Back alignment and structure |
|
| >pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304 | Back alignment and structure |
|
| >pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303 | Back alignment and structure |
|
| >pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303 | Back alignment and structure |
|
| >pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303 | Back alignment and structure |
|
| >pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332 | Back alignment and structure |
|
| >pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294 | Back alignment and structure |
|
| >pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309 | Back alignment and structure |
|
| >pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326 | Back alignment and structure |
|
| >pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330 | Back alignment and structure |
|
| >pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329 | Back alignment and structure |
|
| >pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325 | Back alignment and structure |
|
| >pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334 | Back alignment and structure |
|
| >pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326 | Back alignment and structure |
|
| >pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326 | Back alignment and structure |
|
| >pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326 | Back alignment and structure |
|
| >pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309 | Back alignment and structure |
|
| >pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332 | Back alignment and structure |
|
| >pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331 | Back alignment and structure |
|
| >pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331 | Back alignment and structure |
|
| >pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331 | Back alignment and structure |
|
| >pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337 | Back alignment and structure |
|
| >pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333 | Back alignment and structure |
|
| >pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327 | Back alignment and structure |
|---|
Score = 460 bits (1186), Expect = e-164
Identities = 163/302 (53%), Positives = 207/302 (68%), Gaps = 5/302 (1%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
FPLL G+ AT D A + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q+++K V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242
+WGNHSS+ +PD+ HA V+ +P ELV D W FI TV QRGAAII+AR S
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
SA SAA++A +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 TD 304
+
Sbjct: 297 LE 298
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 | Back alignment and structure |
|---|
Score = 459 bits (1182), Expect = e-164
Identities = 162/304 (53%), Positives = 208/304 (68%), Gaps = 7/304 (2%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMEL 58
MAK P+RV VTGAAGQI Y+L+ IA G MLG DQPVIL +L+IP A +AL GV ME+
Sbjct: 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI 60
Query: 59 VDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE 118
D AFPLL G+ A D + A ++A++VG PR GMERKD++ N I+ Q A++
Sbjct: 61 DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 119 QHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSD 178
A+ N KVLVV NPANTNA I + APS+PAKN T + RLDHNRAL QI+ K VS
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180
Query: 179 VKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238
++ + +WGNHS + Y D +A ++ V++++ DDAW F+ TV +RGAAII A
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQID----GASVKDMINDDAWNRDTFLPTVGKRGAAIIDA 236
Query: 239 RKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWT 298
R +SSA SAA++A DHI DWVLGT G W +MG+ SDGSY +P G+I+ FPVT NGE+
Sbjct: 237 RGVSSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYK 295
Query: 299 IVQG 302
IVQG
Sbjct: 296 IVQG 299
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333 | Back alignment and structure |
|---|
Score = 445 bits (1146), Expect = e-158
Identities = 183/300 (61%), Positives = 223/300 (74%), Gaps = 1/300 (0%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 61
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK V+AT A +++A++VG PR++GMERKD++ NV I+K Q +AL+++A
Sbjct: 62 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 121
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V DVKNVI
Sbjct: 122 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 181
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
IWGNHSS+QYPDVNHA V A E V E VKDD+WL GEFITTVQQRGAA+IKARKLSS
Sbjct: 182 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 241
Query: 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
A+SAA + CDH+RD GTPEG +VSMG+ SDG SY VP L+YSFPVT ++ W IV+G
Sbjct: 242 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 301
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375 | Back alignment and structure |
|---|
Score = 444 bits (1143), Expect = e-157
Identities = 129/304 (42%), Positives = 176/304 (57%), Gaps = 6/304 (1%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
K+ V + V+GAAG I L+ +A G + G DQP+ L +L + +AL GV MEL D
Sbjct: 28 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELED 87
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
+ +PLL+ V D E V+ A+++G PR GMER ++ N I+ Q AL
Sbjct: 88 SLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 147
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
A+ N KVLVV NP NTNALI + AP IPAKN LTRLD NRA Q++ K V V
Sbjct: 148 ASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 207
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NV IWGNHS++Q PD +A ++ +PV+E++K WL EF TVQ+RG A+I+
Sbjct: 208 NVTIWGNHSTTQVPDFLNAKID----GRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWG 263
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTC-RNGEWT 298
SSA S A S D I+ V TPEG W S GVY+ G+ Y + +++S P +G++
Sbjct: 264 RSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYE 323
Query: 299 IVQG 302
+
Sbjct: 324 LATD 327
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343 | Back alignment and structure |
|---|
Score = 293 bits (753), Expect = 1e-98
Identities = 75/301 (24%), Positives = 121/301 (40%), Gaps = 19/301 (6%)
Query: 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
++ + GAAG IG + A L + + L P A L GV E+ F
Sbjct: 8 EEKLTIVGAAGMIGSNMAQTAAMM-RLTPN--LCL----YDPFAVGLEGVAEEIRHCGFE 60
Query: 65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
L + T+D EA T V GG PRKEGM R+D++ N I ++ +
Sbjct: 61 GL-NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDC 119
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVII 184
V+++ NPA+ L+ ++ + +T L LD R ++++ ++ S V N
Sbjct: 120 KHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRT 178
Query: 185 WGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLN---GEFITTVQQRGAAIIKARKL 241
+G H + A VN G P+ +L+ D N E V + GA IIK R
Sbjct: 179 YGGHGEQMAVFASTAKVN---G-TPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGR 234
Query: 242 SSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQ 301
SS S + + + IR + G W + Y + ++ ++G
Sbjct: 235 SSFQSPSYVSIEMIRAAMGGEA-FRWPAG-CYVNV-PGFEHIMMAMETTITKDGVKHSDI 291
Query: 302 G 302
Sbjct: 292 N 292
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 5e-19
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 14/188 (7%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
++V V GAAG IG AL ++ + G++ L + DI P GV ++L +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTP---GVAVDLSHIPTAV 53
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
+ DA A G ++ ++ G RK GM+R D+ + N I K + + P
Sbjct: 54 KIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKA 112
Query: 126 KVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181
+ ++ NP NT A +LK+ A + +T LD R+ ++E Q +V
Sbjct: 113 CIGIITNPVNTTVAIAAEVLKK-AGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEV-E 170
Query: 182 VIIWGNHS 189
V + G HS
Sbjct: 171 VPVIGGHS 178
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 6e-19
Identities = 60/259 (23%), Positives = 105/259 (40%), Gaps = 39/259 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAFP 64
+V V GA+G IG L ++ P++ L + DI GV +L
Sbjct: 2 KVAVLGASGGIGQPLSLLLKN-------SPLVSRLTLYDIAHT----PGVAADLSHIETR 50
Query: 65 L-LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
+KG + + G ++ V+ G PRK GM R D+ + N +I +A QH P
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CP 109
Query: 124 NCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDV 179
+ + +++NP N+ A + K+ I +T LD RA ++E + + V
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHG-VYNPNKIFGVTTLDIVRANAFVAELKGLDPARV 168
Query: 180 KNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238
+V + G H+ + P ++ T + + L +Q+ G ++KA
Sbjct: 169 -SVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG-----------RIQEAGTEVVKA 216
Query: 239 RK------LSSALSAASSA 251
+ LS A + A
Sbjct: 217 KAGAGSATLSMAYAGARFV 235
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 6e-19
Identities = 50/257 (19%), Positives = 96/257 (37%), Gaps = 40/257 (15%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
M + +V V GA G G ++A V++ DIP G +++++
Sbjct: 4 MTIKRKKVSVIGA-GFTGATTAFLLA---QKELADVVLV---DIPQLENPTKGKALDMLE 56
Query: 61 AA-FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQ 119
A+ + T ++ V+ G RK GM R D+++ N I K+ + +
Sbjct: 57 ASPVQGFDANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAK 116
Query: 120 HAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ 167
H +PN ++V+ NP + + + R +GQ
Sbjct: 117 H-SPNAIIVVLTNPVDAMTYSVFKE------------AGFPKERVIGQSGVLDTARFRTF 163
Query: 168 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITT 227
I+++LN+ V D+ ++ G H P V ++ P+ L+ + +
Sbjct: 164 IAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYAGG----IPLETLIPKERLE--AIVER 216
Query: 228 VQQRGAAIIKARKLSSA 244
++ G I+ SA
Sbjct: 217 TRKGGGEIVGLLGNGSA 233
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 1e-18
Identities = 54/259 (20%), Positives = 104/259 (40%), Gaps = 41/259 (15%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP 64
++V V GA G +G + +A + V++ +DI G +++ +++
Sbjct: 1 MKVTVIGA-GNVGATVAECVA---RQDVAKEVVM--VDIKD--GMPQGKALDMRESSPIH 52
Query: 65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
V T+ ++ ++ G PR GM R D+++KN I + +P+
Sbjct: 53 GFDTRVTGTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPD 111
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKL 172
++VVANP + + E + NR +G I+E+L
Sbjct: 112 STIIVVANPLDVMTYVAYEA------------SGFPTNRVMGMAGVLDTGRFRSFIAEEL 159
Query: 173 NVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRG 232
+V V DV+ +++ G H + P + TV PV +L+ D E + + G
Sbjct: 160 DVSVRDVQALLM-GGHGDTMVPLPRYTTVGG----IPVPQLIDDARI--EEIVERTKGAG 212
Query: 233 AAIIKARKLSSALSAASSA 251
I+ S+ + ++A
Sbjct: 213 GEIVDLMGTSAWYAPGAAA 231
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 2e-18
Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 36/203 (17%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
+ + E ++ ++ G PRK M R D+++ N I + A + ++ PN V+
Sbjct: 71 IFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVI 128
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
+ NP + KE + + N+ G +S L V+
Sbjct: 129 CITNPLDAMVYYFKEK------------SGIPANKVCGMSGVLDSARFRCNLSRALGVKP 176
Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR----G 232
SDV +++ G H P + T+ + + V+ + I + ++ G
Sbjct: 177 SDVSAIVV-GGHGDEMIPLTSSVTIGG----ILLSDFVEQG-KITHSQINEIIKKTAFGG 230
Query: 233 AAIIKARKLSSALSAASSACDHI 255
I++ K SA A +++ +
Sbjct: 231 GEIVELLKTGSAFYAPAASAVAM 253
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 3e-18
Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 42/262 (16%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--- 62
++V + GA+G++G A ++A + ++L + + L G++ ++ DA
Sbjct: 1 MKVTIIGASGRVGSATALLLA---KEPFMKDLVL--IGREHSINKLEGLREDIYDALAGT 55
Query: 63 -FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121
V + + + ++ ++ G PRKEGM R D+ N I A + +
Sbjct: 56 RSDA-NIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI- 113
Query: 122 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------IS 169
K+ V+ NP + ++ + N+ G I+
Sbjct: 114 CDT-KIFVITNPVDVMTYKALVD------------SKFERNQVFGLGTHLDSLRFKVAIA 160
Query: 170 EKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQ 229
+ V + +V+ II G H S P ++ ++ P+++ + E I V+
Sbjct: 161 KFFGVHIDEVRTRII-GEHGDSMVPLLSATSIGG----IPIQKFERFKELPIDEIIEDVK 215
Query: 230 QRGAAIIKARKLSSALSAASSA 251
+G II+ K S A++
Sbjct: 216 TKGEQIIR-LKGGSEFGPAAAI 236
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 4e-18
Identities = 54/259 (20%), Positives = 105/259 (40%), Gaps = 41/259 (15%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP 64
+++ V GA G +G +A + ++L LD+ G +++ ++
Sbjct: 1 MKITVIGA-GNVGATTAFRLA---EKQLARELVL--LDV--VEGIPQGKALDMYESGPVG 52
Query: 65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
L V ++ +I ++ G PRK GM R+D++ KN I K + +H + N
Sbjct: 53 LFDTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKN 111
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKL 172
++VV+NP + + + L R +G I+ +L
Sbjct: 112 PIIIVVSNPLDIMTHVAWVR------------SGLPKERVIGMAGVLDAARFRSFIAMEL 159
Query: 173 NVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRG 232
V + D+ ++ G H + P V + TV P+ +L+ + + + + G
Sbjct: 160 GVSMQDINACVL-GGHGDAMVPVVKYTTVAG----IPISDLLPAETI--DKLVERTRNGG 212
Query: 233 AAIIKARKLSSALSAASSA 251
A I++ K SA A +S+
Sbjct: 213 AEIVEHLKQGSAFYAPASS 231
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 5e-18
Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 35/200 (17%)
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
+ V T+ + ++ ++ G PRK GM R D++ N+ + + ++ +
Sbjct: 53 CPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN 112
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
PN V+ + NP + +L++F + + N+ +G +
Sbjct: 113 -CPNAFVICITNPLDIMVNMLQKF------------SGVPDNKIVGMAGVLDSARFRTFL 159
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
+++LNV V V+ ++ G H + P + V + +LVK+ L E + +
Sbjct: 160 ADELNVSVQQVQAYVM-GGHGDTMVPLTKMSNVAG----VSLEQLVKEG-KLKQERLDAI 213
Query: 229 QQR----GAAIIKARKLSSA 244
R G I+ K SA
Sbjct: 214 VSRTRSGGGEIVALLKTGSA 233
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 1e-17
Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 32/208 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
+V V GAAG +G A IA + V+ +DIP + G +
Sbjct: 2 KVSVVGAAGTVGAAAGYNIA---LRDIADEVVF--VDIPDKEDDTVGQAADTNHGI-AYD 55
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
E G ++ V+ G PR+ G R D+ N I + S+L++H +
Sbjct: 56 SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYI 114
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNV 174
L +NP + L E + +G +SE+ +
Sbjct: 115 SLTTSNPVDLLNRHLYEA------------GDRSREQVIGFGGRLDSARFRYVLSEEFDA 162
Query: 175 QVSDVKNVIIWGNHSSSQYPDVNHATVN 202
V +V+ I+ G H +Q P + +V+
Sbjct: 163 PVQNVEGTIL-GEHGDAQVPVFSKVSVD 189
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 2e-17
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 35/200 (17%)
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
+ + A G ++ ++ G PRK GM R D++ N+ + + + ++++
Sbjct: 55 SPVDGFDAKFTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY 114
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
AP V+ + NP + L++F + L ++ +G +
Sbjct: 115 -APEAFVICITNPLDAMVWALQKF------------SGLPAHKVVGMAGVLDSARFRYFL 161
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
SE+ NV V DV ++ G H S P ++TV P+ +LVK W + + + +
Sbjct: 162 SEEFNVSVEDVTVFVL-GGHGDSMVPLARYSTVAG----IPLPDLVKMG-WTSQDKLDKI 215
Query: 229 QQR----GAAIIKARKLSSA 244
QR GA I+ K SA
Sbjct: 216 IQRTRDGGAEIVGLLKTGSA 235
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-17
Identities = 60/253 (23%), Positives = 108/253 (42%), Gaps = 31/253 (12%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAFP 64
+V + GAAG IG L ++ P++ LH+ D+ A GV ++
Sbjct: 10 KVAILGAAGGIGQPLAMLMKM-------NPLVSVLHLYDVVNA----PGVTADISHMDTG 58
Query: 65 L-LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
++G + A TG+++ ++ G PRK GM R D+ N I K + + P
Sbjct: 59 AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CP 117
Query: 124 NCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
V +++NP N+ I E A + K + +T LD RA ++E L + DV
Sbjct: 118 RAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVD 177
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKAR- 239
++ G+ + P ++ ++ ++ + L +Q G +++A+
Sbjct: 178 VPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDR-----------IQNGGTEVVEAKA 226
Query: 240 KLSSA-LSAASSA 251
SA LS A +A
Sbjct: 227 GAGSATLSMAYAA 239
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 2e-17
Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 33/195 (16%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
+ + E G +I ++ G RK GM R+ ++ N + A ++ + A + V+
Sbjct: 56 ISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVV 113
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
+ NP + ++ + T R +G IS+KL V
Sbjct: 114 ITTNPVDAMTYVMYKK------------TGFPRERVIGFSGILDSARMAYYISQKLGVSF 161
Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAII 236
V +++ G H +P ++V P+ L+ + E ++ GA I
Sbjct: 162 KSVNAIVL-GMHGQKMFPVPRLSSVGG----VPLEHLMSKEEI--EEVVSETVNAGAKIT 214
Query: 237 KARKLSSALSAASSA 251
+ R SS A+
Sbjct: 215 ELRGYSSNYGPAAGL 229
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 3e-17
Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 32/207 (15%)
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
+ V T+ ++ V+ G PRK GM R+D++ N I +A S
Sbjct: 50 SPIEGFDVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL 109
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
+PN +++V NP + + E + R +GQ I
Sbjct: 110 -SPNAVIIMVNNPLDAMTYLAAEV------------SGFPKERVIGQAGVLDAARYRTFI 156
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
+ + V V DV+ +++ G H P + ++ PV E + D + +
Sbjct: 157 AMEAGVSVEDVQAMLM-GGHGDEMVPLPRFSCISG----IPVSEFIAPDRL--AQIVERT 209
Query: 229 QQRGAAIIKARKLSSALSAASSACDHI 255
++ G I+ K SA A ++A +
Sbjct: 210 RKGGGEIVNLLKTGSAYYAPAAATAQM 236
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 4e-17
Identities = 39/208 (18%), Positives = 79/208 (37%), Gaps = 40/208 (19%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAP 123
V A A TG + ++ G + G R D++ N I + ++++ P
Sbjct: 66 VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CP 124
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEK 171
++VV NP + ++ E + + N G +++
Sbjct: 125 KTFIIVVTNPLDCMVKVMCEA------------SGVPTNMICGMACMLDSGRFRRYVADA 172
Query: 172 LNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR 231
L+V DV+ +I G H P V + TVN P+++ +KD + + + + +
Sbjct: 173 LSVSPRDVQATVI-GTHGDCMVPLVRYITVNG----YPIQKFIKDG-VVTEKQLEEIAEH 226
Query: 232 ----GAAIIKARKLSSALSAASSACDHI 255
G I++ SA A +++ +
Sbjct: 227 TKVSGGEIVRFLGQGSAYYAPAASAVAM 254
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 6e-17
Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 35/191 (18%)
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLV 129
V TD +G ++ ++ P + +R +++ N I + A ++++ PN V+
Sbjct: 61 VIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVIC 119
Query: 130 VANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVS 177
+ NP + ++ + L HN+ G I++ V S
Sbjct: 120 ITNPLDVMVSHFQKV------------SGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNAS 167
Query: 178 DVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR----GA 233
DV +I G H P + +V P+ +K + E I +
Sbjct: 168 DVSANVI-GGHGDGMVPATSSVSVGG----VPLSSFIKQG-LITQEQIDEIVCHTRIAWK 221
Query: 234 AIIKARKLSSA 244
+ K +A
Sbjct: 222 EVADNLKTGTA 232
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 7e-16
Identities = 52/253 (20%), Positives = 96/253 (37%), Gaps = 43/253 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
K+ +V++ G G +G + + + G Q + + +DI + G ++L +
Sbjct: 5 TDKDHQKVILVGD-GAVGSSYAYAMV---LQGIAQEIGI--VDI--FKDKTKGDAIDLSN 56
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
A P + ++ V+ G P+K G R D+++KN+ I K+ +
Sbjct: 57 AL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS 115
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
N LV ANP + + L+ NR +G I
Sbjct: 116 -GFNGIFLVAANPVDILTYATWK------------LSGFPKNRVVGSGTSLDTARFRQSI 162
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
+E +NV V I+ G H +++P +HA + G + E VK + + + +
Sbjct: 163 AEMVNVDARSVHAYIM-GEHGDTEFPVWSHANI---GG-VTIAEWVKAHPEIKEDKLVKM 217
Query: 229 QQR----GAAIIK 237
+ IIK
Sbjct: 218 FEDVRDAAYEIIK 230
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 2e-15
Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 39/184 (21%)
Query: 77 EACTGVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131
+ G ++ ++ GF + G R D++ N I ++++ PN ++VV
Sbjct: 68 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 126
Query: 132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVSDV 179
NP + +L + + + N+ +G IS+KLNV DV
Sbjct: 127 NPVDVMVQLLHQH------------SGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174
Query: 180 KNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR---GAAII 236
I+ G H + + TV P++E + + ++ + + R A I
Sbjct: 175 NAHIV-GAHGNKMVLLKRYITVGG----IPLQEFINNK-LISDAELEAIFDRTVNTALEI 228
Query: 237 KARK 240
Sbjct: 229 VNLH 232
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 3e-15
Identities = 53/253 (20%), Positives = 90/253 (35%), Gaps = 42/253 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
M K +V + GA G +G + + G +++ +D+ E G M+L
Sbjct: 1 MNKHVNKVALIGA-GFVGSSYAFALI---NQGITDELVV--IDV--NKEKAMGDVMDLNH 52
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
+ V + E C +I + G +K G R +++ KN+ I+K S +
Sbjct: 53 GKAFAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS 112
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
+ LV NP + + + L R +G +
Sbjct: 113 -GFDGIFLVATNPVDILTYATWK------------FSGLPKERVIGSGTTLDSARFRFML 159
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
SE +V II G H ++ P +HA V G PV ELV+ + E + +
Sbjct: 160 SEYFGAAPQNVCAHII-GEHGDTELPVWSHANV---GG-VPVSELVEKNDAYKQEELDQI 214
Query: 229 QQR----GAAIIK 237
II+
Sbjct: 215 VDDVKNAAYHIIE 227
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 8e-15
Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 43/248 (17%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
+++ + G G++G + + M G + ++L +D+ + G ++L+ P
Sbjct: 1 MKIGIVGL-GRVGSSTAFALL---MKGFAREMVL--IDV--DKKRAEGDALDLIHGT-PF 51
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
+ G ++ ++ G P+K G R ++ +N + K A + ++ AP+
Sbjct: 52 TRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDS 110
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLN 173
V+VV NP + + + +D + G I++
Sbjct: 111 IVIVVTNPVDVLTYFFLKE------------SGMDPRKVFGSGTVLDTARLRTLIAQHCG 158
Query: 174 VQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR-- 231
V +I G H S+ P + A + G P++ + + + + + ++
Sbjct: 159 FSPRSVHVYVI-GEHGDSEVPVWSGAMI---GG-IPLQNMCQVCQKCDSKILENFAEKTK 213
Query: 232 --GAAIIK 237
II+
Sbjct: 214 RAAYEIIE 221
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 3e-14
Identities = 48/253 (18%), Positives = 88/253 (34%), Gaps = 42/253 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
RV+V GA G +G + V + G ++L +D G M+
Sbjct: 2 KNNGGARVVVIGA-GFVGASYVFALM---NQGIADEIVL--IDA--NESKAIGDAMDFNH 53
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
K V + C ++ V+ G +K G R D++ KN++I+++ ++
Sbjct: 54 GKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS 113
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
LV NP + + + L H R +G +
Sbjct: 114 -GFQGLFLVATNPVDILTYATWK------------FSGLPHERVIGSGTILDTARFRFLL 160
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
E +V +V II G H ++ P + A + P+R+LV+ + + +
Sbjct: 161 GEYFSVAPQNVHAYII-GEHGDTELPVWSQAYI---GV-MPIRKLVESKGEEAQKDLERI 215
Query: 229 QQR----GAAIIK 237
II+
Sbjct: 216 FVNVRDAAYQIIE 228
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 1e-13
Identities = 59/254 (23%), Positives = 99/254 (38%), Gaps = 44/254 (17%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
M K +V + GA G +G + +A + T ++L +D+ E G M++
Sbjct: 3 MVKSRSKVAIIGA-GFVGASAAFTMA---LRQTANELVL--IDV--FKEKAIGEAMDINH 54
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
P + + ++ V+ G RK G R D+ KNV I K + ++
Sbjct: 55 GL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY 113
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
+ +LVV+NP + ++++ + L + +G +
Sbjct: 114 -YNHGVILVVSNPVDIITYMIQK------------WSGLPVGKVIGSGTVLDSIRFRYLL 160
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNG-----E 223
SEKL V V +V II G H SQ P + + AG K + E + D +
Sbjct: 161 SEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHI---AG-KNINEYIDDPKCNFTEEDKKK 215
Query: 224 FITTVQQRGAAIIK 237
V+ GA IIK
Sbjct: 216 IAEDVKTAGATIIK 229
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-13
Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 37/187 (19%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
+ + D E C ++ V+ G +K G R +++ V+I KA L + APN +
Sbjct: 64 IDGSDD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYM 121
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
++ NP + + ++ LT L N+ G I+++ V V
Sbjct: 122 LITNPVDIATHVAQK------------LTGLPENQIFGSGTNLDSARLRFLIAQQTGVNV 169
Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD--DAWLNGEFITTVQQR--- 231
+V I G H S+ P AT+ G P+ + L+ + + Q
Sbjct: 170 KNVHAYIA-GEHGDSEVPLWESATI---GG-VPMSDWTPLPGHDPLDADKREEIHQEVKN 224
Query: 232 -GAAIIK 237
II
Sbjct: 225 AAYKIIN 231
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 2e-13
Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 44/217 (20%)
Query: 41 MLDIPPA---AEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGM 97
++D+ A A +++ A P V + G V+ G ++ G
Sbjct: 30 LVDLDRKLAQAHA-----EDILHAT-PFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGE 83
Query: 98 ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157
R ++ +N ++ + + AP +LV NP + + L+
Sbjct: 84 TRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYA------------LS 130
Query: 158 RLDHNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 205
L R +G ++E L V V ++ G H S+ + A V
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQV---G 186
Query: 206 GEKPVRELVKDDAWLNG-----EFITTVQQRGAAIIK 237
G P+ E + V++ II+
Sbjct: 187 G-VPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE 222
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 4e-13
Identities = 38/213 (17%), Positives = 79/213 (37%), Gaps = 38/213 (17%)
Query: 41 MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERK 100
++D+ + G ++L DA + C ++ V+ G P+K G R
Sbjct: 35 IVDV--VKDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRL 91
Query: 101 DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
D+++KN++I + + + LV ANP + + +
Sbjct: 92 DLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWK------------FSGFP 138
Query: 161 HNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEK 208
R +G + ++ NV V I+ G H S++ + AT+ +
Sbjct: 139 KERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATI---GT-R 193
Query: 209 PVRELVKDDAWLNGEFITTVQQR----GAAIIK 237
PVR++ K+ ++ + + ++ II
Sbjct: 194 PVRDVAKEQ-GVSDDDLAKLEDGVRNKAYDIIN 225
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 5e-13
Identities = 46/249 (18%), Positives = 91/249 (36%), Gaps = 48/249 (19%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
+V++ D + ++ G ++EG R +++ +NV+I+K + ++ +P CK+L
Sbjct: 76 IVSSKD-YSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLL 133
Query: 129 VVANPANTNA-LILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQ 175
+V+NP + + K ++ NR +G + E+L V
Sbjct: 134 IVSNPVDILTYVAWK-------------ISGFPKNRVIGSGCNLDSARFRYLMGERLGVH 180
Query: 176 VSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNG-----EFITTVQQ 230
++ G H S P + V AG ++ L + V
Sbjct: 181 PLSCHGWVL-GEHGDSSVPVWSGVNV---AG-VSLKSLNPQLGTDADKEQWKDVHKQVVD 235
Query: 231 RGAAIIKARKLSS---ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYS 287
+IK + +S LS A A +++ + G Y + + S
Sbjct: 236 SAYEVIKLKGYTSWAIGLSVADLAESIMKN------LRRVHPISTMIKGLYGIKEDVFLS 289
Query: 288 FP-VTCRNG 295
P + +NG
Sbjct: 290 VPCILGQNG 298
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 6e-13
Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 33/176 (18%)
Query: 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
C ++ V+ G +K G R D++SKN+ I+K+ + + LV NP +
Sbjct: 70 SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDI 128
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVSDVKNVII 184
A + + L R +G +SE +V V II
Sbjct: 129 LAYATWK------------FSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176
Query: 185 WGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEF---ITTVQQRGAAIIK 237
G H ++ P +HA + AG +P++ L++ + + II+
Sbjct: 177 -GEHGDTELPVWSHANI---AG-QPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ 227
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 9e-13
Identities = 42/205 (20%), Positives = 80/205 (39%), Gaps = 22/205 (10%)
Query: 41 MLDI---PPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGM 97
++D AEA ++ AA P+ G + ++ G +K G
Sbjct: 30 LVDRDEDRAQAEA-----EDIAHAA-PVSHGTRVWHGGHSELADAQVVILTAGANQKPGE 83
Query: 98 ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157
R D++ KN I++ + + AP+ +LV +NP + + + AP I T
Sbjct: 84 SRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP--GQPVIGSGT 140
Query: 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD- 216
LD R +++ V + ++ G H S+ + A V AG PV + ++
Sbjct: 141 VLDSARFRHLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMV---AG-MPVADFMQAQ 195
Query: 217 ----DAWLNGEFITTVQQRGAAIIK 237
+ + + + A+II+
Sbjct: 196 NLPWNEQVRAKIDEGTRNAAASIIE 220
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-12
Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 27/145 (18%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
+V+ D G + V+ G ++EG R +++ +NV+I+K + +H +P+C
Sbjct: 78 IVSGKD-YSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKE 135
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
+ + L+ L +R +G + E+L V
Sbjct: 136 LHPELGTDKNKQDWK------------LSGLPMHRIIGSGCNLDSARFRYLMGERLGVHS 183
Query: 177 SDVKNVIIWGNHSSSQYPDVNHATV 201
V +I G H S +
Sbjct: 184 CLVIGWVI-GQHGDSVPSVWSGMWD 207
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-12
Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 37/191 (19%)
Query: 41 MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERK 100
+LD+ + +D L V + D + A + +
Sbjct: 44 LLDLSEGTKG------ATMDLEIFNLPNVEISKD-LSASAHSKVVIFTVN-SLGSSQSYL 95
Query: 101 DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
DV+ NV +++A AL + + + +LV + P + + L+
Sbjct: 96 DVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTYVTWK------------LSTFP 142
Query: 161 HNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEK 208
NR +G I+ L Q S + +I G + +
Sbjct: 143 ANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVI-GEQGEDKVLTWSGQEE---VVSH 198
Query: 209 PVRELVKDDAW 219
+ + + A
Sbjct: 199 TSQVQLSNRAM 209
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 6e-12
Identities = 53/247 (21%), Positives = 84/247 (34%), Gaps = 55/247 (22%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
+++ GA G++G + + L +DI A + G M+L AA
Sbjct: 1 MKLGFVGA-GRVGSTSAFTCL---LNLDVDEIAL--VDI--AEDLAVGEAMDLAHAA-AG 51
Query: 66 LKG---VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
+ +V D G I V+ G RK GM R D+ KN I K A + ++ A
Sbjct: 52 IDKYPKIVGGAD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-A 109
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISE 170
P K+LVV NP + I+ + + N G +
Sbjct: 110 PESKILVVTNPMDVMTYIMWKE------------SGKPRNEVFGMGNQLDSQRLKERLYN 157
Query: 171 KLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQ 230
+++ I G H S + + A GE + D V+
Sbjct: 158 AGAR---NIRRAWIIGEHGDSMFVAKSLADF---DGEVDWEAVEND-----------VRF 200
Query: 231 RGAAIIK 237
A +IK
Sbjct: 201 VAAEVIK 207
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 2e-09
Identities = 27/216 (12%), Positives = 69/216 (31%), Gaps = 42/216 (19%)
Query: 41 MLDIPPA---AEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPR---- 93
+D A A+ ++ DA L + A ++ + G +
Sbjct: 31 FIDANEAKVKADQ-----IDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQD 85
Query: 94 KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153
+R + S+ ++ + L++ + ++V++NP + + +
Sbjct: 86 NPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQH---------- 134
Query: 154 TCLTRLDHNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 201
+T ++ +G + E ++ V + G H +SQ+ + V
Sbjct: 135 --VTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRV 191
Query: 202 NTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237
G +P+ L ++ G ++
Sbjct: 192 ---MG-QPIVTLADAGDIDLAAIEEEARKGGFTVLN 223
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 2e-06
Identities = 33/229 (14%), Positives = 81/229 (35%), Gaps = 37/229 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYA--LVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL 58
M+ + +++ G G G+A L+ ++ + V L+ D+ EA ++ +
Sbjct: 1 MSLDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGT--VALY--DL--DFEAAQKNEV-I 52
Query: 59 VDAAFPLLKGVVATTDAVEACTGVN---IAVMVGGF---------PRKEGMERKDVMS-- 104
+ + A + +A + + I+++ G P + G+ + +
Sbjct: 53 GNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVG 112
Query: 105 --------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
+ V I+ A A+ +A P V+ NP + +L + P I A
Sbjct: 113 PGGIIRGLRAVPIFAEIARAIRDYA-PESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHE 171
Query: 157 TRLDHN---RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 202
+ + + D++ ++ NH + ++ ++
Sbjct: 172 VFGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTW-ITKASYRHID 219
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 41/258 (15%), Positives = 78/258 (30%), Gaps = 43/258 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMEL 58
M K+ +++ G G P I ++ ++ I L + D + ++
Sbjct: 24 MKKKSFSIVIAGG----GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDV 79
Query: 59 VDAAFPLLKGVVATTDAVEACTGVN---IAVMVGGF---------PRKEGMERKDVMS-- 104
ATTD EA T V+ + VG + P K G+ ++
Sbjct: 80 FIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPG 139
Query: 105 ------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA-------- 150
+++ +E+++ P+ +L +NPA A + P+
Sbjct: 140 GIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVAEATRRLRPNSKILNICDMPV 198
Query: 151 ---KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGE 207
+ + L + + LN I + P + G
Sbjct: 199 GIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTS---IQDQEGNDLMPKLKEHVSQY--GY 253
Query: 208 KPVRELVKDDAWLNGEFI 225
P E +A N F
Sbjct: 254 IPKTEAEAVEASWNDTFA 271
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 7 RVLVTGAAGQIGYALVP-MIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
R+LVTGAAGQ+G + + + + + + PA V+ +L DA
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMA-----EILRLADLSPLDPAGPNEECVQCDLADAN--A 57
Query: 66 LKGVVATTDAV 76
+ +VA D +
Sbjct: 58 VNAMVAGCDGI 68
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 3e-04
Identities = 34/212 (16%), Positives = 68/212 (32%), Gaps = 34/212 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKM-- 56
M K +++ G G + P + G++ + + L ++DIP E L V
Sbjct: 4 MDK-RLKIATIGG----GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA 58
Query: 57 ELVDAAFPLLKGVVATTDAVEACTGVN---IAVMVGGF---------PRKEGMERKDVMS 104
+ + + + T D A G + VGG P K G+ ++
Sbjct: 59 KRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNG 118
Query: 105 --------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
+ + + +E+ P+ ++ NPA + + + C
Sbjct: 119 PGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGMVTEAVLRYTKQEKVVGL-CN 176
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188
+ + ++ L V V NH
Sbjct: 177 VPIGMRMGVAKL---LGVDADRVHIDFAGLNH 205
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI--PPAAEALNG----V 54
+ + + + + GAAG +G L + + LG ++D+ P A +G
Sbjct: 10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDAR 69
Query: 55 KMELVDAAFPLLKGVVAT-TDAV 76
+L + +V D +
Sbjct: 70 AADLSAPG--EAEKLVEARPDVI 90
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 320 | |||
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 100.0 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 100.0 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 100.0 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 100.0 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 100.0 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 100.0 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 100.0 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 100.0 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 100.0 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 100.0 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 100.0 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 100.0 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 100.0 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 100.0 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 100.0 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 100.0 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 100.0 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 100.0 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 100.0 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 100.0 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 100.0 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 100.0 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 100.0 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 100.0 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 100.0 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 100.0 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 100.0 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 100.0 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 100.0 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 100.0 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 100.0 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 100.0 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 100.0 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 100.0 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 100.0 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 100.0 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 100.0 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 100.0 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 100.0 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 100.0 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 99.97 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 99.94 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 99.92 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.27 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.26 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.25 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.24 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.22 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.2 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.19 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.18 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.16 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.16 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.15 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.15 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.13 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.13 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.12 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.12 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.12 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.1 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.1 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.09 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.08 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.08 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.08 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.07 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.06 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.06 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.06 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.03 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.03 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.03 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.03 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.02 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.02 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.01 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.01 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.01 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 98.98 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 98.98 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 98.98 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 98.97 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 98.97 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 98.97 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 98.96 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 98.95 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 98.95 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 98.95 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 98.95 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 98.94 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 98.93 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 98.93 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 98.93 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 98.91 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 98.91 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 98.91 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 98.9 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 98.89 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 98.88 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 98.87 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 98.87 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 98.86 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 98.86 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 98.85 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 98.83 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 98.83 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 98.83 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 98.82 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 98.82 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 98.8 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 98.8 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 98.79 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 98.79 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 98.79 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 98.78 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 98.74 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 98.73 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 98.72 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 98.72 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 98.71 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 98.69 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 98.69 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 98.69 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 98.69 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 98.69 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 98.69 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 98.68 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 98.68 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 98.68 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 98.68 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 98.68 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 98.66 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 98.66 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.65 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 98.65 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 98.64 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 98.64 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 98.64 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 98.63 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 98.63 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 98.63 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 98.62 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 98.62 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.61 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 98.61 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 98.61 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 98.61 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 98.61 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 98.61 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 98.61 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 98.6 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 98.6 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 98.6 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 98.6 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 98.6 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 98.6 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 98.6 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 98.6 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 98.6 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 98.59 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 98.59 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 98.58 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 98.58 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 98.58 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 98.58 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 98.57 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 98.57 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 98.57 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 98.57 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 98.56 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 98.56 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.56 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 98.55 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 98.54 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 98.54 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 98.54 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 98.54 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 98.54 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 98.54 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 98.54 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 98.54 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 98.53 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 98.53 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 98.52 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 98.52 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 98.52 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 98.52 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 98.51 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 98.51 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 98.51 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 98.5 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 98.5 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 98.5 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 98.5 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 98.49 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 98.49 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 98.49 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.49 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.48 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 98.48 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 98.48 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 98.48 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 98.48 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 98.48 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 98.48 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 98.48 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 98.48 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 98.48 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 98.48 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 98.48 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 98.47 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.47 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 98.47 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 98.47 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 98.47 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 98.46 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 98.46 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 98.45 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 98.45 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 98.45 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.45 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 98.45 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 98.45 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 98.45 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 98.45 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 98.45 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 98.44 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 98.44 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 98.44 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 98.44 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 98.44 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 98.44 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 98.43 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 98.43 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 98.43 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 98.43 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 98.43 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 98.43 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 98.43 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 98.43 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 98.42 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 98.42 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 98.42 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 98.42 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 98.42 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 98.41 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 98.41 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 98.41 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 98.41 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 98.41 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 98.4 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 98.4 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 98.4 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 98.4 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.4 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 98.4 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 98.4 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 98.4 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 98.4 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 98.39 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 98.39 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 98.39 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 98.39 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 98.39 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 98.39 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 98.39 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 98.39 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 98.38 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 98.38 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 98.38 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 98.38 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 98.38 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 98.38 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 98.38 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 98.38 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 98.37 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 98.37 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 98.37 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 98.37 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 98.37 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 98.36 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 98.36 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 98.36 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 98.35 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 98.35 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 98.35 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 98.35 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 98.35 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 98.35 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 98.35 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 98.35 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 98.34 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 98.34 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.34 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 98.34 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 98.34 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 98.34 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 98.34 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 98.34 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 98.33 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.33 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 98.32 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 98.32 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 98.32 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 98.32 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 98.31 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 98.3 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 98.3 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 98.3 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.3 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 98.29 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 98.29 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 98.29 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.28 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 98.28 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 98.28 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 98.27 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 98.27 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.27 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.26 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 98.26 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.25 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 98.24 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 98.24 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 98.23 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 98.23 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.22 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 98.21 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 98.21 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.21 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 98.2 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.2 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 98.19 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 98.18 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.18 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 98.17 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 98.17 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 98.17 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 98.16 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 98.15 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.14 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.14 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 98.11 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 98.11 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 98.1 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 98.1 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 98.1 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 98.1 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 98.1 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.09 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 98.08 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.08 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 98.07 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 98.06 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 98.06 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.05 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 98.04 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.04 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.04 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 98.02 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 98.01 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 98.01 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.99 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 97.98 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.98 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.97 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.97 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.97 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 97.95 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.95 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.94 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 97.93 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.91 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.9 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 97.9 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.89 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 97.89 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.89 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 97.88 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.88 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 97.86 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.86 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 97.84 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.83 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.83 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 97.83 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.82 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.82 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 97.81 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 97.81 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.8 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 97.8 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 97.8 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 97.8 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.8 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 97.79 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.79 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.78 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.78 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.78 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.77 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 97.76 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.76 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.75 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.73 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.72 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.72 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 97.72 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 97.71 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 97.7 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.69 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.67 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.66 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.65 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.64 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.62 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 97.61 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 97.58 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.58 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 97.57 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 97.57 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.57 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.56 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.55 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 97.54 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 97.54 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 97.52 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 97.51 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.47 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 97.47 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.46 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.46 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.45 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 97.44 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 97.44 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.43 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 97.4 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.39 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 97.37 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.33 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.26 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.24 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.22 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.21 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.19 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 97.18 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.16 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.16 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 97.16 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.16 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.09 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.06 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.02 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 97.02 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 97.02 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 97.01 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.99 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.95 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.95 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.95 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 96.93 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.91 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.89 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 96.86 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.85 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 96.85 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 96.84 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 96.79 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.74 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 96.69 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.66 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.66 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 96.65 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.65 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 96.64 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.56 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 96.54 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.52 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 96.49 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.39 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.38 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.37 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 96.36 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 96.34 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.33 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 96.33 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.33 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 95.3 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 96.29 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.29 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 96.29 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 96.27 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.26 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 96.25 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 96.24 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 96.24 |
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-71 Score=516.53 Aligned_cols=311 Identities=41% Similarity=0.644 Sum_probs=281.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+++||+|+||+|+||+++++.|+.+++++.++...++++|++.+.++++|+++||+|+..++..++.+.++.+++++|||
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daD 110 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 110 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCC
Confidence 46899999988999999999999999987444334445555545567899999999998777777888888999999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 163 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r 163 (320)
+||++||.|+++|++|.|++..|+++++++++.+.+++.|+++++++|||+|++|++++++++.+|+++|+++|.||++|
T Consensus 111 vVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia~k~sg~~~~rvig~gT~LDsaR 190 (375)
T 7mdh_A 111 WALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENR 190 (375)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHHH
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHcCCCCccEEEeeehHHHHH
Confidence 99999999999999999999999999999999999983389999999999999999999975566666699999999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCccc
Q 020875 164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243 (320)
Q Consensus 164 ~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~~ 243 (320)
+++++|+++|++|.+|++++||||||+|+||+||+++| +|+|+.+++.++.|..++|.++++++|++|++.||.|+
T Consensus 191 ~r~~lA~~lgv~~~~V~~v~V~GeHgdt~vp~~S~a~V----~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~ts 266 (375)
T 7mdh_A 191 AKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI----DGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRSS 266 (375)
T ss_dssp HHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHTSSCC
T ss_pred HHHHHHHHhCcChhhcccceEEecCCCceeeeeecccC----CCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999865799999999999999999 99999999988889889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCC-ccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 244 ~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g-~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
+.+++.++++.|.+|+.++|+++|+|+|++++| +||+|+|+|||+||++| +|+|+++++++|+++||++|+.++.
T Consensus 267 ~a~aa~~i~~~i~~~l~g~d~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l~L~~~E~~~l~~Sa~ 343 (375)
T 7mdh_A 267 AASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEA 343 (375)
T ss_dssp HHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCCCCCHHHHHHHHHHHH
Confidence 877788899999999986678999999999999 79999999999999999 8999999669999999999998764
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-69 Score=499.46 Aligned_cols=309 Identities=56% Similarity=0.885 Sum_probs=275.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
+.||+|+||+|.||++++++|+++.+++.+...+++|+|+++...+++|.++||+|+.++....+..+++.+++++|||+
T Consensus 24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~adv 103 (345)
T 4h7p_A 24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAI 103 (345)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCE
Confidence 46999999999999999999999998887767799999998666678899999999988887788888899999999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCC-cEEEeehhhHHH
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK-NITCLTRLDHNR 163 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~-~i~~~t~ld~~r 163 (320)
||++||.||+||++|+|++..|+++++++++.|.++++|+++++++|||+|+++++++++++++|+. +|+++|.||++|
T Consensus 104 Vvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g~~~~r~i~~~t~LDs~R 183 (345)
T 4h7p_A 104 AIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDHNR 183 (345)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTTCSCGGGEEECCHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccCCCCcceeeeccchhHHH
Confidence 9999999999999999999999999999999999998788999999999999999988877776555 589999999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCccc
Q 020875 164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243 (320)
Q Consensus 164 ~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~~ 243 (320)
+++++|+++|++|.+|++++||||||++|||+||++++ +|+|+.+++.++ |..+++.++++++|++|++.||.++
T Consensus 184 ~~~~la~~~~v~~~~V~~~~V~G~HG~t~vp~~s~a~v----~g~~~~~~~~~~-~~~~~~~~~v~~~g~eIi~~kg~ss 258 (345)
T 4h7p_A 184 ALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVI----GTTPAREAIKDD-ALDDDFVQVVRGRGAEIIQLRGLSS 258 (345)
T ss_dssp HHHHHHHHHTSCGGGEECCEEEBCSSTTCEEECTTCEE----TTEEGGGGCCC-------HHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHCcChhheecceeecCCCCeEEeeeccceE----CCccHHHhcchh-hHHHHHHHHHHhhhhhhhhcCCCcc
Confidence 99999999999999999888899999999999999999 999999988654 5567899999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEEEEec-CCccCCCCceEEEEEEEEeCCeEEEecCCCCChhhhhcccCccc
Q 020875 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYS-DGSYNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 244 ~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~-~g~yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
++++|+++++++++|+.++++..++++++++ +|+||+|+|+|||+||++++|+|++++.++|+++||++|+.++.
T Consensus 259 ~~s~a~a~~~~~~~~l~~~~~~~~vs~~v~s~~g~YGi~~~v~~s~Pv~~~~G~~~iv~~l~l~~~e~~~l~~s~~ 334 (345)
T 4h7p_A 259 AMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHAGEWTVVSGKLNGDLGKQRLASTIA 334 (345)
T ss_dssp CHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCTTCCCSSCEEEEEEEEETTEEEECCSCC-----CGGGHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCCceEEEEEEEeCCCCcCCCCCEEEEEEEEEeCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999976677788888887 49999999999999999999999999889999999999988763
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-69 Score=501.65 Aligned_cols=312 Identities=59% Similarity=0.916 Sum_probs=280.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+|+||+||||+|+||+++++.|+.+++++.++..+++|+|++++.++++|.++||+|...++..++..+++.+++++|||
T Consensus 2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daD 81 (333)
T 5mdh_A 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (333)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCC
Confidence 57899999999999999999999999987555556999999754568899999999987666677888888899999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCe-EEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC-KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~-~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~ 162 (320)
+||++||.|++++++|.|++..|+++++++++.+++++ |++ +++++|||+|++|++++++++++|+++|+++|.||+.
T Consensus 82 vVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~-~~~~~vivvsNPvd~~t~~~~~~~~~~p~~~ig~~t~LDs~ 160 (333)
T 5mdh_A 82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYA-KKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHN 160 (333)
T ss_dssp EEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHS-CTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEcCCchHHHHHHHHHHcCCCCcCEEEEEEhHHHH
Confidence 99999999999999999999999999999999999999 665 7999999999999999997446777778899999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcc--hhhhcccchhhhhHHHHHHhhhhHHHHhcCC
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKP--VRELVKDDAWLNGEFITTVQQRGAAIIKARK 240 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg 240 (320)
|+++++|+++|++|.+|++++||||||+||||+||+++++. +|.| +.+++.++.|.++++.++++++|++|++.||
T Consensus 161 R~~~~la~~l~v~~~~v~~~vV~GeHgds~vp~~S~a~v~i--~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k~ 238 (333)
T 5mdh_A 161 RAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKL--QAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARK 238 (333)
T ss_dssp HHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEEC--SSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCcCHHHeeecEEEEcCCCCEEEeeeccEecc--CCeeccHHHhhccccccHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999998779999999999999998521 5765 4678877788889999999999999999888
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCC-ccCCCCceEEEEEEEEeCCeEEEecCCCCChhhhhcccCccc
Q 020875 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 241 ~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g-~yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
.++++++|.+++.++++|+.++++++++|+|++++| +||+|+|+|||+||++.+|+|+++++++||++||++|+.+|.
T Consensus 239 ~ssa~~~a~~~~~~~~~il~~~~~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~~~Gv~~iv~~l~L~~~E~~~l~~sa~ 317 (333)
T 5mdh_A 239 LSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAK 317 (333)
T ss_dssp SCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccCCCCCeEEEEEEEEcCCeEEEcCCCCCCHHHHHHHHHHHH
Confidence 777778888999999999987545789999999999 999988999999999999999999669999999999998764
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-66 Score=477.96 Aligned_cols=297 Identities=22% Similarity=0.278 Sum_probs=268.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC-cceEEeCChhhhc
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~al 79 (320)
|+++++||+|+| +|.||+++++.|+.+++++ +|+|+|++ .++++++++||.|. .+.. .++.+.++.++++
T Consensus 1 m~~~~~kI~ViG-aG~vG~~~a~~l~~~~~~~-----~l~l~D~~--~~k~~g~a~DL~~~-~~~~~~~v~i~~~~~~a~ 71 (326)
T 3pqe_A 1 MNKHVNKVALIG-AGFVGSSYAFALINQGITD-----ELVVIDVN--KEKAMGDVMDLNHG-KAFAPQPVKTSYGTYEDC 71 (326)
T ss_dssp -CCSCCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSC--HHHHHHHHHHHHHT-GGGSSSCCEEEEECGGGG
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHhCCCCc-----eEEEEecc--hHHHHHHHHHHHhc-cccccCCeEEEeCcHHHh
Confidence 888889999999 5999999999999998864 99999996 47899999999998 3443 4555555667899
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE-eeh
Q 020875 80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LTR 158 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~-~t~ 158 (320)
+|||+||+++|.|++++++|.|++..|+++++++++.+++++ |+++++++|||+|++|++++++ +++|++|++| +|.
T Consensus 72 ~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~-p~a~vlvvtNPvd~~t~~~~k~-~g~p~~rviG~gt~ 149 (326)
T 3pqe_A 72 KDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASG-FDGIFLVATNPVDILTYATWKF-SGLPKERVIGSGTT 149 (326)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTH
T ss_pred CCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEcCChHHHHHHHHHHh-cCCCHHHEEeeccc
Confidence 999999999999999999999999999999999999999998 8999999999999999999996 7999999766 599
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhccc----chhhhhHHHHHHhhhhHH
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQQRGAA 234 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~ 234 (320)
||+.|+++++|+++|++|.+|+++ ||||||+|+||+||++++ +|+|+.+++.+ ++|..++|.++++++|++
T Consensus 150 LD~~R~~~~la~~lgv~~~~V~~~-V~GeHG~t~vp~~S~~~v----~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~e 224 (326)
T 3pqe_A 150 LDSARFRFMLSEYFGAAPQNVCAH-IIGEHGDTELPVWSHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYH 224 (326)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEECC-EEBSSSTTCEECGGGCEE----TTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHceee-eeecCCCceeeeeeeeeE----CCEEHHHHhhcccCCCHHHHHHHHHHHHhhhhe
Confidence 999999999999999999999997 599999999999999999 99999999865 467889999999999999
Q ss_pred HHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcc
Q 020875 235 IIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFL 313 (320)
Q Consensus 235 i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l 313 (320)
|++.||.|+| ++|+|+++++.+++. ++++++|+|++++|+||++ ++|||+||++| +|+++++ +++||++||++|
T Consensus 225 Ii~~kG~t~~-a~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~~-~v~~s~P~~lg~~Gv~~iv-~l~L~~~E~~~l 299 (326)
T 3pqe_A 225 IIEKKGATYY-GVAMSLARITKAILH--NENSILTVSTYLDGQYGAD-DVYIGVPAVVNRGGIAGIT-ELNLNEKEKEQF 299 (326)
T ss_dssp HHHHHSCCCH-HHHHHHHHHHHHHHT--TCCEEECCEEEEESGGGCE-EEEEECCEEEETTEEEEEC-CCCCCHHHHHHH
T ss_pred eeeCCCCcHH-HHHHHHHHHHHHHhc--CCCcEEEEEEeeccccCCC-ceEEEEEEEEcCCceEEEe-cCCCCHHHHHHH
Confidence 9999998765 557888887776554 5789999999999999995 99999999999 9999999 599999999999
Q ss_pred cCccc
Q 020875 314 SPIAF 318 (320)
Q Consensus 314 ~~~~~ 318 (320)
+.++.
T Consensus 300 ~~s~~ 304 (326)
T 3pqe_A 300 LHSAG 304 (326)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98763
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-66 Score=477.51 Aligned_cols=295 Identities=22% Similarity=0.315 Sum_probs=251.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
.+++||+|+|| |.||+++++.|+.+++++ +++|+|++ .++++|+++||.|.. ++..++.++++.+++++||
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~-----el~l~D~~--~~k~~g~a~DL~~~~-~~~~~~~i~~~~~~a~~~a 77 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQ-----EIGIVDIF--KDKTKGDAIDLEDAL-PFTSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCS-----EEEEECSC--HHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCC-----eEEEEeCC--hHHHHHHHhhHhhhh-hhcCCcEEEECcHHHhcCC
Confidence 35689999995 999999999999998875 99999996 478999999999986 3335666666778999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE-eehhhH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC-LTRLDH 161 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~-~t~ld~ 161 (320)
|+||++||.|+++|++|.|++..|+++++++++.+++++ |+++++++|||+|++|++++++ +++|++|++| +|.||+
T Consensus 78 DiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~ilvvtNPvdi~t~~~~k~-~g~p~~rviG~gt~LD~ 155 (326)
T 3vku_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDILTYATWKL-SGFPKNRVVGSGTSLDT 155 (326)
T ss_dssp SEEEECCCCC----------------CHHHHHHHHHTTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHH
T ss_pred CEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEccCchHHHHHHHHHh-cCCCHHHeeeecccCcH
Confidence 999999999999999999999999999999999999999 8999999999999999999996 8999999766 599999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhccc----chhhhhHHHHHHhhhhHHHHh
Q 020875 162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 162 ~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~i~~ 237 (320)
.|+++++|+++|++|.+|+++ ||||||+|+||+||+++| +|+|+.+++.+ ++|..++|.++++++|++|++
T Consensus 156 ~R~~~~la~~lgv~~~~V~~~-ViGeHGdt~vp~~S~a~v----~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~ 230 (326)
T 3vku_A 156 ARFRQSIAKMVNVDARSVHAY-IMGEHGDTEFPVWSHANI----GGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIK 230 (326)
T ss_dssp HHHHHHHHHHHTSCGGGEECC-EEBSSSTTCEECGGGCEE----TTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHCeEE-EEcCCCCeeEEeeecccc----CCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999997 599999999999999999 99999998865 467889999999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCc
Q 020875 238 ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPI 316 (320)
Q Consensus 238 ~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~ 316 (320)
.||.|+| ++|+++++++.+ |++ ++++++|+|++++|+||+ +++|||+||++| +|+++++ +++||++|+++|+.+
T Consensus 231 ~kG~t~~-a~a~a~~~~~~a-il~-~~~~v~~~s~~~~g~yg~-~~v~~s~P~~lg~~Gv~~iv-~l~L~~~E~~~l~~s 305 (326)
T 3vku_A 231 LKGATFY-GIATALARISKA-ILN-DENAVLPLSVYMDGQYGL-NDIYIGTPAVINRNGIQNIL-EIPLTDHEEESMQKS 305 (326)
T ss_dssp HHSCCCH-HHHHHHHHHHHH-HHT-TCCEEEEEEEEEEEGGGE-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHH
T ss_pred cCCCchH-HHHHHHHHHHHH-Hhc-CCCceEEEEeeccCccCC-CceEEEEEEEEcCCceEEEe-cCCCCHHHHHHHHHH
Confidence 9998876 457888876665 554 588999999999999999 599999999999 9999999 599999999999987
Q ss_pred cc
Q 020875 317 AF 318 (320)
Q Consensus 317 ~~ 318 (320)
+.
T Consensus 306 a~ 307 (326)
T 3vku_A 306 AS 307 (326)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-65 Score=468.42 Aligned_cols=293 Identities=20% Similarity=0.297 Sum_probs=261.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~a 82 (320)
+++||+|+|| |.||+++++.|+.+++.. +++|+|++ .++++++++||+|... +....+..+.+ +++++||
T Consensus 18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~-----el~L~Di~--~~~~~g~a~DL~~~~~~~~~~~i~~~~d-~~~~~~a 88 (331)
T 4aj2_A 18 PQNKITVVGV-GAVGMACAISILMKDLAD-----ELALVDVI--EDKLKGEMMDLQHGSLFLKTPKIVSSKD-YSVTANS 88 (331)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCS-----EEEEECSC--HHHHHHHHHHHHHTGGGCSCCEEEECSS-GGGGTTE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCc-----eEEEEeCC--hHHHHHHHHhhhhhhhccCCCeEEEcCC-HHHhCCC
Confidence 4689999995 999999999999988754 99999997 4789999999999853 22334444445 5789999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDH 161 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~ 161 (320)
|+||++||.|+++|++|+|++.+|+++++++++.+++++ |+++++++|||+|++|++++++ +++|++|++|. |.||+
T Consensus 89 DiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPvdi~t~~~~k~-sg~p~~rviG~gt~LD~ 166 (331)
T 4aj2_A 89 KLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLLIVSNPVDILTYVAWKI-SGFPKNRVIGSGCNLDS 166 (331)
T ss_dssp EEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHH
T ss_pred CEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHH-hCCCHHHEEeeccccHH
Confidence 999999999999999999999999999999999999998 8999999999999999999996 69999996555 99999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcc-------cchhhhhHHHHHHhhhhHH
Q 020875 162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK-------DDAWLNGEFITTVQQRGAA 234 (320)
Q Consensus 162 ~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~ 234 (320)
.|+++++|+++|++|.+|+++ ||||||+++||+||+++| +|+|+.+++. +++| ++|.++++++|++
T Consensus 167 ~R~~~~la~~lgv~~~~V~~~-ViGeHG~s~vp~~S~~~v----~G~p~~~~~~~~~~~~~~~~~--~~i~~~v~~~g~e 239 (331)
T 4aj2_A 167 ARFRYLMGERLGVHPLSCHGW-VLGEHGDSSVPVWSGVNV----AGVSLKSLNPQLGTDADKEQW--KDVHKQVVDSAYE 239 (331)
T ss_dssp HHHHHHHHHHHTSCGGGCBCC-EEBCSSTTCEECGGGCEE----TTEEHHHHCTTTTSTTCTTCT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHCEEe-EEecCCCceeEeeecCeE----CCEEHHHHHhhccCCCCHHHH--HHHHHHHHHhHHH
Confidence 999999999999999999998 599999999999999999 9999999864 2345 7999999999999
Q ss_pred HHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcc
Q 020875 235 IIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFL 313 (320)
Q Consensus 235 i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l 313 (320)
|++.||.|+| ++|+++++++.+++. |+++++|+|++++|+||+++++|||+||++| +|+++++ +++||++|+++|
T Consensus 240 Ii~~kg~t~~-a~a~a~a~~~~ail~--d~~~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv-~l~L~~~E~~~l 315 (331)
T 4aj2_A 240 VIKLKGYTSW-AIGLSVADLAESIMK--NLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVV-KVTLTPDEEARL 315 (331)
T ss_dssp HHHHHSSCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEE-CCCCCHHHHHHH
T ss_pred HhhcCCCCch-hHHHHHHHHHHHHHh--CCCCeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEc-cCCCCHHHHHHH
Confidence 9999998876 567888877766554 5789999999999999998899999999999 9999999 599999999999
Q ss_pred cCccc
Q 020875 314 SPIAF 318 (320)
Q Consensus 314 ~~~~~ 318 (320)
+.++.
T Consensus 316 ~~s~~ 320 (331)
T 4aj2_A 316 KKSAD 320 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-64 Score=466.89 Aligned_cols=313 Identities=51% Similarity=0.827 Sum_probs=280.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC--CccchhHHHHHHHhcccCCCCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~--~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (320)
|++++|||+||||+|+||++++..|+.+++++.++..+|+|+|++ ...+++++.++|+.|...+...+++.+++++++
T Consensus 1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~a 80 (329)
T 1b8p_A 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTA 80 (329)
T ss_dssp --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHH
Confidence 777789999999889999999999999887654444589999986 113567889999999654555678888899999
Q ss_pred cCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeeh
Q 020875 79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR 158 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ 158 (320)
++|||+|||+||.+++++++|.+++.+|+++++++++.+++++.|++++|++|||+|++|++++++.+++|++|++|+|.
T Consensus 81 l~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~~~~~p~~~v~g~t~ 160 (329)
T 1b8p_A 81 FKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLR 160 (329)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCH
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHHcCCCCHHHEEEeec
Confidence 99999999999999999999999999999999999999999954789999999999999999999755999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhc
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~ 238 (320)
||+.|+++++|+++|+++++|+.++||||||++++|+||++++ +|+|+.+++.++.|..+++.+++++++++|++.
T Consensus 161 Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s~~p~~s~~~v----~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~ 236 (329)
T 1b8p_A 161 LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQI----DGASVKDMINDDAWNRDTFLPTVGKRGAAIIDA 236 (329)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEE----TTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCHHHceEEEEEeccCCcEeeehHHCeE----CCeeHHHHhccchhhHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999776799999999999999999 999999988766777789999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEeCCeEEEecCCCCChhhhhcccCccc
Q 020875 239 RKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 239 kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
||+|+++++|.++++++.+|+.+ ++++++|+|++++|+||+|+|+|||+||++.+|++++++.++|+++|+++|++++.
T Consensus 237 kg~~~~~~~a~a~~~~~~ai~~~-~~~~~~~~s~~~~g~yg~~~~~~~s~P~~i~~Gv~~i~~~~~l~~~e~~~l~~s~~ 315 (329)
T 1b8p_A 237 RGVSSAASAANAAIDHIHDWVLG-TAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLN 315 (329)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEEEecCccCCCCCeEEEEEEEEcCCEEEecCCCCCCHHHHHHHHHHHH
Confidence 99988888888888888888875 37899999999999999999999999999999999999449999999999998764
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-64 Score=464.02 Aligned_cols=292 Identities=24% Similarity=0.366 Sum_probs=252.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEe-CChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-TDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~-~~~~~al~~aDv 84 (320)
|||+|+|| |.||+++++.|+.+++.+ +++|+|+++ ++++++++||+|...+...+..+. ++.+++++|||+
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~-----el~l~D~~~--~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDv 72 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAK-----EVVMVDIKD--GMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDV 72 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSS-----EEEEECSST--THHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC-----EEEEEeCch--HHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCE
Confidence 79999995 999999999999988764 999999975 678999999999764433333332 356899999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEee-hhhHHH
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT-RLDHNR 163 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t-~ld~~r 163 (320)
||+++|.|+++|++|.|++..|+++++++++.+++++ |+++++++|||+|++|+++++. +++|++|++|.| .||+.|
T Consensus 73 Vii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~-~g~p~~rviG~~t~LD~~R 150 (314)
T 3nep_X 73 CIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVANPLDVMTYVAYEA-SGFPTNRVMGMAGVLDTGR 150 (314)
T ss_dssp EEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECCSSHHHHHHHHHHH-HTCCGGGEEECCHHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecCCchhHHHHHHHHh-cCCChHHEEeecCchHHHH
Confidence 9999999999999999999999999999999999998 8999999999999999999996 899999987775 999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCccc
Q 020875 164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243 (320)
Q Consensus 164 ~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~~ 243 (320)
+++++|+++|++|.+|++++ |||||+|+||+||++++ +|+|+.+++.++ | .++|.++++++|++|++.||.++
T Consensus 151 ~~~~la~~lgv~~~~v~~~V-iG~Hg~t~vp~~S~~~v----~g~p~~~~~~~~-~-~~~i~~~v~~~g~eIi~~kg~sa 223 (314)
T 3nep_X 151 FRSFIAEELDVSVRDVQALL-MGGHGDTMVPLPRYTTV----GGIPVPQLIDDA-R-IEEIVERTKGAGGEIVDLMGTSA 223 (314)
T ss_dssp HHHHHHHHHTCCGGGEEEEE-EESSGGGEEEEEEEEEE----TTEEGGGTSCHH-H-HHHHHHHHHTHHHHHHHHHSSCC
T ss_pred HHHHHHHHhCcCHHHeEEEE-ECCCCCcEEeeeecCeE----CcEehhhccCHH-H-HHHHHHHHHHhHHHHHhccCCcH
Confidence 99999999999999999984 89999999999999999 999999988654 3 38899999999999999988545
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 244 ~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
++++|+++++++. +|++ ++++++|+|++++|+||+ +++|||+||++| +|+++++ +++||++||++|+.++.
T Consensus 224 ~~a~a~a~~~~~~-ail~-~~~~v~~~s~~~~g~yg~-~~~~~s~P~~lg~~Gv~~v~-~l~L~~~E~~~l~~s~~ 295 (314)
T 3nep_X 224 WYAPGAAAAEMTE-AILK-DNKRILPCAAYCDGEYGL-DDLFIGVPVKLGAGGVEEVI-EVDLDADEKAQLKTSAG 295 (314)
T ss_dssp CHHHHHHHHHHHH-HHHH-TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHc-CCCeEEEEEEEeccccCC-CceEEEEEEEEeCCEEEEec-CCCCCHHHHHHHHHHHH
Confidence 5677888886655 5554 578999999999999999 799999999999 8999888 79999999999998764
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-63 Score=458.82 Aligned_cols=296 Identities=21% Similarity=0.344 Sum_probs=263.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a 78 (320)
|+++++||+|+|| |.+|+++++.|+..++ + +|+|+|++++.+++++.++|+.|.... ...+++.+++ +++
T Consensus 4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~-~-----~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a 75 (315)
T 3tl2_A 4 MTIKRKKVSVIGA-GFTGATTAFLLAQKEL-A-----DVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YAD 75 (315)
T ss_dssp CCCCCCEEEEECC-SHHHHHHHHHHHHTTC-C-----EEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGG
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCC-C-----eEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHH
Confidence 7777889999995 9999999999999887 5 899999974346788999999987521 2345666555 789
Q ss_pred cCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-e
Q 020875 79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-T 157 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t 157 (320)
++|||+||+++|.|+++|++|.|++..|+++++++++.+.+++ |+++++++|||+|++|+++++. +++|++|++|. |
T Consensus 76 ~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvsNPvd~~t~~~~k~-sg~p~~rviG~gt 153 (315)
T 3tl2_A 76 TADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLTNPVDAMTYSVFKE-AGFPKERVIGQSG 153 (315)
T ss_dssp GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCH
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECCChHHHHHHHHHHh-cCCChHHEEeecc
Confidence 9999999999999999999999999999999999999999998 8999999999999999999996 79999997666 9
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
.||+.|+++++|+++|+++.+|++++ |||||+++||+||+++| +|+|+.+++.++. .++|.++++++|++|++
T Consensus 154 ~LD~~R~~~~la~~lgv~~~~v~~~v-iG~Hg~t~vp~~S~~~v----~g~p~~~~~~~~~--~~~i~~~v~~~g~eii~ 226 (315)
T 3tl2_A 154 VLDTARFRTFIAQELNLSVKDITGFV-LGGHGDDMVPLVRYSYA----GGIPLETLIPKER--LEAIVERTRKGGGEIVG 226 (315)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEECCE-EBCSGGGCEECGGGCEE----TTEEGGGTSCHHH--HHHHHHHHHTHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCcCHHHceeeE-ecCCCCcceeecccCeE----CCEEHHHhCCHHH--HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999985 89999999999999999 9999999876553 46999999999999999
Q ss_pred --cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 238 --ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 238 --~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
+||.+. +++|+++++++..++. ++++++|+|++++|+||+ +++|||+||++| +|+++++ +++|+++|+++|+
T Consensus 227 ~~~kgst~-~a~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~-~~~~~s~P~~~g~~Gv~~v~-~l~L~~~E~~~l~ 301 (315)
T 3tl2_A 227 LLGNGSAY-YAPAASLVEMTEAILK--DQRRVLPAIAYLEGEYGY-SDLYLGVPVILGGNGIEKII-ELELLADEKEALD 301 (315)
T ss_dssp HHSSSCCC-HHHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred hcCCCcch-HHHHHHHHHHHHHHHc--CCCcEEEEEEeccCccCC-CceEEEEEEEEeCCEEEEEc-CCCCCHHHHHHHH
Confidence 777665 5678899877665544 578999999999999999 799999999999 8999998 7999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
.++.
T Consensus 302 ~s~~ 305 (315)
T 3tl2_A 302 RSVE 305 (315)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-63 Score=450.44 Aligned_cols=279 Identities=21% Similarity=0.274 Sum_probs=245.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC--cceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~al~~aD 83 (320)
|||+|+| +|+||+++++.|+.+++++ |++|+|+++ ++++|+++||+|...+.. ..+.... .+++++|||
T Consensus 1 MKV~IiG-aG~VG~~~a~~l~~~~~~~-----el~L~Di~~--~~~~G~a~DL~h~~~~~~~~~~i~~~~-d~~~~~~aD 71 (294)
T 2x0j_A 1 MKLGFVG-AGRVGSTSAFTCLLNLDVD-----EIALVDIAE--DLAVGEAMDLAHAAAGIDKYPKIVGGA-DYSLLKGSE 71 (294)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHSCCS-----EEEEECSSH--HHHHHHHHHHHHHHGGGTCCCEEEEES-CGGGGTTCS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCC-----EEEEEeCCC--CcchhhhhhhhcccccCCCCCeEecCC-CHHHhCCCC
Confidence 7999999 5999999999999999875 999999974 678999999999865443 3444444 468999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc-EEEeehhhHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN 162 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~-i~~~t~ld~~ 162 (320)
+||++||.||+||++|+|++..|+++++++++.+.+++ |+++++++|||+|++|+++++. +|+|++| |+++|.||++
T Consensus 72 vVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNPvd~~t~i~~k~-sg~p~~rvig~gT~LDs~ 149 (294)
T 2x0j_A 72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKE-SGKPRNEVFGMGNQLDSQ 149 (294)
T ss_dssp EEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHH-SSCCTTSEEECCHHHHHH
T ss_pred EEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCcchhhHHhhHHH-cCCChhhEEEeeeEEeHH
Confidence 99999999999999999999999999999999999999 8999999999999999999996 7999988 5677999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCcc
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~ 242 (320)
||+++++++++.++. +++ ||||||++|||+||++++ +|.+. .+++.++++++|++|++.||.|
T Consensus 150 R~~~~l~~~~~~~~~--~~~-V~G~HGdt~vp~~S~~~v----~g~~~----------~~~i~~~~~~~g~eIi~~kGst 212 (294)
T 2x0j_A 150 RLKERLYNAGARNIR--RAW-IIGEHGDSMFVAKSLADF----DGEVD----------WEAVENDVRFVAAEVIKRKGAT 212 (294)
T ss_dssp HHHHHHHHTTCEEEC--CCC-EEBCSSTTCEECGGGCCE----ESCCC----------HHHHHHHHHTHHHHHHHHHSSC
T ss_pred HHHHHHhhcccCCcc--eeE-EEecCCCcEEEeeeccCC----CCchh----------HHHHHHHHhhhheEEEecCccc
Confidence 999999999987654 445 699999999999999999 77542 3678889999999999999977
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 243 ~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
.| ++|.+++++++ +|++ ++++++|+|++++|+||+ +++|||+||++| +|+ +++ +++||++||++|+.+|.
T Consensus 213 ~~-a~a~a~~~~~~-ail~-d~~~v~~~s~~l~g~yG~-~~v~~s~P~~lg~~Gv-ei~-~l~L~~~E~~~l~~s~~ 283 (294)
T 2x0j_A 213 IF-GPAVAIYRMVK-AVVE-DTGEIIPTSMILQGEYGI-ENVAVGVPAKLGKNGA-EVA-DIKLSDEEIEKLRNSAK 283 (294)
T ss_dssp CH-HHHHHHHHHHH-HHHT-TCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEE-EEC-CCCCCHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHH-HHHc-CCCcEEEEEEEEecCCCC-ccEEEEEEEEEeCCEE-EEe-CCCCCHHHHHHHHHHHH
Confidence 65 66788887665 4554 689999999999999999 799999999999 886 677 79999999999998764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-63 Score=462.96 Aligned_cols=293 Identities=26% Similarity=0.344 Sum_probs=253.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+++||+|+||+|+||+++++.++..|+.+ +|+|+|++ ++++++.++||.|...+ ..++..+++++++++|||
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~-----evvLiDi~--~~k~~g~a~DL~~~~~~-~~~i~~t~d~~~al~dAD 78 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTP-----NLCLYDPF--AVGLEGVAEEIRHCGFE-GLNLTFTSDIKEALTDAK 78 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTCCS-----CEEEECSC--HHHHHHHHHHHHHHCCT-TCCCEEESCHHHHHTTEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCCCC-----EEEEEeCC--chhHHHHHHhhhhCcCC-CCceEEcCCHHHHhCCCC
Confidence 35799999977999999999999988754 89999996 47889999999998532 246777788889999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeE-EEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK-VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~-viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~ 162 (320)
+||++||.|++++++|.|++..|+++++++++.+++++ |+++ ++++|||+|++|++++++ +++|++|++|+|.||++
T Consensus 79 vVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNPvd~~t~i~~k~-sg~p~~rv~g~t~LDs~ 156 (343)
T 3fi9_A 79 YIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNPADITGLVTLIY-SGLKPSQVTTLAGLDST 156 (343)
T ss_dssp EEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSSHHHHHHHHHHH-HTCCGGGEEEECCHHHH
T ss_pred EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCchHHHHHHHHHH-cCCCcceEEEecCcHHH
Confidence 99999999999999999999999999999999999999 8996 899999999999999997 68999999899999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcc-----cchhhhhHHHHHHhhhhHHHHh
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK-----DDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
|+++++|+++|++|.+|+..+||||||+++||+||+++| +|+|+.+++. +++| ++|.++++++|++|++
T Consensus 157 R~~~~la~~l~v~~~~v~~~~ViGeHgds~vp~~S~a~v----~G~pl~~~~~~~~~~~~~~--~~i~~~v~~~g~eIi~ 230 (343)
T 3fi9_A 157 RLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKV----NGTPLTDLIGTDKLTNEQW--AELKQRVVKGGANIIK 230 (343)
T ss_dssp HHHHHHHHHHTSCGGGEECCCEEESSGGGEEECGGGCEE----TTEEGGGTTTBTTBCHHHH--HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHcccceEEEcCCCceeeeeecceE----CCEEhhHhccccCCCHHHH--HHHHHHHHhhhHHHHH
Confidence 999999999999999998433699999999999999999 9999999864 2344 5899999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCC--CChhhhhccc
Q 020875 238 ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTD--AILYPMSFLS 314 (320)
Q Consensus 238 ~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~--L~~~E~~~l~ 314 (320)
.||+|+|+++|.++++++++++. +++.++|+|++++|+| . +++|||+||++| +|++++ +++ |+++||++|+
T Consensus 231 ~kg~ss~~s~A~a~~~~~~ail~--d~~~v~~~s~~~~g~~-~-~~v~~s~P~~lg~~Gv~~~--~~~~ll~~~E~~~l~ 304 (343)
T 3fi9_A 231 LRGRSSFQSPSYVSIEMIRAAMG--GEAFRWPAGCYVNVPG-F-EHIMMAMETTITKDGVKHS--DINQLGNEAERAALK 304 (343)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTT--SSCCCSCEEEEEEETT-E-EEEEEEESEEEETTEEEEC--CGGGSSCHHHHHHHH
T ss_pred ccCCCcHHhHHHHHHHHHHHHHh--CCCceEEEEEEEeCCC-c-CceEEEeEEEEeCCceEEE--ecCCCCCHHHHHHHH
Confidence 99999888989999988776554 5678999999999875 4 799999999999 888765 344 8999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
.+|.
T Consensus 305 ~Sa~ 308 (343)
T 3fi9_A 305 ESYS 308 (343)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-62 Score=445.12 Aligned_cols=279 Identities=22% Similarity=0.290 Sum_probs=249.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--CcceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~al~~aD 83 (320)
|||+|+|| |.+|+++++.|+.+++.+ +|+|+|+++ ++++++++|+.|...++ ..+++.+++ +++++|||
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~-----~v~L~D~~~--~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVD-----EIALVDIAE--DLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCS-----EEEEECSSH--HHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC-----eEEEEECCh--HHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCC
Confidence 69999996 999999999999988864 899999974 67888999999876333 345666667 89999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~~ 162 (320)
+||+++|.|++++++|.|++.+|+++++++++.+.+++ |+++++++|||+|++|++++++ +++|++|++|. |.||++
T Consensus 72 iVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvsNPvd~~t~~~~k~-~g~p~~rviG~gt~LD~~ 149 (294)
T 1oju_A 72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKE-SGKPRNEVFGMGNQLDSQ 149 (294)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHH-SCCCTTSEEECSHHHHHH
T ss_pred EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh-cCCCHHHEeecccccHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999996 89999997666 899999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCcc
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~ 242 (320)
|+++++| ++|++|++ +++ ||||||+++||+||++++ +|.| ..++|.++++++|++|++.||.|
T Consensus 150 R~~~~la-~l~v~~~~-~~~-V~G~Hg~t~vp~~s~~~v----~g~~----------~~~~~~~~v~~~g~eii~~kG~t 212 (294)
T 1oju_A 150 RLKERLY-NAGARNIR-RAW-IIGEHGDSMFVAKSLADF----DGEV----------DWEAVENDVRFVAAEVIKRKGAT 212 (294)
T ss_dssp HHHHHHH-HTTCBSCC-CCC-EEBCSSTTCEECGGGCCC----BSCC----------CHHHHHHHHHTTHHHHHHHHSSC
T ss_pred HHHHHHH-HhCCCccC-ceE-EEecCCCceeeecccceE----CCcC----------hHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 99999999 877 599999999999999999 8887 14789999999999999999976
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 243 ~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
+ +++|.++++++..++ + ++++++|+|++++|+||++ ++|||+||++| +|++ ++ +++|+++|+++|++++.
T Consensus 213 ~-~~~a~a~~~~~~ail-~-~~~~v~~~s~~~~g~yg~~-~~~~s~P~~~g~~Gv~-v~-~l~L~~~E~~~l~~s~~ 283 (294)
T 1oju_A 213 I-FGPAVAIYRMVKAVV-E-DTGEIIPTSMILQGEYGIE-NVAVGVPAKLGKNGAE-VA-DIKLSDEEIEKLRNSAK 283 (294)
T ss_dssp C-HHHHHHHHHHHHHHH-T-TCCCEEEEEEEEESGGGCE-EEEEEEEEEEETTEEE-EC-CCCCCHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHH-c-CCCeEEEEEecccccCCCC-ceEEEEEEEEeCCEEE-Ee-cCCCCHHHHHHHHHHHH
Confidence 5 567888887766554 4 5789999999999999995 99999999999 7777 66 79999999999998763
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-62 Score=449.46 Aligned_cols=293 Identities=20% Similarity=0.323 Sum_probs=257.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--CcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~al~~ 81 (320)
+++||+|+| +|.+|+++++.|+.+++. +|+|+|+++ +++++.++||.|...+. ..+++.+++ +++++|
T Consensus 4 ~~~kI~iiG-aG~vG~~~a~~l~~~~~~------~v~l~Di~~--~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~ 73 (321)
T 3p7m_A 4 ARKKITLVG-AGNIGGTLAHLALIKQLG------DVVLFDIAQ--GMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLEN 73 (321)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTCC------EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCc------eEEEEeCCh--HHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCC
Confidence 457999999 599999999999998862 899999975 67889999999975432 345555555 689999
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEee-hhh
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT-RLD 160 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t-~ld 160 (320)
||+||+++|.|+++|++|.|++.+|+++++++++.+++++ |+++++++|||+|++|++++++ +++|++|++|.| .||
T Consensus 74 aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~-sg~p~~rviG~~~~LD 151 (321)
T 3p7m_A 74 SDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKF-SGVPDNKIVGMAGVLD 151 (321)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEEECHHHH
T ss_pred CCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHh-cCCCHHHEEeeccchH
Confidence 9999999999999999999999999999999999999999 8999999999999999999996 799999977766 999
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh----hhhHHHHHHhhhhHHHH
Q 020875 161 HNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW----LNGEFITTVQQRGAAII 236 (320)
Q Consensus 161 ~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~i~ 236 (320)
+.|+++++|+++|++|.+|++++ |||||+++||+||++++ +|+|+.+++.+ .| ..+++.++++++|++|+
T Consensus 152 ~~R~~~~la~~l~v~~~~v~~~v-~G~HG~t~~p~~s~~~v----~g~p~~~~~~~-~~~~~~~~~~i~~~v~~~g~eIi 225 (321)
T 3p7m_A 152 SARFRTFLADELNVSVQQVQAYV-MGGHGDTMVPLTKMSNV----AGVSLEQLVKE-GKLKQERLDAIVSRTRSGGGEIV 225 (321)
T ss_dssp HHHHHHHHHHHHTCCGGGEECCE-EECSGGGEEECTTTCEE----TTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHceEee-ecCcCCceeeeeeeceE----CCEehhhhccc-cCCCHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999985 89999999999999999 99999998732 23 24678999999999999
Q ss_pred hcCCc-cchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecC-CccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcc
Q 020875 237 KARKL-SSALSAASSACDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFL 313 (320)
Q Consensus 237 ~~kg~-~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~-g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l 313 (320)
+.||. ++++++|+|+++++.+|+. ++++++|+|++++ |+||+|+|+|||+||++| +|++++ +++||++||++|
T Consensus 226 ~~~g~gsa~~~~a~a~~~~~~ail~--~~~~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v--~l~L~~~E~~~l 301 (321)
T 3p7m_A 226 ALLKTGSAYYAPAAAGIQMAESFLK--DKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI--EVEISDKEREQL 301 (321)
T ss_dssp HHHSSSCCCHHHHHHHHHHHHHHHT--TCCEEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC--CCCCCHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHc--CCCcEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe--CCCCCHHHHHHH
Confidence 96543 3456788999988877665 5789999999999 999998899999999999 677766 799999999999
Q ss_pred cCccc
Q 020875 314 SPIAF 318 (320)
Q Consensus 314 ~~~~~ 318 (320)
+.++.
T Consensus 302 ~~s~~ 306 (321)
T 3p7m_A 302 QVSIN 306 (321)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-61 Score=446.97 Aligned_cols=293 Identities=23% Similarity=0.367 Sum_probs=253.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--CcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~al~~ 81 (320)
+++||+|+|| |.+|+++++.|+..++ . +|+|+|+++ +++++.++|+.|...+. ..++..+++ +++++|
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~-~-----~v~L~Di~~--~~~~g~~~dl~~~~~~~~~~~~v~~t~d-~~a~~~ 75 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKEL-G-----DVVLFDIAE--GTPQGKGLDIAESSPVDGFDAKFTGAND-YAAIEG 75 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-C-----EEEEECSSS--SHHHHHHHHHHHHHHHHTCCCCEEEESS-GGGGTT
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCC-C-----eEEEEeCCc--hhHHHHHHHHhchhhhcCCCCEEEEeCC-HHHHCC
Confidence 4579999995 9999999999999886 2 899999975 67889999999975322 345666666 489999
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEee-hhh
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT-RLD 160 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t-~ld 160 (320)
||+||+++|.|+++|++|.|++.+|+++++++++.+++++ |+++++++|||+|++|++++++ +++|++|++|.| .||
T Consensus 76 aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~-sg~p~~rviG~~~~LD 153 (324)
T 3gvi_A 76 ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKF-SGLPAHKVVGMAGVLD 153 (324)
T ss_dssp CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCHHHH
T ss_pred CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHh-cCCCHHHEEeecCccH
Confidence 9999999999999999999999999999999999999999 8999999999999999999996 799999987776 899
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh----hhhHHHHHHhhhhHHHH
Q 020875 161 HNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW----LNGEFITTVQQRGAAII 236 (320)
Q Consensus 161 ~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~i~ 236 (320)
+.|+++++|+++|+++++|++++ |||||+++||+||++++ +|+|+.+++.+ .| ..+++.++++++|++|+
T Consensus 154 ~~R~~~~la~~lgv~~~~v~~~v-~G~HG~t~~p~~s~~~v----~g~p~~~~~~~-~~~~~~~~~~i~~~v~~~g~eIi 227 (324)
T 3gvi_A 154 SARFRYFLSEEFNVSVEDVTVFV-LGGHGDSMVPLARYSTV----AGIPLPDLVKM-GWTSQDKLDKIIQRTRDGGAEIV 227 (324)
T ss_dssp HHHHHHHHHHHHTCCGGGEECCE-EECSGGGEEECGGGCEE----TTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHCeEEE-EcCCCCceeeehhhCeE----CCEEHHHhhhc-cCCCHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999985 89999999999999999 99999998732 23 34679999999999999
Q ss_pred hcCCc-cchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 237 KARKL-SSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 237 ~~kg~-~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
+.||. ++++++|+|+++++.+++. ++++++|+|++++|+||++ ++|||+||++| +|+++++ +++||++||++|+
T Consensus 228 ~~~gkgsa~~~~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~~-~v~~s~P~~~g~~Gv~~v~-~l~L~~~E~~~l~ 303 (324)
T 3gvi_A 228 GLLKTGSAFYAPAASAIQMAESYLK--DKKRVLPVAAQLSGQYGVK-DMYVGVPTVIGANGVERII-EIDLDKDEKAQFD 303 (324)
T ss_dssp HHHSSCCCCHHHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHc--CCCcEEEEEEEecCccCCC-ceEEEEEEEEeCCEEEEec-CCCCCHHHHHHHH
Confidence 96542 3446778999887766554 5789999999999999994 99999999999 9999998 7999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
.++.
T Consensus 304 ~s~~ 307 (324)
T 3gvi_A 304 KSVA 307 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-61 Score=442.32 Aligned_cols=294 Identities=20% Similarity=0.323 Sum_probs=253.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+++||+|+|| |+||+++++.|+.+++++ ||+|+|++ .+++++.++|+.|.. ++..+++++.+.+++++|||
T Consensus 4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~-----el~L~Di~--~~~~~g~~~dl~~~~-~~~~~~~v~~~~~~a~~~aD 74 (318)
T 1ez4_A 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAE-----EFVIVDVV--KDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDAD 74 (318)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCS-----EEEEECSS--HHHHHHHHHHHHGGG-GGSCCCEEEECCGGGGTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCC-----EEEEEeCC--chHHHHHHHHHHHHH-HhcCCeEEEECCHHHhCCCC
Confidence 3479999996 999999999999988864 99999996 478899999999986 44456666557789999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~~ 162 (320)
+||+++|.+++++++|.|++.+|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|++|. |.||+.
T Consensus 75 vVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~-s~~p~~rviG~gt~LD~~ 152 (318)
T 1ez4_A 75 LVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAANPVDILTYATWKF-SGFPKERVIGSGTSLDSS 152 (318)
T ss_dssp EEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHHH
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCcHHHHHHHHHHH-cCCCHHHEEeccccchHH
Confidence 99999999999999999999999999999999999998 8999999999999999999997 69999997655 999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh---hhhHHHHHHhhhhHHHHhcC
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW---LNGEFITTVQQRGAAIIKAR 239 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~i~~~k 239 (320)
|+++++|+++|++|.+|+.+ ||||||++++|+||++++ +|+|+.+++.+..| ..+++.+++++++++|++.|
T Consensus 153 R~~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k 227 (318)
T 1ez4_A 153 RLRVALGKQFNVDPRSVDAY-IMGEHGDSEFAAYSTATI----GTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK 227 (318)
T ss_dssp HHHHHHHHHHTCCGGGEECC-EESSSSSSCEECGGGCEE----TTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcChhHEEEE-EecccCCceEEEehhhcC----CCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCC
Confidence 99999999999999999977 599999999999999999 99999988754334 34789999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 240 KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
|.+++ ++|.++++++.+++. ++++++|+|++++|+||+| ++|||+||++| +|+++++ +++|+++|+++|++++.
T Consensus 228 g~t~~-~~a~a~~~~~~ai~~--~~~~~~~vs~~~~G~yg~~-~~~~~vP~~ig~~Gv~~i~-~~~L~~~e~~~l~~s~~ 302 (318)
T 1ez4_A 228 GATFY-GIGTALMRISKAILR--DENAVLPVGAYMDGQYGLN-DIYIGTPAIIGGTGLKQII-ESPLSADELKKMQDSAA 302 (318)
T ss_dssp SCCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred CcchH-HHHHHHHHHHHHHHh--CCCcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEc-CCCCCHHHHHHHHHHHH
Confidence 97765 557888888877665 5789999999999999997 99999999999 9999998 69999999999998764
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-60 Score=440.11 Aligned_cols=295 Identities=22% Similarity=0.305 Sum_probs=258.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
.+++||+|+|| |+||+++++.|+.+++++ ||+|+|++ .+++++.++||.|.. ++..++.++.+.+++++||
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~-----el~L~Di~--~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~~a 77 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQ-----EIGIVDIF--KDKTKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCS-----EEEEECSC--HHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGGGC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCC-----EEEEEeCC--chHhHHHHHHHHHHH-HhcCCeEEEECCHHHhCCC
Confidence 34689999996 999999999999888764 99999996 478899999999976 4445666655778999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDH 161 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~ 161 (320)
|+||+++|.+++++++|.+++.+|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|++|. |.||+
T Consensus 78 DvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~-s~~p~~rviG~gt~LD~ 155 (326)
T 2zqz_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDILTYATWKL-SGFPKNRVVGSGTSLDT 155 (326)
T ss_dssp SEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHHH-cCCCHHHEEEccccchH
Confidence 999999999999999999999999999999999999998 8999999999999999999997 69999997655 99999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcc-cchh---hhhHHHHHHhhhhHHHHh
Q 020875 162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK-DDAW---LNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 162 ~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~-~~~~---~~~~~~~~v~~~~~~i~~ 237 (320)
.|+++++|+++|+++.+|+.+ ||||||++++|+||++++ +|+|+.+++. +..| ..+++.+++++++++|++
T Consensus 156 ~R~~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~ 230 (326)
T 2zqz_A 156 ARFRQSIAEMVNVDARSVHAY-IMGEHGDTEFPVWSHANI----GGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK 230 (326)
T ss_dssp HHHHHHHHHHHTCCGGGEECC-EEBSSSTTCEECGGGCEE----TTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhCCChhheEEE-EecccCCceEeehhhceE----CCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999977 599999999999999999 9999998875 3234 346899999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCc
Q 020875 238 ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPI 316 (320)
Q Consensus 238 ~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~ 316 (320)
.||.+++ ++|.++++++.+++. ++++++|+|++++|+||+| ++|||+||++| +|+++++ +++|+++|+++|+++
T Consensus 231 ~kG~t~~-~~a~aa~~~~~ai~~--~~~~~~~vsv~~~G~yg~~-~~~~svP~~ig~~Gv~~i~-~~~L~~~e~~~l~~s 305 (326)
T 2zqz_A 231 LKGATFY-GIATALARISKAILN--DENAVLPLSVYMDGQYGLN-DIYIGTPAVINRNGIQNIL-EIPLTDHEEESMQKS 305 (326)
T ss_dssp HHSCCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHH
T ss_pred cCCCcHH-HHHHHHHHHHHHHHh--CCCcEEEEEEeccCccCCC-ceEEEEEEEEcCCeeEEEe-cCCCCHHHHHHHHHH
Confidence 9997765 557888888877665 5789999999999999997 99999999999 9999999 699999999999987
Q ss_pred cc
Q 020875 317 AF 318 (320)
Q Consensus 317 ~~ 318 (320)
+.
T Consensus 306 ~~ 307 (326)
T 2zqz_A 306 AS 307 (326)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-60 Score=436.44 Aligned_cols=295 Identities=21% Similarity=0.292 Sum_probs=262.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC-cceEEeCChhhhcCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEACTG 81 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~al~~ 81 (320)
++++||+|+|| |+||++++..|+.+++++ +|+|+|+++ +++++.++|+.|.. +.. .++.++.+.+++++|
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~-----ei~L~Di~~--~~~~g~~~dl~~~~-~~~~~~~~v~~~~~~a~~~ 74 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVD-----ELVIIDLDT--EKVRGDVMDLKHAT-PYSPTTVRVKAGEYSDCHD 74 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCS-----EEEEECSCH--HHHHHHHHHHHHHG-GGSSSCCEEEECCGGGGTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCC-----EEEEEeCCh--hHhhhhhhhHHhhh-hhcCCCeEEEeCCHHHhCC
Confidence 46789999996 999999999999888754 999999974 67888899999874 433 455555567899999
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhh
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLD 160 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld 160 (320)
||+||+++|.|++++++|.+++.+|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|++|. |.||
T Consensus 75 aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~k~-~~~p~~rviG~gt~lD 152 (317)
T 3d0o_A 75 ADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVATNPVDILAYATWKF-SGLPKERVIGSGTILD 152 (317)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCcHHHHHHHHHHH-hCCCHHHEEecCcccc
Confidence 9999999999999999999999999999999999999998 8999999999999999999997 69999997665 9999
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh---hhhHHHHHHhhhhHHHHh
Q 020875 161 HNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW---LNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 161 ~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~i~~ 237 (320)
+.|+++++|+++|+++++|+.+ ||||||++++|+||++++ +|+|+.+++.+..| ..+++.+++++++++|++
T Consensus 153 ~~r~~~~la~~l~v~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~ 227 (317)
T 3d0o_A 153 SARFRLLLSEAFDVAPRSVDAQ-IIGEHGDTELPVWSHANI----AGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ 227 (317)
T ss_dssp HHHHHHHHHHHHTSCGGGCBCC-EEBCSSTTCEECTTTCEE----TTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhCcChhhEEEE-EEecCCCCeeEeeecccc----CCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEe
Confidence 9999999999999999999977 599999999999999999 99999988754335 347889999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCc
Q 020875 238 ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPI 316 (320)
Q Consensus 238 ~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~ 316 (320)
.||.+++ ++|.++++++.+++. ++++++|+|++++|+||+| ++|+|+||++| +|+++++ +++|+++|+++|+++
T Consensus 228 ~kg~~~~-~~a~a~~~~~~ai~~--~~~~~~~~~~~~~g~~g~~-~~~~~vP~~ig~~Gv~~i~-~~~l~~~e~~~l~~s 302 (317)
T 3d0o_A 228 AKGATYY-GVAMGLARITEAIFR--NEDAVLTVSALLEGEYEEE-DVYIGVPAVINRNGIRNVV-EIPLNDEEQSKFAHS 302 (317)
T ss_dssp HHSCCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHH
T ss_pred CCCCchH-hHHHHHHHHHHHHHc--CCCcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEe-cCCCCHHHHHHHHHH
Confidence 9997765 457888888877665 5789999999999999997 99999999999 9999998 699999999999987
Q ss_pred cc
Q 020875 317 AF 318 (320)
Q Consensus 317 ~~ 318 (320)
+.
T Consensus 303 ~~ 304 (317)
T 3d0o_A 303 AK 304 (317)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-59 Score=432.01 Aligned_cols=291 Identities=22% Similarity=0.291 Sum_probs=258.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+||||+|+||++++..|+.+++.. +++|+|+.++.+++++..+|+.|... ...++.++.+.+++++|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~-----el~L~Di~~~~~~~~~~~~dl~~~~~-~~~~~~v~~~~~~a~~~aDvV 74 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYEDTAGSDVV 74 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCS-----EEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEcCCCChhhHHHHHHHHHHHHh-hCCCcEEEeCCHHHhCCCCEE
Confidence 699999999999999999999888753 89999993224567788899999764 444555543458999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhHHHH
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNRA 164 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~~r~ 164 (320)
||+||.+++++++|.+++.+|+++++++++.+++++ |+++++++|||+|++|++++++ +++|++|++|. |.||+.|+
T Consensus 75 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv~SNPv~~~~~~~~~~-~~~p~~rviG~gt~Ld~~r~ 152 (303)
T 1o6z_A 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDLLNRHLYEA-GDRSREQVIGFGGRLDSARF 152 (303)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHHHHHHHHHH-SSSCGGGEEECCHHHHHHHH
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHH-cCCCHHHeeecccchhHHHH
Confidence 999999999999999999999999999999999998 8999999999999999999997 79999998777 99999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCccch
Q 020875 165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSSA 244 (320)
Q Consensus 165 ~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~~~ 244 (320)
++++|+++|+++.+|+.+ ||||||++++|+||++++ +|.| +++.++.| +++.+++++++++|++.||.+++
T Consensus 153 ~~~la~~l~v~~~~v~~~-v~G~HG~~~~p~~s~~~v----~g~p--~~~~~~~~--~~~~~~v~~~g~eii~~kg~~~~ 223 (303)
T 1o6z_A 153 RYVLSEEFDAPVQNVEGT-ILGEHGDAQVPVFSKVSV----DGTD--PEFSGDEK--EQLLGDLQESAMDVIERKGATEW 223 (303)
T ss_dssp HHHHHHHHTCCGGGEECC-EEECSSTTEEECGGGCEE----TTBC--CCCCHHHH--HHHHHHHHHHHHHHHTTTSSCCH
T ss_pred HHHHHHHhCcCHHHeEEE-EEeCCCCccccCCccccc----CCcC--ccCCHHHH--HHHHHHHHHHhHHHHhcCCChHH
Confidence 999999999999999977 599999999999999999 9999 77665544 78999999999999999997765
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 245 LSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 245 ~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
++|.++++++.+++. ++++++|+|++++|+||+ +|+|||+||++| +|+++++ +++|+++|+++|++++.
T Consensus 224 -~~a~a~~~~~~ai~~--~~~~~~~~~~~~~g~~g~-~~~~~~~P~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~~ 293 (303)
T 1o6z_A 224 -GPARGVAHMVEAILH--DTGEVLPASVKLEGEFGH-EDTAFGVPVSLGSNGVEEIV-EWDLDDYEQDLMADAAE 293 (303)
T ss_dssp -HHHHHHHHHHHHHHT--TCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHh--CCCCEEEEEEecCCccCC-cceEEEEEEEEeCCeeEEec-CCCCCHHHHHHHHHHHH
Confidence 678999988887665 568999999999999999 899999999999 9999998 69999999999998764
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-59 Score=434.73 Aligned_cols=297 Identities=23% Similarity=0.304 Sum_probs=250.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|+++++||+|+|| |+||++++..|+.+++++ +|+|+|+++ +++++.++|+.|.. ++..+++++.+.+++++
T Consensus 3 m~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~-----ev~L~Di~~--~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~ 73 (318)
T 1y6j_A 3 MVKSRSKVAIIGA-GFVGASAAFTMALRQTAN-----ELVLIDVFK--EKAIGEAMDINHGL-PFMGQMSLYAGDYSDVK 73 (318)
T ss_dssp ----CCCEEEECC-SHHHHHHHHHHHHTTCSS-----EEEEECCC-----CCHHHHHHTTSC-CCTTCEEEC--CGGGGT
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCC-----EEEEEeCCh--HHHHHHHHHHHHhH-HhcCCeEEEECCHHHhC
Confidence 5556799999995 999999999999988865 999999974 67889999999986 44456655545688999
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehh
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRL 159 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~l 159 (320)
|||+||+++|.|++++++|.|++.+|+++++++++.+++++ |+++++++|||+|++|++++++ +++|++|++|. |.|
T Consensus 74 ~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~~~~~~k~-s~~p~~rviG~gt~L 151 (318)
T 1y6j_A 74 DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDIITYMIQKW-SGLPVGKVIGSGTVL 151 (318)
T ss_dssp TCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHHHHHHHHHH-HTCCTTTEEECTTHH
T ss_pred CCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCcHHHHHHHHHHH-cCCCHHHEeccCCch
Confidence 99999999999999999999999999999999999999998 8999999999999999999997 69999997665 999
Q ss_pred hHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccc--hhh---hhHHHHHHhhhhHH
Q 020875 160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD--AWL---NGEFITTVQQRGAA 234 (320)
Q Consensus 160 d~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~--~~~---~~~~~~~v~~~~~~ 234 (320)
|+.|+++++|+++|+++++|+++ ||||||++++|+||++++ +|+|+.+++.+. .|. .+++.+++++++++
T Consensus 152 d~~r~~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~e 226 (318)
T 1y6j_A 152 DSIRFRYLLSEKLGVDVKNVHGY-IIGEHGDSQLPLWSCTHI----AGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGAT 226 (318)
T ss_dssp HHHHHHHHHHTTTTCCTTTEECC-EEBCSSSSCEECCTTCEE----TTBCSCCC-----------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHeEEE-EecccCCcEeeeehhceE----CCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHh
Confidence 99999999999999999999986 599999999999999999 999998886542 243 57899999999999
Q ss_pred HHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcc
Q 020875 235 IIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFL 313 (320)
Q Consensus 235 i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l 313 (320)
|++.||.+++ ++|.++++++.+++. ++++++|+|++++|+||+ +|+|+|+||++| +|+++++ +++|+++|+++|
T Consensus 227 ii~~kg~t~~-~~a~a~~~~~~ai~~--~~~~~~~~~~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~-~~~L~~~e~~~l 301 (318)
T 1y6j_A 227 IIKNKGATYY-GIAVSINTIVETLLK--NQNTIRTVGTVINGMYGI-EDVAISLPSIVNSEGVQEVL-QFNLTPEEEEAL 301 (318)
T ss_dssp HHHHTSCCCH-HHHHHHHHHHHHHHH--TCCCEECCEEEECSBTTB-CSEEEECCEEEETTEEEECC-CCCCCHHHHHHH
T ss_pred HhhCCCccHH-HHHHHHHHHHHHHHc--CCCcEEEEEEeecCccCC-cceEEEEEEEEcCCeeEEEe-cCCCCHHHHHHH
Confidence 9999997765 458888888887666 478999999999999999 899999999999 9999998 599999999999
Q ss_pred cCccc
Q 020875 314 SPIAF 318 (320)
Q Consensus 314 ~~~~~ 318 (320)
++++.
T Consensus 302 ~~s~~ 306 (318)
T 1y6j_A 302 RFSAE 306 (318)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-59 Score=431.91 Aligned_cols=292 Identities=17% Similarity=0.222 Sum_probs=260.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+|| |+||++++..|+.+++.+ ||+|+|++ .+++++.++|+.|.. ++..++.++.+.+++++|||+|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~-----el~L~Di~--~~k~~g~a~dl~~~~-~~~~~~~v~~~~~~a~~~aD~V 71 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAR-----EVVLVDLD--RKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGARAV 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCS-----EEEEECSS--HHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC-----EEEEEeCC--hhHHHHHHHHHHHhH-hhcCCeEEEECCHHHhCCCCEE
Confidence 69999995 999999999999988765 99999997 478899999999976 3334444444568999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhHHHH
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNRA 164 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~~r~ 164 (320)
|+++|.|++++++|.+++.+|+++++++++.+++++ |+++++++|||+|++|++++++ +++|++|++|. |.||+.|+
T Consensus 72 ii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~-s~~p~~rviG~gt~LD~~R~ 149 (310)
T 2xxj_A 72 VLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAA-PEAVLLVATNPVDVMTQVAYAL-SGLPPGRVVGSGTILDTARF 149 (310)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HTCCGGGEEECTTHHHHHHH
T ss_pred EECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHH-cCCCHHHEEecCcchhHHHH
Confidence 999999999999999999999999999999999998 8999999999999999999997 69999997665 99999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccch--h---hhhHHHHHHhhhhHHHHhcC
Q 020875 165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA--W---LNGEFITTVQQRGAAIIKAR 239 (320)
Q Consensus 165 ~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~--~---~~~~~~~~v~~~~~~i~~~k 239 (320)
++++|+++|+++++|+++ ||||||++++|+||++++ +|+|+.+++.+.. | ..+++.+++++++++|++.|
T Consensus 150 ~~~la~~lgv~~~~v~~~-v~G~HG~t~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k 224 (310)
T 2xxj_A 150 RALLAEYLRVAPQSVHAY-VLGEHGDSEVLVWSSAQV----GGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK 224 (310)
T ss_dssp HHHHHHHHTSCGGGEEEE-EEBCSSTTCEEEEEEEEE----TTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHeEEE-EecccCCccccchhhccC----CCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhcc
Confidence 999999999999999986 699999999999999999 9999998864322 3 45789999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 240 KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
|.+++ ++|.++++++.+++. ++++++|+|++++|+||+ +|+|+|+||++| +|+++++ +++|+++|+++|++++.
T Consensus 225 g~t~~-~~a~a~~~~~~ai~~--~~~~~~~vs~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~-~~~L~~~e~~~l~~s~~ 299 (310)
T 2xxj_A 225 GATYY-GIGAGLARLVRAILT--DEKGVYTVSAFTPEVAGV-LEVSLSLPRILGAGGVAGTV-YPSLSPEERAALRRSAE 299 (310)
T ss_dssp SCCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEEEEEETTE-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred CCcHH-HHHHHHHHHHHHHHc--CCCCEEEEEEEEcCccCC-ccEEEEEEEEEeCCeeEEEc-CCCCCHHHHHHHHHHHH
Confidence 97765 458888888777655 578999999999999999 899999999999 9999998 59999999999998764
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-59 Score=430.44 Aligned_cols=289 Identities=20% Similarity=0.306 Sum_probs=259.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--CcceEEeCChhhhcCCCcE
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~al~~aDv 84 (320)
||+|+|| |++|+++++.|+.+++ + ||+|+|+++ +++++.++|+.|...+. ..+++.+++ +++++|||+
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l-~-----el~L~Di~~--~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aD~ 70 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGY-D-----DLLLIARTP--GKPQGEALDLAHAAAELGVDIRISGSNS-YEDMRGSDI 70 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTC-S-----CEEEECSST--THHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCC-C-----EEEEEcCCh--hhHHHHHHHHHHhhhhcCCCeEEEECCC-HHHhCCCCE
Confidence 7999995 9999999999998887 5 899999974 67889999999875332 345666666 489999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhHHH
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNR 163 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~~r 163 (320)
||+++|.|+++|++|.+++.+|+++++++++.+++++ |++++|++|||+|.+|++++++ +++|++|++|. |.||+.|
T Consensus 71 Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~-~~~p~~rviG~gt~LD~~R 148 (308)
T 2d4a_B 71 VLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNPVDAMTYVMYKK-TGFPRERVIGFSGILDSAR 148 (308)
T ss_dssp EEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCHHHHHHH
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHh-cCCChhhEEEecccchHHH
Confidence 9999999999999999999999999999999999998 9999999999999999999997 89999997777 9999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCccc
Q 020875 164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243 (320)
Q Consensus 164 ~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~~ 243 (320)
+++++|+++|+++.+|+++ ||||||++++|+||++++ +|+|+.+++.++.| +++.+++++++++|++.||.++
T Consensus 149 ~~~~la~~lgv~~~~v~~~-v~G~Hg~t~~p~~s~~~v----~g~~~~~~~~~~~~--~~~~~~v~~~g~eii~~kg~s~ 221 (308)
T 2d4a_B 149 MAYYISQKLGVSFKSVNAI-VLGMHGQKMFPVPRLSSV----GGVPLEHLMSKEEI--EEVVSETVNAGAKITELRGYSS 221 (308)
T ss_dssp HHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHSCHHHH--HHHHHHHHTHHHHHHHHHSSCC
T ss_pred HHHHHHHHhCcChhHeEEE-EEeccCCceeeeehhccC----CCEEHHHHcCHHHH--HHHHHHHHHhhHhhhhCCCCcc
Confidence 9999999999999999988 599999999999999999 99999998866654 7899999999999999999444
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 244 ~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
++++|.++++++.+++. ++++++|+|++++|+||+ +++|||+||++| +|+++++ +++|+++|+++|++++.
T Consensus 222 ~~~~a~a~~~~~~ai~~--~~~~v~~vs~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~-~~~L~~~e~~~l~~s~~ 293 (308)
T 2d4a_B 222 NYGPAAGLVLTVEAIKR--DSKRIYPYSLYLQGEYGY-NDIVAEVPAVIGKSGIERII-ELPLTEDEKRKFDEAVQ 293 (308)
T ss_dssp CHHHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCcEEEEEEEEcCccCC-CceEEEEEEEEcCCceEEec-CCCCCHHHHHHHHHHHH
Confidence 56778999888776655 578999999999999999 899999999999 9999998 69999999999998764
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-58 Score=425.20 Aligned_cols=293 Identities=22% Similarity=0.350 Sum_probs=253.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCc--ceEEeC-ChhhhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLK--GVVATT-DAVEACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~--~v~~~~-~~~~al~~a 82 (320)
|||+||||+|+||+++++.|+.+++.. +++|+|+.++.+++++.++|+.|....... +++..+ +++++++||
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~-----el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~ga 75 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMK-----DLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDES 75 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCC-----EEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTC
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCC-----EEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCC
Confidence 699999988999999999999888753 899999833345678889999986522213 344433 368999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDH 161 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~ 161 (320)
|+|||+||.+++++++|.+++.+|+++++++++.+++++ +++++++|||+|++|++++++ +++|++|++|. |.||+
T Consensus 76 D~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv~~~t~~~~k~-~~~p~~rviG~gt~LD~ 152 (313)
T 1hye_A 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPVDVMTYKALVD-SKFERNQVFGLGTHLDS 152 (313)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSHHHHHHHHHHH-HCCCTTSEEECTTHHHH
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcHHHHHHHHHHh-hCcChhcEEEeCccHHH
Confidence 999999999999999999999999999999999999997 789999999999999999997 89999998777 99999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhc--ccchhhhhHHHHHHhhhhHHHHhcC
Q 020875 162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV--KDDAWLNGEFITTVQQRGAAIIKAR 239 (320)
Q Consensus 162 ~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~i~~~k 239 (320)
.|+++++|+++|+++.+|+.+ ||||||++++|+||++++ +|+|+.+++ .++. .+++.+++++++++|++.|
T Consensus 153 ~r~~~~la~~lgv~~~~v~~~-v~G~Hg~~~~p~~s~~~v----~g~~~~~~~~~~~~~--~~~~~~~v~~~g~eii~~k 225 (313)
T 1hye_A 153 LRFKVAIAKFFGVHIDEVRTR-IIGEHGDSMVPLLSATSI----GGIPIQKFERFKELP--IDEIIEDVKTKGEQIIRLK 225 (313)
T ss_dssp HHHHHHHHHHHTCCGGGEECC-EEECSSTTEEECGGGCEE----TTEEGGGCGGGGGCC--HHHHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHhCcCHHHeEEE-EeeccCCcccceeecccc----CCEEHHHHhcCCHHH--HHHHHHHHHhccceeecCC
Confidence 999999999999999999987 599999999999999999 999999874 4443 4789999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCcc-CCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCcc
Q 020875 240 KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY-NVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIA 317 (320)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~y-g~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~ 317 (320)
|.+ ++++|.++++++.+++. ++++++|++++++|+| |+ +++|||+||++| +|+++++ +++|+++|+++|++++
T Consensus 226 gs~-~~~~a~a~~~~~~ai~~--~~~~~~~~~~~~~g~~~g~-~~~~~~~P~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~ 300 (313)
T 1hye_A 226 GGS-EFGPAAAILNVVRCIVN--NEKRLLTLSAYVDGEFDGI-RDVCIGVPVKIGRDGIEEVV-SIELDKDEIIAFRKSA 300 (313)
T ss_dssp -----CCHHHHHHHHHHHHHT--TCCEEEEEEEEEESSSSSC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHHHHHHc--CCCeEEEEEEeecceecCc-cceEEEEEEEEeCCeeEEec-CCCCCHHHHHHHHHHH
Confidence 854 56678999888877665 5689999999999999 99 899999999999 9999998 6999999999999876
Q ss_pred c
Q 020875 318 F 318 (320)
Q Consensus 318 ~ 318 (320)
.
T Consensus 301 ~ 301 (313)
T 1hye_A 301 E 301 (313)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-58 Score=420.30 Aligned_cols=284 Identities=23% Similarity=0.304 Sum_probs=243.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEe--CChhhhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT--TDAVEACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~--~~~~~al~~a 82 (320)
|||+|+||+|+||+++++.|.++ ++. .+++|+|+++ ++.|+++||+|.. ....++.. ++.+++++||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~-----~el~L~Di~~---~~~G~a~Dl~~~~--~~~~v~~~~~~~~~~~~~~a 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSG-----SELSLYDIAP---VTPGVAVDLSHIP--TAVKIKGFSGEDATPALEGA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT-----EEEEEECSST---THHHHHHHHHTSC--SSEEEEEECSSCCHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCC-----ceEEEEecCC---CchhHHHHhhCCC--CCceEEEecCCCcHHHhCCC
Confidence 69999998899999999999886 654 4999999974 4679999999974 22234332 3678999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH---HHHHCCCC-CCCcEEEeeh
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI---LKEFAPSI-PAKNITCLTR 158 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~---~~~~~~~~-~~~~i~~~t~ 158 (320)
|+||++||.|+++|++|.|++..|+++++++++.+.+++ |+++++++|||+|++|++ ++++ +++ |++|++|.|.
T Consensus 71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPvd~~t~~a~~~~k~-sg~~p~~rv~G~~~ 148 (312)
T 3hhp_A 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNTTVAIAAEVLKK-AGVYDKNKLFGVTT 148 (312)
T ss_dssp SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHH-TTCCCTTSEEECCH
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEecCcchhHHHHHHHHHHH-cCCCCcceEEEEec
Confidence 999999999999999999999999999999999999998 899999999999999999 7776 676 9999989999
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCC-CCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNH-SSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h-g~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
||+.|+++++|+++|+++++|+++ ||||| |+++||+||++ +|.|+. +++| ++|.++++++|++|++
T Consensus 149 LD~~R~~~~la~~lgv~~~~v~~~-V~G~Hsg~t~vp~~S~~------~g~~~~----~~~~--~~i~~~v~~~g~eIi~ 215 (312)
T 3hhp_A 149 LDIIRSNTFVAELKGKQPGEVEVP-VIGGHSGVTILPLLSQV------PGVSFT----EQEV--ADLTKRIQNAGTEVVE 215 (312)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCCC-EEECSSGGGEEECGGGC------TTCCCC----HHHH--HHHHHHHHTHHHHHHH
T ss_pred hhHHHHHHHHHHHhCcChhHccee-EEeccCCCceeeecccC------CCCCCC----HHHH--HHHHHHHHhhhHHHHh
Confidence 999999999999999999999977 59999 89999999997 245542 3444 7899999999999999
Q ss_pred cC--CccchHHHHHHHHHHHHHHH--hCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhc
Q 020875 238 AR--KLSSALSAASSACDHIRDWV--LGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSF 312 (320)
Q Consensus 238 ~k--g~~~~~~~a~a~~~~i~~~i--~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~ 312 (320)
.| +.++++++|.|+++++++++ +. ++++++|+| +++|+ |. .++|||+||++| +|++++++.++||++|+++
T Consensus 216 ~k~g~gst~~s~a~a~~~~~~ai~~~l~-~~~~v~~~s-~~~g~-g~-~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~ 291 (312)
T 3hhp_A 216 AKAGGGSATLSMGQAAARFGLSLVRALQ-GEQGVVECA-YVEGD-GQ-YARFFSQPLLLGKNGVEERKSIGTLSAFEQNA 291 (312)
T ss_dssp HTTTSCCCCHHHHHHHHHHHHHHHHHHT-TCSSCEEEE-EEECC-CS-SCSEEEEEEEEETTEEEEECCCCCCCHHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHcC-CCCceEEEE-EecCC-CC-cceEEEeEEEEeCCEEEEEcCCCCCCHHHHHH
Confidence 88 23456788999998877763 33 567899998 88876 43 678999999999 9999999433999999999
Q ss_pred ccCccc
Q 020875 313 LSPIAF 318 (320)
Q Consensus 313 l~~~~~ 318 (320)
|+.++.
T Consensus 292 l~~s~~ 297 (312)
T 3hhp_A 292 LEGMLD 297 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-58 Score=422.16 Aligned_cols=298 Identities=20% Similarity=0.276 Sum_probs=262.7
Q ss_pred CCCC-CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc
Q 020875 1 MAKE-PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~-~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al 79 (320)
|+++ ++||+|+|| |.+|+++++.|+.+++.+ +|+|+|+++ +++++.++|+.|.......+++++++.++++
T Consensus 1 m~~~~~~kI~IIGa-G~vG~sla~~l~~~~~~~-----ev~l~Di~~--~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al 72 (316)
T 1ldn_A 1 MKNNGGARVVVIGA-GFVGASYVFALMNQGIAD-----EIVLIDANE--SKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC 72 (316)
T ss_dssp CTTTTSCEEEEECC-SHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHHHTTSSSSCCEEEECCGGGT
T ss_pred CCCCCCCEEEEECc-CHHHHHHHHHHHhCCCCC-----EEEEEeCCc--chHHHHHhhHHHHhhhcCCCeEEEcCcHHHh
Confidence 7764 579999995 999999999999888754 999999974 5788889999987533333555555668899
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-eh
Q 020875 80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TR 158 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ 158 (320)
+|||+||++++.+++++++|.+++.+|.++++++++.+++++ |+++++++|||+|.+|++++++ +++|++|++|. |.
T Consensus 73 ~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv~~~~~~~~~~-s~~p~~rviG~gt~ 150 (316)
T 1ldn_A 73 RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILTYATWKF-SGLPHERVIGSGTI 150 (316)
T ss_dssp TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHH-HTCCGGGEEECTTH
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCchHHHHHHHHHH-hCCCHHHEEecccc
Confidence 999999999999999999999999999999999999999998 8999999999999999999997 69999997666 99
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccch-hh---hhHHHHHHhhhhHH
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA-WL---NGEFITTVQQRGAA 234 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~-~~---~~~~~~~v~~~~~~ 234 (320)
||+.|+++++|+++|+++.+|+++ ||||||++++|+||++++ +|+|+.+++.+.. |. .+++.+++++++++
T Consensus 151 lD~~r~~~~la~~l~v~~~~v~~~-v~G~HG~~~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~e 225 (316)
T 1ldn_A 151 LDTARFRFLLGEYFSVAPQNVHAY-IIGEHGDTELPVWSQAYI----GVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQ 225 (316)
T ss_dssp HHHHHHHHHHHHHHTSCGGGEEEE-EEBCSSTTCEEEEEEEEE----TTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHeEEE-EecccCCceeeeehhccC----CCEEHHHHhhccccCCHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999986 699999999999999999 9999998876543 33 37888999999999
Q ss_pred HHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcc
Q 020875 235 IIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFL 313 (320)
Q Consensus 235 i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l 313 (320)
|++.||.+++ ++|.++++++.+++. ++++++|+|++++|+||+ +++|+|+||++| +|+++++ +++|+++|+++|
T Consensus 226 ii~~kg~~~~-~~a~a~~~~~~ai~~--~~~~~~~~~~~~~g~yg~-~~~~~~vP~~ig~~Gv~~i~-~~~l~~~e~~~l 300 (316)
T 1ldn_A 226 IIEKKGATYY-GIAMGLARVTRAILH--NENAILTVSAYLDGLYGE-RDVYIGVPAVINRNGIREVI-EIELNDDEKNRF 300 (316)
T ss_dssp HHHHHSCCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEEEESTTSC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHH
T ss_pred HHhccCCcHH-HHHHHHHHHHHHHHh--CCCcEEEEEEEecCccCC-cceEEEEEEEEeCCeeEEEc-cCCCCHHHHHHH
Confidence 9999998765 557888888877655 578999999999999999 899999999999 9999999 599999999999
Q ss_pred cCccc
Q 020875 314 SPIAF 318 (320)
Q Consensus 314 ~~~~~ 318 (320)
++++.
T Consensus 301 ~~s~~ 305 (316)
T 1ldn_A 301 HHSAA 305 (316)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-59 Score=430.80 Aligned_cols=279 Identities=19% Similarity=0.240 Sum_probs=246.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~a 82 (320)
+.+||+|+|| |.||+++++.|+.+++++ +++|+|++ ++++++.++||+|... ....++..++++ ++++||
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~-----ev~L~Di~--~~~~~g~a~DL~~~~~~~~~~~i~~t~d~-~~~~da 90 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLAD-----EVALVDVM--EDKLKGEMMDLEHGSLFLHTAKIVSGKDY-SVSAGS 90 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCS-----EEEEECSC--HHHHHHHHHHHHHHGGGSCCSEEEEESSS-CSCSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCC-----eEEEEECC--HHHHHHHHHHhhhhhhcccCCeEEEcCCH-HHhCCC
Confidence 4589999995 999999999999999875 99999996 4778999999999742 334556666664 669999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEE-EeehhhH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT-CLTRLDH 161 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~-~~t~ld~ 161 (320)
|+||++||.|+++|++|+|++.+|+++++++++.+.+++ |+++++++|||+|++|++++++ +++|++|++ .+|.||+
T Consensus 91 DiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvtNPvdi~t~~~~k~-sg~p~~rViG~gt~LDs 168 (330)
T 3ldh_A 91 KLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHPELGTDKNKQDWKL-SGLPMHRIIGSGCNLDS 168 (330)
T ss_dssp SEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HCCCGGGEECCTTHHHH
T ss_pred CEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCCCccHHHHHHHHHH-hCCCHHHeecccCchhH
Confidence 999999999999999999999999999999999999998 8999999999999999999997 699999965 4589999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCc
Q 020875 162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKL 241 (320)
Q Consensus 162 ~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~ 241 (320)
.|+++++|+++|++|.+|+++ ||||||+++||+||+ . | .+++.++++++|++|++.||.
T Consensus 169 ~R~~~~lA~~lgv~~~~V~~~-V~G~Hg~t~vp~~S~-~------------------~-~~~~~~~v~~~g~eii~~kg~ 227 (330)
T 3ldh_A 169 ARFRYLMGERLGVHSCLVIGW-VIGQHGDSVPSVWSG-M------------------W-DAKLHKDVVDSAYEVIKLKGY 227 (330)
T ss_dssp HHHHHHHHHHHTSCTTTCCEE-ECSSSSTTCCEEEEE-E------------------E-ETTEEHHHHHCCCTTSTTCHH
T ss_pred HHHHHHHHHHhCCCHHHeEEE-EEcCCCCceeeechh-h------------------H-HHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999997 599999999999997 1 1 256788899999999999997
Q ss_pred cchHHHHH-----------------HHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEeCCeEE--EecC
Q 020875 242 SSALSAAS-----------------SACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWT--IVQG 302 (320)
Q Consensus 242 ~~~~~~a~-----------------a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~~G~~~--~~~~ 302 (320)
|+| ++|. ++++++ ++++. ++++++|+|++++|+||+++++|||+||++|+|+++ ++ +
T Consensus 228 t~~-a~a~~~~~~~~~~~~~~~~~~a~~~~~-~ail~-~~~~v~~~s~~~~g~yg~~~~v~~s~P~~lg~Gv~~~~iv-~ 303 (330)
T 3ldh_A 228 TSW-AIGLVVSNPVDVLTYVAWKGCSVADLA-QTIMK-DLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNNGISHCNIV-K 303 (330)
T ss_dssp HHH-HHHHTTHHHHTTSSSCSCTHHHHHHHH-HHHHH-TCCEEECCBCCCSSSSSCCSCCCCBCCEEEBTTBCTTCCC-C
T ss_pred cce-eeeeeccCccchhhhhhhHHHHHHHHH-HHHHc-CCCceEEEEeecCCccCCCCceEEEEEEEECCcEEEccee-c
Confidence 765 5567 777655 45664 688999999999999999779999999999999999 98 5
Q ss_pred CCCChhhhhcccCccc
Q 020875 303 TDAILYPMSFLSPIAF 318 (320)
Q Consensus 303 ~~L~~~E~~~l~~~~~ 318 (320)
++|+++||++|+.+|.
T Consensus 304 ~~L~~~E~~~l~~s~~ 319 (330)
T 3ldh_A 304 MKLKPDEEQQLQKSAT 319 (330)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998764
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-57 Score=417.01 Aligned_cols=289 Identities=21% Similarity=0.321 Sum_probs=251.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--CcceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~al~~aD 83 (320)
+||+|+|| |++|++++..|+..+++ +|+|+|+++ +++++.++|+.|...+. ..+++.+++. ++++|||
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~------~v~L~Di~~--~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD 72 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELG------DIVLLDIVE--GVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSD 72 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCS------EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC------eEEEEeCCc--cHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCC
Confidence 69999995 99999999999998864 699999975 67888889999864322 3456666675 8999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~~ 162 (320)
+||+++|.|++++++|.+++.+|+++++++++.+++++ |+++++++|||+|++|++++++ +++|++|++|. |.||+.
T Consensus 73 ~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~t~~~~~~-~~~~~~rviG~gt~LD~~ 150 (309)
T 1ur5_A 73 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAMTYLAAEV-SGFPKERVIGQAGVLDAA 150 (309)
T ss_dssp EEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEECCHHHHHH
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHHHHHHHHH-cCCCHHHEEECCcchHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999997 89999998777 999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh--cCC
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK--ARK 240 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~--~kg 240 (320)
|+++++|+++|+++.+|+.+ ||||||++++|+||++++ +|+|+.+++.++.| +++.+++++++++|++ .||
T Consensus 151 r~~~~la~~lgv~~~~v~~~-v~G~Hg~t~~p~~s~~~v----~g~~~~~~~~~~~~--~~~~~~v~~~g~eii~~~~kg 223 (309)
T 1ur5_A 151 RYRTFIAMEAGVSVEDVQAM-LMGGHGDEMVPLPRFSCI----SGIPVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTG 223 (309)
T ss_dssp HHHHHHHHHHTCCGGGEEEC-CEECSGGGEECCGGGEEE----TTEEGGGTSCHHHH--HHHHHHHHTHHHHHHHHHSSC
T ss_pred HHHHHHHHHhCCChhheeEE-EecCcCCceeeeeeccee----CCEeHHHHcCHhHH--HHHHHHHHhhhHHhhhhccCC
Confidence 99999999999999999987 599999999999999999 99999998766644 7899999999999999 688
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 241 ~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
.+ ++++|.++++++.+++. ++++++|+|++++|+||+ +++|||+||++| +|+++++ +++|+++|+++|++++.
T Consensus 224 s~-~~~~a~a~~~~~~ai~~--~~~~~~~~~~~~~g~~g~-~~~~~~vP~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~~ 297 (309)
T 1ur5_A 224 SA-YYAPAAATAQMVEAVLK--DKKRVMPVAAYLTGQYGL-NDIYFGVPVILGAGGVEKIL-ELPLNEEEMALLNASAK 297 (309)
T ss_dssp CC-CHHHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHHHc--CCCcEEEEEEEecCccCC-cceEEEEEEEEeCCceEEec-CCCCCHHHHHHHHHHHH
Confidence 44 56778999887776654 578999999999999999 899999999999 9999998 69999999999998764
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-56 Score=411.47 Aligned_cols=312 Identities=52% Similarity=0.826 Sum_probs=271.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|+ ++|||+||||+||||++++..|+.+|+++.++..+|+++|+++..+++.+..+|+.|...++..++..+.+++++++
T Consensus 1 m~-~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~ 79 (327)
T 1y7t_A 1 MK-APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK 79 (327)
T ss_dssp CC-CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT
T ss_pred CC-CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhC
Confidence 55 45799999999999999999999888753333348999998643345677788998864444467777778899999
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhh
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld 160 (320)
++|+|||+||.++.++++|.+++..|+.+++++++++++++.|+++++++|||++.++++..+..+++|+.++|+.|.+|
T Consensus 80 ~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~tkl~ 159 (327)
T 1y7t_A 80 DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLD 159 (327)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHH
T ss_pred CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheeccchHH
Confidence 99999999999988888999999999999999999999985367899999999999999888753378888999999999
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCC
Q 020875 161 HNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240 (320)
Q Consensus 161 ~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg 240 (320)
+.|+++.+++++|+++..++.++|||+||++++|.|+++.+ +|+|+.+++. +.|..+++.++++++|++|++.||
T Consensus 160 ~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~----~g~~l~~~~~-~~~~~~~~~~~v~~~g~~ii~~kg 234 (327)
T 1y7t_A 160 HNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEV----DGRPALELVD-MEWYEKVFIPTVAQRGAAIIQARG 234 (327)
T ss_dssp HHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTSC-HHHHHHTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeee----CCeeHHHhcc-chhHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999877899999999999999999 9999998764 356668999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEeCCeEEEecCCCCChhhhhcccCccc
Q 020875 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 241 ~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
.++++++|.++++++.+|+.+.++++++|+|++++|+||+|+|+|||+||++++|++++++.++|+++|+++|++++.
T Consensus 235 ~~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~g~yg~~~~~~~~~P~~i~~G~~~i~~~~~l~~~e~~~l~~s~~ 312 (327)
T 1y7t_A 235 ASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQ 312 (327)
T ss_dssp SCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHcCCCCCeEEEEEEEecCccCCCCCeEEEEEEEEcCCeEEecCCCCCCHHHHHHHHHHHH
Confidence 888888888898888877764226899999999999999999999999999999999998559999999999998764
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-55 Score=406.86 Aligned_cols=294 Identities=19% Similarity=0.279 Sum_probs=259.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a 78 (320)
|+ +++||+|+|| |.+|++++..|+..+++ +|+|+|+++ +++++...|+.+...+ ...+++.++++ ++
T Consensus 1 m~-~~~kI~VIGa-G~vG~~ia~~la~~g~~------~v~L~Di~~--~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~a 69 (322)
T 1t2d_A 1 MA-PKAKIVLVGS-GMIGGVMATLIVQKNLG------DVVLFDIVK--NMPHGKALDTSHTNVMAYSNCKVSGSNTY-DD 69 (322)
T ss_dssp -C-CCCEEEEECC-SHHHHHHHHHHHHTTCC------EEEEECSSS--SHHHHHHHHHHTHHHHHTCCCCEEEECCG-GG
T ss_pred CC-CCCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEeCCH--HHHHHHHHHHHhhhhhcCCCcEEEECCCH-HH
Confidence 55 4579999995 99999999999998874 699999975 6788888899886422 23467777776 89
Q ss_pred cCCCcEEEEeCCCCCCCCCC-----HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE
Q 020875 79 CTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~~-----r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i 153 (320)
++|||+||+++|.|++++++ |.+++.+|+++++++++.+++++ |++++|++|||++++|+++++. +++|++|+
T Consensus 70 l~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~t~~~~~~-~g~~~~rv 147 (322)
T 1t2d_A 70 LAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQH-SGVPKNKI 147 (322)
T ss_dssp GTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHH-HCCCGGGE
T ss_pred hCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHHHHHHHHh-cCCChHHE
Confidence 99999999999999999988 99999999999999999999999 8999999999999999999986 78999997
Q ss_pred EEe-ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh----hhhHHHHHH
Q 020875 154 TCL-TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW----LNGEFITTV 228 (320)
Q Consensus 154 ~~~-t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~v 228 (320)
+|. |.||++|+++++|+++|+++++|+.+ ||||||++++|+||++++ +|+|+.+++.++ | ..+++.+++
T Consensus 148 iG~gt~ld~~R~~~~la~~lgv~~~~v~~~-v~G~HG~~~~p~~s~~~v----~g~~~~~~~~~~-~~~~~~~~~~~~~v 221 (322)
T 1t2d_A 148 IGLGGVLDTSRLKYYISQKLNVCPRDVNAH-IVGAHGNKMVLLKRYITV----GGIPLQEFINNK-LISDAELEAIFDRT 221 (322)
T ss_dssp EECCHHHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTT-SSCHHHHHHHHHHH
T ss_pred EeccCcccHHHHHHHHHHHhCCCHHHeEEE-EEcCCCCcEEeeHHHceE----CcEeHHHhcccc-CCCHHHHHHHHHHH
Confidence 666 89999999999999999999999988 599999999999999999 999999876432 2 247788999
Q ss_pred hhhhHHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCCh
Q 020875 229 QQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAIL 307 (320)
Q Consensus 229 ~~~~~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~ 307 (320)
++++++|++.||.+ ++++|.++++++.+++. ++++++|+|++++|+||+ +++|||+||++| +|+++++ +++|++
T Consensus 222 ~~~g~eii~~kgs~-~~~~a~a~~~~~~ai~~--~~~~v~~~s~~~~g~~g~-~~~~~~vP~~ig~~Gv~~i~-~~~l~~ 296 (322)
T 1t2d_A 222 VNTALEIVNLHASP-YVAPAAAIIEMAESYLK--DLKKVLICSTLLEGQYGH-SDIFGGTPVVLGANGVEQVI-ELQLNS 296 (322)
T ss_dssp HTHHHHHHHHTSSC-CHHHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCH
T ss_pred HHHHHHHHhccCch-HHHHHHHHHHHHHHHHh--CCCCEEEEEEEecCccCC-CceEEEEEEEEeCCeeEEeC-CCCCCH
Confidence 99999999999954 56778999988877665 578999999999999999 899999999999 9999998 699999
Q ss_pred hhhhcccCccc
Q 020875 308 YPMSFLSPIAF 318 (320)
Q Consensus 308 ~E~~~l~~~~~ 318 (320)
+|+++|++++.
T Consensus 297 ~e~~~l~~s~~ 307 (322)
T 1t2d_A 297 EEKAKFDEAIA 307 (322)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998763
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-55 Score=405.20 Aligned_cols=296 Identities=19% Similarity=0.286 Sum_probs=259.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a 78 (320)
|..++|||+|+|| |.+|++++..|+..+++ +|+|+|+++ +++++...|+.|...+ ...+++.++++.++
T Consensus 5 ~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~------~V~L~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea 75 (331)
T 1pzg_A 5 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA------DVVLYDVVK--GMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA 75 (331)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC------EEEEECSSS--SHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEECCh--hHHHHHHHHHHhhhhccCCCCEEEEeCCHHHH
Confidence 5556789999995 99999999999998874 699999975 6788777888876422 23567778888779
Q ss_pred cCCCcEEEEeCCCCCCCCC-----CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE
Q 020875 79 CTGVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~-----~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i 153 (320)
++|||+||+++|.|+++++ +|.+++.+|+++++++++.+++++ |++++|++|||++++|+++++. +++|++|+
T Consensus 76 ~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~t~~~~~~-~~~~~~rv 153 (331)
T 1pzg_A 76 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMVKVMCEA-SGVPTNMI 153 (331)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGE
T ss_pred hCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHHHHHHHHh-cCCChhcE
Confidence 9999999999999999998 999999999999999999999999 8999999999999999999986 78999997
Q ss_pred EEe-ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh----hhhHHHHHH
Q 020875 154 TCL-TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW----LNGEFITTV 228 (320)
Q Consensus 154 ~~~-t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~v 228 (320)
+|. |.||+.|+++++|+++|+++.+|+.+ |||+||+++||+||++++ +|+|+.+++.++ | ..+++.+++
T Consensus 154 iG~gt~LD~~R~~~~la~~lgv~~~~v~~~-v~G~Hg~~~~p~~s~~~v----~G~~~~~~~~~~-~~~~~~~~~~~~~~ 227 (331)
T 1pzg_A 154 CGMACMLDSGRFRRYVADALSVSPRDVQAT-VIGTHGDCMVPLVRYITV----NGYPIQKFIKDG-VVTEKQLEEIAEHT 227 (331)
T ss_dssp EECCHHHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTT-SSCHHHHHHHHHHH
T ss_pred EeccchHHHHHHHHHHHHHhCCCHHHceEE-EecCCCCCEeeeeecceE----CCEEHHHHhhcc-cCCHHHHHHHHHHH
Confidence 666 89999999999999999999999987 599999999999999999 999999886431 2 246788889
Q ss_pred hhhhHHHHh--cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCC
Q 020875 229 QQRGAAIIK--ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDA 305 (320)
Q Consensus 229 ~~~~~~i~~--~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L 305 (320)
++++++|++ .||. +++++|.++++++.+++. ++++++|++++++|+||+ +++|+|+||+++ +|+++++ +++|
T Consensus 228 ~~~g~eii~~~~kgs-t~~~~a~a~~~ii~ai~~--~~~~~~~~~v~~~G~~g~-~~~~~~vP~~vg~~Gv~~i~-~~~L 302 (331)
T 1pzg_A 228 KVSGGEIVRFLGQGS-AYYAPAASAVAMATSFLN--DEKRVIPCSVYCNGEYGL-KDMFIGLPAVIGGAGIERVI-ELEL 302 (331)
T ss_dssp HHHHHHHHHHHSSSC-CCHHHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCC
T ss_pred HhccHHHHHhhcCCC-ccchHHHHHHHHHHHHHh--CCCcEEEEEEEecCccCC-CceEEEEEEEEeCCeeEEec-CCCC
Confidence 999999999 6774 456778899887776554 578999999999999999 899999999999 9999998 6999
Q ss_pred ChhhhhcccCccc
Q 020875 306 ILYPMSFLSPIAF 318 (320)
Q Consensus 306 ~~~E~~~l~~~~~ 318 (320)
+++|+++|++++.
T Consensus 303 ~~~e~~~l~~s~~ 315 (331)
T 1pzg_A 303 NEEEKKQFQKSVD 315 (331)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998764
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-54 Score=396.18 Aligned_cols=286 Identities=17% Similarity=0.258 Sum_probs=227.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+|| |.+|++++..|+..|+.+ +|+|+|+++ +++++.++|+.|.. +......++.+.+++++|||+|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~-----eV~L~D~~~--~~~~~~~~~l~~~~-~~~~~~~i~~~~~~a~~~aDvV 71 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCS-----ELVLVDRDE--DRAQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQVV 71 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCS-----EEEEECSSH--HHHHHHHHHHTTSC-CTTSCCEEEEECGGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC-----EEEEEeCCH--HHHHHHHHhhhhhh-hhcCCeEEEECCHHHhCCCCEE
Confidence 69999995 999999999999988764 899999974 67788889998865 3323333332346899999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhHHHH
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHNRA 164 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~~r~ 164 (320)
|++++.|++++++|.|++.+|+++++++++.+++++ |+++++++|||++++++++++.. |++|++|. |.||+.|+
T Consensus 72 Ii~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~---~~~rviG~gt~Ld~~r~ 147 (304)
T 2v6b_A 72 ILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA---PGQPVIGSGTVLDSARF 147 (304)
T ss_dssp EECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS---CSSCEEECTTHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC---ChhcEEeCCcCchHHHH
Confidence 999999999999999999999999999999999998 89999999999999999999873 78887555 99999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccch--h---hhhHHHHHHhhhhHHHHhcC
Q 020875 165 LGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA--W---LNGEFITTVQQRGAAIIKAR 239 (320)
Q Consensus 165 ~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~--~---~~~~~~~~v~~~~~~i~~~k 239 (320)
++++|+++|+++.+|+.+ ||||||++++|+||++++ +|+|+.+++.+.. | ..+++.+++++++++|++.|
T Consensus 148 ~~~la~~l~v~~~~v~~~-v~G~Hg~~~~p~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~k 222 (304)
T 2v6b_A 148 RHLMAQHAGVDGTHAHGY-VLGEHGDSEVLAWSSAMV----AGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGK 222 (304)
T ss_dssp HHHHHHHHTSCGGGEECC-EEESSSTTEEECGGGCEE----TTEEHHHHHHHHTCCCSHHHHHHHHHHHTC---------
T ss_pred HHHHHHHhCcCHHHceEE-EecCCCCceeeehhHccC----CCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999996 599999999999999999 9999998865432 4 35789999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 240 KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
|.+++ ++|.++++++.+++. ++++++|+|++++| || +|||+||++| +|+++++ +++|+++|+++|++++.
T Consensus 223 g~t~~-~~a~a~~~~~~ai~~--~~~~~~~~~~~~~g-yg----~~~~~P~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~~ 293 (304)
T 2v6b_A 223 RATYY-GIGAALARITEAVLR--DRRAVLTVSAPTPE-YG----VSLSLPRVVGRQGVLSTL-HPKLTGDEQQKLEQSAG 293 (304)
T ss_dssp --CCH-HHHHHHHHHHHHHHT--TCCEEEEEEEEETT-TT----EEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred CCcHH-HHHHHHHHHHHHHHh--CCCcEEEEEEEECC-cC----cEEEEEEEEeCCeeEEEc-CCCCCHHHHHHHHHHHH
Confidence 97765 458889888877665 57899999999999 96 8999999999 9999999 59999999999998764
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-54 Score=393.52 Aligned_cols=278 Identities=18% Similarity=0.227 Sum_probs=236.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+++||+|+| +|.+|+.+++.|+.+++.+ +|+|+|+++ + +.+.++|+.+... .+++.++++ ++++|||
T Consensus 13 ~~~kV~ViG-aG~vG~~~a~~l~~~g~~~-----ev~L~Di~~--~-~~g~a~dl~~~~~---~~i~~t~d~-~~l~~aD 79 (303)
T 2i6t_A 13 TVNKITVVG-GGELGIACTLAISAKGIAD-----RLVLLDLSE--G-TKGATMDLEIFNL---PNVEISKDL-SASAHSK 79 (303)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECCC--------CHHHHHHHTC---TTEEEESCG-GGGTTCS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEcCCc--c-hHHHHHHHhhhcC---CCeEEeCCH-HHHCCCC
Confidence 357999999 5999999999999988764 999999975 3 6778889987532 367777775 8999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~~ 162 (320)
+||+++|.+ +++++|.|++.+|+++++++++.+++++ |++++|++|||+|++|++++++ +++|++|++|. |.||+.
T Consensus 80 ~Vi~aag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~-~~~p~~rviG~gt~Ld~~ 156 (303)
T 2i6t_A 80 VVIFTVNSL-GSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKL-STFPANRVIGIGCNLDSQ 156 (303)
T ss_dssp EEEECCCC-----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHHHHH
T ss_pred EEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHh-cCCCHHHeeCCCCCchHH
Confidence 999999996 7899999999999999999999999999 9999999999999999999997 89999998777 999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHhcCCcc
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~kg~~ 242 (320)
|+++++|+++|+++.+|+.+ ||||||++++|+||+..- |..+++.+++++++++|++.||.
T Consensus 157 R~~~~la~~lgv~~~~v~~~-v~G~Hg~s~~p~~s~~~~-----------------~~~~~~~~~~~~~g~eii~~kGs- 217 (303)
T 2i6t_A 157 RLQYIITNVLKAQTSGKEVW-VIGEQGEDKVLTWSGQEE-----------------VVSHTSQVQLSNRAMELLRVKGQ- 217 (303)
T ss_dssp HHHHHHHHTSCCTTGGGGEE-EEBSCSSSCEEEEBCSSC-----------------CCCHHHHHHHHHHHHTTSSSCCC-
T ss_pred HHHHHHHHHcCCChHHeEEE-EecCCCCCcccccccccc-----------------ccHHHHHHHHHHHHHHHHHccCc-
Confidence 99999999999999999987 489999999999998421 22367888899999999999984
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 243 ~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
+++++|.++++++.+++. ++++++|++++++|+||+|+++|||+||++| +|++++++...|+++|+++|+.+|.
T Consensus 218 t~~~~a~a~~~i~~ai~~--~~~~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~ 292 (303)
T 2i6t_A 218 RSWSVGLSVADMVDSIVN--NKKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSAS 292 (303)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHc--CCCcEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHH
Confidence 466788999988776554 5689999999999999998899999999999 9999998433899999999998764
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-54 Score=399.41 Aligned_cols=291 Identities=23% Similarity=0.324 Sum_probs=255.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~al~~a 82 (320)
++||+|+|| |.+|++++..|+..|++ +|+|+|+++ +++++..+|+.+...+ ...+++.++++ ++++||
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~------~V~L~Di~~--~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~a 83 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLG------DVYMFDIIE--GVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNS 83 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCC------EEEEECSST--THHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEECCH--HHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCC
Confidence 369999995 99999999999998874 699999975 6788878888876432 23467777776 899999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDH 161 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~ 161 (320)
|+||+++|.|++++++|.|++.+|+++++++++.+++++ |++++|++|||++++|+++++. +++|++|++|. |.||+
T Consensus 84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~-~~~~~~rviG~~t~Ld~ 161 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAMVYYFKEK-SGIPANKVCGMSGVLDS 161 (328)
T ss_dssp SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGEEESCHHHHH
T ss_pred CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHh-cCCChhhEEEeCcHHHH
Confidence 999999999999999999999999999999999999999 8999999999999999999885 78999998777 69999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh----hhhHHHHHHhhhhHHHHh
Q 020875 162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW----LNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 162 ~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~i~~ 237 (320)
+|+++++|+++|+++.+|+.+ ||||||++++|+||++++ +|+|+.+++.+ .| ..+++.++++++|++|++
T Consensus 162 ~R~~~~la~~lgv~~~~v~~~-v~G~Hg~t~~p~~s~~~v----~G~~~~~~~~~-~~~~~~~~~~~~~~v~~~g~eii~ 235 (328)
T 2hjr_A 162 ARFRCNLSRALGVKPSDVSAI-VVGGHGDEMIPLTSSVTI----GGILLSDFVEQ-GKITHSQINEIIKKTAFGGGEIVE 235 (328)
T ss_dssp HHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHT-TSSCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHeeEE-EecCCCCceeeeeeeceE----CCEEHHHHhhc-cCCCHHHHHHHHHHHHhhHHHHHh
Confidence 999999999999999999988 599999999999999999 99999988644 23 236788889999999999
Q ss_pred --cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 238 --ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 238 --~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
.||.+ ++++|.++++++.+++. ++++++|++++++|+||+ +|+|+|+||+++ +|+++++ +++|+++|+++|+
T Consensus 236 ~~~~gs~-~~~~a~a~~~i~~ai~~--~~~~v~~~~v~~~G~~g~-~~~~~~vP~~ig~~Gv~~i~-~~~L~~~e~~~l~ 310 (328)
T 2hjr_A 236 LLKTGSA-FYAPAASAVAMAQAYLK--DSKSVLVCSTYLTGQYNV-NNLFVGVPVVIGKNGIEDVV-IVNLSDDEKSLFS 310 (328)
T ss_dssp HHSSCCC-CHHHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred hhCCCch-HHHHHHHHHHHHHHHHc--CCCcEEEEEEeecCccCC-CceEEEEEEEEeCCeeEEec-CCCCCHHHHHHHH
Confidence 57654 45778899887776554 568999999999999999 899999999999 9999998 6999999999998
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
+++.
T Consensus 311 ~s~~ 314 (328)
T 2hjr_A 311 KSVE 314 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-54 Score=394.09 Aligned_cols=290 Identities=22% Similarity=0.349 Sum_probs=254.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~al~~aD 83 (320)
|||+|+|| |.+|++++..|+.++.. .+|+|+|+++ +++++..+|+.+...+ ...+++.+++. +++++||
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g-----~~V~l~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~~l~~aD 71 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLA-----RELVLLDVVE--GIPQGKALDMYESGPVGLFDTKVTGSNDY-ADTANSD 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCC-----SEEEEECSSS--SHHHHHHHHHHTTHHHHTCCCEEEEESCG-GGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCC-----CEEEEEeCCh--hHHHHHHHhHHhhhhcccCCcEEEECCCH-HHHCCCC
Confidence 69999995 99999999999886432 2899999975 5677777788765321 12356666675 4599999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehhhHH
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRLDHN 162 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~ld~~ 162 (320)
+||++++.|++++++|.+++.+|+++++++++.+++++ |+++++++|||++.++++++++ +++|++|++|. |.||+.
T Consensus 72 vViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~~~~~~~~~~~-~~~~~~rviG~gt~ld~~ 149 (310)
T 1guz_A 72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDIMTHVAWVR-SGLPKERVIGMAGVLDAA 149 (310)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHHHHHHHHHH-HCSCGGGEEEECHHHHHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCchHHHHHHHHHh-cCCChHHEEECCCchHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999986 79999997666 999999
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh--cCC
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK--ARK 240 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~--~kg 240 (320)
|+++++|+++|+++.+|+.+ ||||||++++|+||++++ +|+|+.+++.++.| +++.+++++++++|++ .||
T Consensus 150 r~~~~la~~l~v~~~~v~~~-v~G~Hg~~~~p~~s~~~v----~g~~~~~~~~~~~~--~~~~~~v~~~g~~ii~~~~kg 222 (310)
T 1guz_A 150 RFRSFIAMELGVSMQDINAC-VLGGHGDAMVPVVKYTTV----AGIPISDLLPAETI--DKLVERTRNGGAEIVEHLKQG 222 (310)
T ss_dssp HHHHHHHHHHTCCGGGEECC-EEECSGGGEEECGGGCEE----TTEEHHHHSCHHHH--HHHHHHHHTHHHHHHHHHSSS
T ss_pred HHHHHHHHHhCCCHHHeEEE-EEcccCCcEeeeeecccC----CCEEHHHHCCHHHH--HHHHHHHHHhHHHHHhhcCCC
Confidence 99999999999999999987 599999999999999999 99999998866644 7899999999999999 688
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 241 ~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
. +++++|.++++++.+++. ++++++|+|++++|+||+ +|+|||+||++| +|+++++ +++|+++|+++|++++.
T Consensus 223 s-~~~~~a~a~~~~~~ai~~--~~~~~~~~~~~~~g~~g~-~~~~~~~P~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~~ 296 (310)
T 1guz_A 223 S-AFYAPASSVVEMVESIVL--DRKRVLPCAVGLEGQYGI-DKTFVGVPVKLGRNGVEQIY-EINLDQADLDLLQKSAK 296 (310)
T ss_dssp C-CCHHHHHHHHHHHHHHHT--TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHHHc--CCCcEEEEEEeecCccCC-cceEEEEEEEEeCCeeEEEc-CCCCCHHHHHHHHHHHH
Confidence 4 456778999988776655 568999999999999999 899999999999 9999998 69999999999998764
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=393.94 Aligned_cols=284 Identities=22% Similarity=0.315 Sum_probs=242.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEe---CChhhhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT---TDAVEACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~---~~~~~al~~a 82 (320)
|||+|+||+|+||++++..|+.+++.. +|+|+|+++ .++.++||.|...+ .+++.+ +++.++++||
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~-----ev~L~Di~~----~~~~a~dL~~~~~~--~~l~~~~~t~d~~~a~~~a 69 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVS-----RLTLYDIAH----TPGVAADLSHIETR--ATVKGYLGPEQLPDCLKGC 69 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCS-----EEEEEESSS----HHHHHHHHTTSSSS--CEEEEEESGGGHHHHHTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCc-----EEEEEeCCc----cHHHHHHHhccCcC--ceEEEecCCCCHHHHhCCC
Confidence 699999977999999999999888643 899999974 57788999987633 245552 4666789999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEeeh
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTR 158 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~t~ 158 (320)
|+||+++|.|++++++|.+++.+|+++++++++.+++++ |++++|++|||+|++|+ ++++ .+++|++|++|.|.
T Consensus 70 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~~~~~~~-~~~~p~~rvig~t~ 147 (314)
T 1mld_A 70 DVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNSTIPITAEVFKK-HGVYNPNKIFGVTT 147 (314)
T ss_dssp SEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHH-TTCCCTTSEEECCH
T ss_pred CEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCcchhHHHHHHHHHH-cCCCCcceEEEeec
Confidence 999999999999999999999999999999999999998 89999999999999985 4555 57899999888899
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCC-CCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNH-SSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h-g~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
||+.|+++++|+++|++|++|+.+ ||||| |++++|+||+++. . .+ +.++.| +++.+++++++++|++
T Consensus 148 Ld~~r~~~~la~~l~v~~~~v~~~-v~G~H~G~~~~p~~s~~~~----~----~~-~~~~~~--~~~~~~v~~~g~eii~ 215 (314)
T 1mld_A 148 LDIVRANAFVAELKGLDPARVSVP-VIGGHAGKTIIPLISQCTP----K----VD-FPQDQL--STLTGRIQEAGTEVVK 215 (314)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCBCC-EEECSSGGGEEECGGGCBS----C----CC-CCHHHH--HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCcChHhEEEE-EccCCCCCcEeeecccCCC----c----cc-CCHHHH--HHHHHHHHHHHHHHHh
Confidence 999999999999999999999977 58999 7999999999885 2 12 233433 7899999999999999
Q ss_pred cC-C-ccchHHHHHHHHHHHHHHHhCCC-CCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCC-CCChhhhhc
Q 020875 238 AR-K-LSSALSAASSACDHIRDWVLGTP-EGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGT-DAILYPMSF 312 (320)
Q Consensus 238 ~k-g-~~~~~~~a~a~~~~i~~~i~~~~-~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~-~L~~~E~~~ 312 (320)
.| | .++++++|.++++++.+++.+++ ++.++++ ++++|+| ++++|||+||++| +|+++++ ++ +|+++|+++
T Consensus 216 ~k~~~g~t~~~~a~a~~~~~~ai~~~~~g~~~v~~~-~~~~g~y--~~~~~~~~P~~ig~~Gv~~i~-~l~~l~~~e~~~ 291 (314)
T 1mld_A 216 AKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVEC-SFVKSQE--TDCPYFSTPLLLGKKGIEKNL-GIGKISPFEEKM 291 (314)
T ss_dssp HHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEE-EEEECCS--SSSSEEEEEEEEETTEEEEEC-CCCSCCHHHHHH
T ss_pred hhcCCCCcchhHHHHHHHHHHHHHcCcCCCcceEEE-EEeCCcc--CCceEEEEEEEEeCCeeEEec-CCCCCCHHHHHH
Confidence 65 2 23346778999988888776422 4478999 7999999 6899999999999 9999997 78 999999999
Q ss_pred ccCccc
Q 020875 313 LSPIAF 318 (320)
Q Consensus 313 l~~~~~ 318 (320)
|++++.
T Consensus 292 l~~s~~ 297 (314)
T 1mld_A 292 IAEAIP 297 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-52 Score=384.51 Aligned_cols=285 Identities=21% Similarity=0.280 Sum_probs=239.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEE---eCChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA---TTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~---~~~~~~al~ 80 (320)
++|||+||||+|+||++++..|+.++.. .+|+|+|+++ + .+.++|+.+...+ ..+.. ++++.++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~-----~ev~l~Di~~--~--~~~~~dL~~~~~~--~~v~~~~~t~d~~~al~ 75 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLV-----SVLHLYDVVN--A--PGVTADISHMDTG--AVVRGFLGQQQLEAALT 75 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTE-----EEEEEEESSS--H--HHHHHHHHTSCSS--CEEEEEESHHHHHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCC-----CEEEEEeCCC--c--HhHHHHhhccccc--ceEEEEeCCCCHHHHcC
Confidence 5689999998899999999999888753 3899999874 2 6678899886532 23443 446778999
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh----hHHHHHHHCCCCCCCcEEEe
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT----NALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~----~~~~~~~~~~~~~~~~i~~~ 156 (320)
|||+||+++|.+++++++|.+++.+|+++++++++.+++++ |+++++++|||+|+ +++.+++. +++|++|++|.
T Consensus 76 gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNPv~~~~~~~t~~~~~~-~~~p~~rviG~ 153 (326)
T 1smk_A 76 GMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNPVNSTVPIAAEVFKKA-GTYDPKRLLGV 153 (326)
T ss_dssp TCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHHHHHH-TCCCTTSEEEC
T ss_pred CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCchHHHHHHHHHHHHHc-cCCCcccEEEE
Confidence 99999999999999999999999999999999999999998 89999999999999 55555774 89999998888
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC-CCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHH
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH-SSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI 235 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h-g~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (320)
|.||+.|+++++|+++|++|++|+.+ ||||| |++++|+||++++ .. + +.++.| +++.+++++++++|
T Consensus 154 ~~Ld~~r~~~~la~~l~v~~~~v~~~-v~G~H~G~~~~p~~s~~~v----~~----~-~~~~~~--~~~~~~v~~~g~ei 221 (326)
T 1smk_A 154 TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKP----PS----S-FTQEEI--SYLTDRIQNGGTEV 221 (326)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGCBCC-EEECSSGGGEEECGGGCBS----CC----C-CCHHHH--HHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHhCcChhheEEE-EecccCCceEEEecccCee----cC----c-CCHHHH--HHHHHHHHHHHHHH
Confidence 99999999999999999999999977 58999 8999999999999 42 1 233333 78999999999999
Q ss_pred HhcC-C-ccchHHHHHHHHHH---HHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhh
Q 020875 236 IKAR-K-LSSALSAASSACDH---IRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYP 309 (320)
Q Consensus 236 ~~~k-g-~~~~~~~a~a~~~~---i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E 309 (320)
++.| | .+.++++|.+++++ |.+|+. ++++++|++ +++|+| |.++|||+||+++ +|++++++.++|+++|
T Consensus 222 i~~k~~~gs~~~~~a~a~~~~~~ai~~~~~--~~~~v~~~~-~~~g~~--~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e 296 (326)
T 1smk_A 222 VEAKAGAGSATLSMAYAAVKFADACLRGLR--GDAGVIECA-FVSSQV--TELPFFASKVRLGRNGIEEVYSLGPLNEYE 296 (326)
T ss_dssp HHHTTTSCCCCHHHHHHHHHHHHHHHHHHH--TCSCEEEEE-EEECCS--SSSSEEEEEEEEETTEEEEECCCCCCCHHH
T ss_pred HhcccCCCCcHHHHHHHHHHHHHHHHHHhC--CCCeEEEEE-eecccc--CCceEEEEEEEEeCCeeEEEcCCCCCCHHH
Confidence 9987 2 23346777888776 444455 467999998 788985 5789999999999 9999998449999999
Q ss_pred hhcccCccc
Q 020875 310 MSFLSPIAF 318 (320)
Q Consensus 310 ~~~l~~~~~ 318 (320)
+++|++++.
T Consensus 297 ~~~l~~s~~ 305 (326)
T 1smk_A 297 RIGLEKAKK 305 (326)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-51 Score=376.41 Aligned_cols=291 Identities=19% Similarity=0.281 Sum_probs=250.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-CcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~al~~aDv 84 (320)
|||+|+|| |.+|++++..|+..|+.+ +|+++|+++ +++++...++.+..... ...+.. ++ ++++++||+
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~-----~V~l~D~~~--~~~~~~~~~l~~~~~~~~~~~i~~-~d-~~~~~~aDv 70 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAR-----EMVLIDVDK--KRAEGDALDLIHGTPFTRRANIYA-GD-YADLKGSDV 70 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHHHGGGSCCCEEEE-CC-GGGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC-----eEEEEeCCh--HHHHHHHHHHHhhhhhcCCcEEEe-CC-HHHhCCCCE
Confidence 69999995 999999999999888753 899999974 56777777776653211 123443 34 678999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEE-EeehhhHHH
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT-CLTRLDHNR 163 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~-~~t~ld~~r 163 (320)
||++++.+++++++|.|++.+|+++++++++.+++++ |++++|++|||++.+++++++. +++|++|++ .+|.||+.|
T Consensus 71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~~~~~~~~-~~~~~~rviG~~t~ld~~r 148 (319)
T 1a5z_A 71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVLTYFFLKE-SGMDPRKVFGSGTVLDTAR 148 (319)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HTCCTTTEEECTTHHHHHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHHHHHHHHH-hCCChhhEEeeCccHHHHH
Confidence 9999999998999999999999999999999999998 8999999999999999999886 689999965 558999999
Q ss_pred HHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccch-h---hhhHHHHHHhhhhHHHHhcC
Q 020875 164 ALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA-W---LNGEFITTVQQRGAAIIKAR 239 (320)
Q Consensus 164 ~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~-~---~~~~~~~~v~~~~~~i~~~k 239 (320)
+++.+|+++|+++.+|+++ ||||||++++|+||++++ +|+|+.+++.+.. | ..+++.+++++++++|++.|
T Consensus 149 ~~~~la~~lgv~~~~v~~~-v~G~hg~~~~p~~s~~~v----~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k 223 (319)
T 1a5z_A 149 LRTLIAQHCGFSPRSVHVY-VIGEHGDSEVPVWSGAMI----GGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK 223 (319)
T ss_dssp HHHHHHHHHTCCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHceEE-EEeCCCCCcccchhhceE----CCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccC
Confidence 9999999999999999987 589999999999999999 9999999864322 2 34779999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCccc
Q 020875 240 KLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIAF 318 (320)
Q Consensus 240 g~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~~ 318 (320)
|.+++ ++|.++++++.+++. ++++++|++++++|+||+ +|+|+|+||+++ +|+++++ +++|+++|+++|++++.
T Consensus 224 g~~~~-~~a~a~~~~~~ai~~--~~~~~~~~~~~~~g~~g~-~~~~~~vP~~vg~~Gv~~i~-~~~L~~~e~~~l~~s~~ 298 (319)
T 1a5z_A 224 GATHY-AIALAVADIVESIFF--DEKRVLTLSVYLEDYLGV-KDLCISVPVTLGKHGVERIL-ELNLNEEELEAFRKSAS 298 (319)
T ss_dssp SCCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEEESSBTTB-CSEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred CchHH-HHHHHHHHHHHHHHh--CCCCEEEEEEEecCccCc-cceEEEEEEEEeCCceEEEe-cCCCCHHHHHHHHHHHH
Confidence 97765 457888888776654 578999999999999999 899999999999 9999998 69999999999998764
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-48 Score=355.58 Aligned_cols=295 Identities=18% Similarity=0.316 Sum_probs=251.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a 78 (320)
|+ +++||+|+|| |.+|+.++..|+..|+. +|+|+|+++ +++++..+|+.+.... ...++..+++. ++
T Consensus 1 M~-~~~kI~VIGa-G~~G~~ia~~la~~g~~------~V~l~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a 69 (317)
T 2ewd_A 1 MI-ERRKIAVIGS-GQIGGNIAYIVGKDNLA------DVVLFDIAE--GIPQGKALDITHSMVMFGSTSKVIGTDDY-AD 69 (317)
T ss_dssp CC-CCCEEEEECC-SHHHHHHHHHHHHHTCC------EEEEECSSS--SHHHHHHHHHHHHHHHHTCCCCEEEESCG-GG
T ss_pred CC-CCCEEEEECC-CHHHHHHHHHHHhCCCc------eEEEEeCCc--hHHHHHHHHHHhhhhhcCCCcEEEECCCH-HH
Confidence 66 4579999995 99999999999998863 799999975 5677666777664311 23466766776 89
Q ss_pred cCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-e
Q 020875 79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-T 157 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t 157 (320)
+++||+||+++|.|++++++|.|++.+|.++++++++.+++++ |+++++++|||++++++.+++. +++|++|++|. |
T Consensus 70 ~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~~~~~~~~~-~~~~~~rviG~~t 147 (317)
T 2ewd_A 70 ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDVMVSHFQKV-SGLPHNKVCGMAG 147 (317)
T ss_dssp GTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHH-HCCCGGGEEESCH
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHh-hCCCHHHEEeccC
Confidence 9999999999999999999999999999999999999999998 7999999999999999999885 78988897666 7
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccc---hhhhhHHHHHHhhhhHH
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD---AWLNGEFITTVQQRGAA 234 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~ 234 (320)
.+|+.|+++.+|+++|+++.+++++ |+|+||++++|+||++++ +|+|+.+++.+. ....+++.+.++.++++
T Consensus 148 ~ld~~r~~~~la~~lg~~~~~v~~~-v~g~Hg~~~~~~~~~a~v----~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~e 222 (317)
T 2ewd_A 148 VLDSSRFRTFIAQHFGVNASDVSAN-VIGGHGDGMVPATSSVSV----GGVPLSSFIKQGLITQEQIDEIVCHTRIAWKE 222 (317)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcChhhceEE-EEecCCCceeEEeecccc----CCEEHHHHHhccCCCHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999998 489999999999999999 999998886432 11235677777889999
Q ss_pred HHhc--CCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhh
Q 020875 235 IIKA--RKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMS 311 (320)
Q Consensus 235 i~~~--kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~ 311 (320)
+++. +|.+ ++++|.++++++.+++. ++++++|++++.+|+||+ +|+|+|+||+++ +|+++++ +++|+++|++
T Consensus 223 i~~~~g~g~~-~~~~a~a~~~~~~ai~~--~~~~~~~~~~~~~G~~g~-~~~~~~~P~~i~~~Gv~~i~-~~~l~~~e~~ 297 (317)
T 2ewd_A 223 VADNLKTGTA-YFAPAAAAVKMAEAYLK--DKKAVVPCSAFCSNHYGV-KGIYMGVPTIIGKNGVEDIL-ELDLTPLEQK 297 (317)
T ss_dssp HHHHHSSSCC-CHHHHHHHHHHHHHHHT--TCCEEEEEEEEESSSTTC-SSEEEEEEEEEETTEEEEEC-CCCCCHHHHH
T ss_pred HHHhhcCCch-HHHHHHHHHHHHHHHHc--CCCeEEEEEEEecCccCC-cceEEEeEEEEcCCeeEEec-CCCCCHHHHH
Confidence 9994 5544 55678888887776554 567999999999999999 899999999999 9999998 6999999999
Q ss_pred cccCccc
Q 020875 312 FLSPIAF 318 (320)
Q Consensus 312 ~l~~~~~ 318 (320)
+|++++.
T Consensus 298 ~l~~s~~ 304 (317)
T 2ewd_A 298 LLGESIN 304 (317)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988763
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=352.53 Aligned_cols=286 Identities=16% Similarity=0.184 Sum_probs=241.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEE-eCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-TTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~-~~~~~~al~~aDv 84 (320)
|||+|+| +|.+|++++..|+..|+. .+|+++|+++ +++++...++.+........+.. .++. +++++||+
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~-----~~V~l~d~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDv 72 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVA-----DDYVFIDANE--AKVKADQIDFQDAMANLEAHGNIVINDW-AALADADV 72 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCC-----SEEEEECSSH--HHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCC-----CEEEEEcCCH--HHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCE
Confidence 7999999 699999999999988842 2899999974 56777777776554222223444 4555 88999999
Q ss_pred EEEeCCCCCC----CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe-ehh
Q 020875 85 AVMVGGFPRK----EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL-TRL 159 (320)
Q Consensus 85 Vi~~ag~~~~----~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~-t~l 159 (320)
||++++.+++ ++++|.+++.+|+++++++++.+++++ |+++++++|||++.+++++++. +++|++|++|. |.+
T Consensus 73 Viiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~~~~~~~~-~~~~~~rvig~gt~l 150 (309)
T 1hyh_A 73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHV-TGFPAHKVIGTGTLL 150 (309)
T ss_dssp EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEECTTHH
T ss_pred EEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHHHHHHHHHh-cCCCHHHEeecCccc
Confidence 9999999887 899999999999999999999999998 7899999999999999999886 78999998777 999
Q ss_pred hHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhh--cccchhhhhHHHHHHhhhhHHHHh
Q 020875 160 DHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVREL--VKDDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 160 d~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
|+.|+++.+++.+++++.++++++ ||+||++++|+||++++ +|.|+.++ +.++.| +++.+++++++++|++
T Consensus 151 d~~r~~~~~a~~l~~~~~~v~~~v-~G~hg~~~~~~~s~~~v----~g~~~~~~~~~~~~~~--~~~~~~v~~~g~~ii~ 223 (309)
T 1hyh_A 151 DTARMQRAVGEAFDLDPRSVSGYN-LGEHGNSQFVAWSTVRV----MGQPIVTLADAGDIDL--AAIEEEARKGGFTVLN 223 (309)
T ss_dssp HHHHHHHHHHHHHTCCGGGCBCCE-EBCTTTTCEECTTTCEE----TTEEGGGC-----CCH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChhheEEEE-EeCCCCcEeeccccceE----CCEEHHHhccCCHHHH--HHHHHHHHHhHHHHHh
Confidence 999999999999999999999874 89999999999999999 99999988 444545 7899999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCc
Q 020875 238 ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPI 316 (320)
Q Consensus 238 ~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~ 316 (320)
.||.+. +++|.++++++.+++. ++++++|++++++| .++|+|+||+++ +|+++++ +++|+++|+++|+++
T Consensus 224 ~kg~~~-~~~a~a~~~~~~ai~~--~~~~~~~~~~~~~g-----~~~~~~vP~~i~~~Gv~~i~-~~~l~~~e~~~l~~s 294 (309)
T 1hyh_A 224 GKGYTS-YGVATSAIRIAKAVMA--DAHAELVVSNRRDD-----MGMYLSYPAIIGRDGVLAET-TLDLTTDEQEKLLQS 294 (309)
T ss_dssp HHSSCC-HHHHHHHHHHHHHHHT--TCCEEEEEEEECTT-----TCSEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHH
T ss_pred ccCCch-HHHHHHHHHHHHHHHc--CCCcEEEEEEEECC-----CCeEEEEEEEEeCCceEEEe-CCCCCHHHHHHHHHH
Confidence 999765 4668888887776655 56899999999998 478999999999 9999998 589999999999987
Q ss_pred cc
Q 020875 317 AF 318 (320)
Q Consensus 317 ~~ 318 (320)
+.
T Consensus 295 ~~ 296 (309)
T 1hyh_A 295 RD 296 (309)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=312.76 Aligned_cols=294 Identities=21% Similarity=0.281 Sum_probs=247.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-CcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~al~~a 82 (320)
++|||+|+|| |.+|+.++..|+..|+.+ +|+|+|+++ +++++.++|+.+..... ...+..+++ +++++++
T Consensus 6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~-----~V~l~d~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~a 76 (319)
T 1lld_A 6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAR-----EIVLEDIAK--ERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDA 76 (319)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCCS-----EEEEECSSH--HHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCC-----EEEEEeCCh--hHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCC
Confidence 4689999995 999999999999988754 899999973 56666667776654211 123444444 5789999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEE-EeehhhH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT-CLTRLDH 161 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~-~~t~ld~ 161 (320)
|+||++++.+++++++|.+++.+|+++++++++.+++++ |++++++++||++.++++.++. +++|+++++ ++|.+|+
T Consensus 77 D~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~-~~~~vi~~~Np~~~~~~~~~~~-~~~~~~~vig~~~~l~~ 154 (319)
T 1lld_A 77 DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVDIATHVAQKL-TGLPENQIFGSGTNLDS 154 (319)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHH-HTCCTTSEEECTTHHHH
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEecCchHHHHHHHHHh-cCCCHHHEeeccccHhH
Confidence 999999999999999999999999999999999999996 8899999999999999998875 678988875 5599999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh------hhhHHHHHHhhhhHHH
Q 020875 162 NRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW------LNGEFITTVQQRGAAI 235 (320)
Q Consensus 162 ~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~i 235 (320)
.|++..+++++++++.+++.++ ||+||++++|+||++.+ ++.|+.+++....| ..+++.+.+++.+++|
T Consensus 155 ~r~~~~~a~~~~v~~~~v~~~~-~G~~g~~~~~~w~k~~i----n~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v 229 (319)
T 1lld_A 155 ARLRFLIAQQTGVNVKNVHAYI-AGEHGDSEVPLWESATI----GGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKI 229 (319)
T ss_dssp HHHHHHHHHHHTCCGGGEECCE-EBSSSTTCEECTTSCEE----TTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHeEEEE-EeCCCCceeeeeecceE----CCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhh
Confidence 9999999999999999999875 89999999999999999 88899887643222 1367888889999999
Q ss_pred HhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 236 IKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 236 ~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
++.+|.+.+ +.+.+.++++++++. +++.++|+|++++|+|+. .+.++|+|+.++ +|+++++ +++|+++|+++|+
T Consensus 230 ~~~~G~~~~-~~a~~~~sm~~di~~--~~~~ei~~s~~~~G~~~~-~~~~~gvp~~~~~~Gv~~i~-~~~l~~~e~~~l~ 304 (319)
T 1lld_A 230 INGKGATNY-AIGMSGVDIIEAVLH--DTNRILPVSSMLKDFHGI-SDICMSVPTLLNRQGVNNTI-NTPVSDKELAALK 304 (319)
T ss_dssp HTSCCSCCH-HHHHHHHHHHHHHHT--TCCEEEEEEEECSSBTTB-CSSEEEEEEEEETTEEECCS-CCCCCHHHHHHHH
T ss_pred hhCCCCchH-HHHHHHHHHHHHHHc--CCCcEEEEEEEecCcCCc-cceEEEEEEEEeCCeeEEEc-CCCCCHHHHHHHH
Confidence 999997654 456777777777665 467999999999999998 899999999999 9999998 6999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
+++.
T Consensus 305 ~s~~ 308 (319)
T 1lld_A 305 RSAE 308 (319)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=323.05 Aligned_cols=300 Identities=14% Similarity=0.134 Sum_probs=224.1
Q ss_pred CCCCCCEEEEEcCCChh-HHHHHHHHHh--cCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc---CCCCcceEEeCC
Q 020875 1 MAKEPVRVLVTGAAGQI-GYALVPMIAR--GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA---FPLLKGVVATTD 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~v-G~~la~~L~~--~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~ 74 (320)
|++ ++||+|+|| |++ |.+++..|+. .++.. .+|+|+|+++.++++++. .|+.+.. .....+++.+++
T Consensus 4 m~~-~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~----~ev~L~Di~~~~e~~~~~-~~~~~~~~~~~~~~~~i~~t~D 76 (450)
T 1s6y_A 4 MDK-RLKIATIGG-GSSYTPELVEGLIKRYHELPV----GELWLVDIPEGKEKLEIV-GALAKRMVEKAGVPIEIHLTLD 76 (450)
T ss_dssp ----CEEEEEETT-TCTTHHHHHHHHHHTTTTCCE----EEEEEECCGGGHHHHHHH-HHHHHHHHHHTTCCCEEEEESC
T ss_pred ccC-CCEEEEECC-CHHHHHHHHHHHHcCCCCCCC----CEEEEEEcCCChHHHHHH-HHHHHHHHhhcCCCcEEEEeCC
Confidence 654 689999995 777 8887777776 44311 389999997422556653 3443321 123456777788
Q ss_pred hhhhcCCCcEEEEeCCCCCCCCCCHHHH--------------------HHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 75 AVEACTGVNIAVMVGGFPRKEGMERKDV--------------------MSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~~~r~~~--------------------~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
++++++|||+||++++.+++++++|+++ ..+|+++++++++.|+++| |++++|++|||+
T Consensus 77 ~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~tNPv 155 (450)
T 1s6y_A 77 RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPA 155 (450)
T ss_dssp HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred HHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcH
Confidence 8899999999999999988877777644 7899999999999999999 999999999999
Q ss_pred hhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEc-----------CCCCcccccccccccc-
Q 020875 135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-----------NHSSSQYPDVNHATVN- 202 (320)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G-----------~hg~~~~~~~S~~~v~- 202 (320)
|++|++++++ + |.+|++|.|+.. .|+++.+|+.||+++++|+.++ +| +||++++|.||...+.
T Consensus 156 divT~a~~k~-~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v-~GlNH~~w~~~v~~~G~d~~p~~~~~~~~~ 230 (450)
T 1s6y_A 156 GMVTEAVLRY-T--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDF-AGLNHMVFGLHVYLDGVEVTEKVIDLVAHP 230 (450)
T ss_dssp HHHHHHHHHH-C--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEE-EEETTEEEEEEEEETTEECHHHHHHHHSCC
T ss_pred HHHHHHHHHh-C--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEE-EeeecceeEEEeeeCCcCchHhHHHHHhhh
Confidence 9999999997 3 666888887665 5999999999999999999885 79 9999999999986541
Q ss_pred -----CC--CCCcchh------------hhcc-----cc---hh--------hhhHHHHHHhhhhHHHH-----hcCC--
Q 020875 203 -----TA--AGEKPVR------------ELVK-----DD---AW--------LNGEFITTVQQRGAAII-----KARK-- 240 (320)
Q Consensus 203 -----~~--~~~~~~~------------~~~~-----~~---~~--------~~~~~~~~v~~~~~~i~-----~~kg-- 240 (320)
.. -.+.|+. +++. ++ .| .+.++.+++++.+++|+ +.|+
T Consensus 231 ~~~g~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~ 310 (450)
T 1s6y_A 231 DRSGVTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQ 310 (450)
T ss_dssp ------------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC--------
T ss_pred ccccccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccch
Confidence 00 0012442 1111 11 11 23466777888899999 5443
Q ss_pred ---ccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCcc-CCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccC
Q 020875 241 ---LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY-NVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSP 315 (320)
Q Consensus 241 ---~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~y-g~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~ 315 (320)
++.++. +.++++++. +|++ |+++++|++++.+|+| |+|.|+|+++||+++ +|+..++ ..+|+++|++++++
T Consensus 311 ~~~~~~~~~-~~~a~~ii~-AI~~-d~~~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~-~~~L~~~e~~l~~~ 386 (450)
T 1s6y_A 311 LEKRGGAYY-SDAACSLIS-SIYN-DKRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIA-VGDLPVAVRGLVQQ 386 (450)
T ss_dssp ---CCSCCH-HHHHHHHHH-HHHH-TCCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECC-CBCCCHHHHHHHHH
T ss_pred hhcccchHH-HHHHHHHHH-HHHc-CCCeEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEee-cCCCCHHHHHHHHH
Confidence 344333 455665555 4554 6789999999999999 799999999999999 8999888 79999999999876
Q ss_pred cc
Q 020875 316 IA 317 (320)
Q Consensus 316 ~~ 317 (320)
.+
T Consensus 387 ~~ 388 (450)
T 1s6y_A 387 IK 388 (450)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=312.79 Aligned_cols=292 Identities=14% Similarity=0.159 Sum_probs=219.7
Q ss_pred CCCEEEEEcCCChh-HHHHHHHHHh--cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 4 EPVRVLVTGAAGQI-GYALVPMIAR--GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~v-G~~la~~L~~--~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
+++||+|+|| |++ +..++..|+. .++.. .||+|+|+++ ++++. ..|+.+.......+++.+++.+++++
T Consensus 1 ~~~KI~IIGa-G~v~~~~l~~~l~~~~~~l~~----~el~L~Di~~--~~~~~-~~~~~~~~~~~~~~v~~t~d~~~al~ 72 (417)
T 1up7_A 1 RHMRIAVIGG-GSSYTPELVKGLLDISEDVRI----DEVIFYDIDE--EKQKI-VVDFVKRLVKDRFKVLISDTFEGAVV 72 (417)
T ss_dssp CCCEEEEETT-TCTTHHHHHHHHHHHTTTSCC----CEEEEECSCH--HHHHH-HHHHHHHHHTTSSEEEECSSHHHHHT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcccCCCc----CEEEEEeCCH--HHHHH-HHHHHHHHhhCCeEEEEeCCHHHHhC
Confidence 3689999996 665 3333445555 45411 3999999974 56665 56665532111145666678789999
Q ss_pred CCcEEEEeCCCCCCCCCCHHH--------------------HHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH
Q 020875 81 GVNIAVMVGGFPRKEGMERKD--------------------VMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~--------------------~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
|||+||+++|++++++++|++ +..+|+++++++++.|+++| ++|+|++|||+|++|++
T Consensus 73 ~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPvdi~t~a 150 (417)
T 1up7_A 73 DAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPSGHITEF 150 (417)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSHHHHHHH
T ss_pred CCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChHHHHHHH
Confidence 999999999998877777753 35899999999999999998 79999999999999999
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEc-----------CCCCccccccccc---cccCCCC
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-----------NHSSSQYPDVNHA---TVNTAAG 206 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G-----------~hg~~~~~~~S~~---~v~~~~~ 206 (320)
++++ + |.+|++|.|... .|+++.+|+.+|+++++|+.++ +| +||++++|.||.. ++.. -.
T Consensus 151 ~~k~-~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v-~GlNH~~w~~~~~~hG~d~~p~~~~~~~~~~~~-~~ 224 (417)
T 1up7_A 151 VRNY-L--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKY-YGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSN-IP 224 (417)
T ss_dssp HHHT-T--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEE-EEETTEEEEEEEEETTEECHHHHHHHHTTC----CC
T ss_pred HHHh-C--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEE-EeecceeeEEEeecCCcEehhhHHHHHHHhhCC-Cc
Confidence 9995 3 776887777553 4999999999999999999885 79 9999999999996 5510 02
Q ss_pred Ccchh-hhcc----------------cch---h----hhhHHHHHHhhhhHHHH----------hcCCccchHHHHHHHH
Q 020875 207 EKPVR-ELVK----------------DDA---W----LNGEFITTVQQRGAAII----------KARKLSSALSAASSAC 252 (320)
Q Consensus 207 ~~~~~-~~~~----------------~~~---~----~~~~~~~~v~~~~~~i~----------~~kg~~~~~~~a~a~~ 252 (320)
+.|+. ++++ ++. | .+.+..+++++.+++++ +.||.+ +. +.+++
T Consensus 225 ~~~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~~kg~t-~~--~~~a~ 301 (417)
T 1up7_A 225 DEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGS-MY--STAAA 301 (417)
T ss_dssp TTSCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTT-TH--HHHHH
T ss_pred CCchHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhhhcCCc-HH--HHHHH
Confidence 36772 3321 110 1 12233567778889998 445644 22 45555
Q ss_pred HHHHHHHhCCCCCcEEEEEEecCCcc-CCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcccCcc
Q 020875 253 DHIRDWVLGTPEGTWVSMGVYSDGSY-NVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLSPIA 317 (320)
Q Consensus 253 ~~i~~~i~~~~~~~i~~~~v~~~g~y-g~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~~~~ 317 (320)
+++. +|++ |+++++|++++.+|+| |+|.|+++++||+++ +|+..+. ..+|+++|+++|++.+
T Consensus 302 ~ii~-AI~~-d~~~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~-~~~L~~~e~~~l~~~~ 365 (417)
T 1up7_A 302 HLIR-DLET-DEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLS-QGKGDHFALSFIHAVK 365 (417)
T ss_dssp HHHH-HHHS-SSCEEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBC-CCCCCHHHHHHHHHHH
T ss_pred HHHH-HHHc-CCCeEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEee-cCCCCHHHHHHHHHHH
Confidence 5444 5665 6889999999999999 799999999999999 8998887 7999999999987654
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=306.93 Aligned_cols=298 Identities=16% Similarity=0.159 Sum_probs=214.6
Q ss_pred CCCCCCEEEEEcCCChh-HHHHHHHHHhc--CcCCCCCCeEEEEEecCCccchhHHHHHHHhccc---CCCCcceEEeCC
Q 020875 1 MAKEPVRVLVTGAAGQI-GYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA---FPLLKGVVATTD 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~v-G~~la~~L~~~--~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~ 74 (320)
|.++++||+|+|| |++ |.+++..|+.+ ++.+ .+|+|+|+++ +++++. .|+.+.. .....+++.+++
T Consensus 24 m~m~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~----~eV~L~Di~~--e~~~~~-~~~~~~~l~~~~~~~~I~~t~D 95 (472)
T 1u8x_X 24 MKKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPI----RKLKLYDNDK--ERQDRI-AGACDVFIREKAPDIEFAATTD 95 (472)
T ss_dssp --CCCEEEEEECT-TSSSHHHHHHHHHHTTTTSCE----EEEEEECSCH--HHHHHH-HHHHHHHHHHHCTTSEEEEESC
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHHhCCCCCCC----CEEEEEeCCH--HHHHHH-HHHHHHHhccCCCCCEEEEECC
Confidence 4334579999995 877 66678778776 4411 3899999974 566663 4554432 123457788888
Q ss_pred hhhhcCCCcEEEEeCCCCCCCCCCHHHH--------------------HHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 75 AVEACTGVNIAVMVGGFPRKEGMERKDV--------------------MSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~~~r~~~--------------------~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
++++++|||+||++++.++.++++|+++ ..+|+++++++++.|+++| |++++|++|||+
T Consensus 96 ~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPv 174 (472)
T 1u8x_X 96 PEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPA 174 (472)
T ss_dssp HHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCH
T ss_pred HHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcH
Confidence 8899999999999999988777777554 7899999999999999999 999999999999
Q ss_pred hhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCC-CCeeeeEEEc-----------C-CCCccccccccccc
Q 020875 135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQV-SDVKNVIIWG-----------N-HSSSQYPDVNHATV 201 (320)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~-~~v~~~~v~G-----------~-hg~~~~~~~S~~~v 201 (320)
|++|+++++. + |+.|++|.|... .|+++.+|+.||+++ ++|+..+ +| + ||++++|.||...+
T Consensus 175 di~T~~~~k~-~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v-~GlNH~~W~~~~~~~hG~d~~p~~~~~~~ 249 (472)
T 1u8x_X 175 AIVAEATRRL-R--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRY-YGLNHFGWWTSIQDQEGNDLMPKLKEHVS 249 (472)
T ss_dssp HHHHHHHHHH-S--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEE-EEETTEEEEEEEEETTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHh-C--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEE-eccchhhheeeeEeCCCCEehHhHHHHHH
Confidence 9999999997 3 777888887664 499999999999998 9999885 79 8 99999999998653
Q ss_pred -c--CCCC-----Ccchh-hhccc------------ch---h-h-hhHHHH----------HHhh----hhHHHHh-c--
Q 020875 202 -N--TAAG-----EKPVR-ELVKD------------DA---W-L-NGEFIT----------TVQQ----RGAAIIK-A-- 238 (320)
Q Consensus 202 -~--~~~~-----~~~~~-~~~~~------------~~---~-~-~~~~~~----------~v~~----~~~~i~~-~-- 238 (320)
. .+.+ ..|+. +++.. .. | . .+++.+ .+++ ..+++++ .
T Consensus 250 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~ 329 (472)
T 1u8x_X 250 QYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITR 329 (472)
T ss_dssp HHSSCCCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHH
T ss_pred hcCCCccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 0000 01221 22100 00 1 0 012111 2222 2233333 3
Q ss_pred CC---ccch--HHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCcc-CCCCceEEEEEEEEe-CCeEEEecCCCCChhhhh
Q 020875 239 RK---LSSA--LSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY-NVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMS 311 (320)
Q Consensus 239 kg---~~~~--~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~y-g~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~ 311 (320)
++ .+.+ ...+.++++++. +|++ |+++++|++++.+|+| |+|.|+++++||+++ +|+..+. ..+|+++|++
T Consensus 330 ~~~~~~~~~~~~~~~~~a~~ii~-AI~~-d~~~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~-~~~Lp~~~~~ 406 (472)
T 1u8x_X 330 EQSSENSEIKIDDHASYIVDLAR-AIAY-NTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPIT-VGTIPQFQKG 406 (472)
T ss_dssp HTSCCSCSSCCCTTTHHHHHHHH-HHHH-TCCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECC-CBCCCHHHHH
T ss_pred cCCcccccccccHHHHHHHHHHH-HHhc-CCCeEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEee-cCCCCHHHHH
Confidence 44 2212 023556665555 4554 6789999999999999 799999999999999 8999887 7999999999
Q ss_pred cccC
Q 020875 312 FLSP 315 (320)
Q Consensus 312 ~l~~ 315 (320)
.+++
T Consensus 407 l~~~ 410 (472)
T 1u8x_X 407 LMEQ 410 (472)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=248.64 Aligned_cols=284 Identities=14% Similarity=0.168 Sum_probs=201.8
Q ss_pred CCCCCCEEEEEcCCChh--HHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQI--GYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~v--G~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (320)
|+++++||+|+|| |++ |..++..|+....+. .+|+|+|+++ ++++.... +.+.......+++.++++.+|
T Consensus 1 m~m~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~----geV~L~Di~~--e~le~~~~-~~~~l~~~~~~I~~TtD~~eA 72 (450)
T 3fef_A 1 MSLDQIKIAYIGG-GSQGWARSLMSDLSIDERMS----GTVALYDLDF--EAAQKNEV-IGNHSGNGRWRYEAVSTLKKA 72 (450)
T ss_dssp --CCCEEEEEETT-TCSSHHHHHHHHHHHCSSCC----EEEEEECSSH--HHHHHHHH-HHTTSTTSCEEEEEESSHHHH
T ss_pred CCCCCCEEEEECC-ChhHhHHHHHHHHHhccccC----CeEEEEeCCH--HHHHHHHH-HHHHHhccCCeEEEECCHHHH
Confidence 7778899999995 886 567887777643221 2899999974 33332111 111111134567888999999
Q ss_pred cCCCcEEEEeCC------------CCCCCCCCHH--HH--------HHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 79 CTGVNIAVMVGG------------FPRKEGMERK--DV--------MSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 79 l~~aDvVi~~ag------------~~~~~~~~r~--~~--------~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
++|||+||+++. +|+++|..+. |. ..+|+++++++++.|+++| |++++|++|||+|+
T Consensus 73 l~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~-p~a~~i~~tNPvdi 151 (450)
T 3fef_A 73 LSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYA-PESWVINYTNPMSV 151 (450)
T ss_dssp HTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHH
T ss_pred hcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHC-CCeEEEEecCchHH
Confidence 999999999985 4777777555 43 3499999999999999999 89999999999999
Q ss_pred hHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHc----C---CCCCCeeeeEEEc-CCCCccccccccccccCCCCCc
Q 020875 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKL----N---VQVSDVKNVIIWG-NHSSSQYPDVNHATVNTAAGEK 208 (320)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l----~---v~~~~v~~~~v~G-~hg~~~~~~~S~~~v~~~~~~~ 208 (320)
+|+++++. +|+.|++|.|+.. .+++..+|+.| | +++++|+..+ .| || +.+|+++++ +|+
T Consensus 152 ~t~~~~k~---~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~-~GlNH----~~w~~~~~~----~G~ 218 (450)
T 3fef_A 152 CTRVLYKV---FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNV-LGINH----FTWITKASY----RHI 218 (450)
T ss_dssp HHHHHHHH---CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEE-EEETT----EEEEEEEEE----TTE
T ss_pred HHHHHHHH---CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEE-eeecC----eEeEEEEEE----CCE
Confidence 99999985 5778899999885 69999999999 5 7799999775 79 88 999999999 777
Q ss_pred chhhhc----cc---c-------hhhh----------hHHHHHH------------------------------------
Q 020875 209 PVRELV----KD---D-------AWLN----------GEFITTV------------------------------------ 228 (320)
Q Consensus 209 ~~~~~~----~~---~-------~~~~----------~~~~~~v------------------------------------ 228 (320)
++...+ .+ + .|.. -++.+..
T Consensus 219 d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r 298 (450)
T 3fef_A 219 DLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFR 298 (450)
T ss_dssp EHHHHHHHHHHHHTTTCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHH
T ss_pred EChHHHHHHHHhhcccccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhH
Confidence 665422 10 0 1100 0111111
Q ss_pred ----hhh---hHHHHh------cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCcc-CCCCceEEEEEEEEe-
Q 020875 229 ----QQR---GAAIIK------ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY-NVPAGLIYSFPVTCR- 293 (320)
Q Consensus 229 ----~~~---~~~i~~------~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~y-g~~~~v~~s~P~~i~- 293 (320)
.+. -.+..+ .++++ .+++++ .++|.+ |++.++++++..+|+| |+|.|+++++||+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------e~~~~i-i~aI~~-d~~~~~~vnv~n~G~i~~lp~d~~vevP~~v~~ 370 (450)
T 3fef_A 299 KQDRAEKRQETERLIVQQRGVAEKASG------EEGVNI-IAALLG-LGELVTNVNMPNQGQVLNLPIQAIVETNAFITR 370 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCSCCS------CCHHHH-HHHHTT-SCCEEEEEEEECSSSSTTSCTTSEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHhcCCcCcCcCccH------HHHHHH-HHHHHc-CCCeEEEEEeecCcEecCCCCCeEEEEEEEEcC
Confidence 000 000000 01111 123443 345665 6889999999999998 899999999999999
Q ss_pred CCeEEEecCCCCChhhhhcccC
Q 020875 294 NGEWTIVQGTDAILYPMSFLSP 315 (320)
Q Consensus 294 ~G~~~~~~~~~L~~~E~~~l~~ 315 (320)
+|+..+. ..+|++.+++.+++
T Consensus 371 ~Gi~pi~-~g~Lp~~~~~l~~~ 391 (450)
T 3fef_A 371 NRVQPIL-SGALPKGVEMLAAR 391 (450)
T ss_dssp TEEEEBC-CCCCCHHHHHHHHH
T ss_pred CCceecc-cCCCCHHHHHHHHH
Confidence 8888776 67899999987643
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=214.15 Aligned_cols=177 Identities=17% Similarity=0.191 Sum_probs=131.5
Q ss_pred CCEEEEEcCCChhH--HHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhccc---CCCCcceEEeCChhhh
Q 020875 5 PVRVLVTGAAGQIG--YALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA---FPLLKGVVATTDAVEA 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG--~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~---~~~~~~v~~~~~~~~a 78 (320)
++||+|+|| |.|| .+++..|+.. ++.+ .+|+|+|+++ +++++. .++.+.. .....+++.++++.++
T Consensus 3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~----~eV~L~Di~~--e~l~~~-~~~~~~~l~~~~~~~~I~~ttD~~ea 74 (480)
T 1obb_A 3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSG----STVTLMDIDE--ERLDAI-LTIAKKYVEEVGADLKFEKTMNLDDV 74 (480)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTT----CEEEEECSCH--HHHHHH-HHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred CCEEEEECC-CchHHHHHHHHHHHhcCcCCC----CEEEEEeCCH--HHHHHH-HHHHHHHhccCCCCcEEEEECCHHHH
Confidence 579999995 9874 5557777643 3311 3999999974 556653 3332221 1234578888888899
Q ss_pred cCCCcEEEEeCCC------------CCCCCCCH--HH------------HHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 79 CTGVNIAVMVGGF------------PRKEGMER--KD------------VMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 79 l~~aDvVi~~ag~------------~~~~~~~r--~~------------~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
++|||+||++++. |.+++..+ .+ ++.+|+++++++++.|+++| |++++|++||
T Consensus 75 l~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TN 153 (480)
T 1obb_A 75 IIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYLQAAN 153 (480)
T ss_dssp HTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEEECSS
T ss_pred hCCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 9999999999986 33334333 22 36799999999999999999 9999999999
Q ss_pred cchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEc-CCCCccccccccccc
Q 020875 133 PANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-NHSSSQYPDVNHATV 201 (320)
Q Consensus 133 P~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G-~hg~~~~~~~S~~~v 201 (320)
|+|++|+++++ +|++|++|.|.++. ++++.+ +.+|+++++|+.++ +| || +.+|.++++
T Consensus 154 Pvdi~t~~~~k----~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v-~GlNH----~~w~~~~~~ 212 (480)
T 1obb_A 154 PIFEGTTLVTR----TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQV-AGVNH----GIWLNRFRY 212 (480)
T ss_dssp CHHHHHHHHHH----HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEE-EEETT----EEEEEEEEE
T ss_pred cHHHHHHHHHH----CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEE-Eeecc----hhhhhheee
Confidence 99999999987 46778766665544 478999 99999999999885 78 66 566644443
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-24 Score=205.60 Aligned_cols=180 Identities=21% Similarity=0.204 Sum_probs=133.0
Q ss_pred CEEEEEcCCChhHHHH--HHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhhcCC
Q 020875 6 VRVLVTGAAGQIGYAL--VPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEACTG 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~l--a~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~al~~ 81 (320)
|||+|||| |++|++. +..|+....++ ....+|+|+|+++ +++++...++.+.... ...+++.+++..+|++|
T Consensus 1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~-~~~~ei~L~Di~~--~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g 76 (477)
T 3u95_A 1 MKISIVGA-GSVRFALQLVEDIAQTDELS-REDTHIYLMDVHE--RRLNASYILARKYVEELNSPVKVVKTESLDEAIEG 76 (477)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTCTTTC-STTCEEEEECSCH--HHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT
T ss_pred CEEEEECC-CchhhHHHHHHHHHhhHhcC-CCCCEEEEECCCH--HHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC
Confidence 79999995 9998763 33444432221 0124899999974 7788877777765422 23567888999999999
Q ss_pred CcEEEEeCCCC-------------------CCCCCCHHHHH---------------HhhHHHHHHHHHHHhhhcCCCeEE
Q 020875 82 VNIAVMVGGFP-------------------RKEGMERKDVM---------------SKNVSIYKAQASALEQHAAPNCKV 127 (320)
Q Consensus 82 aDvVi~~ag~~-------------------~~~~~~r~~~~---------------~~n~~~~~~i~~~i~~~~~~~~~v 127 (320)
||+||+++|.. +++|.+|..+. .+|++++.++++.|+++| |++|+
T Consensus 77 AD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~-P~A~~ 155 (477)
T 3u95_A 77 ADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMA-PKAYL 155 (477)
T ss_dssp CSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHC-TTCEE
T ss_pred CCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhC-CCeEE
Confidence 99999999752 24444433321 258999999999999999 99999
Q ss_pred EEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEc-CCCCccccccccccc
Q 020875 128 LVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWG-NHSSSQYPDVNHATV 201 (320)
Q Consensus 128 iv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G-~hg~~~~~~~S~~~v 201 (320)
|++|||++++|++++++ ++ .|++|.|+.- +....+++.||+++++|+..+ .| || +.+|..++.
T Consensus 156 in~tNP~~i~t~a~~~~-~~---~k~vGlC~~~--~~~~~~~~~Lg~~~~~v~~~~-~GlNH----~~w~~~~~~ 219 (477)
T 3u95_A 156 MQTANPVFEITQAVRRW-TG---ANIIGFCHGV--AGVYEVFERLGLDPEEVDWQV-AGVNH----GIWLNRFRY 219 (477)
T ss_dssp EECSSCHHHHHHHHHHH-HC---CCEEEECCGG--GHHHHHHHHTTCCGGGEEEEE-EEETT----EEEEEEEEE
T ss_pred EEecChHHHHHHHHHHh-CC---CCeEEECCCH--HHHHHHHHHhCCCHHHcEEEE-eecCC----Ceeeeeeee
Confidence 99999999999999986 44 3688998654 344567788999999999775 68 55 566655555
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-12 Score=119.29 Aligned_cols=160 Identities=17% Similarity=0.160 Sum_probs=109.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++|||+||||+|++|++++..|++.|+ +|++++++.....+.....|+.+. .++.++++++|
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~Dl~d~-----------~~~~~~~~~~d 79 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQGR-------TVRGFDLRPSGTGGEEVVGSLEDG-----------QALSDAIMGVS 79 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTC-------CEEEEESSCCSSCCSEEESCTTCH-----------HHHHHHHTTCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-------EEEEEeCCCCCCCccEEecCcCCH-----------HHHHHHHhCCC
Confidence 458999999999999999999999987 799999875321122222333332 25677889999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH------HHHHHCCCCCCCcEEEee
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL------ILKEFAPSIPAKNITCLT 157 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~------~~~~~~~~~~~~~i~~~t 157 (320)
+|||+|+..........+.+..|+..+.++++.+++.+ . .++|++|+. .+... .+.+ ....++...|+.+
T Consensus 80 ~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~-~~~V~~SS~-~vyg~~~~~~~~~~E-~~~~~~~~~Y~~s 155 (347)
T 4id9_A 80 AVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAG-V-RRFVFASSG-EVYPENRPEFLPVTE-DHPLCPNSPYGLT 155 (347)
T ss_dssp EEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTT-C-SEEEEEEEG-GGTTTTSCSSSSBCT-TSCCCCCSHHHHH
T ss_pred EEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcC-C-CeEEEECCH-HHhCCCCCCCCCcCC-CCCCCCCChHHHH
Confidence 99999987643333446788999999999999999865 2 356666642 11100 0001 0112233457888
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEE
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIW 185 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~ 185 (320)
+....++...+++..+++..-++...|+
T Consensus 156 K~~~E~~~~~~~~~~~~~~~ilRp~~v~ 183 (347)
T 4id9_A 156 KLLGEELVRFHQRSGAMETVILRFSHTQ 183 (347)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred HHHHHHHHHHHHHhcCCceEEEccceEe
Confidence 8888888888888889988888888888
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-11 Score=111.68 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=105.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc-hhHHHHHHHhc---ccCCCCcceEEeCChh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-ALNGVKMELVD---AAFPLLKGVVATTDAV 76 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~-~~~~~~~dl~~---~~~~~~~~v~~~~~~~ 76 (320)
|..+++||+||||+||||++++..|+++|+ +|+.++++.+.. ++.. ..++.. .......++....++.
T Consensus 1 ~~~~~~~vlVTGatGfIG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~ 72 (337)
T 2c29_D 1 MGSQSETVCVTGASGFIGSWLVMRLLERGY-------TVRATVRDPTNVKKVKH-LLDLPKAETHLTLWKADLADEGSFD 72 (337)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCTTCHHHHHH-HHTSTTHHHHEEEEECCTTSTTTTH
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEECCcchhHHHHH-HHhcccCCCeEEEEEcCCCCHHHHH
Confidence 777888999999999999999999999887 788777654210 1110 001110 0000112333334567
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCH-HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH-----HHHHHCC----
Q 020875 77 EACTGVNIAVMVGGFPRKEGMER-KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFAP---- 146 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~~~~r-~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~-----~~~~~~~---- 146 (320)
++++++|+|||+|+.......+. .+++..|+..+.++++.+.+.. .-.++|++|+...+... .+.+...
T Consensus 73 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~-~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~ 151 (337)
T 2c29_D 73 EAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAK-TVRRLVFTSSAGTVNIQEHQLPVYDESCWSDME 151 (337)
T ss_dssp HHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHS-CCCEEEEECCGGGTSCSSSCCSEECTTCCCCHH
T ss_pred HHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC-CccEEEEeeeHhhcccCCCCCcccCcccCCchh
Confidence 78899999999998542212222 3578899999999999998874 22466766654311000 0000000
Q ss_pred ----CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 147 ----SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 147 ----~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
..++...|+.++....++...+++..|++...++...|+|..
T Consensus 152 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~ 197 (337)
T 2c29_D 152 FCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPF 197 (337)
T ss_dssp HHHHHCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCC
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCC
Confidence 001112356666666666666777778888888888888864
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=113.88 Aligned_cols=168 Identities=13% Similarity=0.085 Sum_probs=103.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~aD 83 (320)
+|||+||||+|++|++++..|+++|+ +|++++++.. +.. ++.+... ....++....++.++++++|
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~----~l~~~~~~~~~~Dl~d~~~~~~~~~~~d 79 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGH-------DLVLIHRPSS--QIQ----RLAYLEPECRVAEMLDHAGLERALRGLD 79 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECTTS--CGG----GGGGGCCEEEECCTTCHHHHHHHTTTCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEecChH--hhh----hhccCCeEEEEecCCCHHHHHHHHcCCC
Confidence 47999999999999999999999886 8999998642 221 1111110 01122222234667889999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh--HH--HHHHHCCCCCC----CcEEE
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN--AL--ILKEFAPSIPA----KNITC 155 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~--~~--~~~~~~~~~~~----~~i~~ 155 (320)
+|||+|+.......+..+++..|+..+.++++.+.+.+ . .++|++|+..-.- .. ...+. ....+ ...|+
T Consensus 80 ~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~~v~~SS~~~~~~~~~~~~~~E~-~~~~p~~~~~~~Y~ 156 (342)
T 2x4g_A 80 GVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQAR-V-PRILYVGSAYAMPRHPQGLPGHEG-LFYDSLPSGKSSYV 156 (342)
T ss_dssp EEEEC------------CHHHHHHHHHHHHHHHHHHHT-C-SCEEEECCGGGSCCCTTSSCBCTT-CCCSSCCTTSCHHH
T ss_pred EEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-CeEEEECCHHhhCcCCCCCCCCCC-CCCCccccccChHH
Confidence 99999986542223455678899999999999999875 2 3577776542110 00 00010 01111 23567
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.++....++...+++. |++..-++...|+|...
T Consensus 157 ~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~ 189 (342)
T 2x4g_A 157 LCKWALDEQAREQARN-GLPVVIGIPGMVLGELD 189 (342)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCC
T ss_pred HHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCC
Confidence 7777777777777776 88888888888888644
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-12 Score=115.85 Aligned_cols=175 Identities=13% Similarity=0.042 Sum_probs=114.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-------c-CCCCcceEEeC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-------A-FPLLKGVVATT 73 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-------~-~~~~~~v~~~~ 73 (320)
..++|||+||||+||+|++++..|++.|+ +|+.+++..... .....++... . .....++....
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 92 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQ-------VVIGLDNFSTGH--QYNLDEVKTLVSTEQWSRFCFIEGDIRDLT 92 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCC--HHHHHHHHHTSCHHHHTTEEEEECCTTCHH
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCCCCc--hhhhhhhhhccccccCCceEEEEccCCCHH
Confidence 34568999999999999999999999887 899999864211 1111222211 0 00112332233
Q ss_pred ChhhhcCCCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCC
Q 020875 74 DAVEACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPS 147 (320)
Q Consensus 74 ~~~~al~~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~ 147 (320)
++.++++++|+|||+|+..... ..+..+.+..|+..+.++++.+++.+ . .++|++|... +... .+.+. ..
T Consensus 93 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~-~~~v~~SS~~-vyg~~~~~~~~E~-~~ 168 (351)
T 3ruf_A 93 TCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQ-V-QSFTYAASSS-TYGDHPALPKVEE-NI 168 (351)
T ss_dssp HHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-C-SEEEEEEEGG-GGTTCCCSSBCTT-CC
T ss_pred HHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEEecHH-hcCCCCCCCCccC-CC
Confidence 4677889999999999864311 12345678899999999999999875 3 3566666432 1100 00000 00
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
..+...|+.++....++...+++..|++..-+|...|+|...
T Consensus 169 ~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~ 210 (351)
T 3ruf_A 169 GNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQ 210 (351)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCC
Confidence 112335788888888888888888899999999888889654
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-11 Score=109.49 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=104.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-chhHHHHHHHhcc-cC-CCCcceEEeCChhhhcCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDA-AF-PLLKGVVATTDAVEACTG 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~al~~ 81 (320)
++||+||||+||||++++..|+++|+ +|+.++++.+. .++. ...++... .. ....++....++.+++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-------~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 80 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY-------AVNTTVRDPDNQKKVS-HLLELQELGDLKIFRADLTDELSFEAPIAG 80 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC-------EEEEEESCTTCTTTTH-HHHHHGGGSCEEEEECCTTTSSSSHHHHTT
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEEcCcchhhhHH-HHHhcCCCCcEEEEecCCCChHHHHHHHcC
Confidence 36999999999999999999999987 78877665321 1111 11122110 00 011233333456678899
Q ss_pred CcEEEEeCCCCCCCCCC-HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC--CC----------
Q 020875 82 VNIAVMVGGFPRKEGME-RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP--SI---------- 148 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~-r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~--~~---------- 148 (320)
+|+|||+|+.......+ ..+++..|+..+.++++++.+.. .-.++|++|+...+... ..... .+
T Consensus 81 ~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~v~r~V~~SS~~~~~~~--~~~~~~~~~~E~~~~~~~~ 157 (338)
T 2rh8_A 81 CDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAK-SVKRVILTSSAAAVTIN--QLDGTGLVVDEKNWTDIEF 157 (338)
T ss_dssp CSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCT-TCCEEEEECCHHHHHHH--HHTCSCCCCCTTTTTCC--
T ss_pred CCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcC-CcCEEEEEecHHHeecC--CcCCCCcccChhhccchhh
Confidence 99999999854211112 23477899999999999998863 12356666653311111 11000 00
Q ss_pred --CC--Cc-EEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 149 --PA--KN-ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 149 --~~--~~-i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
|. .. .|+.++....++...+++..|++...++...|+|..
T Consensus 158 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~ 202 (338)
T 2rh8_A 158 LTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSS 202 (338)
T ss_dssp -----CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCC
T ss_pred ccccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCC
Confidence 00 11 377777777777777777779988888888888864
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=113.25 Aligned_cols=174 Identities=13% Similarity=0.087 Sum_probs=104.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHh--cCcCCCCCCeEEEEEecCCccchhH-------HHHHHHhcccC-CCCcceEE
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIAR--GVMLGTDQPVILHMLDIPPAAEALN-------GVKMELVDAAF-PLLKGVVA 71 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~--~~~~~~~~~~ev~l~D~~~~~~~~~-------~~~~dl~~~~~-~~~~~v~~ 71 (320)
..++|||+||||+|++|++++..|++ .|+ +|+++|++....... .....+..... ....++..
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 79 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPKA-------KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINN 79 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTTS-------EEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTC
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCCC-------eEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCC
Confidence 34568999999999999999999999 786 899999864210000 00000110000 00122222
Q ss_pred eCChhhh-cCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH---HHHHHCCC
Q 020875 72 TTDAVEA-CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEFAPS 147 (320)
Q Consensus 72 ~~~~~~a-l~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~---~~~~~~~~ 147 (320)
..++.++ ..++|+|||+||.......+..+.+..|+..+.++++.+++.+ +++|++|+ ..+... .+.+. ..
T Consensus 80 ~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~---~~~V~~SS-~~vyg~~~~~~~E~-~~ 154 (362)
T 3sxp_A 80 PLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKK---AKVIYASS-AGVYGNTKAPNVVG-KN 154 (362)
T ss_dssp HHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTT---CEEEEEEE-GGGGCSCCSSBCTT-SC
T ss_pred HHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcC---CcEEEeCc-HHHhCCCCCCCCCC-CC
Confidence 2234455 6899999999997654445677889999999999999998875 45666664 221100 00000 01
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
..+...|+.++....++...+++. ++...++...|+|...
T Consensus 155 ~~p~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~ 194 (362)
T 3sxp_A 155 ESPENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPRE 194 (362)
T ss_dssp CCCSSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTC
T ss_pred CCCCChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCC
Confidence 112234677777666666555554 5666777656788543
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-11 Score=111.38 Aligned_cols=173 Identities=12% Similarity=0.057 Sum_probs=111.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhc
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al 79 (320)
|+.++|||+||||+|++|++++..|++.|+ +|++++++.... .. +..... ....++....++.+++
T Consensus 25 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~--~~----~~~~~v~~~~~Dl~d~~~~~~~~ 91 (379)
T 2c5a_A 25 WPSENLKISITGAGGFIASHIARRLKHEGH-------YVIASDWKKNEH--MT----EDMFCDEFHLVDLRVMENCLKVT 91 (379)
T ss_dssp CTTSCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCSS--SC----GGGTCSEEEECCTTSHHHHHHHH
T ss_pred ccccCCeEEEECCccHHHHHHHHHHHHCCC-------eEEEEECCCccc--hh----hccCCceEEECCCCCHHHHHHHh
Confidence 445678999999999999999999999886 899999864221 10 000000 0011222222456778
Q ss_pred CCCcEEEEeCCCCCCC---CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH---------HHHHC-C
Q 020875 80 TGVNIAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI---------LKEFA-P 146 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~---~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~---------~~~~~-~ 146 (320)
+++|+|||+|+..... ..+..+.+..|+..+.++++.+++.+ . .++|++|... +.... +.+.. .
T Consensus 92 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~-~-~~~V~~SS~~-v~~~~~~~~~~~~~~~E~~~~ 168 (379)
T 2c5a_A 92 EGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-I-KRFFYASSAC-IYPEFKQLETTNVSLKESDAW 168 (379)
T ss_dssp TTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-C-SEEEEEEEGG-GSCGGGSSSSSSCEECGGGGS
T ss_pred CCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEEeehh-eeCCCCCCCccCCCcCcccCC
Confidence 8999999999865321 23466788899999999999998864 2 3666666432 11000 00000 0
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
..++...|+.++....++...+++..+++...++...|+|...
T Consensus 169 ~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~ 211 (379)
T 2c5a_A 169 PAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFG 211 (379)
T ss_dssp SBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCC
Confidence 1122335777777777877778888898888888777788643
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-11 Score=107.84 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=107.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccch---hHHHHHHHhcccCCCCcceEEeCChhhhcCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA---LNGVKMELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~---~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
+++|+||||+|++|++++..|++.|+ +|++.|+++.... +.....|+.+. .+..+++++
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~Dl~d~-----------~~~~~~~~~ 64 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAE-------ILRLADLSPLDPAGPNEECVQCDLADA-----------NAVNAMVAG 64 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEE-------EEEEEESSCCCCCCTTEEEEECCTTCH-----------HHHHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-------EEEEEecCCccccCCCCEEEEcCCCCH-----------HHHHHHHcC
Confidence 45899999999999999999999886 8999998753211 11111233322 256777889
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH----HHHHHHCCCCCCCcEEEee
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCLT 157 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~----~~~~~~~~~~~~~~i~~~t 157 (320)
+|+|||+||... .....+.+..|+.....+++.+++.+ . .++|++|+-...-. ..+.+ ....++...|+.+
T Consensus 65 ~D~vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~-~-~~iv~~SS~~~~g~~~~~~~~~e-~~~~~~~~~Y~~s 139 (267)
T 3rft_A 65 CDGIVHLGGISV--EKPFEQILQGNIIGLYNLYEAARAHG-Q-PRIVFASSNHTIGYYPQTERLGP-DVPARPDGLYGVS 139 (267)
T ss_dssp CSEEEECCSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTT-C-CEEEEEEEGGGGTTSBTTSCBCT-TSCCCCCSHHHHH
T ss_pred CCEEEECCCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEEcchHHhCCCCCCCCCCC-CCCCCCCChHHHH
Confidence 999999999753 34456788999999999999998875 3 46777764321100 00000 0112333457888
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
+.....+...+++.++++...|+.-.|.|.
T Consensus 140 K~~~e~~~~~~a~~~g~~~~~vr~~~v~~~ 169 (267)
T 3rft_A 140 KCFGENLARMYFDKFGQETALVRIGSCTPE 169 (267)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECBCSSS
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEeecccCC
Confidence 888888888889898887666665444454
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=106.29 Aligned_cols=164 Identities=12% Similarity=0.087 Sum_probs=112.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
+|||+||||+|++|++++..|+++|+ +|+.+++++ .... +... .....++. ..++.++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~--~~~~-----~~~~-~~~~~Dl~-~~~~~~~~~~~d~ 65 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN-------TPIILTRSI--GNKA-----INDY-EYRVSDYT-LEDLINQLNDVDA 65 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCC--C----------CC-EEEECCCC-HHHHHHHTTTCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-------EEEEEeCCC--Cccc-----CCce-EEEEcccc-HHHHHHhhcCCCE
Confidence 36999999999999999999999987 899999863 2111 1111 11123444 4567788999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEeehhh
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTRLD 160 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~t~ld 160 (320)
|||+|+..... +..+.+..|+..++++++.+++.+ . .++|.+|+ ..+... .+.+. ....+...++.++..
T Consensus 66 Vih~a~~~~~~--~~~~~~~~n~~~~~~ll~a~~~~~-~-~r~v~~SS-~~vyg~~~~~~~~E~-~~~~p~~~Y~~sK~~ 139 (311)
T 3m2p_A 66 VVHLAATRGSQ--GKISEFHDNEILTQNLYDACYENN-I-SNIVYAST-ISAYSDETSLPWNEK-ELPLPDLMYGVSKLA 139 (311)
T ss_dssp EEECCCCCCSS--SCGGGTHHHHHHHHHHHHHHHHTT-C-CEEEEEEE-GGGCCCGGGCSBCTT-SCCCCSSHHHHHHHH
T ss_pred EEEccccCCCC--ChHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEEcc-HHHhCCCCCCCCCCC-CCCCCCchhHHHHHH
Confidence 99999875432 445567899999999999999875 3 25666664 211100 00010 111223457888888
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEcCCCC
Q 020875 161 HNRALGQISEKLNVQVSDVKNVIIWGNHSS 190 (320)
Q Consensus 161 ~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~ 190 (320)
..++...+++..+++..-++...|+|....
T Consensus 140 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~ 169 (311)
T 3m2p_A 140 CEHIGNIYSRKKGLCIKNLRFAHLYGFNEK 169 (311)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECEEECSCC-
T ss_pred HHHHHHHHHHHcCCCEEEEeeCceeCcCCC
Confidence 888888888888999888998888896544
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-12 Score=110.72 Aligned_cols=166 Identities=11% Similarity=0.076 Sum_probs=100.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|+ ++|||+||||+|++|++++..|++.|+ +|+++++++. ++... .........++....++.++++
T Consensus 1 M~-~m~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~~----~~~~~~~~~Dl~d~~~~~~~~~ 66 (227)
T 3dhn_A 1 ME-KVKKIVLIGASGFVGSALLNEALNRGF-------EVTAVVRHPE--KIKIE----NEHLKVKKADVSSLDEVCEVCK 66 (227)
T ss_dssp ---CCCEEEEETCCHHHHHHHHHHHHTTTC-------EEEEECSCGG--GCCCC----CTTEEEECCCTTCHHHHHHHHT
T ss_pred CC-CCCEEEEEcCCchHHHHHHHHHHHCCC-------EEEEEEcCcc--cchhc----cCceEEEEecCCCHHHHHHHhc
Confidence 55 468999999999999999999999886 8999998742 22110 0000001122222235678889
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH--HHHHHHCCCCCCCcEEEeeh
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA--LILKEFAPSIPAKNITCLTR 158 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~--~~~~~~~~~~~~~~i~~~t~ 158 (320)
++|+|||+||... +..+++..|+....++++.+++.+ . .++|.+|.-...-. ....+..+ ..+...++.++
T Consensus 67 ~~d~vi~~a~~~~----~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~Ss~~~~~~~~~~~~~~~~-~~p~~~Y~~sK 139 (227)
T 3dhn_A 67 GADAVISAFNPGW----NNPDIYDETIKVYLTIIDGVKKAG-V-NRFLMVGGAGSLFIAPGLRLMDSG-EVPENILPGVK 139 (227)
T ss_dssp TCSEEEECCCC----------CCSHHHHHHHHHHHHHHHTT-C-SEEEEECCSTTSEEETTEEGGGTT-CSCGGGHHHHH
T ss_pred CCCEEEEeCcCCC----CChhHHHHHHHHHHHHHHHHHHhC-C-CEEEEeCChhhccCCCCCccccCC-cchHHHHHHHH
Confidence 9999999998642 122356789999999999999875 3 36676664321000 00000001 11233566666
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
....++...+++..+++..-++...|+|.
T Consensus 140 ~~~e~~~~~~~~~~~~~~~ilrp~~v~g~ 168 (227)
T 3dhn_A 140 ALGEFYLNFLMKEKEIDWVFFSPAADMRP 168 (227)
T ss_dssp HHHHHHHHTGGGCCSSEEEEEECCSEEES
T ss_pred HHHHHHHHHHhhccCccEEEEeCCcccCC
Confidence 66666666676666776666666556675
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-11 Score=109.24 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=108.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc-ccC-CCCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AAF-PLLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~-~~~-~~~~~v~~~~~~~~a 78 (320)
|.+++|||+||||+|++|++++..|++.|.. .+|+.+|+.......... .++.. ... ....++.....+.++
T Consensus 20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~-----~~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~Dl~d~~~~~~~ 93 (346)
T 4egb_A 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYET-----YKIINFDALTYSGNLNNV-KSIQDHPNYYFVKGEIQNGELLEHV 93 (346)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHHHCTT-----EEEEEEECCCTTCCGGGG-TTTTTCTTEEEEECCTTCHHHHHHH
T ss_pred cccCCCeEEEECCccHHHHHHHHHHHhhCCC-----cEEEEEeccccccchhhh-hhhccCCCeEEEEcCCCCHHHHHHH
Confidence 4556789999999999999999999998831 278888875311111110 01100 000 001222222345566
Q ss_pred cCC--CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH-----HHHHHCCCCC
Q 020875 79 CTG--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFAPSIP 149 (320)
Q Consensus 79 l~~--aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~-----~~~~~~~~~~ 149 (320)
+++ +|+|||+|+..... ..+..+.+..|+..+.++++.+++.+ . .++|++|+.. +... .+.+ .....
T Consensus 94 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~-~~~v~~SS~~-vy~~~~~~~~~~E-~~~~~ 169 (346)
T 4egb_A 94 IKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYP-H-IKLVQVSTDE-VYGSLGKTGRFTE-ETPLA 169 (346)
T ss_dssp HHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHST-T-SEEEEEEEGG-GGCCCCSSCCBCT-TSCCC
T ss_pred HhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcC-C-CEEEEeCchH-HhCCCCcCCCcCC-CCCCC
Confidence 776 99999999875321 13445678999999999999999875 3 3566666421 1000 0001 01112
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
+...|+.++....++...+++..+++..-++...|+|...
T Consensus 170 p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~ 209 (346)
T 4egb_A 170 PNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ 209 (346)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC
Confidence 2345778888888888888888899988899888899654
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-11 Score=111.02 Aligned_cols=175 Identities=11% Similarity=0.054 Sum_probs=109.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhc--CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~--~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~ 77 (320)
|+ .||||+||||+|++|++++..|++. |+ +|+++|++....... ...++.+... ....++....++.+
T Consensus 1 Ms-~m~~vlVTGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~ 71 (348)
T 1oc2_A 1 MS-QFKNIIVTGGAGFIGSNFVHYVYNNHPDV-------HVTVLDKLTYAGNKA-NLEAILGDRVELVVGDIADAELVDK 71 (348)
T ss_dssp ---CCSEEEEETTTSHHHHHHHHHHHHHCTTC-------EEEEEECCCTTCCGG-GTGGGCSSSEEEEECCTTCHHHHHH
T ss_pred CC-cCcEEEEeCCccHHHHHHHHHHHHhCCCC-------EEEEEeCCCCCCChh-HHhhhccCCeEEEECCCCCHHHHHH
Confidence 54 3679999999999999999999987 65 899999853111111 0111111000 00122222234567
Q ss_pred hcCCCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH----------------H
Q 020875 78 ACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----------------L 139 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~----------------~ 139 (320)
+++++|+|||+|+..... ..+..+.+..|+..+.++++.+.+.+ +++|++|+.. +.. .
T Consensus 72 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~---~~~v~~SS~~-vyg~~~~~~~~~~~~~~~~~ 147 (348)
T 1oc2_A 72 LAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD---IRFHHVSTDE-VYGDLPLREDLPGHGEGPGE 147 (348)
T ss_dssp HHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT---CEEEEEEEGG-GGCCBCCGGGSTTTTCSTTS
T ss_pred HhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhC---CeEEEecccc-eeCCCcccccccccccccCC
Confidence 789999999999865310 12345678899999999999999875 3677776421 100 0
Q ss_pred HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.+.+ ....++...|+.++....++...+++.++++..-++...|+|...
T Consensus 148 ~~~E-~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~ 196 (348)
T 1oc2_A 148 KFTA-ETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ 196 (348)
T ss_dssp SBCT-TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred CcCC-CCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCC
Confidence 0001 011223345777888888887778888898888888777788643
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-11 Score=114.03 Aligned_cols=171 Identities=13% Similarity=0.045 Sum_probs=108.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC-cCCCCCCeEEEEEecCCccchhHHHHHHHh-cccC-CCCcceEEeCChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELV-DAAF-PLLKGVVATTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~-~~~~-~~~~~v~~~~~~~~al~ 80 (320)
++|||+||||+|++|++++..|++.| + +|++++++..... . .+. .... ....++....++.++++
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-------~V~~~~r~~~~~~-~----~l~~~~~v~~~~~Dl~d~~~l~~~~~ 98 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVN-------QVHVVDNLLSAEK-I----NVPDHPAVRFSETSITDDALLASLQD 98 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCS-------EEEEECCCTTCCG-G----GSCCCTTEEEECSCTTCHHHHHHCCS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCc-------eEEEEECCCCCch-h----hccCCCceEEEECCCCCHHHHHHHhh
Confidence 35799999999999999999999988 6 8999998642110 0 010 0000 00112222224566788
Q ss_pred CCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhh-cCCCeEEEEEcCcchhhHH----HHH--HHCC--CC-
Q 020875 81 GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQH-AAPNCKVLVVANPANTNAL----ILK--EFAP--SI- 148 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~-~~~~~~viv~snP~~~~~~----~~~--~~~~--~~- 148 (320)
++|+|||+|+..... ..+..+.+..|+..+.++++.+++. + . .++|++|... +... .+. +... ..
T Consensus 99 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~-~-~~~V~~SS~~-vyg~~~~~~~~~~E~~~~~~~~ 175 (377)
T 2q1s_A 99 EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKR-L-KKVVYSAAGC-SIAEKTFDDAKATEETDIVSLH 175 (377)
T ss_dssp CCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSS-C-CEEEEEEEC---------------CCCCCCCSS
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-C-CeEEEeCCHH-HcCCCCCCCcCccccccccccc
Confidence 999999999864311 1245567889999999999999876 3 2 3566666432 1110 011 1100 11
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.+...|+.++....++...+++..+++...++...|+|...
T Consensus 176 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~ 216 (377)
T 2q1s_A 176 NNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE 216 (377)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence 22335777888888887778888899888888877888643
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-11 Score=109.20 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=109.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC--cCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C-CCCcceEEeCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGV--MLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~--~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~al~ 80 (320)
.|||+||||+|++|++++..|++.| + +|+++|+.......... .++.... . ....++....++.+++.
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~-------~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 74 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDW-------EVINIDKLGYGSNPANL-KDLEDDPRYTFVKGDVADYELVKELVR 74 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTC-------EEEEEECCCTTCCGGGG-TTTTTCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCC-------EEEEEecCcccCchhHH-hhhccCCceEEEEcCCCCHHHHHHHhh
Confidence 4799999999999999999999876 4 88988875311111110 1111100 0 00112222223456678
Q ss_pred CCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEE
Q 020875 81 GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNIT 154 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~ 154 (320)
++|+|||+|+..... ..+..+++..|+..+.++++.+.+.. ...++|++|+.. +... .+.+ ....++...|
T Consensus 75 ~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS~~-vyg~~~~~~~~E-~~~~~~~~~Y 151 (336)
T 2hun_A 75 KVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRREN-PEVRFVHVSTDE-VYGDILKGSFTE-NDRLMPSSPY 151 (336)
T ss_dssp TCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHC-TTSEEEEEEEGG-GGCCCSSSCBCT-TBCCCCCSHH
T ss_pred CCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEeccHH-HHCCCCCCCcCC-CCCCCCCCcc
Confidence 999999999865310 12345678899999999999999884 335777776431 1000 0000 0112333457
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
+.++....++...+++.++++..-++...|+|...
T Consensus 152 ~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~ 186 (336)
T 2hun_A 152 SATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQ 186 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCC
Confidence 88888888888888888898888888777888653
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=7e-11 Score=107.62 Aligned_cols=167 Identities=11% Similarity=0.138 Sum_probs=107.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG-- 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~-- 81 (320)
++++|+||||+|++|++++..|+++|+ +|++++++...+. + ... ....++....++.+++++
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~-------l-~~~-~~~~Dl~d~~~~~~~~~~~~ 74 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQNV-------EVFGTSRNNEAKL-------P-NVE-MISLDIMDSQRVKKVISDIK 74 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCTTCCC-------T-TEE-EEECCTTCHHHHHHHHHHHC
T ss_pred CcceEEEECCCChHHHHHHHHHHHCCC-------EEEEEecCCcccc-------c-eee-EEECCCCCHHHHHHHHHhcC
Confidence 468999999999999999999999887 8999998642210 1 000 001122112234556665
Q ss_pred CcEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH------HHHHHCCCCCCCcE
Q 020875 82 VNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL------ILKEFAPSIPAKNI 153 (320)
Q Consensus 82 aDvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~------~~~~~~~~~~~~~i 153 (320)
+|+|||+|+.... ...+..+.+..|+..+.++++.+++.. ...++|++|+.. +... .+.+ ....++...
T Consensus 75 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS~~-v~g~~~~~~~~~~E-~~~~~~~~~ 151 (321)
T 2pk3_A 75 PDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSN-LDCRILTIGSSE-EYGMILPEESPVSE-ENQLRPMSP 151 (321)
T ss_dssp CSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT-CCCEEEEEEEGG-GTBSCCGGGCSBCT-TSCCBCCSH
T ss_pred CCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEccHH-hcCCCCCCCCCCCC-CCCCCCCCc
Confidence 8999999986531 123456788999999999999997763 235677776432 1000 0001 011223335
Q ss_pred EEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 154 ~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
|+.++....++...+++..|++..-++...|+|...
T Consensus 152 Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~ 187 (321)
T 2pk3_A 152 YGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQ 187 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCC
Confidence 777888888887778888898888888777888654
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=5.2e-11 Score=109.12 Aligned_cols=174 Identities=12% Similarity=-0.040 Sum_probs=107.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cC-CCCcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF-PLLKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~al~~ 81 (320)
+++||+||||+|++|++++..|++.|+ +|++++++....... ...++... .. ....++....++.+++++
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 84 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGY-------RVHGLVARRSSDTRW-RLRELGIEGDIQYEDGDMADACSVQRAVIK 84 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCH-HHHHTTCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCCcccccc-chhhccccCceEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999999999886 899999864321111 11111100 00 001122222234555665
Q ss_pred --CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcE
Q 020875 82 --VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNI 153 (320)
Q Consensus 82 --aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i 153 (320)
.|+|||+|+..... ..+..+.+..|+..+.++++.+++.+ ...++|++|+.. +... .+.+. ....+...
T Consensus 85 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~SS~~-v~g~~~~~~~~E~-~~~~p~~~ 161 (335)
T 1rpn_A 85 AQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS-PETRFYQASTSE-MFGLIQAERQDEN-TPFYPRSP 161 (335)
T ss_dssp HCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTSEEEEEEEGG-GGCSCSSSSBCTT-SCCCCCSH
T ss_pred cCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeCHH-HhCCCCCCCCCcc-cCCCCCCh
Confidence 59999999865321 23456778899999999999999875 224677776532 1100 00010 11112235
Q ss_pred EEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 154 TCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 154 ~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
|+.++....++...+++.++++..-++...++|..
T Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~ 196 (335)
T 1rpn_A 162 YGVAKLYGHWITVNYRESFGLHASSGILFNHESPL 196 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred hHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCC
Confidence 77788888888888888888887777766667753
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=105.80 Aligned_cols=173 Identities=12% Similarity=0.089 Sum_probs=105.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc---ccC-CC-CcceEEeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD---AAF-PL-LKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~---~~~-~~-~~~v~~~~~~~~al 79 (320)
.++|+||||+|++|++++..|++.|+ +|++++++. ++.......+.+ ... .. ..++....++.+++
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~ 81 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLEHGY-------KVRGTARSA--SKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVI 81 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTT
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEeCCc--ccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHH
Confidence 47999999999999999999999887 899999863 222211111110 000 01 12332233456677
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH-------HHHHH--------
Q 020875 80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-------ILKEF-------- 144 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~-------~~~~~-------- 144 (320)
+++|+|||+|+.... ..+..+.+..|+..+.++++.+.+.. ...++|++|+....-.. .+.+.
T Consensus 82 ~~~d~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~ 159 (342)
T 1y1p_A 82 KGAAGVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATP-SVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESID 159 (342)
T ss_dssp TTCSEEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCT-TCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHH
T ss_pred cCCCEEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCC-CCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhh
Confidence 899999999987542 24566788999999999999998532 22467777654211000 00000
Q ss_pred ----CCCC-C--CCcEEEeehhhHHHHHHHHHHHc--CCCCCCeeeeEEEcCC
Q 020875 145 ----APSI-P--AKNITCLTRLDHNRALGQISEKL--NVQVSDVKNVIIWGNH 188 (320)
Q Consensus 145 ----~~~~-~--~~~i~~~t~ld~~r~~~~~a~~l--~v~~~~v~~~~v~G~h 188 (320)
.... | +...|+.++....++...+++.+ ++....++...|+|..
T Consensus 160 ~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~ 212 (342)
T 1y1p_A 160 KAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTI 212 (342)
T ss_dssp HHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCC
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCC
Confidence 0000 0 11247777877778777777776 4444455655667854
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=107.24 Aligned_cols=173 Identities=13% Similarity=0.079 Sum_probs=110.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc---cC-CCCcceEEeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA---AF-PLLKGVVATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~---~~-~~~~~v~~~~~~~~al 79 (320)
.+|+|+||||+|++|++++..|++.|+ +|++++++... ......++... .. ....++....++.+++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGY-------DVVIADNLVNS--KREAIARIEKITGKTPAFHETDVSDERALARIF 74 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECCCSSS--CTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHH
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCC-------cEEEEecCCcc--hHHHHHHHHhhcCCCceEEEeecCCHHHHHHHH
Confidence 457999999999999999999999987 89999986422 21111122111 10 1112333333455666
Q ss_pred C--CCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCC
Q 020875 80 T--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAK 151 (320)
Q Consensus 80 ~--~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~ 151 (320)
+ ++|+|||+|+..... .....+.+..|+..+.++++.+++.+ . .++|++|+.. +... .+.+ ....++.
T Consensus 75 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~iv~~SS~~-~~g~~~~~~~~e-~~~~~~~ 150 (341)
T 3enk_A 75 DAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERA-V-KRIVFSSSAT-VYGVPERSPIDE-TFPLSAT 150 (341)
T ss_dssp HHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEEEEGG-GBCSCSSSSBCT-TSCCBCS
T ss_pred hccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCC-C-CEEEEEecce-EecCCCCCCCCC-CCCCCCC
Confidence 6 899999999875311 12344678899999999999999875 3 3666666421 1100 0000 0111223
Q ss_pred cEEEeehhhHHHHHHHHHHHcC-CCCCCeeeeEEEcCCC
Q 020875 152 NITCLTRLDHNRALGQISEKLN-VQVSDVKNVIIWGNHS 189 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~-v~~~~v~~~~v~G~hg 189 (320)
..|+.++....++...+++.++ ++..-++...|+|.+.
T Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~ 189 (341)
T 3enk_A 151 NPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHE 189 (341)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCT
T ss_pred ChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCcc
Confidence 3578888888888888888876 7777778777888753
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.3e-11 Score=109.14 Aligned_cols=175 Identities=15% Similarity=0.117 Sum_probs=110.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc--chhHHHHHHHhc---ccC-CCCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVD---AAF-PLLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~--~~~~~~~~dl~~---~~~-~~~~~v~~~~~~~~ 77 (320)
++|||+||||+|++|++++..|++.|+ +|++++++... +.+......+.. ... ....++....++.+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 98 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLDQ-------KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNN 98 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHH
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHH
Confidence 467999999999999999999999886 89999986421 112111111100 000 00112222224567
Q ss_pred hcCCCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH----HHHHCCCCCCC
Q 020875 78 ACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPAK 151 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~----~~~~~~~~~~~ 151 (320)
+++++|+|||+|+..... ..+..+.+..|+..+.++++.+.+.+ . .++|++|+.. +.... +.+. ....+.
T Consensus 99 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~~v~~SS~~-~~~~~~~~~~~E~-~~~~~~ 174 (352)
T 1sb8_A 99 ACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-V-QSFTYAASSS-TYGDHPGLPKVED-TIGKPL 174 (352)
T ss_dssp HHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-C-SEEEEEEEGG-GGTTCCCSSBCTT-CCCCCC
T ss_pred HhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEeccHH-hcCCCCCCCCCCC-CCCCCC
Confidence 788999999999864311 12355678899999999999998864 2 3567666432 11000 0000 001123
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
..|+.++....++...+++..+++...++...|+|...
T Consensus 175 ~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~ 212 (352)
T 1sb8_A 175 SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ 212 (352)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCC
Confidence 35777888788887778888899988888777889653
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=104.04 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=107.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|+||+||||+|++|++++..|++.|. .+.+.+++. ..... +.........++.. .++.++++++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-------~v~~~~~~~--~~~~~----~~~~~~~~~~Dl~~-~~~~~~~~~~d~ 66 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESNE-------IVVIDNLSS--GNEEF----VNEAARLVKADLAA-DDIKDYLKGAEE 66 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTSC-------EEEECCCSS--CCGGG----SCTTEEEECCCTTT-SCCHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-------EEEEEcCCC--CChhh----cCCCcEEEECcCCh-HHHHHHhcCCCE
Confidence 35899999999999999999998874 444444332 11110 00000011122322 356788899999
Q ss_pred EEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEeeh
Q 020875 85 AVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTR 158 (320)
Q Consensus 85 Vi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~t~ 158 (320)
|||+|+.+.. ...+..+.+..|+..+.++++.+++.+ . .++|++|+.. +... .+.+ ....++...|+.++
T Consensus 67 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~-~~iv~~SS~~-vyg~~~~~~~~E-~~~~~~~~~Y~~sK 142 (313)
T 3ehe_A 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG-V-SRIVFTSTST-VYGEAKVIPTPE-DYPTHPISLYGASK 142 (313)
T ss_dssp EEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHT-C-CEEEEECCGG-GGCSCSSSSBCT-TSCCCCCSHHHHHH
T ss_pred EEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CeEEEeCchH-HhCcCCCCCCCC-CCCCCCCCHHHHHH
Confidence 9999986532 234567788999999999999998875 2 3677776532 1100 0000 01122334578888
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
....++...+++.++++..-++...|+|...
T Consensus 143 ~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~ 173 (313)
T 3ehe_A 143 LACEALIESYCHTFDMQAWIYRFANVIGRRS 173 (313)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSCEESTTC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeccccCcCC
Confidence 8888888888999999888888888888644
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-11 Score=113.32 Aligned_cols=167 Identities=10% Similarity=0.078 Sum_probs=106.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhc-ccC-CCCcceE-EeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AAF-PLLKGVV-ATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~-~~~-~~~~~v~-~~~~~~~al 79 (320)
++|||+||||+||+|++++..|++. |+ +|++++++.. ++.. +.. ... ....++. ....+.+++
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~--~~~~----~~~~~~v~~~~~Dl~~d~~~~~~~~ 89 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDW-------EVFGMDMQTD--RLGD----LVKHERMHFFEGDITINKEWVEYHV 89 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSC-------EEEEEESCCT--TTGG----GGGSTTEEEEECCTTTCHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCC-------EEEEEeCChh--hhhh----hccCCCeEEEeCccCCCHHHHHHHh
Confidence 4579999999999999999999987 76 8999998642 2211 111 000 0112222 222455678
Q ss_pred CCCcEEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH----HHHHCCCC-----
Q 020875 80 TGVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSI----- 148 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~----~~~~~~~~----- 148 (320)
+++|+|||+|+...... .+..+.+..|+..+.++++.+++.+ .++|++|+. .+.... +.+.....
T Consensus 90 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~---~~~v~~SS~-~vyg~~~~~~~~e~~~~~~~~p~ 165 (372)
T 3slg_A 90 KKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG---KHLVFPSTS-EVYGMCADEQFDPDASALTYGPI 165 (372)
T ss_dssp HHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT---CEEEEECCG-GGGBSCCCSSBCTTTCCEEECCT
T ss_pred ccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC---CcEEEeCcH-HHhCCCCCCCCCccccccccCCC
Confidence 89999999998654211 2345677899999999999999875 467777753 221000 00000000
Q ss_pred -CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 149 -PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 149 -~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
++...|+.++....++...+++. +++..-+|...|+|..
T Consensus 166 ~~p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~ 205 (372)
T 3slg_A 166 NKPRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPG 205 (372)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSS
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCC
Confidence 12225777778777777777776 8887888877778865
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.3e-11 Score=108.89 Aligned_cols=173 Identities=12% Similarity=0.095 Sum_probs=109.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C-CCCcceEEeCChhhhcCC-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVEACTG- 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~al~~- 81 (320)
||||+||||+|++|++++..|++.|+ +|+++|+... ........++.... . ....++....++.+++++
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~ 72 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGI-------DLIVFDNLSR-KGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKY 72 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCS-TTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCC-------EEEEEeCCCc-cCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhcc
Confidence 36999999999999999999999886 8999987421 11111112222211 0 011222222345566777
Q ss_pred -CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH------------------
Q 020875 82 -VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI------------------ 140 (320)
Q Consensus 82 -aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~------------------ 140 (320)
+|+|||+|+..... ..+..+.+..|+..+.++++.+.+.. ...++|++|+.. +....
T Consensus 73 ~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~~~~iv~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~ 150 (347)
T 1orr_A 73 MPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN-SNCNIIYSSTNK-VYGDLEQYKYNETETRYTCVDKP 150 (347)
T ss_dssp CCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEEEGG-GGTTCTTSCEEECSSCEEETTCT
T ss_pred CCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEeccHH-HhCCCCcCCcccccccccccccc
Confidence 99999999864311 12445678899999999999999986 434677777532 11000
Q ss_pred --HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 141 --LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 141 --~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
+.+. ...++...|+.++....++...+++.+|++...++...|+|..
T Consensus 151 ~~~~e~-~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~ 199 (347)
T 1orr_A 151 NGYDES-TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGR 199 (347)
T ss_dssp TCBCTT-SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred cCcccc-CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcC
Confidence 0000 0112233577788888888788888889888888877778864
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8.8e-10 Score=99.85 Aligned_cols=165 Identities=14% Similarity=0.101 Sum_probs=109.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~aDv 84 (320)
|||+||||+|++|++++..|+++|+ +|++++++... ... ..+... ....++.... +.+++++ |+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~----~~~~~~~~~~~Dl~d~~-~~~~~~~-d~ 65 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY-------EVVVVDNLSSG--RRE----FVNPSAELHVRDLKDYS-WGAGIKG-DV 65 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECCCSSC--CGG----GSCTTSEEECCCTTSTT-TTTTCCC-SE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-------EEEEEeCCCCC--chh----hcCCCceEEECccccHH-HHhhcCC-CE
Confidence 6899999999999999999999987 89999986421 110 001100 0112222222 4566677 99
Q ss_pred EEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEeeh
Q 020875 85 AVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTR 158 (320)
Q Consensus 85 Vi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~t~ 158 (320)
|||+|+.+.. ...+....+..|+..+.++++.+++.+ . .++|++|+.. +... .+.+ ....++...|+.++
T Consensus 66 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~iv~~SS~~-vyg~~~~~~~~e-~~~~~p~~~Y~~sK 141 (312)
T 3ko8_A 66 VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-V-RTVVFASSST-VYGDADVIPTPE-EEPYKPISVYGAAK 141 (312)
T ss_dssp EEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHT-C-CEEEEEEEGG-GGCSCSSSSBCT-TSCCCCCSHHHHHH
T ss_pred EEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEeCcHH-HhCCCCCCCCCC-CCCCCCCChHHHHH
Confidence 9999986532 223456778899999999999998875 2 3566666421 1100 0001 01122334678888
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
....++...+++.++++...++...|+|...
T Consensus 142 ~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~ 172 (312)
T 3ko8_A 142 AAGEVMCATYARLFGVRCLAVRYANVVGPRL 172 (312)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeccccCcCC
Confidence 8888888888888899888888878899653
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=106.56 Aligned_cols=172 Identities=12% Similarity=-0.058 Sum_probs=105.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-c-CCCCcceEEeCChhhhcCC-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-A-FPLLKGVVATTDAVEACTG- 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~-~~~~~~v~~~~~~~~al~~- 81 (320)
.|||+||||+|++|++++..|++.|+ +|++++++...... ....++... . .....++....++.+++++
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 74 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGY-------EVYGADRRSGEFAS-WRLKELGIENDVKIIHMDLLEFSNIIRTIEKV 74 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECSCCSTTTT-HHHHHTTCTTTEEECCCCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEECCCccccc-ccHhhccccCceeEEECCCCCHHHHHHHHHhc
Confidence 46999999999999999999999887 89999987522111 111111100 0 0011222222234555665
Q ss_pred -CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEE
Q 020875 82 -VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNIT 154 (320)
Q Consensus 82 -aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~ 154 (320)
.|+|||+||..... ..+..+.+..|+..+.++++.+.+.+ ...++|++|+.. +... .+.+ ....++...|
T Consensus 75 ~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS~~-vyg~~~~~~~~e-~~~~~~~~~Y 151 (345)
T 2z1m_A 75 QPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVK-PDTKFYQASTSE-MFGKVQEIPQTE-KTPFYPRSPY 151 (345)
T ss_dssp CCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTCEEEEEEEGG-GGCSCSSSSBCT-TSCCCCCSHH
T ss_pred CCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEEechh-hcCCCCCCCCCc-cCCCCCCChh
Confidence 59999999875311 23456778899999999999999864 335677776432 1000 0001 0122333457
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
+.++....++...+++.++++....+.+.++|.
T Consensus 152 ~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp 184 (345)
T 2z1m_A 152 AVAKLFGHWITVNYREAYNMFACSGILFNHESP 184 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred HHHHHHHHHHHHHHHHHhCCceEeeeeeeecCC
Confidence 888888888878888888876554554555664
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.2e-11 Score=108.89 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=106.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~a 82 (320)
||||+||||+|++|++++..|++.|+ +|++++++.... . ..+.........++....++.++++ ++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~--~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 68 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGL-------SVVVVDNLQTGH--E---DAITEGAKFYNGDLRDKAFLRDVFTQENI 68 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCC--G---GGSCTTSEEEECCTTCHHHHHHHHHHSCE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-------EEEEEeCCCcCc--h---hhcCCCcEEEECCCCCHHHHHHHHhhcCC
Confidence 46999999999999999999999886 899998754211 1 0111000000112222223456666 89
Q ss_pred cEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEe
Q 020875 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL 156 (320)
Q Consensus 83 DvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~ 156 (320)
|+|||+|+..... ..+..+.+..|+..+.++++.+++.+ . .++|++|+. .+... .+.+ .....+...++.
T Consensus 69 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~~v~~Ss~-~~~~~~~~~~~~E-~~~~~~~~~Y~~ 144 (330)
T 2c20_A 69 EAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK-V-DKFIFSSTA-ATYGEVDVDLITE-ETMTNPTNTYGE 144 (330)
T ss_dssp EEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEECCG-GGGCSCSSSSBCT-TSCCCCSSHHHH
T ss_pred CEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcC-C-CEEEEeCCc-eeeCCCCCCCCCc-CCCCCCCChHHH
Confidence 9999999865311 12345678899999999999998864 2 356666653 22100 0000 001122335777
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
++....++...+++.++++..-++...|+|.+
T Consensus 145 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~ 176 (330)
T 2c20_A 145 TKLAIEKMLHWYSQASNLRYKIFRYFNVAGAT 176 (330)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEECSEEECCC
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCcccCCC
Confidence 88888788777888888888888877788864
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.3e-10 Score=104.89 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=107.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC-cCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--- 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--- 80 (320)
.|+|+||||+|++|++++..|+..| + +|++++++....... .+... ....++.....+.++++
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~~-------~V~~~~r~~~~~~~~----~~~~~--~~~~d~~~~~~~~~~~~~~~ 112 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGIT-------DILVVDNLKDGTKFV----NLVDL--NIADYMDKEDFLIQIMAGEE 112 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCC-------CEEEEECCSSGGGGG----GTTTS--CCSEEEEHHHHHHHHHTTCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCc-------EEEEEecCCCcchhh----cccCc--eEeeecCcHHHHHHHHhhcc
Confidence 4789999999999999999999988 5 788898864321111 11111 11223333333445565
Q ss_pred --CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEE
Q 020875 81 --GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNIT 154 (320)
Q Consensus 81 --~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~ 154 (320)
++|+|||+|+.......+..+.+..|+..+.++++.+.+.+ . ++|++|... +... .+.+. ....+...|
T Consensus 113 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~-~--r~V~~SS~~-v~g~~~~~~~~E~-~~~~p~~~Y 187 (357)
T 2x6t_A 113 FGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-I--PFLYASSAA-TYGGRTSDFIESR-EYEKPLNVF 187 (357)
T ss_dssp CSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT-C--CEEEEEEGG-GGCSCSSCCCSSG-GGCCCSSHH
T ss_pred cCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcchH-HhCCCCCCCcCCc-CCCCCCChh
Confidence 59999999987543334567788999999999999999875 3 667766432 1100 00000 001122357
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
+.++....++...+++..+++...++...|+|..
T Consensus 188 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~ 221 (357)
T 2x6t_A 188 GYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPR 221 (357)
T ss_dssp HHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCC
Confidence 7788877788777888888888888877788864
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.4e-10 Score=101.63 Aligned_cols=173 Identities=13% Similarity=0.047 Sum_probs=101.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEec-CCcc-chhHHHHHHHhc---ccCCCCcceEEeCChhhhcC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI-PPAA-EALNGVKMELVD---AAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~-~~~~-~~~~~~~~dl~~---~~~~~~~~v~~~~~~~~al~ 80 (320)
+||+||||+||+|++++..|+++|+ +|+++++ +.+. ++.... .++.. .......++....++.++++
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 73 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGY-------SVNTTIRADPERKRDVSFL-TNLPGASEKLHFFNADLSNPDSFAAAIE 73 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEECCCC----CCCHHH-HTSTTHHHHEEECCCCTTCGGGGHHHHT
T ss_pred CEEEEECChhHHHHHHHHHHHHCCC-------EEEEEEeCCccchhHHHHH-HhhhccCCceEEEecCCCCHHHHHHHHc
Confidence 5899999999999999999999887 7887776 4211 111100 11100 00011123333345677889
Q ss_pred CCcEEEEeCCCCCCCCCC-HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH-----HHHHHCCCC------
Q 020875 81 GVNIAVMVGGFPRKEGME-RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFAPSI------ 148 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~-r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~-----~~~~~~~~~------ 148 (320)
++|+|||+|+.......+ ..+++..|+..+.++++.+.+.. .-.++|++|........ .+.+ ...
T Consensus 74 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~-~~~~iV~~SS~~~~~~~~~~~~~~~e--~~~~~~~~~ 150 (322)
T 2p4h_X 74 GCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSK-TVKRFIYTSSGSAVSFNGKDKDVLDE--SDWSDVDLL 150 (322)
T ss_dssp TCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCS-SCCEEEEEEEGGGTSCSSSCCSEECT--TCCCCHHHH
T ss_pred CCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEeccHHHcccCCCCCeecCC--ccccchhhh
Confidence 999999999643111111 23478899999999999998862 12356666643211000 0000 000
Q ss_pred ---CCCc-EEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 149 ---PAKN-ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 149 ---~~~~-i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.+.. .|+.++....++...+++..|++..-++...|+|...
T Consensus 151 ~~~~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~ 195 (322)
T 2p4h_X 151 RSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFV 195 (322)
T ss_dssp HHHCCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCC
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCC
Confidence 0111 3566666666666667777788888888878888643
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-10 Score=107.25 Aligned_cols=176 Identities=12% Similarity=0.147 Sum_probs=105.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccch--------------hHHHHH---HHhcccC-CC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA--------------LNGVKM---ELVDAAF-PL 65 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~--------------~~~~~~---dl~~~~~-~~ 65 (320)
++++|+||||+||||++++..|+++|+ +|+++|+...... +..... ++..... ..
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ 82 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKNY-------EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELY 82 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEE
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCCC-------eEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEE
Confidence 468999999999999999999999887 8999987521100 000000 1111110 01
Q ss_pred CcceEEeCChhhhcCC--CcEEEEeCCCCCCC--CCCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH
Q 020875 66 LKGVVATTDAVEACTG--VNIAVMVGGFPRKE--GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 66 ~~~v~~~~~~~~al~~--aDvVi~~ag~~~~~--~~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~ 138 (320)
..++....++.+++++ +|+|||+||..... ..+. ...+..|+..+.++++.+.+.+ ...++|++|+. .+..
T Consensus 83 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~~~~~V~~SS~-~vyg 160 (404)
T 1i24_A 83 VGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG-EECHLVKLGTM-GEYG 160 (404)
T ss_dssp ESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEECCG-GGGC
T ss_pred ECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhC-CCcEEEEeCcH-HHhC
Confidence 1222222234556666 99999999864311 1122 2367889999999999999875 32367777753 2210
Q ss_pred HHHHHHC----------------CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 139 LILKEFA----------------PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 139 ~~~~~~~----------------~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
..-.... ...++...|+.++....++...+++.+|++...++...|+|..
T Consensus 161 ~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~ 226 (404)
T 1i24_A 161 TPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVK 226 (404)
T ss_dssp CCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSC
T ss_pred CCCCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCC
Confidence 0000000 0111223467777777777777778889988888888888964
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-10 Score=107.19 Aligned_cols=173 Identities=17% Similarity=0.104 Sum_probs=106.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHH-hcCcCCCCCCeEEEEEecCCccch-------hHHHHHHHhcccC-----------CC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIA-RGVMLGTDQPVILHMLDIPPAAEA-------LNGVKMELVDAAF-----------PL 65 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~-~~~~~~~~~~~ev~l~D~~~~~~~-------~~~~~~dl~~~~~-----------~~ 65 (320)
.|+|+||||+|++|++++..|+ +.|+ +|++++++..... .......+..... ..
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNH-------SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALE 74 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCC-------EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCC-------EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEE
Confidence 3699999999999999999999 8886 8999987642110 1111100111100 00
Q ss_pred CcceEEeCChhhhcC--C-CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH-
Q 020875 66 LKGVVATTDAVEACT--G-VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL- 139 (320)
Q Consensus 66 ~~~v~~~~~~~~al~--~-aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~- 139 (320)
..++....++.++++ + +|+|||+|+..... ..+..+.+..|+..+.++++.+++.+ . .++|++|+ ..+...
T Consensus 75 ~~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~-~-~~iv~~SS-~~v~g~~ 151 (397)
T 1gy8_A 75 VGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK-C-DKIIFSSS-AAIFGNP 151 (397)
T ss_dssp ESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEEEE-GGGTBSC
T ss_pred ECCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhC-C-CEEEEECC-HHHhCCC
Confidence 112222223445565 6 99999999865311 12355678899999999999998864 2 35666664 222100
Q ss_pred ----------HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 140 ----------ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 140 ----------~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
.+.+. ....+...|+.++....++...+++.++++...++...|+|.+
T Consensus 152 ~~~~~~~~~~~~~E~-~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~ 209 (397)
T 1gy8_A 152 TMGSVSTNAEPIDIN-AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH 209 (397)
T ss_dssp CC-----CCCCBCTT-SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred CcccccccccCcCcc-CCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCC
Confidence 00000 0011223577788888888888888889988888887788875
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-10 Score=104.30 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=105.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~a 82 (320)
+|||+||||+|++|++++..|+..|+ +|++++++. ..|+.+.. ++.++++ ++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~v~~~~r~~--------~~D~~d~~-----------~~~~~~~~~~~ 56 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGD-------VELVLRTRD--------ELNLLDSR-----------AVHDFFASERI 56 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-------EEEECCCTT--------TCCTTCHH-----------HHHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-------eEEEEecCc--------cCCccCHH-----------HHHHHHHhcCC
Confidence 47999999999999999999999886 788777642 13554432 4556677 89
Q ss_pred cEEEEeCCCCCC---CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCC---CCCCC-
Q 020875 83 NIAVMVGGFPRK---EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAP---SIPAK- 151 (320)
Q Consensus 83 DvVi~~ag~~~~---~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~---~~~~~- 151 (320)
|+|||+|+.... ...+..+.+..|+..+.++++.+.+.+ . .++|++|+.. +... .+.+... ...+.
T Consensus 57 d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~SS~~-vyg~~~~~~~~E~~~~~~~~~p~~ 133 (321)
T 1e6u_A 57 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-V-NKLLFLGSSC-IYPKLAKQPMAESELLQGTLEPTN 133 (321)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEECCGG-GSCTTCCSSBCGGGTTSSCCCGGG
T ss_pred CEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhC-C-CeEEEEccHH-HcCCCCCCCcCccccccCCCCCCC
Confidence 999999986531 112455678899999999999998864 2 3677776532 1100 0000000 01111
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
..|+.++....++...+++..+++..-++...|+|...
T Consensus 134 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~ 171 (321)
T 1e6u_A 134 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHD 171 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTC
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCC
Confidence 25677777777777777777899888888888899644
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-10 Score=105.80 Aligned_cols=174 Identities=11% Similarity=0.106 Sum_probs=108.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cC-CCCcceEEeCChhhhcC--
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF-PLLKGVVATTDAVEACT-- 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~al~-- 80 (320)
|||+||||+|++|++++..|++. |+ +|+++|++......... .++... .. ....++....++.++++
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~-------~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 72 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQD-------TVVNIDKLTYAGNLESL-SDISESNRYNFEHADICDSAEITRIFEQY 72 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC-------EEEEEECCCTTCCGGGG-TTTTTCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCC-------eEEEEecCCCCCchhhh-hhhhcCCCeEEEECCCCCHHHHHHHHhhc
Confidence 58999999999999999999987 55 89999875311111110 111110 00 00112222223455666
Q ss_pred CCcEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhh--cCC-----CeEEEEEcCcchhhHH------------
Q 020875 81 GVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQH--AAP-----NCKVLVVANPANTNAL------------ 139 (320)
Q Consensus 81 ~aDvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~--~~~-----~~~viv~snP~~~~~~------------ 139 (320)
++|+|||+|+.... ...+..+++..|+..+.++++.+.+. +.+ .+++|++|+.. +...
T Consensus 73 ~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~-v~g~~~~~~~~~~~~~ 151 (361)
T 1kew_A 73 QPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE-VYGDLPHPDEVENSVT 151 (361)
T ss_dssp CCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG-GGCCCCCGGGSCTTSC
T ss_pred CCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHH-HhCCCccccccccccc
Confidence 89999999986531 01234567889999999999999887 411 13677776421 1000
Q ss_pred --HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 140 --ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 140 --~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.+.+. ...++...|+.++....++...+++.++++...++...|+|...
T Consensus 152 ~~~~~E~-~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~ 202 (361)
T 1kew_A 152 LPLFTET-TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYH 202 (361)
T ss_dssp CCCBCTT-SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred CCCCCCC-CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCC
Confidence 00110 11223345788888888888888888899888888878888653
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-10 Score=103.82 Aligned_cols=172 Identities=14% Similarity=0.080 Sum_probs=107.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc---C---cCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C-CCCcceEEeCChhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG---V---MLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-PLLKGVVATTDAVE 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~---~---~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~-~~~~~v~~~~~~~~ 77 (320)
|||+||||+|++|++++..|+++ | + +|++++++....... ...++.... . ....++....++.+
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~-------~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD-------EVIVLDSLTYAGNRA-NLAPVDADPRLRFVHGDIRDAGLLAR 72 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS-------EEEEEECCCTTCCGG-GGGGGTTCTTEEEEECCTTCHHHHHH
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCce-------EEEEEECCCccCchh-hhhhcccCCCeEEEEcCCCCHHHHHH
Confidence 58999999999999999999985 5 5 899998753111111 001111000 0 00112222224556
Q ss_pred hcCCCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCC
Q 020875 78 ACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAK 151 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~ 151 (320)
++.++|+|||+|+..... ..+..+.+..|+..+.++++.+.+.+ . .++|++|+.. +... .+.+ ....++.
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~-~-~~~v~~SS~~-vyg~~~~~~~~E-~~~~~~~ 148 (337)
T 1r6d_A 73 ELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-V-GRVVHVSTNQ-VYGSIDSGSWTE-SSPLEPN 148 (337)
T ss_dssp HTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT-C-CEEEEEEEGG-GGCCCSSSCBCT-TSCCCCC
T ss_pred HhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEecchH-HhCCCCCCCCCC-CCCCCCC
Confidence 778999999999864311 12345678899999999999999875 2 3666666431 1000 0001 0112233
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
..|+.++....++...+++.++++..-++...|+|...
T Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~ 186 (337)
T 1r6d_A 149 SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQ 186 (337)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTC
T ss_pred CchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCC
Confidence 45777888887887778888899888888777888643
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-10 Score=97.58 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=72.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+||||+|++|++++..|+++|+ +|+++++++ +++. ++.........++....+ +++.++|+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~--~~~~----~~~~~~~~~~~D~~d~~~--~~~~~~d~v 65 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH-------EVTAIVRNA--GKIT----QTHKDINILQKDIFDLTL--SDLSDQNVV 65 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCS--HHHH----HHCSSSEEEECCGGGCCH--HHHTTCSEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC-------EEEEEEcCc--hhhh----hccCCCeEEeccccChhh--hhhcCCCEE
Confidence 6899999999999999999999986 899999874 2222 111110001112221112 788999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
|++||.+... ...|+..++++++.+++.+ ..++|++|+.
T Consensus 66 i~~ag~~~~~-------~~~~~~~~~~l~~a~~~~~--~~~~v~~SS~ 104 (221)
T 3ew7_A 66 VDAYGISPDE-------AEKHVTSLDHLISVLNGTV--SPRLLVVGGA 104 (221)
T ss_dssp EECCCSSTTT-------TTSHHHHHHHHHHHHCSCC--SSEEEEECCC
T ss_pred EECCcCCccc-------cchHHHHHHHHHHHHHhcC--CceEEEEecc
Confidence 9999875321 2458889999999999874 3567777754
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-10 Score=105.26 Aligned_cols=171 Identities=10% Similarity=0.029 Sum_probs=103.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC-------cCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CCCCcceEEeCCh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGV-------MLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FPLLKGVVATTDA 75 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~-------~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~ 75 (320)
++|+|+||||+|++|++++..|++.| + +|+++|++... ... ..... .....++....++
T Consensus 13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~-------~V~~~~r~~~~--~~~----~~~~~~~~~~~Dl~d~~~~ 79 (342)
T 2hrz_A 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE-------KFTLIDVFQPE--APA----GFSGAVDARAADLSAPGEA 79 (342)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE-------EEEEEESSCCC--CCT----TCCSEEEEEECCTTSTTHH
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc-------eEEEEEccCCc--ccc----ccCCceeEEEcCCCCHHHH
Confidence 45799999999999999999999888 4 79999986421 110 00000 0001122222244
Q ss_pred hhhc-CCCcEEEEeCCCCCC-CCCCHHHHHHhhHHHHHHHHHHHhhhcC---CCeEEEEEcCcchhhHH----HHHHHCC
Q 020875 76 VEAC-TGVNIAVMVGGFPRK-EGMERKDVMSKNVSIYKAQASALEQHAA---PNCKVLVVANPANTNAL----ILKEFAP 146 (320)
Q Consensus 76 ~~al-~~aDvVi~~ag~~~~-~~~~r~~~~~~n~~~~~~i~~~i~~~~~---~~~~viv~snP~~~~~~----~~~~~~~ 146 (320)
.+++ .++|+|||+|+.... ...+..+.+..|+..+.++++.+.+... +..++|++|+.. +... .+.+. .
T Consensus 80 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~-~~~~~~~~~~~E~-~ 157 (342)
T 2hrz_A 80 EKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIA-VFGAPLPYPIPDE-F 157 (342)
T ss_dssp HHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGG-GCCSSCCSSBCTT-C
T ss_pred HHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchH-hhCCCCCCCcCCC-C
Confidence 5566 489999999986531 0123456788999999999999988640 124666666432 1000 00000 0
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
...+...|+.++....++...+++..+++...++...|+|..|
T Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg 200 (342)
T 2hrz_A 158 HTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPG 200 (342)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCS
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCC
Confidence 0112335777777777777777777777766677666667444
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-09 Score=93.19 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~al~~ 81 (320)
+.|||+||||+|++|++++..|+++|+ +|+++++++ +++.. +.+... ....++. .++.+++.+
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-------~V~~~~R~~--~~~~~----~~~~~~~~~~~~Dl~--~~~~~~~~~ 84 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH-------EPVAMVRNE--EQGPE----LRERGASDIVVANLE--EDFSHAFAS 84 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSG--GGHHH----HHHTTCSEEEECCTT--SCCGGGGTT
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC-------eEEEEECCh--HHHHH----HHhCCCceEEEcccH--HHHHHHHcC
Confidence 458999999999999999999999987 899999874 33321 111111 1112222 467788999
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+|+||++||... ..+..+.+..|+....++++.+++.+ . .++|++|.
T Consensus 85 ~D~vi~~ag~~~--~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~iv~~SS 131 (236)
T 3e8x_A 85 IDAVVFAAGSGP--HTGADKTILIDLWGAIKTIQEAEKRG-I-KRFIMVSS 131 (236)
T ss_dssp CSEEEECCCCCT--TSCHHHHHHTTTHHHHHHHHHHHHHT-C-CEEEEECC
T ss_pred CCEEEECCCCCC--CCCccccchhhHHHHHHHHHHHHHcC-C-CEEEEEec
Confidence 999999999754 24566788899999999999998875 3 46777775
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=98.52 Aligned_cols=164 Identities=17% Similarity=0.162 Sum_probs=107.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-cCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC----
Q 020875 7 RVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG---- 81 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~---- 81 (320)
||+||||+|++|++++..|++.| + +|++++++....... ++.... ...++.....+.+++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~-------~V~~~~r~~~~~~~~----~~~~~~--~~~d~~~~~~~~~~~~~~~~~ 67 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGIT-------DILVVDNLKDGTKFV----NLVDLN--IADYMDKEDFLIQIMAGEEFG 67 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCC-------CEEEEECCSSGGGGH----HHHTSC--CSEEEEHHHHHHHHHTTCCCS
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCc-------EEEEEccCCCCchhh----hcCcce--eccccccHHHHHHHHhccccC
Confidence 58999999999999999999988 5 788888864321111 121111 22233333345556664
Q ss_pred -CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH----HHHHCCCCCCCcEEEe
Q 020875 82 -VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPAKNITCL 156 (320)
Q Consensus 82 -aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~----~~~~~~~~~~~~i~~~ 156 (320)
+|+|||+|+.......+..+.+..|+..+.++++.+++.+ . ++|++|... +.... +.+. ....+...++.
T Consensus 68 ~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~--~~v~~SS~~-v~g~~~~~~~~E~-~~~~p~~~Y~~ 142 (310)
T 1eq2_A 68 DVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE-I--PFLYASSAA-TYGGRTSDFIESR-EYEKPLNVYGY 142 (310)
T ss_dssp SCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT-C--CEEEEEEGG-GGTTCCSCBCSSG-GGCCCSSHHHH
T ss_pred CCcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEeeHH-HhCCCCCCCCCCC-CCCCCCChhHH
Confidence 9999999987543334567788999999999999999875 3 677776432 11000 0000 00112234677
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
++....++...+++..+++...++...|+|..
T Consensus 143 sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~ 174 (310)
T 1eq2_A 143 SKFLFDEYVRQILPEANSQIVGFRYFNVYGPR 174 (310)
T ss_dssp HHHHHHHHHHHHGGGCSSCEEEEEECEEESSS
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCCcEECcC
Confidence 77777777777777788888888877778864
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-10 Score=105.49 Aligned_cols=172 Identities=13% Similarity=0.042 Sum_probs=106.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cC-CCCcceEEeCChhhhcCC-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF-PLLKGVVATTDAVEACTG- 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~~~~al~~- 81 (320)
.|+|+||||+|++|++++..|+..|+ +|++++++... .......+... .. ....++....++.+++++
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 79 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGA-------TVKGYSLTAPT--VPSLFETARVADGMQSEIGDIRDQNKLLESIREF 79 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCSS--SSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-------eEEEEeCCCcc--cchhhHhhccCCceEEEEccccCHHHHHHHHHhc
Confidence 47999999999999999999999887 89999986421 11111111100 00 001122222234455665
Q ss_pred -CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH-----HHHHHCCCCCCCcE
Q 020875 82 -VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFAPSIPAKNI 153 (320)
Q Consensus 82 -aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~-----~~~~~~~~~~~~~i 153 (320)
+|+|||+|+.+... ..+..+.+..|+..+.++++.+.+.+ ...++|++|+.. +... .+.+ ....++...
T Consensus 80 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~SS~~-vyg~~~~~~~~~E-~~~~~~~~~ 156 (357)
T 1rkx_A 80 QPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG-GVKAVVNITSDK-CYDNKEWIWGYRE-NEAMGGYDP 156 (357)
T ss_dssp CCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHC-CCCEEEEECCGG-GBCCCCSSSCBCT-TSCBCCSSH
T ss_pred CCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEecCHH-HhCCCCcCCCCCC-CCCCCCCCc
Confidence 89999999864311 12345678899999999999998874 234677776532 1000 0001 011223335
Q ss_pred EEeehhhHHHHHHHHHHHc---------CCCCCCeeeeEEEcCC
Q 020875 154 TCLTRLDHNRALGQISEKL---------NVQVSDVKNVIIWGNH 188 (320)
Q Consensus 154 ~~~t~ld~~r~~~~~a~~l---------~v~~~~v~~~~v~G~h 188 (320)
|+.++....++...+++.+ +++...++...|+|..
T Consensus 157 Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~ 200 (357)
T 1rkx_A 157 YSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGG 200 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTT
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCC
Confidence 7777777778777777765 8877778877778854
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=99.61 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=81.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC--Cc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG--VN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~--aD 83 (320)
|||+||||+|++|++++..|+++|+ +|++++++..... ....|+.+. .++.+++++ +|
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~--~~~~Dl~d~-----------~~~~~~~~~~~~d 62 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNW-------HAVGCGFRRARPK--FEQVNLLDS-----------NAVHHIIHDFQPH 62 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEC-------------------------------CHHHHHHHCCS
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCC-------eEEEEccCCCCCC--eEEecCCCH-----------HHHHHHHHhhCCC
Confidence 6899999999999999999999886 8999997532110 122344333 355666764 89
Q ss_pred EEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH---HHHHHCCCCCCCcEEEeeh
Q 020875 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEFAPSIPAKNITCLTR 158 (320)
Q Consensus 84 vVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~---~~~~~~~~~~~~~i~~~t~ 158 (320)
+|||+|+..... ..+..+.+..|+..+.++++.+.+.+ +++|++|+.. +... .+.+. ...++...++.++
T Consensus 63 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~~-v~~~~~~~~~E~-~~~~~~~~Y~~sK 137 (315)
T 2ydy_A 63 VIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG---AFLIYISSDY-VFDGTNPPYREE-DIPAPLNLYGKTK 137 (315)
T ss_dssp EEEECC-------------------CHHHHHHHHHHHHHT---CEEEEEEEGG-GSCSSSCSBCTT-SCCCCCSHHHHHH
T ss_pred EEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEchHH-HcCCCCCCCCCC-CCCCCcCHHHHHH
Confidence 999999864321 23345678899999999999999874 4677776432 1000 00000 0012222355555
Q ss_pred hhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 159 ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
....++ .+.++.+...+|...|+|...
T Consensus 138 ~~~e~~----~~~~~~~~~~lR~~~v~G~~~ 164 (315)
T 2ydy_A 138 LDGEKA----VLENNLGAAVLRIPILYGEVE 164 (315)
T ss_dssp HHHHHH----HHHHCTTCEEEEECSEECSCS
T ss_pred HHHHHH----HHHhCCCeEEEeeeeeeCCCC
Confidence 544443 334456666677776787543
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-09 Score=98.51 Aligned_cols=167 Identities=11% Similarity=0.018 Sum_probs=104.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEe-CC-hhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT-TD-AVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~-~~-~~~al~~ 81 (320)
+++||+||||+|++|++++..|++.|+ +|++++++.... .. ...++.. ...+... .| ...++.+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~-~~-~~~~~~~-----~~~~~~~~~D~~~~~~~~ 91 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGH-------EVTVVDNFFTGR-KR-NVEHWIG-----HENFELINHDVVEPLYIE 91 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCC-GG-GTGGGTT-----CTTEEEEECCTTSCCCCC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCC-------EEEEEeCCCccc-hh-hhhhhcc-----CCceEEEeCccCChhhcC
Confidence 468999999999999999999999886 899999853211 11 0011110 0112111 12 2345778
Q ss_pred CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHC----CCCCCC
Q 020875 82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFA----PSIPAK 151 (320)
Q Consensus 82 aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~----~~~~~~ 151 (320)
+|+|||+|+..... ..+..+.+..|+..+.++++.+.+.+ +++|++|.. .+... .+.+.. ...++.
T Consensus 92 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~-~v~g~~~~~~~~E~~~~~~~~~~~~ 167 (343)
T 2b69_A 92 VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG---ARLLLASTS-EVYGDPEVHPQSEDYWGHVNPIGPR 167 (343)
T ss_dssp CSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT---CEEEEEEEG-GGGBSCSSSSBCTTCCCBCCSSSTT
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC---CcEEEECcH-HHhCCCCCCCCcccccccCCCCCCC
Confidence 99999999865321 23455678899999999999999875 367776642 21100 000000 011122
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
..|+.++....++...+++..+++..-++...|+|..
T Consensus 168 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~ 204 (343)
T 2b69_A 168 ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 204 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred CchHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcC
Confidence 3467777777787777788889888888876778864
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-10 Score=106.50 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=100.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+||||+|++|++++..|+++|.. +|+.+|++.+ .. ++.++++++|+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~------~v~~~d~~~d-------------~~-----------~l~~~~~~~d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDH------HIFEVHRQTK-------------EE-----------ELESALLKADFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC------EEEECCTTCC-------------HH-----------HHHHHHHHCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC------EEEEECCCCC-------------HH-----------HHHHHhccCCEE
Confidence 68999999999999999999998863 7888887311 11 244556689999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHH
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAL 165 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~ 165 (320)
||+|+.... .+..+....|+...+++++.+++.+ ...++|.+|... + + + ...++.++....++.
T Consensus 51 ih~a~~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~Ss~~-~-------~----~-~~~Y~~sK~~~E~~~ 114 (369)
T 3st7_A 51 VHLAGVNRP--EHDKEFSLGNVSYLDHVLDILTRNT-KKPAILLSSSIQ-A-------T----Q-DNPYGESKLQGEQLL 114 (369)
T ss_dssp EECCCSBCT--TCSTTCSSSCCBHHHHHHHHHTTCS-SCCEEEEEEEGG-G-------G----S-CSHHHHHHHHHHHHH
T ss_pred EECCcCCCC--CCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeCchh-h-------c----C-CCCchHHHHHHHHHH
Confidence 999987542 2334456778999999999999876 334666666432 1 0 1 224566667777777
Q ss_pred HHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 166 GQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 166 ~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
..+++..+++..-+|...|+|..+
T Consensus 115 ~~~~~~~g~~~~i~R~~~v~G~~~ 138 (369)
T 3st7_A 115 REYAEEYGNTVYIYRWPNLFGKWC 138 (369)
T ss_dssp HHHHHHHCCCEEEEEECEEECTTC
T ss_pred HHHHHHhCCCEEEEECCceeCCCC
Confidence 778888899888888888888654
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-10 Score=103.00 Aligned_cols=164 Identities=10% Similarity=0.044 Sum_probs=105.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc--CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--G 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~--~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~ 81 (320)
|||+||||+|++|++++..|++. |+ +|++++++.... . +.........++....++.++++ +
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~~~--~-----~~~~~~~~~~D~~d~~~~~~~~~~~~ 68 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTE-------NVIASDIRKLNT--D-----VVNSGPFEVVNALDFNQIEHLVEVHK 68 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGG-------GEEEEESCCCSC--H-----HHHSSCEEECCTTCHHHHHHHHHHTT
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCC-------EEEEEcCCCccc--c-----ccCCCceEEecCCCHHHHHHHHhhcC
Confidence 68999999999999999999987 76 788898864321 1 10000001112222224556676 8
Q ss_pred CcEEEEeCCCCCCC-CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH-----HHHHHCCCCCCCcEEE
Q 020875 82 VNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFAPSIPAKNITC 155 (320)
Q Consensus 82 aDvVi~~ag~~~~~-~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~-----~~~~~~~~~~~~~i~~ 155 (320)
+|+|||+|+..... ..+..+.+..|+..+.++++.+++.+ . .++|++|... +... ...+ .....+...++
T Consensus 69 ~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~SS~~-~~~~~~~~~~~~e-~~~~~~~~~Y~ 144 (312)
T 2yy7_A 69 ITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKK-I-KKIFWPSSIA-VFGPTTPKENTPQ-YTIMEPSTVYG 144 (312)
T ss_dssp CCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTS-C-SEEECCEEGG-GCCTTSCSSSBCS-SCBCCCCSHHH
T ss_pred CCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEeccHH-HhCCCCCCCCccc-cCcCCCCchhH
Confidence 99999999864311 12455678899999999999998864 2 2566665432 1100 0000 00011233577
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
.++....++...+++..+++...++...|+|.
T Consensus 145 ~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~ 176 (312)
T 2yy7_A 145 ISKQAGERWCEYYHNIYGVDVRSIRYPGLISW 176 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEECEEECEEECS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCeEecC
Confidence 78887778877788888998888987778894
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.2e-09 Score=94.42 Aligned_cols=101 Identities=21% Similarity=0.252 Sum_probs=71.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+||||+||||++++..|+++|+ +|+.+.+++....... |- ...++++++|.|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~-------~V~~l~R~~~~~~~~~---~~---------------~~~~~l~~~d~v 55 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH-------EVTLVSRKPGPGRITW---DE---------------LAASGLPSCDAA 55 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCTTEEEH---HH---------------HHHHCCCSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCCcCeeec---ch---------------hhHhhccCCCEE
Confidence 7999999999999999999999998 8988887643221111 10 124568899999
Q ss_pred EEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 86 VMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 86 i~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
||+|+.+-... ....++...|+..++.+++.+++...+..++|..|
T Consensus 56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~S 107 (298)
T 4b4o_A 56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVT 107 (298)
T ss_dssp EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence 99987532111 12345778899999999999988763333344443
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-10 Score=104.29 Aligned_cols=168 Identities=13% Similarity=0.028 Sum_probs=105.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~aD 83 (320)
|||+||||+|++|++++..|++.|+ +|+++|+... .... .+.........++....++.++++ ++|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~r~~~-~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 68 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGL-------EVAVLDNLAT-GKRE----NVPKGVPFFRVDLRDKEGVERAFREFRPT 68 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-------EEEEECCCSS-CCGG----GSCTTCCEECCCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-------EEEEEECCCc-Cchh----hcccCeEEEECCCCCHHHHHHHHHhcCCC
Confidence 5899999999999999999999887 8999987431 1111 010000001122222223456666 899
Q ss_pred EEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH-----HHHHHCCCCCCCcEEEe
Q 020875 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL-----ILKEFAPSIPAKNITCL 156 (320)
Q Consensus 84 vVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~-----~~~~~~~~~~~~~i~~~ 156 (320)
+|||+|+..... ..+....+..|+..+.++++.+++.+ . .++|++|+...+... ...+. ...++...|+.
T Consensus 69 ~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~-~~iv~~SS~~~~~g~~~~~~~~~E~-~~~~~~~~Y~~ 145 (311)
T 2p5y_A 69 HVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYG-V-EKLVFASTGGAIYGEVPEGERAEET-WPPRPKSPYAA 145 (311)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-C-SEEEEEEEHHHHHCCCCTTCCBCTT-SCCCCCSHHHH
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-C-CEEEEeCCChhhcCCCCCCCCcCCC-CCCCCCChHHH
Confidence 999999864311 12345678899999999999998764 2 366766643111000 00000 00112335778
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
++....++...+++..+++...++...|+|..
T Consensus 146 sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~ 177 (311)
T 2p5y_A 146 SKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPR 177 (311)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeccccCcC
Confidence 88888888777888889988888877788864
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=98.96 E-value=4.4e-10 Score=103.14 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=104.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEe-CChhhhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVAT-TDAVEACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~-~~~~~al~~a 82 (320)
|||+||||+|++|++++..|++. |+ +|++++++.. ++... +.+... ....++... ..+.++++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~-------~V~~~~r~~~--~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~ 68 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY-------EVYGLDIGSD--AISRF---LNHPHFHFVEGDISIHSEWIEYHVKKC 68 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC-------EEEEEESCCG--GGGGG---TTCTTEEEEECCTTTCSHHHHHHHHHC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC-------EEEEEeCCcc--hHHHh---hcCCCeEEEeccccCcHHHHHhhccCC
Confidence 58999999999999999999987 66 8999998642 22110 000000 001111111 1244567799
Q ss_pred cEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCC---CC---C
Q 020875 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPS---IP---A 150 (320)
Q Consensus 83 DvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~---~~---~ 150 (320)
|+|||+|+..... ..+..+.+..|+....++++.+++.+ .++|++|+.. +... .+.+..+. .| +
T Consensus 69 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~ 144 (345)
T 2bll_A 69 DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR---KRIIFPSTSE-VYGMCSDKYFDEDHSNLIVGPVNKP 144 (345)
T ss_dssp SEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT---CEEEEECCGG-GGBTCCCSSBCTTTCCCBCCCTTCG
T ss_pred CEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC---CeEEEEecHH-HcCCCCCCCcCCcccccccCcccCc
Confidence 9999999865311 12345677889999999999998864 4677777532 1100 00000000 01 1
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
...|+.++....++...+++..+++...++...|+|...
T Consensus 145 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~ 183 (345)
T 2bll_A 145 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL 183 (345)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSC
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCc
Confidence 124677777777887778888899888888777788653
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-10 Score=99.34 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=103.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC-
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG- 81 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~- 81 (320)
.++|||+||||+|++|++++..|++.|+.. ..+...+ .....|+.+.. .+.+++++
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~---~~~~~~~---------~~~~~D~~d~~-----------~~~~~~~~~ 60 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAGLP---GEDWVFV---------SSKDADLTDTA-----------QTRALFEKV 60 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTCCT---TCEEEEC---------CTTTCCTTSHH-----------HHHHHHHHS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCCcc---ccccccc---------CceecccCCHH-----------HHHHHHhhc
Confidence 357899999999999999999999987511 0122111 11223554433 45566665
Q ss_pred -CcEEEEeCCCCCC---CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHC---CCCCC
Q 020875 82 -VNIAVMVGGFPRK---EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFA---PSIPA 150 (320)
Q Consensus 82 -aDvVi~~ag~~~~---~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~---~~~~~ 150 (320)
+|+|||+|+.... ...+..+.+..|+..+.++++.+++.+ . .++|++|+.. +... .+.+.. ....+
T Consensus 61 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~-~-~~~v~~SS~~-vyg~~~~~~~~E~~~~~~~~~p 137 (319)
T 4b8w_A 61 QPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVG-A-RKVVSCLSTC-IFPDKTTYPIDETMIHNGPPHN 137 (319)
T ss_dssp CCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-C-SEEEEECCGG-GSCSSCCSSBCGGGGGBSCCCS
T ss_pred CCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcC-C-CeEEEEcchh-hcCCCCCCCccccccccCCCCC
Confidence 9999999987431 123456788999999999999999875 3 2566666432 1100 000000 01111
Q ss_pred Cc-EEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 151 KN-ITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 151 ~~-i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.. .++.++....++...+++..+++..-++...|+|...
T Consensus 138 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~ 177 (319)
T 4b8w_A 138 SNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHD 177 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCC
Confidence 22 3677788888887788888899888888888889643
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-10 Score=105.74 Aligned_cols=173 Identities=10% Similarity=-0.031 Sum_probs=102.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc---chhHHHHHHH---hcccC-CCCcceEEeCChhhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMEL---VDAAF-PLLKGVVATTDAVEA 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~---~~~~~~~~dl---~~~~~-~~~~~v~~~~~~~~a 78 (320)
++|+||||+|++|++++..|++.|+ +|++++++... +++.....++ ..... ....++....++.++
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 97 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGY-------EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKI 97 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHH
Confidence 6899999999999999999999886 89999986421 1111100000 00000 001122112234455
Q ss_pred cCC--CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCC-CeEEEEEcCcchhhHH----HHHHHCCCCC
Q 020875 79 CTG--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAP-NCKVLVVANPANTNAL----ILKEFAPSIP 149 (320)
Q Consensus 79 l~~--aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~-~~~viv~snP~~~~~~----~~~~~~~~~~ 149 (320)
+++ .|+|||+|+..... ..+..+.+..|+..+.++++.+.+.... ..++|++|+.. +... .+.+. ....
T Consensus 98 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~-~~~~~~~~~~~E~-~~~~ 175 (375)
T 1t2a_A 98 INEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSE-LYGKVQEIPQKET-TPFY 175 (375)
T ss_dssp HHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGG-GTCSCSSSSBCTT-SCCC
T ss_pred HHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchh-hhCCCCCCCCCcc-CCCC
Confidence 554 69999999865311 1234567889999999999999887521 14677776532 1000 00010 1112
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
+...|+.++....++...+++.++++...++.+.++|.
T Consensus 176 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp 213 (375)
T 1t2a_A 176 PRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESP 213 (375)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECT
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCC
Confidence 23357778887778877888888887665665555664
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.2e-10 Score=103.01 Aligned_cols=169 Identities=16% Similarity=0.153 Sum_probs=108.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~a 82 (320)
.++|+||||+|++|++++..|++. |.. +|+++++++ .+.......+.+... ....++....++.++++++
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~------~V~~~~r~~--~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 92 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVLDTTNAK------KIIVYSRDE--LKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGV 92 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCCCS------EEEEEESCH--HHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCCC------EEEEEECCh--hhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcC
Confidence 479999999999999999999988 752 799999863 223222222221110 1112333333466788999
Q ss_pred cEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhh
Q 020875 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160 (320)
Q Consensus 83 DvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld 160 (320)
|+|||+|+....+ .....+.+..|+..+.++++.+.+.+ . .++|++|.-. .+.+...++.++..
T Consensus 93 D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~-v-~~~V~~SS~~------------~~~p~~~Y~~sK~~ 158 (344)
T 2gn4_A 93 DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNA-I-SQVIALSTDK------------AANPINLYGATKLC 158 (344)
T ss_dssp SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-C-SEEEEECCGG------------GSSCCSHHHHHHHH
T ss_pred CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCC-C-CEEEEecCCc------------cCCCccHHHHHHHH
Confidence 9999999875421 12345788999999999999999875 2 3677776421 11223456666666
Q ss_pred HHHHHHHHHHH---cCCCCCCeeeeEEEcCCCCcccccc
Q 020875 161 HNRALGQISEK---LNVQVSDVKNVIIWGNHSSSQYPDV 196 (320)
Q Consensus 161 ~~r~~~~~a~~---l~v~~~~v~~~~v~G~hg~~~~~~~ 196 (320)
..++...+++. .|++...++...|+|..+ +.+|.|
T Consensus 159 ~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~-~~i~~~ 196 (344)
T 2gn4_A 159 SDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG-SVVPFF 196 (344)
T ss_dssp HHHHHHHGGGCCCSSCCEEEEECCCEETTCTT-SHHHHH
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEeccEECCCC-CHHHHH
Confidence 66666555553 345556666666777643 455554
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-09 Score=101.52 Aligned_cols=172 Identities=9% Similarity=-0.015 Sum_probs=101.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc------cc-CCCCcceEEeCChhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD------AA-FPLLKGVVATTDAVE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~------~~-~~~~~~v~~~~~~~~ 77 (320)
+++|+||||+|++|++++..|++.|+ +|++++++....... ...++.. .. .....++....++.+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGY-------EVHGIKRRASSFNTE-RVDHIYQDPHTCNPKFHLHYGDLSDTSNLTR 72 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECC----------------------CCEEECCCCSSCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEECCCcccchH-HHHHHhhccccCCCceEEEECCCCCHHHHHH
Confidence 46899999999999999999999886 899999864210000 0011110 00 011123322223445
Q ss_pred hcCC--CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCC--CeEEEEEcCcchhhHH----HHHHHCCC
Q 020875 78 ACTG--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAP--NCKVLVVANPANTNAL----ILKEFAPS 147 (320)
Q Consensus 78 al~~--aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~--~~~viv~snP~~~~~~----~~~~~~~~ 147 (320)
++++ .|+|||+||..... ..+....+..|+..+.++++.+.+.. . ..++|++|+.. +... .+.+ ...
T Consensus 73 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~~iv~~SS~~-v~g~~~~~~~~E-~~~ 149 (372)
T 1db3_A 73 ILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG-LEKKTRFYQASTSE-LYGLVQEIPQKE-TTP 149 (372)
T ss_dssp HHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTT-CTTTCEEEEEEEGG-GGTTCCSSSBCT-TSC
T ss_pred HHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCChh-hhCCCCCCCCCc-cCC
Confidence 5654 69999999875321 23455677899999999999998875 2 14677776532 1100 0001 011
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
.++...|+.++....++...+++.++++...++.+.++|.
T Consensus 150 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp 189 (372)
T 1db3_A 150 FYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESP 189 (372)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCC
Confidence 2223357778888888888888888887655554445554
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.6e-10 Score=96.24 Aligned_cols=105 Identities=10% Similarity=0.143 Sum_probs=73.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEE-eCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-TTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~-~~~~~~al~~aDv 84 (320)
|||+||||+|++|++++..|++.|+ +|+++++++. ++... ... .....++.. ..++.++++++|+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~--~~~~~----~~~-~~~~~D~~d~~~~~~~~~~~~d~ 66 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY-------QIYAGARKVE--QVPQY----NNV-KAVHFDVDWTPEEMAKQLHGMDA 66 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC-------EEEEEESSGG--GSCCC----TTE-EEEECCTTSCHHHHHTTTTTCSE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCcc--chhhc----CCc-eEEEecccCCHHHHHHHHcCCCE
Confidence 5899999999999999999999886 8999998742 22110 000 000112222 2356778899999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
||++||.... +.+..|+....++++.+++.+ . .++|++|.
T Consensus 67 vi~~ag~~~~------~~~~~n~~~~~~l~~a~~~~~-~-~~iv~~SS 106 (219)
T 3dqp_A 67 IINVSGSGGK------SLLKVDLYGAVKLMQAAEKAE-V-KRFILLST 106 (219)
T ss_dssp EEECCCCTTS------SCCCCCCHHHHHHHHHHHHTT-C-CEEEEECC
T ss_pred EEECCcCCCC------CcEeEeHHHHHHHHHHHHHhC-C-CEEEEECc
Confidence 9999987642 145678888999999998875 2 36777775
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-09 Score=96.37 Aligned_cols=167 Identities=14% Similarity=0.036 Sum_probs=102.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+++||+||||+|++|++++..|++.|+ +|++++++.... ......+.+... ...+. -...++.++|
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~--~~~~~~~~~~~~--~~~~~---~~~~Dl~~~d 71 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGE-------EVTVLDDLRVPP--MIPPEGTGKFLE--KPVLE---LEERDLSDVR 71 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-------CEEEECCCSSCC--SSCCTTSSEEEC--SCGGG---CCHHHHTTEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCC-------EEEEEecCCccc--ccchhhhhhhcc--CCCee---EEeCccccCC
Confidence 368999999999999999999999887 799999864210 000000111000 00111 1233455999
Q ss_pred EEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEee
Q 020875 84 IAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLT 157 (320)
Q Consensus 84 vVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~t 157 (320)
+|||+|+.... ......+.+. |+..+.++++.+++.+ . .++|++|... +... .+.+ .....+...|+.+
T Consensus 72 ~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~-v-~~~v~~SS~~-v~~~~~~~~~~E-~~~~~p~~~Y~~s 146 (321)
T 3vps_A 72 LVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVG-V-PKVVVGSTCE-VYGQADTLPTPE-DSPLSPRSPYAAS 146 (321)
T ss_dssp EEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHT-C-CEEEEEEEGG-GGCSCSSSSBCT-TSCCCCCSHHHHH
T ss_pred EEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcC-C-CeEEEecCHH-HhCCCCCCCCCC-CCCCCCCChhHHH
Confidence 99999986531 0122233456 9999999999999886 3 3566666422 1000 0001 0111223457778
Q ss_pred hhhHHHHHHHHHHHcCC-CCCCeeeeEEEcCCC
Q 020875 158 RLDHNRALGQISEKLNV-QVSDVKNVIIWGNHS 189 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v-~~~~v~~~~v~G~hg 189 (320)
+....++...+++..++ +..-++...|+|...
T Consensus 147 K~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~ 179 (321)
T 3vps_A 147 KVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGE 179 (321)
T ss_dssp HHHHHHHHHHHHHSSSSCEEEEEEECEEECTTC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeccccCcCC
Confidence 88888888888888888 777788777888644
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.4e-10 Score=98.80 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=96.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
++||+||||+|++|++++..|+..|+ +|++++++.... +. ........++....++.++++++|+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~-~~-------~~~~~~~~Dl~d~~~~~~~~~~~d~ 66 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAH-------EVRLSDIVDLGA-AE-------AHEEIVACDLADAQAVHDLVKDCDG 66 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEE-------EEEECCSSCCCC-CC-------TTEEECCCCTTCHHHHHHHHTTCSE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCC-------EEEEEeCCCccc-cC-------CCccEEEccCCCHHHHHHHHcCCCE
Confidence 35899999999999999999998886 899999875311 10 0000111222222346678899999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH----HHHHHHCCCCCCCcEEEeehhh
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCLTRLD 160 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~----~~~~~~~~~~~~~~i~~~t~ld 160 (320)
|||+|+... ..+..+.+..|+....++++.+.+.+ . .++|++|+....-. ..+.+. ....+...++.++..
T Consensus 67 vi~~a~~~~--~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~iv~~SS~~~~~~~~~~~~~~E~-~~~~~~~~Y~~sK~~ 141 (267)
T 3ay3_A 67 IIHLGGVSV--ERPWNDILQANIIGAYNLYEAARNLG-K-PRIVFASSNHTIGYYPRTTRIDTE-VPRRPDSLYGLSKCF 141 (267)
T ss_dssp EEECCSCCS--CCCHHHHHHHTHHHHHHHHHHHHHTT-C-CEEEEEEEGGGSTTSBTTSCBCTT-SCCCCCSHHHHHHHH
T ss_pred EEECCcCCC--CCCHHHHHHHHHHHHHHHHHHHHHhC-C-CEEEEeCCHHHhCCCCCCCCCCCC-CCCCCCChHHHHHHH
Confidence 999998752 33456778899999999999998764 2 36676664321000 000000 001122346666666
Q ss_pred HHHHHHHHHHHcCCCCCCee
Q 020875 161 HNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 161 ~~r~~~~~a~~l~v~~~~v~ 180 (320)
..++...+++..+++...++
T Consensus 142 ~e~~~~~~~~~~gi~~~~lr 161 (267)
T 3ay3_A 142 GEDLASLYYHKFDIETLNIR 161 (267)
T ss_dssp HHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 66666666666666544444
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=93.47 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=75.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc--hhHHHHHHHhcccCCCCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE--ALNGVKMELVDAAFPLLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~--~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (320)
|+..+|||+|+||+|++|++++..|+++|... +|+++++++... .+.....|+.+. .++.++
T Consensus 1 M~~~~~~vlVtGatG~iG~~l~~~l~~~g~~~-----~V~~~~r~~~~~~~~~~~~~~D~~~~-----------~~~~~~ 64 (215)
T 2a35_A 1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTLA-----KVIAPARKALAEHPRLDNPVGPLAEL-----------LPQLDG 64 (215)
T ss_dssp ---CCCEEEEECTTSHHHHHHHHHHHHCTTCC-----EEECCBSSCCCCCTTEECCBSCHHHH-----------GGGCCS
T ss_pred CCCCCceEEEECCCcHHHHHHHHHHHhCCCCC-----eEEEEeCCCcccCCCceEEeccccCH-----------HHHHHh
Confidence 65556899999999999999999999988632 788888865320 011111222222 234444
Q ss_pred cCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+ +|+||+++|.......+..+++..|+....++++.+.+.+ . .++|++|.
T Consensus 65 ~--~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~~v~~Ss 114 (215)
T 2a35_A 65 S--IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMG-A-RHYLVVSA 114 (215)
T ss_dssp C--CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTT-C-CEEEEECC
T ss_pred h--hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcC-C-CEEEEECC
Confidence 4 8999999987542234566788899999999999998875 2 35677765
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-10 Score=104.14 Aligned_cols=171 Identities=13% Similarity=0.068 Sum_probs=103.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc----chhHHHHHHHhc---ccC-CCCcceEEeCChhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA----EALNGVKMELVD---AAF-PLLKGVVATTDAVE 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~----~~~~~~~~dl~~---~~~-~~~~~v~~~~~~~~ 77 (320)
|||+||||+|++|++++..|++.|+ +|+++|++... +........+.. ... ....++....++.+
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~ 75 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGY-------LPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQR 75 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-------CEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHH
Confidence 6899999999999999999999886 78888875321 000111111211 000 01122222223455
Q ss_pred hcC--CCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCC
Q 020875 78 ACT--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIP 149 (320)
Q Consensus 78 al~--~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~ 149 (320)
+++ ++|+|||+|+..... ..+..+.+..|+..+.++++.+++.+ . .++|++|+.. +... .+.+. ....
T Consensus 76 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~iv~~SS~~-~~g~~~~~~~~E~-~~~~ 151 (348)
T 1ek6_A 76 LFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG-V-KNLVFSSSAT-VYGNPQYLPLDEA-HPTG 151 (348)
T ss_dssp HHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEEEEGG-GGCSCSSSSBCTT-SCCC
T ss_pred HHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhC-C-CEEEEECcHH-HhCCCCCCCcCCC-CCCC
Confidence 666 899999999864311 12345678899999999999998864 2 3566666422 1100 00000 0111
Q ss_pred C-CcEEEeehhhHHHHHHHHHHHcC--CCCCCeeeeEEEcCC
Q 020875 150 A-KNITCLTRLDHNRALGQISEKLN--VQVSDVKNVIIWGNH 188 (320)
Q Consensus 150 ~-~~i~~~t~ld~~r~~~~~a~~l~--v~~~~v~~~~v~G~h 188 (320)
+ ...|+.++....++...+++. + ++...++...|+|.+
T Consensus 152 p~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~ 192 (348)
T 1ek6_A 152 GCTNPYGKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAH 192 (348)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCC
T ss_pred CCCCchHHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCC
Confidence 2 335777777777777777766 5 777777877778864
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-09 Score=99.05 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=96.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~a 82 (320)
.|+|+||||+|++|++++..|++.|+ +|++++++.... .....++... .....++....++.++++ ++
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~--~~~~~~l~~v-~~~~~Dl~d~~~~~~~~~~~~~ 89 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQGH-------EILVIDNFATGK--REVLPPVAGL-SVIEGSVTDAGLLERAFDSFKP 89 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGTC-------EEEEEECCSSSC--GGGSCSCTTE-EEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCccc--hhhhhccCCc-eEEEeeCCCHHHHHHHHhhcCC
Confidence 47999999999999999999999886 899999853211 1000001000 000112222223556677 99
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC--C------CCcEE
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI--P------AKNIT 154 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~--~------~~~i~ 154 (320)
|+|||+||..........+ +..|+..+.++++.+.+.+ . .++|++|+.. +. .. ..+. | +...|
T Consensus 90 D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~-~-~~iV~~SS~~-~~----~~-~~~~~~~~~E~~~~~~~Y 160 (330)
T 2pzm_A 90 THVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAG-V-KRLLNFQTAL-CY----GR-PATVPIPIDSPTAPFTSY 160 (330)
T ss_dssp SEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHT-C-SEEEEEEEGG-GG----CS-CSSSSBCTTCCCCCCSHH
T ss_pred CEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcC-C-CEEEEecCHH-Hh----CC-CccCCCCcCCCCCCCChH
Confidence 9999999875432112233 7889999999999999864 2 4677776432 11 00 0010 1 22244
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
+.++....+ +.+.++++...+|...++|...
T Consensus 161 ~~sK~~~e~----~~~~~~~~~~~iR~~~v~gp~~ 191 (330)
T 2pzm_A 161 GISKTAGEA----FLMMSDVPVVSLRLANVTGPRL 191 (330)
T ss_dssp HHHHHHHHH----HHHTCSSCEEEEEECEEECTTC
T ss_pred HHHHHHHHH----HHHHcCCCEEEEeeeeeECcCC
Confidence 555544433 3344477878888556788654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=92.66 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=71.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~aDv 84 (320)
|||+||||+|++|++++..|+++|+ +|+++++++ +++. .+..... ....++....+ +++.++|+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~--~~~~----~~~~~~~~~~~~D~~d~~~--~~~~~~d~ 65 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH-------EVLAVVRDP--QKAA----DRLGATVATLVKEPLVLTE--ADLDSVDA 65 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHH----HHTCTTSEEEECCGGGCCH--HHHTTCSE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC-------EEEEEEecc--cccc----cccCCCceEEecccccccH--hhcccCCE
Confidence 6899999999999999999999987 899999863 2222 1111110 00112222112 77899999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
||++||....+.. ...|+..++++++.+++.+ .++|++|+.
T Consensus 66 vi~~ag~~~~~~~-----~~~n~~~~~~l~~a~~~~~---~~~v~~SS~ 106 (224)
T 3h2s_A 66 VVDALSVPWGSGR-----GYLHLDFATHLVSLLRNSD---TLAVFILGS 106 (224)
T ss_dssp EEECCCCCTTSSC-----THHHHHHHHHHHHTCTTCC---CEEEEECCG
T ss_pred EEECCccCCCcch-----hhHHHHHHHHHHHHHHHcC---CcEEEEecc
Confidence 9999987522111 3568899999999998864 567777643
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-09 Score=95.53 Aligned_cols=153 Identities=15% Similarity=0.103 Sum_probs=93.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC- 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al- 79 (320)
|+.++++|+||||+|++|++++..|++.|. +|++.+++. +++.....++.........++....+..+++
T Consensus 1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 71 (281)
T 3m1a_A 1 MSESAKVWLVTGASSGFGRAIAEAAVAAGD-------TVIGTARRT--EALDDLVAAYPDRAEAISLDVTDGERIDVVAA 71 (281)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHCTTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhccCCceEEEeeCCCHHHHHHHHH
Confidence 776778999999999999999999999987 899999874 3333222221110000111222212222333
Q ss_pred ------CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 80 ------TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+.|+|||.||..... ..+ ....+..|+.. ++.+++.+++.. ..++|++|+....
T Consensus 72 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~------- 142 (281)
T 3m1a_A 72 DVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG--SGSVVNISSFGGQ------- 142 (281)
T ss_dssp HHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-------
T ss_pred HHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEEcCcccc-------
Confidence 3789999999974321 122 33467788888 777777777664 3678888764321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.++...|+.++.....+-..+++.+.
T Consensus 143 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 170 (281)
T 3m1a_A 143 --LSFAGFSAYSATKAALEQLSEGLADEVA 170 (281)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 2334434577777766777777777754
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-09 Score=88.86 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=73.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhc
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al 79 (320)
|+. |||+|+||+|++|++++..|++.|+ +|+++++++. ++.. +..... ....++....++.+++
T Consensus 1 M~~--~~ilVtGatG~iG~~l~~~l~~~g~-------~V~~~~r~~~--~~~~----~~~~~~~~~~~D~~~~~~~~~~~ 65 (206)
T 1hdo_A 1 MAV--KKIAIFGATGQTGLTTLAQAVQAGY-------EVTVLVRDSS--RLPS----EGPRPAHVVVGDVLQAADVDKTV 65 (206)
T ss_dssp CCC--CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCGG--GSCS----SSCCCSEEEESCTTSHHHHHHHH
T ss_pred CCC--CEEEEEcCCcHHHHHHHHHHHHCCC-------eEEEEEeChh--hccc----ccCCceEEEEecCCCHHHHHHHH
Confidence 543 7999999999999999999999886 8999998642 2110 000000 0011222223466788
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+++|+||++++....... ...|+....++++.+++.+ . .++|++|..
T Consensus 66 ~~~d~vi~~a~~~~~~~~-----~~~n~~~~~~~~~~~~~~~-~-~~~v~~Ss~ 112 (206)
T 1hdo_A 66 AGQDAVIVLLGTRNDLSP-----TTVMSEGARNIVAAMKAHG-V-DKVVACTSA 112 (206)
T ss_dssp TTCSEEEECCCCTTCCSC-----CCHHHHHHHHHHHHHHHHT-C-CEEEEECCG
T ss_pred cCCCEEEECccCCCCCCc-----cchHHHHHHHHHHHHHHhC-C-CeEEEEeee
Confidence 999999999986542111 1367888999999998875 2 356666643
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.1e-10 Score=102.67 Aligned_cols=172 Identities=15% Similarity=0.077 Sum_probs=101.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc--chhHHHHHHHhcccC-CCCcceEEeCChhhhcC--
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAF-PLLKGVVATTDAVEACT-- 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~--~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~-- 80 (320)
|||+||||+|++|++++..|+++|+ +|+++|+.... +.+.. ...+..... ....++....++.++++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-------~V~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 72 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGH-------DVIILDNLCNSKRSVLPV-IERLGGKHPTFVEGDIRNEALMTEILHDH 72 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCTTHHHH-HHHHHTSCCEEEECCTTCHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEecCCCcchhHHHH-HHhhcCCcceEEEccCCCHHHHHHHhhcc
Confidence 5899999999999999999999887 88888864211 11111 011101000 01112222223344554
Q ss_pred CCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEE
Q 020875 81 GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNIT 154 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~ 154 (320)
++|+|||+||..... ..+..+.+..|+..+.++++.+++.+ . .++|++|.. .+... .+.+..+..|+...|
T Consensus 73 ~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~iv~~SS~-~~~g~~~~~~~~e~~~~~~~~~~Y 149 (338)
T 1udb_A 73 AIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-V-KNFIFSSSA-TVYGDNPKIPYVESFPTGTPQSPY 149 (338)
T ss_dssp TCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-C-CEEEEEEEG-GGGCSCCSSSBCTTSCCCCCSSHH
T ss_pred CCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcC-C-CeEEEEccH-HHhCCCCCCCcCcccCCCCCCChH
Confidence 589999999864211 12345678899999999999998875 2 356666642 11100 000000000113357
Q ss_pred EeehhhHHHHHHHHHHHc-CCCCCCeeeeEEEcCC
Q 020875 155 CLTRLDHNRALGQISEKL-NVQVSDVKNVIIWGNH 188 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l-~v~~~~v~~~~v~G~h 188 (320)
+.++....++...+++.. +++..-+|..+++|.|
T Consensus 150 ~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~ 184 (338)
T 1udb_A 150 GKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAH 184 (338)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCC
Confidence 777777777777777765 6776777777778875
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.7e-10 Score=104.81 Aligned_cols=173 Identities=9% Similarity=-0.057 Sum_probs=101.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc---hhHHHHHHHh--cc-cC-CCCcceEEeCChhhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE---ALNGVKMELV--DA-AF-PLLKGVVATTDAVEA 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~---~~~~~~~dl~--~~-~~-~~~~~v~~~~~~~~a 78 (320)
++|+||||+|+||++++..|++.|+ +|++++++.... .+.....++. .. .. ....++....++.++
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 101 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGY-------EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRW 101 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCC-------EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHH
Confidence 5899999999999999999999886 899999864210 1111100000 00 00 001112111234455
Q ss_pred cCC--CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcC---CCeEEEEEcCcchhhHH---HHHHHCCCC
Q 020875 79 CTG--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAA---PNCKVLVVANPANTNAL---ILKEFAPSI 148 (320)
Q Consensus 79 l~~--aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~---~~~~viv~snP~~~~~~---~~~~~~~~~ 148 (320)
+++ .|+|||+|+..... ..+..+.+..|+..+.++++.+.+... +.+++|++|+.. +... .+.+ ....
T Consensus 102 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~-vyg~~~~~~~E-~~~~ 179 (381)
T 1n7h_A 102 IDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSE-MFGSTPPPQSE-TTPF 179 (381)
T ss_dssp HHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGG-GGTTSCSSBCT-TSCC
T ss_pred HHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHH-HhCCCCCCCCC-CCCC
Confidence 664 59999999865321 123456778899999999999988641 124777776432 1000 0001 0112
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
++...|+.++....++...+++.++++...++.+.++|.
T Consensus 180 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp 218 (381)
T 1n7h_A 180 HPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESP 218 (381)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECT
T ss_pred CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCC
Confidence 233457788888888877788888876544554445563
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.6e-09 Score=101.84 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=94.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
+|||+||||+|++|++++..|++.|+ +|+.++++.. +......|+. ....++++++|+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~-------~V~~l~R~~~--~~~~v~~d~~-------------~~~~~~l~~~D~ 204 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH-------EVIQLVRKEP--KPGKRFWDPL-------------NPASDLLDGADV 204 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESSSC--CTTCEECCTT-------------SCCTTTTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCC--Cccceeeccc-------------chhHHhcCCCCE
Confidence 78999999999999999999999987 8999998752 2211112221 124567889999
Q ss_pred EEEeCCCCCCC---CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH-----HHHHHHCCCCCCCcEEEe
Q 020875 85 AVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA-----LILKEFAPSIPAKNITCL 156 (320)
Q Consensus 85 Vi~~ag~~~~~---~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~-----~~~~~~~~~~~~~~i~~~ 156 (320)
|||+|+..... .....+++..|+..+.++++.+.+.. ...++|++|+ +.+.. ..+.+ .... +...++.
T Consensus 205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~-~~~r~V~~SS-~~vyg~~~~~~~~~E-~~~~-~~~~y~~ 280 (516)
T 3oh8_A 205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAEST-QCTTMISASA-VGFYGHDRGDEILTE-ESES-GDDFLAE 280 (516)
T ss_dssp EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCS-SCCEEEEEEE-GGGGCSEEEEEEECT-TSCC-CSSHHHH
T ss_pred EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEeCc-ceEecCCCCCCccCC-CCCC-CcChHHH
Confidence 99999875321 22355678899999999999855443 2235666654 22110 00000 0001 1112222
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
+......+. ..++..|++..-++...|+|..+
T Consensus 281 ~~~~~E~~~-~~~~~~gi~~~ilRp~~v~Gp~~ 312 (516)
T 3oh8_A 281 VCRDWEHAT-APASDAGKRVAFIRTGVALSGRG 312 (516)
T ss_dssp HHHHHHHTT-HHHHHTTCEEEEEEECEEEBTTB
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEEeeEEECCCC
Confidence 222222222 23456688888888888889653
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.7e-09 Score=93.10 Aligned_cols=116 Identities=11% Similarity=0.107 Sum_probs=77.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+||||+|++|++++..|++.|+.. +|+++++++. ++.... ... ......++....++.++++++|+
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~-----~V~~~~r~~~--~~~~~~--~~~-~~~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFS-----KVTLIGRRKL--TFDEEA--YKN-VNQEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCS-----EEEEEESSCC--CCCSGG--GGG-CEEEECCGGGGGGGGGGGSSCSE
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCC-----EEEEEEcCCC--Cccccc--cCC-ceEEecCcCCHHHHHHHhcCCCE
Confidence 4699999999999999999999988632 7889998652 111100 000 00011222222356677889999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
||++||.... ..+..+++..|+.....+++.+++.+ . .++|++|+.
T Consensus 88 vi~~ag~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~-~-~~iv~~SS~ 133 (242)
T 2bka_A 88 GFCCLGTTRG-KAGAEGFVRVDRDYVLKSAELAKAGG-C-KHFNLLSSK 133 (242)
T ss_dssp EEECCCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHTT-C-CEEEEECCT
T ss_pred EEECCCcccc-cCCcccceeeeHHHHHHHHHHHHHCC-C-CEEEEEccC
Confidence 9999986431 12245677889999999999998764 2 467777753
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-09 Score=96.24 Aligned_cols=153 Identities=15% Similarity=0.170 Sum_probs=98.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~aD 83 (320)
|||+||||+|++|++++..|+++|+ +|+.+++.+ .|+.+.. .+.++++ ++|
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~---------~D~~d~~-----------~~~~~~~~~~~d 58 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEY-------DIYPFDKKL---------LDITNIS-----------QVQQVVQEIRPH 58 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTE-------EEEEECTTT---------SCTTCHH-----------HHHHHHHHHCCS
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCC-------EEEEecccc---------cCCCCHH-----------HHHHHHHhcCCC
Confidence 4899999999999999999998886 899998742 3454433 4455666 699
Q ss_pred EEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH----HHHHHHCCCCCCCcEEEee
Q 020875 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA----LILKEFAPSIPAKNITCLT 157 (320)
Q Consensus 84 vVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~----~~~~~~~~~~~~~~i~~~t 157 (320)
+|||+|+..... ..+..+.+..|+..+.++++.+++.+ +++|++|+.. +.. ..+.+. ....+...++.+
T Consensus 59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~v~~SS~~-vy~~~~~~~~~E~-~~~~p~~~Y~~s 133 (287)
T 3sc6_A 59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVG---AKLVYISTDY-VFQGDRPEGYDEF-HNPAPINIYGAS 133 (287)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHT---CEEEEEEEGG-GSCCCCSSCBCTT-SCCCCCSHHHHH
T ss_pred EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEchhh-hcCCCCCCCCCCC-CCCCCCCHHHHH
Confidence 999999875421 13566788999999999999999885 3666666431 100 000000 011122345666
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCcccc
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~ 194 (320)
+....++...+ ..+..-++...|+|.++...++
T Consensus 134 K~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~~~~ 166 (287)
T 3sc6_A 134 KYAGEQFVKEL----HNKYFIVRTSWLYGKYGNNFVK 166 (287)
T ss_dssp HHHHHHHHHHH----CSSEEEEEECSEECSSSCCHHH
T ss_pred HHHHHHHHHHh----CCCcEEEeeeeecCCCCCcHHH
Confidence 66555544433 3344556666678865554444
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.5e-09 Score=97.16 Aligned_cols=114 Identities=12% Similarity=0.045 Sum_probs=74.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-c-CCCCcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-A-FPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~-~~~~~~v~~~~~~~~al~~ 81 (320)
++|||+||||+|++|++++..|++.|+ +|++++++.... .+ .+.+. . .....++....++.+++++
T Consensus 20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~-~~----~l~~~~~~~~~~~Dl~d~~~~~~~~~~ 87 (333)
T 2q1w_A 20 HMKKVFITGICGQIGSHIAELLLERGD-------KVVGIDNFATGR-RE----HLKDHPNLTFVEGSIADHALVNQLIGD 87 (333)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCC-GG----GSCCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-------EEEEEECCCccc-hh----hHhhcCCceEEEEeCCCHHHHHHHHhc
Confidence 458999999999999999999999886 899999864211 10 01100 0 0001122222234566777
Q ss_pred --CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 82 --VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 82 --aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+|+|||+|+..........+ +..|+..+.++++.+.+.+ . .++|++|+
T Consensus 88 ~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~-~-~~iV~~SS 137 (333)
T 2q1w_A 88 LQPDAVVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNN-V-GRFVYFQT 137 (333)
T ss_dssp HCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTT-C-SEEEEEEE
T ss_pred cCCcEEEECceecCCCccCChH-HHHHHHHHHHHHHHHHHhC-C-CEEEEECc
Confidence 99999999875432112223 7889999999999998864 2 36777765
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-09 Score=100.80 Aligned_cols=171 Identities=12% Similarity=0.023 Sum_probs=101.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc-hhHHHHHHHhcc------------cCCCCcceEE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-ALNGVKMELVDA------------AFPLLKGVVA 71 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~-~~~~~~~dl~~~------------~~~~~~~v~~ 71 (320)
+++|+||||+|++|++++..|+..|. +|+++++++... .+......+... ......++..
T Consensus 69 ~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d 141 (427)
T 4f6c_A 69 LGNTLLTGATGFLGAYLIEALQGYSH-------RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFEC 141 (427)
T ss_dssp CEEEEEECTTSHHHHHHHHHHTTTEE-------EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC--
T ss_pred CCEEEEecCCcHHHHHHHHHHHcCCC-------EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCC
Confidence 56999999999999999999987776 899998875311 111111111110 0011233333
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH---------HH
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI---------LK 142 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~---------~~ 142 (320)
..++. ++.++|+|||+|+.... ..+..+.+..|+..+.++++.+.+ . ..++|++|+-. + ... +.
T Consensus 142 ~~~l~-~~~~~d~Vih~A~~~~~-~~~~~~~~~~Nv~g~~~l~~aa~~-~--~~~~v~~SS~~-~-G~~~~~~~~~~~~~ 214 (427)
T 4f6c_A 142 MDDVV-LPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ-H--HARLIYVSTIS-V-GTYFDIDTEDVTFS 214 (427)
T ss_dssp -CCCC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T--TCEEEEEEEGG-G-GSEECSSCSCCEEC
T ss_pred cccCC-CcCCCCEEEECCcccCC-CCCHHHHHHHHHHHHHHHHHHHHh-c--CCcEEEECchH-h-CCCccCCCCCcccc
Confidence 33333 67899999999987542 234556788999999999999988 3 24566665321 1 000 00
Q ss_pred HHCC--CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCC
Q 020875 143 EFAP--SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS 190 (320)
Q Consensus 143 ~~~~--~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~ 190 (320)
+... ..++...|+.++....++...+++ .|++...++...|+|..+.
T Consensus 215 E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~ 263 (427)
T 4f6c_A 215 EADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNG 263 (427)
T ss_dssp TTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSS
T ss_pred ccccccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCC
Confidence 0000 011223567777777777666654 5888888887778886543
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-09 Score=95.51 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=97.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~a 82 (320)
++||+||||+||+|++++..|+++|+ +|++++++. .|+.+.. ++.++++ ++
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~---------~Dl~d~~-----------~~~~~~~~~~~ 64 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNV-------EVIPTDVQD---------LDITNVL-----------AVNKFFNEKKP 64 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSE-------EEEEECTTT---------CCTTCHH-----------HHHHHHHHHCC
T ss_pred cceEEEECCCChHHHHHHHHHHhCCC-------eEEeccCcc---------CCCCCHH-----------HHHHHHHhcCC
Confidence 58999999999999999999999886 899998752 3454433 4556666 79
Q ss_pred cEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEe
Q 020875 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCL 156 (320)
Q Consensus 83 DvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~ 156 (320)
|+|||+|+..... ..+..+.+..|+..+.++++.+.+.+ +++|++|+.. +... .+.+. ....+...|+.
T Consensus 65 d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~---~~iv~~SS~~-v~~~~~~~~~~E~-~~~~~~~~Y~~ 139 (292)
T 1vl0_A 65 NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG---AEIVQISTDY-VFDGEAKEPITEF-DEVNPQSAYGK 139 (292)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT---CEEEEEEEGG-GSCSCCSSCBCTT-SCCCCCSHHHH
T ss_pred CEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEechHH-eECCCCCCCCCCC-CCCCCccHHHH
Confidence 9999999865311 12456678899999999999999875 3677776531 1000 00000 00112224555
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCcccc
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~ 194 (320)
++....++. +.++.+...+|...|+|. +...++
T Consensus 140 sK~~~E~~~----~~~~~~~~~lR~~~v~G~-~~~~~~ 172 (292)
T 1vl0_A 140 TKLEGENFV----KALNPKYYIVRTAWLYGD-GNNFVK 172 (292)
T ss_dssp HHHHHHHHH----HHHCSSEEEEEECSEESS-SSCHHH
T ss_pred HHHHHHHHH----HhhCCCeEEEeeeeeeCC-CcChHH
Confidence 555544443 334445556676667887 544333
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-09 Score=96.70 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=96.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC--Cc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG--VN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~--aD 83 (320)
|||+||||+|++|++++..|+ +|+ +|++++++. . ....|+.+.. ++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~-------~V~~~~r~~--~---~~~~D~~d~~-----------~~~~~~~~~~~d 56 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVG-------NLIALDVHS--K---EFCGDFSNPK-----------GVAETVRKLRPD 56 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTS-------EEEEECTTC--S---SSCCCTTCHH-----------HHHHHHHHHCCS
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCC-------eEEEecccc--c---cccccCCCHH-----------HHHHHHHhcCCC
Confidence 589999999999999999998 776 899999863 1 1123444332 45566765 99
Q ss_pred EEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEee
Q 020875 84 IAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLT 157 (320)
Q Consensus 84 vVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~t 157 (320)
+|||+|+.... ...+..+.+..|+..+.++++.+++.+ +++|++|+.. +... .+.+. ....+...++.+
T Consensus 57 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~---~~~v~~SS~~-vy~~~~~~~~~E~-~~~~p~~~Y~~s 131 (299)
T 1n2s_A 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG---AWVVHYSTDY-VFPGTGDIPWQET-DATSPLNVYGKT 131 (299)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT---CEEEEEEEGG-GSCCCTTCCBCTT-SCCCCSSHHHHH
T ss_pred EEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcC---CcEEEEeccc-EEeCCCCCCCCCC-CCCCCccHHHHH
Confidence 99999986531 123466788999999999999998864 3677766432 1000 00010 011122345555
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCcccc
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYP 194 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~ 194 (320)
+....++... +..+..-++...|+|.+..+.++
T Consensus 132 K~~~E~~~~~----~~~~~~ilRp~~v~G~~~~~~~~ 164 (299)
T 1n2s_A 132 KLAGEKALQD----NCPKHLIFRTSWVYAGKGNNFAK 164 (299)
T ss_dssp HHHHHHHHHH----HCSSEEEEEECSEECSSSCCHHH
T ss_pred HHHHHHHHHH----hCCCeEEEeeeeecCCCcCcHHH
Confidence 5555444333 33344556656678875543333
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=88.38 Aligned_cols=108 Identities=17% Similarity=0.087 Sum_probs=75.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc----CC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC----TG 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al----~~ 81 (320)
++|+||||+|++|++++..|+++|+ +|++++++...... ....|+.+.. +..+++ .+
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~-~~~~D~~~~~-----------~~~~~~~~~~~~ 62 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGH-------TVIGIDRGQADIEA-DLSTPGGRET-----------AVAAVLDRCGGV 62 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSSSSEEC-CTTSHHHHHH-----------HHHHHHHHHTTC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCC-------EEEEEeCChhHccc-cccCCcccHH-----------HHHHHHHHcCCC
Confidence 4899999999999999999999886 89999987532111 1234555432 233334 38
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCc
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANP 133 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP 133 (320)
.|+|||+||.... .....+.+..|+.....+++.+.+.. ....++|++|+.
T Consensus 63 ~d~vi~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 115 (255)
T 2dkn_A 63 LDGLVCCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSI 115 (255)
T ss_dssp CSEEEECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred ccEEEECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecc
Confidence 9999999997542 23456778899998888888776651 123577777754
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.1e-09 Score=96.45 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=101.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhc--CcCCCCCCeEEEEEecCCccch-hHHHHHHHhcccCCCCcceEEeCChhhhcC--C
Q 020875 7 RVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEA-LNGVKMELVDAAFPLLKGVVATTDAVEACT--G 81 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~--~~~~~~~~~ev~l~D~~~~~~~-~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~ 81 (320)
||+||||+|++|++++..|++. ++ +|++++++..... ......|+.+ ..++.++++ +
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~~~~~~~~~~~D~~d-----------~~~~~~~~~~~~ 62 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKK-------NVIASDIVQRDTGGIKFITLDVSN-----------RDEIDRAVEKYS 62 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGG-------GEEEEESSCCCCTTCCEEECCTTC-----------HHHHHHHHHHTT
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCC-------EEEEecCCCccccCceEEEecCCC-----------HHHHHHHHhhcC
Confidence 6899999999999999999987 65 7888887542110 0001112222 124555666 8
Q ss_pred CcEEEEeCCCCCCC-CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH-----HHHHCCCCCCCcEEE
Q 020875 82 VNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI-----LKEFAPSIPAKNITC 155 (320)
Q Consensus 82 aDvVi~~ag~~~~~-~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~-----~~~~~~~~~~~~i~~ 155 (320)
+|+|||+|+..... ..+..+.+..|+..+.++++.+++.+ . .++|++|+.. +.... ..+ .....+...|+
T Consensus 63 ~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~~v~~SS~~-~~~~~~~~~~~~e-~~~~~p~~~Y~ 138 (317)
T 3ajr_A 63 IDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-V-EKVVIPSTIG-VFGPETPKNKVPS-ITITRPRTMFG 138 (317)
T ss_dssp CCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEEEEGG-GCCTTSCSSSBCS-SSCCCCCSHHH
T ss_pred CcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcC-C-CEEEEecCHH-HhCCCCCCCCccc-cccCCCCchHH
Confidence 99999999864311 12345678899999999999998864 2 3566666432 11000 000 00011233577
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
.++....++...+++..+++...++...++|.
T Consensus 139 ~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~ 170 (317)
T 3ajr_A 139 VTKIAAELLGQYYYEKFGLDVRSLRYPGIISY 170 (317)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECEEECS
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCcEecc
Confidence 78887778777777888988888876667884
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.4e-09 Score=101.65 Aligned_cols=169 Identities=14% Similarity=0.045 Sum_probs=105.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc---CcCCCCCCeEEEEEecCCccchhHHHHHH-Hhc--------------cc-CC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG---VMLGTDQPVILHMLDIPPAAEALNGVKME-LVD--------------AA-FP 64 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~---~~~~~~~~~ev~l~D~~~~~~~~~~~~~d-l~~--------------~~-~~ 64 (320)
++++|+||||+|++|++++..|++. |. +|++++++++.........+ +.. .. ..
T Consensus 72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~-------~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (478)
T 4dqv_A 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDG-------RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEV 144 (478)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHHSCTTC-------EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhcCCCCC-------EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEE
Confidence 4689999999999999999999987 55 89999987532211110000 000 00 00
Q ss_pred CCcceE------EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH
Q 020875 65 LLKGVV------ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 65 ~~~~v~------~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~ 138 (320)
...++. ....+.+.++++|+|||+|+.... ....+.+..|+..+.++++.+.+.+ . .++|++|+- .+..
T Consensus 145 v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~-~-~~~V~iSS~-~v~~ 219 (478)
T 4dqv_A 145 VAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTK-L-KPFTYVSTA-DVGA 219 (478)
T ss_dssp EECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSS-C-CCEEEEEEG-GGGT
T ss_pred EEeECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCC-C-CeEEEEeeh-hhcC
Confidence 011111 111245566789999999987543 3334567899999999999998865 2 246666642 1110
Q ss_pred HHHHHHCCCCCCC-----------------cEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcC
Q 020875 139 LILKEFAPSIPAK-----------------NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGN 187 (320)
Q Consensus 139 ~~~~~~~~~~~~~-----------------~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~ 187 (320)
. .. ...+... ..|+.++....++...+++..|++..-++...|+|.
T Consensus 220 ~--~~-~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~ 282 (478)
T 4dqv_A 220 A--IE-PSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILAD 282 (478)
T ss_dssp T--SC-TTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECC
T ss_pred c--cC-CCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCC
Confidence 0 00 0001100 126777787888888888878999888998888884
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.1e-08 Score=85.26 Aligned_cols=157 Identities=21% Similarity=0.184 Sum_probs=93.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~ 77 (320)
|..+.++++||||+|.+|.+++..|++.|. +|+++|+++ +.++....++...... ...++....+..+
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 75 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGA-------AVVVADINA--EAAEAVAKQIVADGGTAISVAVDVSDPESAKA 75 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 455567899999999999999999999987 899999864 3444333344322110 0112211112222
Q ss_pred h-------cCCCcEEEEeCCCCC---C---CCCC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhh
Q 020875 78 A-------CTGVNIAVMVGGFPR---K---EGME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 78 a-------l~~aDvVi~~ag~~~---~---~~~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~ 137 (320)
. +...|++|+.||... . ...+ ..+.+..|+.. ++.+.+.+++.. ..++|++|+...
T Consensus 76 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~-- 151 (253)
T 3qiv_A 76 MADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG--GGAIVNQSSTAA-- 151 (253)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECC-----
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCEEEEECCccc--
Confidence 2 237899999999731 1 0112 34567788877 556666666653 467888876432
Q ss_pred HHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
++....|+.++.....+-..+++.++ +..|+..
T Consensus 152 ----------~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~ 184 (253)
T 3qiv_A 152 ----------WLYSNYYGLAKVGINGLTQQLSRELG--GRNIRIN 184 (253)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTT--TTTEEEE
T ss_pred ----------cCCCchhHHHHHHHHHHHHHHHHHHh--hcCeEEE
Confidence 12223578888877788888888875 3456643
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-09 Score=108.88 Aligned_cols=174 Identities=13% Similarity=0.047 Sum_probs=104.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccch-hHHHHHHHhcccCC-CCcceEEeCChhhhcC-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA-LNGVKMELVDAAFP-LLKGVVATTDAVEACT- 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~-~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~- 80 (320)
++++|+||||+|+||++++..|+++|+ +|++++++..... .......+...... ...++....++.++++
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 82 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENGY-------DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKE 82 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHh
Confidence 457999999999999999999999886 8999987642111 00001111111100 1122222223455666
Q ss_pred -CCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH--------HHHHCCCCC
Q 020875 81 -GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI--------LKEFAPSIP 149 (320)
Q Consensus 81 -~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~--------~~~~~~~~~ 149 (320)
++|+|||+|+..... .....+.+..|+..+.++++.+++.+ . .++|++|+. .+.... +.+. ....
T Consensus 83 ~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~-~~iV~~SS~-~vyg~~~~~~~~~~~~E~-~~~~ 158 (699)
T 1z45_A 83 YKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN-V-SKFVFSSSA-TVYGDATRFPNMIPIPEE-CPLG 158 (699)
T ss_dssp SCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-C-CEEEEEEEG-GGGCCGGGSTTCCSBCTT-SCCC
T ss_pred CCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEECcH-HHhCCCccccccCCcccc-CCCC
Confidence 899999999865311 12345678899999999999998875 2 356666642 211000 0000 0111
Q ss_pred CCcEEEeehhhHHHHHHHHHHH--cCCCCCCeeeeEEEcCC
Q 020875 150 AKNITCLTRLDHNRALGQISEK--LNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~--l~v~~~~v~~~~v~G~h 188 (320)
+...++.++....++...+++. .+++..-+|...|+|.+
T Consensus 159 p~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~ 199 (699)
T 1z45_A 159 PTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAH 199 (699)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCC
T ss_pred CCChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCC
Confidence 2235677777777777667666 57777777877778864
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.4e-09 Score=89.29 Aligned_cols=136 Identities=9% Similarity=0.042 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc---C
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---T 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al---~ 80 (320)
++|||+||||+|++|++++..|+ +|+ +|+++++++. ....|+.+.. +..+++ .
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~g~-------~V~~~~r~~~-----~~~~D~~~~~-----------~~~~~~~~~~ 57 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-KKA-------EVITAGRHSG-----DVTVDITNID-----------SIKKMYEQVG 57 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-TTS-------EEEEEESSSS-----SEECCTTCHH-----------HHHHHHHHHC
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-CCC-------eEEEEecCcc-----ceeeecCCHH-----------HHHHHHHHhC
Confidence 45799999999999999999999 886 8999998642 1123444332 233333 3
Q ss_pred CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEE
Q 020875 81 GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT 154 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~ 154 (320)
..|+||++||...... .+ ..+.+..|+.....+++.+.+.-....++|++|+.... .+.+....|
T Consensus 58 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~~~~Y 128 (202)
T 3d7l_A 58 KVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMME---------DPIVQGASA 128 (202)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGT---------SCCTTCHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhc---------CCCCccHHH
Confidence 5899999998653211 12 23456789999999999888763122567777654311 223333345
Q ss_pred EeehhhHHHHHHHHHHHc
Q 020875 155 CLTRLDHNRALGQISEKL 172 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l 172 (320)
+.++.....+...+++.+
T Consensus 129 ~~sK~~~~~~~~~~~~e~ 146 (202)
T 3d7l_A 129 AMANGAVTAFAKSAAIEM 146 (202)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 665555555555565554
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=7e-09 Score=95.85 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=70.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcC-----cCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGV-----MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEAC 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~-----~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al 79 (320)
|||+||||+|++|++++..|+++| + +|++++++.... . +.+... ....++....++.+++
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~-------~V~~~~r~~~~~--~-----~~~~~~~~~~~Dl~d~~~~~~~~ 67 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPW-------KVYGVARRTRPA--W-----HEDNPINYVQCDISDPDDSQAKL 67 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSE-------EEEEEESSCCCS--C-----CCSSCCEEEECCTTSHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCce-------EEEEEeCCCCcc--c-----cccCceEEEEeecCCHHHHHHHH
Confidence 689999999999999999999887 5 899999864321 1 000000 0011221122455677
Q ss_pred CC---CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhc
Q 020875 80 TG---VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121 (320)
Q Consensus 80 ~~---aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~ 121 (320)
++ +|+|||+|+... .+..+....|+..+.++++.+++.+
T Consensus 68 ~~~~~~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~ 109 (364)
T 2v6g_A 68 SPLTDVTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNC 109 (364)
T ss_dssp TTCTTCCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hcCCCCCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhc
Confidence 87 999999998653 3566788999999999999999874
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=98.74 E-value=7e-09 Score=91.54 Aligned_cols=156 Identities=11% Similarity=0.050 Sum_probs=95.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEE-eCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-TTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~-~~~~~~al~~aDv 84 (320)
++|+||||+|++|.+++..|++.|. +|+++|+++..........|+.+.. .+.. .....+.+...|+
T Consensus 23 k~vlITGas~gIG~~la~~l~~~G~-------~V~~~~r~~~~~~~~~~~~d~~d~~-----~v~~~~~~~~~~~g~iD~ 90 (251)
T 3orf_A 23 KNILVLGGSGALGAEVVKFFKSKSW-------NTISIDFRENPNADHSFTIKDSGEE-----EIKSVIEKINSKSIKVDT 90 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCTTSSEEEECSCSSHH-----HHHHHHHHHHTTTCCEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCcccccccceEEEeCCHH-----HHHHHHHHHHHHcCCCCE
Confidence 5799999999999999999999987 8999998753211111111221111 0000 0011222346799
Q ss_pred EEEeCCCCCCC----CC---CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEee
Q 020875 85 AVMVGGFPRKE----GM---ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157 (320)
Q Consensus 85 Vi~~ag~~~~~----~~---~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t 157 (320)
+|+.||..... .. +..+.+..|+.....+.+.+...-.+.+++|++|+.... .+.+..-.|+.+
T Consensus 91 li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---------~~~~~~~~Y~~s 161 (251)
T 3orf_A 91 FVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL---------NRTSGMIAYGAT 161 (251)
T ss_dssp EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCCTTBHHHHHH
T ss_pred EEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc---------cCCCCCchhHHH
Confidence 99999974321 11 133467789998888888877764234678888765422 133333356666
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+.....+-+.+++.++..+..|+..
T Consensus 162 Kaa~~~~~~~la~e~~~~~~gi~v~ 186 (251)
T 3orf_A 162 KAATHHIIKDLASENGGLPAGSTSL 186 (251)
T ss_dssp HHHHHHHHHHHTSTTSSSCTTCEEE
T ss_pred HHHHHHHHHHHHHHhcccCCCcEEE
Confidence 6666677777777766446677643
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-08 Score=87.58 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=67.0
Q ss_pred CCE-EEEEcCCChhHHHHHHHHH-hcCcCCCCCCeEEEEEecCCccc-hhHHHHHHHhccc-CCCCcceEEeCChhhhcC
Q 020875 5 PVR-VLVTGAAGQIGYALVPMIA-RGVMLGTDQPVILHMLDIPPAAE-ALNGVKMELVDAA-FPLLKGVVATTDAVEACT 80 (320)
Q Consensus 5 ~~k-I~IiGA~G~vG~~la~~L~-~~~~~~~~~~~ev~l~D~~~~~~-~~~~~~~dl~~~~-~~~~~~v~~~~~~~~al~ 80 (320)
||| |+||||+|++|++++..|+ ..|+ +|+++++++ + ++.... . .... .....++....++.++++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~-------~V~~~~r~~--~~~~~~~~-~-~~~~~~~~~~D~~d~~~~~~~~~ 72 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDM-------HITLYGRQL--KTRIPPEI-I-DHERVTVIEGSFQNPGXLEQAVT 72 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCC-------EEEEEESSH--HHHSCHHH-H-TSTTEEEEECCTTCHHHHHHHHT
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCc-------eEEEEecCc--cccchhhc-c-CCCceEEEECCCCCHHHHHHHHc
Confidence 345 9999999999999999999 7887 899999863 2 332111 0 1100 001123333335667889
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
++|+||+++|.. |+. .+.+++.+++.+ . .++|++|.
T Consensus 73 ~~d~vv~~ag~~-------------n~~-~~~~~~~~~~~~-~-~~iv~iSs 108 (221)
T 3r6d_A 73 NAEVVFVGAMES-------------GSD-MASIVKALSRXN-I-RRVIGVSM 108 (221)
T ss_dssp TCSEEEESCCCC-------------HHH-HHHHHHHHHHTT-C-CEEEEEEE
T ss_pred CCCEEEEcCCCC-------------Chh-HHHHHHHHHhcC-C-CeEEEEee
Confidence 999999999743 334 788888888765 2 35666664
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=7.3e-09 Score=104.00 Aligned_cols=169 Identities=13% Similarity=0.106 Sum_probs=105.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cC-CCCcceEEeCC-hhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF-PLLKGVVATTD-AVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~-~~~~~v~~~~~-~~~al 79 (320)
++|+|+||||+|++|++++..|++. |+ +|++++++.. .+.. +... .. ....++....+ ..+++
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~-------~V~~~~r~~~--~~~~----~~~~~~v~~v~~Dl~d~~~~~~~~~ 380 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDHY-------EVYGLDIGSD--AISR----FLNHPHFHFVEGDISIHSEWIEYHV 380 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSSE-------EEEEEESCCT--TTGG----GTTCTTEEEEECCTTTCHHHHHHHH
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCCC-------EEEEEEcCch--hhhh----hccCCceEEEECCCCCcHHHHHHhh
Confidence 4579999999999999999999987 66 8999998642 2111 1100 00 00011111111 34467
Q ss_pred CCCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCC------C
Q 020875 80 TGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAP------S 147 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~------~ 147 (320)
+++|+|||+|+..... ..+..+.+..|+..+.++++.+.+.+ .++|++|+.. +... .+.+..+ .
T Consensus 381 ~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~---~r~V~~SS~~-vyg~~~~~~~~E~~~~~~~~p~ 456 (660)
T 1z7e_A 381 KKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR---KRIIFPSTSE-VYGMCSDKYFDEDHSNLIVGPV 456 (660)
T ss_dssp HHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT---CEEEEECCGG-GGBTCCSSSBCTTTCCEEECCT
T ss_pred cCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC---CEEEEEecHH-HcCCCCCcccCCCccccccCcc
Confidence 7899999999865421 12345678899999999999998864 4677777532 1100 0000000 0
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.++...|+.++....++...+++..+++...++...|+|...
T Consensus 457 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~ 498 (660)
T 1z7e_A 457 NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL 498 (660)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTS
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCc
Confidence 011124677777777777777788899888888777788643
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.4e-08 Score=86.18 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=76.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhc--CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~--~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
.++++|+||||+|++|++++..|++. |+ +|+++++++ +++. ++.........++....++.++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~-------~V~~~~r~~--~~~~----~~~~~~~~~~~D~~d~~~~~~~~~ 68 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKF-------VAKGLVRSA--QGKE----KIGGEADVFIGDITDADSINPAFQ 68 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTC-------EEEEEESCH--HHHH----HTTCCTTEEECCTTSHHHHHHHHT
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCc-------EEEEEEcCC--Cchh----hcCCCeeEEEecCCCHHHHHHHHc
Confidence 34679999999999999999999998 55 899999863 2221 111110001122222235667789
Q ss_pred CCcEEEEeCCCCCC------------CC---CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 81 GVNIAVMVGGFPRK------------EG---MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 81 ~aDvVi~~ag~~~~------------~~---~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
++|+|||+||.... +. ....+.+..|+....++++.+++.. . .++|++|.
T Consensus 69 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~iv~~SS 133 (253)
T 1xq6_A 69 GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-V-KHIVVVGS 133 (253)
T ss_dssp TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-C-SEEEEEEE
T ss_pred CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcC-C-CEEEEEcC
Confidence 99999999986421 11 0112356889999999999998875 3 36676664
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.9e-09 Score=94.61 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=90.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc--hhHHHHHHHhcccCCCCcceEEeCChhhhcCC-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE--ALNGVKMELVDAAFPLLKGVVATTDAVEACTG- 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~--~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~- 81 (320)
+|||+||| +|++|++++..|++.|+ +|+.++++.... .++....|+.+ ..++.+++++
T Consensus 3 ~~~ilVtG-aG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~Dl~d-----------~~~~~~~~~~~ 63 (286)
T 3gpi_A 3 LSKILIAG-CGDLGLELARRLTAQGH-------EVTGLRRSAQPMPAGVQTLIADVTR-----------PDTLASIVHLR 63 (286)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECTTSCCCTTCCEEECCTTC-----------GGGCTTGGGGC
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCccccccCCceEEccCCC-----------hHHHHHhhcCC
Confidence 57999999 59999999999999887 799999864210 01111122222 2245566777
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEee
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLT 157 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~t 157 (320)
+|+|||+|+... .+..+....|+..+.++++.+++.+ . .++|++|... +... .+.+ .....+...++.+
T Consensus 64 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~-~-~~~v~~SS~~-vyg~~~~~~~~E-~~~~~p~~~Y~~s 136 (286)
T 3gpi_A 64 PEILVYCVAASE---YSDEHYRLSYVEGLRNTLSALEGAP-L-QHVFFVSSTG-VYGQEVEEWLDE-DTPPIAKDFSGKR 136 (286)
T ss_dssp CSEEEECHHHHH---HC-----CCSHHHHHHHHHHTTTSC-C-CEEEEEEEGG-GCCCCCSSEECT-TSCCCCCSHHHHH
T ss_pred CCEEEEeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhCC-C-CEEEEEcccE-EEcCCCCCCCCC-CCCCCCCChhhHH
Confidence 999999987532 2334567789999999999999754 2 3566666432 1000 0000 0011122345555
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCC
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS 190 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~ 190 (320)
+....++ . .. ++..-+|...|+|....
T Consensus 137 K~~~E~~-~----~~-~~~~ilR~~~v~G~~~~ 163 (286)
T 3gpi_A 137 MLEAEAL-L----AA-YSSTILRFSGIYGPGRL 163 (286)
T ss_dssp HHHHHHH-G----GG-SSEEEEEECEEEBTTBC
T ss_pred HHHHHHH-H----hc-CCeEEEecccccCCCch
Confidence 5554444 2 22 66667777778886544
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.3e-08 Score=86.63 Aligned_cols=160 Identities=17% Similarity=0.048 Sum_probs=91.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc--
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-- 79 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al-- 79 (320)
..+.++++||||+|.+|.+++..|++.|. +|++.|+++. .++....++.........++....+..+++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 74 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGA-------TVLGLDLKPP--AGEEPAAELGAAVRFRNADVTNEADATAALAF 74 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESSCC--------------CEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChH--HHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence 33457899999999999999999999997 8999998752 232222222110000011222212223333
Q ss_pred -----CCCcEEEEeCCCCCCCC-------C---CHHHHHHhhHHHHHHHHHHHhhhcC--------CCeEEEEEcCcchh
Q 020875 80 -----TGVNIAVMVGGFPRKEG-------M---ERKDVMSKNVSIYKAQASALEQHAA--------PNCKVLVVANPANT 136 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~~-------~---~r~~~~~~n~~~~~~i~~~i~~~~~--------~~~~viv~snP~~~ 136 (320)
...|++|+.||...... . +....+..|+.....+.+.+.+.-. ..+++|++|+....
T Consensus 75 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~ 154 (257)
T 3tpc_A 75 AKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAF 154 (257)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred HHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc
Confidence 38999999999753211 1 2334677888777777666655411 24678888764321
Q ss_pred hHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+|+.+. +..|+.
T Consensus 155 ---------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 188 (257)
T 3tpc_A 155 ---------DGQIGQAAYAASKGGVAALTLPAARELA--RFGIRV 188 (257)
T ss_dssp ---------HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---------cCCCCCcchHHHHHHHHHHHHHHHHHHH--HcCeEE
Confidence 1233333566666666667677777764 335553
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.7e-08 Score=85.83 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=93.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|+.+.++|+||||+|++|.+++..|+++|. +|++++++. +++.....++.........++....+..++++
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGA-------SAVLLDLPN--SGGEAQAKKLGNNCVFAPADVTSEKDVQTALA 78 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECTT--SSHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCc--HhHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 444557899999999999999999999987 899999874 23332222221100000112211122333333
Q ss_pred -------CCcEEEEeCCCCCCCC---------CC---HHHHHHhhHHHHHHHHHHHhhhcC--------CCeEEEEEcCc
Q 020875 81 -------GVNIAVMVGGFPRKEG---------ME---RKDVMSKNVSIYKAQASALEQHAA--------PNCKVLVVANP 133 (320)
Q Consensus 81 -------~aDvVi~~ag~~~~~~---------~~---r~~~~~~n~~~~~~i~~~i~~~~~--------~~~~viv~snP 133 (320)
..|+||+.||...... .+ ....+..|+.....+.+.+.+.-. ...++|++|+.
T Consensus 79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~ 158 (265)
T 2o23_A 79 LAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASV 158 (265)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred HHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCCh
Confidence 8999999998753211 12 334677888777777776665410 13567777754
Q ss_pred chhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
... .+.+....|+.++.....+-..+++.+. +..|+..
T Consensus 159 ~~~---------~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~ 196 (265)
T 2o23_A 159 AAF---------EGQVGQAAYSASKGGIVGMTLPIARDLA--PIGIRVM 196 (265)
T ss_dssp HHH---------HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred hhc---------CCCCCCchhHHHHHHHHHHHHHHHHHHh--hcCcEEE
Confidence 321 1223323456666655566666777654 3456533
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-08 Score=87.08 Aligned_cols=149 Identities=18% Similarity=0.161 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CCCCcceEEeCChhhh----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FPLLKGVVATTDAVEA---- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~~~a---- 78 (320)
+.++++||||+|++|++++..|++.|. +|+++++++ ++++....++.... .....++....+..++
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGA-------RLILIDREA--AALDRAAQELGAAVAARIVADVTDAEAMTAAAAEA 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHH
Confidence 346899999999999999999999986 899999864 33332222221100 0001122111122222
Q ss_pred --cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 --CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 --l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~----i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+.+.|+||+.||..... ..+ ..+.+..|+..... +.+.+++.. ..++|++|+.... .
T Consensus 81 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~---------~ 149 (254)
T 2wsb_A 81 EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG--AGAIVNLGSMSGT---------I 149 (254)
T ss_dssp HHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------S
T ss_pred HhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEecchhc---------c
Confidence 35789999999975321 112 23466778777444 444455543 3678888765421 1
Q ss_pred CCCCC--cEEEeehhhHHHHHHHHHHHc
Q 020875 147 SIPAK--NITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 147 ~~~~~--~i~~~t~ld~~r~~~~~a~~l 172 (320)
+.|.. ..|+.++.....+-..+++.+
T Consensus 150 ~~~~~~~~~Y~~sK~a~~~~~~~~~~~~ 177 (254)
T 2wsb_A 150 VNRPQFASSYMASKGAVHQLTRALAAEW 177 (254)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 22222 245666666666666677766
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.1e-08 Score=85.55 Aligned_cols=157 Identities=14% Similarity=0.109 Sum_probs=93.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC 79 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al 79 (320)
.+.++|+||||+|++|.+++..|++.|. +|+++|+++ ++++....++...... ...++....+..+++
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 79 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGA-------SVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALA 79 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHH
Confidence 3457999999999999999999999886 899999864 3333333333221100 011222112233333
Q ss_pred C-------CCcEEEEeCCCCCCC--CCC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 80 T-------GVNIAVMVGGFPRKE--GME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 80 ~-------~aDvVi~~ag~~~~~--~~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+ +.|+||+.||..... ..+ ..+.+..|+.....+.+.+. +.. ..++|++|+....
T Consensus 80 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~------- 150 (255)
T 1fmc_A 80 DFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAE------- 150 (255)
T ss_dssp HHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhc-------
Confidence 3 899999999875321 122 34567788888766666654 332 3567777754321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.++...|+.++.....+-..+++.+. +..++.
T Consensus 151 --~~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v 184 (255)
T 1fmc_A 151 --NKNINMTSYASSKAAASHLVRNMAFDLG--EKNIRV 184 (255)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred --CCCCCCcccHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 1233333567776666677777777764 345553
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-08 Score=89.22 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=94.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC---
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--- 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--- 80 (320)
+.++++||||+|++|.+++..|+++|. +|++.|++. ++++....++.........++....+..++++
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGA-------TVAIADIDI--ERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATV 77 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHH
Confidence 346899999999999999999999997 899999864 34443333332111011112222222233333
Q ss_pred ----CCcEEEEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 81 ----GVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 81 ----~aDvVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~i~~----~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+.|++|+.||...... ++..+.+..|+.....+.+.+.+ .. +.+++|++|+.... .
T Consensus 78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~---------~ 147 (259)
T 4e6p_A 78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQG-RGGKIINMASQAGR---------R 147 (259)
T ss_dssp HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGT---------S
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEECChhhc---------c
Confidence 8999999999753211 12344567888766666655443 32 35788888865421 2
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+.|..-.|+.++.-...+-+.+++.++ +..|+
T Consensus 148 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 179 (259)
T 4e6p_A 148 GEALVAIYCATKAAVISLTQSAGLDLI--KHRIN 179 (259)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhh--hcCCE
Confidence 333333567776666677777887774 34455
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-08 Score=86.00 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=88.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---- 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~---- 80 (320)
.++++||||+|++|.+++..|++.|+ +|++.++++ ++++....++.........++....+..++++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 77 (260)
T 1nff_A 7 GKVALVSGGARGMGASHVRAMVAEGA-------KVVFGDILD--EEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVT 77 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999987 899999864 33332222222111001112222222333343
Q ss_pred ---CCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 81 ---GVNIAVMVGGFPRKE---GME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 81 ---~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+.|++|+.||..... ..+ ..+.+..|+... +.+++.+++.. ..++|++|+.... .+
T Consensus 78 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~~ 146 (260)
T 1nff_A 78 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG--RGSIINISSIEGL---------AG 146 (260)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SC
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEeehhhc---------CC
Confidence 799999999975321 112 334677887776 45555555543 3678888764321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.|....|+.++.....+-+.+++.+.
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~la~e~~ 172 (260)
T 1nff_A 147 TVACHGYTATKFAVRGLTKSTALELG 172 (260)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhC
Confidence 33323456666655666666777653
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.6e-08 Score=84.52 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=87.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE-ecCCccchhHHHHHHHhcccCC---CCcceEEeCChh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV 76 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~-D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~ 76 (320)
|+.+.++|+||||+|++|.+++..|+++|. +|+++ ++++ +.++....++...... ...++....+..
T Consensus 1 M~l~~~~vlItGasggiG~~~a~~l~~~G~-------~V~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 71 (247)
T 2hq1_A 1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGA-------NIVLNGSPAS--TSLDATAEEFKAAGINVVVAKGDVKNPEDVE 71 (247)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEECTTC--SHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCcCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 777778999999999999999999999986 78888 4443 2333222233221100 011221111222
Q ss_pred hhc-------CCCcEEEEeCCCCCC------CCCCHHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHH
Q 020875 77 EAC-------TGVNIAVMVGGFPRK------EGMERKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALIL 141 (320)
Q Consensus 77 ~al-------~~aDvVi~~ag~~~~------~~~~r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~ 141 (320)
+++ .+.|+||+.||.... +..+..+.+..|+.....+.+.+.+.. ....++|++|+.....
T Consensus 72 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---- 147 (247)
T 2hq1_A 72 NMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGII---- 147 (247)
T ss_dssp HHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC---------
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc----
Confidence 333 379999999987532 112344577888887666655554321 0236788887643211
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.|....|+.++.....+-..+++.++ +..++.
T Consensus 148 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 180 (247)
T 2hq1_A 148 -----GNAGQANYAASKAGLIGFTKSIAKEFA--AKGIYC 180 (247)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -----CCCCCcHhHHHHHHHHHHHHHHHHHHH--HcCcEE
Confidence 122223456666656666677777764 234553
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.5e-09 Score=91.75 Aligned_cols=104 Identities=15% Similarity=0.244 Sum_probs=72.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC--Cc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG--VN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~--aD 83 (320)
|||+||||+|++|++++..|++ ++ +|+++++++..+ .+...|+.+. .++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~-------~V~~~~r~~~~~--~~~~~Dl~~~-----------~~~~~~~~~~~~d 59 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RH-------EVIKVYNSSEIQ--GGYKLDLTDF-----------PRLEDFIIKKRPD 59 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TS-------CEEEEESSSCCT--TCEECCTTSH-----------HHHHHHHHHHCCS
T ss_pred CEEEEECCCChhHHHHHHHHhc-CC-------eEEEecCCCcCC--CCceeccCCH-----------HHHHHHHHhcCCC
Confidence 5899999999999999999985 64 789999864211 1111222222 234555665 99
Q ss_pred EEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 84 vVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+|||+||..... ..+..+.+..|+....++++.+.+.+ +++|++|+.
T Consensus 60 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~iv~~SS~ 108 (273)
T 2ggs_A 60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID---SYIVHISTD 108 (273)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT---CEEEEEEEG
T ss_pred EEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC---CeEEEEecc
Confidence 999999865321 12455678899999999999998764 467777653
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-08 Score=89.52 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=70.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~~aD 83 (320)
|||+||||+|++|++++..|.+. |. +|++++++++ ++. ++...... ...++....++.++++++|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~-------~V~~~~R~~~--~~~----~~~~~~v~~~~~D~~d~~~l~~~~~~~d 67 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHID-------HFHIGVRNVE--KVP----DDWRGKVSVRQLDYFNQESMVEAFKGMD 67 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCT-------TEEEEESSGG--GSC----GGGBTTBEEEECCTTCHHHHHHHTTTCS
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCC-------cEEEEECCHH--HHH----HhhhCCCEEEEcCCCCHHHHHHHHhCCC
Confidence 68999999999999999998886 65 7888888642 221 11111100 1122322335678899999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+||++++.... ...|+..++++++.+++.+ . .++|++|.
T Consensus 68 ~vi~~a~~~~~--------~~~~~~~~~~l~~aa~~~g-v-~~iv~~Ss 106 (289)
T 3e48_A 68 TVVFIPSIIHP--------SFKRIPEVENLVYAAKQSG-V-AHIIFIGY 106 (289)
T ss_dssp EEEECCCCCCS--------HHHHHHHHHHHHHHHHHTT-C-CEEEEEEE
T ss_pred EEEEeCCCCcc--------chhhHHHHHHHHHHHHHcC-C-CEEEEEcc
Confidence 99999985431 1347788899999999875 2 35666654
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.1e-09 Score=100.05 Aligned_cols=171 Identities=12% Similarity=0.032 Sum_probs=98.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc-hhHHHHHHHhcc--------cCC----CCcceE
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE-ALNGVKMELVDA--------AFP----LLKGVV 70 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~-~~~~~~~dl~~~--------~~~----~~~~v~ 70 (320)
.+++|+||||+||+|++++..|...|. +|++++++.+.. ........+... ... ...++.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~ 221 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSH-------RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFE 221 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEE-------EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTT
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCC-------EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCc
Confidence 357999999999999999999977665 899998875321 111111111110 000 011221
Q ss_pred EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH---------H
Q 020875 71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI---------L 141 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~---------~ 141 (320)
....+. ++.++|+|||+|+... ...+..++...|+..++++++.+.+ . . .+++++|.-. + ... +
T Consensus 222 d~~~l~-~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~-~-~~~v~iSS~~-v-G~~~~~~~~~~~~ 294 (508)
T 4f6l_B 222 CMDDVV-LPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-H-H-ARLIYVSTIS-V-GTYFDIDTEDVTF 294 (508)
T ss_dssp BCSSCC-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-T-T-CEEEEEEESC-T-TSEECTTCSCCEE
T ss_pred ccccCC-CccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-C-C-CcEEEeCChh-h-ccCCccCCcCccc
Confidence 111222 5679999999998653 2233455678899999999999988 3 2 4566665321 1 000 0
Q ss_pred HHHCC--CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 142 KEFAP--SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 142 ~~~~~--~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.+... ...+...|+.++....++...+++ .|++..-+|...|+|...
T Consensus 295 ~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~ 343 (508)
T 4f6l_B 295 SEADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYN 343 (508)
T ss_dssp CTTCSCSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSS
T ss_pred ccccccccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCC
Confidence 00000 001223467777777777666554 588888888777788644
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-08 Score=86.88 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC-cCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CCCCcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~~~~~v~~~~~~~~al~~ 81 (320)
.+++|+||||+|++|++++..|++.| + +|++++++++ ++.. +.... .....++....++.+++++
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~-------~V~~~~R~~~--~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~ 88 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTI-------KQTLFARQPA--KIHK----PYPTNSQIIMGDVLNHAALKQAMQG 88 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTE-------EEEEEESSGG--GSCS----SCCTTEEEEECCTTCHHHHHHHHTT
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCc-------eEEEEEcChh--hhcc----cccCCcEEEEecCCCHHHHHHHhcC
Confidence 45689999999999999999999988 5 8999998742 2211 00000 0011222223356778899
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+|+||++++... . + ..++.+++.+++.+ . .++|++|.
T Consensus 89 ~D~vv~~a~~~~-----~-~------~~~~~~~~~~~~~~-~-~~iV~iSS 125 (236)
T 3qvo_A 89 QDIVYANLTGED-----L-D------IQANSVIAAMKACD-V-KRLIFVLS 125 (236)
T ss_dssp CSEEEEECCSTT-----H-H------HHHHHHHHHHHHTT-C-CEEEEECC
T ss_pred CCEEEEcCCCCc-----h-h------HHHHHHHHHHHHcC-C-CEEEEEec
Confidence 999999987421 1 1 23567788888765 2 46777775
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.9e-08 Score=84.75 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=87.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh--
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-- 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-- 78 (320)
|+...++|+||||+|++|++++..|++.|+ +|++.++++ ++++....++.... ....++....+..++
T Consensus 1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~ 70 (234)
T 2ehd_A 1 MEGMKGAVLITGASRGIGEATARLLHAKGY-------RVGLMARDE--KRLQALAAELEGAL-PLPGDVREEGDWARAVA 70 (234)
T ss_dssp ---CCCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhhce-EEEecCCCHHHHHHHHH
Confidence 766667899999999999999999999987 899999863 33332222221100 001122111122222
Q ss_pred -----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+.+.|+||+.||...... .+ ..+.+..|+.... .+++.+++.. ..++|++|+....
T Consensus 71 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~------- 141 (234)
T 2ehd_A 71 AMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRG--GGTIVNVGSLAGK------- 141 (234)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCTTTT-------
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CcEEEEECCchhc-------
Confidence 347899999998753211 12 3446677877665 4444455432 4678888764321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+-..++..+. +..++.
T Consensus 142 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 175 (234)
T 2ehd_A 142 --NPFKGGAAYNASKFGLLGLAGAAMLDLR--EANVRV 175 (234)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCCchhhHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1223222455555555556556666654 335553
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.7e-08 Score=84.48 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc----cC-CCCcceEEeCChhh
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA----AF-PLLKGVVATTDAVE 77 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~----~~-~~~~~v~~~~~~~~ 77 (320)
.+.++++||||+|++|.+++..|++.|. +|++.++++ ++++....++... .. ....++....+..+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 75 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGA-------RLLLFSRNR--EKLEAAASRIASLVSGAQVDIVAGDIREPGDIDR 75 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHH
Confidence 3457899999999999999999999987 899999864 3333333333211 00 00112222222333
Q ss_pred hcC------CCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 78 ACT------GVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 78 al~------~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
+++ +.|++|+.||...... . +....+..|+... +.+.+.+++.. ..++|++|+....
T Consensus 76 ~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~----- 148 (260)
T 2z1n_A 76 LFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG--WGRMVYIGSVTLL----- 148 (260)
T ss_dssp HHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-----
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhc-----
Confidence 333 5999999999753211 1 2344677787776 44455554543 3678888764321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 149 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 182 (260)
T 2z1n_A 149 ----RPWQDLALSNIMRLPVIGVVRTLALELA--PHGVTV 182 (260)
T ss_dssp ----SCCTTBHHHHHHTHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ----CCCCCCchhHHHHHHHHHHHHHHHHHHh--hhCeEE
Confidence 1233323456666555666667777764 344553
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=7.4e-08 Score=87.97 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=95.8
Q ss_pred CCCC-CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH----H---HHhccc---CC-----
Q 020875 1 MAKE-PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK----M---ELVDAA---FP----- 64 (320)
Q Consensus 1 m~~~-~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~----~---dl~~~~---~~----- 64 (320)
|..+ ..||+|+| +|.+|+.+|..++..|+ +|+|+|+++ +.+..-. . .+.... ..
T Consensus 1 Ma~p~~~~VaViG-aG~MG~giA~~~a~~G~-------~V~l~D~~~--~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~ 70 (319)
T 3ado_A 1 MASPAAGDVLIVG-SGLVGRSWAMLFASGGF-------RVKLYDIEP--RQITGALENIRKEMKSLQQSGSLKGSLSAEE 70 (319)
T ss_dssp ------CEEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSCH--HHHHHHHHHHHHHHHHHHHTTCCCSSSCHHH
T ss_pred CCCCCCCeEEEEC-CcHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 5554 36999999 59999999999999998 899999974 2222111 1 111110 01
Q ss_pred CCcceEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 65 ~~~~v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
....++.++++.+++++||+||-++ -+|.++-+++...+.++++|++ |++||.+.+...-+.+.
T Consensus 71 ~l~~i~~~~~l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~a--IlaSNTSsl~is~ia~~ 134 (319)
T 3ado_A 71 QLSLISSCTNLAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRV--VLSSSSSCLLPSKLFTG 134 (319)
T ss_dssp HHHTEEEECCHHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSS--EEEECCSSCCHHHHHTT
T ss_pred HHhhcccccchHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhcc--eeehhhhhccchhhhhh
Confidence 1245778889989999999999864 1345677999999999997775 67888877644444432
Q ss_pred CCCC-----------CCC--c---EEEe--ehhhHHHHHHHHHHHcCCCC
Q 020875 145 APSI-----------PAK--N---ITCL--TRLDHNRALGQISEKLNVQV 176 (320)
Q Consensus 145 ~~~~-----------~~~--~---i~~~--t~ld~~r~~~~~a~~l~v~~ 176 (320)
... |+. + |+.+ |.-++......+++.+|..|
T Consensus 135 -~~~p~r~ig~HffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~p 183 (319)
T 3ado_A 135 -LAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSP 183 (319)
T ss_dssp -CTTGGGEEEEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred -ccCCCcEEEecCCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCcc
Confidence 222 222 1 2333 55666666666778887554
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.8e-08 Score=86.07 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
+.++|+||||+|++|++++..|+++|. +|+++|++. +++.....++...... ...++....+..+++
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 82 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGA-------RVIIADLDE--AMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVR 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 346899999999999999999999986 899999863 3333333333221100 011222112233333
Q ss_pred ------CCCcEEEEeCCCCC-C-C--CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 ------TGVNIAVMVGGFPR-K-E--GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~-~-~--~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|+||+.||... . + ..+ ..+.+..|+.....+++.+.++- ....++|++|+....
T Consensus 83 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~-------- 154 (260)
T 3awd_A 83 SVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGL-------- 154 (260)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhc--------
Confidence 37899999998753 1 1 122 24467788887777766655421 024677777764321
Q ss_pred CCCCCCC--cEEEeehhhHHHHHHHHHHHc
Q 020875 145 APSIPAK--NITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 145 ~~~~~~~--~i~~~t~ld~~r~~~~~a~~l 172 (320)
.+.|.. ..|+.++.....+-..+++.+
T Consensus 155 -~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~ 183 (260)
T 3awd_A 155 -IVNRPQQQAAYNASKAGVHQYIRSLAAEW 183 (260)
T ss_dssp -SCCSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 112222 346666666666766677765
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=83.05 Aligned_cols=151 Identities=14% Similarity=0.071 Sum_probs=90.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC---
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--- 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--- 80 (320)
+.++|+||||+|++|++++..|++.|. +|+++++++ +.++....++.... ....++....+..++++
T Consensus 6 ~~~~vlVTGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~ 75 (244)
T 1cyd_A 6 SGLRALVTGAGKGIGRDTVKALHASGA-------KVVAVTRTN--SDLVSLAKECPGIE-PVCVDLGDWDATEKALGGIG 75 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhccCCC-cEEecCCCHHHHHHHHHHcC
Confidence 457999999999999999999999987 899999863 23322211111000 00112222223334443
Q ss_pred CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEEcCcchhhHHHHHHHCCCCCCC
Q 020875 81 GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILKEFAPSIPAK 151 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~snP~~~~~~~~~~~~~~~~~~ 151 (320)
..|+||+.||...... .+ ....+..|+.....+.+.+.+.. ....++|++|+.... .+.|..
T Consensus 76 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~~ 146 (244)
T 1cyd_A 76 PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAH---------VTFPNL 146 (244)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT---------SCCTTB
T ss_pred CCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhc---------CCCCCc
Confidence 5799999999653211 12 33467788888766666655431 124678888764321 123333
Q ss_pred cEEEeehhhHHHHHHHHHHHcC
Q 020875 152 NITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
..|+.++.....+-..+++.++
T Consensus 147 ~~Y~~sK~a~~~~~~~~a~~~~ 168 (244)
T 1cyd_A 147 ITYSSTKGAMTMLTKAMAMELG 168 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHG
T ss_pred chhHHHHHHHHHHHHHHHHHhh
Confidence 3567777666677777777764
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-08 Score=86.32 Aligned_cols=149 Identities=12% Similarity=0.074 Sum_probs=93.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH----HHHHHhcccCCCCcceEEeCChhhh--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG----VKMELVDAAFPLLKGVVATTDAVEA-- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~----~~~dl~~~~~~~~~~v~~~~~~~~a-- 78 (320)
.++++||||+|++|.+++..|+++|. +|++.++++. ++.. ...|+.+. .+..++
T Consensus 3 ~k~vlITGas~gIG~~~a~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~D~~~~-----------~~~~~~~~ 62 (236)
T 1ooe_A 3 SGKVIVYGGKGALGSAILEFFKKNGY-------TVLNIDLSAN--DQADSNILVDGNKNWT-----------EQEQSILE 62 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSCC--TTSSEEEECCTTSCHH-----------HHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEecCcc--ccccccEEEeCCCCCH-----------HHHHHHHH
Confidence 35899999999999999999999987 8999998752 2211 11222221 122222
Q ss_pred -----c--CCCcEEEEeCCCCCCC----CC---CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 79 -----C--TGVNIAVMVGGFPRKE----GM---ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 79 -----l--~~aDvVi~~ag~~~~~----~~---~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+ .+.|+||+.||..... .. +....+..|+.....+.+.+.++-.+.+++|++|+....
T Consensus 63 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-------- 134 (236)
T 1ooe_A 63 QTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM-------- 134 (236)
T ss_dssp HHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG--------
T ss_pred HHHHHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhc--------
Confidence 2 4789999999974311 11 124567789888888888777653123577888764422
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.|..-.|+.++.....+-+.+++.++..+..|+..
T Consensus 135 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~ 171 (236)
T 1ooe_A 135 -GPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVL 171 (236)
T ss_dssp -SCCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEE
T ss_pred -cCCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEE
Confidence 1233333466666656667777777765335667643
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=82.70 Aligned_cols=156 Identities=14% Similarity=0.099 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh----
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA---- 78 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a---- 78 (320)
.+.++++||||+|++|.+++..|++.|. +|++.|++++ + +....++.. .....++....+..++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~-~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~ 71 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGA-------LVALCDLRPE--G-KEVAEAIGG--AFFQVDLEDERERVRFVEEA 71 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSTT--H-HHHHHHHTC--EEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChh--H-HHHHHHhhC--CEEEeeCCCHHHHHHHHHHH
Confidence 3457899999999999999999999987 8999998753 2 222222211 0001111111122222
Q ss_pred ---cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 79 ---CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 79 ---l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+...|++|+.||..... ..+ ..+.+..|+.....+.+.+.++- ....++|++|+-... .+
T Consensus 72 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~---------~~ 142 (256)
T 2d1y_A 72 AYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL---------FA 142 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT---------SB
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcccccc---------CC
Confidence 34789999999975321 112 34567788887777766554321 123678888764321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|..-.|+.++.....+-+.+++.++ +..|+.
T Consensus 143 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 174 (256)
T 2d1y_A 143 EQENAAYNASKGGLVNLTRSLALDLA--PLRIRV 174 (256)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 23223466666666667777777765 345663
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.63 E-value=5.9e-08 Score=86.76 Aligned_cols=162 Identities=15% Similarity=0.226 Sum_probs=94.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-----CCcceEEeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-----~~~~v~~~~~~~~al 79 (320)
.++|+||||+|++|.+++..|++.|. +|++++++. ++++....++...... ...++....+..+++
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 102 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQGL-------KVVGCARTV--GNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMF 102 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCh--HHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHH
Confidence 35899999999999999999999987 899999863 3333333333221100 011221111222222
Q ss_pred -------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 80 -------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
.+.|+||+.||...... .+ ....+..|+.. ++.+++.+++...+..++|++|+.....
T Consensus 103 ~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~----- 177 (279)
T 1xg5_A 103 SAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR----- 177 (279)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS-----
T ss_pred HHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcc-----
Confidence 37999999998753211 12 34467788877 7777888877641236788887643210
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
....+....|+.++.....+...+++.+...+..|+..
T Consensus 178 --~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~ 215 (279)
T 1xg5_A 178 --VLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRAT 215 (279)
T ss_dssp --CCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred --cCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 01112212456665555566666777765334566643
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=84.47 Aligned_cols=156 Identities=13% Similarity=0.085 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCC---CCcceEEeCChhhh
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP---LLKGVVATTDAVEA 78 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~---~~~~v~~~~~~~~a 78 (320)
.+.++++||||+|++|.+++..|+++|. +|++.++++ ++++....++... ... ...++....+..++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 75 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-------HIVLVARQV--DRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAV 75 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 3457899999999999999999999987 899999864 3333333333211 100 01122211122233
Q ss_pred c-------CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHH
Q 020875 79 C-------TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 79 l-------~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
+ .+.|++|+.||..... ..+ ....+..|+.....+.+.+ ++.. ..++|++|+....
T Consensus 76 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~----- 148 (263)
T 3ai3_A 76 VESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG--GGAIIHNASICAV----- 148 (263)
T ss_dssp HHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhc-----
Confidence 3 3799999999975321 112 2345677777666555554 3332 3678888764321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|..-.|+.++.....+-+.+++.+. +..|+
T Consensus 149 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~ 181 (263)
T 3ai3_A 149 ----QPLWYEPIYNVTKAALMMFSKTLATEVI--KDNIR 181 (263)
T ss_dssp ----SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHHhh--hcCcE
Confidence 1223323466666666666677777653 34455
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=85.21 Aligned_cols=161 Identities=17% Similarity=0.146 Sum_probs=94.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh--
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-- 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-- 78 (320)
|..+.++++||||+|.+|.+++..|++.|. .|++.|+++ +.++....++.........++....+..++
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 93 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGA-------YVVVADVNE--DAAVRVANEIGSKAFGVRVDVSSAKDAESMVE 93 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceEEEEecCCCHHHHHHHHH
Confidence 344557899999999999999999999987 899999864 333332222211100011122221122222
Q ss_pred -----cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHHHHC
Q 020875 79 -----CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~~~~ 145 (320)
+...|++|+.||..... ..+ ....+..|+.....+.+.+..+-. ..+++|++|+....
T Consensus 94 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~--------- 164 (277)
T 4dqx_A 94 KTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTAT--------- 164 (277)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGT---------
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhC---------
Confidence 23789999999975321 122 334667888776655555533210 24678888864421
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+-+.+|+.++ +..|+.
T Consensus 165 ~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 198 (277)
T 4dqx_A 165 SAIADRTAYVASKGAISSLTRAMAMDHA--KEGIRV 198 (277)
T ss_dssp SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 2333333567776666677777887765 345653
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.4e-08 Score=85.92 Aligned_cols=146 Identities=15% Similarity=0.041 Sum_probs=88.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC-----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT----- 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~----- 80 (320)
++|+||||+|++|.+++..|+++|. +|+++++++..+.+.....|+.+.. +..++++
T Consensus 3 k~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~~~~~~~~~~~D~~~~~-----------~~~~~~~~~~~~ 64 (242)
T 1uay_A 3 RSALVTGGASGLGRAAALALKARGY-------RVVVLDLRREGEDLIYVEGDVTREE-----------DVRRAVARAQEE 64 (242)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEESSCCSSSSEEEECCTTCHH-----------HHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEccCccccceEEEeCCCCCHH-----------HHHHHHHHHHhh
Confidence 5899999999999999999999987 8999998742111111122333221 2333333
Q ss_pred -CCcEEEEeCCCCCCCC------C----CHHHHHHhhHHHHHHHHHHHhhhcCC--------CeEEEEEcCcchhhHHHH
Q 020875 81 -GVNIAVMVGGFPRKEG------M----ERKDVMSKNVSIYKAQASALEQHAAP--------NCKVLVVANPANTNALIL 141 (320)
Q Consensus 81 -~aDvVi~~ag~~~~~~------~----~r~~~~~~n~~~~~~i~~~i~~~~~~--------~~~viv~snP~~~~~~~~ 141 (320)
+.|++|+.||...... . +..+.+..|+.....+.+.+.+.... ..++|++|+....
T Consensus 65 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~----- 139 (242)
T 1uay_A 65 APLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAF----- 139 (242)
T ss_dssp SCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHH-----
T ss_pred CCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc-----
Confidence 7899999998753211 1 23456778888887777776654211 1377777754321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+....|+.++.....+-..+++.+. +..|+
T Consensus 140 ----~~~~~~~~Y~~sK~a~~~~~~~l~~e~~--~~gi~ 172 (242)
T 1uay_A 140 ----EGQIGQAAYAASKGGVVALTLPAARELA--GWGIR 172 (242)
T ss_dssp ----HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred ----cCCCCCchhhHHHHHHHHHHHHHHHHHh--hcCcE
Confidence 1223333466666655566666776653 23455
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3.4e-08 Score=88.96 Aligned_cols=154 Identities=12% Similarity=0.048 Sum_probs=88.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC-cCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~~a 82 (320)
+++|+||||+|++|++++..|+..| + +|++++++++. ... ..+...... ...++....++.++++++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-------~V~~~~R~~~~--~~~--~~l~~~~~~~~~~D~~d~~~l~~~~~~~ 73 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF-------KVRVVTRNPRK--KAA--KELRLQGAEVVQGDQDDQVIMELALNGA 73 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS-------EEEEEESCTTS--HHH--HHHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc-------eEEEEEcCCCC--HHH--HHHHHCCCEEEEecCCCHHHHHHHHhcC
Confidence 5799999999999999999999877 6 89999987532 211 112111100 112232233567789999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHH
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 162 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~ 162 (320)
|+||++++..... ....|+...+++++.+++.+ . .++|. ++..... ....+.+ ...++.++....
T Consensus 74 d~vi~~a~~~~~~------~~~~~~~~~~~~~~aa~~~g-v-~~iv~-~S~~~~~-----~~~~~~~-~~~y~~sK~~~e 138 (299)
T 2wm3_A 74 YATFIVTNYWESC------SQEQEVKQGKLLADLARRLG-L-HYVVY-SGLENIK-----KLTAGRL-AAAHFDGKGEVE 138 (299)
T ss_dssp SEEEECCCHHHHT------CHHHHHHHHHHHHHHHHHHT-C-SEEEE-CCCCCHH-----HHTTTSC-CCHHHHHHHHHH
T ss_pred CEEEEeCCCCccc------cchHHHHHHHHHHHHHHHcC-C-CEEEE-EcCcccc-----ccCCCcc-cCchhhHHHHHH
Confidence 9999998742111 12456778899999998875 2 24555 4333221 1111111 111222222222
Q ss_pred HHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 163 RALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 163 r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
+ +.+..|++..-++...++|+.
T Consensus 139 ~----~~~~~gi~~~ilrp~~~~~~~ 160 (299)
T 2wm3_A 139 E----YFRDIGVPMTSVRLPCYFENL 160 (299)
T ss_dssp H----HHHHHTCCEEEEECCEEGGGG
T ss_pred H----HHHHCCCCEEEEeecHHhhhc
Confidence 2 223458877777766666753
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.1e-07 Score=85.35 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc----cCCCCcceEEeCChh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA----AFPLLKGVVATTDAV 76 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~----~~~~~~~v~~~~~~~ 76 (320)
|++.+|||+|+| +|.+|++++..|.+.|+ +|.++|+++ ++++.....-... ...+..++..+++..
T Consensus 25 m~~~~mkI~VIG-aG~mG~alA~~La~~G~-------~V~l~~r~~--~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ 94 (356)
T 3k96_A 25 MEPFKHPIAILG-AGSWGTALALVLARKGQ-------KVRLWSYES--DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLK 94 (356)
T ss_dssp --CCCSCEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSCH--HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHH
T ss_pred ccccCCeEEEEC-ccHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHcCCCcccCCCCccCCCeEEECCHH
Confidence 566678999999 59999999999999887 799999863 3333222111000 011234577888888
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
++++++|+||++. |. ..++++++.+..+.+++..+|.++|.++
T Consensus 95 ea~~~aDvVilaV--p~--------------~~~~~vl~~i~~~l~~~~ivvs~~kGi~ 137 (356)
T 3k96_A 95 ASLEGVTDILIVV--PS--------------FAFHEVITRMKPLIDAKTRIAWGTKGLA 137 (356)
T ss_dssp HHHTTCCEEEECC--CH--------------HHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred HHHhcCCEEEECC--CH--------------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 8999999999974 21 2456777788777656777777777554
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-07 Score=83.29 Aligned_cols=157 Identities=15% Similarity=0.062 Sum_probs=91.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--CCCCcceEEeCChhhhc--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FPLLKGVVATTDAVEAC-- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~~~~~~v~~~~~~~~al-- 79 (320)
+.++|+||||+|++|.+++..|+++|. +|++.+++. +.......++.... .....++....+..+++
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 85 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYGA-------KVVIADIAD--DHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDT 85 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCh--hHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHH
Confidence 446899999999999999999999987 899999863 22322222232110 00011222112233333
Q ss_pred -----CCCcEEEEeCCCCCCC-----CCC---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHHHH
Q 020875 80 -----TGVNIAVMVGGFPRKE-----GME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~-----~~~---r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~~~ 144 (320)
.+.|+||+.||..... ..+ ..+.+..|+.....+.+.+.+.-. ...++|++|+....
T Consensus 86 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~-------- 157 (278)
T 2bgk_A 86 TIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSF-------- 157 (278)
T ss_dssp HHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGT--------
T ss_pred HHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeecccc--------
Confidence 3799999999875311 112 345677888877777776655410 24678888764321
Q ss_pred CCCCC-CCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 145 APSIP-AKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 145 ~~~~~-~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+ ....|+.++.....+-..+++.+. +..|+
T Consensus 158 -~~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~ 191 (278)
T 2bgk_A 158 -TAGEGVSHVYTATKHAVLGLTTSLCTELG--EYGIR 191 (278)
T ss_dssp -CCCTTSCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred -CCCCCCCcchHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence 1222 222466666666666666776653 23455
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.4e-08 Score=84.96 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=88.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC---
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--- 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--- 80 (320)
+.++++||||+|++|.+++..|++.|. +|++.|+++ ++++....++.........++....+..++++
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~ 81 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAGA-------TVAIADLDV--MAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAI 81 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 346899999999999999999999987 899999863 33332222221100001112222222333333
Q ss_pred ----CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 81 ----GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 81 ----~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+.|+||+.||...... .+ ....+..|+.....+.+.+.++ .....++|++|+.... .+
T Consensus 82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~ 152 (263)
T 3ak4_A 82 DALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAK---------VG 152 (263)
T ss_dssp HHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT---------SC
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccc---------cC
Confidence 7999999999753211 12 3346677877666665555432 1113677777754321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.|....|+.++.....+-+.+++.+.
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~la~e~~ 178 (263)
T 3ak4_A 153 APLLAHYSASKFAVFGWTQALAREMA 178 (263)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 33333466666666666667777663
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.1e-08 Score=84.52 Aligned_cols=161 Identities=20% Similarity=0.203 Sum_probs=93.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC- 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al- 79 (320)
|+.+.++++||||+|.+|.+++..|+++|. +|++.|+++ ++++....++.........++....+..+++
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGA-------KVVIVDRDK--AGAERVAGEIGDAALAVAADISKEADVDAAVE 75 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhCCceEEEEecCCCHHHHHHHHH
Confidence 555667999999999999999999999987 899999874 3444333333211101111222111222223
Q ss_pred ------CCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHH----HHHhhhc--CCCeEEEEEcCcchhhHHH
Q 020875 80 ------TGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQA----SALEQHA--APNCKVLVVANPANTNALI 140 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~----~~i~~~~--~~~~~viv~snP~~~~~~~ 140 (320)
...|++|+.||...... .+ ....+..|+.....+. +.+.+.. ...+++|++|+....
T Consensus 76 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~---- 151 (261)
T 3n74_A 76 AALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAG---- 151 (261)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTT----
T ss_pred HHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhc----
Confidence 37899999999754211 12 2335667766644444 4444432 014567777764321
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 152 -----~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 185 (261)
T 3n74_A 152 -----RPRPNLAWYNATKGWVVSVTKALAIELA--PAKIRV 185 (261)
T ss_dssp -----SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -----CCCCCccHHHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 1233222467776666677777887764 345663
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=82.78 Aligned_cols=160 Identities=8% Similarity=0.004 Sum_probs=90.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCChhhhc--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEAC-- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~al-- 79 (320)
+.++|+||||+|++|.+++..|++.|. +|++.+++. +.++....++..... ....++....+..+++
T Consensus 5 ~~k~vlVtGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (251)
T 1zk4_A 5 DGKVAIITGGTLGIGLAIATKFVEEGA-------KVMITGRHS--DVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDA 75 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999999987 899999863 333322222221100 0011111111222222
Q ss_pred -----CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 -----TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|+||+.||..... ..+ ....+..|+.... .+++.+++.. ...++|++|+....
T Consensus 76 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~~~-------- 146 (251)
T 1zk4_A 76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKG-LGASIINMSSIEGF-------- 146 (251)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEEECCGGGT--------
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCCEEEEeCCchhc--------
Confidence 3589999999875321 112 2446778877444 4455554432 22577777764321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.|..-.|+.++.....+-..++..+...+..|+..
T Consensus 147 -~~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~ 183 (251)
T 1zk4_A 147 -VGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVN 183 (251)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred -cCCCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEE
Confidence 1223323456665555566666666655445566643
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.9e-07 Score=80.89 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=95.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al---- 79 (320)
+.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++.........++....+..+.+
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 75 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGA-------TVIVSDINA--EGAKAAAASIGKKARAIAADISDPGSVKALFAEIQ 75 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999997 899999864 3444333333111111112222222222332
Q ss_pred ---CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 80 ---TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 80 ---~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
...|++|+.||...... .+ ....+..|+.....+.+. +++.. ...++|++|+.... .
T Consensus 76 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~---------~ 145 (247)
T 3rwb_A 76 ALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAG-KAGRVISIASNTFF---------A 145 (247)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCTHHH---------H
T ss_pred HHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCcEEEEECchhhc---------c
Confidence 37899999999753211 12 334677887776666555 66554 35778888764321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.|..-.|+.++.....+-+.+|+.++ +..|+.
T Consensus 146 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 178 (247)
T 3rwb_A 146 GTPNMAAYVAAKGGVIGFTRALATELG--KYNITA 178 (247)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 233333566666666677777777764 445663
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-07 Score=82.26 Aligned_cols=158 Identities=16% Similarity=0.121 Sum_probs=92.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA------ 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (320)
+++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++.........++....+..++
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 73 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGH-------QVSMMGRRY--QRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVE 73 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999987 899999874 344433333321110011122111122222
Q ss_pred -cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcchhhHHHHHHHCCCCCC
Q 020875 79 -CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALILKEFAPSIPA 150 (320)
Q Consensus 79 -l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~~~~~~~~~~~~~~~~ 150 (320)
+...|++|+.||..... ..+ ....+..|+.....+.+.+...-. ...++|++|+.... .+.|.
T Consensus 74 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~---------~~~~~ 144 (235)
T 3l6e_A 74 WGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQ---------VGKAN 144 (235)
T ss_dssp HHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECC---------SSCSS
T ss_pred hcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhc---------CCCCC
Confidence 33679999999974321 112 345678888887666666544321 22477777764421 12222
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.-.|+.++.-...+-+.+++.++ +..|+..
T Consensus 145 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~ 174 (235)
T 3l6e_A 145 ESLYCASKWGMRGFLESLRAELK--DSPLRLV 174 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--TSSEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHhh--ccCCEEE
Confidence 22456666666677777888765 4556643
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-07 Score=82.63 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=90.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-----CCCcceEEe-CC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-----PLLKGVVAT-TD 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-----~~~~~v~~~-~~ 74 (320)
|+.+.++++||||+|++|.+++..|+++|.. .|++.+++++.+.++ ++..... ....++... .+
T Consensus 1 m~l~~k~vlVtGas~gIG~~~a~~l~~~G~~------~v~~~~r~~~~~~~~----~l~~~~~~~~~~~~~~D~~~~~~~ 70 (254)
T 1sby_A 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLK------NFVILDRVENPTALA----ELKAINPKVNITFHTYDVTVPVAE 70 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCCS------EEEEEESSCCHHHHH----HHHHHCTTSEEEEEECCTTSCHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCc------EEEEEecCchHHHHH----HHHHhCCCceEEEEEEecCCChHH
Confidence 6677789999999999999999999999861 388899875322222 2221100 001112111 11
Q ss_pred hhhh-------cCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcC-----CCeEEEEEcCcchhhHHHHH
Q 020875 75 AVEA-------CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA-----PNCKVLVVANPANTNALILK 142 (320)
Q Consensus 75 ~~~a-------l~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~-----~~~~viv~snP~~~~~~~~~ 142 (320)
..++ +.+.|++|+.||... ..+..+.+..|+.....+.+.+.+.-. +.+++|++|+....
T Consensus 71 ~~~~~~~~~~~~g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~------ 142 (254)
T 1sby_A 71 SKKLLKKIFDQLKTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF------ 142 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT------
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhc------
Confidence 1222 237899999999753 344566788888887777766654321 13678888765421
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.+.+..-.|+.++.....+-..+++.+
T Consensus 143 ---~~~~~~~~Y~~sK~a~~~~~~~la~~~ 169 (254)
T 1sby_A 143 ---NAIHQVPVYSASKAAVVSFTNSLAKLA 169 (254)
T ss_dssp ---SCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 122322245666555556666666653
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-08 Score=88.77 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=70.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc--CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~--~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~a 82 (320)
|||+||||+|++|++++..|+.. |+ +|++++++. +++.. +.+... ....++....++.++++++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~--~~~~~----l~~~~~~~~~~D~~d~~~l~~~~~~~ 67 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPAS-------QIIAIVRNV--EKAST----LADQGVEVRHGDYNQPESLQKAFAGV 67 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGG-------GEEEEESCT--TTTHH----HHHTTCEEEECCTTCHHHHHHHTTTC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCC-------eEEEEEcCH--HHHhH----HhhcCCeEEEeccCCHHHHHHHHhcC
Confidence 57999999999999999999987 76 789999864 22221 111110 0112222223567788999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
|+|||+|+... .. ..|+....++++.+++.+ . .++|++|.
T Consensus 68 d~vi~~a~~~~----~~----~~n~~~~~~l~~a~~~~~-~-~~~v~~Ss 107 (287)
T 2jl1_A 68 SKLLFISGPHY----DN----TLLIVQHANVVKAARDAG-V-KHIAYTGY 107 (287)
T ss_dssp SEEEECCCCCS----CH----HHHHHHHHHHHHHHHHTT-C-SEEEEEEE
T ss_pred CEEEEcCCCCc----Cc----hHHHHHHHHHHHHHHHcC-C-CEEEEECC
Confidence 99999998531 11 458889999999998865 2 35666664
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-07 Score=82.84 Aligned_cols=154 Identities=13% Similarity=0.116 Sum_probs=92.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhcC-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEACT- 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al~- 80 (320)
.++++||||+|++|.+++..|++.|. +|++.+++++ +....++...... ...++....+..++++
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~~----~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~ 72 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGA-------NIVLNGFGDP----APALAEIARHGVKAVHHPADLSDVAQIEALFAL 72 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEECSSCC----HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCch----HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999999987 8999998753 1112223221100 1112222222333443
Q ss_pred ------CCcEEEEeCCCCCCCC---CC---HHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 81 ------GVNIAVMVGGFPRKEG---ME---RKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 81 ------~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+.|++|+.||...... .+ ....+..|+. .++.+++.+++.. ..++|++|+....
T Consensus 73 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-------- 142 (255)
T 2q2v_A 73 AEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN--WGRIINIASVHGL-------- 142 (255)
T ss_dssp HHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGT--------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcCchhc--------
Confidence 7999999999753211 12 3346777877 5555666666543 3678888764321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.|..-.|+.++.....+-+.+++.+. +..|+..
T Consensus 143 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~ 177 (255)
T 2q2v_A 143 -VGSTGKAAYVAAKHGVVGLTKVVGLETA--TSNVTCN 177 (255)
T ss_dssp -SCCTTBHHHHHHHHHHHHHHHHHHHHTT--TSSEEEE
T ss_pred -cCCCCchhHHHHHHHHHHHHHHHHHHhc--ccCcEEE
Confidence 1233323466666666677777888765 4566643
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=84.27 Aligned_cols=155 Identities=13% Similarity=0.136 Sum_probs=94.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al---- 79 (320)
+.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++.........+++...+..+++
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAGA-------RVVLADLPE--TDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTI 80 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECTT--SCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHH
Confidence 346899999999999999999999987 899999875 3344333333111101111222222223333
Q ss_pred ---CCCcEEEEeCCCCCC-C----CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 ---TGVNIAVMVGGFPRK-E----GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 ---~~aDvVi~~ag~~~~-~----~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|++|+.||.... . ..+ ....+..|+.....+.+.+ ++. ...++|++|+....
T Consensus 81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS~~~~-------- 150 (271)
T 3tzq_B 81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA--GGGAIVNISSATAH-------- 150 (271)
T ss_dssp HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECCGGGT--------
T ss_pred HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEECCHHHc--------
Confidence 378999999997522 1 112 3456778888777776666 443 34678888764321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+..-.|+.++.-...+-+.+|+.+. +..|+
T Consensus 151 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~ 183 (271)
T 3tzq_B 151 -AAYDMSTAYACTKAAIETLTRYVATQYG--RHGVR 183 (271)
T ss_dssp -SBCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred -CCCCCChHHHHHHHHHHHHHHHHHHHHh--hcCEE
Confidence 1233333466666666677777777764 33455
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.3e-08 Score=85.25 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=88.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchh--HHHHHHHhcccCCCCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEAL--NGVKMELVDAAFPLLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~--~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (320)
|+.+.++++||||+|.+|.+++..|++.|. +|++.++++..+.. .....|+.+. .+..++
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~D~~d~-----------~~~~~~ 64 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGA-------KVTGFDQAFTQEQYPFATEVMDVADA-----------AQVAQV 64 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCCCSSCCSSEEEECCTTCH-----------HHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCchhhhcCCceEEEcCCCCH-----------HHHHHH
Confidence 555667999999999999999999999987 89999986421100 0011222221 122222
Q ss_pred -------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHH
Q 020875 79 -------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 79 -------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
+...|++|+.||..... ..+ ..+.+..|+.....+.+.+ ++.. ..++|++|+....
T Consensus 65 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~----- 137 (250)
T 2fwm_X 65 CQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR--GGAIVTVASDAAH----- 137 (250)
T ss_dssp HHHHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT-----
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC--CCEEEEECchhhC-----
Confidence 34789999999975321 112 3446778877766666655 4443 3577888764321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|..-.|+.++.....+-+.+++.+.
T Consensus 138 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 165 (250)
T 2fwm_X 138 ----TPRIGMSAYGASKAALKSLALSVGLELA 165 (250)
T ss_dssp ----SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ----CCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 1233333466666666677777777763
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=98.60 E-value=7.4e-08 Score=84.78 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=94.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA----- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (320)
+.++++||||+|.+|.+++..|++.|. +|++.|+++ +.++.....+.........++....+..++
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 78 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGA-------KVIGTATSE--SGAQAISDYLGDNGKGMALNVTNPESIEAVLKAIT 78 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHH
Confidence 346899999999999999999999997 899999874 334333333322111111122222222222
Q ss_pred --cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 --CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 --l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+. +. ..+++|++|+.... .
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~iv~isS~~~~-------~-- 147 (248)
T 3op4_A 79 DEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK--RQGRIINVGSVVGT-------M-- 147 (248)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCHHHH-------H--
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcchhhc-------C--
Confidence 337899999999754221 12 33467788777666666543 33 24678888764321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.|..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 148 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~v 180 (248)
T 3op4_A 148 GNAGQANYAAAKAGVIGFTKSMAREVA--SRGVTV 180 (248)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHH--HhCeEE
Confidence 233333567776666677777887765 345653
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-07 Score=81.80 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-- 80 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~-- 80 (320)
.+.++|+||||+|++|.+++..|++.|. +|+++++++ ++++....++.... ....++....+..++++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~ 74 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-------RVVAVSRTQ--ADLDSLVRECPGIE-PVCVDLGDWEATERALGSV 74 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTC
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcCCCC-EEEEeCCCHHHHHHHHHHc
Confidence 3457899999999999999999999987 899999863 33332221111100 00112221122333343
Q ss_pred -CCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCcchhhHHHHHHHCCCCCC
Q 020875 81 -GVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEFAPSIPA 150 (320)
Q Consensus 81 -~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP~~~~~~~~~~~~~~~~~ 150 (320)
..|+||+.||...... . .....+..|+.....+.+.+.+. .....++|++|+.... .+.+.
T Consensus 75 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~---------~~~~~ 145 (244)
T 3d3w_A 75 GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQ---------RAVTN 145 (244)
T ss_dssp CCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT---------SCCTT
T ss_pred CCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhc---------cCCCC
Confidence 5899999998753211 1 23456778888766666655543 1124678888865421 12333
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|+.++.....+-..+++.++ +..++.
T Consensus 146 ~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v 174 (244)
T 3d3w_A 146 HSVYCSTKGALDMLTKVMALELG--PHKIRV 174 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 33567777777777777777764 234553
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=5.4e-08 Score=90.25 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=88.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-c-CCCCcc-eEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-A-FPLLKG-VVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~-~~~~~~-v~~~~~~~~ 77 (320)
|++++|||+||||+|++|++++..|+.+|+ +|++++++.+. .. ..++.+. . .....+ +....++.+
T Consensus 1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~--~~--~~~l~~~~~v~~v~~D~l~d~~~l~~ 69 (352)
T 1xgk_A 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGH-------HVRAQVHSLKG--LI--AEELQAIPNVTLFQGPLLNNVPLMDT 69 (352)
T ss_dssp --CCCCCEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCSCS--HH--HHHHHTSTTEEEEESCCTTCHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEECCCCh--hh--HHHHhhcCCcEEEECCccCCHHHHHH
Confidence 666678999999999999999999998886 78888886532 21 1122211 0 001122 222234677
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEee
Q 020875 78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t 157 (320)
+++++|+|||.++... . ..|... +++++.+++.+ .-.++|.+|..... .+ .. ++...++.+
T Consensus 70 ~~~~~d~Vi~~a~~~~---~------~~~~~~-~~l~~aa~~~g-~v~~~V~~SS~~~~------~~-~~-~~~~~y~~s 130 (352)
T 1xgk_A 70 LFEGAHLAFINTTSQA---G------DEIAIG-KDLADAAKRAG-TIQHYIYSSMPDHS------LY-GP-WPAVPMWAP 130 (352)
T ss_dssp HHTTCSEEEECCCSTT---S------CHHHHH-HHHHHHHHHHS-CCSEEEEEECCCGG------GT-SS-CCCCTTTHH
T ss_pred HHhcCCEEEEcCCCCC---c------HHHHHH-HHHHHHHHHcC-CccEEEEeCCcccc------cc-CC-CCCccHHHH
Confidence 8899999999876431 1 224444 88888888764 11367777754310 11 11 111223444
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
+....+ +.+.++++..-++.- ++|..
T Consensus 131 K~~~E~----~~~~~gi~~~ivrpg-~~g~~ 156 (352)
T 1xgk_A 131 KFTVEN----YVRQLGLPSTFVYAG-IYNNN 156 (352)
T ss_dssp HHHHHH----HHHTSSSCEEEEEEC-EEGGG
T ss_pred HHHHHH----HHHHcCCCEEEEecc-eecCC
Confidence 443333 334458887778844 57854
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-07 Score=82.28 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=92.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--CCCCcceEEeCChhhh-
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FPLLKGVVATTDAVEA- 78 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~~~~~~v~~~~~~~~a- 78 (320)
+.+.++++||||+|++|.+++..|++.|. +|++.|+++ ++++....++.... .....++....+..++
T Consensus 26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~ 96 (276)
T 2b4q_A 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGA-------RVFICARDA--EACADTATRLSAYGDCQAIPADLSSEAGARRLA 96 (276)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHH
Confidence 33456899999999999999999999986 899999864 33433333332211 0011122211122222
Q ss_pred ------cCCCcEEEEeCCCCCCC---C---CCHHHHHHhhHHHHHHH----HHHHhhhcC--CCeEEEEEcCcchhhHHH
Q 020875 79 ------CTGVNIAVMVGGFPRKE---G---MERKDVMSKNVSIYKAQ----ASALEQHAA--PNCKVLVVANPANTNALI 140 (320)
Q Consensus 79 ------l~~aDvVi~~ag~~~~~---~---~~r~~~~~~n~~~~~~i----~~~i~~~~~--~~~~viv~snP~~~~~~~ 140 (320)
+...|++|+.||..... . ++....+..|+.....+ ++.+++... ...++|++|+....
T Consensus 97 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~---- 172 (276)
T 2b4q_A 97 QALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGI---- 172 (276)
T ss_dssp HHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGT----
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHc----
Confidence 33789999999975321 1 12345677887776444 444444431 01678888764321
Q ss_pred HHHHCCCCCCCc-EEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 141 LKEFAPSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 141 ~~~~~~~~~~~~-i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..- .|+.++.....+-+.+++.+. +..|+.
T Consensus 173 -----~~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gI~v 207 (276)
T 2b4q_A 173 -----SAMGEQAYAYGPSKAALHQLSRMLAKELV--GEHINV 207 (276)
T ss_dssp -----CCCCCSCTTHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -----CCCCCCccccHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1233333 466666666677777777764 345663
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-07 Score=82.00 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=74.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc----CC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC----TG 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al----~~ 81 (320)
++|+||||+|++|.+++..|++.|. +|++.++++..... ....|+.+.. +..+++ ..
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~~~~~~-~~~~Dl~~~~-----------~v~~~~~~~~~~ 62 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGH-------QIVGIDIRDAEVIA-DLSTAEGRKQ-----------AIADVLAKCSKG 62 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSSSSEEC-CTTSHHHHHH-----------HHHHHHTTCTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCchhhcc-ccccCCCCHH-----------HHHHHHHHhCCC
Confidence 4799999999999999999999987 89999987532111 1334665543 233333 45
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcch
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPAN 135 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~ 135 (320)
.|++|+.||.... .....+.+..|+.....+.+.+.+.- ....++|++|+...
T Consensus 63 id~lv~~Ag~~~~-~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~ 117 (257)
T 1fjh_A 63 MDGLVLCAGLGPQ-TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVAS 117 (257)
T ss_dssp CSEEEECCCCCTT-CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred CCEEEECCCCCCC-cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhh
Confidence 6999999997541 22356778888887777776665431 12367888886543
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.4e-08 Score=85.71 Aligned_cols=152 Identities=16% Similarity=0.092 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA 78 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a 78 (320)
+.+.++|+||||+|++|.+++..|++.|. +|+++++++ ++++....++...... ...++....+..++
T Consensus 11 ~l~~k~vlITGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 81 (266)
T 1xq1_A 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA-------VIHTCARNE--YELNECLSKWQKKGFQVTGSVCDASLRPEREKL 81 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHH
Confidence 34457899999999999999999999987 899999863 3333333333221100 01111111122222
Q ss_pred c--------CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHH
Q 020875 79 C--------TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 79 l--------~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~ 140 (320)
+ ...|+||+.||..... ..+ ..+.+..|+.....+.+.+ ++.. ..++|++|+.....
T Consensus 82 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~--- 156 (266)
T 1xq1_A 82 MQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVV--- 156 (266)
T ss_dssp HHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC---------
T ss_pred HHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEccchhcc---
Confidence 2 5789999999974321 112 3346778888877777666 4432 35778887643211
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
+.+....|+.++.....+-..+++.+.
T Consensus 157 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~ 183 (266)
T 1xq1_A 157 ------SASVGSIYSATKGALNQLARNLACEWA 183 (266)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHG
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 122223456666666666677777763
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=82.84 Aligned_cols=156 Identities=14% Similarity=0.065 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al---- 79 (320)
+.++++||||+|.+|.+++..|++.|. +|++.++++ ++++....++.........++....+..+++
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGA-------RVVLADVLD--EEGAATARELGDAARYQHLDVTIEEDWQRVVAYAR 74 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHH
Confidence 346899999999999999999999987 899999863 3333222222100000011221111222333
Q ss_pred ---CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 80 ---TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 80 ---~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
...|++|+.||...... .+ ....+..|+.... .+++.+++.. ..++|++|+.... .
T Consensus 75 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~ 143 (254)
T 1hdc_A 75 EEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG--GGSIVNISSAAGL---------M 143 (254)
T ss_dssp HHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------S
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhc---------c
Confidence 37999999999753211 12 3345677776654 5666666553 3678888764321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.|....|+.++.....+-+.+++.++ +..|+.
T Consensus 144 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 176 (254)
T 1hdc_A 144 GLALTSSYGASKWGVRGLSKLAAVELG--TDRIRV 176 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 233333466666666666667777764 345553
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-07 Score=83.55 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=91.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh---cC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA---CT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a---l~ 80 (320)
+.++|+||||+|++|.+++..|++.|. +|++.++++ ++++....++.+.......++....+..+. +.
T Consensus 13 ~~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 83 (249)
T 3f9i_A 13 TGKTSLITGASSGIGSAIARLLHKLGS-------KVIISGSNE--EKLKSLGNALKDNYTIEVCNLANKEECSNLISKTS 83 (249)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcC
Confidence 457999999999999999999999986 899999863 344433333322110001111111122222 34
Q ss_pred CCcEEEEeCCCCCC------CCCCHHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCC
Q 020875 81 GVNIAVMVGGFPRK------EGMERKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (320)
Q Consensus 81 ~aDvVi~~ag~~~~------~~~~r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~ 150 (320)
..|++|+.||.... ...+....+..|+.....+.+.+ .+. ..+++|++|+.... .+.|.
T Consensus 84 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~~~---------~~~~~ 152 (249)
T 3f9i_A 84 NLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK--RYGRIINISSIVGI---------AGNPG 152 (249)
T ss_dssp CCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCCCC-----------CCSC
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEEccHHhc---------cCCCC
Confidence 78999999997532 11234567778877766665554 333 34678888865421 12333
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.-.|+.++.....+-..+++.+. +..|+.
T Consensus 153 ~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 181 (249)
T 3f9i_A 153 QANYCASKAGLIGMTKSLSYEVA--TRGITV 181 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CchhHHHHHHHHHHHHHHHHHHH--HcCcEE
Confidence 33567776666667777777764 345653
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=7e-08 Score=85.62 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=94.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~ 77 (320)
|+.+.++|+||||+|++|++++..|+++|. +|++.++.. .+.++....++...... ...++....+..+
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~-------~v~~~~r~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 88 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGA-------SVVVNYGSS-SKAAEEVVAELKKLGAQGVAIQADISKPSEVVA 88 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCc-hHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHH
Confidence 344557999999999999999999999986 788888732 23333333333221100 0112221122333
Q ss_pred hcC-------CCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 78 ACT-------GVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 78 al~-------~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+++ +.|+||+.||..... ..+ ..+.+..|+.....+.+.+.++..+..++|++|+....
T Consensus 89 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~-------- 160 (274)
T 1ja9_A 89 LFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAV-------- 160 (274)
T ss_dssp HHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGT--------
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhc--------
Confidence 333 789999999875321 112 24567889988888888877663122567777754321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
..+.+..-.|+.++.....+-..+++.++
T Consensus 161 ~~~~~~~~~Y~~sK~a~~~~~~~~~~e~~ 189 (274)
T 1ja9_A 161 MTGIPNHALYAGSKAAVEGFCRAFAVDCG 189 (274)
T ss_dssp CCSCCSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 01233333566676666677777777764
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.6e-08 Score=85.07 Aligned_cols=153 Identities=12% Similarity=0.032 Sum_probs=91.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA------ 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (320)
.++|+||||+|++|.+++..|+++|. +|++.++++. .+.+. ......++....+..++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~~~~~-------~~~~~~D~~~~~~v~~~~~~~~~ 70 (241)
T 1dhr_A 7 ARRVLVYGGRGALGSRCVQAFRARNW-------WVASIDVVEN--EEASA-------SVIVKMTDSFTEQADQVTAEVGK 70 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESSCC--TTSSE-------EEECCCCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-------EEEEEeCChh--hccCC-------cEEEEcCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999987 8999998752 22110 00011122111122222
Q ss_pred -c--CCCcEEEEeCCCCCCC----CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 79 -C--TGVNIAVMVGGFPRKE----GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 79 -l--~~aDvVi~~ag~~~~~----~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
+ .+.|++|+.||..... ..+ ....+..|+.....+.+.+.+.-.+.+++|++|+.... .+.
T Consensus 71 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~~ 141 (241)
T 1dhr_A 71 LLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL---------DGT 141 (241)
T ss_dssp HHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCC
T ss_pred HhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHc---------cCC
Confidence 2 3789999999974311 111 23467788888888877776653123577888764321 123
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+..-.|+.++.....+-+.+++.++..+..|+..
T Consensus 142 ~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~ 175 (241)
T 1dhr_A 142 PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAI 175 (241)
T ss_dssp TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEE
Confidence 3323456665555566666666665335566643
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.5e-07 Score=80.87 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=94.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
+.++++||||+|++|.+++..|++.|. +|++.++++ ++++....++...... ...++....+..+++
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGA-------SVYTCSRNQ--KELNDCLTQWRSKGFKVEASVCDLSSRSERQELMN 78 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 346899999999999999999999987 899999864 3333333333221100 011221111222222
Q ss_pred -------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhh--cCCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 -------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQH--AAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~--~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+..+ .....++|++|+....
T Consensus 79 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~-------- 150 (260)
T 2ae2_A 79 TVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGA-------- 150 (260)
T ss_dssp HHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGT--------
T ss_pred HHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc--------
Confidence 57999999999753211 12 3346778887777776665331 0124678888764321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 151 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 184 (260)
T 2ae2_A 151 -LAVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRV 184 (260)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE
T ss_pred -cCCCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1233333567777666677777887764 345653
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.9e-08 Score=83.52 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=85.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHH-hcccC---CCCcceEEeCChhhhcC-
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL-VDAAF---PLLKGVVATTDAVEACT- 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl-~~~~~---~~~~~v~~~~~~~~al~- 80 (320)
++++||||+|++|.+++..|++.|. +|++++++. ++++....++ ..... ....++....+..++++
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGD-------RVAALDLSA--ETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAA 73 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 5799999999999999999999986 899999863 3333222233 11000 00112211122333333
Q ss_pred ------CCcEEEEeCCCCCCCC------CC---HHHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 81 ------GVNIAVMVGGFPRKEG------ME---RKDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 81 ------~aDvVi~~ag~~~~~~------~~---r~~~~~~n~~~~~~----i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
+.|+||+.||...... .+ ....+..|+..... +.+.+++.. ..++|++|+....
T Consensus 74 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~----- 146 (250)
T 2cfc_A 74 TMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG--AGVIVNIASVASL----- 146 (250)
T ss_dssp HHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-----
T ss_pred HHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhc-----
Confidence 7999999998753211 12 23456677766644 444444443 3677877764321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.+.+....|+.++.....+-..+++.+
T Consensus 147 ----~~~~~~~~Y~~sK~a~~~~~~~l~~e~ 173 (250)
T 2cfc_A 147 ----VAFPGRSAYTTSKGAVLQLTKSVAVDY 173 (250)
T ss_dssp ----SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 123333356666666666666777766
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-07 Score=81.33 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=92.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC---
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV--- 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a--- 82 (320)
++|+||||+|.+|.+++..|++.|. +|++.++++ ++++....++.........++....+..+.++.+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 72 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGK-------ATYLTGRSE--SKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSI 72 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCH--HHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSC
T ss_pred CEEEEecCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhc
Confidence 4699999999999999999999986 799999864 3343322222111000111222222233333332
Q ss_pred -cEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCC-CeEEEEEcCcchhhHHHHHHHCCCCCCCcEE
Q 020875 83 -NIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAP-NCKVLVVANPANTNALILKEFAPSIPAKNIT 154 (320)
Q Consensus 83 -DvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~-~~~viv~snP~~~~~~~~~~~~~~~~~~~i~ 154 (320)
|++|+.||...... .+ ....+..|+.....+.+.+...-.. ...+|++|+.... .+.+..-.|
T Consensus 73 ~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~---------~~~~~~~~Y 143 (230)
T 3guy_A 73 PSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ---------QPKAQESTY 143 (230)
T ss_dssp CSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGT---------SCCTTCHHH
T ss_pred CCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccC---------CCCCCCchh
Confidence 99999999754211 12 3346778888777777766654211 2367777764321 223333356
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.++.....+-+.+++.++ +..|+.
T Consensus 144 ~asKaa~~~~~~~la~e~~--~~gi~v 168 (230)
T 3guy_A 144 CAVKWAVKGLIESVRLELK--GKPMKI 168 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTT--TSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHH--hcCeEE
Confidence 7777777778888888876 345553
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.3e-08 Score=90.28 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=64.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc--chhHHHHHHHhcccCC-CCcceEEeCChhhhcC-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFP-LLKGVVATTDAVEACT- 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~--~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~- 80 (320)
++||+||||+|++|++++..|++.|+ +|++++++.+. +++. ....+...... ...++....++.++++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~~~~~~~~-~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~ 81 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHR-------PTYILARPGPRSPSKAK-IFKALEDKGAIIVYGLINEQEAMEKILKE 81 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTC-------CEEEEECSSCCCHHHHH-HHHHHHHTTCEEEECCTTCHHHHHHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCC-------CEEEEECCCCCChhHHH-HHHHHHhCCcEEEEeecCCHHHHHHHHhh
Confidence 46899999999999999999999886 78889886421 2221 11122211111 1123333345677888
Q ss_pred -CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhc
Q 020875 81 -GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121 (320)
Q Consensus 81 -~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~ 121 (320)
++|+|||+++.. |+...+++++++++.+
T Consensus 82 ~~~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g 110 (346)
T 3i6i_A 82 HEIDIVVSTVGGE-------------SILDQIALVKAMKAVG 110 (346)
T ss_dssp TTCCEEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred CCCCEEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence 999999999752 5666788999998875
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-07 Score=82.47 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=95.5
Q ss_pred CCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc--cC-CCCcceEEeCChhhhc
Q 020875 5 PVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--AF-PLLKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~--~~-~~~~~v~~~~~~~~al 79 (320)
.++++||||+ |++|.+++..|++.|. +|++.++++ +......++... .. ....++....+..+++
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~-------~V~~~~r~~---~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREGA-------ELAFTYQND---KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMF 78 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTC-------EEEEEESST---TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCC-------EEEEEcCcH---HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHH
Confidence 4579999998 9999999999999987 899999864 122222222211 00 0111222111222222
Q ss_pred -------CCCcEEEEeCCCCCC-----C--C-CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 80 -------TGVNIAVMVGGFPRK-----E--G-ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~~-----~--~-~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
...|++|+.||.... + . .+ ....+..|+.....+.+.+.++-.+.+++|++|+....
T Consensus 79 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~----- 153 (265)
T 1qsg_A 79 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE----- 153 (265)
T ss_dssp HHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----
T ss_pred HHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhc-----
Confidence 267999999997542 1 0 22 34567889999999999887763223578888764321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|....|+.++.....+-+.+++.+. +..|+.
T Consensus 154 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 187 (265)
T 1qsg_A 154 ----RAIPNYNVMGLAKASLEANVRYMANAMG--PEGVRV 187 (265)
T ss_dssp ----SBCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEE
T ss_pred ----cCCCCchHHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1233333567777666677777888774 345663
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-07 Score=83.09 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=94.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
+.++++||||+|++|.+++..|++.|. +|++.++++ ++++....++...... ...++....+..++
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 91 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEGL-------RVFVCARGE--EGLRTTLKELREAGVEADGRTCDVRSVPEIEALVA 91 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 446899999999999999999999986 899999864 3333333333221100 01122111122222
Q ss_pred -----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhh-----cCCCeEEEEEcCcchhhHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQH-----AAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~-----~~~~~~viv~snP~~~~~~~~~ 142 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+.+. . ...++|++|+....
T Consensus 92 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~-~~g~iv~isS~~~~------ 164 (277)
T 2rhc_B 92 AVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLER-GTGRIVNIASTGGK------ 164 (277)
T ss_dssp HHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHH-TEEEEEEECCGGGT------
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhc-CCeEEEEECccccc------
Confidence 337899999999754211 12 3456788988888777776543 1 23678888764321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 165 ---~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 198 (277)
T 2rhc_B 165 ---QGVVHAAPYSASKHGVVGFTKALGLELA--RTGITV 198 (277)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTEEEE
T ss_pred ---cCCCCCccHHHHHHHHHHHHHHHHHHHH--HhCcEE
Confidence 1233323466666656667777777765 345653
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.1e-07 Score=86.46 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=73.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC----------CcceEEeCCh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----------LKGVVATTDA 75 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~----------~~~v~~~~~~ 75 (320)
|||+|+| +|++|.+++..|++.|+ +|.++|+++ ++++...........+. ...++.+++.
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~-------~V~~~D~~~--~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~ 72 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGA-------NVRCIDTDR--NKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEI 72 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCC-------EEEEEECCH--HHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCH
Confidence 7999999 69999999999999987 899999974 34332221100000000 2357888888
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
.+++++||+||++.+.+..+.. ..+...++++++.+.++..++.++|..|
T Consensus 73 ~ea~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 73 EQAVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp HHHGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred HHHHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 8889999999999877654332 2233455666677766654555555444
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=83.32 Aligned_cols=160 Identities=13% Similarity=0.167 Sum_probs=96.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~ 77 (320)
|+.+.++++||||+|++|++++..|++.|. +|++.++++ ++++....++...... ...++....+..+
T Consensus 1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (247)
T 3lyl_A 1 MSLNEKVALVTGASRGIGFEVAHALASKGA-------TVVGTATSQ--ASAEKFENSMKEKGFKARGLVLNISDIESIQN 71 (247)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEecCCCHHHHHH
Confidence 777778999999999999999999999987 899999864 3344333333322111 0112211112222
Q ss_pred h-------cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCcchhhHHHH
Q 020875 78 A-------CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 78 a-------l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP~~~~~~~~ 141 (320)
. +...|++|+.||...... .+ ....+..|+.....+.+.+.+. . +.+++|++|+....
T Consensus 72 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~----- 145 (247)
T 3lyl_A 72 FFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGSVVGS----- 145 (247)
T ss_dssp HHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHH-----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhhc-----
Confidence 2 235799999999754211 12 3346778877766665554332 1 34678888865421
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|....|+.++.-...+-+.+++.+. +..|+.
T Consensus 146 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 179 (247)
T 3lyl_A 146 ----AGNPGQTNYCAAKAGVIGFSKSLAYEVA--SRNITV 179 (247)
T ss_dssp ----HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ----cCCCCcHHHHHHHHHHHHHHHHHHHHHH--HcCeEE
Confidence 1233333567776666677777777764 345653
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=81.78 Aligned_cols=141 Identities=11% Similarity=0.113 Sum_probs=93.1
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|..+.++++||||+|.+|.+++..|++.|. .|++.+++.. .|+.+... + ....+.+.
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~~--------~D~~~~~~-----v---~~~~~~~g 58 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESEHT-------IVHVASRQTG--------LDISDEKS-----V---YHYFETIG 58 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCSTTE-------EEEEESGGGT--------CCTTCHHH-----H---HHHHHHHC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEecCCcc--------cCCCCHHH-----H---HHHHHHhC
Confidence 344567899999999999999999998886 8999998631 45554330 0 01223346
Q ss_pred CCcEEEEeCCCCCCC----CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE
Q 020875 81 GVNIAVMVGGFPRKE----GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~----~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i 153 (320)
..|++|+.||..... ..+ ....+..|+.....+.+.+.++-.+.+++|++|+.... .+.+..-.
T Consensus 59 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~---------~~~~~~~~ 129 (223)
T 3uce_A 59 AFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSR---------KVVANTYV 129 (223)
T ss_dssp SEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGT---------SCCTTCHH
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhc---------cCCCCchH
Confidence 789999999975211 122 33467889999999988887764234577777754321 22333335
Q ss_pred EEeehhhHHHHHHHHHHHcC
Q 020875 154 TCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 154 ~~~t~ld~~r~~~~~a~~l~ 173 (320)
|+.++.-...+-+.+++.++
T Consensus 130 Y~asK~a~~~~~~~la~e~~ 149 (223)
T 3uce_A 130 KAAINAAIEATTKVLAKELA 149 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 66666666677777888876
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=84.26 Aligned_cols=151 Identities=6% Similarity=-0.018 Sum_probs=88.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCC---CCcceEEeCChhhhc-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~---~~~~v~~~~~~~~al- 79 (320)
.++|+||||+|++|.+++..|++.|. +|++.+++. +++.....++... ... ...++....+..+++
T Consensus 26 ~k~vlITGasggiG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~ 96 (302)
T 1w6u_A 26 GKVAFITGGGTGLGKGMTTLLSSLGA-------QCVIASRKM--DVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVS 96 (302)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHH
Confidence 46899999999999999999999987 899999864 3333333333221 100 011222111222222
Q ss_pred ------CCCcEEEEeCCCCCCC---CC---CHHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 ------TGVNIAVMVGGFPRKE---GM---ERKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~---~~---~r~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|+||+.||..... .. +....+..|+.....+.+.+.++. ....++|++|+....
T Consensus 97 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~-------- 168 (302)
T 1w6u_A 97 ELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAE-------- 168 (302)
T ss_dssp HHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHH--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccc--------
Confidence 3569999999964321 11 234567788887777766654431 134677777754211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+....|+.++.....+-..+++.+.
T Consensus 169 -~~~~~~~~Y~~sK~a~~~~~~~la~~~~ 196 (302)
T 1w6u_A 169 -TGSGFVVPSASAKAGVEAMSKSLAAEWG 196 (302)
T ss_dssp -HCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred -cCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 1223333566666666667777777753
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.7e-07 Score=79.38 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=98.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
+.++++||||+|.+|.+++..|++.|. .|++.+++. .++++....++...... ...++....+..+++
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGA-------AVALTYVNA-AERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 346899999999999999999999987 788887653 23343333344322111 111222222223333
Q ss_pred ------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 80 ------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+.+.-.+.+++|++++.... ...
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~--------~~~ 173 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAE--------LVP 173 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGT--------CCC
T ss_pred HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhc--------cCC
Confidence 37899999999754221 12 34567889888888888877763235678888765421 112
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+|..-.|+.++.-...+-+.+|+.++ +..|+
T Consensus 174 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIr 204 (271)
T 3v2g_A 174 WPGISLYSASKAALAGLTKGLARDLG--PRGIT 204 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhh--hhCeE
Confidence 33333567777766677777888775 33454
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=84.11 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=78.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al 79 (320)
+.++|+||||+|++|++++..|++ .|. +|++++++. +++.....++...... ...++....+..+++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 73 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-------DVVLTARDV--TRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALR 73 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-------EEEEEESSH--HHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-------eEEEEeCCh--HHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHH
Confidence 456899999999999999999999 887 899999863 3333333334321111 011222112223333
Q ss_pred C-------CCcEEEEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 80 T-------GVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 80 ~-------~aDvVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
+ +.|+|||+||...... .+....+..|+.....+.+.+.+...+..++|++|+..
T Consensus 74 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~ 141 (276)
T 1wma_A 74 DFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIM 141 (276)
T ss_dssp HHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH
T ss_pred HHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChh
Confidence 3 7899999998753221 11234678999999999999887742335777777643
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-07 Score=81.81 Aligned_cols=158 Identities=18% Similarity=0.115 Sum_probs=91.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC- 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al- 79 (320)
|+.+.++++||||+|.+|.+++..|++.|. +|++.++++ ++++....++. ......++....+..+++
T Consensus 1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~ 69 (245)
T 1uls_A 1 MRLKDKAVLITGAAHGIGRATLELFAKEGA-------RLVACDIEE--GPLREAAEAVG--AHPVVMDVADPASVERGFA 69 (245)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTT--CEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcC--CEEEEecCCCHHHHHHHHH
Confidence 666678999999999999999999999987 899999863 33332221110 000011121111222222
Q ss_pred ------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHC
Q 020875 80 ------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
...|++|+.||...... .+ ..+.+..|+.....+.+.+.++- ....++|++|+.. ..
T Consensus 70 ~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~-------- 140 (245)
T 1uls_A 70 EALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YL-------- 140 (245)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GG--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hc--------
Confidence 35899999999754211 12 34567788887777766655431 1236778777643 21
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.|..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 141 -~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 173 (245)
T 1uls_A 141 -GNLGQANYAASMAGVVGLTRTLALELG--RWGIRV 173 (245)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHh--HhCeEE
Confidence 122222355555555556666777664 345653
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-07 Score=83.99 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=96.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC------CCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP------LLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~------~~~~v~~~~~~~~ 77 (320)
+.++++||||+|++|.+++..|++.|. +|++.|+++ ++++....++...... ...+++...+..+
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~ 80 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-------SVMIVGRNP--DKLAGAVQELEALGANGGAIRYEPTDITNEDETAR 80 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHH
Confidence 356899999999999999999999987 899999864 4444444444432110 0112211112222
Q ss_pred hc-------CCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHH
Q 020875 78 AC-------TGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALIL 141 (320)
Q Consensus 78 al-------~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~ 141 (320)
++ ...|++|+.||.....+ .+ ....+..|+.....+.+.+.++- ...+++|++|+....
T Consensus 81 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~----- 155 (281)
T 3svt_A 81 AVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAAS----- 155 (281)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH-----
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHc-----
Confidence 22 36799999999732111 12 24467788887776666554431 134678888864321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 156 ----~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~v 189 (281)
T 3svt_A 156 ----NTHRWFGAYGVTKSAVDHLMQLAADELG--ASWVRV 189 (281)
T ss_dssp ----SCCTTCTHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ----CCCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 2333333577777777778788888875 345653
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-07 Score=84.06 Aligned_cols=156 Identities=15% Similarity=0.244 Sum_probs=89.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA----- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (320)
+.++++||||+|.+|.+++..|++.|. .|++.|+++ ++++....++.........++....+..+.
T Consensus 26 ~gk~vlVTGas~gIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (266)
T 3grp_A 26 TGRKALVTGATGGIGEAIARCFHAQGA-------IVGLHGTRE--DKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAE 96 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHH
Confidence 346899999999999999999999997 899999863 344333222211100011122111122222
Q ss_pred --cCCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 --CTGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 --l~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+...|++|+.||...... . +..+.+..|+.. ++.+++.+++.. .+++|++|+.....
T Consensus 97 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~Iv~isS~~~~~--------- 165 (266)
T 3grp_A 97 REMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR--YGRIINITSIVGVV--------- 165 (266)
T ss_dssp HHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCC-------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcEEEEECCHHHcC---------
Confidence 347899999999754211 1 234467788877 555556665553 46788888654221
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.+..-.|+.++.....+-+.+|+.+. +..|+.
T Consensus 166 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~v 198 (266)
T 3grp_A 166 GNPGQTNYCAAKAGLIGFSKALAQEIA--SRNITV 198 (266)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhh--hhCcEE
Confidence 122222456666555666677777765 335653
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=83.12 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=90.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc-ccCC---CCcceEEeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AAFP---LLKGVVATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~-~~~~---~~~~v~~~~~~~~al 79 (320)
+.++|+||||+|++|.+++..|++.|. +|+++++++ ++++....++.. .... ...++....+..+++
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASAGS-------TVIITGTSG--ERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAF 76 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHH
Confidence 457899999999999999999999886 899999863 333322223321 0100 011222112233333
Q ss_pred -------CCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 80 -------TGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
.+.|+|||.||...... . +..+.+..|+.....+.+. +++.. ..++|++|+....
T Consensus 77 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~------ 148 (248)
T 2pnf_A 77 EEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR--WGRIVNISSVVGF------ 148 (248)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT--CEEEEEECCHHHH------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhc------
Confidence 38999999998754211 1 2345677888887555444 44432 3577777753211
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
. +.+..-.|+.++.....+-..+++.+. +..++.
T Consensus 149 -~--~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v 182 (248)
T 2pnf_A 149 -T--GNVGQVNYSTTKAGLIGFTKSLAKELA--PRNVLV 182 (248)
T ss_dssp -H--CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -C--CCCCCchHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1 223222456666655666666777664 234553
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=5.9e-07 Score=79.51 Aligned_cols=158 Identities=12% Similarity=0.093 Sum_probs=97.2
Q ss_pred CCCCEEEEEcCCCh--hHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C-C---CCcceEEeCCh
Q 020875 3 KEPVRVLVTGAAGQ--IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F-P---LLKGVVATTDA 75 (320)
Q Consensus 3 ~~~~kI~IiGA~G~--vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~-~---~~~~v~~~~~~ 75 (320)
.+.++++||||+|+ +|.+++..|++.|. +|++.++++. ......++.... . . ...+++...+.
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-------~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 74 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-------RLIFTYAGER---LEKSVHELAGTLDRNDSIILPCDVTNDAEI 74 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-------EEEEEESSGG---GHHHHHHHHHTSSSCCCEEEECCCSSSHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-------EEEEecCchH---HHHHHHHHHHhcCCCCceEEeCCCCCHHHH
Confidence 34578999999988 99999999999987 8999998632 111222222111 0 0 11222222222
Q ss_pred hhhc-------CCCcEEEEeCCCCCC-----C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH
Q 020875 76 VEAC-------TGVNIAVMVGGFPRK-----E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 76 ~~al-------~~aDvVi~~ag~~~~-----~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~ 138 (320)
.+.+ ...|++|+.||.... + ..+ ....+..|+.....+.+.+...-.+.+++|++|+....
T Consensus 75 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~-- 152 (266)
T 3oig_A 75 ETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGE-- 152 (266)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT--
T ss_pred HHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccc--
Confidence 2222 368999999987531 1 112 23467788888888888887764345778888865422
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.-...+-+.+++.+. +..|+.
T Consensus 153 -------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 186 (266)
T 3oig_A 153 -------LVMPNYNVMGVAKASLDASVKYLAADLG--KENIRV 186 (266)
T ss_dssp -------SCCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -------ccCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1333333566676666677777777765 345653
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.4e-08 Score=85.04 Aligned_cols=151 Identities=15% Similarity=0.057 Sum_probs=87.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-------CC---CCcceEEeCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-------FP---LLKGVVATTD 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-------~~---~~~~v~~~~~ 74 (320)
.++|+||||+|++|.+++..|++.|. +|+++++++ +.++....++.... .. ...++....+
T Consensus 7 ~k~vlITGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 77 (264)
T 2pd6_A 7 SALALVTGAGSGIGRAVSVRLAGEGA-------TVAACDLDR--AAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARA 77 (264)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHTC------------CCEEEECCTTSHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHHHhcCccccccCcceEEEEecCCCHHH
Confidence 46899999999999999999999986 899999863 33332222221110 00 0011111112
Q ss_pred hhhhcCC-------C-cEEEEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEEcCcchhh
Q 020875 75 AVEACTG-------V-NIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTN 137 (320)
Q Consensus 75 ~~~al~~-------a-DvVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~snP~~~~ 137 (320)
..+++++ . |+||+.||...... ....+.+..|+.....+.+.+.+.. ....++|++|+....
T Consensus 78 ~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~- 156 (264)
T 2pd6_A 78 ARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGK- 156 (264)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHH-
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhc-
Confidence 2333333 3 99999999754211 1234567788887777777765542 113678888764321
Q ss_pred HHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
. +.|....|+.++.....+-..+++.+.
T Consensus 157 ------~--~~~~~~~Y~~sK~a~~~~~~~la~e~~ 184 (264)
T 2pd6_A 157 ------V--GNVGQTNYAASKAGVIGLTQTAARELG 184 (264)
T ss_dssp ------H--CCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ------c--CCCCChhhHHHHHHHHHHHHHHHHHhh
Confidence 1 223333566666666666666777653
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-07 Score=83.27 Aligned_cols=153 Identities=16% Similarity=0.099 Sum_probs=95.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChh-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV----- 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~----- 76 (320)
.++++||||+|.+|.+++..|++.|. +|++.+++.+.+.++.....+...... ...++....+..
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 121 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREGA-------DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHK 121 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46899999999999999999999997 899998863222232222222221110 112222211222
Q ss_pred --hhcCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 77 --EACTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 77 --~al~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+.+...|++|+.||...... .+ ....+..|+.....+.+.+...-.+.+++|++|+.... .+
T Consensus 122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~---------~~ 192 (294)
T 3r3s_A 122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAY---------QP 192 (294)
T ss_dssp HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGT---------SC
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhc---------cC
Confidence 22347899999999743211 12 34578899999999999888765345678888764321 22
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+..-.|+.++.-...+-+.+++.+.
T Consensus 193 ~~~~~~Y~asKaa~~~l~~~la~e~~ 218 (294)
T 3r3s_A 193 SPHLLDYAATKAAILNYSRGLAKQVA 218 (294)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 33333567776666677777887774
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-07 Score=82.56 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=93.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh-------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE------- 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~------- 77 (320)
.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++.........+++...+..+
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGC-------HVLCADIDG--DAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVA 99 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987 899999864 33443333331111001112222112222
Q ss_pred hcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 78 ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
.+...|++|+.||..... ..+ ....+..|+.....+.+.+...- ...+++|++|+.... .+.+
T Consensus 100 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~---------~~~~ 170 (277)
T 3gvc_A 100 AFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQ---------VAVG 170 (277)
T ss_dssp HHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT---------SCCT
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc---------cCCC
Confidence 234789999999975321 122 34467788877666655544321 134778888864421 2333
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
..-.|+.++.....+-+.+|+.++ +..|+.
T Consensus 171 ~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 200 (277)
T 3gvc_A 171 GTGAYGMSKAGIIQLSRITAAELR--SSGIRS 200 (277)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CchhHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 333567776666677777777764 345653
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.8e-07 Score=80.69 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh-
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA- 78 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a- 78 (320)
.+.++++||||+|.+|.+++..|++.|. .|++.|+++ +.++....++...... ...++....+..++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~ 96 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGV-------TVGALGRTR--TEVEEVADEIVGAGGQAIALEADVSDELQMRNAV 96 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3456899999999999999999999987 899999874 4444444444332111 01122221122222
Q ss_pred ------cCCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHH
Q 020875 79 ------CTGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 79 ------l~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
+...|++|+.||.... + ..+ ....+..|+.....+.+.+ ++.. .+++|++|+.....
T Consensus 97 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~~---- 170 (283)
T 3v8b_A 97 RDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG--GGAIVVVSSINGTR---- 170 (283)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTT----
T ss_pred HHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CceEEEEcChhhcc----
Confidence 3378999999997431 1 122 3346778877766666655 5443 46788888643210
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
..+.|..-.|+.++.-...+-+.+|..++ +..|+..
T Consensus 171 ---~~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn 206 (283)
T 3v8b_A 171 ---TFTTPGATAYTATKAAQVAIVQQLALELG--KHHIRVN 206 (283)
T ss_dssp ---BCCSTTCHHHHHHHHHHHHHHHHHHHHTT--TTTEEEE
T ss_pred ---CCCCCCchHHHHHHHHHHHHHHHHHHHhC--ccCcEEE
Confidence 00222223467777666777788888875 4566643
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-07 Score=80.75 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=92.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-C---CCcceEEeCChhhh-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-P---LLKGVVATTDAVEA- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~---~~~~v~~~~~~~~a- 78 (320)
+.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++..... . ...+++...+..++
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~ 79 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGA-------NVAVAGRST--ADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALA 79 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHH
Confidence 457899999999999999999999997 899999874 444444445543210 0 01122211122222
Q ss_pred ------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 ------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 ------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+...|++|+.||..... ..+ ....+..|+.....+.+.+.++ . ...++|++|+.....
T Consensus 80 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~------ 152 (262)
T 3pk0_A 80 GRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIAS-GSGRVVLTSSITGPI------ 152 (262)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-SSCEEEEECCSBTTT------
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEechhhcc------
Confidence 23799999999975321 122 2345778877666665554443 1 236788887644210
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|..-.|+.++.-...+-+.+|+.+.
T Consensus 153 --~~~~~~~~Y~asK~a~~~l~~~la~e~~ 180 (262)
T 3pk0_A 153 --TGYPGWSHYGATKAAQLGFMRTAAIELA 180 (262)
T ss_dssp --BCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred --CCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 2333333567776666677777887764
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=83.70 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=92.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC----- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al----- 79 (320)
.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++.........++....+..+.+
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 98 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGY-------GVALAGRRL--DALQETAAEIGDDALCVPTDVTDPDSVRALFTATVE 98 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999997 899999864 3444333333211101111222212222223
Q ss_pred --CCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 80 --TGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 80 --~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
...|++|+.||.... + ..+ ..+.+..|+.....+ ++.+++...+.+++|++|+.... .
T Consensus 99 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~---------~ 169 (272)
T 4dyv_A 99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISAT---------S 169 (272)
T ss_dssp HHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTT---------S
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhc---------C
Confidence 379999999997432 1 112 245677887774444 44554433124678888764421 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.+..-.|+.++.....+-+.+|..++ +..|+.
T Consensus 170 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 202 (272)
T 4dyv_A 170 PRPYSAPYTATKHAITGLTKSTSLDGR--VHDIAC 202 (272)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhC--ccCEEE
Confidence 233333566676666677777887764 345653
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=82.79 Aligned_cols=156 Identities=10% Similarity=0.113 Sum_probs=96.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCCh-------hh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA-------VE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~-------~~ 77 (320)
.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++.........++....+. .+
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGA-------EVLLTGRNE--SNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999997 899999874 334333322211110011122111111 12
Q ss_pred hcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCC
Q 020875 78 ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK 151 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~ 151 (320)
.+...|++|+.||...... .+ ....+..|+.....+.+.+..+-.+.+++|++|+.... .+.|..
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~~~ 149 (255)
T 4eso_A 79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADE---------GGHPGM 149 (255)
T ss_dssp HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGS---------SBCTTB
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhc---------CCCCCc
Confidence 3347899999999854211 12 34568899998888888887753234678888765421 223333
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
-.|+.++.-...+-+.+++.+. +..|+
T Consensus 150 ~~Y~asKaa~~~~~~~la~e~~--~~gi~ 176 (255)
T 4eso_A 150 SVYSASKAALVSFASVLAAELL--PRGIR 176 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTG--GGTCE
T ss_pred hHHHHHHHHHHHHHHHHHHHHh--hhCcE
Confidence 3566666666677777888764 33455
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-07 Score=84.54 Aligned_cols=168 Identities=13% Similarity=0.024 Sum_probs=98.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc---C
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---T 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al---~ 80 (320)
+.++++||||+|++|.+++..|++.|. +|++.++++ ++++....++.........++....+..+++ .
T Consensus 15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 15 AQRTVVITGANSGLGAVTARELARRGA-------TVIMAVRDT--RKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 346899999999999999999999987 899999874 3333222222100000011222112233333 3
Q ss_pred CCcEEEEeCCCCCCC----CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH----CCCCCCCc
Q 020875 81 GVNIAVMVGGFPRKE----GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF----APSIPAKN 152 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~----~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~----~~~~~~~~ 152 (320)
..|++|+.||+.... .+.....+..|+.....+.+.+.... . .++|++|+........-... ...+++..
T Consensus 86 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~-~-~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
T 3rd5_A 86 GADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRL-T-DRVVTVSSMAHWPGRINLEDLNWRSRRYSPWL 163 (291)
T ss_dssp CEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGE-E-EEEEEECCGGGTTCCCCSSCTTCSSSCCCHHH
T ss_pred CCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hheeEeechhhccCCCCcccccccccCCCCcc
Confidence 679999999975321 12345678999999999999998875 3 36777776442210000000 00011112
Q ss_pred EEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 153 ITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 153 i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.|+.++.-...+-+.+++.++-.-..|+..
T Consensus 164 ~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~ 193 (291)
T 3rd5_A 164 AYSQSKLANLLFTSELQRRLTAAGSPLRAL 193 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 466677766677777887775433336633
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.8e-07 Score=81.96 Aligned_cols=157 Identities=16% Similarity=0.124 Sum_probs=94.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++|+||||+|.+|.+++..|++.|. +|++.++++ ++++....++...... ...++....+..+++
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGA-------RLVLSDVDQ--PALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADE 101 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 35899999999999999999999997 899999874 4444444444322111 111222222223333
Q ss_pred -----CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 -----TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+ .+.. ..+++|++|+....
T Consensus 102 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~-------- 172 (301)
T 3tjr_A 102 AFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQG-TGGHIAFTASFAGL-------- 172 (301)
T ss_dssp HHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-SCEEEEEECCGGGT--------
T ss_pred HHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCcEEEEeCchhhc--------
Confidence 37899999999753211 12 3446777877766666654 4433 34678888765422
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.|..-.|+.++.-...+-..++..+. +..|+..
T Consensus 173 -~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~ 207 (301)
T 3tjr_A 173 -VPNAGLGTYGVAKYGVVGLAETLAREVK--PNGIGVS 207 (301)
T ss_dssp -SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCcEEE
Confidence 1233223466666655666666777764 3456643
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.7e-07 Score=81.99 Aligned_cols=149 Identities=11% Similarity=0.078 Sum_probs=89.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-chhHHHHHHHhcccCCCCcceE-EeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDAAFPLLKGVV-ATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-~~~~~~~~dl~~~~~~~~~~v~-~~~~~~~al~~a 82 (320)
.++|+||||+|++|.+++..|++.|. +|++.++++.. .++.....|+.+... +. ......+.+...
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~Dl~~~~~-----v~~~~~~~~~~~g~i 75 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGS-------KVIDLSIHDPGEAKYDHIECDVTNPDQ-----VKASIDHIFKEYGSI 75 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESSCCCSCSSEEEECCTTCHHH-----HHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEecCcccCCceEEEEecCCCHHH-----HHHHHHHHHHHcCCC
Confidence 46899999999999999999999987 89999986421 011111223332210 00 000111223479
Q ss_pred cEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHHHHCCCCCCCcEE
Q 020875 83 NIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAPSIPAKNIT 154 (320)
Q Consensus 83 DvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~ 154 (320)
|++|+.||..... ..+ ....+..|+.....+.+.+.++-. ...++|++|+.... .+.+....|
T Consensus 76 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~---------~~~~~~~~Y 146 (264)
T 2dtx_A 76 SVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQAS---------IITKNASAY 146 (264)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGT---------SCCTTBHHH
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhc---------cCCCCchhH
Confidence 9999999975321 112 345677888876666655544311 23678888764321 123333356
Q ss_pred EeehhhHHHHHHHHHHHcCC
Q 020875 155 CLTRLDHNRALGQISEKLNV 174 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v 174 (320)
+.++.....+-+.+++.++-
T Consensus 147 ~~sK~a~~~~~~~la~e~~~ 166 (264)
T 2dtx_A 147 VTSKHAVIGLTKSIALDYAP 166 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77766666777778888763
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.2e-07 Score=80.78 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=94.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-----CCcceEEeCC---h
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTD---A 75 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-----~~~~v~~~~~---~ 75 (320)
+.++++||||+|.+|.+++..|++.|. +|++.|+++ +.++....++...... ...++....+ .
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~ 79 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEGA-------NVLINGRRE--ENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDV 79 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHH
Confidence 456899999999999999999999987 899999874 3444333334322100 0011111111 2
Q ss_pred hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 76 VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.+.+...|++|+.||...... .+ ..+.+..|+... +.+++.+++. ..+++|++|+....
T Consensus 80 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS~~~~--------- 148 (267)
T 3t4x_A 80 IEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER--KEGRVIFIASEAAI--------- 148 (267)
T ss_dssp HHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TEEEEEEECCGGGT---------
T ss_pred HHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCCEEEEEcchhhc---------
Confidence 233457999999999754221 12 234577887774 4445555544 34678888765422
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 149 ~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 182 (267)
T 3t4x_A 149 MPSQEMAHYSATKTMQLSLSRSLAELTT--GTNVTV 182 (267)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEE
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHhC--CCCeEE
Confidence 1233333567776666677778888765 455664
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.3e-07 Score=79.20 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=90.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++||||+|.+|.+++..|++.|. +|++.|+++. ++++. .+...... ...++....+..++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~-~~~~~---~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (249)
T 2ew8_A 7 DKLAVITGGANGIGRAIAERFAVEGA-------DIAIADLVPA-PEAEA---AIRNLGRRVLTVKCDVSQPGDVEAFGKQ 75 (249)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCC-HHHHH---HHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCCch-hHHHH---HHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 46899999999999999999999987 8999998741 22222 22211100 01122111122222
Q ss_pred ----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 79 ----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+...|++|+.||...... .+ ..+.+..|+.....+.+. +++.. ..++|++|+....
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-------- 145 (249)
T 2ew8_A 76 VISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYW-------- 145 (249)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGG--------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhc--------
Confidence 357899999999753211 12 334677887775554444 65543 3678888764321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 146 -~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 179 (249)
T 2ew8_A 146 -LKIEAYTHYISTKAANIGFTRALASDLG--KDGITV 179 (249)
T ss_dssp -SCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -cCCCCchhHHHHHHHHHHHHHHHHHHHH--hcCcEE
Confidence 1233333466666666677777777764 345553
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.7e-08 Score=88.24 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=61.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~~aDv 84 (320)
+||+|+||+|++|++++..|++.|+ +|++++++.+ .+.. ...++...... ...++....++.++++++|+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~-~~~~-~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~ 82 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGH-------PTYVFTRPNS-SKTT-LLDEFQSLGAIIVKGELDEHEKLVELMKKVDV 82 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTC-------CEEEEECTTC-SCHH-HHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CeEEEECCCchHHHHHHHHHHHCCC-------cEEEEECCCC-chhh-HHHHhhcCCCEEEEecCCCHHHHHHHHcCCCE
Confidence 3899999999999999999999886 7888888742 1211 11112211111 11233333356788999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~ 121 (320)
||++++... +...+++++.+++.+
T Consensus 83 vi~~a~~~~-------------~~~~~~l~~aa~~~g 106 (318)
T 2r6j_A 83 VISALAFPQ-------------ILDQFKILEAIKVAG 106 (318)
T ss_dssp EEECCCGGG-------------STTHHHHHHHHHHHC
T ss_pred EEECCchhh-------------hHHHHHHHHHHHhcC
Confidence 999987532 223467778887764
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.6e-07 Score=80.00 Aligned_cols=157 Identities=16% Similarity=0.090 Sum_probs=95.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++++||||+|.+|.+++..|++.|. +|++.|+++ +.++....++...... ...++....+..+.+
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 82 (256)
T 3gaf_A 12 DAVAIVTGAAAGIGRAIAGTFAKAGA-------SVVVTDLKS--EGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKA 82 (256)
T ss_dssp TCEEEECSCSSHHHHHHHHHHHHHTC-------EEEEEESSH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999997 899999864 3444333344322111 111222211222222
Q ss_pred -----CCCcEEEEeCCCCCCC--CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 80 -----TGVNIAVMVGGFPRKE--GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~--~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
...|++|+.||..... ..+ ....+..|+.....+.+.+.++- ...+++|++|+.... .+
T Consensus 83 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~---------~~ 153 (256)
T 3gaf_A 83 ALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGE---------NT 153 (256)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT---------CC
T ss_pred HHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHc---------CC
Confidence 3789999999975421 122 33457788777776666653321 134688888865421 22
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+..-.|+.++.-...+-+.+++.++ +..|+.
T Consensus 154 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 185 (256)
T 3gaf_A 154 NVRMASYGSSKAAVNHLTRNIAFDVG--PMGIRV 185 (256)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHh--hhCcEE
Confidence 33333567777666677777887765 345653
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=4.5e-07 Score=82.16 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=66.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHh--------cccCC--------
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV--------DAAFP-------- 64 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~--------~~~~~-------- 64 (320)
|..+++||+|+| +|.+|+.++..|+..|+ +|+++|+++ ++++.....+. .....
T Consensus 11 ~~~~~~~I~VIG-~G~mG~~iA~~la~~G~-------~V~~~d~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~ 80 (302)
T 1f0y_A 11 KKIIVKHVTVIG-GGLMGAGIAQVAAATGH-------TVVLVDQTE--DILAKSKKGIEESLRKVAKKKFAENPKAGDEF 80 (302)
T ss_dssp -CCCCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred ccccCCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCccccchhh
Confidence 555668999999 59999999999999887 899999974 33332111010 10000
Q ss_pred ---CCcceEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEE
Q 020875 65 ---LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKV 127 (320)
Q Consensus 65 ---~~~~v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~v 127 (320)
....++.+++..+++++||+||.+.. . +....+.+.+.+.++.+++.++
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~aD~Vi~avp--~------------~~~~~~~v~~~l~~~~~~~~iv 132 (302)
T 1f0y_A 81 VEKTLSTIATSTDAASVVHSTDLVVEAIV--E------------NLKVKNELFKRLDKFAAEHTIF 132 (302)
T ss_dssp HHHHHHTEEEESCHHHHTTSCSEEEECCC--S------------CHHHHHHHHHHHTTTSCTTCEE
T ss_pred HHHHHhceEEecCHHHhhcCCCEEEEcCc--C------------cHHHHHHHHHHHHhhCCCCeEE
Confidence 01246677787778999999999852 1 1123355666777776556543
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-06 Score=84.79 Aligned_cols=118 Identities=12% Similarity=0.071 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC----------------C
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----------------L 66 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~----------------~ 66 (320)
+.|||+|+| +|++|..++..|++. |+. +|+++|+++ ++..+....+.....+. .
T Consensus 17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~------~V~~~D~~~--~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~ 87 (478)
T 3g79_A 17 PIKKIGVLG-MGYVGIPAAVLFADAPCFE------KVLGFQRNS--KSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKA 87 (478)
T ss_dssp SCCEEEEEC-CSTTHHHHHHHHHHSTTCC------EEEEECCCC--TTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHhCCCC------eEEEEECCh--hHhHHHHHHHHhcCCCccccCCCHHHHHHhhccc
Confidence 458999999 699999999999998 752 699999985 32222233343321111 3
Q ss_pred cceEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc-Ccch
Q 020875 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPAN 135 (320)
Q Consensus 67 ~~v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s-nP~~ 135 (320)
..+..+++ .+++++||+||++.+.|.....++ ..++..++..++.+.++..++..+|..| -|.+
T Consensus 88 g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pg 152 (478)
T 3g79_A 88 GKFECTPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPG 152 (478)
T ss_dssp TCEEEESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTT
T ss_pred CCeEEeCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChH
Confidence 46788887 789999999999987765332210 0122334445555555543444444443 3443
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=98.48 E-value=4e-07 Score=81.27 Aligned_cols=156 Identities=13% Similarity=0.134 Sum_probs=94.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
+.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++...... ...++....+..+++
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 95 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGA-------RILINGTDP--SRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFA 95 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEECCSCH--HHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 346899999999999999999999987 899999864 4444444444332111 112232222233333
Q ss_pred ------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 80 ------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
...|++|+.||...... .+ ....+..|+.....+.+. +.+.. .+++|++|+....
T Consensus 96 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iV~isS~~~~------- 166 (271)
T 4ibo_A 96 RLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG--YGKIVNIGSLTSE------- 166 (271)
T ss_dssp HHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-------
T ss_pred HHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhC-------
Confidence 37899999999753221 12 334577887766666444 44433 3678888764321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 167 --~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 200 (271)
T 4ibo_A 167 --LARATVAPYTVAKGGIKMLTRAMAAEWA--QYGIQA 200 (271)
T ss_dssp --SBCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEE
Confidence 1233333566676666677777887765 445663
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.48 E-value=8.3e-07 Score=79.32 Aligned_cols=158 Identities=14% Similarity=0.080 Sum_probs=93.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc----------cchhHHHHHHHhcccCC---CCcceE
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA----------AEALNGVKMELVDAAFP---LLKGVV 70 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~----------~~~~~~~~~dl~~~~~~---~~~~v~ 70 (320)
+.++++||||+|.+|.+++..|++.|. +|++.|++++ .+.+......+...... ...+++
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 81 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAGA-------DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVK 81 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 346899999999999999999999997 8999998632 12222222222221110 011222
Q ss_pred EeCChhhh-------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCc
Q 020875 71 ATTDAVEA-------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANP 133 (320)
Q Consensus 71 ~~~~~~~a-------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP 133 (320)
...+..+. +...|++|+.||..... ..+ ..+.+..|+.....+.+.+ .+. ..+++|++|+.
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 159 (281)
T 3s55_A 82 DRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR--NYGRIVTVSSM 159 (281)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECCh
Confidence 21222222 33789999999975421 122 3446778887777666664 443 24678888865
Q ss_pred chhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
... .+.+..-.|+.++.-...+-+.+|+.+. +..|+.
T Consensus 160 ~~~---------~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 196 (281)
T 3s55_A 160 LGH---------SANFAQASYVSSKWGVIGLTKCAAHDLV--GYGITV 196 (281)
T ss_dssp GGG---------SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE
T ss_pred hhc---------CCCCCCchhHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 421 1233333566666666677777888764 345653
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-07 Score=82.69 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=88.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC--cCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcC-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGV--MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACT- 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~--~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~- 80 (320)
.++|+||||+|++|.+++..|++.| . +|++++++. ++++.. .++..... ....++....+..++++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g~~~-------~V~~~~r~~--~~~~~l-~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-------HIIATARDV--EKATEL-KSIKDSRVHVLPLTVTCDKSLDTFVSK 72 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCC-------EEEEEESSG--GGCHHH-HTCCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHhcCCCc-------EEEEEecCH--HHHHHH-HhccCCceEEEEeecCCHHHHHHHHHH
Confidence 4589999999999999999999988 6 899999864 233211 11100000 00112211112333333
Q ss_pred --------CCcEEEEeCCCCC-C-C--CCC---HHHHHHhhHHHHHHHHHHHhhh----------cC---CCeEEEEEcC
Q 020875 81 --------GVNIAVMVGGFPR-K-E--GME---RKDVMSKNVSIYKAQASALEQH----------AA---PNCKVLVVAN 132 (320)
Q Consensus 81 --------~aDvVi~~ag~~~-~-~--~~~---r~~~~~~n~~~~~~i~~~i~~~----------~~---~~~~viv~sn 132 (320)
+.|+||++||... . + ..+ ....+..|+.....+.+.+..+ .. +..++|++|+
T Consensus 73 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS 152 (250)
T 1yo6_A 73 VGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS 152 (250)
T ss_dssp HHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECC
T ss_pred HHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEecc
Confidence 7999999998754 1 1 112 2345677877766666655443 10 0357888876
Q ss_pred cchhhHHHHHHHCCCC-CCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 133 PANTNALILKEFAPSI-PAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 133 P~~~~~~~~~~~~~~~-~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
........ . .... ++...|+.++.....+-..+++.+. +..|+
T Consensus 153 ~~~~~~~~--~-~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~ 196 (250)
T 1yo6_A 153 GLGSITDN--T-SGSAQFPVLAYRMSKAAINMFGRTLAVDLK--DDNVL 196 (250)
T ss_dssp GGGCSTTC--C-STTSSSCBHHHHHHHHHHHHHHHHHHHHTG--GGTCE
T ss_pred CccccCCc--c-cccccCCccHHHHHHHHHHHHHHHHHHHhc--cCCeE
Confidence 54221000 0 0000 1222466666666667777777763 33455
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=83.26 Aligned_cols=154 Identities=8% Similarity=0.039 Sum_probs=90.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA 78 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a 78 (320)
+.+.++|+||||+|++|.+++..|++.|. +|++++++.. .++.....+...... ...++....+..++
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 101 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGA-------DVAIWYNSHP--ADEKAEHLQKTYGVHSKAYKCNISDPKSVEET 101 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTC-------EEEEEESSSC--CHHHHHHHHHHHCSCEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHHHHHHHHhcCCcceEEEeecCCHHHHHHH
Confidence 34557899999999999999999999887 8999998752 222222222111100 01122111122233
Q ss_pred c-------CCCcEEEEeCCCCCC--C---CCC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHH
Q 020875 79 C-------TGVNIAVMVGGFPRK--E---GME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNAL 139 (320)
Q Consensus 79 l-------~~aDvVi~~ag~~~~--~---~~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~ 139 (320)
+ ...|+||+.||.... + ..+ ....+..|+.. ++.+.+.+++.. ..++|++|+.....
T Consensus 102 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~-- 177 (279)
T 3ctm_A 102 ISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG--KGSLIITSSISGKI-- 177 (279)
T ss_dssp HHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCCTTSC--
T ss_pred HHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEECchHhcc--
Confidence 3 348999999986532 1 111 23456778777 667777777653 35777777643211
Q ss_pred HHHHHCCC-CCCCcEEEeehhhHHHHHHHHHHHcCC
Q 020875 140 ILKEFAPS-IPAKNITCLTRLDHNRALGQISEKLNV 174 (320)
Q Consensus 140 ~~~~~~~~-~~~~~i~~~t~ld~~r~~~~~a~~l~v 174 (320)
+. .+....|+.++.....+-..+++.++-
T Consensus 178 ------~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 207 (279)
T 3ctm_A 178 ------VNIPQLQAPYNTAKAACTHLAKSLAIEWAP 207 (279)
T ss_dssp ------C---CCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------CCCCCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 10 122224666666666777778888764
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.6e-07 Score=81.00 Aligned_cols=154 Identities=11% Similarity=0.024 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChh----
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV---- 76 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~---- 76 (320)
|+.+.++++||||+|++|.+++..|++.|. +|++.|+++. ++.....+.. ......++....+..
T Consensus 23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~--~~~~~~Dv~~~~~v~~~~~ 91 (260)
T 3gem_A 23 MTLSSAPILITGASQRVGLHCALRLLEHGH-------RVIISYRTEH--ASVTELRQAG--AVALYGDFSCETGIMAFID 91 (260)
T ss_dssp ----CCCEEESSTTSHHHHHHHHHHHHTTC-------CEEEEESSCC--HHHHHHHHHT--CEEEECCTTSHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCChH--HHHHHHHhcC--CeEEECCCCCHHHHHHHHH
Confidence 444456899999999999999999999987 7999998752 2221111111 000011111111222
Q ss_pred ---hhcCCCcEEEEeCCCCCCCC--CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 77 ---EACTGVNIAVMVGGFPRKEG--ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 77 ---~al~~aDvVi~~ag~~~~~~--~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+.+...|++|+.||...... .+ ....+..|+.....+.+.+..+- ...+++|++|+.... .
T Consensus 92 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~---------~ 162 (260)
T 3gem_A 92 LLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTR---------K 162 (260)
T ss_dssp HHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG---------T
T ss_pred HHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhc---------C
Confidence 22347899999999754222 22 23467788777666666554321 123678888865421 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCC
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNV 174 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v 174 (320)
+.+..-.|+.++.....+-+.+|+.++-
T Consensus 163 ~~~~~~~Y~asKaa~~~l~~~la~e~~~ 190 (260)
T 3gem_A 163 GSSKHIAYCATKAGLESLTLSFAARFAP 190 (260)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHhHHHHHHHHHHHHHHHHHHHCC
Confidence 3333335677777667777888888764
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-07 Score=83.52 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc---chhHHHHHHHhcccC-CCCcceEEeCChh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMELVDAAF-PLLKGVVATTDAV 76 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~---~~~~~~~~dl~~~~~-~~~~~v~~~~~~~ 76 (320)
|+ +++||+|+||+|++|++++..|++.|+ +|++++++.+. ++++. ...+..... ....++....++.
T Consensus 1 M~-~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~d~~~l~ 71 (313)
T 1qyd_A 1 MD-KKSRVLIVGGTGYIGKRIVNASISLGH-------PTYVLFRPEVVSNIDKVQM-LLYFKQLGAKLIEASLDDHQRLV 71 (313)
T ss_dssp -C-CCCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCSCCSSCHHHHHH-HHHHHTTTCEEECCCSSCHHHHH
T ss_pred CC-CCCEEEEEcCCcHHHHHHHHHHHhCCC-------cEEEEECCCcccchhHHHH-HHHHHhCCeEEEeCCCCCHHHHH
Confidence 54 357899999999999999999999886 78888886421 11111 111211111 1123343334577
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhc
Q 020875 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~ 121 (320)
++++++|+||++++..... .|+...+++++.+++.+
T Consensus 72 ~~~~~~d~vi~~a~~~~~~---------~~~~~~~~l~~aa~~~g 107 (313)
T 1qyd_A 72 DALKQVDVVISALAGGVLS---------HHILEQLKLVEAIKEAG 107 (313)
T ss_dssp HHHTTCSEEEECCCCSSSS---------TTTTTHHHHHHHHHHSC
T ss_pred HHHhCCCEEEECCccccch---------hhHHHHHHHHHHHHhcC
Confidence 8899999999999864311 24556678888888764
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-07 Score=82.26 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=90.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccch---hHHHHHHHhcccCCCCcceEE-eCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA---LNGVKMELVDAAFPLLKGVVA-TTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~---~~~~~~dl~~~~~~~~~~v~~-~~~~~~al 79 (320)
+.++++||||+|+||.+++..|++.|. +|++.|++..... +.....|+.+.. .+.. .....+.+
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~Dv~d~~-----~v~~~~~~~~~~~ 94 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRNY-------RVVATSRSIKPSADPDIHTVAGDISKPE-----TADRIVREGIERF 94 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSCCCCSSTTEEEEESCTTSHH-----HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChhhcccCceEEEEccCCCHH-----HHHHHHHHHHHHC
Confidence 456899999999999999999999997 8999998642110 011112333221 0000 00112223
Q ss_pred CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 80 TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+ ++. ...++|++|+.... . ....+
T Consensus 95 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS~~~~------~-~~~~~ 165 (260)
T 3un1_A 95 GRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ--GSGHIVSITTSLVD------Q-PMVGM 165 (260)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCTTTT------S-CBTTC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEEechhhc------c-CCCCC
Confidence 48999999999754221 12 3446778887777666655 443 24677777754311 0 00111
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.-.|+.++.....+-+.+|+.+. +..|+.
T Consensus 166 ~~~~Y~~sKaa~~~l~~~la~e~~--~~gI~v 195 (260)
T 3un1_A 166 PSALASLTKGGLNAVTRSLAMEFS--RSGVRV 195 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTT--TTTEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhC--cCCeEE
Confidence 122455566666677777888874 456664
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.2e-07 Score=79.22 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=94.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCC---CCcceEEeCChhhh-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP---LLKGVVATTDAVEA- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~---~~~~v~~~~~~~~a- 78 (320)
+.++++||||+|.+|.+++..|++.|. +|++.+++. ++++....++... ... ...++....+..++
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~ 89 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGA-------RLVLSGRDV--SELDAARRALGEQFGTDVHTVAIDLAEPDAPAELA 89 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 346899999999999999999999987 899999864 3444333334321 100 11122222222222
Q ss_pred ------cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 79 ------CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 79 ------l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+ .+.. ..+++|++|+....
T Consensus 90 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~------ 162 (266)
T 4egf_A 90 RRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAG-EGGAIITVASAAAL------ 162 (266)
T ss_dssp HHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGT------
T ss_pred HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEEcchhhc------
Confidence 347899999999754221 12 2345677877655555544 4433 34678888765421
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+|+.+. +..|+.
T Consensus 163 ---~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gI~v 196 (266)
T 4egf_A 163 ---APLPDHYAYCTSKAGLVMATKVLARELG--PHGIRA 196 (266)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---cCCCCChHHHHHHHHHHHHHHHHHHHHh--hhCeEE
Confidence 2333333567776666677777887764 345653
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=98.48 E-value=6.4e-07 Score=80.12 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=94.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
+.++++||||+|.+|.+++..|++.|. .|++.++++ +.++....++...... ...++....+..+.+
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 101 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGA-------QVAVAARHS--DALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLD 101 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 447899999999999999999999987 899999874 4444444444332111 112222222233333
Q ss_pred ------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 80 ------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+. +.. ...++|++++....
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~~g~iv~isS~~~~------- 173 (276)
T 3r1i_A 102 QMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQG-LGGTIITTASMSGH------- 173 (276)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGT-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEECchHhc-------
Confidence 37899999999754221 12 23456778776665555543 332 23677777764321
Q ss_pred HCCCCCCC-cEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAK-NITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~-~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
....++. -.|+.++.....+-+.+|+.++ +..|+.
T Consensus 174 -~~~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrv 209 (276)
T 3r1i_A 174 -IINIPQQVSHYCTSKAAVVHLTKAMAVELA--PHQIRV 209 (276)
T ss_dssp -SCCCSSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -ccCCCCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1112212 2466666666677777888765 345653
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.3e-07 Score=79.61 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=91.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++++||||+|++|.+++..|++.|. +|++.++++ ++++....++...... ...++....+..+++
T Consensus 14 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (260)
T 2zat_A 14 NKVALVTASTDGIGLAIARRLAQDGA-------HVVVSSRKQ--ENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAM 84 (260)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 36899999999999999999999987 899999864 3333333333221100 011121111222222
Q ss_pred -----CCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 80 -----TGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+.|++|+.||.... + ..+ ..+.+..|+.....+.+.+ ++. ...++|++|+....
T Consensus 85 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS~~~~------- 155 (260)
T 2zat_A 85 AVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR--GGGSVLIVSSVGAY------- 155 (260)
T ss_dssp HHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCGGGT-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEechhhc-------
Confidence 379999999997421 1 112 3456778877776655554 333 23677888764321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 156 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 189 (260)
T 2zat_A 156 --HPFPNLGPYNVSKTALLGLTKNLAVELA--PRNIRV 189 (260)
T ss_dssp --SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1233333466666666677777777764 345653
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-07 Score=82.71 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHH---hcccC---CCCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL---VDAAF---PLLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl---~~~~~---~~~~~v~~~~~~~~ 77 (320)
+.++++||||+|++|.+++..|++.|. +|++.++++ ++++....++ ..... ....++....+..+
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 75 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFAREGA-------KVTITGRHA--ERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDE 75 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcccCCCceeEEecccCCHHHHHH
Confidence 456899999999999999999999987 899999863 3343333333 11000 00112221122333
Q ss_pred hcC-------CCcEEEEeCCCCCCCC---C----C---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcch-hhH
Q 020875 78 ACT-------GVNIAVMVGGFPRKEG---M----E---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPAN-TNA 138 (320)
Q Consensus 78 al~-------~aDvVi~~ag~~~~~~---~----~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~-~~~ 138 (320)
+++ +.|++|+.||...... . + ....+..|+.....+.+.+.+.-. ...++|++|+... .
T Consensus 76 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~-- 153 (278)
T 1spx_A 76 ILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGL-- 153 (278)
T ss_dssp HHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSS--
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEecccccc--
Confidence 343 8999999998743210 1 2 234577887777666666554310 1257888876432 1
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|..-.|+.++.....+-+.++..+.
T Consensus 154 -------~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 181 (278)
T 1spx_A 154 -------HATPDFPYYSIAKAAIDQYTRNTAIDLI 181 (278)
T ss_dssp -------SCCTTSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred -------cCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1223222456666656666666776653
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=8.6e-07 Score=80.05 Aligned_cols=157 Identities=10% Similarity=0.114 Sum_probs=96.0
Q ss_pred CCCEEEEEcCCC--hhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cC--CCCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF--PLLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~--~~~~~v~~~~~~~~a 78 (320)
+.++++||||+| .+|.+++..|++.|. +|++.|+++. ..+ ...++... .. ....+++...+..++
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-------~V~~~~r~~~--~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 98 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-------EVALTYLSET--FKK-RVDPLAESLGVKLTVPCDVSDAESVDNM 98 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-------EEEEEESSGG--GHH-HHHHHHHHHTCCEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-------EEEEEeCChH--HHH-HHHHHHHhcCCeEEEEcCCCCHHHHHHH
Confidence 346899999987 999999999999987 8999998742 111 11111111 00 011122222222222
Q ss_pred -------cCCCcEEEEeCCCCCC-----C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 79 -------CTGVNIAVMVGGFPRK-----E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 79 -------l~~aDvVi~~ag~~~~-----~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
+...|++|+.||+... + ..+ ....+..|+.....+.+.+...-...+++|++|+....
T Consensus 99 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~----- 173 (296)
T 3k31_A 99 FKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAE----- 173 (296)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT-----
T ss_pred HHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhc-----
Confidence 2468999999997531 1 122 34567889999998988887764345678888764321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+|..++ +..|+.
T Consensus 174 ----~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gIrv 207 (296)
T 3k31_A 174 ----KVVPHYNVMGVCKAALEASVKYLAVDLG--KQQIRV 207 (296)
T ss_dssp ----SCCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred ----cCCCCchhhHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1233333566666666677777887775 345663
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-06 Score=84.20 Aligned_cols=118 Identities=17% Similarity=0.241 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc--CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-------------Ccc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-------------LKG 68 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~--~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-------------~~~ 68 (320)
++|||+|+| +|.+|..++..|++. |+ +|+++|+++ ++++. +.....+. ...
T Consensus 8 ~~mkI~VIG-~G~vG~~~A~~La~~g~g~-------~V~~~D~~~--~~v~~----l~~g~~~i~e~gl~~~~~~~~~~~ 73 (481)
T 2o3j_A 8 KVSKVVCVG-AGYVGGPTCAMIAHKCPHI-------TVTVVDMNT--AKIAE----WNSDKLPIYEPGLDEIVFAARGRN 73 (481)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHHCTTS-------EEEEECSCH--HHHHH----HTSSSCSSCCTTHHHHHHHHBTTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCC-------EEEEEECCH--HHHHH----HHCCCCCcCCCCHHHHHHHhhcCC
Confidence 357999999 699999999999987 55 899999874 33332 22211110 124
Q ss_pred eEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEE-cCcchh
Q 020875 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPANT 136 (320)
Q Consensus 69 v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~-snP~~~ 136 (320)
++.+++..+++++||+||++.+.|...+.++.+ ...++..+.+.++.+.++..++..+|.. |+|.+.
T Consensus 74 l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt 141 (481)
T 2o3j_A 74 LFFSSDIPKAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKA 141 (481)
T ss_dssp EEEESCHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred EEEECCHHHHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCH
Confidence 677788778899999999998877543221111 1122334556666676665444444443 567654
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-07 Score=80.82 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=92.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChh----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV---- 76 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~---- 76 (320)
+.++++||||+|.+|.+++..|++.|. +|++.|+++ .+.....++...... ...++....+..
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 99 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAGA-------HVLAWGRTD---GVKEVADEIADGGGSAEAVVADLADLEGAANVAE 99 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESST---HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCHH---HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 346899999999999999999999987 899999642 233333333322110 011111111111
Q ss_pred --hhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 77 --EACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 77 --~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+.+...|++|+.||...... .+ ....+..|+.....+.+.+ ++.. .+++|++|+....
T Consensus 100 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~-------- 169 (273)
T 3uf0_A 100 ELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG--SGRIVTIASMLSF-------- 169 (273)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT--------
T ss_pred HHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchHhc--------
Confidence 12247899999999754211 12 3346778877766666654 4443 4678888865421
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 170 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 203 (273)
T 3uf0_A 170 -QGGRNVAAYAASKHAVVGLTRALASEWA--GRGVGV 203 (273)
T ss_dssp -SCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -CCCCCChhHHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1233323566666666677777887764 345653
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-07 Score=80.54 Aligned_cols=155 Identities=10% Similarity=0.049 Sum_probs=93.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEec-CCccchhHHHHHHHhcc-cC---CCCcceEEe----CChh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI-PPAAEALNGVKMELVDA-AF---PLLKGVVAT----TDAV 76 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~-~~~~~~~~~~~~dl~~~-~~---~~~~~v~~~----~~~~ 76 (320)
++++||||+|++|.+++..|++.|. +|++.++ ++ ++++....++... .. ....++... .+..
T Consensus 12 k~~lVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 82 (276)
T 1mxh_A 12 PAAVITGGARRIGHSIAVRLHQQGF-------RVVVHYRHSE--GAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCE 82 (276)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCCh--HHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHH
Confidence 5799999999999999999999987 8999998 53 3343333333221 10 011222222 1222
Q ss_pred hhc-------CCCcEEEEeCCCCCCCC-----------------CCHHHHHHhhHHHHHHHHHHHhhhcC-CC------e
Q 020875 77 EAC-------TGVNIAVMVGGFPRKEG-----------------MERKDVMSKNVSIYKAQASALEQHAA-PN------C 125 (320)
Q Consensus 77 ~al-------~~aDvVi~~ag~~~~~~-----------------~~r~~~~~~n~~~~~~i~~~i~~~~~-~~------~ 125 (320)
+++ ...|++|+.||...... .+....+..|+.....+.+.+.++-. .. .
T Consensus 83 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g 162 (276)
T 1mxh_A 83 DIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNL 162 (276)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCE
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 222 37899999999743211 11234678888888888887776421 12 6
Q ss_pred EEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 126 ~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
++|++|+.... .+.|..-.|+.++.....+-+.+++.+. +..|+
T Consensus 163 ~iv~isS~~~~---------~~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~ 206 (276)
T 1mxh_A 163 SVVNLCDAMTD---------LPLPGFCVYTMAKHALGGLTRAAALELA--PRHIR 206 (276)
T ss_dssp EEEEECCGGGG---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred EEEEECchhhc---------CCCCCCeehHHHHHHHHHHHHHHHHHHh--hcCeE
Confidence 78888765422 1233333566666666667777777764 33455
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.8e-08 Score=81.32 Aligned_cols=143 Identities=14% Similarity=0.117 Sum_probs=88.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC---CC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---GV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~---~a 82 (320)
|+|+||||+|++|++++..|+++ +|+++++++ +++.....++.. .....++....+..++++ +.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---------~V~~~~r~~--~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~i 67 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---------DLLLSGRRA--GALAELAREVGA--RALPADLADELEAKALLEEAGPL 67 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---------EEEEECSCH--HHHHHHHHHHTC--EECCCCTTSHHHHHHHHHHHCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---------CEEEEECCH--HHHHHHHHhccC--cEEEeeCCCHHHHHHHHHhcCCC
Confidence 57999999999999999998775 378888863 333322222211 111122222223445555 89
Q ss_pred cEEEEeCCCCCCC------CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe
Q 020875 83 NIAVMVGGFPRKE------GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 83 DvVi~~ag~~~~~------~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~ 156 (320)
|+||++||..... ..+....+..|+.....+.+.+++.. ..++|++|+.... .+.++...|+.
T Consensus 68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~iv~~sS~~~~---------~~~~~~~~Y~~ 136 (207)
T 2yut_A 68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQK--GARAVFFGAYPRY---------VQVPGFAAYAA 136 (207)
T ss_dssp EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEE--EEEEEEECCCHHH---------HSSTTBHHHHH
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcC--CcEEEEEcChhhc---------cCCCCcchHHH
Confidence 9999999875321 12345678899999999999985542 3577777764321 12233335666
Q ss_pred ehhhHHHHHHHHHHHc
Q 020875 157 TRLDHNRALGQISEKL 172 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l 172 (320)
++.....+-..+++.+
T Consensus 137 sK~a~~~~~~~~~~~~ 152 (207)
T 2yut_A 137 AKGALEAYLEAARKEL 152 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666677765
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-07 Score=81.55 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=88.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE-ecCCccchhHHHHHHHhcccCC----CCcceEEeCChhhh--
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFP----LLKGVVATTDAVEA-- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~-D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~~~~~~~a-- 78 (320)
++|+||||+|++|.+++..|++.|. +|++. ++++ ++++....++...... ...++....+..++
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G~-------~v~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDGF-------ALAIHYGQNR--EKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVH 72 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEESSCH--HHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHH
Confidence 4899999999999999999999886 78877 6653 3333222233221100 00111111122222
Q ss_pred -----cCCCcEEEEeCCCCCCC---CC---CHHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKE---GM---ERKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~---~~---~r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+.+.|+||+.||..... .. +..+.+..|+.. ++.+.+.+++.. ..++|++|+....
T Consensus 73 ~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~------- 143 (245)
T 2ph3_A 73 QAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR--FGRIVNITSVVGI------- 143 (245)
T ss_dssp HHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH-------
T ss_pred HHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC--CCEEEEEeChhhc-------
Confidence 34799999999975321 11 234567788877 556666666553 3678888764321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
. +.|....|+.++.....+...+++.+. +..++.
T Consensus 144 ~--~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 177 (245)
T 2ph3_A 144 L--GNPGQANYVASKAGLIGFTRAVAKEYA--QRGITV 177 (245)
T ss_dssp H--CCSSBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred c--CCCCCcchHHHHHHHHHHHHHHHHHHH--HcCeEE
Confidence 1 223222456666555566666777663 234553
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-07 Score=84.74 Aligned_cols=151 Identities=15% Similarity=0.071 Sum_probs=87.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-----CCCcceEEeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-----PLLKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-----~~~~~v~~~~~~~~al 79 (320)
.++|+||||+|+||.+++..|+++|. .|++.+++. ++++....++..... ....++....+..+++
T Consensus 8 ~k~vlVTGas~gIG~~la~~l~~~G~-------~Vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~ 78 (319)
T 3ioy_A 8 GRTAFVTGGANGVGIGLVRQLLNQGC-------KVAIADIRQ--DSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAA 78 (319)
T ss_dssp TCEEEEETTTSTHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEcCCchHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHH
Confidence 45899999999999999999999997 899999874 344433333322110 0111222212222233
Q ss_pred -------CCCcEEEEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHHHhhhc--------CCCeEEEEEcCcchhhH
Q 020875 80 -------TGVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQHA--------APNCKVLVVANPANTNA 138 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~i~~~~--------~~~~~viv~snP~~~~~ 138 (320)
...|++|+.||+..... .+..+.+..|+.....+.+.+.... ...+++|++|+-...
T Consensus 79 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~-- 156 (319)
T 3ioy_A 79 DEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAF-- 156 (319)
T ss_dssp HHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGT--
T ss_pred HHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccc--
Confidence 36799999999743211 1234567788777666665554431 124577877765432
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|..-.|+.++.....+-..++..+.
T Consensus 157 -------~~~~~~~~Y~aSKaal~~~~~~la~e~~ 184 (319)
T 3ioy_A 157 -------LAAGSPGIYNTTKFAVRGLSESLHYSLL 184 (319)
T ss_dssp -------CCCSSSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred -------cCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 1223222455555544445555555553
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.2e-07 Score=82.72 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=90.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC---ccchhHHHHHHHhcccC---CCCcceEEeCC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP---AAEALNGVKMELVDAAF---PLLKGVVATTD 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~---~~~~~~~~~~dl~~~~~---~~~~~v~~~~~ 74 (320)
|+++.++++||||+|++|.+++..|++.|. .|++.+++. +.++++.....+..... ....+++...+
T Consensus 1 M~m~~k~vlVTGas~GIG~aia~~L~~~G~-------~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~ 73 (324)
T 3u9l_A 1 MVMSKKIILITGASSGFGRLTAEALAGAGH-------RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVS 73 (324)
T ss_dssp ----CCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHH
Confidence 676777899999999999999999999997 788776642 11222222111111110 01122222223
Q ss_pred hhhhcC-------CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhh
Q 020875 75 AVEACT-------GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 75 ~~~al~-------~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~ 137 (320)
..++++ ..|++|+.||+..... .+ ....+..|+.....+.+.+ ++.. .+.+|++|+....
T Consensus 74 v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~--~g~iV~isS~~~~- 150 (324)
T 3u9l_A 74 VDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK--HGLLIWISSSSSA- 150 (324)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEecchhc-
Confidence 333443 8999999999753211 12 3346788888777776666 5543 4678888764321
Q ss_pred HHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
....|..-.|+.++.....+-..++..+. +..|+.
T Consensus 151 -------~~~~~~~~~Y~asKaa~~~~~~~la~el~--~~gI~v 185 (324)
T 3u9l_A 151 -------GGTPPYLAPYFAAKAAMDAIAVQYARELS--RWGIET 185 (324)
T ss_dssp -------SCCCSSCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred -------cCCCCcchhHHHHHHHHHHHHHHHHHHhh--hhCcEE
Confidence 01112112466666666666666777653 345553
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.9e-07 Score=80.22 Aligned_cols=149 Identities=14% Similarity=0.107 Sum_probs=86.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc--cCC---CCcceEEeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--AFP---LLKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~--~~~---~~~~v~~~~~~~~al 79 (320)
.++++||||+|.+|.+++..|++.|. +|++.++++ ++++....++... ... ...++....+..+++
T Consensus 13 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 83 (267)
T 1iy8_A 13 DRVVLITGGGSGLGRATAVRLAAEGA-------KLSLVDVSS--EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYV 83 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHH
Confidence 46899999999999999999999987 899999864 3333333333221 100 011221111222233
Q ss_pred -------CCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 80 -------TGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
...|++|+.||.... + ..+ ....+..|+.... .+++.+++.. ..++|++|+....
T Consensus 84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~----- 156 (267)
T 1iy8_A 84 TATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG--SGMVVNTASVGGI----- 156 (267)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT-----
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhc-----
Confidence 368999999997532 1 112 3345667775444 5555665543 3678888765321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|..-.|+.++.....+-+.+++.+.
T Consensus 157 ----~~~~~~~~Y~asK~a~~~~~~~la~e~~ 184 (267)
T 1iy8_A 157 ----RGIGNQSGYAAAKHGVVGLTRNSAVEYG 184 (267)
T ss_dssp ----SBCSSBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ----cCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 1223222455565555566666777664
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-06 Score=76.37 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=91.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
+.++++||||+|.+|.+++..|++.|. +|++.++++ ++++....++...... ...++....+..++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 90 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLGA-------RVYTCSRNE--KELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQ 90 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 346899999999999999999999987 899999864 3333333333221100 01122111122222
Q ss_pred -----c-CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 79 -----C-TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 79 -----l-~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
+ ...|++|+.||..... ..+ ....+..|+.....+.+.+ ++.. ..++|++|+....
T Consensus 91 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~------ 162 (273)
T 1ae1_A 91 TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ--NGNVIFLSSIAGF------ 162 (273)
T ss_dssp HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--SEEEEEECCGGGT------
T ss_pred HHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHhhc------
Confidence 2 5789999999975321 112 3345667877766666655 3432 4678888865421
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|..-.|+.++.....+-+.+++.+. +..|+
T Consensus 163 ---~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 195 (273)
T 1ae1_A 163 ---SALPSVSLYSASKGAINQMTKSLACEWA--KDNIR 195 (273)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred ---CCCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcE
Confidence 1233333466666656667677777763 34455
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=82.71 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=71.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--------------CcceEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--------------LKGVVA 71 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v~~ 71 (320)
|||+|+| +|.+|..++..|++.|+ +|.++|+++ ++++. +.....+. ...+..
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~-------~V~~~d~~~--~~~~~----l~~~~~~i~e~~l~~~~~~~~~~g~l~~ 66 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGH-------EVIGVDVSS--TKIDL----INQGKSPIVEPGLEALLQQGRQTGRLSG 66 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHTTCCSSCCTTHHHHHHHHHHTTCEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHH----HhCCCCCcCCCCHHHHHHhhcccCceEE
Confidence 6899999 69999999999999887 899999874 33332 22111110 124777
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCC---CeEEEEE-cCcchh
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP---NCKVLVV-ANPANT 136 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~---~~~viv~-snP~~~ 136 (320)
+++..+++++||+||++...+...... .+...+.+.++.+.++..+ +..+|.. |+|.+.
T Consensus 67 t~~~~~~~~~aDvviiaVptp~~~~~~------~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~ 129 (436)
T 1mv8_A 67 TTDFKKAVLDSDVSFICVGTPSKKNGD------LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT 129 (436)
T ss_dssp ESCHHHHHHTCSEEEECCCCCBCTTSS------BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred eCCHHHHhccCCEEEEEcCCCcccCCC------cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence 788878899999999998766532221 1222334444555444324 4555554 577655
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.4e-07 Score=79.48 Aligned_cols=157 Identities=17% Similarity=0.109 Sum_probs=89.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA----- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a----- 78 (320)
+.++++||||+|.+|.+++..|++.|. +|++.++++ ++++....++.........++....+..++
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREGA-------SLVAVDREE--RLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEAL 75 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999987 899999863 333322222210000001122111122222
Q ss_pred --cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCC
Q 020875 79 --CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (320)
Q Consensus 79 --l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~ 150 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+..+-....++|++|+....-..-
T Consensus 76 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 145 (263)
T 2a4k_A 76 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFG---------- 145 (263)
T ss_dssp HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHH----------
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCCCC----------
Confidence 235799999998753211 12 234678899888888888776531246788887654320000
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...|+.++.....+-+.++..+. +..|+.
T Consensus 146 ~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 174 (263)
T 2a4k_A 146 LAHYAAGKLGVVGLARTLALELA--RKGVRV 174 (263)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHT--TTTCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHhh--hhCcEE
Confidence 01233444444455566666664 345553
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=5.8e-07 Score=79.71 Aligned_cols=118 Identities=17% Similarity=0.095 Sum_probs=72.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-C----CCCcceEEeCChhhhc-
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-F----PLLKGVVATTDAVEAC- 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~----~~~~~v~~~~~~~~al- 79 (320)
++++||||+|++|.+++..|++.|. +|++.+++. +++.....++.... . ....++....+..+++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (267)
T 2gdz_A 8 KVALVTGAAQGIGRAFAEALLLKGA-------KVALVDWNL--EAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFR 78 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHH
Confidence 5899999999999999999999987 899999863 33332222332210 0 0011221111222222
Q ss_pred ------CCCcEEEEeCCCCCCCCCCHHHHHHhhHH----HHHHHHHHHhhhcC-CCeEEEEEcCcc
Q 020875 80 ------TGVNIAVMVGGFPRKEGMERKDVMSKNVS----IYKAQASALEQHAA-PNCKVLVVANPA 134 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~~~~r~~~~~~n~~----~~~~i~~~i~~~~~-~~~~viv~snP~ 134 (320)
...|++|+.||... ..+..+.+..|+. .++.+++.+++... +..++|++|+..
T Consensus 79 ~~~~~~g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~ 142 (267)
T 2gdz_A 79 KVVDHFGRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA 142 (267)
T ss_dssp HHHHHHSCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred HHHHHcCCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCcc
Confidence 35799999999753 2345667777866 55666777765431 146788887643
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=7.3e-07 Score=78.76 Aligned_cols=155 Identities=11% Similarity=0.065 Sum_probs=91.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccch-hHHHHHHHhcc-cC---CCCcceEEeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEA-LNGVKMELVDA-AF---PLLKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~-~~~~~~dl~~~-~~---~~~~~v~~~~~~~~al 79 (320)
.++++||||+|++|.+++..|++.|. +|++.++++ +. ++....++... .. ....++....+..+++
T Consensus 4 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 74 (260)
T 1x1t_A 4 GKVAVVTGSTSGIGLGIATALAAQGA-------DIVLNGFGD--AAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLV 74 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEECCSC--HHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHcCC-------EEEEEeCCc--chHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999999987 899999874 23 33322233211 10 0111222212222223
Q ss_pred -------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 80 -------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+ ++.. ..++|++|+....
T Consensus 75 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------ 146 (260)
T 1x1t_A 75 DNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGL------ 146 (260)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEECcHHhC------
Confidence 37899999999754211 12 3446777877555555444 4432 3678888865421
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 147 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 180 (260)
T 1x1t_A 147 ---VASANKSAYVAAKHGVVGFTKVTALETA--GQGITA 180 (260)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEE
T ss_pred ---cCCCCCchHHHHHHHHHHHHHHHHHHhc--cCCEEE
Confidence 1233333466666666667777777764 345653
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-07 Score=85.62 Aligned_cols=150 Identities=15% Similarity=0.070 Sum_probs=88.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-----C---CCcceEEeCChh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-----P---LLKGVVATTDAV 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-----~---~~~~v~~~~~~~ 76 (320)
.++|+||||+|++|++++..|++.|. +|++++++. ++++....++..... . ...++....+..
T Consensus 18 ~k~vlVTGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~ 88 (303)
T 1yxm_A 18 GQVAIVTGGATGIGKAIVKELLELGS-------NVVIASRKL--ERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 88 (303)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHH
Confidence 46899999999999999999999987 899999863 334433334432100 0 011221111222
Q ss_pred hhc-------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHH
Q 020875 77 EAC-------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALIL 141 (320)
Q Consensus 77 ~al-------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~ 141 (320)
+++ ...|+||+.||...... .+ ....+..|+.....+++.+.+.. ....++|++|+.. .
T Consensus 89 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~----- 162 (303)
T 1yxm_A 89 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-K----- 162 (303)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-T-----
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-c-----
Confidence 333 35899999999643211 12 23457889888888887765420 0136778777653 1
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|..-.++.++.....+-+.+++.+.
T Consensus 163 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 190 (303)
T 1yxm_A 163 ----AGFPLAVHSGAARAGVYNLTKSLALEWA 190 (303)
T ss_dssp ----TCCTTCHHHHHHHHHHHHHHHHHHHHTG
T ss_pred ----cCCCcchhhHHHHHHHHHHHHHHHHHhc
Confidence 1223222345555545556666777663
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.9e-07 Score=79.69 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=93.5
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc--c-CCCCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--A-FPLLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~--~-~~~~~~v~~~~~~~~a 78 (320)
+.++++||||+ |++|.+++..|++.|. +|++.++++ + ......++... . .....++....+..++
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-------~V~~~~r~~--~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 89 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGA-------QLAFTYATP--K-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNL 89 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-------EEEEEESSG--G-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-------EEEEEeCCH--H-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHH
Confidence 34689999998 9999999999999986 899999864 1 22122222211 0 0011122221222222
Q ss_pred c-------CCCcEEEEeCCCCCC-----C--CCC---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcchhhHHH
Q 020875 79 C-------TGVNIAVMVGGFPRK-----E--GME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALI 140 (320)
Q Consensus 79 l-------~~aDvVi~~ag~~~~-----~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~~~~~~ 140 (320)
+ ...|++|+.||.... + ..+ ....+..|+.....+.+.+.+.-. ...++|++|+....
T Consensus 90 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~---- 165 (285)
T 2p91_A 90 KKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAE---- 165 (285)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGT----
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhc----
Confidence 2 378999999997532 1 112 345678899988888888877631 23678888763321
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|....|+.++.....+-+.+++.+. +..|+
T Consensus 166 -----~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~ 198 (285)
T 2p91_A 166 -----KVVPHYNVMGIAKAALESTVRYLAYDIA--KHGHR 198 (285)
T ss_dssp -----SBCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTCE
T ss_pred -----cCCCCccHHHHHHHHHHHHHHHHHHHhc--ccCcE
Confidence 1223333466666666667677777763 33454
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-07 Score=83.30 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=91.6
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a 78 (320)
+.++++||||+ |++|.+++..|++.|. +|++.++++. ......++..... ....++....+..++
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-------~V~~~~r~~~---~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~ 76 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-------EVALSYQAER---LRPEAEKLAEALGGALLFRADVTQDEELDAL 76 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHHTC-------EEEEEESCGG---GHHHHHHHHHHTTCCEEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEcCCHH---HHHHHHHHHHhcCCcEEEECCCCCHHHHHHH
Confidence 34689999998 9999999999999987 8999998641 2212222221100 011122211222233
Q ss_pred c-------CCCcEEEEeCCCCCC-----C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 79 C-------TGVNIAVMVGGFPRK-----E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 79 l-------~~aDvVi~~ag~~~~-----~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
+ ...|++|+.||.... + ..+ ....+..|+.....+.+.+.+.-.+.+++|++|+....
T Consensus 77 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~----- 151 (261)
T 2wyu_A 77 FAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE----- 151 (261)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEeccccc-----
Confidence 3 378999999997531 1 112 34567889999999988887753123578888753321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|....|+.++.....+-+.+++.+.
T Consensus 152 ----~~~~~~~~Y~asK~a~~~~~~~la~e~~ 179 (261)
T 2wyu_A 152 ----KVVPKYNVMAIAKAALEASVRYLAYELG 179 (261)
T ss_dssp ----SBCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 1223223466666666667777777763
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-07 Score=84.64 Aligned_cols=101 Identities=13% Similarity=0.126 Sum_probs=64.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhc--CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCCc
Q 020875 7 RVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~--~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~aD 83 (320)
||+||||+|++|++++..|++. |+ +|+++++++. +... +.+... ....++....++.++++++|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~-------~V~~~~r~~~--~~~~----~~~~~~~~~~~D~~d~~~~~~~~~~~d 67 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS-------QIVAIVRNPA--KAQA----LAAQGITVRQADYGDEAALTSALQGVE 67 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG-------GEEEEESCTT--TCHH----HHHTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc-------eEEEEEcChH--hhhh----hhcCCCeEEEcCCCCHHHHHHHHhCCC
Confidence 5899999999999999999987 76 7898998642 2221 111110 01122222235677889999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+|||+|+... ..|+...+++++.+++.+ . .++|++|.
T Consensus 68 ~vi~~a~~~~----------~~~~~~~~~l~~a~~~~~-~-~~~v~~Ss 104 (286)
T 2zcu_A 68 KLLLISSSEV----------GQRAPQHRNVINAAKAAG-V-KFIAYTSL 104 (286)
T ss_dssp EEEECC------------------CHHHHHHHHHHHHT-C-CEEEEEEE
T ss_pred EEEEeCCCCc----------hHHHHHHHHHHHHHHHcC-C-CEEEEECC
Confidence 9999998531 146778899999998875 2 35666654
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.3e-07 Score=78.52 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=95.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE-ecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~-D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al 79 (320)
+.++++||||+|.+|.+++..|++.|. +|++. ++++ +.++....++...... ...+++...+..+++
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 77 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA-------NVVLTYNGAA--EGAATAVAEIEKLGRSALAIKADLTNAAEVEAAI 77 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECSSC--HHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 346899999999999999999999987 78887 4432 3333333334322111 112222222222333
Q ss_pred -------CCCcEEEEeCCCCC--CC--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 80 -------TGVNIAVMVGGFPR--KE--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~--~~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
...|++|+.||... .+ ..+ ....+..|+.....+.+.+...-.+.+++|++|+.... .
T Consensus 78 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~-------~- 149 (259)
T 3edm_A 78 SAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGR-------D- 149 (259)
T ss_dssp HHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH-------H-
T ss_pred HHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhc-------c-
Confidence 37899999998642 11 122 24567899999999988887764234578888764321 0
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCC
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNV 174 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v 174 (320)
.+.+..-.|+.++.-...+-+.+|..++-
T Consensus 150 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~ 178 (259)
T 3edm_A 150 GGGPGALAYATSKGAVMTFTRGLAKEVGP 178 (259)
T ss_dssp CCSTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHCC
Confidence 23333335777777777788888888864
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=7.2e-07 Score=79.87 Aligned_cols=158 Identities=13% Similarity=0.056 Sum_probs=94.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChh----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV---- 76 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~---- 76 (320)
+.++++||||+|++|.+++..|++.|. +|++.+++.. +.++....++...... ...++....+..
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 99 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGC-------KVIVNYANST-ESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFE 99 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCch-HHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHH
Confidence 346899999999999999999999987 8999998642 1222222223221100 011111111121
Q ss_pred ---hhcCCCcEEEEeCCCCCCCC------CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 77 ---EACTGVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 77 ---~al~~aDvVi~~ag~~~~~~------~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+.+...|++|+.||...... ++....+..|+.....+.+.+.++-....++|++|+-... .+
T Consensus 100 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---------~~ 170 (283)
T 1g0o_A 100 EAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ---------AK 170 (283)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT---------CS
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhc---------cC
Confidence 22347899999999753211 1234568899999888888887762134678888764321 12
Q ss_pred CCC-CcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 148 IPA-KNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 148 ~~~-~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.++ .-.|+.++.....+-+.+++.+. +..|+
T Consensus 171 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 202 (283)
T 1g0o_A 171 AVPKHAVYSGSKGAIETFARCMAIDMA--DKKIT 202 (283)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence 222 22466666666667677777664 33454
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=77.50 Aligned_cols=159 Identities=16% Similarity=0.091 Sum_probs=95.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
+.++++||||+|.+|.+++..|++.|. .|++.+.+. .+.++....++...... ...++....+..+.
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~-------~Vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 97 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGF-------TVVINYAGK-AAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFA 97 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTC-------EEEEEESSC-SHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEcCCC-HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 346799999999999999999999987 787775432 23333333333322111 01122211122222
Q ss_pred -----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 79 -----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+.+.-.+.+++|++|+.... .+
T Consensus 98 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~ 168 (267)
T 3u5t_A 98 TAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVG---------LL 168 (267)
T ss_dssp HHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHH---------HC
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhc---------cC
Confidence 237899999999753211 12 33467789988888887776653234678888764321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|..-.|+.++.....+-+.+|+.++ +..|+.
T Consensus 169 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 200 (267)
T 3u5t_A 169 HPSYGIYAAAKAGVEAMTHVLSKELR--GRDITV 200 (267)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTT--TSCCEE
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhh--hhCCEE
Confidence 33333567777777778888888875 445653
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-07 Score=83.76 Aligned_cols=152 Identities=11% Similarity=0.063 Sum_probs=87.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEec-CCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI-PPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~-~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al 79 (320)
+.++|+||||+|++|++++..|++.|. +|++.++ ++ +.+.....++...... ...++....+..+++
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 76 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATEKA-------KVVVNYRSKE--DEANSVLEEIKKVGGEAIAVKGDVTVESDVINLV 76 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEcCCCh--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 346899999999999999999999886 8999998 42 3333222233221100 011111111222233
Q ss_pred -------CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEEcCcchhhHHHHHH
Q 020875 80 -------TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+.|+||+.||..... ..+ ..+.+..|+.....+.+.+.+.. .+..++|++|+....
T Consensus 77 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~------- 149 (261)
T 1gee_A 77 QSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK------- 149 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT-------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhc-------
Confidence 3789999999975321 112 23466778777666555544331 124678888764321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+....|+.++.....+-..+++.+.
T Consensus 150 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 177 (261)
T 1gee_A 150 --IPWPLFVHYAASKGGMKLMTETLALEYA 177 (261)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred --CCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 1233333566666666666666777763
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=98.43 E-value=7.3e-07 Score=79.33 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=96.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++||||+|.+|.+++..|++.|. +|++.+++. .+.++....++...... ...++....+..++
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 89 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGA-------KVVVNYANS-TKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQ 89 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 36899999999999999999999997 788877653 23333333333322111 01122211122222
Q ss_pred ----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 79 ----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+.++-.+.+++|++|+.... ..+.
T Consensus 90 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~--------~~~~ 161 (270)
T 3is3_A 90 AVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSK--------DFSV 161 (270)
T ss_dssp HHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTT--------TCCC
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhc--------cCCC
Confidence 237899999999753211 12 34567889888888888877764345678888764311 1123
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
|..-.|+.++.-...+-+.+++.++ +..|+
T Consensus 162 ~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~ 191 (270)
T 3is3_A 162 PKHSLYSGSKGAVDSFVRIFSKDCG--DKKIT 191 (270)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence 3333567777666677777888775 33455
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=8e-07 Score=78.64 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=89.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE---- 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~---- 77 (320)
.++++||||+|.+|.+++..|++.|. +|++.+++. ++++....++...... ...++....+..+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLATALRLAEEGT-------AIALLDMNR--EALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDS 77 (262)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46899999999999999999999987 899999863 3343333333321100 0112211111222
Q ss_pred ---hcCCCcEEEEeCCCC-CC-C--CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHC
Q 020875 78 ---ACTGVNIAVMVGGFP-RK-E--GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 78 ---al~~aDvVi~~ag~~-~~-~--~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.+...|++|+.||.. .. + ..+ ....+..|+.....+.+.+.++- ....++|++|+....
T Consensus 78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~--------- 148 (262)
T 1zem_A 78 VVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGV--------- 148 (262)
T ss_dssp HHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH---------
T ss_pred HHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc---------
Confidence 233789999999875 21 1 112 23456778776666665554431 023678888764311
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 149 ~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 182 (262)
T 1zem_A 149 KGPPNMAAYGTSKGAIIALTETAALDLA--PYNIRV 182 (262)
T ss_dssp SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHH--hhCeEE
Confidence 1223222456665555566666777664 345653
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=8.6e-07 Score=79.45 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=89.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++|+||||+|++|.+++..|+++|. +|+++++++ ++++....++...... ...++....+..++
T Consensus 44 ~k~vlITGasggIG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 114 (285)
T 2c07_A 44 NKVALVTGAGRGIGREIAKMLAKSVS-------HVICISRTQ--KSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINK 114 (285)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSS-------EEEEEESSH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999886 788888753 3333333333321110 01122111122222
Q ss_pred ----cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 79 ----CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+.+.|+||+.||..... ..+ ..+.+..|+.....+.+.+ ++.. ..++|++|+.... .
T Consensus 115 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~-------~ 185 (285)
T 2c07_A 115 ILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGL-------T 185 (285)
T ss_dssp HHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH-------H
T ss_pred HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhc-------c
Confidence 24789999999975321 112 3356778887755554444 3432 3678888765321 1
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.+..-.|+.++.....+-..+++.+. +..|+.
T Consensus 186 --~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 218 (285)
T 2c07_A 186 --GNVGQANYSSSKAGVIGFTKSLAKELA--SRNITV 218 (285)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHH--HhCcEE
Confidence 223223456666655566666776663 334553
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.3e-07 Score=82.72 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=83.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~aD 83 (320)
+|||+|||| |++|++++..|+++|+ +|+.+++++ ++... +..... ....++ +++ + ++++|
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~-------~V~~~~r~~--~~~~~----~~~~~~~~~~~D~---~d~-~-~~~~d 65 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGW-------RIIGTSRNP--DQMEA----IRASGAEPLLWPG---EEP-S-LDGVT 65 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTC-------EEEEEESCG--GGHHH----HHHTTEEEEESSS---SCC-C-CTTCC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCC-------EEEEEEcCh--hhhhh----HhhCCCeEEEecc---ccc-c-cCCCC
Confidence 479999997 9999999999999887 899999864 22221 111110 000111 122 2 78999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEeehh
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLTRL 159 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~t~l 159 (320)
+|||+|+.... .. +..+++++.+++.+..-.++|.+|.. .+... .+.+ .....+...++.++.
T Consensus 66 ~vi~~a~~~~~--~~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~-~vyg~~~~~~~~E-~~~~~p~~~Y~~sK~ 132 (286)
T 3ius_A 66 HLLISTAPDSG--GD---------PVLAALGDQIAARAAQFRWVGYLSTT-AVYGDHDGAWVDE-TTPLTPTAARGRWRV 132 (286)
T ss_dssp EEEECCCCBTT--BC---------HHHHHHHHHHHHTGGGCSEEEEEEEG-GGGCCCTTCEECT-TSCCCCCSHHHHHHH
T ss_pred EEEECCCcccc--cc---------HHHHHHHHHHHhhcCCceEEEEeecc-eecCCCCCCCcCC-CCCCCCCCHHHHHHH
Confidence 99999986431 11 23466777777742111356666532 21100 0000 001112223455555
Q ss_pred hHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 160 DHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 160 d~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
...++...+ .+++..-++...|+|...
T Consensus 133 ~~E~~~~~~---~~~~~~ilRp~~v~G~~~ 159 (286)
T 3ius_A 133 MAEQQWQAV---PNLPLHVFRLAGIYGPGR 159 (286)
T ss_dssp HHHHHHHHS---TTCCEEEEEECEEEBTTB
T ss_pred HHHHHHHhh---cCCCEEEEeccceECCCc
Confidence 444432222 388888888888889653
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=9.3e-07 Score=78.67 Aligned_cols=120 Identities=19% Similarity=0.153 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
+.++|+||||+|++|.+++..|++.|. +|+++|+++ +.++....++...... ...++....+..++
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 100 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLKS-------KLVLWDINK--HGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAK 100 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEEcCH--HHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHH
Confidence 346899999999999999999999986 899999864 3333333333221100 01122111122222
Q ss_pred -----cCCCcEEEEeCCCCCCCCC------CHHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcc
Q 020875 79 -----CTGVNIAVMVGGFPRKEGM------ERKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPA 134 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~~------~r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~ 134 (320)
+.+.|+||+.||....... +..+.+..|+.....+.+.+ ++. ...++|++|+..
T Consensus 101 ~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~~iv~isS~~ 169 (272)
T 1yb1_A 101 KVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASAA 169 (272)
T ss_dssp HHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC
T ss_pred HHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEechh
Confidence 2378999999997542211 12346777877755544444 443 246788887653
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.4e-07 Score=77.87 Aligned_cols=157 Identities=11% Similarity=0.029 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC 79 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al 79 (320)
.+.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++...... ...+++...+..+++
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-------TVFAGRRNG--EKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFL 75 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHH
Confidence 3457899999999999999999999997 899999874 4454444444322110 111222222223333
Q ss_pred C------CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 80 T------GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 80 ~------~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+ ..|++|+.||...... .+ ....+..|+.....+.+. +++.. .+++|++|+....
T Consensus 76 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~------- 146 (252)
T 3h7a_A 76 NAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG--QGKIFFTGATASL------- 146 (252)
T ss_dssp HHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGT-------
T ss_pred HHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHHc-------
Confidence 3 6799999999754211 12 234567777665555444 45443 4678888754321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.....+-+.+++.++ +..|+.
T Consensus 147 --~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 180 (252)
T 3h7a_A 147 --RGGSGFAAFASAKFGLRAVAQSMARELM--PKNIHV 180 (252)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCCccHHHHHHHHHHHHHHHHHHhh--hcCCEE
Confidence 2233333466666666677777887765 345664
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.2e-07 Score=79.81 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=87.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhH---HHHHHHhcccCCCCcceE-EeCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN---GVKMELVDAAFPLLKGVV-ATTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~---~~~~dl~~~~~~~~~~v~-~~~~~~~al~ 80 (320)
.++|+||||+|++|.+++..|++.|. +|++.+++++ +++ +...|+.+... +. ......+.+.
T Consensus 15 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~D~~~~~~-----~~~~~~~~~~~~g 80 (247)
T 1uzm_A 15 SRSVLVTGGNRGIGLAIAQRLAADGH-------KVAVTHRGSG--APKGLFGVEVDVTDSDA-----VDRAFTAVEEHQG 80 (247)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSSC--CCTTSEEEECCTTCHHH-----HHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChH--HHHHhcCeeccCCCHHH-----HHHHHHHHHHHcC
Confidence 46899999999999999999999986 8999998642 222 11233333210 00 0001122234
Q ss_pred CCcEEEEeCCCCCCC---CC---CHHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHCCCCCCCc
Q 020875 81 GVNIAVMVGGFPRKE---GM---ERKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFAPSIPAKN 152 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~---~~---~r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~~~~~~~~ 152 (320)
..|++|+.||..... .. +....+..|+.....+.+.+.++- ....++|++|+..... +.|...
T Consensus 81 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------~~~~~~ 151 (247)
T 1uzm_A 81 PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW---------GIGNQA 151 (247)
T ss_dssp SCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC--------------CCH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhcc---------CCCCCh
Confidence 689999999975321 11 234567788877766666554321 1246788887654221 122222
Q ss_pred EEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 153 ITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 153 i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|+.++.....+-+.+++.+. +..|+.
T Consensus 152 ~Y~~sK~a~~~~~~~la~e~~--~~gi~v 178 (247)
T 1uzm_A 152 NYAASKAGVIGMARSIARELS--KANVTA 178 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 455565555566666777764 345653
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-06 Score=78.26 Aligned_cols=160 Identities=14% Similarity=0.076 Sum_probs=94.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc----------cchhHHHHHHHhcccCC---CCcceE
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA----------AEALNGVKMELVDAAFP---LLKGVV 70 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~----------~~~~~~~~~dl~~~~~~---~~~~v~ 70 (320)
+.++++||||+|.+|.+++..|++.|. +|+++|++.+ .+.++....++...... ...++.
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 81 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA-------DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVR 81 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTT
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCC
Confidence 346899999999999999999999997 8999998621 12222222223221110 011222
Q ss_pred EeCChhhhc-------CCCcEEEEeCCCCCCC----CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH
Q 020875 71 ATTDAVEAC-------TGVNIAVMVGGFPRKE----GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL 139 (320)
Q Consensus 71 ~~~~~~~al-------~~aDvVi~~ag~~~~~----~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~ 139 (320)
...+..+.+ ...|++|+.||..... .++..+.+..|+.....+.+.+..+-...+++|++|+.......
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~ 161 (287)
T 3pxx_A 82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAA 161 (287)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccc
Confidence 111222222 3789999999975422 12244678899999999999888764345678888764433221
Q ss_pred HHHHHCCCC-----CCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 140 ILKEFAPSI-----PAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 140 ~~~~~~~~~-----~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
. . .+.. |..-.|+.++.-...+-+.+|+.++
T Consensus 162 ~--~-~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~ 197 (287)
T 3pxx_A 162 A--Q-PPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLA 197 (287)
T ss_dssp H--C-CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred c--c-cccccccCCCccchHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 0000 1111355566656667777777774
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.6e-07 Score=77.97 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=89.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++++||||+|++|.+++..|++.|. +|++.++.. .++++....++...... ...++....+..+++
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (246)
T 2uvd_A 4 GKVALVTGASRGIGRAIAIDLAKQGA-------NVVVNYAGN-EQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQ 75 (246)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999999987 899988731 23333333333221100 011222112222333
Q ss_pred -----CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 -----TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|++|+.||...... .+ ....+..|+.. ++.+.+.+++.. ..++|++|+.... .
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-------~ 146 (246)
T 2uvd_A 76 TVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR--HGRIVNIASVVGV-------T 146 (246)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHH-------H
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCHHhc-------C
Confidence 37999999999754211 12 33467788777 445555555543 3678888764321 1
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.|..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 147 --~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 179 (246)
T 2uvd_A 147 --GNPGQANYVAAKAGVIGLTKTSAKELA--SRNITV 179 (246)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 223222455555555556666676654 345653
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.6e-07 Score=82.64 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC------CCCcceEEeCChh
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF------PLLKGVVATTDAV 76 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~------~~~~~v~~~~~~~ 76 (320)
.+.++++||||+|++|.+++..|++.|. +|++.++++ ++++....++..... ....++....+..
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~ 94 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGA-------QVTITGRNE--DRLEETKQQILKAGVPAEKINAVVADVTEASGQD 94 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHH
Confidence 3456899999999999999999999987 899999864 334333333322110 0011221111222
Q ss_pred hhc-------CCCcEEEEeCCCCCCCC-----CC---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcchhhHHH
Q 020875 77 EAC-------TGVNIAVMVGGFPRKEG-----ME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALI 140 (320)
Q Consensus 77 ~al-------~~aDvVi~~ag~~~~~~-----~~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~~~~~~ 140 (320)
+++ ...|++|+.||...... .+ ....+..|+.....+.+.+.++-. ...++|++|+-...
T Consensus 95 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~---- 170 (297)
T 1xhl_A 95 DIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAG---- 170 (297)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGS----
T ss_pred HHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhc----
Confidence 222 37899999999753211 12 334677887777766666554310 12678888764321
Q ss_pred HHHHCCCC-CCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 141 LKEFAPSI-PAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 141 ~~~~~~~~-~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+. |..-.|+.++.....+-+.++..+. +..|+
T Consensus 171 -----~~~~~~~~~Y~asKaa~~~l~~~la~el~--~~gI~ 204 (297)
T 1xhl_A 171 -----PQAHSGYPYYACAKAALDQYTRCTAIDLI--QHGVR 204 (297)
T ss_dssp -----SSCCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred -----cCCCCCcchHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence 112 3222466666655566666776654 33454
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-07 Score=82.34 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=83.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA------ 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (320)
.++++||||+|++|.+++..|++.|. +|++.|+++ ++++....++.........++....+..++
T Consensus 6 ~k~vlVTGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (253)
T 1hxh_A 6 GKVALVTGGASGVGLEVVKLLLGEGA-------KVAFSDINE--AAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999987 899999863 333332222211000011122211122222
Q ss_pred -cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 79 -CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 79 -l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+...|++|+.||..... ..+ ....+..|+... +.+++.+++. . .++|++|+.... .+
T Consensus 77 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~-g~iv~isS~~~~---------~~ 144 (253)
T 1hxh_A 77 RLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--G-GSIINMASVSSW---------LP 144 (253)
T ss_dssp HHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--C-EEEEEECCGGGT---------SC
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHc--C-CEEEEEcchhhc---------CC
Confidence 33579999999975321 112 334567776644 4445555443 2 678888764321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.|..-.|+.++.....+-+.+++.+
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~la~e~ 169 (253)
T 1hxh_A 145 IEQYAGYSASKAAVSALTRAAALSC 169 (253)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHh
Confidence 2322245666655556666666665
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.9e-07 Score=78.96 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=90.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-------
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA------- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------- 78 (320)
++++||||+|.+|.+++..|++.|. +|++.++++ ++++....++.........++....+..++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 71 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-------KVIATGRRQ--ERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999986 899999863 333333222211000011122111122222
Q ss_pred cCCCcEEEEeCCCCC--CC--CCC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 79 CTGVNIAVMVGGFPR--KE--GME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 79 l~~aDvVi~~ag~~~--~~--~~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+...|++|+.||... .+ ..+ ....+..|+.....+.+.+. +.. ..++|++|+.... .+
T Consensus 72 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~---------~~ 140 (248)
T 3asu_A 72 WCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN--HGHIINIGSTAGS---------WP 140 (248)
T ss_dssp TCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT---------SC
T ss_pred CCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEccchhc---------cC
Confidence 236899999999752 11 112 33467788776555554443 432 3678888864421 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.|....|+.++.....+-+.++..+. +..|+..
T Consensus 141 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~ 173 (248)
T 3asu_A 141 YAGGNVYGATKAFVRQFSLNLRTDLH--GTAVRVT 173 (248)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTT--TSCCEEE
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhh--hcCcEEE
Confidence 33333566666666677777787764 4456533
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=6.5e-07 Score=78.48 Aligned_cols=156 Identities=14% Similarity=0.129 Sum_probs=94.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++++||||+|++|.+++..|++.|. +|++.+++. .++++....++...... ...++....+..+.+
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 75 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEGY-------NVAVNYAGS-KEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKE 75 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 35899999999999999999999997 788888753 23344333334322111 111222222222333
Q ss_pred -----CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 -----TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|++|+.||..... ..+ ....+..|+.....+.+.+ .+.. ..++|++|+-...
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~-------- 145 (246)
T 3osu_A 76 VVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR--SGAIINLSSVVGA-------- 145 (246)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH--------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhc--------
Confidence 3789999999975321 112 3346778887777766666 4443 4678888764321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.....+-+.+|+.+. +..|+.
T Consensus 146 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 179 (246)
T 3osu_A 146 -VGNPGQANYVATKAGVIGLTKSAARELA--SRGITV 179 (246)
T ss_dssp -HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -CCCCCChHHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1233333567777766677777887765 345653
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.41 E-value=5.1e-06 Score=72.43 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=93.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC----Ccce--EEeCChh--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----LKGV--VATTDAV-- 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~----~~~v--~~~~~~~-- 76 (320)
.++++||||+|.+|.+++..|++.|. +|++.++++ ++++....++.....+. ..++ ....+..
T Consensus 14 ~k~vlITGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~ 84 (247)
T 3i1j_A 14 GRVILVTGAARGIGAAAARAYAAHGA-------SVVLLGRTE--ASLAEVSDQIKSAGQPQPLIIALNLENATAQQYREL 84 (247)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEecCH--HHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHH
Confidence 46899999999999999999999987 899999874 34443333343221110 0111 1111111
Q ss_pred -----hhcCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHH
Q 020875 77 -----EACTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILK 142 (320)
Q Consensus 77 -----~al~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~ 142 (320)
+.+...|++|+.||...... .+ ....+..|+.....+.+.+...- ....++|++|+....
T Consensus 85 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~------ 158 (247)
T 3i1j_A 85 AARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGR------ 158 (247)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGT------
T ss_pred HHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhc------
Confidence 22347899999999742111 12 33456788777766666653221 134678887765421
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+++.+. ....|+.
T Consensus 159 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~-~~~~i~v 193 (247)
T 3i1j_A 159 ---KGRANWGAYGVSKFATEGLMQTLADELE-GVTAVRA 193 (247)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHT-TTSSEEE
T ss_pred ---CCCCCcchhHHHHHHHHHHHHHHHHHhc-CCCCeEE
Confidence 1233323566666666677777888774 2245653
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=8e-07 Score=79.82 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=67.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc----------cCC-----CCcc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA----------AFP-----LLKG 68 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~----------~~~-----~~~~ 68 (320)
+.+||+|+| +|.+|+.++..|+..|+ +|+++|+++ ++++.....+.+. ... ....
T Consensus 3 ~~~kV~VIG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~ 72 (283)
T 4e12_A 3 GITNVTVLG-TGVLGSQIAFQTAFHGF-------AVTAYDINT--DALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGG 72 (283)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSH--HHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcC
Confidence 356999999 59999999999999987 899999974 3333222211110 000 0123
Q ss_pred eEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 69 v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+..++++.+++++||+||.+... +.+..+.+.+.+.++.+++++++..|+
T Consensus 73 i~~~~~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~il~s~tS 122 (283)
T 4e12_A 73 IRYSDDLAQAVKDADLVIEAVPE--------------SLDLKRDIYTKLGELAPAKTIFATNSS 122 (283)
T ss_dssp CEEESCHHHHTTTCSEEEECCCS--------------CHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred eEEeCCHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 56677888889999999998631 123345566667776656665443333
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-06 Score=76.73 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=93.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC----CCcceEEeCChhhh-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTDAVEA- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~~~~~~~a- 78 (320)
+.++++||||+|++|.+++..|++.|. +|++.|++. .+.++....++...... ...++....+..++
T Consensus 24 ~~k~~lVTGas~GIG~~ia~~la~~G~-------~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 95 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGLAIARTLAKAGA-------NIVLNGFGA-PDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMM 95 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEECCCC-HHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-hHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHH
Confidence 346899999999999999999999997 899999843 23343333333322100 01122222222222
Q ss_pred ------cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 79 ------CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 79 ------l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+ ++.. .+++|++|+....
T Consensus 96 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------ 167 (281)
T 3v2h_A 96 AMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG--WGRIINIASAHGL------ 167 (281)
T ss_dssp HHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT------
T ss_pred HHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCcccc------
Confidence 337899999999754221 12 3346778877766666654 4442 4678888864421
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|..-.|+.++.-...+-+.+|+.++ +..|+
T Consensus 168 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~ 200 (281)
T 3v2h_A 168 ---VASPFKSAYVAAKHGIMGLTKTVALEVA--ESGVT 200 (281)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred ---cCCCCchHHHHHHHHHHHHHHHHHHHhh--hcCcE
Confidence 1233333566676666677777887764 33455
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.41 E-value=8.7e-07 Score=77.22 Aligned_cols=162 Identities=16% Similarity=0.170 Sum_probs=91.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc---
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC--- 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al--- 79 (320)
++|+||||+|++|.+++..|++.|....+....|++.+++. ++++....++...... ...++....+..+++
T Consensus 3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (244)
T 2bd0_A 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA--ADLEKISLECRAEGALTDTITADISDMADVRRLTTHI 80 (244)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH--HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH--HHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence 57999999999999999999988752101112688888863 3343333333221100 011121111222222
Q ss_pred ----CCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 80 ----TGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 80 ----~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
.+.|+||++||...... . +....+..|+.....+.+.+.++ . ...++|++|+.... .
T Consensus 81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~~~~---------~ 150 (244)
T 2bd0_A 81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVAAT---------K 150 (244)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT---------S
T ss_pred HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEecchhc---------C
Confidence 37999999999753211 1 23446777887777666665432 1 24678888765421 2
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.+....|+.++.....+-..++..+. +..++.
T Consensus 151 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 183 (244)
T 2bd0_A 151 AFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRI 183 (244)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEE
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh--ccCcEE
Confidence 233333566666666666666777654 345653
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-06 Score=78.43 Aligned_cols=160 Identities=17% Similarity=0.144 Sum_probs=92.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~ 77 (320)
|+.+.++|+||||+|.+|.+++..|++.|. +|++.+++. .+..+.....+...... ...++....+..+
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~-------~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 96 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGL-------KVWINYRSN-AEVADALKNELEEKGYKAAVIKFDAASESDFIE 96 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence 444557899999999999999999999987 899999853 22233222233222111 0112211112222
Q ss_pred hc-------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHH
Q 020875 78 AC-------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 78 al-------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
++ ...|++|+.||...... .+ ..+.+..|+.....+.+. +++.. ..++|++|+....
T Consensus 97 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~---- 170 (271)
T 4iin_A 97 AIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR--FGSVVNVASIIGE---- 170 (271)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH----
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC--CCEEEEEechhhc----
Confidence 22 37899999999754221 12 334567777666555444 44432 3678888764321
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+++.+. +..|+.
T Consensus 171 -----~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 204 (271)
T 4iin_A 171 -----RGNMGQTNYSASKGGMIAMSKSFAYEGA--LRNIRF 204 (271)
T ss_dssp -----HCCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred -----CCCCCchHhHHHHHHHHHHHHHHHHHHH--HhCcEE
Confidence 1233333567776666677777777764 335653
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=98.40 E-value=5.7e-07 Score=78.33 Aligned_cols=155 Identities=13% Similarity=0.085 Sum_probs=88.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEE-EecCCccchhHHHHHHHhcccC---CCCcceEEeCChhhhc--
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHM-LDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEAC-- 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l-~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~al-- 79 (320)
++|+||||+|++|.+++..|++.|. +|++ .++++ ++++....++..... ....++....+..+++
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G~-------~v~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAGC-------KVLVNYARSA--KAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKT 72 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999999987 7777 46653 333322223321110 0011221111223333
Q ss_pred -----CCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 80 -----TGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.+.|+||+.||...... . +..+.+..|+.....+.+.+.++ . ...++|++|+.... .
T Consensus 73 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~-------~- 143 (244)
T 1edo_A 73 AIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVGL-------I- 143 (244)
T ss_dssp HHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHH-------H-
T ss_pred HHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCEEEEECChhhc-------C-
Confidence 37899999999754211 1 23446778888766666665543 2 24678888764321 1
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.|..-.|+.++.....+-..+++.+. +..++.
T Consensus 144 -~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 176 (244)
T 1edo_A 144 -GNIGQANYAAAKAGVIGFSKTAAREGA--SRNINV 176 (244)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred -CCCCCccchhhHHHHHHHHHHHHHHhh--hcCCEE
Confidence 223223456665555556666676654 345553
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=9.2e-07 Score=79.79 Aligned_cols=156 Identities=14% Similarity=0.108 Sum_probs=94.6
Q ss_pred CCEEEEEcCCCh--hHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChhhh-
Q 020875 5 PVRVLVTGAAGQ--IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEA- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~--vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a- 78 (320)
.++++||||+|+ +|.+++..|++.|. .|++.++++. ......++..... ....++....+..+.
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~-------~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 100 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGA-------ELAFTYQGDA---LKKRVEPLAEELGAFVAGHCDVADAASIDAVF 100 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTC-------EEEEEECSHH---HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCC-------EEEEEcCCHH---HHHHHHHHHHhcCCceEEECCCCCHHHHHHHH
Confidence 358999999988 99999999999987 7999998631 1111112211100 011122211122222
Q ss_pred ------cCCCcEEEEeCCCCC-----CC--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 79 ------CTGVNIAVMVGGFPR-----KE--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 79 ------l~~aDvVi~~ag~~~-----~~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
+...|++|+.||... .+ ..+ ....+..|+.....+.+.+.++-...+++|++|+....
T Consensus 101 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~------ 174 (293)
T 3grk_A 101 ETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAE------ 174 (293)
T ss_dssp HHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGT------
T ss_pred HHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhc------
Confidence 347899999999753 11 112 33567889888888888877654345778888865421
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 175 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 208 (293)
T 3grk_A 175 ---KVMPNYNVMGVAKAALEASVKYLAVDLG--PQNIRV 208 (293)
T ss_dssp ---SBCTTTTHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---cCCCchHHHHHHHHHHHHHHHHHHHHHh--HhCCEE
Confidence 1233333567776666677777888775 345653
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.6e-07 Score=78.97 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=87.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH---HHHHHhcccCCCCcceEE-eCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG---VKMELVDAAFPLLKGVVA-TTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~---~~~dl~~~~~~~~~~v~~-~~~~~~al~ 80 (320)
.++|+||||+|.+|.+++..|++.|. +|++.+++++ +++. ...|+.+.. .+.. .....+.+.
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~Dl~d~~-----~v~~~~~~~~~~~g 86 (253)
T 2nm0_A 21 SRSVLVTGGNRGIGLAIARAFADAGD-------KVAITYRSGE--PPEGFLAVKCDITDTE-----QVEQAYKEIEETHG 86 (253)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSSC--CCTTSEEEECCTTSHH-----HHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCChH--hhccceEEEecCCCHH-----HHHHHHHHHHHHcC
Confidence 46899999999999999999999986 8999998642 2221 112333221 0000 001122234
Q ss_pred CCcEEEEeCCCCCC------CCCCHHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCcchhhHHHHHHHCCCCCCC
Q 020875 81 GVNIAVMVGGFPRK------EGMERKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEFAPSIPAK 151 (320)
Q Consensus 81 ~aDvVi~~ag~~~~------~~~~r~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP~~~~~~~~~~~~~~~~~~ 151 (320)
..|++|+.||.... ..++..+.+..|+.....+.+.+.+. . ...++|++|+-..... .|..
T Consensus 87 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~---------~~~~ 156 (253)
T 2nm0_A 87 PVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLISSVVGLLG---------SAGQ 156 (253)
T ss_dssp SCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCCCCCCC---------HHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECchhhCCC---------CCCc
Confidence 57999999997532 12334567788887776666544332 1 2467888876432210 0000
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
-.|+.++.....+-+.+++.++ +..|+.
T Consensus 157 ~~Y~asK~a~~~~~~~la~e~~--~~gi~v 184 (253)
T 2nm0_A 157 ANYAASKAGLVGFARSLARELG--SRNITF 184 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--SSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1234444445566666777765 456663
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=9.8e-07 Score=85.16 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--------------Ccce
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--------------LKGV 69 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v 69 (320)
..|||+|+| +|++|..++..|++.|+ +|.++|+++ ++++. +.....+. ...+
T Consensus 7 ~~~~I~VIG-~G~vG~~lA~~la~~G~-------~V~~~d~~~--~~v~~----l~~~~~~i~e~gl~~~l~~~~~~~~l 72 (478)
T 2y0c_A 7 GSMNLTIIG-SGSVGLVTGACLADIGH-------DVFCLDVDQ--AKIDI----LNNGGVPIHEPGLKEVIARNRSAGRL 72 (478)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHTTCCSSCCTTHHHHHHHHHHTTCE
T ss_pred CCceEEEEC-cCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHH----HHCCCCCcCCCCHHHHHHHhcccCCE
Confidence 368999999 69999999999999987 899999974 33332 22211110 1247
Q ss_pred EEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 70 ~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
+.+++..+++++||+||++...|.+...+ .+...++++++.+.++..++..++..|
T Consensus 73 ~~ttd~~~a~~~aDvviiaVptp~~~~~~------~dl~~v~~v~~~i~~~l~~~~iVV~~S 128 (478)
T 2y0c_A 73 RFSTDIEAAVAHGDVQFIAVGTPPDEDGS------ADLQYVLAAARNIGRYMTGFKVIVDKS 128 (478)
T ss_dssp EEECCHHHHHHHCSEEEECCCCCBCTTSS------BCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred EEECCHHHHhhcCCEEEEEeCCCcccCCC------ccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 88888888899999999998776533221 233455666677776654555555444
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.9e-07 Score=80.06 Aligned_cols=151 Identities=16% Similarity=0.122 Sum_probs=88.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++|+||||+|++|.+++..|++.|. +|++.++++ ++++....++...... ...++....+..++
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 99 (262)
T 3rkr_A 29 GQVAVVTGASRGIGAAIARKLGSLGA-------RVVLTARDV--EKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATG 99 (262)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHH
Confidence 46899999999999999999999987 899999874 4444443344322110 01122111122222
Q ss_pred ----cCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHC
Q 020875 79 ----CTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
+...|+||+.||.....+ .+ ..+.+..|+.....+.+.+...- ...+++|++|+....
T Consensus 100 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~--------- 170 (262)
T 3rkr_A 100 VLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGK--------- 170 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSS---------
T ss_pred HHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhc---------
Confidence 346899999999732111 12 23466778777666666543310 134678888765421
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+..-.|+.++.-...+-..+++.+.
T Consensus 171 ~~~~~~~~Y~asKaa~~~l~~~la~e~~ 198 (262)
T 3rkr_A 171 NPVADGAAYTASKWGLNGLMTSAAEELR 198 (262)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 1223223466666655666667777764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=78.38 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=92.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++||||+|.+|.+++..|++.|. +|++.+++.. ...+.....+...... ...++....+..++
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 118 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGA-------NIAIAYLDEE-GDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQE 118 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCH-HHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCch-HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 36899999999999999999999997 8999998742 1122111112211100 01122111122222
Q ss_pred ----cCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 79 ----CTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+.++-.+..++|++|+-... .+
T Consensus 119 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~---------~~ 189 (291)
T 3ijr_A 119 TVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAY---------EG 189 (291)
T ss_dssp HHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHH---------HC
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhc---------CC
Confidence 337899999998743211 12 34578899999999999887764334577777754321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+..-.|+.++.-...+-+.+|+.+.
T Consensus 190 ~~~~~~Y~asKaa~~~l~~~la~e~~ 215 (291)
T 3ijr_A 190 NETLIDYSATKGAIVAFTRSLSQSLV 215 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHh
Confidence 23223466666666677777777764
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-06 Score=75.51 Aligned_cols=159 Identities=13% Similarity=0.079 Sum_probs=94.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-ccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-AAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
.++++||||+|.+|.+++..|++.|. .|++.++.. +.+.++....++...... ...++....+..+.+
T Consensus 11 ~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 83 (262)
T 3ksu_A 11 NKVIVIAGGIKNLGALTAKTFALESV-------NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFD 83 (262)
T ss_dssp TCEEEEETCSSHHHHHHHHHHTTSSC-------EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 36899999999999999999999987 788887642 223333333344322111 112222222222222
Q ss_pred ------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 80 ------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+..+-.+.+++|++++..... +
T Consensus 84 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~---------~ 154 (262)
T 3ksu_A 84 FAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA---------Y 154 (262)
T ss_dssp HHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH---------H
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc---------C
Confidence 37899999999754221 12 334677899888888888876532346788887654221 1
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+..-.|+.++.....+-+.+|+.++ +..|+.
T Consensus 155 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 186 (262)
T 3ksu_A 155 TGFYSTYAGNKAPVEHYTRAASKELM--KQQISV 186 (262)
T ss_dssp HCCCCC-----CHHHHHHHHHHHHTT--TTTCEE
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHH--HcCcEE
Confidence 12223578887777788888888875 345553
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.2e-07 Score=81.07 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=94.8
Q ss_pred CC-CCCCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-c-C-CCCcceEEeCC
Q 020875 1 MA-KEPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-A-F-PLLKGVVATTD 74 (320)
Q Consensus 1 m~-~~~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~-~-~~~~~v~~~~~ 74 (320)
|. .+.++++||||+ |++|.+++..|++.|. +|++.++++. ......++... . . ....++....+
T Consensus 1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~-------~V~~~~r~~~---~~~~~~~l~~~~~~~~~~~~D~~~~~~ 70 (275)
T 2pd4_A 1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-------TLAFTYLNES---LEKRVRPIAQELNSPYVYELDVSKEEH 70 (275)
T ss_dssp -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-------EEEEEESSTT---THHHHHHHHHHTTCCCEEECCTTCHHH
T ss_pred CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEeCCHH---HHHHHHHHHHhcCCcEEEEcCCCCHHH
Confidence 54 345689999998 9999999999999986 8999998742 22122222211 0 0 01112221112
Q ss_pred hhhh-------cCCCcEEEEeCCCCCC-----C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh
Q 020875 75 AVEA-------CTGVNIAVMVGGFPRK-----E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 75 ~~~a-------l~~aDvVi~~ag~~~~-----~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~ 137 (320)
..++ +...|++|+.||.... + ..+ ....+..|+.....+.+.+.+.-.+.+++|++|+....
T Consensus 71 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~- 149 (275)
T 2pd4_A 71 FKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGST- 149 (275)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-
T ss_pred HHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhc-
Confidence 2222 2367999999997532 1 112 34567889999999988887763123678888764321
Q ss_pred HHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|....|+.++.....+-+.+++.+. +..|+
T Consensus 150 --------~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 182 (275)
T 2pd4_A 150 --------KYMAHYNVMGLAKAALESAVRYLAVDLG--KHHIR 182 (275)
T ss_dssp --------SBCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTCE
T ss_pred --------CCCCCchhhHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence 1233323466666666667777777764 33454
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.6e-08 Score=86.79 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-c---cchhHHHHHHHhcccCC-CCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-A---AEALNGVKMELVDAAFP-LLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-~---~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a 78 (320)
++|||+|+||+|++|++++..|+..|+ +|++++++. + .++... ..++...... ...++....++.++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~~~~-l~~~~~~~v~~v~~D~~d~~~l~~a 74 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSH-------PTFIYARPLTPDSTPSSVQL-REEFRSMGVTIIEGEMEEHEKMVSV 74 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTC-------CEEEEECCCCTTCCHHHHHH-HHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCC-------cEEEEECCcccccChHHHHH-HHHhhcCCcEEEEecCCCHHHHHHH
Confidence 467999999999999999999999886 788888864 1 111111 1112111111 11233333357788
Q ss_pred cCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhc
Q 020875 79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~ 121 (320)
++++|+||++++... +...+++++.+++.+
T Consensus 75 ~~~~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g 104 (321)
T 3c1o_A 75 LKQVDIVISALPFPM-------------ISSQIHIINAIKAAG 104 (321)
T ss_dssp HTTCSEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred HcCCCEEEECCCccc-------------hhhHHHHHHHHHHhC
Confidence 999999999987532 233467777777764
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.39 E-value=7.3e-07 Score=78.78 Aligned_cols=159 Identities=8% Similarity=0.055 Sum_probs=90.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
.+++++||||+|++|.+++..|++.|. +|++.+++. .+..+.....+...... ...++....+..+++
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 77 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGY-------SVTVTYHSD-TTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVE 77 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCC-------EEEEEcCCC-hHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 356899999999999999999999987 788887753 22222211111111100 011222112222333
Q ss_pred ------CCCcEEEEeCCC--CCC-C--CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHH
Q 020875 80 ------TGVNIAVMVGGF--PRK-E--GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 80 ------~~aDvVi~~ag~--~~~-~--~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
...|++|+.||. ... + ..+ ..+.+..|+.....+.+.+ ++.. ..++|++|.....
T Consensus 78 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~iss~~~~----- 150 (264)
T 3i4f_A 78 EAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN--FGRIINYGFQGAD----- 150 (264)
T ss_dssp HHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTTGG-----
T ss_pred HHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CCeEEEEeechhc-----
Confidence 378999999994 211 1 112 2345778877776666665 5543 4678887754110
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
. ..+++..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 151 -~-~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 186 (264)
T 3i4f_A 151 -S-APGWIYRSAFAAAKVGLVSLTKTVAYEEA--EYGITA 186 (264)
T ss_dssp -G-CCCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -c-cCCCCCCchhHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 0 12344333566666666667777777754 345553
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.6e-07 Score=80.47 Aligned_cols=157 Identities=11% Similarity=0.158 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---C---CCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---P---LLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~---~~~~v~~~~~~~~ 77 (320)
+.++++||||+|++|.+++..|++.|. +|++.++++ ++++....++..... . ...++....+..+
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 75 (280)
T 1xkq_A 5 SNKTVIITGSSNGIGRTTAILFAQEGA-------NVTITGRSS--ERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQ 75 (280)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHH
Confidence 456899999999999999999999987 899999864 334333333322110 0 0112211112222
Q ss_pred hc-------CCCcEEEEeCCCCCCCC-------CC---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcchhhHH
Q 020875 78 AC-------TGVNIAVMVGGFPRKEG-------ME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNAL 139 (320)
Q Consensus 78 al-------~~aDvVi~~ag~~~~~~-------~~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~~~~~ 139 (320)
++ ...|++|+.||...... .+ ....+..|+.....+.+.+..+-. ...++|++|+....
T Consensus 76 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~--- 152 (280)
T 1xkq_A 76 IINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAG--- 152 (280)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGS---
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCcccc---
Confidence 22 36899999999753211 12 334677888777777666554310 11578888764321
Q ss_pred HHHHHCCCC-CCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 140 ILKEFAPSI-PAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 140 ~~~~~~~~~-~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+. |..-.|+.++.....+-+.++..+. +..|+
T Consensus 153 ------~~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 186 (280)
T 1xkq_A 153 ------PQAQPDFLYYAIAKAALDQYTRSTAIDLA--KFGIR 186 (280)
T ss_dssp ------SSCCCSSHHHHHHHHHHHHHHHHHHHHHH--TTTCE
T ss_pred ------CCCCCcccHHHHHHHHHHHHHHHHHHHhc--cCCeE
Confidence 122 3223466666655666666776653 33455
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.6e-07 Score=79.56 Aligned_cols=164 Identities=13% Similarity=0.132 Sum_probs=95.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-c----hhHHHHHHHhcccCC---CCcceEEe
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-E----ALNGVKMELVDAAFP---LLKGVVAT 72 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-~----~~~~~~~dl~~~~~~---~~~~v~~~ 72 (320)
|+.+.++++||||+|.+|.+++..|+++|. +|++.+++... + .++....++...... ...+++..
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 77 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGA-------NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDG 77 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTC-------EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence 455567999999999999999999999987 89999987531 0 122222233221100 01122111
Q ss_pred CChhhh-------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhh
Q 020875 73 TDAVEA-------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTN 137 (320)
Q Consensus 73 ~~~~~a-------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~ 137 (320)
.+..+. +...|++|+.||..... ..+ ....+..|+.....+.+.+...-. ..+++|++|+.....
T Consensus 78 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 157 (285)
T 3sc4_A 78 DAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLE 157 (285)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCS
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhcc
Confidence 122222 33799999999975321 122 234667898888888887766521 236788887654221
Q ss_pred HHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.++..-.|+.++.....+-+.+|+.++ +..|+.
T Consensus 158 --------~~~~~~~~Y~asKaal~~~~~~la~e~~--~~gI~v 191 (285)
T 3sc4_A 158 --------PKWLRPTPYMMAKYGMTLCALGIAEELR--DAGIAS 191 (285)
T ss_dssp --------GGGSCSHHHHHHHHHHHHHHHHHHHHTG--GGTCEE
T ss_pred --------CCCCCCchHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 0112222455665555667777777764 345553
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=78.22 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=88.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhh-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEA----- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~a----- 78 (320)
.++++||||+|.||.+++..|++.|. +|++.+++. ++++. +..... ....++....+..++
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~----~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFSEEGH-------PLLLLARRV--ERLKA----LNLPNTLCAQVDVTDKYTFDTAITRAE 82 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCH--HHHHT----TCCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHH----hhcCCceEEEecCCCHHHHHHHHHHHH
Confidence 35799999999999999999999987 799999863 22221 110000 000111111122222
Q ss_pred --cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 --CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 --l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~----~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+...|++|+.||..... ..+ ....+..|+.....+. +.+++.. .+++|++|+.... .
T Consensus 83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~IV~isS~~~~---------~ 151 (266)
T 3p19_A 83 KIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN--CGTIINISSIAGK---------K 151 (266)
T ss_dssp HHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT---------S
T ss_pred HHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhC---------C
Confidence 33789999999975321 122 3345778877766644 4444443 3678888764421 2
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+.|..-.|+.++.....+-+.+++.++ +..|+
T Consensus 152 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 183 (266)
T 3p19_A 152 TFPDHAAYCGTKFAVHAISENVREEVA--ASNVR 183 (266)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhc--ccCcE
Confidence 333333566676666677777777765 33455
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=78.35 Aligned_cols=158 Identities=13% Similarity=0.157 Sum_probs=88.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc---
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC--- 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al--- 79 (320)
++++||||+|.+|.+++..|++.|. +|++.|++. .+.++....++...... ...++....+..+++
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 101 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGF-------DIAITGIGD-AEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAV 101 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCC-HHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-------eEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 5789999999999999999999987 899998642 23344333344322111 112222222333333
Q ss_pred ----CCCcEEEEeCCCC--CC-C--CCC---HHHHHHhhHHHHHHHHHH----HhhhcC-CCeEEEEEcCcchhhHHHHH
Q 020875 80 ----TGVNIAVMVGGFP--RK-E--GME---RKDVMSKNVSIYKAQASA----LEQHAA-PNCKVLVVANPANTNALILK 142 (320)
Q Consensus 80 ----~~aDvVi~~ag~~--~~-~--~~~---r~~~~~~n~~~~~~i~~~----i~~~~~-~~~~viv~snP~~~~~~~~~ 142 (320)
...|++|+.||.. .. + ..+ ....+..|+.....+.+. +.+... ..+++|++|+.....
T Consensus 102 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~----- 176 (280)
T 4da9_A 102 VAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM----- 176 (280)
T ss_dssp HHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC---------
T ss_pred HHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc-----
Confidence 3789999999973 11 1 112 334566787766555544 443321 146788887644221
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+.|..-.|+.++.-...+-+.+|+.+. +..|+..
T Consensus 177 ----~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn 210 (280)
T 4da9_A 177 ----TSPERLDYCMSKAGLAAFSQGLALRLA--ETGIAVF 210 (280)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEE
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHHH--HhCcEEE
Confidence 222222466666666677777888875 4566643
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.4e-07 Score=79.57 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=89.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--CCCCcceEEeCChhhhcC---
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FPLLKGVVATTDAVEACT--- 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~~~~~~v~~~~~~~~al~--- 80 (320)
++++||||+|.+|.+++..|++.|. +|++.++++ ++++....++.... .....++....+..++++
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 92 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW-------SLVLTGRRE--ERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLP 92 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999987 899999863 34443333332210 000112222222233333
Q ss_pred ----CCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 81 ----GVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 81 ----~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
..|++|+.||.... + ..+ ....+..|+.... .+++.+++.. ...++|++|+-...
T Consensus 93 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~~IV~isS~~~~--------- 162 (272)
T 2nwq_A 93 EEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHG-AGASIVNLGSVAGK--------- 162 (272)
T ss_dssp GGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGT---------
T ss_pred HHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeCCchhc---------
Confidence 45999999997532 1 112 3345677877644 4455555543 22278888764321
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.|..-.|+.++.....+-+.++..+. +..|+..
T Consensus 163 ~~~~~~~~Y~asKaa~~~l~~~la~el~--~~gIrvn 197 (272)
T 2nwq_A 163 WPYPGSHVYGGTKAFVEQFSLNLRCDLQ--GTGVRVT 197 (272)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHTTCT--TSCCEEE
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhC--ccCeEEE
Confidence 1233223456665555566666766653 4556643
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-07 Score=84.59 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=61.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-c---c-chhHHHHHHHhcccCC-CCcceEEeCChhhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-A---A-EALNGVKMELVDAAFP-LLKGVVATTDAVEA 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-~---~-~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a 78 (320)
++||+|+||+|++|++++..|++.|+ +|++++++. . . +++.. ..++.+.... ...++....++.++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~R~~~~~~~~~~~~~~-~~~l~~~~v~~v~~D~~d~~~l~~~ 73 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN-------PTYALVRKTITAANPETKEEL-IDNYQSLGVILLEGDINDHETLVKA 73 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC-------CEEEEECCSCCSSCHHHHHHH-HHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC-------cEEEEECCCcccCChHHHHHH-HHHHHhCCCEEEEeCCCCHHHHHHH
Confidence 56899999999999999999999886 688888864 1 0 22211 1122211111 11233333356788
Q ss_pred cCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhc
Q 020875 79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~ 121 (320)
++++|+||++++... +...+++++.+++.+
T Consensus 74 ~~~~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g 103 (307)
T 2gas_A 74 IKQVDIVICAAGRLL-------------IEDQVKIIKAIKEAG 103 (307)
T ss_dssp HTTCSEEEECSSSSC-------------GGGHHHHHHHHHHHC
T ss_pred HhCCCEEEECCcccc-------------cccHHHHHHHHHhcC
Confidence 999999999998542 123466777777764
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-07 Score=84.89 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=62.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc----chhHHHHHHHhcccCC-CCcceEEeCCh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA----EALNGVKMELVDAAFP-LLKGVVATTDA 75 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~----~~~~~~~~dl~~~~~~-~~~~v~~~~~~ 75 (320)
|+ +++||+|+||+|++|++++..|++.|+ +|++++++... ++.. ....+...... ...++....++
T Consensus 1 M~-~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~l~R~~~~~~~~~~~~-~~~~l~~~~v~~v~~D~~d~~~l 71 (308)
T 1qyc_A 1 MG-SRSRILLIGATGYIGRHVAKASLDLGH-------PTFLLVRESTASSNSEKAQ-LLESFKASGANIVHGSIDDHASL 71 (308)
T ss_dssp -C-CCCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCCCCTTTTHHHHH-HHHHHHTTTCEEECCCTTCHHHH
T ss_pred CC-CCCEEEEEcCCcHHHHHHHHHHHhCCC-------CEEEEECCcccccCHHHHH-HHHHHHhCCCEEEEeccCCHHHH
Confidence 54 357899999999999999999999886 78888886421 1111 01112111111 11233333356
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhc
Q 020875 76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~ 121 (320)
.++++++|+||++++... +...+++++.+++.+
T Consensus 72 ~~~~~~~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g 104 (308)
T 1qyc_A 72 VEAVKNVDVVISTVGSLQ-------------IESQVNIIKAIKEVG 104 (308)
T ss_dssp HHHHHTCSEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred HHHHcCCCEEEECCcchh-------------hhhHHHHHHHHHhcC
Confidence 788899999999987532 123466778887764
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=78.13 Aligned_cols=156 Identities=14% Similarity=0.099 Sum_probs=94.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++||||+|.+|.+++..|++.|. +|++.++++ ++++....++...... ...++....+..++
T Consensus 24 ~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 94 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLAARGI-------AVYGCARDA--KNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAA 94 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 35799999999999999999999987 899999864 4444444444332111 01122211122222
Q ss_pred ----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhh-----cCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 ----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQH-----AAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~-----~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+...|++|+.||...... .+ ..+.+..|+.....+.+.+.+. . ..+++|++|+....
T Consensus 95 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~~g~iV~isS~~~~------- 166 (279)
T 3sju_A 95 AVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREA-GWGRIVNIASTGGK------- 166 (279)
T ss_dssp HHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHH-TCEEEEEECCGGGT-------
T ss_pred HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhc-CCcEEEEECChhhc-------
Confidence 336899999999754211 12 3346778888877777765431 2 24678888865421
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+-+.+|..++ +..|+.
T Consensus 167 --~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 200 (279)
T 3sju_A 167 --QGVMYAAPYTASKHGVVGFTKSVGFELA--KTGITV 200 (279)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE
T ss_pred --cCCCCChhHHHHHHHHHHHHHHHHHHHH--hhCcEE
Confidence 1233323466666666677777887765 345653
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=77.40 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=93.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-----------ccchhHHHHHHHhcccCCC---CcceE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-----------AAEALNGVKMELVDAAFPL---LKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-----------~~~~~~~~~~dl~~~~~~~---~~~v~ 70 (320)
.++++||||+|.+|.+++..|++.|. +|+++|++. +.+.++.....+....... ..++.
T Consensus 11 ~k~~lVTGas~GIG~a~a~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 83 (277)
T 3tsc_A 11 GRVAFITGAARGQGRAHAVRMAAEGA-------DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTR 83 (277)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCC-------EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 46899999999999999999999997 899998731 1233333222332211110 11221
Q ss_pred EeCChhhh-------cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCc
Q 020875 71 ATTDAVEA-------CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANP 133 (320)
Q Consensus 71 ~~~~~~~a-------l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP 133 (320)
...+..+. +...|++|+.||...... .+ ....+..|+.....+.+. +.+.. ..+++|++|+.
T Consensus 84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~ 162 (277)
T 3tsc_A 84 DFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGG-RGGSIILISSA 162 (277)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CCCEEEEEccH
Confidence 11122222 346899999999754321 12 234577787665555554 55543 35788888865
Q ss_pred chhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
... .+.|..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 163 ~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 199 (277)
T 3tsc_A 163 AGM---------KMQPFMIHYTASKHAVTGLARAFAAELG--KHSIRV 199 (277)
T ss_dssp GGT---------SCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred hhC---------CCCCCchhhHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 421 2233323467776666677777888875 445653
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.2e-07 Score=80.47 Aligned_cols=160 Identities=13% Similarity=0.121 Sum_probs=90.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~al~ 80 (320)
+.++|+||||+|++|++++..|+++|+ +|++++++. .++++....++..... ....++....+..++++
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G~-------~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAGA-------KVGLHGRKA-PANIDETIASMRADGGDAAFFAADLATSEACQQLVD 77 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-CTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEECCCc-hhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 346899999999999999999999987 899999862 1333332233322110 00112221122333343
Q ss_pred -------CCcEEEEeCCC-CCCC---CCC---HHHHHHhhHHHHHHHHHHHhh----hc---CCCeEEEEEcCcchhhHH
Q 020875 81 -------GVNIAVMVGGF-PRKE---GME---RKDVMSKNVSIYKAQASALEQ----HA---APNCKVLVVANPANTNAL 139 (320)
Q Consensus 81 -------~aDvVi~~ag~-~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~----~~---~~~~~viv~snP~~~~~~ 139 (320)
+.|+||+.||. .... ..+ ....+..|+.....+.+.+.+ .. .+..++|++|+....
T Consensus 78 ~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~--- 154 (258)
T 3afn_B 78 EFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGH--- 154 (258)
T ss_dssp HHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHH---
T ss_pred HHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhc---
Confidence 89999999986 3211 112 234567787776666654432 21 122567777653211
Q ss_pred HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
. .+.|+...|+.++.....+...+++.++ +..|+.
T Consensus 155 --~---~~~~~~~~Y~~sK~a~~~~~~~~~~e~~--~~gi~v 189 (258)
T 3afn_B 155 --T---GGGPGAGLYGAAKAFLHNVHKNWVDFHT--KDGVRF 189 (258)
T ss_dssp --H---CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --c---CCCCCchHHHHHHHHHHHHHHHHHHhhc--ccCeEE
Confidence 0 1233333567776666677777777763 334553
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=78.74 Aligned_cols=158 Identities=13% Similarity=0.075 Sum_probs=94.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++...... ...++....+..+.
T Consensus 8 gk~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 78 (280)
T 3tox_A 8 GKIAIVTGASSGIGRAAALLFAREGA-------KVVVTARNG--NALAELTDEIAGGGGEAAALAGDVGDEALHEALVEL 78 (280)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-------EEEECCSCH--HHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999987 899999874 4444444444322111 11222222222222
Q ss_pred ----cCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHHC
Q 020875 79 ----CTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
+...|++|+.||.....+ .+ ....+..|+.....+.+.+...- ...+++|++|+.... .
T Consensus 79 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~--------~ 150 (280)
T 3tox_A 79 AVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGH--------T 150 (280)
T ss_dssp HHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTT--------T
T ss_pred HHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhC--------c
Confidence 237899999999642211 12 33467778776666665544321 024678888765422 0
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+++..-.|+.++.-...+-+.+|..++ +..|+.
T Consensus 151 ~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrv 184 (280)
T 3tox_A 151 AGFAGVAPYAASKAGLIGLVQALAVELG--ARGIRV 184 (280)
T ss_dssp BCCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 1233333566676666677777777764 345653
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.2e-07 Score=81.53 Aligned_cols=157 Identities=10% Similarity=0.065 Sum_probs=92.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC----CCcceEEeCChhhh--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTDAVEA-- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~~~~~~~a-- 78 (320)
.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++...... ...+++...+..++
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 103 (281)
T 4dry_A 33 GRIALVTGGGTGVGRGIAQALSAEGY-------SVVITGRRP--DVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFA 103 (281)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHH
Confidence 36899999999999999999999987 899999874 3444333333221100 11122221222222
Q ss_pred -----cCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
+...|++|+.||...... .+ ....+..|+.... .+.+.+++.....+++|++|+-...
T Consensus 104 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~------ 177 (281)
T 4dry_A 104 AVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ------ 177 (281)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGT------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhC------
Confidence 246799999999753211 12 3346777877644 4444554443124678888764321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+-+.+|..++ +..|+.
T Consensus 178 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 211 (281)
T 4dry_A 178 ---TPRPNSAPYTATKHAITGLTKSTALDGR--MHDIAC 211 (281)
T ss_dssp ---CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---CCCCCChhHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 2333333567776666677777777764 345653
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-06 Score=76.05 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=90.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc---CC---CCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA---FP---LLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~---~~---~~~~v~~~~~~~~ 77 (320)
+.++++||||+|.+|.+++..|++.|. .|++.++++ ++++....++.... .. ...++....+..+
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 76 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDGY-------RVVLIARSK--QNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADT 76 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHTC-------EEEEEESCH--HHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhccccCcceEEeccCCCHHHHHH
Confidence 457899999999999999999999987 899999874 44444333443221 00 0112221112222
Q ss_pred h-------cCCCcEEEEeCCCCCCCC--CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHH
Q 020875 78 A-------CTGVNIAVMVGGFPRKEG--ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 78 a-------l~~aDvVi~~ag~~~~~~--~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
. +...|++|+.||...... .+ ....+..|+.....+.+.+ ++. ..+++|++|+.....
T Consensus 77 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~~~~---- 150 (250)
T 3nyw_A 77 EIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ--KNGYIFNVASRAAKY---- 150 (250)
T ss_dssp HHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC---------
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEEccHHhcC----
Confidence 2 346899999999753221 11 2345677776665555554 443 346788888654211
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.++.-.|+.++.-...+-+.++..+. +..|+.
T Consensus 151 -----~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 183 (250)
T 3nyw_A 151 -----GFADGGIYGSTKFALLGLAESLYRELA--PLGIRV 183 (250)
T ss_dssp -------CCTTHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 122223566666666667777777764 345553
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-06 Score=77.29 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=87.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHH-hcccCC---CCcceEEeCChhhh--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL-VDAAFP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl-~~~~~~---~~~~v~~~~~~~~a-- 78 (320)
.++++||||+|++|.+++..|++.|. +|++.++++ ++++....++ ...... ...++....+..++
T Consensus 21 ~k~~lVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 91 (267)
T 1vl8_A 21 GRVALVTGGSRGLGFGIAQGLAEAGC-------SVVVASRNL--EEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLE 91 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999987 899999864 3333333333 111100 01122211122222
Q ss_pred -----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcc-hhhHHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPA-NTNALILKEF 144 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~-~~~~~~~~~~ 144 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+..+- ....++|++|+.. ..
T Consensus 92 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-------- 163 (267)
T 1vl8_A 92 AVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE-------- 163 (267)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC--------
T ss_pred HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhc--------
Confidence 237899999999754211 12 23466788877766655543321 1235778777543 11
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+..-.|+.++.....+-+.+++.++
T Consensus 164 -~~~~~~~~Y~asK~a~~~~~~~la~e~~ 191 (267)
T 1vl8_A 164 -VTMPNISAYAASKGGVASLTKALAKEWG 191 (267)
T ss_dssp -CCSSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred -cCCCCChhHHHHHHHHHHHHHHHHHHhc
Confidence 1223222466666666667777777764
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-06 Score=75.43 Aligned_cols=156 Identities=18% Similarity=0.139 Sum_probs=90.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++||||+|.+|.+++..|++.|. +|++.+++. ++++....++...... ...++....+..++
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~ 77 (247)
T 2jah_A 7 GKVALITGASSGIGEATARALAAEGA-------AVAIAARRV--EKLRALGDELTAAGAKVHVLELDVADRQGVDAAVAS 77 (247)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999987 899999863 3444333333321100 01122111122222
Q ss_pred ----cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 79 ----CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+...|++|+.||..... ..+ ....+..|+.....+.+.+..+-. ..+++|++|+-... .+
T Consensus 78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~~ 148 (247)
T 2jah_A 78 TVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGR---------VN 148 (247)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGT---------CC
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhc---------CC
Confidence 34799999999975321 122 234577888777776666544210 11578888764321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.|..-.|+.++.....+-+.+++.+. +..|+
T Consensus 149 ~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 179 (247)
T 2jah_A 149 VRNAAVYQATKFGVNAFSETLRQEVT--ERGVR 179 (247)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhc--ccCcE
Confidence 33222456665555566666777664 33454
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-06 Score=78.14 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=92.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-C---CCcceEEeCCh----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-P---LLKGVVATTDA---- 75 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~---~~~~v~~~~~~---- 75 (320)
+.++++||||+|+||.+++..|++.|. +|++.|+++ ++++....++..... . ...++....+.
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~ 110 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGA-------NVAVAARSP--RELSSVTAELGELGAGNVIGVRLDVSDPGSCADAA 110 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSG--GGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHH
Confidence 346899999999999999999999997 899999874 444444444533210 0 01122111111
Q ss_pred ---hhhcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 76 ---VEACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 76 ---~~al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
.+.+...|++|+.||..... ..+ ....+..|+.....+.+.+ ++.. ..++|++|+-....
T Consensus 111 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iV~isS~~~~~----- 183 (293)
T 3rih_A 111 RTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG--RGRVILTSSITGPV----- 183 (293)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS--SCEEEEECCSBTTT-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEeChhhcc-----
Confidence 22234779999999975321 112 3346778888777766665 4443 36788887643210
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|..-.|+.++.-...+-+.+|+.+.
T Consensus 184 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~ 211 (293)
T 3rih_A 184 ---TGYPGWSHYGASKAAQLGFMRTAAIELA 211 (293)
T ss_dssp ---BBCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233333566666666677777777764
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.37 E-value=9e-07 Score=77.98 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=89.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc---
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC--- 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al--- 79 (320)
++++||||+|++|.+++..|++.|. +|++.++++ ++++....++...... ...++....+..+++
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 73 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGF-------AVAIADYND--ATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQA 73 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4799999999999999999999987 899999864 3333333333221100 011222112223333
Q ss_pred ----CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 80 ----TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 80 ----~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~----~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
...|++|+.||...... .+ ....+..|+.....+. +.+++.. ...++|++|+....
T Consensus 74 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~--------- 143 (256)
T 1geg_A 74 RKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEG-HGGKIINACSQAGH--------- 143 (256)
T ss_dssp HHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGT---------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCCEEEEECchhhc---------
Confidence 37999999998743211 12 2345677776655444 4444432 24678888764321
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 144 ~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 177 (256)
T 1geg_A 144 VGNPELAVYSSSKFAVRGLTQTAARDLA--PLGITV 177 (256)
T ss_dssp SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHH--HcCeEE
Confidence 1223222456666655566666777664 345653
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=77.73 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=90.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC---cCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGV---MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~---~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~ 77 (320)
++++|+||||+|++|++++..|++.| . +|++++++.. +++. ..++..... ....++....+..+
T Consensus 20 ~~k~vlITGasggIG~~la~~L~~~G~~~~-------~V~~~~r~~~--~~~~-~~~l~~~~~~~~~~~~Dl~~~~~v~~ 89 (267)
T 1sny_A 20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ-------HLFTTCRNRE--QAKE-LEDLAKNHSNIHILEIDLRNFDAYDK 89 (267)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-------EEEEEESCTT--SCHH-HHHHHHHCTTEEEEECCTTCGGGHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhcCCCCc-------EEEEEecChh--hhHH-HHHhhccCCceEEEEecCCChHHHHH
Confidence 34689999999999999999999988 5 8999998753 2221 122221110 01122222223334
Q ss_pred hcC---------CCcEEEEeCCCCC-CC---CCC---HHHHHHhhHHHHHHHHHHHhhhc---------CC----CeEEE
Q 020875 78 ACT---------GVNIAVMVGGFPR-KE---GME---RKDVMSKNVSIYKAQASALEQHA---------AP----NCKVL 128 (320)
Q Consensus 78 al~---------~aDvVi~~ag~~~-~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~---------~~----~~~vi 128 (320)
+++ ..|+||+.||... .. ..+ ....+..|+.....+.+.+.+.- .. ..++|
T Consensus 90 ~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv 169 (267)
T 1sny_A 90 LVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAII 169 (267)
T ss_dssp HHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEE
T ss_pred HHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEE
Confidence 443 6999999999754 11 112 23456778777777666654431 00 35788
Q ss_pred EEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 129 v~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
++|+...... ....++...|+.++.....+...+++.+. +..++
T Consensus 170 ~isS~~~~~~------~~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~ 213 (267)
T 1sny_A 170 NMSSILGSIQ------GNTDGGMYAYRTSKSALNAATKSLSVDLY--PQRIM 213 (267)
T ss_dssp EECCGGGCST------TCCSCCCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred EEeccccccc------CCCCCCchHHHHHHHHHHHHHHHHHHHhh--cCCcE
Confidence 8886542210 00011222456666666666666777653 23455
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=76.78 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=90.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc---
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC--- 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al--- 79 (320)
++++||||+|.+|.+++..|++.|. +|++.+++++...++....++...... ...++....+..+++
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (258)
T 3a28_C 3 KVAMVTGGAQGIGRGISEKLAADGF-------DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEA 75 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 5799999999999999999999987 899999864211133333333321100 011221111222223
Q ss_pred ----CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 80 ----TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 80 ----~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~----~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+.+ .. ...++|++|+....
T Consensus 76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~--------- 145 (258)
T 3a28_C 76 AEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELG-VKGKIINAASIAAI--------- 145 (258)
T ss_dssp HHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCCEEEEECCGGGT---------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCcEEEEECcchhc---------
Confidence 37899999999753211 12 334677887766666555544 33 22578888764321
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|..-.|+.++.....+-+.+++.++ +..|+
T Consensus 146 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~ 178 (258)
T 3a28_C 146 QGFPILSAYSTTKFAVRGLTQAAAQELA--PKGHT 178 (258)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHH--hhCeE
Confidence 1233333466666666666677777764 33455
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-06 Score=77.21 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=92.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-----------ccchhHHHHHHHhcccCC---CCcceE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-----------AAEALNGVKMELVDAAFP---LLKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-----------~~~~~~~~~~dl~~~~~~---~~~~v~ 70 (320)
.++++||||+|.+|.+++..|++.|. +|++.|++. +.++++....++...... ...++.
T Consensus 15 gk~~lVTGas~gIG~a~a~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 87 (280)
T 3pgx_A 15 GRVAFITGAARGQGRSHAVRLAAEGA-------DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVR 87 (280)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 46899999999999999999999997 899999731 123333333333322111 011222
Q ss_pred EeCChhhh-------cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCc
Q 020875 71 ATTDAVEA-------CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANP 133 (320)
Q Consensus 71 ~~~~~~~a-------l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP 133 (320)
...+..+. +...|++|+.||...... .+ ....+..|+.....+.+.+ .+.. ..+++|++|+.
T Consensus 88 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~ 166 (280)
T 3pgx_A 88 DDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAG-NGGSIVVVSSS 166 (280)
T ss_dssp CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-SCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCCEEEEEcch
Confidence 11122222 347899999999754211 12 2345677877666555554 4443 35778888865
Q ss_pred chhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
... .+.|..-.|+.++.-...+-+.+++.+. +..|+.
T Consensus 167 ~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 203 (280)
T 3pgx_A 167 AGL---------KATPGNGHYSASKHGLTALTNTLAIELG--EYGIRV 203 (280)
T ss_dssp GGT---------SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred hhc---------cCCCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 421 2233333566666666677777777764 345553
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-06 Score=79.42 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=96.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-c----hhHHHHHHHhcccCC---CCcceEEeCChh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-E----ALNGVKMELVDAAFP---LLKGVVATTDAV 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-~----~~~~~~~dl~~~~~~---~~~~v~~~~~~~ 76 (320)
.++++||||+|.||.+++..|++.|. .|++.+++... + .+.....++...... ...+++...+..
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga-------~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~ 117 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGA-------NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQIS 117 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCC-------EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHH
Confidence 35899999999999999999999986 89999987532 1 122222233221110 111222222222
Q ss_pred hh-------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHH
Q 020875 77 EA-------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALIL 141 (320)
Q Consensus 77 ~a-------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~ 141 (320)
++ +...|++|+.||..... ..+ ....+..|+.....+.+.+..+- ...+++|++|++.....
T Consensus 118 ~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~--- 194 (346)
T 3kvo_A 118 AAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNP--- 194 (346)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCG---
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCC---
Confidence 22 33899999999974321 112 24567888888777777664431 12468888887653211
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
..++..-.|+.++.....+-+.+|+.++ ..|+.
T Consensus 195 ----~~~~~~~~Y~aSKaal~~l~~~la~e~~---~gIrv 227 (346)
T 3kvo_A 195 ----VWFKQHCAYTIAKYGMSMYVLGMAEEFK---GEIAV 227 (346)
T ss_dssp ----GGTSSSHHHHHHHHHHHHHHHHHHHHTT---TTCEE
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHhc---CCcEE
Confidence 0022222466777667778888899987 34653
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-06 Score=77.39 Aligned_cols=155 Identities=14% Similarity=0.165 Sum_probs=93.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++||||+|.+|.+++..|++.|. .|++.++++ +.++....++...... ...++....+..+.
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 98 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGA-------MVIGTATTE--AGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVES 98 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHH
Confidence 46899999999999999999999997 899999864 3344333333322111 01122221222222
Q ss_pred ----cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 79 ----CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+...|++|+.||..... ..+ ....+..|+.....+.+.+. +. ..+++|++|+....
T Consensus 99 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~~~-------- 168 (270)
T 3ftp_A 99 TLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA--RGGRIVNITSVVGS-------- 168 (270)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCHHHH--------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECchhhC--------
Confidence 33789999999975421 112 33467788877776666554 33 34778888864321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.-...+-+.+++.+. +..|+.
T Consensus 169 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 202 (270)
T 3ftp_A 169 -AGNPGQVNYAAAKAGVAGMTRALAREIG--SRGITV 202 (270)
T ss_dssp -HCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEE
Confidence 1233333567776666667777777764 345653
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.1e-07 Score=79.73 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=88.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC---hhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD---AVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~---~~~al~ 80 (320)
+.++++||||+|++|.+++..|++.|. +|++.|+++ ++++... ++.... ....++....+ ..+.+.
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~-~~~~~~-~~~~D~~~~~~~~~~~~~~~ 73 (246)
T 2ag5_A 5 DGKVIILTAAAQGIGQAAALAFAREGA-------KVIATDINE--SKLQELE-KYPGIQ-TRVLDVTKKKQIDQFANEVE 73 (246)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHGGGG-GSTTEE-EEECCTTCHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHH-hccCce-EEEeeCCCHHHHHHHHHHhC
Confidence 456899999999999999999999986 899999863 3332211 111000 00011111111 122356
Q ss_pred CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHHHCCCCC-
Q 020875 81 GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEFAPSIP- 149 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~~~~~~~- 149 (320)
..|++|+.||...... .+ ....+..|+.....+.+.+. +. ...++|++|+.... .+.|
T Consensus 74 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS~~~~---------~~~~~ 142 (246)
T 2ag5_A 74 RLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ--KSGNIINMSSVASS---------VKGVV 142 (246)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCSBTT---------TBCCT
T ss_pred CCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEechHhC---------cCCCC
Confidence 7899999999754211 12 23456778776666665544 33 24678888764321 1122
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..-.|+.++.....+-+.+++.+. +..|+
T Consensus 143 ~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~ 171 (246)
T 2ag5_A 143 NRCVYSTTKAAVIGLTKSVAADFI--QQGIR 171 (246)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred CCccHHHHHHHHHHHHHHHHHHhh--hcCcE
Confidence 222456666656666667777663 34455
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.7e-06 Score=74.85 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=90.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-C---CCcce--EEeCChhh--
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-P---LLKGV--VATTDAVE-- 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~---~~~~v--~~~~~~~~-- 77 (320)
++++||||+|.+|.+++..|++.|. .|++.|+++ ++++....++..... . ...++ ....+..+
T Consensus 13 k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 83 (252)
T 3f1l_A 13 RIILVTGASDGIGREAAMTYARYGA-------TVILLGRNE--EKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLA 83 (252)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHH
Confidence 5899999999999999999999987 899999874 444433333332111 0 01122 11111122
Q ss_pred -----hcCCCcEEEEeCCCCCC--C--CCCH---HHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHH
Q 020875 78 -----ACTGVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 78 -----al~~aDvVi~~ag~~~~--~--~~~r---~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
.+...|++|+.||.... + ..+. ...+..|+.....+.+.+ ++. ..+++|++|+....
T Consensus 84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~~~~----- 156 (252)
T 3f1l_A 84 QRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS--DAGSLVFTSSSVGR----- 156 (252)
T ss_dssp HHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS--SSCEEEEECCGGGT-----
T ss_pred HHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC--CCCEEEEECChhhc-----
Confidence 23378999999997321 1 1222 346778877776666665 433 34678888765421
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.+..-.|+.++.-...+-+.+|+.++
T Consensus 157 ----~~~~~~~~Y~asK~a~~~l~~~la~e~~ 184 (252)
T 3f1l_A 157 ----QGRANWGAYAASKFATEGMMQVLADEYQ 184 (252)
T ss_dssp ----SCCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----cCCCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 1233333567776666777788888886
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-06 Score=76.92 Aligned_cols=154 Identities=12% Similarity=0.183 Sum_probs=92.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++||||+|.+|.+++..|++.|. +|++.++++ ++++....++...... ...+++...+..+.
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 74 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGA-------KILLGARRQ--ARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQA 74 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 35899999999999999999999987 899999874 4444444444332110 01122211122222
Q ss_pred ----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHH----HhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 79 ----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASA----LEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
+...|++|+.||...... .+ ....+..|+.....+.+. +++.. .+++|++|+....
T Consensus 75 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~-------- 144 (264)
T 3tfo_A 75 AVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR--SGQIINIGSIGAL-------- 144 (264)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT--------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEEcCHHHc--------
Confidence 347899999999754211 12 334567787766555444 44443 4678888864421
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.+..-.|+.++.-...+-+.++..+ + .|+..
T Consensus 145 -~~~~~~~~Y~asKaal~~l~~~la~e~---~-gIrvn 177 (264)
T 3tfo_A 145 -SVVPTAAVYCATKFAVRAISDGLRQES---T-NIRVT 177 (264)
T ss_dssp -CCCTTCHHHHHHHHHHHHHHHHHHHHC---S-SEEEE
T ss_pred -ccCCCChhHHHHHHHHHHHHHHHHHhC---C-CCEEE
Confidence 223332346666665666777777775 2 67643
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.35 E-value=6.4e-07 Score=78.94 Aligned_cols=160 Identities=11% Similarity=0.011 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCC---CCcceEEeCChhhh
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP---LLKGVVATTDAVEA 78 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~---~~~~v~~~~~~~~a 78 (320)
.+.++|+||||+|++|.+++..|++.|. +|++++++.. .......++... ... ...++....+..++
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~-------~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~ 82 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-------NVAVIYRSAA--DAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKT 82 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSCT--THHHHHHHHHHHHTCCEEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCcch--hhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHH
Confidence 3446899999999999999999999886 8999998532 222222222211 000 01111111112222
Q ss_pred -------cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc---CCCeEEEEEcCcchhhHHHHH
Q 020875 79 -------CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA---APNCKVLVVANPANTNALILK 142 (320)
Q Consensus 79 -------l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~snP~~~~~~~~~ 142 (320)
+...|+||+.||...... .+ ....+..|+.....+.+.+.+.. ....++|++|+........ .
T Consensus 83 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-~ 161 (265)
T 1h5q_A 83 IQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQ-S 161 (265)
T ss_dssp HHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCE-E
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccc-c
Confidence 335899999999753211 12 23457788877777666654431 1236777777543210000 0
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
. ....++...|+.++.....+-..+++.+.
T Consensus 162 ~-~~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 191 (265)
T 1h5q_A 162 S-LNGSLTQVFYNSSKAACSNLVKGLAAEWA 191 (265)
T ss_dssp E-TTEECSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred c-ccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 0 00000112355565555666666777653
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.2e-07 Score=79.75 Aligned_cols=151 Identities=19% Similarity=0.138 Sum_probs=91.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH---HHHHHhcccCCCCcceE-EeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG---VKMELVDAAFPLLKGVV-ATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~---~~~dl~~~~~~~~~~v~-~~~~~~~al 79 (320)
+.++++||||+|.+|.+++..|++.|. +|++.|++.. .+.. ...|+.+.. .+. ......+.+
T Consensus 27 ~gk~vlVTGas~gIG~aia~~la~~G~-------~V~~~~r~~~--~~~~~~~~~~Dv~~~~-----~~~~~~~~~~~~~ 92 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGGAVVTALRAAGA-------RVAVADRAVA--GIAADLHLPGDLREAA-----YADGLPGAVAAGL 92 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEECSSCCT--TSCCSEECCCCTTSHH-----HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCHH--HHHhhhccCcCCCCHH-----HHHHHHHHHHHhc
Confidence 346899999999999999999999987 8999998642 1111 112222211 000 000122334
Q ss_pred CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 80 TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+ ++.. .+++|++|+.... .+.+
T Consensus 93 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~---------~~~~ 161 (266)
T 3uxy_A 93 GRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG--GGAIVNVASCWGL---------RPGP 161 (266)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTT---------BCCT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHhC---------CCCC
Confidence 57999999999754211 12 3345678887777666665 4443 4678888865422 1233
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
..-.|+.++.-...+-+.+++.++ +..|+.
T Consensus 162 ~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 191 (266)
T 3uxy_A 162 GHALYCLTKAALASLTQCMGMDHA--PQGIRI 191 (266)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CChHHHHHHHHHHHHHHHHHHHhh--hcCcEE
Confidence 333467776666677777887765 335653
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-06 Score=76.57 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=91.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc----------cchhHHHHHHHhcccCC---CCcceEE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA----------AEALNGVKMELVDAAFP---LLKGVVA 71 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~----------~~~~~~~~~dl~~~~~~---~~~~v~~ 71 (320)
.++++||||+|.+|.+++..|++.|. +|+++|++.. .+.++....++...... ...++..
T Consensus 13 gk~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 85 (278)
T 3sx2_A 13 GKVAFITGAARGQGRAHAVRLAADGA-------DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRD 85 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 46899999999999999999999997 8999998621 22333222222221111 0112222
Q ss_pred eCChhhhc-------CCCcEEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhH
Q 020875 72 TTDAVEAC-------TGVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 72 ~~~~~~al-------~~aDvVi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~ 138 (320)
..+..+++ ...|++|+.||...... ++..+.+..|+.....+.+.+ .+.. ..+++|++|+.....
T Consensus 86 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~~- 163 (278)
T 3sx2_A 86 RESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQG-TGGSIVLISSSAGLA- 163 (278)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-SCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCcEEEEEccHHhcC-
Confidence 22223333 37899999999754222 123456778877666666654 4433 357788888644221
Q ss_pred HHHHHHCCCC----CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 139 LILKEFAPSI----PAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 139 ~~~~~~~~~~----~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+. |..-.|+.++.....+-+.+++.++ +..|+.
T Consensus 164 --------~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 200 (278)
T 3sx2_A 164 --------GVGSADPGSVGYVAAKHGVVGLMRVYANLLA--GQMIRV 200 (278)
T ss_dssp --------CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --------CCccCCCCchHhHHHHHHHHHHHHHHHHHHh--ccCcEE
Confidence 11 1111355565555667777777765 345653
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-06 Score=75.34 Aligned_cols=149 Identities=11% Similarity=0.045 Sum_probs=86.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++...... ...++....+..+++
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 76 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGA-------RVVITGRTK--EKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQ 76 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999999987 899999874 4444444444322111 011222212222222
Q ss_pred -----CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 -----TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+. +.. ..+++|++|+....
T Consensus 77 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~-------- 147 (257)
T 3imf_A 77 IDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKG-IKGNIINMVATYAW-------- 147 (257)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCEEEEECCGGGG--------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhC-CCcEEEEECchhhc--------
Confidence 37899999999743211 12 33467788877766666553 333 34678888765422
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.+.|..-.|+.++.....+-+.+|+.+
T Consensus 148 -~~~~~~~~Y~asKaa~~~l~~~la~e~ 174 (257)
T 3imf_A 148 -DAGPGVIHSAAAKAGVLAMTKTLAVEW 174 (257)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 122222235555544445555555444
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=9.3e-07 Score=79.17 Aligned_cols=156 Identities=18% Similarity=0.114 Sum_probs=91.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChh----
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV---- 76 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~---- 76 (320)
|+.+.++++||||+|.+|.+++..|++.|. +|++.|++. ++++....++.........+++...+..
T Consensus 1 M~l~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 71 (281)
T 3zv4_A 1 MKLTGEVALITGGASGLGRALVDRFVAEGA-------RVAVLDKSA--ERLRELEVAHGGNAVGVVGDVRSLQDQKRAAE 71 (281)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHTBTTEEEEECCTTCHHHHHHHHH
T ss_pred CCcCCCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCH--HHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHH
Confidence 777778999999999999999999999997 899999863 3333322221100000011221111122
Q ss_pred ---hhcCCCcEEEEeCCCCCCCC-------CC----HHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCcchhhHHHH
Q 020875 77 ---EACTGVNIAVMVGGFPRKEG-------ME----RKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALIL 141 (320)
Q Consensus 77 ---~al~~aDvVi~~ag~~~~~~-------~~----r~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP~~~~~~~~ 141 (320)
+.+...|++|+.||+..... .. ....+..|+.....+.+.+..+- ...+.+|++++....
T Consensus 72 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~----- 146 (281)
T 3zv4_A 72 RCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGF----- 146 (281)
T ss_dssp HHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGT-----
T ss_pred HHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhc-----
Confidence 22346799999999743111 11 23456678776666665554321 012567777754321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCC
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNV 174 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v 174 (320)
.+.+..-.|+.++.-...+-+.+|+.++-
T Consensus 147 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~~ 175 (281)
T 3zv4_A 147 ----YPNGGGPLYTATKHAVVGLVRQMAFELAP 175 (281)
T ss_dssp ----SSSSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----cCCCCCchhHHHHHHHHHHHHHHHHHhcC
Confidence 12222224677766667777888888863
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=77.89 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=91.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
+.++++||||+|.+|.+++..|++.|. .|++.+++. .+.++....++...... ...++....+..+++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~ 98 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGA-------KVAVNYASS-AGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFA 98 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCC-hHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 446899999999999999999999987 788888742 23333333333322111 011222211222222
Q ss_pred ------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 80 ------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 80 ------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+ .+.. .+++|++|+-...
T Consensus 99 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------- 169 (269)
T 4dmm_A 99 AVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR--SGRIINIASVVGE------- 169 (269)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCHHHH-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhc-------
Confidence 37899999999754221 12 3346778877766665554 4432 4678888753321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
. +.+..-.|+.++.....+-+.+|+.+. +..|+
T Consensus 170 ~--~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~ 202 (269)
T 4dmm_A 170 M--GNPGQANYSAAKAGVIGLTKTVAKELA--SRGIT 202 (269)
T ss_dssp H--CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred C--CCCCchhHHHHHHHHHHHHHHHHHHHh--hhCcE
Confidence 1 233333567776666667777777764 33455
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-06 Score=76.03 Aligned_cols=158 Identities=11% Similarity=0.059 Sum_probs=92.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc----------cchhHHHHHHHhcccCC---CCcceEE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA----------AEALNGVKMELVDAAFP---LLKGVVA 71 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~----------~~~~~~~~~dl~~~~~~---~~~~v~~ 71 (320)
.++++||||+|.+|.+++..|++.|. .|+++|+++. .+.+.....++...... ...++..
T Consensus 28 gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 100 (299)
T 3t7c_A 28 GKVAFITGAARGQGRSHAITLAREGA-------DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD 100 (299)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC
Confidence 46899999999999999999999997 8999998621 22333223333322111 0112222
Q ss_pred eCChhhh-------cCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCc
Q 020875 72 TTDAVEA-------CTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANP 133 (320)
Q Consensus 72 ~~~~~~a-------l~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP 133 (320)
..+..++ +...|++|+.||...... .+ ....+..|+.....+.+.+. +.. ..+++|++|+.
T Consensus 101 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~~g~Iv~isS~ 179 (299)
T 3t7c_A 101 FDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGK-RGGSIVFTSSI 179 (299)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-SCEEEEEECCG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEECCh
Confidence 1222222 347899999999753211 12 24467788776666665543 332 34778888764
Q ss_pred chhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
... .+.+..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 180 ~~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 216 (299)
T 3t7c_A 180 GGL---------RGAENIGNYIASKHGLHGLMRTMALELG--PRNIRV 216 (299)
T ss_dssp GGT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred hhc---------cCCCCcchHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 321 2233323466666666667777777764 345653
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=67.16 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC-cCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~ 81 (320)
.++||+|+|| |++|++++..|...| + +|+++|+++ ++++. +..... ....++....++.+.+++
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~-------~v~~~~r~~--~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~ 69 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNY-------SVTVADHDL--AALAV----LNRMGVATKQVDAKDEAGLAKALGG 69 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSE-------EEEEEESCH--HHHHH----HHTTTCEEEECCTTCHHHHHHHTTT
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCc-------eEEEEeCCH--HHHHH----HHhCCCcEEEecCCCHHHHHHHHcC
Confidence 4579999997 999999999999988 4 899999863 33322 111110 011122222345667889
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
+|+||++++.. ....+++.+.+.+ ..++.++...+.
T Consensus 70 ~d~vi~~~~~~----------------~~~~~~~~~~~~g---~~~~~~~~~~~~ 105 (118)
T 3ic5_A 70 FDAVISAAPFF----------------LTPIIAKAAKAAG---AHYFDLTEDVAA 105 (118)
T ss_dssp CSEEEECSCGG----------------GHHHHHHHHHHTT---CEEECCCSCHHH
T ss_pred CCEEEECCCch----------------hhHHHHHHHHHhC---CCEEEecCcHHH
Confidence 99999998521 1245566666554 556667766553
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-06 Score=75.71 Aligned_cols=157 Identities=14% Similarity=0.044 Sum_probs=92.7
Q ss_pred CCCEEEEEcCCCh-hHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC----CCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAAGQ-IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~-vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~~~~~~~a 78 (320)
+.++++||||+|+ +|.+++..|++.|. +|++.|++. ++++....++...... ...++....+..++
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~ 91 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA-------DVVISDYHE--RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDAL 91 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC-------EEEEecCCH--HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHH
Confidence 3468999998884 99999999999987 899999874 3444333444322110 01122221122222
Q ss_pred c-------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhh----cCCCeEEEEEcCcchhhHHHH
Q 020875 79 C-------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQH----AAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 79 l-------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~----~~~~~~viv~snP~~~~~~~~ 141 (320)
+ ...|++|+.||...... .+ ....+..|+.....+.+.+..+ . ...++|++|+....
T Consensus 92 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~~sS~~~~----- 165 (266)
T 3o38_A 92 ITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVD-HGGVIVNNASVLGW----- 165 (266)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-CCEEEEEECCGGGT-----
T ss_pred HHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEeCCHHHc-----
Confidence 2 36799999999754221 12 2345677877666666555443 2 34677777754321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 166 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v 199 (266)
T 3o38_A 166 ----RAQHSQSHYAAAKAGVMALTRCSAIEAV--EFGVRI 199 (266)
T ss_dssp ----CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ----CCCCCCchHHHHHHHHHHHHHHHHHHHH--HcCcEE
Confidence 2233333567776666677777777764 345553
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-06 Score=76.65 Aligned_cols=158 Identities=13% Similarity=0.042 Sum_probs=90.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHh-cccCC---CCcceEE----eCChh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV-DAAFP---LLKGVVA----TTDAV 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~-~~~~~---~~~~v~~----~~~~~ 76 (320)
.++++||||+|.+|.+++..|++.|. +|++.+++. .++++....++. ..... ...++.. ..+..
T Consensus 23 ~k~~lVTGas~gIG~aia~~L~~~G~-------~V~~~~r~~-~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~ 94 (288)
T 2x9g_A 23 APAAVVTGAAKRIGRAIAVKLHQTGY-------RVVIHYHNS-AEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCE 94 (288)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHHTC-------EEEEEESSC-HHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------eEEEEeCCc-hHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHH
Confidence 46899999999999999999999986 899999874 133333333332 11100 1112222 11122
Q ss_pred hh-------cCCCcEEEEeCCCCCCCC-------------CC---HHHHHHhhHHHHHHHHHHHhhhcC--C------Ce
Q 020875 77 EA-------CTGVNIAVMVGGFPRKEG-------------ME---RKDVMSKNVSIYKAQASALEQHAA--P------NC 125 (320)
Q Consensus 77 ~a-------l~~aDvVi~~ag~~~~~~-------------~~---r~~~~~~n~~~~~~i~~~i~~~~~--~------~~ 125 (320)
++ +...|++|+.||...... .+ ....+..|+.....+.+.+...-. . ..
T Consensus 95 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g 174 (288)
T 2x9g_A 95 EIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNL 174 (288)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCE
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCe
Confidence 22 337899999999743211 11 224567787776666666554321 1 46
Q ss_pred EEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 126 ~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
++|++|+.... .+.+..-.|+.++.-...+-+.+++.+. +..|+.
T Consensus 175 ~iv~isS~~~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 219 (288)
T 2x9g_A 175 SIVNLCDAMVD---------QPCMAFSLYNMGKHALVGLTQSAALELA--PYGIRV 219 (288)
T ss_dssp EEEEECCTTTT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred EEEEEeccccc---------CCCCCCchHHHHHHHHHHHHHHHHHHhh--ccCeEE
Confidence 78888764321 1233323466666656667777777764 345653
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-06 Score=76.02 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=93.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al- 79 (320)
+.++++||||+|.+|.+++..|++.|. .|++.|+++ +++.....++...... ...++....+..+.+
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 102 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGA-------HVILHGVKP--GSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIE 102 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESST--TTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHH
Confidence 346899999999999999999999997 899999875 3444333344322110 011222111222222
Q ss_pred -----CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 -----TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+ ++. ..+++|++|+....
T Consensus 103 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS~~~~-------- 172 (275)
T 4imr_A 103 RAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR--KWGRVVSIGSINQL-------- 172 (275)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGT--------
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECCHHhC--------
Confidence 37899999999753211 12 2345677877666665554 443 34678888764321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
...+....|+.++.-...+-+.+|+.++ +..|+.
T Consensus 173 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 206 (275)
T 4imr_A 173 -RPKSVVTAYAATKAAQHNLIQSQARDFA--GDNVLL 206 (275)
T ss_dssp -SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -CCCCCchhhHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 1122222367776666677777888775 345653
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.8e-07 Score=78.19 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=92.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCcc--chhHHHHHHHhcccCCCCcceEEeCChhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLLKGVVATTDAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~--~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al- 79 (320)
++++++||||+|.+|.+++..|++ .+. .|++.|+++.. +.+.....|+.+.. +..+.+
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~-------~v~~~~~~~~~~~~~~~~~~~Dv~~~~-----------~v~~~~~ 64 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNH-------TVINIDIQQSFSAENLKFIKADLTKQQ-----------DITNVLD 64 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTE-------EEEEEESSCCCCCTTEEEEECCTTCHH-----------HHHHHHH
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCc-------EEEEeccccccccccceEEecCcCCHH-----------HHHHHHH
Confidence 456799999999999999999998 665 78888886421 11111223333322 222222
Q ss_pred ----CCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 80 ----TGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 80 ----~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
...|++|+.||..... ..+ ....+..|+.....+.+.+.+.-.+.+++|++|+.... .+.|
T Consensus 65 ~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~---------~~~~ 135 (244)
T 4e4y_A 65 IIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCF---------IAKP 135 (244)
T ss_dssp HTTTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGT---------CCCT
T ss_pred HHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHc---------cCCC
Confidence 2789999999975321 122 34567899999999888887764233567777754321 2233
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..-.|+.++.....+-+.+++.+. +..|+
T Consensus 136 ~~~~Y~asKaa~~~~~~~la~e~~--~~gi~ 164 (244)
T 4e4y_A 136 NSFAYTLSKGAIAQMTKSLALDLA--KYQIR 164 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred CCchhHHHHHHHHHHHHHHHHHHH--HcCeE
Confidence 333466676666677777777664 33455
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=75.93 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCC---CCcceEEeCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFP---LLKGVVATTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~---~~~~v~~~~~~~~al~ 80 (320)
+++++||||+|.+|.+++..|++.|. +|++.+++. ++++....++... ... ...++....+..++++
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY-------ALALGARSV--DRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSK 72 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHH
Confidence 45799999999999999999999997 899999864 4444433344311 100 0112222222333333
Q ss_pred -------CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCcc
Q 020875 81 -------GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPA 134 (320)
Q Consensus 81 -------~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP~ 134 (320)
..|++|+.||...... .+ ....+..|+.....+.+.+...- .....+|++++..
T Consensus 73 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~ 140 (235)
T 3l77_A 73 KVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDV 140 (235)
T ss_dssp -HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGG
T ss_pred HHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecch
Confidence 7899999999754221 12 33466778777666666654320 0124566666543
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-06 Score=77.79 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=92.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-------ccchhHHHHHHHhcccCCCCcceEEeCCh-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-------AAEALNGVKMELVDAAFPLLKGVVATTDA- 75 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-------~~~~~~~~~~dl~~~~~~~~~~v~~~~~~- 75 (320)
+.++++||||+|.||.+++..|++.|. +|++.|+.. +.++++....++.........++....+.
T Consensus 8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-------~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~ 80 (319)
T 1gz6_A 8 DGRVVLVTGAGGGLGRAYALAFAERGA-------LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGE 80 (319)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHH
Confidence 346899999999999999999999987 888887631 12333333333432110001111111111
Q ss_pred ------hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHH
Q 020875 76 ------VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNAL 139 (320)
Q Consensus 76 ------~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~ 139 (320)
.+.+...|++|+.||+..... .+ ....+..|+.....+.+.+ ++.. ..++|++|+....
T Consensus 81 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~grIV~vsS~~~~--- 155 (319)
T 1gz6_A 81 KLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASGI--- 155 (319)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH---
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChhhc---
Confidence 122447899999999754321 12 2346778887765555554 4443 3678888764321
Q ss_pred HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+ +.+....|+.++.....+-+.+++.+. +..|+..
T Consensus 156 ----~--~~~~~~~Y~aSK~a~~~~~~~la~el~--~~gI~vn 190 (319)
T 1gz6_A 156 ----Y--GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIHCN 190 (319)
T ss_dssp ----H--CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEE
T ss_pred ----c--CCCCCHHHHHHHHHHHHHHHHHHHHhc--ccCEEEE
Confidence 1 222223567777766677777887764 3456643
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.5e-06 Score=79.19 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC------------CcceEE
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL------------LKGVVA 71 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~------------~~~v~~ 71 (320)
++|||+|+| +|++|..++..|++ |+ +|+++|+++ ++++. +.....+. ...++.
T Consensus 35 ~~mkIaVIG-lG~mG~~lA~~La~-G~-------~V~~~D~~~--~~v~~----l~~g~~~i~e~~l~~ll~~~~~~l~~ 99 (432)
T 3pid_A 35 EFMKITISG-TGYVGLSNGVLIAQ-NH-------EVVALDIVQ--AKVDM----LNQKISPIVDKEIQEYLAEKPLNFRA 99 (432)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHT-TS-------EEEEECSCH--HHHHH----HHTTCCSSCCHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHc-CC-------eEEEEecCH--HHhhH----HhccCCccccccHHHHHhhccCCeEE
Confidence 358999999 69999999998887 76 899999974 33332 22111110 135788
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEE-cCcchhhHHHHH
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPANTNALILK 142 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~-snP~~~~~~~~~ 142 (320)
+++..+++++||+||++...+....... .++..+++.++.+.+.. ++..+|.- |.|.+..-.+..
T Consensus 100 ttd~~ea~~~aDvViiaVPt~~~~~~~~-----~Dl~~V~~v~~~i~~l~-~g~iVV~~STv~pgtt~~l~~ 165 (432)
T 3pid_A 100 TTDKHDAYRNADYVIIATPTDYDPKTNY-----FNTSTVEAVIRDVTEIN-PNAVMIIKSTIPVGFTRDIKE 165 (432)
T ss_dssp ESCHHHHHTTCSEEEECCCCEEETTTTE-----EECHHHHHHHHHHHHHC-TTSEEEECSCCCTTHHHHHHH
T ss_pred EcCHHHHHhCCCEEEEeCCCcccccccc-----ccHHHHHHHHHHHHhcC-CCcEEEEeCCCChHHHHHHHH
Confidence 8888899999999999865432111100 11223334444444422 55555544 356665444433
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=77.41 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=94.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CC----CCcceEEeCChh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP----LLKGVVATTDAV-- 76 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~----~~~~v~~~~~~~-- 76 (320)
+.++++||||+|.+|.+++..|++.|. .|++.|+++ ++++....++.... .. ...++....+..
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~ 77 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEAGA-------AVAFCARDG--ERLRAAESALRQRFPGARLFASVCDVLDALQVRAF 77 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHH
Confidence 346899999999999999999999987 899999864 44444444443311 00 011222111122
Q ss_pred -----hhcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHH
Q 020875 77 -----EACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 77 -----~al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~ 143 (320)
+.+...|++|+.||..... ..+ ....+..|+.....+.+.+..+- ...+++|++|+....
T Consensus 78 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~------- 150 (265)
T 3lf2_A 78 AEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLAS------- 150 (265)
T ss_dssp HHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGT-------
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccC-------
Confidence 2234789999999975321 122 34467788887777766664431 124678888754321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 151 --~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 184 (265)
T 3lf2_A 151 --QPEPHMVATSAARAGVKNLVRSMAFEFA--PKGVRV 184 (265)
T ss_dssp --SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCchhhHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 1233222456666555667777777764 345653
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=98.32 E-value=7.7e-07 Score=79.77 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=89.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC----CCCcceEEeCChhhh--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF----PLLKGVVATTDAVEA-- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~----~~~~~v~~~~~~~~a-- 78 (320)
.++|+||||+|++|.+++..|+++|. +|+++++++ ++++....++..... ....+++...+..+.
T Consensus 28 ~k~vlITGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 98 (286)
T 1xu9_A 28 GKKVIVTGASKGIGREMAYHLAKMGA-------HVVVTARSK--ETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVA 98 (286)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999999999987 899999864 334333222321110 001122111122222
Q ss_pred -----cCCCcEEEEe-CCCCCCC--CCC---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 -----CTGVNIAVMV-GGFPRKE--GME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 -----l~~aDvVi~~-ag~~~~~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+.+.|++|+. +|....+ ..+ ....+..|+.....+.+.+...-. ...++|++|+.... .
T Consensus 99 ~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~---------~ 169 (286)
T 1xu9_A 99 QAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK---------V 169 (286)
T ss_dssp HHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT---------S
T ss_pred HHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccc---------c
Confidence 2379999998 6764321 112 234577787776666665543210 12567777754321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.|..-.|+.++.....+-..+++.++.....|+.
T Consensus 170 ~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v 204 (286)
T 1xu9_A 170 AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSI 204 (286)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEE
Confidence 23333346666665556666677776433445553
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-06 Score=77.49 Aligned_cols=157 Identities=11% Similarity=0.080 Sum_probs=91.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~~~~a-- 78 (320)
+.++|+||||+|.+|.+++..|++.|. .|++.+... .++......++....... ..++....+..++
T Consensus 12 ~~k~vlITGas~giG~~ia~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 83 (256)
T 3ezl_A 12 SQRIAYVTGGMGGIGTSICQRLHKDGF-------RVVAGCGPN-SPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFD 83 (256)
T ss_dssp -CEEEEETTTTSHHHHHHHHHHHHTTE-------EEEEEECTT-CSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHH
Confidence 357899999999999999999999987 788877432 123333333333221111 1122211122222
Q ss_pred -----cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+...|++|+.||..... ..+ ....+..|+.....+ ++.+++.. .+++|++|+....
T Consensus 84 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~------- 154 (256)
T 3ezl_A 84 KVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG--WGRIINISSVNGQ------- 154 (256)
T ss_dssp HHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCCCGG-------
T ss_pred HHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchhhc-------
Confidence 33789999999975421 122 334677887775444 55555543 3678888875432
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+++.+. +..|+.
T Consensus 155 --~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 188 (256)
T 3ezl_A 155 --KGQFGQTNYSTAKAGIHGFTMSLAQEVA--TKGVTV 188 (256)
T ss_dssp --GSCSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --cCCCCCcccHHHHHHHHHHHHHHHHHHH--HhCCEE
Confidence 1233333566666666667777777764 345653
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.1e-06 Score=78.97 Aligned_cols=115 Identities=16% Similarity=0.106 Sum_probs=77.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--------------Ccce
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--------------LKGV 69 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v 69 (320)
+|.+|+|+| .|+||..++..|++.|+ +|+.+|+++ ++++ .|.....+. ..++
T Consensus 20 ~m~~IaViG-lGYVGLp~A~~~A~~G~-------~V~g~Did~--~kV~----~ln~G~~pi~Epgl~ell~~~~~~g~l 85 (444)
T 3vtf_A 20 HMASLSVLG-LGYVGVVHAVGFALLGH-------RVVGYDVNP--SIVE----RLRAGRPHIYEPGLEEALGRALSSGRL 85 (444)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSCH--HHHH----HHHTTCCSSCCTTHHHHHHHHHHTTCE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCC-------cEEEEECCH--HHHH----HHHCCCCCCCCCCHHHHHHHHHHcCCe
Confidence 456999999 79999999999999998 899999974 3333 232222111 2468
Q ss_pred EEeCChhhhcCCCcEEEEeCCCCCCCCCCH-HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEE-cCcchh
Q 020875 70 VATTDAVEACTGVNIAVMVGGFPRKEGMER-KDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPANT 136 (320)
Q Consensus 70 ~~~~~~~~al~~aDvVi~~ag~~~~~~~~r-~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~-snP~~~ 136 (320)
+.+++..+++++||++|++.+.|.....+. ..++ ....+.+++.++..+ +...+|+= |-|++.
T Consensus 86 ~~tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~~-~g~lVV~eSTVppGt 150 (444)
T 3vtf_A 86 SFAESAEEAVAATDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAKG-RWHLVVVKSTVPPGT 150 (444)
T ss_dssp EECSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHHC-SCCEEEECSCCCTTT
T ss_pred eEEcCHHHHHhcCCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhcC-CCeEEEEeCCCCCch
Confidence 888899999999999999999886544321 1222 234566677776544 33334443 456654
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-06 Score=76.54 Aligned_cols=158 Identities=11% Similarity=0.028 Sum_probs=92.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE-ecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~-D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al 79 (320)
+.++++||||+|++|.+++..|++.|. +|++. ++++ +.++....++...... ...+++...+..+.+
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-------~vv~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-------NIVINYARSK--KAALETAEEIEKLGVKVLVVKANVGQPAKIKEMF 73 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 346899999999999999999999997 77775 6653 3344333344322111 011222222222222
Q ss_pred -------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 -------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 -------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+.++- ...+++|++|+....
T Consensus 74 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~-------- 145 (258)
T 3oid_A 74 QQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSI-------- 145 (258)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGT--------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhC--------
Confidence 35699999998643211 12 23457788777666665553321 124678888754321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 146 -~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 179 (258)
T 3oid_A 146 -RYLENYTTVGVSKAALEALTRYLAVELS--PKQIIV 179 (258)
T ss_dssp -SBCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1233333567777666777778888874 445663
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=78.26 Aligned_cols=155 Identities=13% Similarity=0.049 Sum_probs=88.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA------ 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (320)
.++++||||+|++|.+++..|++.|. +|++.|+++ ++++....++.... ....++....+..++
T Consensus 9 ~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~Dv~d~~~v~~~~~~~~~ 78 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAGIVRAFVNSGA-------RVVICDKDE--SGGRALEQELPGAV-FILCDVTQEDDVKTLVSETIR 78 (270)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHCTTEE-EEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCCe-EEEcCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999987 899999863 33332222221100 001111111122222
Q ss_pred -cCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHHHHhhhc-CCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 79 -CTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASALEQHA-APNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 79 -l~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+.++- ....++|++|+.... . +.+
T Consensus 79 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~-------~--~~~ 149 (270)
T 1yde_A 79 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGA-------I--GQA 149 (270)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHH-------H--CCT
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcccc-------C--CCC
Confidence 337899999998743211 12 24567788887777766665421 012577888753311 1 222
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..-.|+.++.....+-+.+++.+. +..|+
T Consensus 150 ~~~~Y~asKaa~~~~~~~la~e~~--~~gi~ 178 (270)
T 1yde_A 150 QAVPYVATKGAVTAMTKALALDES--PYGVR 178 (270)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred CCcccHHHHHHHHHHHHHHHHHhh--hhCcE
Confidence 222456666656666666776654 33444
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=78.25 Aligned_cols=154 Identities=14% Similarity=0.192 Sum_probs=90.8
Q ss_pred CCEEEEEcCCCh--hHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhh--
Q 020875 5 PVRVLVTGAAGQ--IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVE-- 77 (320)
Q Consensus 5 ~~kI~IiGA~G~--vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~-- 77 (320)
.++++||||+|+ +|.+++..|++.|. +|++.++++..+.+ .++...... ...+++...+..+
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~-------~V~~~~r~~~~~~~----~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 94 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREGA-------ELAFTYVGQFKDRV----EKLCAEFNPAAVLPCDVISDQEIKDLF 94 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTC-------EEEEEECTTCHHHH----HHHHGGGCCSEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcCC-------EEEEeeCchHHHHH----HHHHHhcCCceEEEeecCCHHHHHHHH
Confidence 468999999977 99999999999987 89999987421222 222211100 0112221112222
Q ss_pred -----hcCCCcEEEEeCCCCCCC---C-----CC---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcchhhHHH
Q 020875 78 -----ACTGVNIAVMVGGFPRKE---G-----ME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALI 140 (320)
Q Consensus 78 -----al~~aDvVi~~ag~~~~~---~-----~~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~~~~~~ 140 (320)
.+...|++|+.||..... + .+ ..+.+..|+.....+.+.+...-. ..+++|++|+....
T Consensus 95 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~---- 170 (280)
T 3nrc_A 95 VELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAE---- 170 (280)
T ss_dssp HHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGT----
T ss_pred HHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccc----
Confidence 234679999999975421 0 12 234677888777777776665421 23678888765421
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|....|+.++.....+-+.+++.+. +..|+
T Consensus 171 -----~~~~~~~~Y~asKaal~~~~~~la~e~~--~~gi~ 203 (280)
T 3nrc_A 171 -----KAMPSYNTMGVAKASLEATVRYTALALG--EDGIK 203 (280)
T ss_dssp -----SCCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred -----cCCCCchhhHHHHHHHHHHHHHHHHHHH--HcCcE
Confidence 2333333566666666677777777765 33454
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5.3e-06 Score=72.18 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=87.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChh-------hh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAV-------EA 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~-------~a 78 (320)
++++||||+|++|.+++..|++.|. +|++.+++++ ++. .++. ......++.. .+.. +.
T Consensus 3 k~vlVTGas~giG~~~a~~l~~~G~-------~V~~~~r~~~--~~~---~~~~--~~~~~~D~~~-~~~~~~~~~~~~~ 67 (239)
T 2ekp_A 3 RKALVTGGSRGIGRAIAEALVARGY-------RVAIASRNPE--EAA---QSLG--AVPLPTDLEK-DDPKGLVKRALEA 67 (239)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHH---HHHT--CEEEECCTTT-SCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCHH--HHH---HhhC--cEEEecCCch-HHHHHHHHHHHHH
Confidence 5899999999999999999999986 8999998752 221 1111 0000111111 1222 23
Q ss_pred cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 79 CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
+.+.|++|+.||..... ..+ ....+..|+.....+.+.+ ++.. ..++|++|+.... .+.
T Consensus 68 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~~~ 136 (239)
T 2ekp_A 68 LGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG--WGRVLFIGSVTTF---------TAG 136 (239)
T ss_dssp HTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SCC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhc---------cCC
Confidence 45799999999875321 112 3345667776665555554 4433 3678888764321 112
Q ss_pred --CCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 149 --PAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 149 --~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+....|+.++.....+-+.+++.+. +..|+
T Consensus 137 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~ 168 (239)
T 2ekp_A 137 GPVPIPAYTTAKTALLGLTRALAKEWA--RLGIR 168 (239)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhh--hcCcE
Confidence 2223466666666667777777764 33455
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3.1e-06 Score=79.84 Aligned_cols=117 Identities=13% Similarity=0.224 Sum_probs=73.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC------------CcceEEeC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL------------LKGVVATT 73 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~------------~~~v~~~~ 73 (320)
|||+|+| +|.+|..++..|++ |+ +|.++|+++ ++++. +.....+. ..++..++
T Consensus 1 MkI~VIG-~G~vG~~~A~~La~-G~-------~V~~~d~~~--~~~~~----l~~~~~~i~e~~l~~~~~~~~~~l~~t~ 65 (402)
T 1dlj_A 1 MKIAVAG-SGYVGLSLGVLLSL-QN-------EVTIVDILP--SKVDK----INNGLSPIQDEYIEYYLKSKQLSIKATL 65 (402)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTT-TS-------EEEEECSCH--HHHHH----HHTTCCSSCCHHHHHHHHHSCCCEEEES
T ss_pred CEEEEEC-CCHHHHHHHHHHhC-CC-------EEEEEECCH--HHHHH----HHcCCCCcCCCCHHHHHHhccCcEEEeC
Confidence 6899999 69999999999998 76 899999874 33332 22111110 12456777
Q ss_pred ChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEE-EcCcchhhHHHHHH
Q 020875 74 DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLV-VANPANTNALILKE 143 (320)
Q Consensus 74 ~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv-~snP~~~~~~~~~~ 143 (320)
+..++++++|+||++...+......+.| +..+.++++.+.+. .++..+|. .|||.+....+...
T Consensus 66 ~~~~~~~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l-~~~~iVV~~ST~~~g~~~~l~~~ 130 (402)
T 1dlj_A 66 DSKAAYKEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQK 130 (402)
T ss_dssp CHHHHHHHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHH-CSSCEEEECSCCCTTHHHHHHHH
T ss_pred CHHHHhcCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhh-CCCCEEEEeCCCCccHHHHHHHH
Confidence 7778899999999997665311111112 12334444555442 25555554 58998876555443
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-06 Score=76.66 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=93.7
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChhhh
Q 020875 4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a 78 (320)
+.++|+||||+ |.+|.+++..|++.|. +|++.+++.. ......++..... ....+++...+..+.
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~-------~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 82 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGA-------ELAFTYVGDR---FKDRITEFAAEFGSELVFPCDVADDAQIDAL 82 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC-------EEEEEESSGG---GHHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCC-------CEEEEecchh---hHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 35799999998 9999999999999987 8999998631 1111222211110 011122222222222
Q ss_pred c-------CCCcEEEEeCCCCCC-----C--C-CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH
Q 020875 79 C-------TGVNIAVMVGGFPRK-----E--G-ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 79 l-------~~aDvVi~~ag~~~~-----~--~-~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
+ ...|++|+.||.... + . .+ ....+..|+.....+.+.+...-.+.+++|++|+....
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~---- 158 (271)
T 3ek2_A 83 FASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE---- 158 (271)
T ss_dssp HHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGT----
T ss_pred HHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccc----
Confidence 2 367999999997532 1 1 22 33467788888888888887653234577777754321
Q ss_pred HHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 141 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 141 ~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|..-.|+.++.-...+-..+++.+. +..|+
T Consensus 159 -----~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~ 191 (271)
T 3ek2_A 159 -----RAIPNYNTMGLAKAALEASVRYLAVSLG--AKGVR 191 (271)
T ss_dssp -----SBCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTCE
T ss_pred -----cCCCCccchhHHHHHHHHHHHHHHHHHH--hcCcE
Confidence 1233333566666666667777777764 33455
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.3e-06 Score=74.80 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=91.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc--------------cchhHHHHHHHhcccCC---CCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA--------------AEALNGVKMELVDAAFP---LLK 67 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~--------------~~~~~~~~~dl~~~~~~---~~~ 67 (320)
.++++||||+|.+|.+++..|++.|. .|+++|+++. .+.++.....+...... ...
T Consensus 11 ~k~~lVTGas~gIG~aia~~la~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (286)
T 3uve_A 11 GKVAFVTGAARGQGRSHAVRLAQEGA-------DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEV 83 (286)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEc
Confidence 46899999999999999999999997 8999998621 12233222222221110 011
Q ss_pred ceEEeCChhhh-------cCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEE
Q 020875 68 GVVATTDAVEA-------CTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLV 129 (320)
Q Consensus 68 ~v~~~~~~~~a-------l~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv 129 (320)
++....+..++ +...|++|+.||...... .+ ....+..|+.....+.+.+ .+.. ..+++|+
T Consensus 84 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~ 162 (286)
T 3uve_A 84 DVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGG-RGGSIIL 162 (286)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCcEEEE
Confidence 22211122222 237899999999754221 12 3346777877666665554 3333 3467888
Q ss_pred EcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 130 VANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 130 ~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+|+.... .+.|..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 163 isS~~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~v 203 (286)
T 3uve_A 163 TSSVGGL---------KAYPHTGHYVAAKHGVVGLMRAFGVELG--QHMIRV 203 (286)
T ss_dssp ECCGGGT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ECchhhc---------cCCCCccHHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 8865422 2233323466666666667777777764 345653
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=77.17 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=90.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA------ 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (320)
.++++||||+|.+|.+++..|++.|. .|++.|+++ ++++....++.........++....+..++
T Consensus 30 ~k~vlVTGas~GIG~aia~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (281)
T 3ppi_A 30 GASAIVSGGAGGLGEATVRRLHADGL-------GVVIADLAA--EKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQ 100 (281)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987 899999864 344433333311110011122111122222
Q ss_pred cCCCcEEEEe-CCCCCCC--------CCC---HHHHHHhhHHHHHHHHHHHhhhc--------CCCeEEEEEcCcchhhH
Q 020875 79 CTGVNIAVMV-GGFPRKE--------GME---RKDVMSKNVSIYKAQASALEQHA--------APNCKVLVVANPANTNA 138 (320)
Q Consensus 79 l~~aDvVi~~-ag~~~~~--------~~~---r~~~~~~n~~~~~~i~~~i~~~~--------~~~~~viv~snP~~~~~ 138 (320)
+...|++|+. +|..... ..+ ..+.+..|+.....+.+.+...- ...+++|++|+....
T Consensus 101 ~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~-- 178 (281)
T 3ppi_A 101 LGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY-- 178 (281)
T ss_dssp SSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGT--
T ss_pred hCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccccc--
Confidence 2367999998 6553211 112 34566777776666666554321 134678888765422
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.+..-.|+.++.....+-..+++.+. +..|+.
T Consensus 179 -------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 212 (281)
T 3ppi_A 179 -------EGQIGQTAYAAAKAGVIGLTIAAARDLS--SAGIRV 212 (281)
T ss_dssp -------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -------CCCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 2233333566666666667777777764 334653
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-06 Score=76.75 Aligned_cols=149 Identities=12% Similarity=0.105 Sum_probs=89.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH----HHHHHhcccCCCCcceE-EeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG----VKMELVDAAFPLLKGVV-ATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~----~~~dl~~~~~~~~~~v~-~~~~~~~al 79 (320)
.++|+||||+|.+|.+++..|++.|. +|++.|+++. ...+ ...|+.+.. .+. ......+.+
T Consensus 14 ~k~vlVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~~--~~~~~~~~~~~Dv~~~~-----~v~~~~~~~~~~~ 79 (269)
T 3vtz_A 14 DKVAIVTGGSSGIGLAVVDALVRYGA-------KVVSVSLDEK--SDVNVSDHFKIDVTNEE-----EVKEAVEKTTKKY 79 (269)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCC----CTTSSEEEECCTTCHH-----HHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCch--hccCceeEEEecCCCHH-----HHHHHHHHHHHHc
Confidence 47899999999999999999999987 8999998742 1111 112222221 000 000112233
Q ss_pred CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 80 TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
...|++|+.||...... .+ ....+..|+.....+.+.+ ++.. .+++|++|+.... .+.+
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~---------~~~~ 148 (269)
T 3vtz_A 80 GRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG--HGSIINIASVQSY---------AATK 148 (269)
T ss_dssp SCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SBCT
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhc---------cCCC
Confidence 47899999999754221 12 2345677877666655554 4332 4678888865421 1223
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
..-.|+.++.....+-+.+|..++ + .|+.
T Consensus 149 ~~~~Y~asKaa~~~l~~~la~e~~--~-~i~v 177 (269)
T 3vtz_A 149 NAAAYVTSKHALLGLTRSVAIDYA--P-KIRC 177 (269)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHT--T-TEEE
T ss_pred CChhHHHHHHHHHHHHHHHHHHhc--C-CCEE
Confidence 223567776666777778888875 2 4663
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=77.54 Aligned_cols=156 Identities=14% Similarity=0.116 Sum_probs=89.3
Q ss_pred CCEEEEEcC--CChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--
Q 020875 5 PVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-- 80 (320)
Q Consensus 5 ~~kI~IiGA--~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~-- 80 (320)
.++++|||| +|.+|.+++..|++.|. +|++.|+++. ..++....++.........++....+..+.++
T Consensus 7 ~k~vlVTGa~~s~gIG~aia~~l~~~G~-------~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (269)
T 2h7i_A 7 GKRILVSGIITDSSIAFHIARVAQEQGA-------QLVLTGFDRL-RLIQRITDRLPAKAPLLELDVQNEEHLASLAGRV 78 (269)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTTC-------EEEEEECSCH-HHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHHCCC-------EEEEEecChH-HHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHH
Confidence 468999998 89999999999999987 8999998742 11121111111000000112221112222222
Q ss_pred --------CCcEEEEeCCCCCC------C--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 81 --------GVNIAVMVGGFPRK------E--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 81 --------~aDvVi~~ag~~~~------~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
..|++|+.||.... + ..+ ....+..|+.....+.+.+.++-.+.+++|++|....
T Consensus 79 ~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~------ 152 (269)
T 2h7i_A 79 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS------ 152 (269)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS------
T ss_pred HHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc------
Confidence 78999999997531 1 112 2346778998888888888765322357777764321
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|....|+.++.....+-+.+++.+. +..|+
T Consensus 153 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~ 185 (269)
T 2h7i_A 153 ----RAMPAYNWMTVAKSALESVNRFVAREAG--KYGVR 185 (269)
T ss_dssp ----SCCTTTHHHHHHHHHHHHHHHHHHHHHH--TTTCE
T ss_pred ----cccCchHHHHHHHHHHHHHHHHHHHHhc--ccCcE
Confidence 1222222345555555566666777664 34455
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-06 Score=77.63 Aligned_cols=158 Identities=15% Similarity=0.075 Sum_probs=86.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh--
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-- 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-- 78 (320)
|+.+.++++||||+|.+|.+++..|++.|. +|++.+++. +.+. .++.........++....+..++
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~---~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGA-------QVVVLDIRG--EDVV---ADLGDRARFAAADVTDEAAVASALD 72 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEESSC--HHHH---HHTCTTEEEEECCTTCHHHHHHHHH
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCch--HHHH---HhcCCceEEEECCCCCHHHHHHHHH
Confidence 444557899999999999999999999997 899999853 2111 11111000001111111122222
Q ss_pred ----cCCCcEEEEeCCCCCC----------CCCCHHHHHHhhHHHHHHHHHHHhhhc----------CCCeEEEEEcCcc
Q 020875 79 ----CTGVNIAVMVGGFPRK----------EGMERKDVMSKNVSIYKAQASALEQHA----------APNCKVLVVANPA 134 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~----------~~~~r~~~~~~n~~~~~~i~~~i~~~~----------~~~~~viv~snP~ 134 (320)
+...|++|+.||.... ..++..+.+..|+.....+.+.+...- ...+++|++|+..
T Consensus 73 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~ 152 (257)
T 3tl3_A 73 LAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVA 152 (257)
T ss_dssp HHHHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC
T ss_pred HHHHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchh
Confidence 3489999999986421 111234567788877776666655431 1346788887654
Q ss_pred hhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
... +.+..-.|+.++.....+-+.+|..+. +..|+.
T Consensus 153 ~~~---------~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~v 188 (257)
T 3tl3_A 153 AFD---------GQIGQAAYSASKGGVVGMTLPIARDLA--SHRIRV 188 (257)
T ss_dssp --C---------CHHHHHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred hcC---------CCCCCccHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 221 111111244555555566667777765 345653
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.27 E-value=4.6e-06 Score=73.23 Aligned_cols=147 Identities=15% Similarity=0.148 Sum_probs=86.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC---hhhhcCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD---AVEACTG 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~---~~~al~~ 81 (320)
.++|+||||+|++|.+++..|++.|. +|++.++++ +.++ ++.. .... .++ ..+ ..+.+.+
T Consensus 19 ~k~vlVTGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~----~~~~-~~~~-~D~--~~~~~~~~~~~~~ 81 (249)
T 1o5i_A 19 DKGVLVLAASRGIGRAVADVLSQEGA-------EVTICARNE--ELLK----RSGH-RYVV-CDL--RKDLDLLFEKVKE 81 (249)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHH----HTCS-EEEE-CCT--TTCHHHHHHHSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHH----hhCC-eEEE-eeH--HHHHHHHHHHhcC
Confidence 46899999999999999999999987 899999863 2211 1110 0000 122 112 2333458
Q ss_pred CcEEEEeCCCCCCCC---CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCC
Q 020875 82 VNIAVMVGGFPRKEG---ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK 151 (320)
Q Consensus 82 aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~ 151 (320)
.|++|+.||...... .+ ....+..|+... +.+++.+++.. ..++|++|+.... .+.+..
T Consensus 82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~~~~~~ 150 (249)
T 1o5i_A 82 VDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIVAITSFSVI---------SPIENL 150 (249)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SCCTTB
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcchHhc---------CCCCCC
Confidence 999999999754211 12 234566776554 45556665553 3678888764321 122322
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
-.|+.++.....+-+.+++.+. +..|+.
T Consensus 151 ~~Y~~sK~a~~~~~~~la~e~~--~~gi~v 178 (249)
T 1o5i_A 151 YTSNSARMALTGFLKTLSFEVA--PYGITV 178 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred chHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 2455555555566666777654 345553
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.1e-06 Score=78.85 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=66.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHH-HHh---cc-cC------CCCcceEEeC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-ELV---DA-AF------PLLKGVVATT 73 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~-dl~---~~-~~------~~~~~v~~~~ 73 (320)
.+||+|+| +|.+|+.++..|+..|+ +|+++|++++ +...... .+. .. .. .....++.++
T Consensus 54 i~kVaVIG-aG~MG~~IA~~la~aG~-------~V~l~D~~~e--~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~ 123 (460)
T 3k6j_A 54 VNSVAIIG-GGTMGKAMAICFGLAGI-------ETFLVVRNEQ--RCKQELEVMYAREKSFKRLNDKRIEKINANLKITS 123 (460)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCHH--HHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEES
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEECcHH--HHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeC
Confidence 47999999 59999999999999997 8999999752 2211110 111 10 00 0124567777
Q ss_pred ChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEE
Q 020875 74 DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128 (320)
Q Consensus 74 ~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~vi 128 (320)
++ +++++||+||.+.. .+....+++.+.+.++++|+++++
T Consensus 124 dl-~al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIla 163 (460)
T 3k6j_A 124 DF-HKLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCIFG 163 (460)
T ss_dssp CG-GGCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred CH-HHHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 76 58999999999852 123445667777888876776443
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.2e-06 Score=81.63 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=65.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHH----hcccC--C--------CC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL----VDAAF--P--------LL 66 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl----~~~~~--~--------~~ 66 (320)
|+++.+||+|+| +|.+|+.++..|+..|+ +|+++|+++ ++++.....+ ..... . ..
T Consensus 1 Msm~~~kVgVIG-aG~MG~~IA~~la~aG~-------~V~l~D~~~--e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~ 70 (483)
T 3mog_A 1 MSLNVQTVAVIG-SGTMGAGIAEVAASHGH-------QVLLYDISA--EALTRAIDGIHARLNSRVTRGKLTAETCERTL 70 (483)
T ss_dssp ---CCCCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSCH--HHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHH
T ss_pred CCCCCCEEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 665667999999 59999999999999997 799999974 3333221111 11100 0 01
Q ss_pred cceEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEE
Q 020875 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKV 127 (320)
Q Consensus 67 ~~v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~v 127 (320)
..++.++++ +++++||+||.+.. . +....+++.+.+.++.++++++
T Consensus 71 ~~i~~~~~~-~~~~~aDlVIeAVp--e------------~~~vk~~v~~~l~~~~~~~~Il 116 (483)
T 3mog_A 71 KRLIPVTDI-HALAAADLVIEAAS--E------------RLEVKKALFAQLAEVCPPQTLL 116 (483)
T ss_dssp HTEEEECCG-GGGGGCSEEEECCC--C------------CHHHHHHHHHHHHHHSCTTCEE
T ss_pred hceeEeCCH-HHhcCCCEEEEcCC--C------------cHHHHHHHHHHHHHhhccCcEE
Confidence 256677776 57999999999752 1 1234456666777776566643
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.9e-06 Score=75.35 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=88.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE-ecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~-D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
++|+||||+|++|.+++..|++.|. +|++. +++ .+.++....++...... ...++....+..++
T Consensus 27 k~vlITGas~gIG~a~a~~l~~~G~-------~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 97 (272)
T 4e3z_A 27 PVVLVTGGSRGIGAAVCRLAARQGW-------RVGVNYAAN--REAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSA 97 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC--HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCC--hhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 5799999999999999999999987 77666 443 23333333333322110 01122211122222
Q ss_pred ----cCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHHHHHHHHhhhc-----CCCeEEEEEcCcchhhHHHHH
Q 020875 79 ----CTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYKAQASALEQHA-----APNCKVLVVANPANTNALILK 142 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~~i~~~i~~~~-----~~~~~viv~snP~~~~~~~~~ 142 (320)
+...|+||+.||...... .+ ..+.+..|+.....+.+.+.+.- ...+++|++|+.....
T Consensus 98 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 172 (272)
T 4e3z_A 98 VDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAIL----- 172 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHH-----
T ss_pred HHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhcc-----
Confidence 237899999999754211 12 23467788776666655544331 1246788888654211
Q ss_pred HHCCCCCCCc-EEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~-i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+.++.. .|+.++.....+-+.+++.+. +..|+
T Consensus 173 ----~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~ 205 (272)
T 4e3z_A 173 ----GSATQYVDYAASKAAIDTFTIGLAREVA--AEGIR 205 (272)
T ss_dssp ----CCTTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred ----CCCCCcchhHHHHHHHHHHHHHHHHHHH--HcCcE
Confidence 122122 366666666677777777764 33455
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.25 E-value=8.1e-06 Score=78.53 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc--CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-------------Ccc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG--VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-------------LKG 68 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~--~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-------------~~~ 68 (320)
++|||+|+| +|.+|..++..|++. |+ +|+++|+++ ++++. +.....+. ...
T Consensus 4 ~~mkI~VIG-~G~mG~~lA~~La~~g~G~-------~V~~~d~~~--~~~~~----l~~g~~~i~e~~l~~~~~~~~~~~ 69 (467)
T 2q3e_A 4 EIKKICCIG-AGYVGGPTCSVIAHMCPEI-------RVTVVDVNE--SRINA----WNSPTLPIYEPGLKEVVESCRGKN 69 (467)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHHCTTS-------EEEEECSCH--HHHHH----HTSSSCSSCCTTHHHHHHHHBTTT
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhcCCCC-------EEEEEECCH--HHHHH----HhCCCCCcCCCCHHHHHHHhhcCC
Confidence 357999999 699999999999988 55 899999874 33332 22111000 124
Q ss_pred eEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEE-cCcchh
Q 020875 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPANT 136 (320)
Q Consensus 69 v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~-snP~~~ 136 (320)
+..+++..+++++||+||++...|......... -..+...+.+.++.+.++..++..+|.. |+|.+.
T Consensus 70 ~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~ 137 (467)
T 2q3e_A 70 LFFSTNIDDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRA 137 (467)
T ss_dssp EEEESCHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTH
T ss_pred EEEECCHHHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchH
Confidence 677778888899999999998765432110000 0122344556666666654344555544 456654
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.8e-06 Score=72.67 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=85.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-------
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA------- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------- 78 (320)
++++||||+|.+|.+++..|++.|. +|++.|+++ ++++... ++....... ..+ ...+..++
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~-~l~~~~~~~-~~~-d~~~v~~~~~~~~~~ 69 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGH-------TVACHDESF--KQKDELE-AFAETYPQL-KPM-SEQEPAELIEAVTSA 69 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-------EEEECCGGG--GSHHHHH-HHHHHCTTS-EEC-CCCSHHHHHHHHHHH
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHH-HHHhcCCcE-EEE-CHHHHHHHHHHHHHH
Confidence 4799999999999999999999987 899999864 3333221 232211000 000 11222222
Q ss_pred cCCCcEEEEeCCCC-CCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 79 CTGVNIAVMVGGFP-RKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 79 l~~aDvVi~~ag~~-~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+...|++|+.||.. .... .+ ....+..|+.....+.+.+ ++.. ..++|++|+.... .+
T Consensus 70 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~---------~~ 138 (254)
T 1zmt_A 70 YGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPF---------GP 138 (254)
T ss_dssp HSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTT---------SC
T ss_pred hCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCcccc---------cC
Confidence 34789999999975 3111 12 2346677877666655554 3432 3678888764321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.|..-.|+.++.....+-+.+++.++
T Consensus 139 ~~~~~~Y~~sK~a~~~~~~~la~e~~ 164 (254)
T 1zmt_A 139 WKELSTYTSARAGACTLANALSKELG 164 (254)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 23222466666666667777777764
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.5e-06 Score=72.94 Aligned_cols=148 Identities=11% Similarity=0.049 Sum_probs=89.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE-e--cCCccchhHHHHHHHhcccCCCCcceEEeCChh------
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-D--IPPAAEALNGVKMELVDAAFPLLKGVVATTDAV------ 76 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~-D--~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~------ 76 (320)
++++||||+|.+|.+++..|++.|. +|++. + +++ ++++....++ .. .++....+..
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~~~~r~~--~~~~~~~~~~-~~-----~~~~~~~~v~~~~~~~ 66 (244)
T 1zmo_A 2 VIALVTHARHFAGPAAVEALTQDGY-------TVVCHDASFADA--AERQRFESEN-PG-----TIALAEQKPERLVDAT 66 (244)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-------EEEECCGGGGSH--HHHHHHHHHS-TT-----EEECCCCCGGGHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEecCCcCCH--HHHHHHHHHh-CC-----CcccCHHHHHHHHHHH
Confidence 4799999999999999999999987 88888 5 753 3333322222 10 0111111222
Q ss_pred -hhcCCCcEEEEeCCCCCC---C---CCC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHH
Q 020875 77 -EACTGVNIAVMVGGFPRK---E---GME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 77 -~al~~aDvVi~~ag~~~~---~---~~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
+.+...|++|+.||.... . ..+ ....+..|+.....+.+.+. +. ...++|++|+-...
T Consensus 67 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~~~~------ 138 (244)
T 1zmo_A 67 LQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA--GGASVIFITSSVGK------ 138 (244)
T ss_dssp GGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCGGGT------
T ss_pred HHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECChhhC------
Confidence 223478999999997543 1 112 33467788776666655554 33 24678888864321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 139 ---~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v 172 (244)
T 1zmo_A 139 ---KPLAYNPLYGPARAATVALVESAAKTLS--RDGILL 172 (244)
T ss_dssp ---SCCTTCTTHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 1233333567676666667777777764 345653
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.9e-06 Score=75.45 Aligned_cols=158 Identities=11% Similarity=0.090 Sum_probs=90.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEe-cCCccchhHHHHHHHh-cccCC---CCcceEEeC-----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLD-IPPAAEALNGVKMELV-DAAFP---LLKGVVATT----- 73 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D-~~~~~~~~~~~~~dl~-~~~~~---~~~~v~~~~----- 73 (320)
+.++++||||+|.+|.+++..|++.|. .|++.+ +++ ++++....++. ..... ...++....
T Consensus 8 ~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (291)
T 1e7w_A 8 TVPVALVTGAAKRLGRSIAEGLHAEGY-------AVCLHYHRSA--AEANALSATLNARRPNSAITVQADLSNVATAPVS 78 (291)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEcCCCH--HHHHHHHHHHhhhcCCeeEEEEeecCCccccccc
Confidence 446899999999999999999999987 899999 763 33433333332 10000 111222111
Q ss_pred ------------Chhhhc-------CCCcEEEEeCCCCCCCC---CC--------------H---HHHHHhhHHHHHHHH
Q 020875 74 ------------DAVEAC-------TGVNIAVMVGGFPRKEG---ME--------------R---KDVMSKNVSIYKAQA 114 (320)
Q Consensus 74 ------------~~~~al-------~~aDvVi~~ag~~~~~~---~~--------------r---~~~~~~n~~~~~~i~ 114 (320)
+..+.+ ...|++|+.||...... .+ . ...+..|+.....+.
T Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~ 158 (291)
T 1e7w_A 79 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 158 (291)
T ss_dssp ----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHH
Confidence 222222 37899999999753211 12 1 235667776666655
Q ss_pred HHHhhhc--CC------CeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 115 SALEQHA--AP------NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 115 ~~i~~~~--~~------~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.+.++- .. ..++|++|+.... .+.|..-.|+.++.-...+-+.+++.++ +..|+.
T Consensus 159 ~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 222 (291)
T 1e7w_A 159 KAFAHRVAGTPAKHRGTNYSIINMVDAMTN---------QPLLGYTIYTMAKGALEGLTRSAALELA--PLQIRV 222 (291)
T ss_dssp HHHHHHHHTSCGGGSCSCEEEEEECCTTTT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred HHHHHHHHhcCCCCCCCCcEEEEEechhhc---------CCCCCCchhHHHHHHHHHHHHHHHHHHH--hcCeEE
Confidence 5544321 02 4678888764321 1233323466666666667777777764 345653
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.23 E-value=8e-06 Score=72.71 Aligned_cols=164 Identities=18% Similarity=0.130 Sum_probs=92.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-----chhHHHHHHHhcccCC---CCcceEEe
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-----EALNGVKMELVDAAFP---LLKGVVAT 72 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-----~~~~~~~~dl~~~~~~---~~~~v~~~ 72 (320)
|+.+.++++||||+|.+|.+++..|++.|. +|++.+++... +.++....++...... ...++...
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 74 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGA-------NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREE 74 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence 566678999999999999999999999987 89999987531 0122222222211100 11122111
Q ss_pred CChhh-------hcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--CCCeEEEEEcCcchhh
Q 020875 73 TDAVE-------ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--APNCKVLVVANPANTN 137 (320)
Q Consensus 73 ~~~~~-------al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~snP~~~~ 137 (320)
.+..+ .+...|++|+.||...... .+ ....+..|+.....+.+.+...- ...+++|++|+.....
T Consensus 75 ~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 154 (274)
T 3e03_A 75 DQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLN 154 (274)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcC
Confidence 12222 2347899999999753221 12 23466788877666666654321 1346788887654332
Q ss_pred HHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
... ++..-.|+.++.-...+-+.+|+.++ +..|+
T Consensus 155 ~~~-------~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~ 188 (274)
T 3e03_A 155 PAW-------WGAHTGYTLAKMGMSLVTLGLAAEFG--PQGVA 188 (274)
T ss_dssp HHH-------HHHCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred CCC-------CCCCchHHHHHHHHHHHHHHHHHHhh--hcCEE
Confidence 210 00011245555555566677777764 33455
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-06 Score=79.47 Aligned_cols=102 Identities=21% Similarity=0.217 Sum_probs=65.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHH-HHh--cccCCCCcceEEeCChhhhcCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-ELV--DAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~-dl~--~~~~~~~~~v~~~~~~~~al~~ 81 (320)
+|||+|+| +|.+|+.++..|.+.|+ +|.++|+++ .++.... .+. .........+..+++.. ++++
T Consensus 3 ~mkI~IiG-aG~~G~~~a~~L~~~g~-------~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 70 (335)
T 3ghy_A 3 LTRICIVG-AGAVGGYLGARLALAGE-------AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRATHDAA-ALGE 70 (335)
T ss_dssp CCCEEEES-CCHHHHHHHHHHHHTTC-------CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEEESCHH-HHCC
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC-------EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeEECCHH-HcCC
Confidence 57999999 69999999999999886 799999742 2221110 010 00000112344555654 4799
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
+|+||++... ..+.++++.++.+-.++..++.+.|.+
T Consensus 71 ~D~Vilavk~----------------~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 71 QDVVIVAVKA----------------PALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp CSEEEECCCH----------------HHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred CCEEEEeCCc----------------hhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 9999998521 224566677776654677788888985
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.21 E-value=3.2e-06 Score=74.85 Aligned_cols=156 Identities=11% Similarity=0.043 Sum_probs=91.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhh---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEA--- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~a--- 78 (320)
.++++||||+|.+|.+++..|++.|. +|++.|+++ ++++....++...... ...+++...+..+.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGA-------DLVLAARTV--ERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDE 81 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999999997 899999864 4444444444322111 11122222222222
Q ss_pred ----cCCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHHhhhcC-CCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 ----CTGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASALEQHAA-PNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 ----l~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~-~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+...|++|+.||.... + ..+ ..+.+..|+.....+.+.+...-. ..+++|++|+.... .
T Consensus 82 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~---------~ 152 (264)
T 3ucx_A 82 TMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVR---------H 152 (264)
T ss_dssp HHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGG---------C
T ss_pred HHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhc---------c
Confidence 3378999999987421 1 112 334577787777666665543210 12578888764421 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+.+..-.|+.++.-...+-+.+|+.++ +..|+
T Consensus 153 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~ 184 (264)
T 3ucx_A 153 SQAKYGAYKMAKSALLAMSQTLATELG--EKGIR 184 (264)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTCE
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhC--ccCeE
Confidence 233223466666656667677777764 34455
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-06 Score=73.62 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEE------eCC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA------TTD 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~------~~~ 74 (320)
|+.+.++++||||+|++|.+++..|++ +. .|+++++++ +.++... ++.... ....++.. ...
T Consensus 1 m~l~~k~vlITGas~gIG~~~a~~l~~-g~-------~v~~~~r~~--~~~~~~~-~~~~~~-~~~~D~~~~~~~~~~~~ 68 (245)
T 3e9n_A 1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DH-------IVYALGRNP--EHLAALA-EIEGVE-PIESDIVKEVLEEGGVD 68 (245)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHTT-TS-------EEEEEESCH--HHHHHHH-TSTTEE-EEECCHHHHHHTSSSCG
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHhC-CC-------eEEEEeCCH--HHHHHHH-hhcCCc-ceecccchHHHHHHHHH
Confidence 666778999999999999999999977 54 788999863 3232211 111000 00001100 011
Q ss_pred hhhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 75 AVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
..+.+...|++|+.||...... .+ ....+..|+.....+ .+.+++.. +++|++|+....
T Consensus 69 ~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---g~iv~isS~~~~-------- 137 (245)
T 3e9n_A 69 KLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS---GCVIYINSGAGN-------- 137 (245)
T ss_dssp GGTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEEC-------------
T ss_pred HHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CeEEEEcCcccc--------
Confidence 2233457899999999754221 11 234566777664444 44444432 567777754321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|..-.|+.++.-...+-..+++.++
T Consensus 138 -~~~~~~~~Y~asK~a~~~~~~~la~e~~ 165 (245)
T 3e9n_A 138 -GPHPGNTIYAASKHALRGLADAFRKEEA 165 (245)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHG
T ss_pred -cCCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 1222223466666666667777777764
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=4.8e-06 Score=71.05 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=62.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+||+|++|++++..|...|+ +|.++|+++ ++++....++.... . ..++.. .+..++++++|+|
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~D~V 68 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH-------EIVVGSRRE--EKAEAKAAEYRRIA-G-DASITG-MKNEDAAEACDIA 68 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESSH--HHHHHHHHHHHHHH-S-SCCEEE-EEHHHHHHHCSEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcccc-c-cCCCCh-hhHHHHHhcCCEE
Confidence 5899999889999999999998886 899999864 33322211111000 0 012332 4567788999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
|++... +. ..++++.+.... ++..++..+|+.+
T Consensus 69 i~~~~~---------~~-------~~~~~~~l~~~~-~~~~vi~~~~g~~ 101 (212)
T 1jay_A 69 VLTIPW---------EH-------AIDTARDLKNIL-REKIVVSPLVPVS 101 (212)
T ss_dssp EECSCH---------HH-------HHHHHHHTHHHH-TTSEEEECCCCEE
T ss_pred EEeCCh---------hh-------HHHHHHHHHHHc-CCCEEEEcCCCcC
Confidence 998631 11 223333443333 3567788888764
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-06 Score=76.24 Aligned_cols=158 Identities=12% Similarity=0.114 Sum_probs=91.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc----------cchhHHHHHHHhcccCC---CCcceEE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA----------AEALNGVKMELVDAAFP---LLKGVVA 71 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~----------~~~~~~~~~dl~~~~~~---~~~~v~~ 71 (320)
.++++||||+|.||.+++..|++.|. +|+++|++.+ .+.++.....+...... ...++..
T Consensus 46 gk~~lVTGas~GIG~aia~~la~~G~-------~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d 118 (317)
T 3oec_A 46 GKVAFITGAARGQGRTHAVRLAQDGA-------DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRD 118 (317)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 35899999999999999999999997 8999987521 12222222222211100 0112221
Q ss_pred eCChhhh-------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcc
Q 020875 72 TTDAVEA-------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPA 134 (320)
Q Consensus 72 ~~~~~~a-------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~ 134 (320)
..+..+. +...|++|+.||..... ..+ ....+..|+.....+.+.+ .+.. ..+++|++|+..
T Consensus 119 ~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~~g~Iv~isS~~ 197 (317)
T 3oec_A 119 LASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERG-QGGSVIFVSSTV 197 (317)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC-SCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCCEEEEECcHH
Confidence 1122222 33789999999975421 122 3346778877666655554 3333 357788888654
Q ss_pred hhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 135 NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.. .+.|..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 198 ~~---------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v 233 (317)
T 3oec_A 198 GL---------RGAPGQSHYAASKHGVQGLMLSLANEVG--RHNIRV 233 (317)
T ss_dssp GS---------SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred hc---------CCCCCCcchHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 22 2233333566666666677777887764 334553
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=77.08 Aligned_cols=112 Identities=17% Similarity=0.232 Sum_probs=74.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--------------CcceE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--------------LKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v~ 70 (320)
..+|+|+| .|++|.+++..|++.|+ +|+++|+++ ++++. +.....+. ...++
T Consensus 8 ~~~~~vIG-lG~vG~~~A~~La~~G~-------~V~~~D~~~--~kv~~----l~~g~~~~~epgl~~~~~~~~~~g~l~ 73 (446)
T 4a7p_A 8 SVRIAMIG-TGYVGLVSGACFSDFGH-------EVVCVDKDA--RKIEL----LHQNVMPIYEPGLDALVASNVKAGRLS 73 (446)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCS--TTHHH----HTTTCCSSCCTTHHHHHHHHHHTTCEE
T ss_pred ceEEEEEc-CCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH----HhcCCCCccCCCHHHHHHhhcccCCEE
Confidence 46999999 69999999999999997 899999975 33332 22211110 23578
Q ss_pred EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc-Ccch
Q 020875 71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPAN 135 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s-nP~~ 135 (320)
.+++..+++++||+||++.+.|...+.. ..++..+++.++.+.++..++..+|..| -|.+
T Consensus 74 ~ttd~~ea~~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pg 134 (446)
T 4a7p_A 74 FTTDLAEGVKDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVG 134 (446)
T ss_dssp EESCHHHHHTTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTT
T ss_pred EECCHHHHHhcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCch
Confidence 8889889999999999998777532111 1223445566666666554555555544 3443
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=6e-06 Score=73.63 Aligned_cols=155 Identities=11% Similarity=0.059 Sum_probs=92.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CC---CCcceEEeCChhhh--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP---LLKGVVATTDAVEA-- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~---~~~~v~~~~~~~~a-- 78 (320)
.++++||||+|.+|.+++..|++.|. +|++.|++. +++.....++.... .. ...++....+..++
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 97 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGC-------HTVIASRSL--PRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVD 97 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 36899999999999999999999987 899999874 33333333332211 00 11122221122222
Q ss_pred -----cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 -----CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 -----l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
+...|++|+.||...... .+ ....+..|+.....+.+.+. +.. .+++|++|+.....
T Consensus 98 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~------ 169 (277)
T 4fc7_A 98 QALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDH--GGVIVNITATLGNR------ 169 (277)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCSHHHH------
T ss_pred HHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhCC------
Confidence 337899999999643211 12 34467788877777766653 332 46788887653221
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.+..-.|+.++.-...+-+.+|+.++ +..|+.
T Consensus 170 ---~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v 202 (277)
T 4fc7_A 170 ---GQALQVHAGSAKAAVDAMTRHLAVEWG--PQNIRV 202 (277)
T ss_dssp ---TCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHHhh--hcCeEE
Confidence 222222456666656667777777764 345553
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.8e-06 Score=77.84 Aligned_cols=157 Identities=11% Similarity=0.090 Sum_probs=89.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEe-cCCccchhHHHHHHHh-cccC---CCCcceEEeC------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLD-IPPAAEALNGVKMELV-DAAF---PLLKGVVATT------ 73 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D-~~~~~~~~~~~~~dl~-~~~~---~~~~~v~~~~------ 73 (320)
.++++||||+|.||.+++..|++.|. +|++.+ +++ ++++....++. .... ....++....
T Consensus 46 ~k~~lVTGas~GIG~aia~~La~~G~-------~Vv~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~ 116 (328)
T 2qhx_A 46 VPVALVTGAAKRLGRSIAEGLHAEGY-------AVCLHYHRSA--AEANALSATLNARRPNSAITVQADLSNVATAPVSG 116 (328)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSCH--HHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC---
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccc
Confidence 45899999999999999999999987 899999 753 33333333332 1000 0011222111
Q ss_pred -----------Chhhhc-------CCCcEEEEeCCCCCCCC---CC--------------H---HHHHHhhHHHHHHHHH
Q 020875 74 -----------DAVEAC-------TGVNIAVMVGGFPRKEG---ME--------------R---KDVMSKNVSIYKAQAS 115 (320)
Q Consensus 74 -----------~~~~al-------~~aDvVi~~ag~~~~~~---~~--------------r---~~~~~~n~~~~~~i~~ 115 (320)
+..+++ ...|++|+.||...... .+ . ...+..|+.....+.+
T Consensus 117 ~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~ 196 (328)
T 2qhx_A 117 ADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIK 196 (328)
T ss_dssp ----CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 222222 37899999999743211 11 2 2356777776666655
Q ss_pred HHhhhc--CC------CeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 116 ALEQHA--AP------NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 116 ~i~~~~--~~------~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+..+- .. ..++|++|+.... .+.+..-.|+.++.....+-+.+++.+. +..|+.
T Consensus 197 ~~~~~m~~~~~~~~~~~g~IV~isS~~~~---------~~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrv 259 (328)
T 2qhx_A 197 AFAHRVAGTPAKHRGTNYSIINMVDAMTN---------QPLLGYTIYTMAKGALEGLTRSAALELA--PLQIRV 259 (328)
T ss_dssp HHHHHHHHSCGGGSCSCEEEEEECCTTTT---------SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred HHHHHHHhcCCcCCCCCcEEEEECchhhc---------cCCCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEE
Confidence 554321 02 4678888764321 1223223466666666667777777764 345553
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.4e-06 Score=77.07 Aligned_cols=110 Identities=20% Similarity=0.274 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCC-CCCeEEEEEecCCcc--chhHHHHHHHhcccC------CCCcceEEeCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGT-DQPVILHMLDIPPAA--EALNGVKMELVDAAF------PLLKGVVATTD 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~-~~~~ev~l~D~~~~~--~~~~~~~~dl~~~~~------~~~~~v~~~~~ 74 (320)
+|.||+|+| +|..|++|+..|.++++-.. ....+|.|+.++++. +++ .....-.|... +++.++..++|
T Consensus 33 ~p~KI~ViG-aGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~-~e~in~~~~N~~YLpgv~Lp~~i~~t~d 110 (391)
T 4fgw_A 33 KPFKVTVIG-SGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKL-TEIINTRHQNVKYLPGITLPDNLVANPD 110 (391)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBH-HHHHTTTCCBTTTBTTCCCCSSEEEESC
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHH-HHHHHhcCcCcccCCCCcCCCCcEEeCC
Confidence 578999999 59999999999998754100 001268899876421 111 11122223222 23467899999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 75 AVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
+.++++++|+||++. |. +.++++++.++.+-+++..+|.++
T Consensus 111 l~~al~~ad~ii~av--Ps--------------~~~r~~l~~l~~~~~~~~~iv~~~ 151 (391)
T 4fgw_A 111 LIDSVKDVDIIVFNI--PH--------------QFLPRICSQLKGHVDSHVRAISCL 151 (391)
T ss_dssp HHHHHTTCSEEEECS--CG--------------GGHHHHHHHHTTTSCTTCEEEECC
T ss_pred HHHHHhcCCEEEEEC--Ch--------------hhhHHHHHHhccccCCCceeEEec
Confidence 999999999999974 32 345778888887765566666654
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=98.17 E-value=4.9e-06 Score=73.49 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=91.2
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-c---CCCCcceEEeCChhh
Q 020875 4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-A---FPLLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~---~~~~~~v~~~~~~~~ 77 (320)
+.++++||||+ |.+|.+++..|++.|. .|++.+++.. ...+....++... . .....++....+..+
T Consensus 19 ~~k~vlITGas~~~giG~~~a~~l~~~G~-------~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~ 90 (267)
T 3gdg_A 19 KGKVVVVTGASGPKGMGIEAARGCAEMGA-------AVAITYASRA-QGAEENVKELEKTYGIKAKAYKCQVDSYESCEK 90 (267)
T ss_dssp TTCEEEETTCCSSSSHHHHHHHHHHHTSC-------EEEECBSSSS-SHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHCCC-------eEEEEeCCcc-hhHHHHHHHHHHhcCCceeEEecCCCCHHHHHH
Confidence 44689999999 8999999999999987 7888887642 2212223333211 1 011122222222222
Q ss_pred h-------cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHH
Q 020875 78 A-------CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 78 a-------l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~ 140 (320)
+ +...|++|+.||...... .+ ....+..|+.....+.+.+ ++.. .+++|++|+....
T Consensus 91 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~---- 164 (267)
T 3gdg_A 91 LVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG--TGSLVITASMSGH---- 164 (267)
T ss_dssp HHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT----
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC--CceEEEEcccccc----
Confidence 2 346799999999754221 12 2346777877666665555 4443 3577777765422
Q ss_pred HHHHCCCCCCCc-EEEeehhhHHHHHHHHHHHcCC
Q 020875 141 LKEFAPSIPAKN-ITCLTRLDHNRALGQISEKLNV 174 (320)
Q Consensus 141 ~~~~~~~~~~~~-i~~~t~ld~~r~~~~~a~~l~v 174 (320)
...+++.. .|+.++.-...+-+.+++.++-
T Consensus 165 ----~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 195 (267)
T 3gdg_A 165 ----IANFPQEQTSYNVAKAGCIHMARSLANEWRD 195 (267)
T ss_dssp ----SCCSSSCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ----ccCCCCCCCcchHHHHHHHHHHHHHHHHhcc
Confidence 12222222 5777777777788888888863
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.9e-06 Score=73.19 Aligned_cols=148 Identities=13% Similarity=0.088 Sum_probs=86.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-------
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA------- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------- 78 (320)
++++||||+|.+|.+++..|++.|.- ..|++.++++ ++++....++.........++....+..+.
T Consensus 3 k~~lVTGas~GIG~aia~~l~~~g~~-----~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (254)
T 3kzv_A 3 KVILVTGVSRGIGKSIVDVLFSLDKD-----TVVYGVARSE--APLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKG 75 (254)
T ss_dssp CEEEECSTTSHHHHHHHHHHHHHCSS-----CEEEEEESCH--HHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHhcCCC-----eEEEEecCCH--HHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987520 1788888763 334333222211110011122211122222
Q ss_pred cCCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 79 CTGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+...|++|+.||.... + ..+ ....+..|+.....+.+.+ ++.. +++|++|+.... .+
T Consensus 76 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~---g~iv~isS~~~~---------~~ 143 (254)
T 3kzv_A 76 HGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN---GNVVFVSSDACN---------MY 143 (254)
T ss_dssp HSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCSCCC---------CS
T ss_pred cCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---CeEEEEcCchhc---------cC
Confidence 3378999999997432 1 122 2346777877766666655 4432 578888764321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHc
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l 172 (320)
.+..-.|+.++.-...+-+.+|+.+
T Consensus 144 ~~~~~~Y~asK~a~~~~~~~la~e~ 168 (254)
T 3kzv_A 144 FSSWGAYGSSKAALNHFAMTLANEE 168 (254)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHHHHHHHHhhc
Confidence 3333356667666667777788776
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-05 Score=71.73 Aligned_cols=107 Identities=15% Similarity=0.228 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHH-HhcccCC--CCcceEEeC--Chhhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-LVDAAFP--LLKGVVATT--DAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~d-l~~~~~~--~~~~v~~~~--~~~~a 78 (320)
++|||+|+| +|.+|+.++..|...|+ +|.++|+++ ++++..... +.....+ ...++..++ +..++
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (316)
T 2ew2_A 2 NAMKIAIAG-AGAMGSRLGIMLHQGGN-------DVTLIDQWP--AHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQ 71 (316)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTT
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCCC-------cEEEEECCH--HHHHHHHhCCEEEEeCCCeeEecceeecchhhccc
Confidence 357999999 59999999999999887 899999863 333322111 0000000 001122222 22234
Q ss_pred cCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 79 CTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
++++|+||++... ....++++.+..+..++..++.++|..+.
T Consensus 72 ~~~~d~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~ 113 (316)
T 2ew2_A 72 NEQVDLIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGH 113 (316)
T ss_dssp SCCCSEEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred CCCCCEEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 4599999998531 11355666677665456777777887653
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=9e-06 Score=71.95 Aligned_cols=157 Identities=14% Similarity=0.097 Sum_probs=90.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al-- 79 (320)
.++|+||||+|++|.+++..|++.|. +|++.+... .+.++....++...... ...++....+..+++
T Consensus 26 ~k~vlVTGas~gIG~~la~~l~~~G~-------~v~i~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 97 (267)
T 4iiu_A 26 SRSVLVTGASKGIGRAIARQLAADGF-------NIGVHYHRD-AAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEH 97 (267)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCc-hHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 35899999999999999999999987 676655432 23333333333222110 011222212222223
Q ss_pred -----CCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHh----hhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 80 -----TGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALE----QHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 80 -----~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~----~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
...|++|+.||...... . +....+..|+.....+.+.+. +.. ..+++|++|+.... .
T Consensus 98 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~g~iv~isS~~~~-------~ 169 (267)
T 4iiu_A 98 EIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGAR-QGGRIITLSSVSGV-------M 169 (267)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCHHHH-------H
T ss_pred HHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEEcchHhc-------c
Confidence 37899999999754221 1 234567788777766666542 222 45778888864321 1
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.+..-.|+.++.....+-..+++.+. +..|+.
T Consensus 170 --~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 202 (267)
T 4iiu_A 170 --GNRGQVNYSAAKAGIIGATKALAIELA--KRKITV 202 (267)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 233333566666666667777777764 334553
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.9e-06 Score=73.27 Aligned_cols=156 Identities=11% Similarity=0.084 Sum_probs=89.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCChhhh----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTDAVEA---- 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~~~~a---- 78 (320)
++++||||+|.+|.+++..|++.|. .|++.+++. .+.++.....+....... ..++....+..++
T Consensus 26 k~vlITGas~gIG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 97 (269)
T 3gk3_A 26 RVAFVTGGMGGLGAAISRRLHDAGM-------AVAVSHSER-NDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKV 97 (269)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEECSC-HHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCc-hHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4788999999999999999999987 788888543 233332222232211110 1122211122222
Q ss_pred ---cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhh---cCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 79 ---CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQH---AAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 79 ---l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~---~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+...|++|+.||..... ..+ ....+..|+.....+.+.+... . ..+++|++|+.... .
T Consensus 98 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~---------~ 167 (269)
T 3gk3_A 98 LADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIGSVNGS---------R 167 (269)
T ss_dssp HHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHH---------H
T ss_pred HHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeCChhhc---------c
Confidence 23789999999975421 112 2345677877766665554331 2 34678888864321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.+..-.|+.++.-...+-+.+++.+. +..|+.
T Consensus 168 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v 200 (269)
T 3gk3_A 168 GAFGQANYASAKAGIHGFTKTLALETA--KRGITV 200 (269)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhh--hcCCEE
Confidence 233333566666666667777777764 234553
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.14 E-value=3e-06 Score=73.18 Aligned_cols=96 Identities=14% Similarity=0.142 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEE-EecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHM-LDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l-~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
+++|||+|+| +|.+|.+++..|.+.|+ +|.+ +|+++ ++++....++.. .. ..+..+++++
T Consensus 21 m~mmkI~IIG-~G~mG~~la~~l~~~g~-------~V~~v~~r~~--~~~~~l~~~~g~-------~~--~~~~~~~~~~ 81 (220)
T 4huj_A 21 QSMTTYAIIG-AGAIGSALAERFTAAQI-------PAIIANSRGP--ASLSSVTDRFGA-------SV--KAVELKDALQ 81 (220)
T ss_dssp GGSCCEEEEE-CHHHHHHHHHHHHHTTC-------CEEEECTTCG--GGGHHHHHHHTT-------TE--EECCHHHHTT
T ss_pred hcCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCCH--HHHHHHHHHhCC-------Cc--ccChHHHHhc
Confidence 3468999999 69999999999999886 6777 88864 444433322210 11 1244567899
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
+|+||++.. . ..+.++++.+.. . ++..+|.++||..
T Consensus 82 aDvVilavp--~--------------~~~~~v~~~l~~-~-~~~ivi~~~~g~~ 117 (220)
T 4huj_A 82 ADVVILAVP--Y--------------DSIADIVTQVSD-W-GGQIVVDASNAID 117 (220)
T ss_dssp SSEEEEESC--G--------------GGHHHHHTTCSC-C-TTCEEEECCCCBC
T ss_pred CCEEEEeCC--h--------------HHHHHHHHHhhc-c-CCCEEEEcCCCCC
Confidence 999999862 1 123445555554 3 4557788889874
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-05 Score=71.32 Aligned_cols=97 Identities=21% Similarity=0.271 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|...+|||+|+|++|.+|++++..|...|+ +|.++|+++ ++++. +.+.. +.. .+..++++
T Consensus 7 ~~~mmm~I~iIG~tG~mG~~la~~l~~~g~-------~V~~~~r~~--~~~~~----~~~~g------~~~-~~~~~~~~ 66 (286)
T 3c24_A 7 NDVGPKTVAILGAGGKMGARITRKIHDSAH-------HLAAIEIAP--EGRDR----LQGMG------IPL-TDGDGWID 66 (286)
T ss_dssp CSCCCCEEEEETTTSHHHHHHHHHHHHSSS-------EEEEECCSH--HHHHH----HHHTT------CCC-CCSSGGGG
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHH----HHhcC------CCc-CCHHHHhc
Confidence 343357999999449999999999999886 899999863 33322 21111 111 24567789
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
++|+||++... ..+.++++.+..+..++..++..|+.
T Consensus 67 ~aDvVi~av~~----------------~~~~~v~~~l~~~l~~~~ivv~~s~~ 103 (286)
T 3c24_A 67 EADVVVLALPD----------------NIIEKVAEDIVPRVRPGTIVLILDAA 103 (286)
T ss_dssp TCSEEEECSCH----------------HHHHHHHHHHGGGSCTTCEEEESCSH
T ss_pred CCCEEEEcCCc----------------hHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 99999998521 11355566666654356655555554
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-05 Score=72.04 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=94.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc--C---CCCcceEEeCChhhh-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--F---PLLKGVVATTDAVEA- 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~--~---~~~~~v~~~~~~~~a- 78 (320)
.++++||||+|.||.+++..|++.|.-. ..|++.+++. ++++....++.... . ....++....+..++
T Consensus 33 ~k~~lVTGas~GIG~aia~~l~~~G~~~----~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~ 106 (287)
T 3rku_A 33 KKTVLITGASAGIGKATALEYLEASNGD----MKLILAARRL--EKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFI 106 (287)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHHHTTC----SEEEEEESCH--HHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHH
T ss_pred CCEEEEecCCChHHHHHHHHHHHcCCCC----ceEEEEECCH--HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 3689999999999999999999876411 2688999864 44444333443211 0 011222222233222
Q ss_pred ------cCCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHH
Q 020875 79 ------CTGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 79 ------l~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
+...|++|+.||.... + ..+ ..+.+..|+.....+.+.+ ++.. .+++|++|+....
T Consensus 107 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~----- 179 (287)
T 3rku_A 107 ENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN--SGDIVNLGSIAGR----- 179 (287)
T ss_dssp HTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGT-----
T ss_pred HHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECChhhc-----
Confidence 2368999999997531 1 112 3456778877766666655 4432 4678888764421
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++.-...+-+.++..+. +..|+.
T Consensus 180 ----~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrv 213 (287)
T 3rku_A 180 ----DAYPTGSIYCASKFAVGAFTDSLRKELI--NTKIRV 213 (287)
T ss_dssp ----SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSSCEE
T ss_pred ----CCCCCCchHHHHHHHHHHHHHHHHHHhh--hcCCEE
Confidence 2333333567776666677778888875 445653
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=3.4e-06 Score=74.28 Aligned_cols=151 Identities=12% Similarity=0.093 Sum_probs=90.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh---cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc--cC---CCCcceEEeCChh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIAR---GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA--AF---PLLKGVVATTDAV 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~---~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~--~~---~~~~~v~~~~~~~ 76 (320)
.++++||||+|.+|.+++..|++ .|. +|++.|+++ ++++....++... .. ....+++...+..
T Consensus 6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~ 76 (259)
T 1oaa_A 6 CAVCVLTGASRGFGRALAPQLARLLSPGS-------VMLVSARSE--SMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQ 76 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTC-------EEEEEESCH--HHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHhhcCCC-------eEEEEeCCH--HHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHH
Confidence 35799999999999999999998 776 899999864 3344333333221 00 0011221111111
Q ss_pred hhc---------CCCc--EEEEeCCCCCCC-C-----CC---HHHHHHhhHHHHHHHHHHHhhhcC----CCeEEEEEcC
Q 020875 77 EAC---------TGVN--IAVMVGGFPRKE-G-----ME---RKDVMSKNVSIYKAQASALEQHAA----PNCKVLVVAN 132 (320)
Q Consensus 77 ~al---------~~aD--vVi~~ag~~~~~-~-----~~---r~~~~~~n~~~~~~i~~~i~~~~~----~~~~viv~sn 132 (320)
+++ ...| ++|+.||..... . .+ ....+..|+.....+.+.+...-. ..+++|++|+
T Consensus 77 ~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS 156 (259)
T 1oaa_A 77 RLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS 156 (259)
T ss_dssp HHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred HHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcC
Confidence 111 1357 999999974321 0 22 334678888888887777765421 1367888876
Q ss_pred cchhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 133 PANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 133 P~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.... .+.|..-.|+.++.....+-+.++..+.
T Consensus 157 ~~~~---------~~~~~~~~Y~asKaa~~~~~~~la~e~~ 188 (259)
T 1oaa_A 157 LCAL---------QPYKGWGLYCAGKAARDMLYQVLAAEEP 188 (259)
T ss_dssp GGGT---------SCCTTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred chhc---------CCCCCccHHHHHHHHHHHHHHHHHhhCC
Confidence 5421 2333333567777766777788888875
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-05 Score=72.83 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=68.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC-------cCCCCCCeEEEEEecCCccc---hhHHHHHHHhccc----CCCCcceE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGV-------MLGTDQPVILHMLDIPPAAE---ALNGVKMELVDAA----FPLLKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~-------~~~~~~~~ev~l~D~~~~~~---~~~~~~~dl~~~~----~~~~~~v~ 70 (320)
+|||+|+| +|.+|+.++..|.+.| + +|.++|+++... +++.....-.... ......+.
T Consensus 8 ~mkI~iIG-~G~mG~~~a~~l~~~g~~~~~~~~-------~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 79 (354)
T 1x0v_A 8 SKKVCIVG-SGNWGSAIAKIVGGNAAQLAQFDP-------RVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVV 79 (354)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHHHHCTTEEE-------EEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEE
T ss_pred CCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCC-------eEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeE
Confidence 47999999 6999999999999887 5 899999875210 2222111100000 01123466
Q ss_pred EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
.+++..++++++|+||++.. . . .+.++++.+..+..++..++..+|..
T Consensus 80 ~~~~~~~~~~~aD~Vilav~--~---~-----------~~~~v~~~i~~~l~~~~ivv~~~~Gi 127 (354)
T 1x0v_A 80 AVPDVVQAAEDADILIFVVP--H---Q-----------FIGKICDQLKGHLKANATGISLIKGV 127 (354)
T ss_dssp EESSHHHHHTTCSEEEECCC--G---G-----------GHHHHHHHHTTCSCTTCEEEECCCCB
T ss_pred EEcCHHHHHcCCCEEEEeCC--H---H-----------HHHHHHHHHHhhCCCCCEEEEECCcc
Confidence 67777788999999999852 1 1 23455666766654567777777754
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=98.10 E-value=6e-06 Score=74.23 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=72.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC----CcceEEe-CCh-----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL----LKGVVAT-TDA----- 75 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~----~~~v~~~-~~~----- 75 (320)
++|+||||+|.||.+++..|+++|. .|++.++++ ++++....++....... ..++... .+.
T Consensus 13 k~vlITGas~GIG~~~a~~L~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~ 83 (311)
T 3o26_A 13 RCAVVTGGNKGIGFEICKQLSSNGI-------MVVLTCRDV--TKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLAD 83 (311)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEecCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHH
Confidence 5799999999999999999999987 899999874 34444444443321110 0111111 111
Q ss_pred --hhhcCCCcEEEEeCCCCCCC---------------------------------CCC---HHHHHHhhHHHHHHHHHHH
Q 020875 76 --VEACTGVNIAVMVGGFPRKE---------------------------------GME---RKDVMSKNVSIYKAQASAL 117 (320)
Q Consensus 76 --~~al~~aDvVi~~ag~~~~~---------------------------------~~~---r~~~~~~n~~~~~~i~~~i 117 (320)
.+.+...|++|+.||+.... ..+ ....+..|+.....+.+.+
T Consensus 84 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~ 163 (311)
T 3o26_A 84 FIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVL 163 (311)
T ss_dssp HHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHh
Confidence 11234799999999975210 011 2234678877755555554
Q ss_pred hhhc--CCCeEEEEEcCcch
Q 020875 118 EQHA--APNCKVLVVANPAN 135 (320)
Q Consensus 118 ~~~~--~~~~~viv~snP~~ 135 (320)
...- .+.+++|++|+...
T Consensus 164 ~~~l~~~~~~~IV~isS~~~ 183 (311)
T 3o26_A 164 IPLLQLSDSPRIVNVSSSTG 183 (311)
T ss_dssp HHHHTTSSSCEEEEECCGGG
T ss_pred hHhhccCCCCeEEEEecCCc
Confidence 3321 13467888887553
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=72.75 Aligned_cols=112 Identities=19% Similarity=0.250 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al~ 80 (320)
.++||+|+| +|.+|+.++..|...|+ +|.++ .++ +.++....+=.....+ ....+..+++. ++++
T Consensus 18 ~~~kI~IiG-aGa~G~~~a~~L~~~G~-------~V~l~-~~~--~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 85 (318)
T 3hwr_A 18 QGMKVAIMG-AGAVGCYYGGMLARAGH-------EVILI-ARP--QHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQ 85 (318)
T ss_dssp --CEEEEES-CSHHHHHHHHHHHHTTC-------EEEEE-CCH--HHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGT
T ss_pred cCCcEEEEC-cCHHHHHHHHHHHHCCC-------eEEEE-EcH--hHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcC
Confidence 468999999 59999999999999887 89998 642 3333221110000011 11234455555 4578
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
++|+||++.... .+.++++.++.+..++..++.++|.++.... +.+.
T Consensus 86 ~~D~vilavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-l~~~ 132 (318)
T 3hwr_A 86 GADLVLFCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVENADT-LRSL 132 (318)
T ss_dssp TCSEEEECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHHH-HHHH
T ss_pred CCCEEEEEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHH-HHHH
Confidence 999999985211 1255667777665467778889998876543 3443
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.6e-06 Score=75.07 Aligned_cols=158 Identities=17% Similarity=0.052 Sum_probs=91.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC--------ccchhHHHHHHHhcccCC---CCcceEEeCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--------AAEALNGVKMELVDAAFP---LLKGVVATTD 74 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~--------~~~~~~~~~~dl~~~~~~---~~~~v~~~~~ 74 (320)
++++||||+|.+|.+++..|++.|. +|++.|++. ..+.++....++...... ...++....+
T Consensus 28 k~vlVTGas~GIG~aia~~la~~G~-------~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 100 (322)
T 3qlj_A 28 RVVIVTGAGGGIGRAHALAFAAEGA-------RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQ 100 (322)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHH
Confidence 5789999999999999999999987 899998751 012333333334322110 1112222112
Q ss_pred hhhhc-------CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhc--------CCCeEEEEEcCc
Q 020875 75 AVEAC-------TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHA--------APNCKVLVVANP 133 (320)
Q Consensus 75 ~~~al-------~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~--------~~~~~viv~snP 133 (320)
..+.+ ...|++|+.||...... .+ ....+..|+.....+.+.+..+- ...+++|++|+.
T Consensus 101 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~ 180 (322)
T 3qlj_A 101 AAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSG 180 (322)
T ss_dssp HHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCH
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCH
Confidence 22222 37899999999754211 12 34467788887666666554331 012678888764
Q ss_pred chhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
... . +.+..-.|+.++.-...+-+.+|..++ +..|+.
T Consensus 181 ~~~-------~--~~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~v 217 (322)
T 3qlj_A 181 AGL-------Q--GSVGQGNYSAAKAGIATLTLVGAAEMG--RYGVTV 217 (322)
T ss_dssp HHH-------H--CBTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred HHc-------c--CCCCCccHHHHHHHHHHHHHHHHHHhc--ccCcEE
Confidence 321 1 222222466666666667777777764 345653
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.09 E-value=2e-05 Score=69.74 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=62.1
Q ss_pred CCCC--CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeE-EEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh
Q 020875 1 MAKE--PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI-LHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~--~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~e-v~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (320)
|+.. +|||+|+| +|.+|+.++..|...|+ + +.++|+++ ++++.....+ .+....+..+
T Consensus 4 m~~~~~~m~i~iiG-~G~mG~~~a~~l~~~g~-------~~v~~~~~~~--~~~~~~~~~~---------g~~~~~~~~~ 64 (266)
T 3d1l_A 4 MKRSIEDTPIVLIG-AGNLATNLAKALYRKGF-------RIVQVYSRTE--ESARELAQKV---------EAEYTTDLAE 64 (266)
T ss_dssp ---CGGGCCEEEEC-CSHHHHHHHHHHHHHTC-------CEEEEECSSH--HHHHHHHHHT---------TCEEESCGGG
T ss_pred hhcCCCCCeEEEEc-CCHHHHHHHHHHHHCCC-------eEEEEEeCCH--HHHHHHHHHc---------CCceeCCHHH
Confidence 4543 58999999 59999999999998886 5 88999863 3333211111 1334456777
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+++++|+||++... ....++++.+....+++..++..++
T Consensus 65 ~~~~~Dvvi~av~~----------------~~~~~v~~~l~~~~~~~~ivv~~s~ 103 (266)
T 3d1l_A 65 VNPYAKLYIVSLKD----------------SAFAELLQGIVEGKREEALMVHTAG 103 (266)
T ss_dssp SCSCCSEEEECCCH----------------HHHHHHHHHHHTTCCTTCEEEECCT
T ss_pred HhcCCCEEEEecCH----------------HHHHHHHHHHHhhcCCCcEEEECCC
Confidence 88999999998520 0124455566555435666776765
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-05 Score=73.21 Aligned_cols=106 Identities=11% Similarity=0.233 Sum_probs=68.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC-------cCCCCCCeEEEEEecCCccc---hhHHHHHHHhcc----cCCCCcceE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGV-------MLGTDQPVILHMLDIPPAAE---ALNGVKMELVDA----AFPLLKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~-------~~~~~~~~ev~l~D~~~~~~---~~~~~~~dl~~~----~~~~~~~v~ 70 (320)
+|||+|+| +|.+|++++..|++.| + +|.++|+++..+ +++.....-... .......+.
T Consensus 21 ~~kI~iIG-aG~mG~alA~~L~~~G~~~~~~~~-------~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~ 92 (375)
T 1yj8_A 21 PLKISILG-SGNWASAISKVVGTNAKNNYLFEN-------EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIV 92 (375)
T ss_dssp CBCEEEEC-CSHHHHHHHHHHHHHHHHCTTBCS-------CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHcCCccCCCCC-------eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeE
Confidence 46999999 6999999999999887 5 799999874200 222211110000 001123567
Q ss_pred EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhh----hcCCCeEEEEEcCcc
Q 020875 71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQ----HAAPNCKVLVVANPA 134 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~----~~~~~~~viv~snP~ 134 (320)
.+++..++++++|+||++.. . ..+.++++.+.. +..++..+|..+|.+
T Consensus 93 ~~~~~~ea~~~aDvVilav~--~--------------~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi 144 (375)
T 1yj8_A 93 AHSDLASVINDADLLIFIVP--C--------------QYLESVLASIKESESIKIASHAKAISLTKGF 144 (375)
T ss_dssp EESSTHHHHTTCSEEEECCC--H--------------HHHHHHHHHHTC---CCCCTTCEEEECCCSC
T ss_pred EECCHHHHHcCCCEEEEcCC--H--------------HHHHHHHHHHhhhhhccCCCCCEEEEeCCcc
Confidence 77777788999999999852 1 235666677766 544566777777643
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-05 Score=80.20 Aligned_cols=105 Identities=13% Similarity=0.196 Sum_probs=68.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc----ccC----------CCCcceE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD----AAF----------PLLKGVV 70 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~----~~~----------~~~~~v~ 70 (320)
++||+|+| +|.+|+.++..|+..|+ +|+++|+++ +.++.....+.+ ... .....++
T Consensus 312 ~~kV~VIG-aG~MG~~iA~~la~aG~-------~V~l~D~~~--~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~ 381 (725)
T 2wtb_A 312 IKKVAIIG-GGLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLK 381 (725)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSSH--HHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEE
T ss_pred CcEEEEEc-CCHhhHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceE
Confidence 46899999 69999999999999997 899999974 333211111110 000 0124577
Q ss_pred EeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 71 ATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 71 ~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
.++++ +++++||+||.+.. . +....+.+...+.++.++++ |++||...+
T Consensus 382 ~~~d~-~~~~~aDlVIeaVp--e------------~~~vk~~v~~~l~~~~~~~~--IlasntStl 430 (725)
T 2wtb_A 382 GSLDY-ESFRDVDMVIEAVI--E------------NISLKQQIFADLEKYCPQHC--ILASNTSTI 430 (725)
T ss_dssp EESSS-GGGTTCSEEEECCC--S------------CHHHHHHHHHHHHHHSCTTC--EEEECCSSS
T ss_pred EeCCH-HHHCCCCEEEEcCc--C------------CHHHHHHHHHHHHhhCCCCc--EEEeCCCCC
Confidence 77776 78999999999852 1 12334556666777775665 346665443
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.6e-05 Score=71.03 Aligned_cols=156 Identities=12% Similarity=0.100 Sum_probs=98.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC-------hhhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVEA 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~~a 78 (320)
+.++||||++-+|.+++..|++.|. .|++.|+++ ++++....++.........+++...+ ..+.
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga-------~V~i~~r~~--~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGA-------RVFITGRRK--DVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999997 899999874 55655555553221111122222112 2233
Q ss_pred cCCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc
Q 020875 79 CTGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN 152 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~ 152 (320)
+-..|++|+.||...... . +.+..+..|+.....+.+....+-...+.+|++++-... .+.|..-
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~---------~~~~~~~ 171 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS---------TGTPAFS 171 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGG---------SCCTTCH
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhc---------cCCCCch
Confidence 456899999998753211 1 245577888888777777766653234667777754321 2333222
Q ss_pred EEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 153 ITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 153 i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|+.++---..|-+.+|..++ +..||.
T Consensus 172 ~Y~asKaav~~ltr~lA~Ela--~~gIrV 198 (273)
T 4fgs_A 172 VYAASKAALRSFARNWILDLK--DRGIRI 198 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--TSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ccCeEE
Confidence 466666666677777888876 567773
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.06 E-value=8.1e-06 Score=71.45 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=90.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhcC-
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEACT- 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al~- 80 (320)
.++++||||+|.+|.+++..|++.|. .|++.+.+. .+.++....++...... ...++....+..+.++
T Consensus 7 ~k~vlITGas~gIG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (255)
T 3icc_A 7 GKVALVTGASRGIGRAIAKRLANDGA-------LVAIHYGNR-KEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSS 78 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-SHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCc-hHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHH
Confidence 45899999999999999999999986 677754332 23343333344322110 0011111111111111
Q ss_pred ------------CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 81 ------------GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 81 ------------~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
..|++|+.||...... .+ ....+..|+.....+.+.+...-.+..++|++|+....
T Consensus 79 ~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~------ 152 (255)
T 3icc_A 79 LDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATR------ 152 (255)
T ss_dssp HHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGT------
T ss_pred HHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhc------
Confidence 2899999999753211 12 23467789888888888887653234678888865421
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
.+.|....|+.++.....+-..+++.+.
T Consensus 153 ---~~~~~~~~Y~asKaa~~~~~~~la~e~~ 180 (255)
T 3icc_A 153 ---ISLPDFIAYSMTKGAINTMTFTLAKQLG 180 (255)
T ss_dssp ---SCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ---cCCCCcchhHHhHHHHHHHHHHHHHHHH
Confidence 2333333466666666677777777764
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.6e-06 Score=73.55 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=85.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChhhh--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEA-- 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~a-- 78 (320)
+.++++||||+|++|.+++..|++.|. +|++.++++ ++++....++..... ....++....+..++
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (260)
T 2qq5_A 4 NGQVCVVTGASRGIGRGIALQLCKAGA-------TVYITGRHL--DTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFE 74 (260)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHH
Confidence 346899999999999999999999986 899999863 333333333322110 001122111111111
Q ss_pred ------cCCCcEEEEeCC--CC------CCC--C---CCHHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 79 ------CTGVNIAVMVGG--FP------RKE--G---MERKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 79 ------l~~aDvVi~~ag--~~------~~~--~---~~r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
+...|++|+.|| .. ..+ . +.....+..|+... +.+.+.+.+.. .+++|++|+...
T Consensus 75 ~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~ 152 (260)
T 2qq5_A 75 QVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAG--QGLIVVISSPGS 152 (260)
T ss_dssp HHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGT--CCEEEEECCGGG
T ss_pred HHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcC--CcEEEEEcChhh
Confidence 345799999994 21 111 1 12334556665554 44445554443 367888886542
Q ss_pred hhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 136 TNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 136 ~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
. .. ++...|+.++.-...+-+.+++.+. +..|+
T Consensus 153 ~---------~~-~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~ 185 (260)
T 2qq5_A 153 L---------QY-MFNVPYGVGKAACDKLAADCAHELR--RHGVS 185 (260)
T ss_dssp T---------SC-CSSHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred c---------CC-CCCCchHHHHHHHHHHHHHHHHHhc--cCCeE
Confidence 1 11 1122456666655666666777654 33455
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.4e-05 Score=72.16 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=65.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHh--------cc----cCCCCcceEEe
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV--------DA----AFPLLKGVVAT 72 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~--------~~----~~~~~~~v~~~ 72 (320)
.+||+|+| +|.+|+.++..|+..|+ +|+++|+++ +.++.....+. .. .........++
T Consensus 37 ~~kV~VIG-aG~MG~~iA~~la~~G~-------~V~l~D~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 106 (463)
T 1zcj_A 37 VSSVGVLG-LGTMGRGIAISFARVGI-------SVVAVESDP--KQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS 106 (463)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 46999999 59999999999999987 899999874 33321111110 00 00001123445
Q ss_pred CChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 73 TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 73 ~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
+++ +++++||+||.+.. . +....+++.+.+..+.++++++ +||.++.
T Consensus 107 ~~~-~~~~~aDlVIeaVp--e------------~~~~k~~v~~~l~~~~~~~~ii--~snTs~~ 153 (463)
T 1zcj_A 107 SST-KELSTVDLVVEAVF--E------------DMNLKKKVFAELSALCKPGAFL--CTNTSAL 153 (463)
T ss_dssp SCG-GGGTTCSEEEECCC--S------------CHHHHHHHHHHHHHHSCTTCEE--EECCSSS
T ss_pred CCH-HHHCCCCEEEEcCC--C------------CHHHHHHHHHHHHhhCCCCeEE--EeCCCCc
Confidence 565 78999999999862 1 2234455666677766566644 3465544
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.2e-05 Score=70.94 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
.++|||+|+| +|.+|..++..|+..|+ +|.++|+++ ++++. +.... -....++..++++++
T Consensus 5 ~~~~~I~iIG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~g-----~~~~~~~~~e~~~~a 65 (303)
T 3g0o_A 5 GTDFHVGIVG-LGSMGMGAARSCLRAGL-------STWGADLNP--QACAN----LLAEG-----ACGAAASAREFAGVV 65 (303)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHHTT-----CSEEESSSTTTTTTC
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEECCH--HHHHH----HHHcC-----CccccCCHHHHHhcC
Confidence 3468999999 69999999999999987 899999874 33322 22111 111245677888999
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+||++.
T Consensus 66 Dvvi~~v 72 (303)
T 3g0o_A 66 DALVILV 72 (303)
T ss_dssp SEEEECC
T ss_pred CEEEEEC
Confidence 9999985
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-05 Score=70.54 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++|||+||| +|.+|++++..|...|+- ..+|.++|+++ ++++. +.+. ..+....+..++++++|
T Consensus 2 ~~~~I~iIG-~G~mG~aia~~l~~~g~~----~~~V~v~dr~~--~~~~~----l~~~-----~gi~~~~~~~~~~~~aD 65 (280)
T 3tri_A 2 NTSNITFIG-GGNMARNIVVGLIANGYD----PNRICVTNRSL--DKLDF----FKEK-----CGVHTTQDNRQGALNAD 65 (280)
T ss_dssp CCSCEEEES-CSHHHHHHHHHHHHTTCC----GGGEEEECSSS--HHHHH----HHHT-----TCCEEESCHHHHHSSCS
T ss_pred CCCEEEEEc-ccHHHHHHHHHHHHCCCC----CCeEEEEeCCH--HHHHH----HHHH-----cCCEEeCChHHHHhcCC
Confidence 357999999 699999999999988751 12699999874 33332 2211 02445567788999999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 66 vVilav 71 (280)
T 3tri_A 66 VVVLAV 71 (280)
T ss_dssp EEEECS
T ss_pred eEEEEe
Confidence 999986
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.4e-05 Score=77.97 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=92.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhH-H--HH-HHHhc--------ccCCCCcceEEeC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-G--VK-MELVD--------AAFPLLKGVVATT 73 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~-~--~~-~dl~~--------~~~~~~~~v~~~~ 73 (320)
.||+|+| +|.+|+.++..++..|+ +|+|+|+++ +.+. + .. ..+.. ........++.++
T Consensus 317 ~~v~ViG-aG~MG~gIA~~~a~aG~-------~V~l~D~~~--~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (742)
T 3zwc_A 317 SSVGVLG-LGTMGRGIAISFARVGI-------SVVAVESDP--KQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS 386 (742)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSH--HHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEES
T ss_pred cEEEEEc-ccHHHHHHHHHHHhCCC-------chhcccchH--hhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccC
Confidence 6999999 59999999999999998 899999974 2221 1 00 01100 0011234566666
Q ss_pred ChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC-----
Q 020875 74 DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI----- 148 (320)
Q Consensus 74 ~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~----- 148 (320)
+ .+++++||+||-+. -+|+++-+++.+.++++++|++ |++||.+.+...-+.+. ...
T Consensus 387 ~-~~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~a--IlASNTSsl~i~~ia~~-~~~p~r~i 448 (742)
T 3zwc_A 387 S-TKELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGA--FLCTNTSALNVDDIASS-TDRPQLVI 448 (742)
T ss_dssp C-GGGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC--EEEECCSSSCHHHHHTT-SSCGGGEE
T ss_pred c-HHHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCc--eEEecCCcCChHHHHhh-cCCccccc
Confidence 5 57799999999874 1345677899999999997776 67888776533333332 222
Q ss_pred ------CCC--c---EEE--eehhhHHHHHHHHHHHcCCCC
Q 020875 149 ------PAK--N---ITC--LTRLDHNRALGQISEKLNVQV 176 (320)
Q Consensus 149 ------~~~--~---i~~--~t~ld~~r~~~~~a~~l~v~~ 176 (320)
|++ + |+. .|.-++......+++.+|..|
T Consensus 449 g~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~p 489 (742)
T 3zwc_A 449 GTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG 489 (742)
T ss_dssp EEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred cccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence 222 1 222 256666666667788888654
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-05 Score=70.47 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++|||+|+| +|.+|..++..|+..|+ +|.++|+++ ++++. +.+. .+...++..++++++|
T Consensus 20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~~----l~~~------g~~~~~~~~~~~~~aD 79 (310)
T 3doj_A 20 HMMEVGFLG-LGIMGKAMSMNLLKNGF-------KVTVWNRTL--SKCDE----LVEH------GASVCESPAEVIKKCK 79 (310)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSG--GGGHH----HHHT------TCEECSSHHHHHHHCS
T ss_pred cCCEEEEEC-ccHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHH----HHHC------CCeEcCCHHHHHHhCC
Confidence 468999999 69999999999999987 899999874 33332 2111 2344567888899999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 80 vvi~~v 85 (310)
T 3doj_A 80 YTIAML 85 (310)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 999975
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-05 Score=69.58 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=50.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
+|||+|+| +|.+|.+++..|...|+ +|.++|+++ ++++. +.+. .+...++..++++++|+
T Consensus 1 s~~i~iIG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~------g~~~~~~~~~~~~~aDv 60 (287)
T 3pef_A 1 SQKFGFIG-LGIMGSAMAKNLVKAGC-------SVTIWNRSP--EKAEE----LAAL------GAERAATPCEVVESCPV 60 (287)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSG--GGGHH----HHHT------TCEECSSHHHHHHHCSE
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHHH----HHHC------CCeecCCHHHHHhcCCE
Confidence 37999999 69999999999999987 899999974 33332 2211 23455678888999999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 61 vi~~v 65 (287)
T 3pef_A 61 TFAML 65 (287)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 99975
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.7e-05 Score=69.88 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++|||+|+| +|.+|+.++..|...|... ..+|.++|++++ + . .+....+..++++++|
T Consensus 3 ~~m~i~iiG-~G~mG~~~a~~l~~~g~~~---~~~v~~~~~~~~--~---------~-------g~~~~~~~~~~~~~~D 60 (262)
T 2rcy_A 3 ENIKLGFMG-LGQMGSALAHGIANANIIK---KENLFYYGPSKK--N---------T-------TLNYMSSNEELARHCD 60 (262)
T ss_dssp SSSCEEEEC-CSHHHHHHHHHHHHHTSSC---GGGEEEECSSCC--S---------S-------SSEECSCHHHHHHHCS
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCCCC---CCeEEEEeCCcc--c---------C-------ceEEeCCHHHHHhcCC
Confidence 357999999 5999999999999887310 016899998742 2 0 1233446677888999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
+||++.. + . .+.++++.+..+. ++..++..+|.++.
T Consensus 61 ~vi~~v~-~----~-----------~~~~v~~~l~~~l-~~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 61 IIVCAVK-P----D-----------IAGSVLNNIKPYL-SSKLLISICGGLNI 96 (262)
T ss_dssp EEEECSC-T----T-----------THHHHHHHSGGGC-TTCEEEECCSSCCH
T ss_pred EEEEEeC-H----H-----------HHHHHHHHHHHhc-CCCEEEEECCCCCH
Confidence 9999863 1 1 1244555566655 45667777777654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.3e-05 Score=68.89 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=48.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
++||+|+| .|.+|..++..|+..|+ +|.++|+++ ++++. +.+. .+...++..++++ +|+
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~------g~~~~~~~~~~~~-aDv 73 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPG-------GVTVYDIRI--EAMTP----LAEA------GATLADSVADVAA-ADL 73 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTT-------CEEEECSST--TTSHH----HHHT------TCEECSSHHHHTT-SSE
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHH----HHHC------CCEEcCCHHHHHh-CCE
Confidence 36899999 69999999999999887 799999975 33332 1111 2345567888888 999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 74 vi~~v 78 (296)
T 3qha_A 74 IHITV 78 (296)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 99985
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=97.98 E-value=4.1e-06 Score=76.77 Aligned_cols=155 Identities=16% Similarity=0.134 Sum_probs=85.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc-cchhHHHHHHHhc---ccCC---CCcceEEeCChhhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA-AEALNGVKMELVD---AAFP---LLKGVVATTDAVEA 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~-~~~~~~~~~dl~~---~~~~---~~~~v~~~~~~~~a 78 (320)
++|+||||+|++|.+++..|++.|. ++++++++.. .+.+......+.. .... ...++....+..++
T Consensus 3 k~vlVTGas~GIG~ala~~L~~~G~-------~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 75 (327)
T 1jtv_A 3 TVVLITGCSSGIGLHLAVRLASDPS-------QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAA 75 (327)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTT-------CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-------ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHH
Confidence 5789999999999999999999886 4566655321 1112111111110 0000 01122222223333
Q ss_pred cC-----CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 79 CT-----GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 79 l~-----~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
++ ..|++|+.||+..... .+ ....+..|+.....+.+.+ ++.. ..++|++|+....
T Consensus 76 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~--~g~IV~isS~~~~------- 146 (327)
T 1jtv_A 76 RERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGL------- 146 (327)
T ss_dssp HHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGT-------
T ss_pred HHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEECCcccc-------
Confidence 33 4899999998753211 12 3356778887777776664 4432 4677777754321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+..-.|+.++.-...+-..+++.+. +..|+
T Consensus 147 --~~~~~~~~Y~aSK~a~~~~~~~la~el~--~~gI~ 179 (327)
T 1jtv_A 147 --MGLPFNDVYCASKFALEGLCESLAVLLL--PFGVH 179 (327)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred --cCCCCChHHHHHHHHHHHHHHHHHHHhh--hcCcE
Confidence 1233333566666666667677777654 33454
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.9e-05 Score=68.54 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=49.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
..++|||+||| +|.+|..++..|...|+. +|.++|++++.++.+ .+... .+...++..+++++
T Consensus 21 ~~~~~~I~iIG-~G~mG~~~A~~L~~~G~~------~V~~~dr~~~~~~~~----~~~~~------g~~~~~~~~e~~~~ 83 (312)
T 3qsg_A 21 QSNAMKLGFIG-FGEAASAIASGLRQAGAI------DMAAYDAASAESWRP----RAEEL------GVSCKASVAEVAGE 83 (312)
T ss_dssp ----CEEEEEC-CSHHHHHHHHHHHHHSCC------EEEEECSSCHHHHHH----HHHHT------TCEECSCHHHHHHH
T ss_pred cCCCCEEEEEC-ccHHHHHHHHHHHHCCCC------eEEEEcCCCCHHHHH----HHHHC------CCEEeCCHHHHHhc
Confidence 44568999999 699999999999998862 799999852112222 12111 23445577888999
Q ss_pred CcEEEEeCC
Q 020875 82 VNIAVMVGG 90 (320)
Q Consensus 82 aDvVi~~ag 90 (320)
+|+||++..
T Consensus 84 aDvVi~~vp 92 (312)
T 3qsg_A 84 CDVIFSLVT 92 (312)
T ss_dssp CSEEEECSC
T ss_pred CCEEEEecC
Confidence 999999863
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.9e-05 Score=70.82 Aligned_cols=107 Identities=15% Similarity=0.242 Sum_probs=64.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-C-CcceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-L-LKGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~-~~~v~~~~~~~~al~~aD 83 (320)
|||+|+| +|.+|+.++..|.+.|+ +|.++++++ .+.++..-..+...... . ...+..+++..++.+++|
T Consensus 3 mkI~IiG-aGaiG~~~a~~L~~~g~-------~V~~~~r~~-~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIG-TGAIGSFYGALLAKTGH-------CVSVVSRSD-YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHTTC-------EEEEECSTT-HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCh-HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 7999999 69999999999999886 899999863 12111100001110000 0 012334455555555999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~ 137 (320)
+||++.-.. .. .++++.++.+-.++..+|.+.|-++..
T Consensus 74 lVilavK~~----~~------------~~~l~~l~~~l~~~t~Iv~~~nGi~~~ 111 (320)
T 3i83_A 74 CTLLCIKVV----EG------------ADRVGLLRDAVAPDTGIVLISNGIDIE 111 (320)
T ss_dssp EEEECCCCC----TT------------CCHHHHHTTSCCTTCEEEEECSSSSCS
T ss_pred EEEEecCCC----Ch------------HHHHHHHHhhcCCCCEEEEeCCCCChH
Confidence 999985322 11 223455555544567788888977644
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.1e-05 Score=68.04 Aligned_cols=108 Identities=17% Similarity=0.201 Sum_probs=62.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhc-----C-cCCCCCCeEEEEEecCCccchhHHHHHHHh-cccCC----CCcce
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARG-----V-MLGTDQPVILHMLDIPPAAEALNGVKMELV-DAAFP----LLKGV 69 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~-----~-~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~-~~~~~----~~~~v 69 (320)
|+.++|||+|+| +|.+|+.++..|.+. | + +|.++|+ + ++++....+.. ..... ...++
T Consensus 4 m~~~~m~I~iiG-~G~mG~~~a~~L~~~~~~~~g~~-------~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~ 72 (317)
T 2qyt_A 4 MNQQPIKIAVFG-LGGVGGYYGAMLALRAAATDGLL-------EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPT 72 (317)
T ss_dssp ---CCEEEEEEC-CSHHHHHHHHHHHHHHHHTTSSE-------EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCS
T ss_pred CCCCCCEEEEEC-cCHHHHHHHHHHHhCccccCCCC-------CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecc
Confidence 777789999999 699999999999988 7 6 8999997 3 33322111000 00000 01123
Q ss_pred EEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 70 ~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
..+++ .++++++|+||++.... . +.++++.+..+-.++..+|.++|..+.
T Consensus 73 ~~~~~-~~~~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~ 122 (317)
T 2qyt_A 73 CVTDN-PAEVGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADI 122 (317)
T ss_dssp EEESC-HHHHCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred eEecC-ccccCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence 33344 35678999999986322 1 133445555543245566667887654
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.7e-05 Score=71.09 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++|||+||| +|.+|+.++..|...|... ..+|.++|++++.++++. +... .+....+..++++++|
T Consensus 21 ~~mkI~iIG-~G~mG~ala~~L~~~G~~~---~~~V~v~~r~~~~~~~~~----l~~~------G~~~~~~~~e~~~~aD 86 (322)
T 2izz_A 21 QSMSVGFIG-AGQLAFALAKGFTAAGVLA---AHKIMASSPDMDLATVSA----LRKM------GVKLTPHNKETVQHSD 86 (322)
T ss_dssp -CCCEEEES-CSHHHHHHHHHHHHTTSSC---GGGEEEECSCTTSHHHHH----HHHH------TCEEESCHHHHHHHCS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCC---cceEEEECCCccHHHHHH----HHHc------CCEEeCChHHHhccCC
Confidence 457999999 6999999999999888311 017899998742112322 2111 2344456778889999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
+||++.. + . .+.++++.+.....++..+|.++|.+.
T Consensus 87 vVilav~-~----~-----------~~~~vl~~l~~~l~~~~ivvs~s~gi~ 122 (322)
T 2izz_A 87 VLFLAVK-P----H-----------IIPFILDEIGADIEDRHIVVSCAAGVT 122 (322)
T ss_dssp EEEECSC-G----G-----------GHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred EEEEEeC-H----H-----------HHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 9999863 1 1 234455556555435666777777654
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-05 Score=69.69 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHH--------HHHHhcccCCCCcceEEeCCh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGV--------KMELVDAAFPLLKGVVATTDA 75 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~--------~~dl~~~~~~~~~~v~~~~~~ 75 (320)
..+||+|+| +|.+|++++..|+..|+ +|.++|++++....+.. ..++... . .... ..+.
T Consensus 18 ~~~kIgiIG-~G~mG~alA~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~-~~~~ 84 (245)
T 3dtt_A 18 QGMKIAVLG-TGTVGRTMAGALADLGH-------EVTIGTRDPKATLARAEPDAMGAPPFSQWLPE---H-PHVH-LAAF 84 (245)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCHHHHHTCC-------CCHHHHGGG---S-TTCE-EEEH
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCChhhhhhhhhhhhhcchhhhHHHhh---c-Ccee-ccCH
Confidence 358999999 69999999999999887 89999987421001100 1112111 0 1122 2356
Q ss_pred hhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 76 VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
.+++++||+||++.... . - .+.+.++. .... ++..+|.++||.+
T Consensus 85 ~e~~~~aDvVilavp~~----~-~-------~~~~~~i~---~~~l-~g~ivi~~s~~~~ 128 (245)
T 3dtt_A 85 ADVAAGAELVVNATEGA----S-S-------IAALTAAG---AENL-AGKILVDIANPLD 128 (245)
T ss_dssp HHHHHHCSEEEECSCGG----G-H-------HHHHHHHC---HHHH-TTSEEEECCCCEE
T ss_pred HHHHhcCCEEEEccCcH----H-H-------HHHHHHhh---hhhc-CCCEEEECCCCCC
Confidence 78889999999985311 1 0 11222331 2222 4567888999873
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.95 E-value=8.4e-05 Score=67.74 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++|||+|+| +|.+|..++..|+..|+ +|.++|+++ ++++ .+.+. .+...++..++++++|
T Consensus 30 ~~~~I~iIG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~----~l~~~------g~~~~~~~~e~~~~aD 89 (320)
T 4dll_A 30 YARKITFLG-TGSMGLPMARRLCEAGY-------ALQVWNRTP--ARAA----SLAAL------GATIHEQARAAARDAD 89 (320)
T ss_dssp CCSEEEEEC-CTTTHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHTT------TCEEESSHHHHHTTCS
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCCC-------eEEEEcCCH--HHHH----HHHHC------CCEeeCCHHHHHhcCC
Confidence 357999999 69999999999999887 899999874 3322 22221 2455568888999999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 90 vVi~~v 95 (320)
T 4dll_A 90 IVVSML 95 (320)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999985
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.2e-05 Score=69.24 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=49.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|+||+|+| +|.+|.+++..|+..|+ +|.++|+++ ++++.. .+. .+...++..++++++|+
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~-------~V~~~dr~~--~~~~~~----~~~------g~~~~~~~~~~~~~adv 60 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGF-------DVTVWNRNP--AKCAPL----VAL------GARQASSPAEVCAACDI 60 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTC-------CEEEECSSG--GGGHHH----HHH------TCEECSCHHHHHHHCSE
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHHHH----HHC------CCeecCCHHHHHHcCCE
Confidence 36899999 69999999999999887 799999874 333321 111 23445578888899999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 61 vi~~v 65 (287)
T 3pdu_A 61 TIAML 65 (287)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 99985
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.1e-05 Score=68.10 Aligned_cols=150 Identities=15% Similarity=0.077 Sum_probs=89.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC-------hhhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVEA 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~~a 78 (320)
++|.||||++.+|.+++..|++.|. .|++.|+++ +++.....+..+.. ....+++...+ ..+.
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga-------~V~~~~~~~--~~~~~~~~~~~~~~-~~~~Dv~~~~~v~~~v~~~~~~ 72 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGD-------KVCFIDIDE--KRSADFAKERPNLF-YFHGDVADPLTLKKFVEYAMEK 72 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHTTCTTEE-EEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhcCCEE-EEEecCCCHHHHHHHHHHHHHH
Confidence 4799999999999999999999997 899999874 33322211111100 01112211111 2334
Q ss_pred cCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 79 CTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~----~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
+...|++|+.||...... .+ .+..+..|+.....+. +.+.+. .+.+|++++-... .+.
T Consensus 73 ~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~---~G~IInisS~~~~---------~~~ 140 (247)
T 3ged_A 73 LQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN---KGRIINIASTRAF---------QSE 140 (247)
T ss_dssp HSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT---TCEEEEECCGGGT---------SCC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCcEEEEeecccc---------cCC
Confidence 567899999998754321 22 3446777876655444 444432 3678888764321 223
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
|..-.|+.++---..|-+.+|..++ | +|+
T Consensus 141 ~~~~~Y~asKaal~~ltk~lA~ela--~-~Ir 169 (247)
T 3ged_A 141 PDSEAYASAKGGIVALTHALAMSLG--P-DVL 169 (247)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHT--T-TSE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHC--C-CCE
Confidence 3222466666666677788888887 4 576
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=2.5e-05 Score=72.45 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=50.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc----CCCCcceEEeCChhhhcCCC
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA----FPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~----~~~~~~v~~~~~~~~al~~a 82 (320)
||+|+| +|.+|.+++..|...|+ +|.++|+++ ++++.....-.... ......+..+++..++++++
T Consensus 17 kI~iIG-~G~mG~~la~~L~~~G~-------~V~~~~r~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 86 (366)
T 1evy_A 17 KAVVFG-SGAFGTALAMVLSKKCR-------EVCVWHMNE--EEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGA 86 (366)
T ss_dssp EEEEEC-CSHHHHHHHHHHTTTEE-------EEEEECSCH--HHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTC
T ss_pred eEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHcCcccccccccccccceeeeCCHHHHHcCC
Confidence 999999 69999999999998886 899999863 33332211110000 01122466667777889999
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+||++.
T Consensus 87 DvVilav 93 (366)
T 1evy_A 87 EIILFVI 93 (366)
T ss_dssp SSEEECC
T ss_pred CEEEECC
Confidence 9999985
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.9e-05 Score=68.27 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=49.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC-cCCCCCCeEEEEEecCCc-cchhHHHHHHHhcccCCCCcceEEeC-ChhhhcCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPA-AEALNGVKMELVDAAFPLLKGVVATT-DAVEACTG 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ev~l~D~~~~-~~~~~~~~~dl~~~~~~~~~~v~~~~-~~~~al~~ 81 (320)
+|||+|+| +|.+|.+++..|+..| + +|.++|++++ .++.+.....+.... + .+ +..+++++
T Consensus 24 ~m~IgvIG-~G~mG~~lA~~L~~~G~~-------~V~~~dr~~~~~~~~~~~~~~~~~~g------~--~~~s~~e~~~~ 87 (317)
T 4ezb_A 24 MTTIAFIG-FGEAAQSIAGGLGGRNAA-------RLAAYDLRFNDPAASGALRARAAELG------V--EPLDDVAGIAC 87 (317)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCS-------EEEEECGGGGCTTTHHHHHHHHHHTT------C--EEESSGGGGGG
T ss_pred CCeEEEEC-ccHHHHHHHHHHHHcCCC-------eEEEEeCCCccccchHHHHHHHHHCC------C--CCCCHHHHHhc
Confidence 57999999 6999999999999998 6 8999998741 112222222222211 1 33 56788999
Q ss_pred CcEEEEeCC
Q 020875 82 VNIAVMVGG 90 (320)
Q Consensus 82 aDvVi~~ag 90 (320)
||+||++..
T Consensus 88 aDvVi~avp 96 (317)
T 4ezb_A 88 ADVVLSLVV 96 (317)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEecC
Confidence 999999863
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.4e-05 Score=67.73 Aligned_cols=70 Identities=23% Similarity=0.323 Sum_probs=49.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.+||+|+| +|.+|+.++..|+ .|+ +|+++|+++ +.++.....+.+ .....++..+++. ++++||+
T Consensus 12 ~~~V~vIG-~G~MG~~iA~~la-aG~-------~V~v~d~~~--~~~~~~~~~l~~---~~~~~i~~~~~~~-~~~~aDl 76 (293)
T 1zej_A 12 HMKVFVIG-AGLMGRGIAIAIA-SKH-------EVVLQDVSE--KALEAAREQIPE---ELLSKIEFTTTLE-KVKDCDI 76 (293)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHH-TTS-------EEEEECSCH--HHHHHHHHHSCG---GGGGGEEEESSCT-TGGGCSE
T ss_pred CCeEEEEe-eCHHHHHHHHHHH-cCC-------EEEEEECCH--HHHHHHHHHHHH---HHhCCeEEeCCHH-HHcCCCE
Confidence 37999999 6999999999999 997 899999974 333322111111 1123566666765 4899999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||.+.
T Consensus 77 Vieav 81 (293)
T 1zej_A 77 VMEAV 81 (293)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99975
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.89 E-value=7.1e-05 Score=68.85 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHh----cccCCCCcce-EEeCChhhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV----DAAFPLLKGV-VATTDAVEA 78 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~----~~~~~~~~~v-~~~~~~~~a 78 (320)
++|||+|+| +|.+|+.++..|...|+ +|.++|+++ ++++....... .........+ ...++..++
T Consensus 3 ~~mki~iiG-~G~~G~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (359)
T 1bg6_A 3 ESKTYAVLG-LGNGGHAFAAYLALKGQ-------SVLAWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA 72 (359)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH
T ss_pred CcCeEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHHHHhcCCeEEeccccccccccceecCCHHHH
Confidence 358999999 59999999999998886 899999863 33332211100 0000000112 345577777
Q ss_pred cCCCcEEEEeCC
Q 020875 79 CTGVNIAVMVGG 90 (320)
Q Consensus 79 l~~aDvVi~~ag 90 (320)
++++|+||++..
T Consensus 73 ~~~~D~vi~~v~ 84 (359)
T 1bg6_A 73 VKDADVILIVVP 84 (359)
T ss_dssp HTTCSEEEECSC
T ss_pred HhcCCEEEEeCC
Confidence 899999999863
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.3e-05 Score=75.70 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=75.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-chhHHHHHHHhcccCC---CCcceEEeCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDAAFP---LLKGVVATTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al~ 80 (320)
..+++||||+|++|.+++..|+++|.. .|++++++... +.+.....++...... ...++....+..+.++
T Consensus 226 ~~~vLITGgtGgIG~~la~~La~~G~~------~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~ 299 (486)
T 2fr1_A 226 TGTVLVTGGTGGVGGQIARWLARRGAP------HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLG 299 (486)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCS------EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCC------EEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHH
Confidence 468999999999999999999998862 58999986421 1222222333322110 0112222223344444
Q ss_pred CC------cEEEEeCCCCCCC---CCCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 81 GV------NIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 81 ~a------DvVi~~ag~~~~~---~~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
.+ |+|||+||+.... ..+. ...+..|+.....+.+.+.+.. ...+|++|+
T Consensus 300 ~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~--~~~~V~~SS 361 (486)
T 2fr1_A 300 GIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD--LTAFVLFSS 361 (486)
T ss_dssp TSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC--CSEEEEEEE
T ss_pred HHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCC--CCEEEEEcC
Confidence 44 9999999976432 1222 3456789999999999888753 346777775
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00021 Score=65.03 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=48.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh-hcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE-ACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~-al~~aD 83 (320)
.+||+|+| .|.+|..++..|...|+. .+|.++|+++ ++++. ..+. .. .....++..+ ++++||
T Consensus 33 ~~kI~IIG-~G~mG~slA~~l~~~G~~-----~~V~~~dr~~--~~~~~-a~~~--G~-----~~~~~~~~~~~~~~~aD 96 (314)
T 3ggo_A 33 MQNVLIVG-VGFMGGSFAKSLRRSGFK-----GKIYGYDINP--ESISK-AVDL--GI-----IDEGTTSIAKVEDFSPD 96 (314)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHTTCC-----SEEEEECSCH--HHHHH-HHHT--TS-----CSEEESCTTGGGGGCCS
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhCCCC-----CEEEEEECCH--HHHHH-HHHC--CC-----cchhcCCHHHHhhccCC
Confidence 47999999 699999999999998863 2799999874 33221 1111 00 0123346667 799999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 97 vVilav 102 (314)
T 3ggo_A 97 FVMLSS 102 (314)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 999985
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.2e-05 Score=64.33 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
.+|||+|+| +|.+|+.++..|...|+ +|.++|+++ + +++++|
T Consensus 18 ~~~~I~iiG-~G~mG~~la~~l~~~g~-------~V~~~~~~~--~----------------------------~~~~aD 59 (209)
T 2raf_A 18 QGMEITIFG-KGNMGQAIGHNFEIAGH-------EVTYYGSKD--Q----------------------------ATTLGE 59 (209)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECTTC--C----------------------------CSSCCS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEcCCH--H----------------------------HhccCC
Confidence 358999999 69999999999999886 899999863 1 467899
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
+||++.. + ..++++++.+..+. ++..++..+|+.+
T Consensus 60 ~vi~av~-~---------------~~~~~v~~~l~~~~-~~~~vi~~~~g~~ 94 (209)
T 2raf_A 60 IVIMAVP-Y---------------PALAALAKQYATQL-KGKIVVDITNPLN 94 (209)
T ss_dssp EEEECSC-H---------------HHHHHHHHHTHHHH-TTSEEEECCCCBC
T ss_pred EEEEcCC-c---------------HHHHHHHHHHHHhc-CCCEEEEECCCCC
Confidence 9999853 1 11234444444443 2567788888664
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.6e-05 Score=67.95 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=48.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|+ ++|||+|+| +|.+|..++..|...|+ +|.++|+++ ++++ .+.+. .+....+..++++
T Consensus 1 M~-~~~~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~~~~--~~~~----~~~~~------g~~~~~~~~~~~~ 59 (301)
T 3cky_A 1 ME-KSIKIGFIG-LGAMGKPMAINLLKEGV-------TVYAFDLME--ANVA----AVVAQ------GAQACENNQKVAA 59 (301)
T ss_dssp ----CCEEEEEC-CCTTHHHHHHHHHHTTC-------EEEEECSSH--HHHH----HHHTT------TCEECSSHHHHHH
T ss_pred CC-CCCEEEEEC-ccHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHH----HHHHC------CCeecCCHHHHHh
Confidence 66 468999999 69999999999998886 899999863 3322 12221 2334456778888
Q ss_pred CCcEEEEeC
Q 020875 81 GVNIAVMVG 89 (320)
Q Consensus 81 ~aDvVi~~a 89 (320)
++|+||++.
T Consensus 60 ~~D~vi~~v 68 (301)
T 3cky_A 60 ASDIIFTSL 68 (301)
T ss_dssp HCSEEEECC
T ss_pred CCCEEEEEC
Confidence 999999985
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.5e-05 Score=75.13 Aligned_cols=121 Identities=16% Similarity=0.107 Sum_probs=67.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-------ccchhHHHHHHHhcccCCCCcceEEeCChhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-------AAEALNGVKMELVDAAFPLLKGVVATTDAVE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-------~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (320)
.+.++||||+|.+|.+++..|+++|. .|++.|+.. +.+.++....++.........++....+..+
T Consensus 19 gk~~lVTGas~GIG~aiA~~La~~Ga-------~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~ 91 (613)
T 3oml_A 19 GRVAVVTGAGAGLGREYALLFAERGA-------KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAK 91 (613)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHH
Confidence 46889999999999999999999986 899988721 1233333333443221111112211122222
Q ss_pred h-------cCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHH----hhhcCCCeEEEEEcCcc
Q 020875 78 A-------CTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASAL----EQHAAPNCKVLVVANPA 134 (320)
Q Consensus 78 a-------l~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i----~~~~~~~~~viv~snP~ 134 (320)
. +...|++|+.||+.... ..+ ....+..|+.....+.+.+ ++. ..+++|++|+..
T Consensus 92 ~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~--~~g~IV~isS~a 163 (613)
T 3oml_A 92 VIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQ--NYGRIIMTSSNS 163 (613)
T ss_dssp HHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCEEEEEECCHH
T ss_pred HHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECCHH
Confidence 2 23679999999985422 122 3346778887766666555 443 247888887643
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00017 Score=64.49 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++|||+|+| +|.+|+.++..|...+. + .+|.++|+++ ++++. +..... .....++..++++++|
T Consensus 5 ~~~~I~iIG-~G~mG~~~a~~l~~~g~-~----~~V~~~d~~~--~~~~~----~~~~g~----~~~~~~~~~~~~~~aD 68 (290)
T 3b1f_A 5 EEKTIYIAG-LGLIGASLALGIKRDHP-H----YKIVGYNRSD--RSRDI----ALERGI----VDEATADFKVFAALAD 68 (290)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHCT-T----SEEEEECSSH--HHHHH----HHHTTS----CSEEESCTTTTGGGCS
T ss_pred ccceEEEEe-eCHHHHHHHHHHHhCCC-C----cEEEEEcCCH--HHHHH----HHHcCC----cccccCCHHHhhcCCC
Confidence 357999999 69999999999988742 1 2899999863 33221 111110 0023446667789999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhh-cCCCeEEEEEcCc
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH-AAPNCKVLVVANP 133 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~-~~~~~~viv~snP 133 (320)
+||++... ....++++.+..+ ..++.+++.++|.
T Consensus 69 vVilavp~----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~ 103 (290)
T 3b1f_A 69 VIILAVPI----------------KKTIDFIKILADLDLKEDVIITDAGST 103 (290)
T ss_dssp EEEECSCH----------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred EEEEcCCH----------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence 99998531 1124555566555 3356666655653
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.7e-05 Score=69.04 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc---------cchhHHHHHHHhccc-------C
Q 020875 2 AKEPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPA---------AEALNGVKMELVDAA-------F 63 (320)
Q Consensus 2 ~~~~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~---------~~~~~~~~~dl~~~~-------~ 63 (320)
+.+.++++||||+ |.||.+++..|++.|. +|++.|+++. .++++.. .++.... .
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 76 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGA-------EILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVY 76 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTC-------EEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEE
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCC-------eEEEeeccccchhhhhhhhhhHhhhh-hhhcccccccccccc
Confidence 3345689999998 9999999999999987 7888875310 0111110 1111000 0
Q ss_pred CC------CcceEE------------eCChhhh-------cCCCcEEEEeCCCCC---CC--CCC---HHHHHHhhHHHH
Q 020875 64 PL------LKGVVA------------TTDAVEA-------CTGVNIAVMVGGFPR---KE--GME---RKDVMSKNVSIY 110 (320)
Q Consensus 64 ~~------~~~v~~------------~~~~~~a-------l~~aDvVi~~ag~~~---~~--~~~---r~~~~~~n~~~~ 110 (320)
+. ..++.. ..+..+. +...|++|+.||+.. .+ ..+ ....+..|+...
T Consensus 77 ~~~~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~ 156 (297)
T 1d7o_A 77 PLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSF 156 (297)
T ss_dssp EECTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHH
T ss_pred ccceeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHH
Confidence 00 000110 1122222 336899999998632 11 112 345678899988
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCC-cEEEeehhhHHHHHHHHHHHc
Q 020875 111 KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK-NITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 111 ~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~-~i~~~t~ld~~r~~~~~a~~l 172 (320)
..+.+.+..+-...+++|++|+.... .+.|.. -.|+.++.-...+-+.+|+.+
T Consensus 157 ~~l~~~~~~~m~~~g~iv~isS~~~~---------~~~~~~~~~Y~asKaa~~~~~~~la~e~ 210 (297)
T 1d7o_A 157 VSLLSHFLPIMNPGGASISLTYIASE---------RIIPGYGGGMSSAKAALESDTRVLAFEA 210 (297)
T ss_dssp HHHHHHHGGGEEEEEEEEEEECGGGT---------SCCTTCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCceEEEEeccccc---------cCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 88888887653123678888764321 123322 245666665556666666654
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.4e-05 Score=69.32 Aligned_cols=109 Identities=15% Similarity=0.169 Sum_probs=64.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-CcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~al~~aDv 84 (320)
|||+|+| +|.+|+.++..|.+.|+ +|.++++++ .+.++.....+....... ...+..+++. +++.++|+
T Consensus 3 mkI~IiG-aGaiG~~~a~~L~~~g~-------~V~~~~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVG-AGALGLYYGALLQRSGE-------DVHFLLRRD-YEAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDL 72 (312)
T ss_dssp -CEEEEC-CSTTHHHHHHHHHHTSC-------CEEEECSTT-HHHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSE
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEEcCc-HHHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCE
Confidence 6899999 59999999999999886 799999863 111110000001000000 0123344454 45789999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
||++.-. .. +.++++.++.+-.++..+|.+.|-++....+
T Consensus 73 vilavk~----~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l 112 (312)
T 3hn2_A 73 VLVGLKT----FA------------NSRYEELIRPLVEEGTQILTLQNGLGNEEAL 112 (312)
T ss_dssp EEECCCG----GG------------GGGHHHHHGGGCCTTCEEEECCSSSSHHHHH
T ss_pred EEEecCC----CC------------cHHHHHHHHhhcCCCCEEEEecCCCCcHHHH
Confidence 9998521 11 2345566666544667788888987654433
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00015 Score=65.97 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=62.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEec--CCccchhHHHHHHHhcccC-C-CC---cceEEeC--Chh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI--PPAAEALNGVKMELVDAAF-P-LL---KGVVATT--DAV 76 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~--~~~~~~~~~~~~dl~~~~~-~-~~---~~v~~~~--~~~ 76 (320)
|||+|+| +|.+|+.++..|.+.|+ +|.++|+ ++ ++++ .+..... . .. ..+..++ +..
T Consensus 1 m~I~iiG-~G~mG~~~a~~L~~~g~-------~V~~~~r~~~~--~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~ 66 (335)
T 1txg_A 1 MIVSILG-AGAMGSALSVPLVDNGN-------EVRIWGTEFDT--EILK----SISAGREHPRLGVKLNGVEIFWPEQLE 66 (335)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCC-------EEEEECCGGGH--HHHH----HHHTTCCBTTTTBCCCSEEEECGGGHH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEEccCCH--HHHH----HHHHhCcCcccCccccceEEecHHhHH
Confidence 5899999 59999999999999887 8999998 53 3332 1221110 0 00 2345555 666
Q ss_pred hhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
++++++|+||++.... .+.++++.+.. ..++..+|.++|.+
T Consensus 67 ~~~~~~D~vi~~v~~~----------------~~~~v~~~i~~-l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 67 KCLENAEVVLLGVSTD----------------GVLPVMSRILP-YLKDQYIVLISKGL 107 (335)
T ss_dssp HHHTTCSEEEECSCGG----------------GHHHHHHHHTT-TCCSCEEEECCCSE
T ss_pred HHHhcCCEEEEcCChH----------------HHHHHHHHHhc-CCCCCEEEEEcCcC
Confidence 7789999999986321 12334444544 33566677777766
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.83 E-value=3e-05 Score=67.92 Aligned_cols=100 Identities=15% Similarity=0.287 Sum_probs=62.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
+|||+|+| +|.+|++++..|...|+.. ..+|.++|+++ ++++....++ .+....+..++++++|+
T Consensus 2 ~~~i~iIG-~G~mG~~~a~~l~~~g~~~---~~~V~~~~r~~--~~~~~~~~~~---------g~~~~~~~~e~~~~aDv 66 (247)
T 3gt0_A 2 DKQIGFIG-CGNMGMAMIGGMINKNIVS---SNQIICSDLNT--ANLKNASEKY---------GLTTTTDNNEVAKNADI 66 (247)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTSSC---GGGEEEECSCH--HHHHHHHHHH---------CCEECSCHHHHHHHCSE
T ss_pred CCeEEEEC-ccHHHHHHHHHHHhCCCCC---CCeEEEEeCCH--HHHHHHHHHh---------CCEEeCChHHHHHhCCE
Confidence 36899999 6999999999999988632 12689999874 3333222111 23344577788899999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
||++.- + . .+.++++.+..+..++..+|..++.+.
T Consensus 67 Vilav~-~---~------------~~~~v~~~l~~~l~~~~~vvs~~~gi~ 101 (247)
T 3gt0_A 67 LILSIK-P---D------------LYASIINEIKEIIKNDAIIVTIAAGKS 101 (247)
T ss_dssp EEECSC-T---T------------THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred EEEEeC-H---H------------HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 999861 1 1 134455666665435555554555443
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.3e-05 Score=74.53 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=46.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|+.++|||+|+|| |+||+.++..|.+. + +|.+.|++. ++++. +.+......-++....++.+.++
T Consensus 12 ~~g~~mkilvlGa-G~vG~~~~~~L~~~-~-------~v~~~~~~~--~~~~~----~~~~~~~~~~d~~d~~~l~~~~~ 76 (365)
T 3abi_A 12 IEGRHMKVLILGA-GNIGRAIAWDLKDE-F-------DVYIGDVNN--ENLEK----VKEFATPLKVDASNFDKLVEVMK 76 (365)
T ss_dssp ----CCEEEEECC-SHHHHHHHHHHTTT-S-------EEEEEESCH--HHHHH----HTTTSEEEECCTTCHHHHHHHHT
T ss_pred ccCCccEEEEECC-CHHHHHHHHHHhcC-C-------CeEEEEcCH--HHHHH----HhccCCcEEEecCCHHHHHHHHh
Confidence 6778899999996 99999999888653 2 789999863 33321 11111111112222234667789
Q ss_pred CCcEEEEeCC
Q 020875 81 GVNIAVMVGG 90 (320)
Q Consensus 81 ~aDvVi~~ag 90 (320)
++|+||.+++
T Consensus 77 ~~DvVi~~~p 86 (365)
T 3abi_A 77 EFELVIGALP 86 (365)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEEecC
Confidence 9999999875
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0001 Score=65.62 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=57.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.+|+.++..|.. |+ +|.++|+++ ++++.. .... +...+ ..++++++|+|
T Consensus 2 ~~i~iiG-~G~~G~~~a~~l~~-g~-------~V~~~~~~~--~~~~~~----~~~g------~~~~~-~~~~~~~~D~v 59 (289)
T 2cvz_A 2 EKVAFIG-LGAMGYPMAGHLAR-RF-------PTLVWNRTF--EKALRH----QEEF------GSEAV-PLERVAEARVI 59 (289)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHT-TS-------CEEEECSST--HHHHHH----HHHH------CCEEC-CGGGGGGCSEE
T ss_pred CeEEEEc-ccHHHHHHHHHHhC-CC-------eEEEEeCCH--HHHHHH----HHCC------CcccC-HHHHHhCCCEE
Confidence 6899999 69999999999998 86 799999874 333221 1111 11122 55678899999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
|++...+ ..+.++++.+.....++..++..+|..
T Consensus 60 i~~v~~~---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~ 93 (289)
T 2cvz_A 60 FTCLPTT---------------REVYEVAEALYPYLREGTYWVDATSGE 93 (289)
T ss_dssp EECCSSH---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred EEeCCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 9985321 012334455554443566666667643
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=97.81 E-value=9.9e-05 Score=70.64 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=89.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA------ 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a------ 78 (320)
.+.++||||+|.+|.+++..|++.|. +|+++++++..+.+.....++. ......++....+..+.
T Consensus 213 gk~~LVTGgsgGIG~aiA~~La~~Ga-------~Vvl~~r~~~~~~l~~~~~~~~--~~~~~~Dvtd~~~v~~~~~~~~~ 283 (454)
T 3u0b_A 213 GKVAVVTGAARGIGATIAEVFARDGA-------TVVAIDVDGAAEDLKRVADKVG--GTALTLDVTADDAVDKITAHVTE 283 (454)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEECGGGHHHHHHHHHHHT--CEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCEEEEeCCchHHHHHHHHHHHHCCC-------EEEEEeCCccHHHHHHHHHHcC--CeEEEEecCCHHHHHHHHHHHHH
Confidence 35899999999999999999999886 7999998643222222211111 00001122211222222
Q ss_pred -cCC-CcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 79 -CTG-VNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 79 -l~~-aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
+.+ .|+|||.||+..... .+ ....+..|+.....+.+.+..... +...+|++|+-... .+.
T Consensus 284 ~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~---------~g~ 354 (454)
T 3u0b_A 284 HHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGI---------AGN 354 (454)
T ss_dssp HSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHH---------HCC
T ss_pred HcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhC---------CCC
Confidence 224 999999999864321 22 234678899999888888776411 34578888864321 122
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcC
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
+..-.|+.++.-...+-..+++.+.
T Consensus 355 ~g~~~YaasKaal~~l~~~la~e~~ 379 (454)
T 3u0b_A 355 RGQTNYATTKAGMIGLAEALAPVLA 379 (454)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3222455555545556666777664
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.9e-05 Score=67.78 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=94.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCC-------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTD------- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~------- 74 (320)
.+.+.||||++.+|.+++..|++.|. .|++.|+++ ++++....++..... ....+++...+
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga-------~Vvi~~~~~--~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~ 79 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGA-------RVILNDIRA--TLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSK 79 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-------EEEECCSCH--HHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 46788999999999999999999997 899999874 445544445543221 11122222222
Q ss_pred hhhhcCCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 75 AVEACTGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
..+.+-..|++|+.||...... . +.+..+..|+... +..++.+.+.. ..+.+|++|+-...
T Consensus 80 ~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~~G~IVnisS~~~~-------- 150 (255)
T 4g81_D 80 LDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARN-SGGKIINIGSLTSQ-------- 150 (255)
T ss_dssp HHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGT--------
T ss_pred HHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc-CCCEEEEEeehhhc--------
Confidence 2223456899999999754321 1 2344667777654 44555554443 45788888864421
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|..-.|+.++---..|-+.+|..++ +..||
T Consensus 151 -~~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIr 183 (255)
T 4g81_D 151 -AARPTVAPYTAAKGGIKMLTCSMAAEWA--QFNIQ 183 (255)
T ss_dssp -SBCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence 1223222455555555567777887776 45666
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.80 E-value=8.5e-05 Score=67.00 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=55.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
+||+|+||+|.+|..++..|...|+ +|.++|+++ + .+..+++++||+|
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~-------~V~~~~~~~--~-----------------------~~~~~~~~~aDvV 69 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGY-------PISILDRED--W-----------------------AVAESILANADVV 69 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC-------CEEEECTTC--G-----------------------GGHHHHHTTCSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-------eEEEEECCc--c-----------------------cCHHHHhcCCCEE
Confidence 5899999669999999999998886 789999763 1 0345678899999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
|++.... .+.++++.+..+.+++.+++.++
T Consensus 70 ilavp~~----------------~~~~vl~~l~~~l~~~~iv~~~~ 99 (298)
T 2pv7_A 70 IVSVPIN----------------LTLETIERLKPYLTENMLLADLT 99 (298)
T ss_dssp EECSCGG----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred EEeCCHH----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence 9986311 13445556655543566555544
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00011 Score=64.47 Aligned_cols=153 Identities=17% Similarity=0.124 Sum_probs=89.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCChhhhc--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTDAVEAC-- 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~~~~al-- 79 (320)
.+.+.||||++-||.+++..|++.|. .|++.|++..++.+ ..+..... ....++....+..+.+
T Consensus 9 GKvalVTGas~GIG~aiA~~la~~Ga-------~Vvi~~r~~~~~~~----~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~ 77 (247)
T 4hp8_A 9 GRKALVTGANTGLGQAIAVGLAAAGA-------EVVCAARRAPDETL----DIIAKDGGNASALLIDFADPLAAKDSFTD 77 (247)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSCCHHHH----HHHHHTTCCEEEEECCTTSTTTTTTSSTT
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHcCC-------EEEEEeCCcHHHHH----HHHHHhCCcEEEEEccCCCHHHHHHHHHh
Confidence 35788899999999999999999997 89999987532211 11221110 1111222222222222
Q ss_pred CCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHH----HHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 80 TGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKA----QASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~----i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
-..|++|+.||+..... . +.+..+..|+..... .++.+.+.+ ..+.+|++|+-... .+.|
T Consensus 78 g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g-~~G~IVnisS~~~~---------~g~~ 147 (247)
T 4hp8_A 78 AGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKG-RSGKVVNIASLLSF---------QGGI 147 (247)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGT---------SCCS
T ss_pred CCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CCcEEEEEechhhC---------CCCC
Confidence 35799999999854321 1 244567788766544 445555554 45788998864321 1222
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..-.|+.++---.-|-+.+|..++ +..|+
T Consensus 148 ~~~~Y~asKaav~~ltr~lA~Ela--~~gIr 176 (247)
T 4hp8_A 148 RVPSYTAAKHGVAGLTKLLANEWA--AKGIN 176 (247)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred CChHHHHHHHHHHHHHHHHHHHHh--hcCeE
Confidence 222355555555566667777766 45666
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=7.2e-05 Score=66.19 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=89.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCC------
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTD------ 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~------ 74 (320)
+.+.+.||||++-||.+++..|++.|. .|++.|++++. .+ ....+..... .+..+++...+
T Consensus 6 ~gKvalVTGas~GIG~aia~~la~~Ga-------~Vv~~~r~~~~--~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~ 75 (258)
T 4gkb_A 6 QDKVVIVTGGASGIGGAISMRLAEERA-------IPVVFARHAPD--GA-FLDALAQRQPRATYLPVELQDDAQCRDAVA 75 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCC--HH-HHHHHHHHCTTCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCccc--HH-HHHHHHhcCCCEEEEEeecCCHHHHHHHHH
Confidence 457889999999999999999999986 79999987532 11 1112221111 11112221111
Q ss_pred -hhhhcCCCcEEEEeCCCCCCCC--CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 75 -AVEACTGVNIAVMVGGFPRKEG--ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 75 -~~~al~~aDvVi~~ag~~~~~~--~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
..+.+-..|++|+.||+..... .+ ....+..|+... +..++.+++. .+.+|++++-...
T Consensus 76 ~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~---~G~IVnisS~~~~-------- 144 (258)
T 4gkb_A 76 QTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT---RGAIVNISSKTAV-------- 144 (258)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCTHHH--------
T ss_pred HHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---CCeEEEEeehhhc--------
Confidence 2233557899999999854322 22 233566676554 4445555433 2678888864321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|..-.|+.++---..|-+.+|..++ +..||
T Consensus 145 -~~~~~~~~Y~asKaav~~ltr~lA~ela--~~gIr 177 (258)
T 4gkb_A 145 -TGQGNTSGYCASKGAQLALTREWAVALR--EHGVR 177 (258)
T ss_dssp -HCCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred -cCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCeE
Confidence 1233222466666555667777887776 44555
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00017 Score=63.60 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=96.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCC------
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD------ 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~------ 74 (320)
+.+.+.||||++-+|.+++..|++.|. .|++.|+++ ++++....++...... ...+++...+
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga-------~Vv~~~~~~--~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~ 76 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDS-------IVVAVELLE--DRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVR 76 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 456889999999999999999999986 899999974 5555555555433211 1122222111
Q ss_pred -hhhhcCCCcEEEEeCCCCC--CCC--CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 75 -AVEACTGVNIAVMVGGFPR--KEG--ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 75 -~~~al~~aDvVi~~ag~~~--~~~--~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
..+.+-..|++|+.||+.. .+- .+ .+..+..|+... +..++.+.+.. .+.+|++|+-...
T Consensus 77 ~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IVnisS~~g~------ 148 (254)
T 4fn4_A 77 RTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG--KGVIVNTASIAGI------ 148 (254)
T ss_dssp HHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT------
T ss_pred HHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEechhhc------
Confidence 2233557899999999643 221 22 344566776544 55566666654 4788888864321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++--...|-+.+|..++ +..||.
T Consensus 149 ---~~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrV 182 (254)
T 4fn4_A 149 ---RGGFAGAPYTVAKHGLIGLTRSIAAHYG--DQGIRA 182 (254)
T ss_dssp ---CSSSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ---CCCCCChHHHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 1223222456665555667777887765 456763
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.80 E-value=7.8e-05 Score=66.89 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=48.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.+|..++..|...|+ +|.++|+++ ++++. +.+. .+....+..++++++|+|
T Consensus 6 m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~~~~--~~~~~----~~~~------g~~~~~~~~~~~~~~D~v 65 (299)
T 1vpd_A 6 MKVGFIG-LGIMGKPMSKNLLKAGY-------SLVVSDRNP--EAIAD----VIAA------GAETASTAKAIAEQCDVI 65 (299)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHHT------TCEECSSHHHHHHHCSEE
T ss_pred ceEEEEC-chHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHH----HHHC------CCeecCCHHHHHhCCCEE
Confidence 6999999 69999999999998886 899999863 33322 2211 233445677788899999
Q ss_pred EEeCC
Q 020875 86 VMVGG 90 (320)
Q Consensus 86 i~~ag 90 (320)
|++..
T Consensus 66 i~~v~ 70 (299)
T 1vpd_A 66 ITMLP 70 (299)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 99863
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.4e-05 Score=77.95 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH---HH-HhcccC--C--------CCcce
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK---ME-LVDAAF--P--------LLKGV 69 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~---~d-l~~~~~--~--------~~~~v 69 (320)
+.+||+|+| +|.+|+.++..|+..|+ +|+++|+++ ++++.-. .+ +..... . ....+
T Consensus 313 ~i~kV~VIG-aG~MG~~iA~~la~aG~-------~V~l~D~~~--~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 382 (715)
T 1wdk_A 313 DVKQAAVLG-AGIMGGGIAYQSASKGT-------PILMKDINE--HGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGI 382 (715)
T ss_dssp CCSSEEEEC-CHHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHE
T ss_pred cCCEEEEEC-CChhhHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCe
Confidence 347899999 69999999999999997 799999974 3332110 01 100000 0 01246
Q ss_pred EEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 70 ~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
+.++++ +++++||+||.+.. . +....+.+...+.++.+++++ ++||..
T Consensus 383 ~~~~d~-~~~~~aDlVIeaV~--e------------~~~vk~~v~~~l~~~~~~~~I--lasntS 430 (715)
T 1wdk_A 383 RPTLSY-GDFGNVDLVVEAVV--E------------NPKVKQAVLAEVENHVREDAI--LASNTS 430 (715)
T ss_dssp EEESSS-TTGGGCSEEEECCC--S------------CHHHHHHHHHHHHTTSCTTCE--EEECCS
T ss_pred EEECCH-HHHCCCCEEEEcCC--C------------CHHHHHHHHHHHHhhCCCCeE--EEeCCC
Confidence 677776 78999999999852 1 123345666677777756653 355543
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00013 Score=66.21 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
.+|||+|+| +|.+|+.++..|...|+ +|.++|+++ ++++. +... .+....+..++++++|
T Consensus 29 ~~~~I~iIG-~G~mG~~~a~~l~~~g~-------~V~~~~~~~--~~~~~----~~~~------g~~~~~~~~~~~~~~D 88 (316)
T 2uyy_A 29 TDKKIGFLG-LGLMGSGIVSNLLKMGH-------TVTVWNRTA--EKCDL----FIQE------GARLGRTPAEVVSTCD 88 (316)
T ss_dssp CSSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSG--GGGHH----HHHT------TCEECSCHHHHHHHCS
T ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHHH----HHHc------CCEEcCCHHHHHhcCC
Confidence 348999999 69999999999998886 799999874 33332 1111 1233446778888999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 89 vVi~av 94 (316)
T 2uyy_A 89 ITFACV 94 (316)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999985
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.78 E-value=8.2e-05 Score=68.15 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=49.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-CcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~al~~aD 83 (320)
++||+|+| +|.+|++++..|++.|+ +|.++|+++ ++++....+-.....+. ...+...++..+ ++++|
T Consensus 14 ~~kI~iIG-~G~mG~ala~~L~~~G~-------~V~~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aD 82 (335)
T 1z82_A 14 EMRFFVLG-AGSWGTVFAQMLHENGE-------EVILWARRK--EIVDLINVSHTSPYVEESKITVRATNDLEE-IKKED 82 (335)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSH--HHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTE
T ss_pred CCcEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCC
Confidence 58999999 69999999999999887 899999863 33332221100000000 003556666666 89999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 83 vVil~v 88 (335)
T 1z82_A 83 ILVIAI 88 (335)
T ss_dssp EEEECS
T ss_pred EEEEEC
Confidence 999985
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00035 Score=61.98 Aligned_cols=92 Identities=20% Similarity=0.161 Sum_probs=60.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.+|+.++..|...|+ +|.++|+++ ++++. +..... ......+..++ +++|+|
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~~~~--~~~~~----~~~~g~----~~~~~~~~~~~-~~~D~v 61 (279)
T 2f1k_A 1 MKIGVVG-LGLIGASLAGDLRRRGH-------YLIGVSRQQ--STCEK----AVERQL----VDEAGQDLSLL-QTAKII 61 (279)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHH----HHHTTS----CSEEESCGGGG-TTCSEE
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHH----HHhCCC----CccccCCHHHh-CCCCEE
Confidence 6899999 69999999999998886 899999863 33322 111110 01234466676 999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
|++... ..+.++++.+..+..++..++.++|
T Consensus 62 i~av~~----------------~~~~~~~~~l~~~~~~~~~vv~~~~ 92 (279)
T 2f1k_A 62 FLCTPI----------------QLILPTLEKLIPHLSPTAIVTDVAS 92 (279)
T ss_dssp EECSCH----------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred EEECCH----------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence 998531 1234555666665435666666644
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.8e-05 Score=67.56 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++|||+|+| +|.+|+.++..|...|+ +|.++| ++ ++++. +... .+....+..++++++|
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~-~~--~~~~~----~~~~------g~~~~~~~~~~~~~~D 60 (295)
T 1yb4_A 2 NAMKLGFIG-LGIMGSPMAINLARAGH-------QLHVTT-IG--PVADE----LLSL------GAVNVETARQVTEFAD 60 (295)
T ss_dssp --CEEEECC-CSTTHHHHHHHHHHTTC-------EEEECC-SS--CCCHH----HHTT------TCBCCSSHHHHHHTCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCC-------EEEEEc-CH--HHHHH----HHHc------CCcccCCHHHHHhcCC
Confidence 468999999 69999999999998886 899999 64 33332 1111 1222346777788999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 61 ~vi~~v 66 (295)
T 1yb4_A 61 IIFIMV 66 (295)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999985
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=7e-05 Score=66.64 Aligned_cols=101 Identities=10% Similarity=0.071 Sum_probs=62.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CCCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~~~~v~~~~~~~~al~~aDv 84 (320)
|||+|+| +|.+|+.++..|.+.|+ +|.++|+++ ++++. +..... ..........+..++++++|+
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g~-------~V~~~~r~~--~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~d~ 66 (291)
T 1ks9_A 1 MKITVLG-CGALGQLWLTALCKQGH-------EVQGWLRVP--QPYCS----VNLVETDGSIFNESLTANDPDFLATSDL 66 (291)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSC--CSEEE----EEEECTTSCEEEEEEEESCHHHHHTCSE
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCC-------CEEEEEcCc--cceee----EEEEcCCCceeeeeeeecCccccCCCCE
Confidence 6899999 59999999999999887 899999875 22221 211100 000011111233567889999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
||++.... . +.++++.+..+..++..++.++|..+.
T Consensus 67 vi~~v~~~----~------------~~~v~~~l~~~l~~~~~vv~~~~g~~~ 102 (291)
T 1ks9_A 67 LLVTLKAW----Q------------VSDAVKSLASTLPVTTPILLIHNGMGT 102 (291)
T ss_dssp EEECSCGG----G------------HHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred EEEEecHH----h------------HHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence 99986321 0 234455565554456677778887644
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=7e-05 Score=72.77 Aligned_cols=122 Identities=15% Similarity=0.059 Sum_probs=75.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-chhHHHHHHHhcccCC---CCcceEEeCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDAAFP---LLKGVVATTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al~ 80 (320)
..+|+||||+|++|.+++..|++.|.. .|++.+++... +.+.....++...... ...++....++.+.++
T Consensus 259 ~~~vLITGgtGgIG~~lA~~La~~G~~------~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~ 332 (511)
T 2z5l_A 259 SGTVLITGGMGAIGRRLARRLAAEGAE------RLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVT 332 (511)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCS------EEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCc------EEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHh
Confidence 468999999999999999999988862 58889886421 1222223334322110 0122222223444454
Q ss_pred C--CcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 81 G--VNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 81 ~--aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+ .|+|||+||+.... ..+ ....+..|+.....+.+.+.... +...+|++|+-
T Consensus 333 ~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~-~~~~~V~~SS~ 392 (511)
T 2z5l_A 333 AYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIK-GLDAFVLFSSV 392 (511)
T ss_dssp HSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCT-TCCCEEEEEEG
T ss_pred cCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCEEEEEeCH
Confidence 3 89999999975422 122 23456789999999888876541 22456777653
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.76 E-value=6.4e-05 Score=59.10 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+.|||+|+| +|++|+.++..|...|+ +++++|+++
T Consensus 3 ~~m~i~IiG-~G~iG~~~a~~L~~~g~-------~v~~~d~~~ 37 (140)
T 1lss_A 3 HGMYIIIAG-IGRVGYTLAKSLSEKGH-------DIVLIDIDK 37 (140)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH
Confidence 458999999 59999999999998886 899999863
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00019 Score=69.16 Aligned_cols=100 Identities=14% Similarity=0.020 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC--
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG-- 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~-- 81 (320)
.++||+|+| .|.+|++++..|+..|+ +|.++|+++ ++++....... ...+..+.++.+++++
T Consensus 14 ~~~~IgvIG-lG~MG~~lA~~La~~G~-------~V~v~~r~~--~~~~~l~~~~~------~~gi~~~~s~~e~v~~l~ 77 (480)
T 2zyd_A 14 SKQQIGVVG-MAVMGRNLALNIESRGY-------TVSIFNRSR--EKTEEVIAENP------GKKLVPYYTVKEFVESLE 77 (480)
T ss_dssp -CBSEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSSH--HHHHHHHHHST------TSCEEECSSHHHHHHTBC
T ss_pred CCCeEEEEc-cHHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHhhCC------CCCeEEeCCHHHHHhCCC
Confidence 356899999 69999999999999887 799999863 33332211110 0235556677777766
Q ss_pred -CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 82 -VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 82 -aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
+|+||++...+ . .++++++.+.....++.++|..+|..
T Consensus 78 ~aDvVil~Vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~s~g~ 116 (480)
T 2zyd_A 78 TPRRILLMVKAG----A-----------GTDAAIDSLKPYLDKGDIIIDGGNTF 116 (480)
T ss_dssp SSCEEEECSCSS----S-----------HHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCCEEEEECCCH----H-----------HHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 99999985321 1 12344455555544566777778765
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0007 Score=60.08 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=47.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC-CCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-GVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~-~aD 83 (320)
++||+|+| +|.+|..++..|...|+. .+|.++|+++ ++++. +.... . .....++..++++ ++|
T Consensus 1 m~~I~iIG-~G~mG~~~a~~l~~~g~~-----~~V~~~d~~~--~~~~~----~~~~g--~--~~~~~~~~~~~~~~~aD 64 (281)
T 2g5c_A 1 MQNVLIVG-VGFMGGSFAKSLRRSGFK-----GKIYGYDINP--ESISK----AVDLG--I--IDEGTTSIAKVEDFSPD 64 (281)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCC-----SEEEEECSCH--HHHHH----HHHTT--S--CSEEESCGGGGGGTCCS
T ss_pred CcEEEEEe-cCHHHHHHHHHHHhcCCC-----cEEEEEeCCH--HHHHH----HHHCC--C--cccccCCHHHHhcCCCC
Confidence 36999999 699999999999987752 2789999863 33221 11111 0 1122346667888 999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 65 vVilav 70 (281)
T 2g5c_A 65 FVMLSS 70 (281)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999985
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00028 Score=67.91 Aligned_cols=99 Identities=13% Similarity=-0.001 Sum_probs=63.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG--- 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~--- 81 (320)
++||+|+| +|.+|+.++..|...|+ +|.++|+++ ++++....... ...+....+..+++++
T Consensus 5 ~~~IgvIG-~G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~------~~gi~~~~s~~e~v~~l~~ 68 (474)
T 2iz1_A 5 QANFGVVG-MAVMGKNLALNVESRGY-------TVAIYNRTT--SKTEEVFKEHQ------DKNLVFTKTLEEFVGSLEK 68 (474)
T ss_dssp TBSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHTT------TSCEEECSSHHHHHHTBCS
T ss_pred CCcEEEEe-eHHHHHHHHHHHHhCCC-------EEEEEcCCH--HHHHHHHHhCc------CCCeEEeCCHHHHHhhccC
Confidence 47999999 69999999999999887 799999863 33332221111 0235555667666655
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
+|+||++...+ ..+.++++.+.....++..+|..+|..
T Consensus 69 aDvVilavp~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (474)
T 2iz1_A 69 PRRIMLMVQAG---------------AATDATIKSLLPLLDIGDILIDGGNTH 106 (474)
T ss_dssp SCEEEECCCTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCEEEEEccCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 99999985321 112334455555543556667677754
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00014 Score=65.85 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=49.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
++||+|+| .|.+|..++..|...|+ +|.++|+++ ++++. +... ......+..++++++|+
T Consensus 9 ~~~IgiIG-~G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~------g~~~~~~~~e~~~~aDv 68 (306)
T 3l6d_A 9 EFDVSVIG-LGAMGTIMAQVLLKQGK-------RVAIWNRSP--GKAAA----LVAA------GAHLCESVKAALSASPA 68 (306)
T ss_dssp SCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHH----HHHH------TCEECSSHHHHHHHSSE
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH----HHHC------CCeecCCHHHHHhcCCE
Confidence 47999999 69999999999999887 799999874 33332 2111 12344577888999999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 69 Vi~~v 73 (306)
T 3l6d_A 69 TIFVL 73 (306)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 99975
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0002 Score=68.91 Aligned_cols=102 Identities=13% Similarity=0.045 Sum_probs=62.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC---CC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT---GV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~---~a 82 (320)
|||+|+| +|.+|+.++..|...|+ +|.++|+++ ++++....... ..+....+....+..++++ ++
T Consensus 2 MkIgVIG-~G~mG~~lA~~La~~G~-------~V~v~dr~~--~~~~~l~~~~g--~~~~~~~i~~~~~~~e~v~~l~~a 69 (478)
T 1pgj_A 2 MDVGVVG-LGVMGANLALNIAEKGF-------KVAVFNRTY--SKSEEFMKANA--SAPFAGNLKAFETMEAFAASLKKP 69 (478)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHTT--TSTTGGGEEECSCHHHHHHHBCSS
T ss_pred CEEEEEC-hHHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhcC--CCCCCCCeEEECCHHHHHhcccCC
Confidence 6899999 69999999999999887 799999863 33332221111 0011123555566666555 59
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
|+||++.... . .+.++++.+..+..++..+|..+|..
T Consensus 70 DvVilaVp~~----~-----------~v~~vl~~l~~~l~~g~iIId~sng~ 106 (478)
T 1pgj_A 70 RKALILVQAG----A-----------ATDSTIEQLKKVFEKGDILVDTGNAH 106 (478)
T ss_dssp CEEEECCCCS----H-----------HHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred CEEEEecCCh----H-----------HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 9999986321 0 12333344444433455666677754
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00056 Score=60.12 Aligned_cols=161 Identities=9% Similarity=0.073 Sum_probs=93.5
Q ss_pred CCCCCCEEEEEcCCC--hhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC----CCcceEEeCC
Q 020875 1 MAKEPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTD 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~~~~ 74 (320)
|+-+.+.++||||+| -||.+++..|++.|. .|++.|+++ +.++.....+...... ...+++...+
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-------~Vvi~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 72 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGA-------KLVFTYRKE--RSRKELEKLLEQLNQPEAHLYQIDVQSDEE 72 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-------EEEEEESSG--GGHHHHHHHHGGGTCSSCEEEECCTTCHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCcEEEEEccCCCHHH
Confidence 344567899999877 799999999999997 899999874 3333333333332211 0112221111
Q ss_pred -------hhhhcCCCcEEEEeCCCCCCC-------CCCHHHH---HHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh
Q 020875 75 -------AVEACTGVNIAVMVGGFPRKE-------GMERKDV---MSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 75 -------~~~al~~aDvVi~~ag~~~~~-------~~~r~~~---~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~ 137 (320)
..+.+-..|++|+.||..... ..+++++ +..|.......++.........+.+|++|+-...
T Consensus 73 v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~- 151 (256)
T 4fs3_A 73 VINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGE- 151 (256)
T ss_dssp HHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGT-
T ss_pred HHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccc-
Confidence 123355789999999864311 1223332 3456665555566555554345788888764321
Q ss_pred HHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++---..|-+.+|..++ |..|+.
T Consensus 152 --------~~~~~~~~Y~asKaal~~ltr~lA~Ela--~~gIrV 185 (256)
T 4fs3_A 152 --------FAVQNYNVMGVAKASLEANVKYLALDLG--PDNIRV 185 (256)
T ss_dssp --------SCCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --------cCcccchhhHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 1223222456665555667777777765 556763
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00038 Score=65.96 Aligned_cols=108 Identities=15% Similarity=0.216 Sum_probs=66.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--------------CcceEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--------------LKGVVA 71 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--------------~~~v~~ 71 (320)
.|..|+| .|++|.+++..|++.|+ +|+++|+++ ++++ .|.....+. ...+..
T Consensus 12 ~~~~ViG-lGyvGlp~A~~La~~G~-------~V~~~D~~~--~kv~----~L~~g~~pi~epgl~~ll~~~~~~g~l~~ 77 (431)
T 3ojo_A 12 SKLTVVG-LGYIGLPTSIMFAKHGV-------DVLGVDINQ--QTID----KLQNGQISIEEPGLQEVYEEVLSSGKLKV 77 (431)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHTTCCSSCCTTHHHHHHHHHHTTCEEE
T ss_pred CccEEEe-eCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHH----HHHCCCCCcCCCCHHHHHHhhcccCceEE
Confidence 5899999 79999999999999998 899999974 4333 233221111 235667
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc-Ccch
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPAN 135 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s-nP~~ 135 (320)
+++ +++||+||++.+.|....... ..++..++..++.+.++..++..+|.-| -|.+
T Consensus 78 ttd----~~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pg 134 (431)
T 3ojo_A 78 STT----PEASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPK 134 (431)
T ss_dssp ESS----CCCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTT
T ss_pred eCc----hhhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChh
Confidence 665 468999999988775322000 1122334444555555543444444333 3444
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00063 Score=56.33 Aligned_cols=138 Identities=13% Similarity=0.077 Sum_probs=76.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhh--cC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEA--CT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a--l~ 80 (320)
.+||+|+| .|.+|..++..|... |+ +|+++|+++ ++++. +...... ...+......+.++ +.
T Consensus 39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~-------~V~vid~~~--~~~~~----~~~~g~~~~~gd~~~~~~l~~~~~~~ 104 (183)
T 3c85_A 39 HAQVLILG-MGRIGTGAYDELRARYGK-------ISLGIEIRE--EAAQQ----HRSEGRNVISGDATDPDFWERILDTG 104 (183)
T ss_dssp TCSEEEEC-CSHHHHHHHHHHHHHHCS-------CEEEEESCH--HHHHH----HHHTTCCEEECCTTCHHHHHTBCSCC
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhccCC-------eEEEEECCH--HHHHH----HHHCCCCEEEcCCCCHHHHHhccCCC
Confidence 36899999 699999999999988 87 799999874 33321 2111110 00111000113344 78
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhh
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld 160 (320)
++|+||.+.+.. ..| ..++..+++.+ |+..++..++..+.. ..+.+. |. ..++.....-
T Consensus 105 ~ad~vi~~~~~~-----------~~~----~~~~~~~~~~~-~~~~ii~~~~~~~~~-~~l~~~--G~--~~vi~p~~~~ 163 (183)
T 3c85_A 105 HVKLVLLAMPHH-----------QGN----QTALEQLQRRN-YKGQIAAIAEYPDQL-EGLLES--GV--DAAFNIYSEA 163 (183)
T ss_dssp CCCEEEECCSSH-----------HHH----HHHHHHHHHTT-CCSEEEEEESSHHHH-HHHHHH--TC--SEEEEHHHHH
T ss_pred CCCEEEEeCCCh-----------HHH----HHHHHHHHHHC-CCCEEEEEECCHHHH-HHHHHc--CC--CEEEchHHHH
Confidence 899999975311 122 23444556655 566666666543322 233442 32 3455554444
Q ss_pred HHHHHHHHHHHcCCCCC
Q 020875 161 HNRALGQISEKLNVQVS 177 (320)
Q Consensus 161 ~~r~~~~~a~~l~v~~~ 177 (320)
..++...+.+.++.+..
T Consensus 164 a~~l~~~~~~~~~~~~~ 180 (183)
T 3c85_A 164 GSGFARHVCKQLEPQFT 180 (183)
T ss_dssp HHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhcCCccc
Confidence 55566666666665544
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00037 Score=67.02 Aligned_cols=100 Identities=8% Similarity=0.052 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC---
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--- 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--- 80 (320)
.+|||+|+| .|.+|.+++..|+..|+ +|.++|+++ ++++. +.... .....+....++.++++
T Consensus 3 ~~~kIgiIG-lG~MG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~----l~~~g-~~g~~i~~~~s~~e~v~~l~ 67 (484)
T 4gwg_A 3 AQADIALIG-LAVMGQNLILNMNDHGF-------VVCAFNRTV--SKVDD----FLANE-AKGTKVVGAQSLKEMVSKLK 67 (484)
T ss_dssp CCBSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSST--HHHHH----HHHTT-TTTSSCEECSSHHHHHHTBC
T ss_pred CCCEEEEEC-hhHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH----HHhcc-cCCCceeccCCHHHHHhhcc
Confidence 567999999 69999999999999997 799999974 33332 22110 00113444455555544
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
++|+||++...+ +.+.++++.+...-.++.++|..||.
T Consensus 68 ~aDvVil~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~ 105 (484)
T 4gwg_A 68 KPRRIILLVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNS 105 (484)
T ss_dssp SSCEEEECSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCC
T ss_pred CCCEEEEecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 699999975321 12334445555554455667777764
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00029 Score=65.29 Aligned_cols=93 Identities=16% Similarity=0.253 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV- 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a- 82 (320)
++|||+||| .|.+|..++..|+..|+ +|.++|+++ ++++ .+... .+....+..++++++
T Consensus 21 ~~mkIgiIG-lG~mG~~~A~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~------g~~~~~s~~e~~~~a~ 80 (358)
T 4e21_A 21 QSMQIGMIG-LGRMGADMVRRLRKGGH-------ECVVYDLNV--NAVQ----ALERE------GIAGARSIEEFCAKLV 80 (358)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHTT------TCBCCSSHHHHHHHSC
T ss_pred cCCEEEEEC-chHHHHHHHHHHHhCCC-------EEEEEeCCH--HHHH----HHHHC------CCEEeCCHHHHHhcCC
Confidence 347999999 79999999999999987 899999863 3332 22221 122334677777777
Q ss_pred --cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 83 --NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 83 --DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
|+||++.... .+.++++.+.....++.++|..||
T Consensus 81 ~~DvVi~~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st 116 (358)
T 4e21_A 81 KPRVVWLMVPAA----------------VVDSMLQRMTPLLAANDIVIDGGN 116 (358)
T ss_dssp SSCEEEECSCGG----------------GHHHHHHHHGGGCCTTCEEEECSS
T ss_pred CCCEEEEeCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCC
Confidence 9999975211 123344555555445566666665
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.65 E-value=6.4e-05 Score=69.48 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=58.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC-----cCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGV-----MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~-----~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~ 77 (320)
++||+|+||+|.+|+.++..|.+++ .+ +++++....+. +...+-.+.... ....+.. .+ .+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~------ei~~l~s~~~a----gk~~~~~~~~l~~~~~~~~~~-~~-~~ 76 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRL------RIGALTAATSA----GSTLGEHHPHLTPLAHRVVEP-TE-AA 76 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE------EEEEEEESSCT----TSBGGGTCTTCGGGTTCBCEE-CC-HH
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccE------EEEEEECCCcC----CCchhhhcccccccceeeecc-CC-HH
Confidence 4799999999999999999998776 42 77766432211 111111111100 0011221 13 45
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
+++++|+||.+.|... .+++++.+ +.+ +++|..|++.
T Consensus 77 ~~~~~DvVf~alg~~~----------------s~~~~~~~-~~G---~~vIDlSa~~ 113 (352)
T 2nqt_A 77 VLGGHDAVFLALPHGH----------------SAVLAQQL-SPE---TLIIDCGADF 113 (352)
T ss_dssp HHTTCSEEEECCTTSC----------------CHHHHHHS-CTT---SEEEECSSTT
T ss_pred HhcCCCEEEECCCCcc----------------hHHHHHHH-hCC---CEEEEECCCc
Confidence 6789999999876321 24566666 443 6788888775
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00013 Score=58.75 Aligned_cols=77 Identities=9% Similarity=0.081 Sum_probs=45.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-cCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-CTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-l~~aD 83 (320)
..||.|+| +|.+|+.++..|...|+ +++++|++. .++++.....+.+.......+......+.++ ++++|
T Consensus 3 ~~~vlI~G-~G~vG~~la~~L~~~g~-------~V~vid~~~-~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad 73 (153)
T 1id1_A 3 KDHFIVCG-HSILAINTILQLNQRGQ-------NVTVISNLP-EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCR 73 (153)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECCC-HHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCC-------CEEEEECCC-hHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCC
Confidence 45899999 59999999999998886 799999863 1222211111111100001111111123344 88999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+||.+.+
T Consensus 74 ~vi~~~~ 80 (153)
T 1id1_A 74 AILALSD 80 (153)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9999853
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00023 Score=56.41 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=30.2
Q ss_pred CCC-CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 1 m~~-~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
|+. ++++|+|+| +|.+|++++..|...|+ +|+++|+++
T Consensus 1 m~~~~~~~v~I~G-~G~iG~~la~~L~~~g~-------~V~~id~~~ 39 (141)
T 3llv_A 1 MTENGRYEYIVIG-SEAAGVGLVRELTAAGK-------KVLAVDKSK 39 (141)
T ss_dssp -----CCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESCH
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEECCH
Confidence 553 356899999 59999999999999887 799999864
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00013 Score=64.65 Aligned_cols=153 Identities=13% Similarity=0.107 Sum_probs=90.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhH--HHHHHHhcccCCCCcceEE-eCChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN--GVKMELVDAAFPLLKGVVA-TTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~--~~~~dl~~~~~~~~~~v~~-~~~~~~al~ 80 (320)
+.+.+.||||++-||.+++..|++.|. .|++.|+++.+...+ ....|+.+.. .+.. .....+.+-
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~~~~~~~~~~~~~Dv~~~~-----~v~~~~~~~~~~~G 77 (261)
T 4h15_A 10 RGKRALITAGTKGAGAATVSLFLELGA-------QVLTTARARPEGLPEELFVEADLTTKE-----GCAIVAEATRQRLG 77 (261)
T ss_dssp TTCEEEESCCSSHHHHHHHHHHHHTTC-------EEEEEESSCCTTSCTTTEEECCTTSHH-----HHHHHHHHHHHHTS
T ss_pred CCCEEEEeccCcHHHHHHHHHHHHcCC-------EEEEEECCchhCCCcEEEEEcCCCCHH-----HHHHHHHHHHHHcC
Confidence 346889999999999999999999997 899999864321111 1112333221 0000 012334456
Q ss_pred CCcEEEEeCCCCCCC-----CCC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 81 GVNIAVMVGGFPRKE-----GME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~-----~~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
..|++|+.||..... ..+ ....+..|+... +..++.+++.+ .+.+|++++.... .+.
T Consensus 78 ~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~Iv~isS~~~~---------~~~ 146 (261)
T 4h15_A 78 GVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARG--SGVVVHVTSIQRV---------LPL 146 (261)
T ss_dssp SCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SCC
T ss_pred CCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcC--CceEEEEEehhhc---------cCC
Confidence 789999999864321 112 234566776544 55566666653 4778888864321 123
Q ss_pred CCCc-EEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 149 PAKN-ITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 149 ~~~~-i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
|... .|+.++---..|-+.+|..++ +..|+.
T Consensus 147 ~~~~~~Y~asKaal~~lt~~lA~Ela--~~gIrV 178 (261)
T 4h15_A 147 PESTTAYAAAKAALSTYSKAMSKEVS--PKGVRV 178 (261)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 3222 345555555567777777765 456663
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00016 Score=65.63 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=30.0
Q ss_pred CCCEEEEEcC--CChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 4 EPVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 4 ~~~kI~IiGA--~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+.++++|||| +|.||.+++..|++.|. .|++.|++
T Consensus 8 ~~k~~lVTGa~~s~GIG~aia~~la~~G~-------~Vv~~~r~ 44 (319)
T 2ptg_A 8 RGKTAFVAGVADSNGYGWAICKLLRAAGA-------RVLVGTWP 44 (319)
T ss_dssp TTCEEEEECCCCTTSHHHHHHHHHHHTTC-------EEEEEECH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHCCC-------EEEEEecc
Confidence 3468999998 79999999999999986 78888753
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00016 Score=63.52 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=46.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcC-cCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGV-MLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|||+|+| +|.+|+.++..|...| + +|.++|+++ ++++. +.+.. .+....+..+++ ++|+
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g~~-------~v~~~~r~~--~~~~~----~~~~~-----g~~~~~~~~~~~-~~D~ 60 (263)
T 1yqg_A 1 MNVYFLG-GGNMAAAVAGGLVKQGGY-------RIYIANRGA--EKRER----LEKEL-----GVETSATLPELH-SDDV 60 (263)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSC-------EEEEECSSH--HHHHH----HHHHT-----CCEEESSCCCCC-TTSE
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCC-------eEEEECCCH--HHHHH----HHHhc-----CCEEeCCHHHHh-cCCE
Confidence 6899999 6999999999999888 5 899999863 33332 21110 133344566777 9999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 61 vi~~v 65 (263)
T 1yqg_A 61 LILAV 65 (263)
T ss_dssp EEECS
T ss_pred EEEEe
Confidence 99985
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=65.87 Aligned_cols=153 Identities=11% Similarity=0.072 Sum_probs=84.9
Q ss_pred CCCEEEEEcC--CChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc---------cchhHHHHHHHhcccC----C-CCc
Q 020875 4 EPVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA---------AEALNGVKMELVDAAF----P-LLK 67 (320)
Q Consensus 4 ~~~kI~IiGA--~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~---------~~~~~~~~~dl~~~~~----~-~~~ 67 (320)
+.++++|||| +|.+|.+++..|++.|. +|++.|+++. .+++... .++..... . ...
T Consensus 8 ~gk~~lVTGa~~s~GIG~aia~~la~~G~-------~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (315)
T 2o2s_A 8 RGQTAFVAGVADSHGYGWAIAKHLASAGA-------RVALGTWPPVLGLFQKSLQSGRLDED-RKLPDGSLIEFAGVYPL 79 (315)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHTTTC-------EEEEEECHHHHHHHHHHHHHTTTHHH-HBCTTSCBCCCSCEEEC
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHCCC-------EEEEEecccccchhhhhhhhhhhhhh-hhhhccccccccccccc
Confidence 3468999998 79999999999999986 7999886420 0111110 11110000 0 000
Q ss_pred c------------eE--------EeCChhhh-------cCCCcEEEEeCCCCC---CC--CCC---HHHHHHhhHHHHHH
Q 020875 68 G------------VV--------ATTDAVEA-------CTGVNIAVMVGGFPR---KE--GME---RKDVMSKNVSIYKA 112 (320)
Q Consensus 68 ~------------v~--------~~~~~~~a-------l~~aDvVi~~ag~~~---~~--~~~---r~~~~~~n~~~~~~ 112 (320)
+ +. ...+..+. +...|++|+.||... .+ ..+ ....+..|+.....
T Consensus 80 d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~ 159 (315)
T 2o2s_A 80 DAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVS 159 (315)
T ss_dssp CTTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred cccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHH
Confidence 0 00 01122222 336899999998642 11 122 33567889988888
Q ss_pred HHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCC-cEEEeehhhHHHHHHHHHHHcC
Q 020875 113 QASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK-NITCLTRLDHNRALGQISEKLN 173 (320)
Q Consensus 113 i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~-~i~~~t~ld~~r~~~~~a~~l~ 173 (320)
+.+.+..+-.+.+++|++|+-... .+.|.. -.|+.++.-...+-+.+|..++
T Consensus 160 l~~~~~~~m~~~g~Iv~isS~~~~---------~~~~~~~~~Y~asKaal~~l~~~la~el~ 212 (315)
T 2o2s_A 160 LLQHFGPIMNEGGSAVTLSYLAAE---------RVVPGYGGGMSSAKAALESDTRTLAWEAG 212 (315)
T ss_dssp HHHHHSTTEEEEEEEEEEEEGGGT---------SCCTTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEeccccc---------ccCCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence 888876652123677777754321 122322 1456666655566666666653
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00028 Score=63.91 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=68.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHH-HhcccCCCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-LVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~d-l~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+|||+|+| +|.+|+.++..|. .|+ +|.++++++ ++++..... +. ...+............++..++|
T Consensus 2 ~mkI~IiG-aGa~G~~~a~~L~-~g~-------~V~~~~r~~--~~~~~l~~~G~~-~~~~~~~~~~~~~~~~~~~~~~D 69 (307)
T 3ego_A 2 SLKIGIIG-GGSVGLLCAYYLS-LYH-------DVTVVTRRQ--EQAAAIQSEGIR-LYKGGEEFRADCSADTSINSDFD 69 (307)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHH-TTS-------EEEEECSCH--HHHHHHHHHCEE-EEETTEEEEECCEEESSCCSCCS
T ss_pred CCEEEEEC-CCHHHHHHHHHHh-cCC-------ceEEEECCH--HHHHHHHhCCce-EecCCCeecccccccccccCCCC
Confidence 37999999 5999999999999 776 899999863 222221110 00 00000000000001124567899
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE-EEeehh
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRL 159 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i-~~~t~l 159 (320)
+||++.-. . .+.++++.++... ++. +|.+.|-++..- .+.+ -+|.+++ +|.+..
T Consensus 70 ~vilavK~----~------------~~~~~l~~l~~~~-~~~-ivs~~nGi~~~e-~l~~---~~~~~~vl~g~~~~ 124 (307)
T 3ego_A 70 LLVVTVKQ----H------------QLQSVFSSLERIG-KTN-ILFLQNGMGHIH-DLKD---WHVGHSIYVGIVEH 124 (307)
T ss_dssp EEEECCCG----G------------GHHHHHHHTTSSC-CCE-EEECCSSSHHHH-HHHT---CCCSCEEEEEEECC
T ss_pred EEEEEeCH----H------------HHHHHHHHhhcCC-CCe-EEEecCCccHHH-HHHH---hCCCCcEEEEEEee
Confidence 99998521 1 1344566666653 566 788889876432 3333 2566675 444444
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00021 Score=57.75 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=30.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.++|+|+| +|.+|+.++..|...|. +|+++|+++
T Consensus 19 ~~~v~IiG-~G~iG~~la~~L~~~g~-------~V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFG-CGRLGSLIANLASSSGH-------SVVVVDKNE 52 (155)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCG
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH
Confidence 47999999 59999999999998886 899999874
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.56 E-value=8.8e-05 Score=59.26 Aligned_cols=71 Identities=8% Similarity=0.106 Sum_probs=51.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.+||+|+| +|.+|..++..|...|. +|.++|+++ ++++.....+. ..+....+..++++++|+
T Consensus 21 ~~~v~iiG-~G~iG~~~a~~l~~~g~-------~v~v~~r~~--~~~~~~a~~~~-------~~~~~~~~~~~~~~~~Di 83 (144)
T 3oj0_A 21 GNKILLVG-NGMLASEIAPYFSYPQY-------KVTVAGRNI--DHVRAFAEKYE-------YEYVLINDIDSLIKNNDV 83 (144)
T ss_dssp CCEEEEEC-CSHHHHHHGGGCCTTTC-------EEEEEESCH--HHHHHHHHHHT-------CEEEECSCHHHHHHTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEcCCH--HHHHHHHHHhC-------CceEeecCHHHHhcCCCE
Confidence 47999999 59999999988887775 699999874 44433332222 123344577888899999
Q ss_pred EEEeCCCC
Q 020875 85 AVMVGGFP 92 (320)
Q Consensus 85 Vi~~ag~~ 92 (320)
||.+.+.+
T Consensus 84 vi~at~~~ 91 (144)
T 3oj0_A 84 IITATSSK 91 (144)
T ss_dssp EEECSCCS
T ss_pred EEEeCCCC
Confidence 99987654
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00012 Score=57.61 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=29.3
Q ss_pred CCC-CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 1 m~~-~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
|+. +++||+|+|+ |.+|+.++..|...|+ +++++|+++
T Consensus 1 m~~~~~~~v~I~G~-G~iG~~~a~~l~~~g~-------~v~~~d~~~ 39 (144)
T 2hmt_A 1 MGRIKNKQFAVIGL-GRFGGSIVKELHRMGH-------EVLAVDINE 39 (144)
T ss_dssp -----CCSEEEECC-SHHHHHHHHHHHHTTC-------CCEEEESCH
T ss_pred CCCCcCCcEEEECC-CHHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 543 3457999995 9999999999998886 788999863
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00012 Score=65.51 Aligned_cols=80 Identities=10% Similarity=0.142 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCCC-CcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFPL-LKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~~-~~~v~~~~~~~~al~~ 81 (320)
+.++++|+||+|.+|.+++..|++.|. +|++++++. ++++....++... .... ..++....+..+++++
T Consensus 118 ~gk~vlVtGaaGGiG~aia~~L~~~G~-------~V~i~~R~~--~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 188 (287)
T 1lu9_A 118 KGKKAVVLAGTGPVGMRSAALLAGEGA-------EVVLCGRKL--DKAQAAADSVNKRFKVNVTAAETADDASRAEAVKG 188 (287)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHh
Confidence 346899999999999999999999886 799999863 4444333334221 1000 0111111234567888
Q ss_pred CcEEEEeCCCC
Q 020875 82 VNIAVMVGGFP 92 (320)
Q Consensus 82 aDvVi~~ag~~ 92 (320)
+|+||+++|..
T Consensus 189 ~DvlVn~ag~g 199 (287)
T 1lu9_A 189 AHFVFTAGAIG 199 (287)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEECCCcc
Confidence 99999999754
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00062 Score=65.56 Aligned_cols=99 Identities=7% Similarity=0.029 Sum_probs=61.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc---CCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC---TGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al---~~a 82 (320)
|||+|+| +|.+|+.++..|...|+ +|.++|+++ ++++. +.....+ ...+..+.+..+++ +++
T Consensus 3 m~IgvIG-~G~mG~~lA~~La~~G~-------~V~v~dr~~--~~~~~----l~~~~~~-g~gi~~~~~~~e~v~~l~~a 67 (482)
T 2pgd_A 3 ADIALIG-LAVMGQNLILNMNDHGF-------VVCAFNRTV--SKVDD----FLANEAK-GTKVLGAHSLEEMVSKLKKP 67 (482)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSST--HHHHH----HHHTTTT-TSSCEECSSHHHHHHHBCSS
T ss_pred CeEEEEC-hHHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHH----HHhcccc-CCCeEEeCCHHHHHhhccCC
Confidence 6899999 69999999999999887 799999874 33332 2210000 02345556666665 599
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
|+||++...+ ..+.++++.+.....++..+|..+|..
T Consensus 68 DvVilaVp~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~ 104 (482)
T 2pgd_A 68 RRIILLVKAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSE 104 (482)
T ss_dssp CEEEECSCTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred CEEEEeCCCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 9999975321 012233344444433455666676654
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00012 Score=64.23 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++|||+|+| +|.+|+.++..|...|+ +|.++|+++ ++++.....+ . +....+..++++++|
T Consensus 2 ~~m~i~iiG-~G~mG~~~a~~l~~~g~-------~v~~~~~~~--~~~~~~~~~~---g------~~~~~~~~~~~~~~D 62 (259)
T 2ahr_A 2 NAMKIGIIG-VGKMASAIIKGLKQTPH-------ELIISGSSL--ERSKEIAEQL---A------LPYAMSHQDLIDQVD 62 (259)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHTTSSC-------EEEEECSSH--HHHHHHHHHH---T------CCBCSSHHHHHHTCS
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEECCCH--HHHHHHHHHc---C------CEeeCCHHHHHhcCC
Confidence 568999999 69999999999988775 799999863 3333222111 1 122346677788999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+||++..
T Consensus 63 ~Vi~~v~ 69 (259)
T 2ahr_A 63 LVILGIK 69 (259)
T ss_dssp EEEECSC
T ss_pred EEEEEeC
Confidence 9999863
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00022 Score=62.38 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=88.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH--------HHHHHhcccCCCCcceEEeCChhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG--------VKMELVDAAFPLLKGVVATTDAVE 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~--------~~~dl~~~~~~~~~~v~~~~~~~~ 77 (320)
+.+.||||++-||.+++..|++.|. .|++.|++++ .++. ...|+.+.. . .....+
T Consensus 12 K~alVTGas~GIG~aia~~la~~Ga-------~Vv~~~~~~~--~~~~~~~~~~~~~~~Dv~~~~-----~---v~~~~~ 74 (242)
T 4b79_A 12 QQVLVTGGSSGIGAAIAMQFAELGA-------EVVALGLDAD--GVHAPRHPRIRREELDITDSQ-----R---LQRLFE 74 (242)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSTT--STTSCCCTTEEEEECCTTCHH-----H---HHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCHH--HHhhhhcCCeEEEEecCCCHH-----H---HHHHHH
Confidence 5889999999999999999999997 8999999752 2221 111222111 0 012345
Q ss_pred hcCCCcEEEEeCCCCCCCC-CC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 78 ACTGVNIAVMVGGFPRKEG-ME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~-~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
.+...|++|+.||+..... .+ .+..+..|+.....+ .+.+++. .+.+|++|+-... .+.|
T Consensus 75 ~~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~---~G~IVnisS~~~~---------~~~~ 142 (242)
T 4b79_A 75 ALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR---GGSILNIASMYST---------FGSA 142 (242)
T ss_dssp HCSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---CEEEEEECCGGGT---------SCCS
T ss_pred hcCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc---CCeEEEEeecccc---------CCCC
Confidence 5778999999999864221 12 344567776654444 4444432 3788888864321 1233
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..-.|+.++---.-|-+.+|..++ |..||
T Consensus 143 ~~~~Y~asKaav~~ltr~lA~Ela--~~gIr 171 (242)
T 4b79_A 143 DRPAYSASKGAIVQLTRSLACEYA--AERIR 171 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhh--hcCeE
Confidence 222456565555667777777765 45666
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00094 Score=64.56 Aligned_cols=99 Identities=8% Similarity=0.022 Sum_probs=64.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC---C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG---V 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~---a 82 (320)
.||+|+| .|.+|++++..|+..|+ +|.++|+++ ++++. +.....+ ...+..+.+..+++++ +
T Consensus 11 ~~IgvIG-lG~MG~~lA~~La~~G~-------~V~v~dr~~--~~~~~----l~~~~~~-~~gi~~~~s~~e~v~~l~~a 75 (497)
T 2p4q_A 11 ADFGLIG-LAVMGQNLILNAADHGF-------TVCAYNRTQ--SKVDH----FLANEAK-GKSIIGATSIEDFISKLKRP 75 (497)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS--HHHHH----HHHTTTT-TSSEECCSSHHHHHHTSCSS
T ss_pred CCEEEEe-eHHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHH----HHccccc-CCCeEEeCCHHHHHhcCCCC
Confidence 5899999 69999999999999997 799999974 33332 2220000 0235555567676665 9
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
|+||++...+ +.++++++.+..+..++.++|..+|..
T Consensus 76 DvVil~Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~ 112 (497)
T 2p4q_A 76 RKVMLLVKAG---------------APVDALINQIVPLLEKGDIIIDGGNSH 112 (497)
T ss_dssp CEEEECCCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CEEEEEcCCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 9999985321 123444556666554556677777643
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00033 Score=64.40 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=57.4
Q ss_pred CCCCC--CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh
Q 020875 1 MAKEP--VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~--~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (320)
|+.++ +||+|+| .|.+|..++..|...|+ +|.++|+++ +.++ .+.++ . +....+..++
T Consensus 2 m~~~~~~~kIgIIG-~G~mG~slA~~L~~~G~-------~V~~~dr~~--~~~~-~a~~~---G------~~~~~~~~e~ 61 (341)
T 3ktd_A 2 MTTKDISRPVCILG-LGLIGGSLLRDLHAANH-------SVFGYNRSR--SGAK-SAVDE---G------FDVSADLEAT 61 (341)
T ss_dssp ----CCSSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSCH--HHHH-HHHHT---T------CCEESCHHHH
T ss_pred CCccCCCCEEEEEe-ecHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH-HHHHc---C------CeeeCCHHHH
Confidence 55543 7999999 69999999999999886 799999863 2222 11111 1 1223455555
Q ss_pred cC----CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 79 CT----GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 79 l~----~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
++ ++|+||++.. . ..+.++++.+..+. |+++++.+++
T Consensus 62 ~~~a~~~aDlVilavP--~--------------~~~~~vl~~l~~~~-~~~iv~Dv~S 102 (341)
T 3ktd_A 62 LQRAAAEDALIVLAVP--M--------------TAIDSLLDAVHTHA-PNNGFTDVVS 102 (341)
T ss_dssp HHHHHHTTCEEEECSC--H--------------HHHHHHHHHHHHHC-TTCCEEECCS
T ss_pred HHhcccCCCEEEEeCC--H--------------HHHHHHHHHHHccC-CCCEEEEcCC
Confidence 54 5799999752 0 12334445555553 6666665553
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00031 Score=60.13 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
.+|||+|+| +|.+|+.++..|...|+ +|.++|+++ ++++ .+.+. .+... +..++++++|
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~-------~V~~~~r~~--~~~~----~~~~~------g~~~~-~~~~~~~~~D 85 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGF-------KVVVGSRNP--KRTA----RLFPS------AAQVT-FQEEAVSSPE 85 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESSH--HHHH----HHSBT------TSEEE-EHHHHTTSCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH----HHHHc------CCcee-cHHHHHhCCC
Confidence 457999999 79999999999998886 789999863 2222 22221 12222 5678889999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+||++..
T Consensus 86 vVi~av~ 92 (215)
T 2vns_A 86 VIFVAVF 92 (215)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999864
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00029 Score=62.74 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=49.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (320)
|.+++|||+|+|++|++|+.++..+.+. ++ +++ ++|++++ +..+ .|+..........+...+++.+.
T Consensus 1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~-------elva~~d~~~~--~~~g--~d~~~~~g~~~~~v~~~~dl~~~ 69 (273)
T 1dih_A 1 MHDANIRVAIAGAGGRMGRQLIQAALALEGV-------QLGAALEREGS--SLLG--SDAGELAGAGKTGVTVQSSLDAV 69 (273)
T ss_dssp -CCCBEEEEETTTTSHHHHHHHHHHHHSTTE-------ECCCEECCTTC--TTCS--CCTTCSSSSSCCSCCEESCSTTT
T ss_pred CCCCCcEEEEECCCCHHHHHHHHHHHhCCCC-------EEEEEEecCch--hhhh--hhHHHHcCCCcCCceecCCHHHH
Confidence 7888899999998899999999887754 43 665 7887532 1111 12211110011234455677777
Q ss_pred cCCCcEEEEeC
Q 020875 79 CTGVNIAVMVG 89 (320)
Q Consensus 79 l~~aDvVi~~a 89 (320)
++++|+||..+
T Consensus 70 l~~~DvVIDft 80 (273)
T 1dih_A 70 KDDFDVFIDFT 80 (273)
T ss_dssp TTSCSEEEECS
T ss_pred hcCCCEEEEcC
Confidence 88999999554
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00059 Score=61.60 Aligned_cols=66 Identities=21% Similarity=0.403 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
.|+||++|| .|.+|++++..|+..|+ +|..+|+++ ++++ .+.+. ..+...+..++.+++|
T Consensus 2 ~M~kIgfIG-lG~MG~~mA~~L~~~G~-------~v~v~dr~~--~~~~----~l~~~------Ga~~a~s~~e~~~~~d 61 (300)
T 3obb_A 2 HMKQIAFIG-LGHMGAPMATNLLKAGY-------LLNVFDLVQ--SAVD----GLVAA------GASAARSARDAVQGAD 61 (300)
T ss_dssp -CCEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSSH--HHHH----HHHHT------TCEECSSHHHHHTTCS
T ss_pred CcCEEEEee-ehHHHHHHHHHHHhCCC-------eEEEEcCCH--HHHH----HHHHc------CCEEcCCHHHHHhcCC
Confidence 466999999 89999999999999998 899999873 3333 23222 1233457888899999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||.+-
T Consensus 62 vv~~~l 67 (300)
T 3obb_A 62 VVISML 67 (300)
T ss_dssp EEEECC
T ss_pred ceeecC
Confidence 999874
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00015 Score=65.24 Aligned_cols=99 Identities=9% Similarity=0.121 Sum_probs=61.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-CCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-TGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al-~~aDv 84 (320)
|||+|+| +|.+|+.++..|.+.|+ +|.++++++ +.++ +....... ......+..+++ .++|+
T Consensus 3 mkI~iiG-aGa~G~~~a~~L~~~g~-------~V~~~~r~~--~~~~-----~~~~~g~~--~~~~~~~~~~~~~~~~D~ 65 (294)
T 3g17_A 3 LSVAIIG-PGAVGTTIAYELQQSLP-------HTTLIGRHA--KTIT-----YYTVPHAP--AQDIVVKGYEDVTNTFDV 65 (294)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHHCT-------TCEEEESSC--EEEE-----EESSTTSC--CEEEEEEEGGGCCSCEEE
T ss_pred cEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEEecc--CcEE-----EEecCCee--ccceecCchHhcCCCCCE
Confidence 6899999 59999999999998886 689999874 2222 11111111 112222344555 89999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhh
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~ 137 (320)
||++.-. . .+.++++.++.+-.++..+|.+.|-++..
T Consensus 66 vilavk~----~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~ 102 (294)
T 3g17_A 66 IIIAVKT----H------------QLDAVIPHLTYLAHEDTLIILAQNGYGQL 102 (294)
T ss_dssp EEECSCG----G------------GHHHHGGGHHHHEEEEEEEEECCSSCCCG
T ss_pred EEEeCCc----c------------CHHHHHHHHHHhhCCCCEEEEeccCcccH
Confidence 9997521 1 12334444554433556778888877653
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00026 Score=68.39 Aligned_cols=119 Identities=13% Similarity=0.103 Sum_probs=74.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc-cchhHHHHHHHhcccCC---CCcceEEeCChhhhcC-
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA-AEALNGVKMELVDAAFP---LLKGVVATTDAVEACT- 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~-~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al~- 80 (320)
.+++||||+|.+|.+++..|+++|.. .|++.+++.. .+.+.....++...... ...++....+..+.++
T Consensus 240 ~~vLITGgsgGIG~alA~~La~~Ga~------~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~ 313 (496)
T 3mje_A 240 GSVLVTGGTGGIGGRVARRLAEQGAA------HLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAE 313 (496)
T ss_dssp SEEEEETCSSHHHHHHHHHHHHTTCS------EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHHHCCCc------EEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 68999999999999999999998862 6888887531 12222233334322111 0112222122222232
Q ss_pred -----CCcEEEEeCCCC-CCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 81 -----GVNIAVMVGGFP-RKE---GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 81 -----~aDvVi~~ag~~-~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
..|+|||+||+. ... ..+ ....+..|+.....+.+.+.+.. . ..+|++|+
T Consensus 314 i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~-~-~~iV~~SS 375 (496)
T 3mje_A 314 LPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLD-L-DAFVLFSS 375 (496)
T ss_dssp CCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSC-C-SEEEEEEE
T ss_pred HHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccC-C-CEEEEEeC
Confidence 479999999986 221 122 23567899999999999988764 3 46777775
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0003 Score=66.07 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=58.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEe---cCCccchhHHHHHHHhccc------CC-C-----Ccc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLD---IPPAAEALNGVKMELVDAA------FP-L-----LKG 68 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D---~~~~~~~~~~~~~dl~~~~------~~-~-----~~~ 68 (320)
+|||+|+| +|.+|..++..|+. .|+ +|.++| +++ +.++.. +.... .. . ...
T Consensus 2 ~mkI~ViG-aG~~G~~~a~~La~~~G~-------~V~~~~~~~r~~--~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~ 68 (404)
T 3c7a_A 2 TVKVCVCG-GGNGAHTLSGLAASRDGV-------EVRVLTLFADEA--ERWTKA---LGADELTVIVNEKDGTQTEVKSR 68 (404)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTSTTE-------EEEEECCSTTHH--HHHHHH---HTTSCEEEEEECSSSCEEEEEEC
T ss_pred CceEEEEC-CCHHHHHHHHHHHhCCCC-------EEEEEeCCCCcH--HHHHHH---HhhccceeeeecCCCccceeecc
Confidence 47999999 59999999999987 476 899999 431 222211 11110 00 0 012
Q ss_pred e-EEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEE
Q 020875 69 V-VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLV 129 (320)
Q Consensus 69 v-~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv 129 (320)
+ ..+++..++++++|+||++.... ...++++.+..+..++..++.
T Consensus 69 ~~~~~~~~~~a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~ 114 (404)
T 3c7a_A 69 PKVITKDPEIAISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG 114 (404)
T ss_dssp CSEEESCHHHHHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred ceEEeCCHHHHhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence 2 25567778899999999986321 124566666666545554444
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0005 Score=66.95 Aligned_cols=123 Identities=17% Similarity=0.117 Sum_probs=73.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE-ecCCcc-----------chhHHHHHHHhcccCC---CCcceE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML-DIPPAA-----------EALNGVKMELVDAAFP---LLKGVV 70 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~-D~~~~~-----------~~~~~~~~dl~~~~~~---~~~~v~ 70 (320)
..++||||+|.+|.+++..|+++|.. .++|. +++... +.++....++...... ...++.
T Consensus 252 ~~vLITGgsgGIG~~lA~~La~~G~~------~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvt 325 (525)
T 3qp9_A 252 GTVLVTGAEEPAAAEAARRLARDGAG------HLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLT 325 (525)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCC------EEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTT
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCC------EEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCC
Confidence 58899999999999999999998862 57787 776311 2223333334322110 011222
Q ss_pred EeCChhhhcC------CCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHHHHHHHHhhhcCC---CeEEEEEcCcc
Q 020875 71 ATTDAVEACT------GVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEQHAAP---NCKVLVVANPA 134 (320)
Q Consensus 71 ~~~~~~~al~------~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~~i~~~i~~~~~~---~~~viv~snP~ 134 (320)
...+..+.++ ..|+|||+||+.... ..+ -...+..|+.....+.+.+...... ...+|++|+-.
T Consensus 326 d~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a 404 (525)
T 3qp9_A 326 DAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVA 404 (525)
T ss_dssp SHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGG
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHH
Confidence 2222333333 469999999985421 122 2346788999999999888776311 35677777543
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00067 Score=62.22 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH-HHHhcccCCCCcceEEeC--Chhhhc-
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK-MELVDAAFPLLKGVVATT--DAVEAC- 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~-~dl~~~~~~~~~~v~~~~--~~~~al- 79 (320)
.|+||+|+||+|.+|..++..|.+...+ ++..+..++. .+..|.. .++ +.......++.... +. +++
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~------el~~l~s~~~-~~saGk~~~~~-~p~~~~~~~~~v~~~~~~-~~~~ 73 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPHM------NITALTVSAQ-SNDAGKLISDL-HPQLKGIVELPLQPMSDI-SEFS 73 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTTE------EEEEEEEETT-CTTTTSBHHHH-CGGGTTTCCCBEEEESSG-GGTC
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCCC------cEEEEEecCc-hhhcCCchHHh-CccccCccceeEeccCCH-HHHh
Confidence 3579999999999999999988875432 7776654320 0112221 111 11100001222221 33 345
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
+++|+||.+.+. ...+++++.+.+.+ +++|-.|.+-
T Consensus 74 ~~~Dvvf~a~p~----------------~~s~~~~~~~~~~g---~~vIDlSa~f 109 (337)
T 3dr3_A 74 PGVDVVFLATAH----------------EVSHDLAPQFLEAG---CVVFDLSGAF 109 (337)
T ss_dssp TTCSEEEECSCH----------------HHHHHHHHHHHHTT---CEEEECSSTT
T ss_pred cCCCEEEECCCh----------------HHHHHHHHHHHHCC---CEEEEcCCcc
Confidence 899999998641 22355666665544 6777777663
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.001 Score=61.00 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=46.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.+||+|+| +|.+|.+++..|...|+ +|+++|++.. +....+.+ . .+... +..+++++||+
T Consensus 16 ~~~I~IIG-~G~mG~alA~~L~~~G~-------~V~~~~~~~~--~~~~~a~~---~------G~~~~-~~~e~~~~aDv 75 (338)
T 1np3_A 16 GKKVAIIG-YGSQGHAHACNLKDSGV-------DVTVGLRSGS--ATVAKAEA---H------GLKVA-DVKTAVAAADV 75 (338)
T ss_dssp TSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECCTTC--HHHHHHHH---T------TCEEE-CHHHHHHTCSE
T ss_pred CCEEEEEC-chHHHHHHHHHHHHCcC-------EEEEEECChH--HHHHHHHH---C------CCEEc-cHHHHHhcCCE
Confidence 47999999 69999999999998886 7889998642 21111111 1 12233 66788899999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 76 Vilav 80 (338)
T 1np3_A 76 VMILT 80 (338)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99985
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0011 Score=62.48 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-CcceEEeCChhhh-cCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEA-CTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~a-l~~ 81 (320)
+.++|.|+| .|.+|+.++..|...|+ +++++|.++ ++++. +.+...+. .++.+....+.++ +.+
T Consensus 3 ~~~~viIiG-~Gr~G~~va~~L~~~g~-------~vvvId~d~--~~v~~----~~~~g~~vi~GDat~~~~L~~agi~~ 68 (413)
T 3l9w_A 3 HGMRVIIAG-FGRFGQITGRLLLSSGV-------KMVVLDHDP--DHIET----LRKFGMKVFYGDATRMDLLESAGAAK 68 (413)
T ss_dssp -CCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECCH--HHHHH----HHHTTCCCEESCTTCHHHHHHTTTTT
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-------CEEEEECCH--HHHHH----HHhCCCeEEEcCCCCHHHHHhcCCCc
Confidence 457899999 59999999999999887 799999874 33332 22111111 1121111123333 689
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC-cchhhHHHHHHHCCCCCCCcEEEeehhh
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN-PANTNALILKEFAPSIPAKNITCLTRLD 160 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn-P~~~~~~~~~~~~~~~~~~~i~~~t~ld 160 (320)
||+||++.+. -..| ..++..+++.. |+..+|.-++ +.+ ...+.+ -|. ..++--+..-
T Consensus 69 A~~viv~~~~-----------~~~n----~~i~~~ar~~~-p~~~Iiara~~~~~--~~~L~~--~Ga--d~Vi~~~~~~ 126 (413)
T 3l9w_A 69 AEVLINAIDD-----------PQTN----LQLTEMVKEHF-PHLQIIARARDVDH--YIRLRQ--AGV--EKPERETFEG 126 (413)
T ss_dssp CSEEEECCSS-----------HHHH----HHHHHHHHHHC-TTCEEEEEESSHHH--HHHHHH--TTC--SSCEETTHHH
T ss_pred cCEEEECCCC-----------hHHH----HHHHHHHHHhC-CCCeEEEEECCHHH--HHHHHH--CCC--CEEECccHHH
Confidence 9999998531 1223 34566677776 7766666554 432 222333 132 2344444444
Q ss_pred HHHHHHHHHHHcCCCCCCee
Q 020875 161 HNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 161 ~~r~~~~~a~~l~v~~~~v~ 180 (320)
+.++-..+-..+|+++..+.
T Consensus 127 a~~la~~~L~~lg~~~~~~~ 146 (413)
T 3l9w_A 127 ALKTGRLALESLGLGPYEAR 146 (413)
T ss_dssp HHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHH
Confidence 45555555566666665543
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00063 Score=61.31 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=45.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
.||++|| .|.+|++++..|++.|+ +|+.+|+++ ++++ ++.+. ......+..++++++|+|
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~------G~~~~~s~~e~~~~~dvv 65 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGY-------ELVVWNRTA--SKAE----PLTKL------GATVVENAIDAITPGGIV 65 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEC---------C----TTTTT------TCEECSSGGGGCCTTCEE
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHH----HHHHc------CCeEeCCHHHHHhcCCce
Confidence 4899999 89999999999999998 899999874 3222 12211 234445778899999999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|.+.
T Consensus 66 i~~l 69 (297)
T 4gbj_A 66 FSVL 69 (297)
T ss_dssp EECC
T ss_pred eeec
Confidence 9874
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0007 Score=57.83 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=45.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh-cCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA-CTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a-l~~aDv 84 (320)
|||+|+| +|.+|++++..|...|+ +++++|+++ ++++...... +.. ....+.+....+.++ ++++|+
T Consensus 1 M~iiIiG-~G~~G~~la~~L~~~g~-------~v~vid~~~--~~~~~l~~~~-~~~-~i~gd~~~~~~l~~a~i~~ad~ 68 (218)
T 3l4b_C 1 MKVIIIG-GETTAYYLARSMLSRKY-------GVVIINKDR--ELCEEFAKKL-KAT-IIHGDGSHKEILRDAEVSKNDV 68 (218)
T ss_dssp CCEEEEC-CHHHHHHHHHHHHHTTC-------CEEEEESCH--HHHHHHHHHS-SSE-EEESCTTSHHHHHHHTCCTTCE
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHc-CCe-EEEcCCCCHHHHHhcCcccCCE
Confidence 6899999 59999999999999887 799999864 3333211111 100 000111111123333 789999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
||.+.+
T Consensus 69 vi~~~~ 74 (218)
T 3l4b_C 69 VVILTP 74 (218)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998753
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00086 Score=61.62 Aligned_cols=96 Identities=22% Similarity=0.341 Sum_probs=53.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
+|||+|+||+|.+|+.++..|.++++- ..+++++....+..+ ...+.. .++....-..++++++|+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~----~~elv~i~s~~~~g~----~~~~~g------~~i~~~~~~~~~~~~~Dv 71 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFP----LHRLHLLASAESAGQ----RMGFAE------SSLRVGDVDSFDFSSVGL 71 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCC----CSCEEEEECTTTTTC----EEEETT------EEEECEEGGGCCGGGCSE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC----cEEEEEEecCCCCCC----ccccCC------cceEEecCCHHHhcCCCE
Confidence 479999999999999999998866542 136665542211111 000110 112211111234679999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
||.+.|. ...+++++...+.+ +++|..|.|
T Consensus 72 V~~a~g~----------------~~s~~~a~~~~~aG---~kvId~Sa~ 101 (340)
T 2hjs_A 72 AFFAAAA----------------EVSRAHAERARAAG---CSVIDLSGA 101 (340)
T ss_dssp EEECSCH----------------HHHHHHHHHHHHTT---CEEEETTCT
T ss_pred EEEcCCc----------------HHHHHHHHHHHHCC---CEEEEeCCC
Confidence 9998651 12345566665544 556666655
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00083 Score=53.26 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=29.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+|+|+| .|.+|+.++..|...|+ +++++|+++
T Consensus 8 ~~viIiG-~G~~G~~la~~L~~~g~-------~v~vid~~~ 40 (140)
T 3fwz_A 8 NHALLVG-YGRVGSLLGEKLLASDI-------PLVVIETSR 40 (140)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESCH
T ss_pred CCEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEECCH
Confidence 5899999 59999999999999887 799999874
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0012 Score=61.12 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=44.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
++||+|+||+|++|..++..|.+.++- ..++.++...++ .|....+.. .++....-..++++++|+
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p----~~el~~~as~~s----aG~~~~~~~------~~~~~~~~~~~~~~~~Dv 67 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLP----IDKIRYLASARS----AGKSLKFKD------QDITIEETTETAFEGVDI 67 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCC----EEEEEEEECTTT----TTCEEEETT------EEEEEEECCTTTTTTCSE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCC----cEEEEEEEcccc----CCCcceecC------CCceEeeCCHHHhcCCCE
Confidence 469999999999999999988876431 237777764321 222211111 122322112345789999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
||.+.+
T Consensus 68 vf~a~~ 73 (366)
T 3pwk_A 68 ALFSAG 73 (366)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 999865
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0021 Score=63.66 Aligned_cols=121 Identities=21% Similarity=0.188 Sum_probs=70.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC-------ccchhHHHHHHHhcccCCCCcceEEeCC---
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP-------AAEALNGVKMELVDAAFPLLKGVVATTD--- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~-------~~~~~~~~~~dl~~~~~~~~~~v~~~~~--- 74 (320)
.+.++||||++-+|.+++..|+++|. .|++.|++. +.+.++....++.........++....+
T Consensus 8 gkvalVTGas~GIG~a~A~~la~~Ga-------~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~ 80 (604)
T 2et6_A 8 DKVVIITGAGGGLGKYYSLEFAKLGA-------KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDK 80 (604)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHcCC-------EEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHH
Confidence 35788999999999999999999997 799988753 1123333333332211000011111111
Q ss_pred ----hhhhcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 75 ----AVEACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 75 ----~~~al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
..+.+-..|++|+.||+.+.. ..+ .+..+..|+... +..++.+++.. .+++|++|+..
T Consensus 81 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~--~G~IVnisS~a 152 (604)
T 2et6_A 81 IVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQK--YGRIVNTSSPA 152 (604)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCHH
Confidence 123345789999999975421 123 334567776554 44555565543 47888888654
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=61.28 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHH-HHh----cccCC-CCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-ELV----DAAFP-LLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~-dl~----~~~~~-~~~~v~~~~~~~~ 77 (320)
+++||+|+||+|++|..+...|.+... .++..+...++ .|... +.. +...+ ...+........+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S~~s----aGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~ 75 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAGKGS----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK 75 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEESTT----TTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEECchh----cCCChhHhcccccccccccccccceEEeCCHH
Confidence 457999999999999999997766543 37776653321 22211 110 00000 0012222211234
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
.+.++|+||.+.+.. . .+++++.+.+.+ +++|-.|.+
T Consensus 76 ~~~~vDvvf~a~p~~----~------------s~~~a~~~~~~G---~~vIDlSa~ 112 (359)
T 4dpk_A 76 LMDDVDIIFSPLPQG----A------------AGPVEEQFAKEG---FPVISNSPD 112 (359)
T ss_dssp GCTTCCEEEECCCTT----T------------HHHHHHHHHHTT---CEEEECSST
T ss_pred HhcCCCEEEECCChH----H------------HHHHHHHHHHCC---CEEEEcCCC
Confidence 578999999986521 1 234555554443 567777765
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=61.28 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHH-HHh----cccCC-CCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-ELV----DAAFP-LLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~-dl~----~~~~~-~~~~v~~~~~~~~ 77 (320)
+++||+|+||+|++|..+...|.+... .++..+...++ .|... +.. +...+ ...+........+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S~~s----aGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~ 75 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAGKGS----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK 75 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEESTT----TTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEECchh----cCCChhHhcccccccccccccccceEEeCCHH
Confidence 457999999999999999997766543 37776653321 22211 110 00000 0012222211234
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
.+.++|+||.+.+.. . .+++++.+.+.+ +++|-.|.+
T Consensus 76 ~~~~vDvvf~a~p~~----~------------s~~~a~~~~~~G---~~vIDlSa~ 112 (359)
T 4dpl_A 76 LMDDVDIIFSPLPQG----A------------AGPVEEQFAKEG---FPVISNSPD 112 (359)
T ss_dssp GCTTCCEEEECCCTT----T------------HHHHHHHHHHTT---CEEEECSST
T ss_pred HhcCCCEEEECCChH----H------------HHHHHHHHHHCC---CEEEEcCCC
Confidence 578999999986521 1 234555554443 567777765
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00043 Score=61.91 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=47.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.+|+.++..|...|+ +|.++|+++ ++++ .+... .+....+..++++++|+|
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g~-------~V~~~~~~~--~~~~----~~~~~------g~~~~~~~~~~~~~~Dvv 60 (296)
T 2gf2_A 1 MPVGFIG-LGNMGNPMAKNLMKHGY-------PLIIYDVFP--DACK----EFQDA------GEQVVSSPADVAEKADRI 60 (296)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHHTTC-------CEEEECSST--HHHH----HHHTT------TCEECSSHHHHHHHCSEE
T ss_pred CeEEEEe-ccHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH----HHHHc------CCeecCCHHHHHhcCCEE
Confidence 5899999 69999999999998886 799999874 3332 12221 234445677778899999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 61 i~~v 64 (296)
T 2gf2_A 61 ITML 64 (296)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9975
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0009 Score=61.61 Aligned_cols=99 Identities=9% Similarity=0.069 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+++||+|+||+|.+|..++..|.+... .+++.+....+ .+...+-.+.......++... +.. ++.++|
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~------~elv~v~s~~~----~g~~~~~~~~~~~g~~~~~~~-~~~-~~~~vD 70 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHPY------LEVKQVTSRRF----AGEPVHFVHPNLRGRTNLKFV-PPE-KLEPAD 70 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCTT------EEEEEEBCSTT----TTSBGGGTCGGGTTTCCCBCB-CGG-GCCCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCCC------cEEEEEECchh----hCchhHHhCchhcCccccccc-chh-HhcCCC
Confidence 357999999999999999998886644 37766544321 111111001110000122222 222 468999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+||++.+.. ..+++++.+.+.+ +++|..|++
T Consensus 71 vV~~a~g~~----------------~s~~~a~~~~~aG---~~VId~Sa~ 101 (345)
T 2ozp_A 71 ILVLALPHG----------------VFAREFDRYSALA---PVLVDLSAD 101 (345)
T ss_dssp EEEECCCTT----------------HHHHTHHHHHTTC---SEEEECSST
T ss_pred EEEEcCCcH----------------HHHHHHHHHHHCC---CEEEEcCcc
Confidence 999987532 1244555555544 566666664
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00026 Score=66.69 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=49.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcC-CCCCCeEEEEEecCCccchhHHHHHHHhccc---C-CCCcceEEeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVML-GTDQPVILHMLDIPPAAEALNGVKMELVDAA---F-PLLKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~-~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~---~-~~~~~v~~~~~~~~al 79 (320)
|+||+|+|| |++|+.++..|++.+.. . +|.+.|++. ++++....++.... . ....++....++.+.+
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~-----~V~v~~r~~--~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l 72 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFS-----HITLASRTL--SKCQEIAQSIKAKGYGEIDITTVDADSIEELVALI 72 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCC-----EEEEEESCH--HHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCce-----EEEEEECCH--HHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHH
Confidence 369999996 99999999999987631 2 799999874 45554444443210 0 0011121122455666
Q ss_pred CC--CcEEEEeCC
Q 020875 80 TG--VNIAVMVGG 90 (320)
Q Consensus 80 ~~--aDvVi~~ag 90 (320)
++ +|+||++++
T Consensus 73 ~~~~~DvVin~ag 85 (405)
T 4ina_A 73 NEVKPQIVLNIAL 85 (405)
T ss_dssp HHHCCSEEEECSC
T ss_pred HhhCCCEEEECCC
Confidence 66 899999986
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00051 Score=65.62 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=47.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
+++|+|+| +|++|++++..|++.|. +|++.|++. ++++.....+.... ....++....++.++++++|+
T Consensus 3 ~k~VlViG-aG~iG~~ia~~L~~~G~-------~V~v~~R~~--~~a~~la~~~~~~~-~~~~Dv~d~~~l~~~l~~~Dv 71 (450)
T 1ff9_A 3 TKSVLMLG-SGFVTRPTLDVLTDSGI-------KVTVACRTL--ESAKKLSAGVQHST-PISLDVNDDAALDAEVAKHDL 71 (450)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHTTTC-------EEEEEESSH--HHHHHTTTTCTTEE-EEECCTTCHHHHHHHHTTSSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCcC-------EEEEEECCH--HHHHHHHHhcCCce-EEEeecCCHHHHHHHHcCCcE
Confidence 46999999 79999999999998775 799999863 33322111110000 000011111234567889999
Q ss_pred EEEeCCCC
Q 020875 85 AVMVGGFP 92 (320)
Q Consensus 85 Vi~~ag~~ 92 (320)
||++++..
T Consensus 72 VIn~a~~~ 79 (450)
T 1ff9_A 72 VISLIPYT 79 (450)
T ss_dssp EEECCC--
T ss_pred EEECCccc
Confidence 99998753
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.002 Score=59.39 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML 42 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~ 42 (320)
+++||+|+||+|.+|..++..|.+... .+++.+
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~------~elvai 35 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPY------LELVKV 35 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSS------EEEEEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCC------cEEEEE
Confidence 468999999999999999998876543 377666
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.001 Score=61.98 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEE
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHML 42 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~ 42 (320)
+++||+|+||+|++|..+...|.+... .++..+
T Consensus 18 ~~~kVaIvGAtG~vG~ell~lL~~hp~------~el~~l 50 (381)
T 3hsk_A 18 SVKKAGVLGATGSVGQRFILLLSKHPE------FEIHAL 50 (381)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCSS------EEEEEE
T ss_pred CccEEEEECCCChHHHHHHHHHHcCCC------ceEEEe
Confidence 357999999999999999998877654 377544
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0011 Score=57.56 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEec
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI 44 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~ 44 (320)
|...+|||+|+| +|.+|.+++..|.+.|+ +|..+|+
T Consensus 2 ~~~~~mkI~IIG-~G~~G~sLA~~L~~~G~-------~V~~~~~ 37 (232)
T 3dfu_A 2 MQAPRLRVGIFD-DGSSTVNMAEKLDSVGH-------YVTVLHA 37 (232)
T ss_dssp -CCCCCEEEEEC-CSCCCSCHHHHHHHTTC-------EEEECSS
T ss_pred CCCCCcEEEEEe-eCHHHHHHHHHHHHCCC-------EEEEecC
Confidence 666779999999 69999999999999987 8988886
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00097 Score=58.54 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=44.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.+|+.++..|...|+ +|.++|+..+.+.++ .+.... +. .+..++++++|+|
T Consensus 1 M~I~iIG-~G~mG~~la~~l~~~g~-------~V~~~~~~~~~~~~~----~~~~~g------~~--~~~~~~~~~aDvv 60 (264)
T 1i36_A 1 LRVGFIG-FGEVAQTLASRLRSRGV-------EVVTSLEGRSPSTIE----RARTVG------VT--ETSEEDVYSCPVV 60 (264)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC-------EEEECCTTCCHHHHH----HHHHHT------CE--ECCHHHHHTSSEE
T ss_pred CeEEEEe-chHHHHHHHHHHHHCCC-------eEEEeCCccCHHHHH----HHHHCC------Cc--CCHHHHHhcCCEE
Confidence 5899999 69999999999998886 788887632222222 222111 11 3456778899999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 61 i~~v 64 (264)
T 1i36_A 61 ISAV 64 (264)
T ss_dssp EECS
T ss_pred EEEC
Confidence 9985
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0022 Score=58.75 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+++||+|+||+|.+|..++..|.++++- ..+++++....+. +....+.. .++....-..+.++++|
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p----~~elv~i~s~~~~----G~~~~~~~------~~i~~~~~~~~~~~~vD 67 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFP----VDELFLLASERSE----GKTYRFNG------KTVRVQNVEEFDWSQVH 67 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCC----EEEEEEEECTTTT----TCEEEETT------EEEEEEEGGGCCGGGCS
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCC----CEEEEEEECCCCC----CCceeecC------ceeEEecCChHHhcCCC
Confidence 4689999999999999999988876321 1367666532111 11111111 12222211123567899
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+||.+.|. ...+++++...+.+ +++|..|.+
T Consensus 68 vVf~a~g~----------------~~s~~~a~~~~~~G---~~vId~s~~ 98 (336)
T 2r00_A 68 IALFSAGG----------------ELSAKWAPIAAEAG---VVVIDNTSH 98 (336)
T ss_dssp EEEECSCH----------------HHHHHHHHHHHHTT---CEEEECSST
T ss_pred EEEECCCc----------------hHHHHHHHHHHHcC---CEEEEcCCc
Confidence 99998652 12355666666554 566666655
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0016 Score=60.46 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=43.0
Q ss_pred CEEEEEcCCChhHHHHHH-HHHhcCcCCCCCCeEEEEEecCCccchhHHHH-HHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVP-MIARGVMLGTDQPVILHMLDIPPAAEALNGVK-MELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~-~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~-~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
|||+|+||+|++|+.++. .|.++... ..++.++..+. .|.. .++... ...+...++ .+.++++|
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~----~~~l~~~ss~~-----aG~~~~~~~~~----~~~~~~~~~-~~~~~~~D 66 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTSQ-----IGVPAPNFGKD----AGMLHDAFD-IESLKQLD 66 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESSS-----TTSBCCCSSSC----CCBCEETTC-HHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCC----ceEEEEEeccc-----cCcCHHHhCCC----ceEEEecCC-hhHhccCC
Confidence 689999999999999998 66666531 13777775432 2221 112110 112222222 35579999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+||.+.|
T Consensus 67 vvf~a~~ 73 (370)
T 3pzr_A 67 AVITCQG 73 (370)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999865
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0016 Score=60.26 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=43.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC--cceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~al~~a 82 (320)
++||+|+||+|.+|..++..|.+... .+++.+....+. +...+-.+...... .++... + .+.++++
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~------~elvai~~~~~~----g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~~v 83 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPH------FQVTLMTADRKA----GQSMESVFPHLRAQKLPTLVSV-K-DADFSTV 83 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSS------EEEEEEBCSTTT----TSCHHHHCGGGTTSCCCCCBCG-G-GCCGGGC
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCC------cEEEEEeCchhc----CCCHHHhCchhcCcccccceec-c-hhHhcCC
Confidence 36999999999999999999887654 277666433211 11112111111000 122221 1 3445789
Q ss_pred cEEEEeCC
Q 020875 83 NIAVMVGG 90 (320)
Q Consensus 83 DvVi~~ag 90 (320)
|+||++.+
T Consensus 84 DvVf~atp 91 (359)
T 1xyg_A 84 DAVFCCLP 91 (359)
T ss_dssp SEEEECCC
T ss_pred CEEEEcCC
Confidence 99999875
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0013 Score=61.10 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=55.1
Q ss_pred CCEEEEEcCCChhHHHHHH-HHHhcCcCCCCCCeEEEEEecCCccchhHHHHH-HHhcccCCCCcceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVP-MIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-ELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~-~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~-dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
|+||+|+||+|++|+.++. .|.+.++. ..+++++..+. .|... .+.. ....+....+ .+.++++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~----~v~i~~~~~~s-----~G~~v~~~~g----~~i~~~~~~~-~~~~~~~ 66 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFD----AIRPVFFSTSQ-----LGQAAPSFGG----TTGTLQDAFD-LEALKAL 66 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGG----GSEEEEEESSS-----TTSBCCGGGT----CCCBCEETTC-HHHHHTC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCC----eEEEEEEEeCC-----CCCCccccCC----CceEEEecCC-hHHhcCC
Confidence 3699999999999999999 45444431 13777776531 12111 0110 0111222222 2446799
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
|+||.+.|. ...+++++...+.+ ++.++++||.+
T Consensus 67 DvVf~a~g~----------------~~s~~~a~~~~~~G---~k~vVID~ss~ 100 (367)
T 1t4b_A 67 DIIVTCQGG----------------DYTNEIYPKLRESG---WQGYWIDAASS 100 (367)
T ss_dssp SEEEECSCH----------------HHHHHHHHHHHHTT---CCCEEEECSST
T ss_pred CEEEECCCc----------------hhHHHHHHHHHHCC---CCEEEEcCChh
Confidence 999998751 23455666666554 33456666653
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0057 Score=55.56 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=50.9
Q ss_pred cCCCcEEEEeCCCCC---CCC--CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCC
Q 020875 79 CTGVNIAVMVGGFPR---KEG--ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA 150 (320)
Q Consensus 79 l~~aDvVi~~ag~~~---~~~--~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~ 150 (320)
+...|++|+.||+.. .+- .+ ....+..|+.....+.+.+..+-...+++|++|+.... .+.|.
T Consensus 111 ~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~---------~~~~~ 181 (329)
T 3lt0_A 111 YGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMKPQSSIISLTYHASQ---------KVVPG 181 (329)
T ss_dssp HCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT---------SCCTT
T ss_pred cCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeCcccc---------CCCCc
Confidence 346899999998631 111 12 34567889888888888776653233678888765422 12332
Q ss_pred Cc-EEEeehhhHHHHHHHHHHHc
Q 020875 151 KN-ITCLTRLDHNRALGQISEKL 172 (320)
Q Consensus 151 ~~-i~~~t~ld~~r~~~~~a~~l 172 (320)
.- .|+.++.-...+-+.++..+
T Consensus 182 ~~~~Y~asKaal~~~~~~la~el 204 (329)
T 3lt0_A 182 YGGGMSSAKAALESDTRVLAYHL 204 (329)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 22 45666555555656666655
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0031 Score=57.91 Aligned_cols=71 Identities=15% Similarity=0.347 Sum_probs=44.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
+||+|+||+|++|..+...|.++.+ . ..++.++...++ .|+...+.. .++....-..+.++++|+|
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~f-p---~~el~~~~s~~~----aG~~~~~~~------~~~~~~~~~~~~~~~~Dvv 67 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDF-P---ASAVRFFASARS----QGRKLAFRG------QEIEVEDAETADPSGLDIA 67 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTC-C---EEEEEEEECTTT----SSCEEEETT------EEEEEEETTTSCCTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-C---ceEEEEEECccc----CCCceeecC------CceEEEeCCHHHhccCCEE
Confidence 6999999999999999998887642 1 137777764321 222211111 1233322223567899999
Q ss_pred EEeCC
Q 020875 86 VMVGG 90 (320)
Q Consensus 86 i~~ag 90 (320)
|.+.+
T Consensus 68 f~a~~ 72 (344)
T 3tz6_A 68 LFSAG 72 (344)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 99865
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0019 Score=57.36 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
+++||+|+||+|.+|+.++..+.+..-+ +++ .+|++.. ...+ .|+.+... ....+..+.++.+.++++
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~------eLv~~~d~~~~--~~~G--~d~gel~g-~~~gv~v~~dl~~ll~~~ 74 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPDA------TLVGALDRTGS--PQLG--QDAGAFLG-KQTGVALTDDIERVCAEA 74 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTTE------EEEEEBCCTTC--TTTT--SBTTTTTT-CCCSCBCBCCHHHHHHHC
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCCC------EEEEEEEecCc--cccc--ccHHHHhC-CCCCceecCCHHHHhcCC
Confidence 4689999999999999999988865432 665 5687531 1111 12221110 112455566788888899
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+||...
T Consensus 75 DVVIDfT 81 (272)
T 4f3y_A 75 DYLIDFT 81 (272)
T ss_dssp SEEEECS
T ss_pred CEEEEcC
Confidence 9998864
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0024 Score=58.45 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=46.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.+||+|+| .|.+|+.++..|...|+ +|..+|++.. ... .+....++.+.++++|+
T Consensus 164 g~~vgIIG-~G~iG~~vA~~l~~~G~-------~V~~~dr~~~--~~~---------------g~~~~~~l~ell~~aDv 218 (333)
T 3ba1_A 164 GKRVGIIG-LGRIGLAVAERAEAFDC-------PISYFSRSKK--PNT---------------NYTYYGSVVELASNSDI 218 (333)
T ss_dssp TCCEEEEC-CSHHHHHHHHHHHTTTC-------CEEEECSSCC--TTC---------------CSEEESCHHHHHHTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEECCCch--hcc---------------CceecCCHHHHHhcCCE
Confidence 47999999 69999999999998776 7999998642 111 11223467788999999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
|+++..
T Consensus 219 Vil~vP 224 (333)
T 3ba1_A 219 LVVACP 224 (333)
T ss_dssp EEECSC
T ss_pred EEEecC
Confidence 999864
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0017 Score=60.38 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCChhHHHHHH-HHHhcCcCCCCCCeEEEEEecCCccchhHHHH-HHHhcccCCCCcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVP-MIARGVMLGTDQPVILHMLDIPPAAEALNGVK-MELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~-~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~-~dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
.++||+|+||+|++|+-++. .|.++.+. ..++.++..+. .|.. .++... ...+...++ .+.+++
T Consensus 3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~----~~~l~~~ss~~-----aG~~~~~~~~~----~~~v~~~~~-~~~~~~ 68 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFD----LIEPVFFSTSN-----AGGKAPSFAKN----ETTLKDATS-IDDLKK 68 (377)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTGGG----GSEEEEEESSC-----TTSBCCTTCCS----CCBCEETTC-HHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCC----ceEEEEEechh-----cCCCHHHcCCC----ceEEEeCCC-hhHhcC
Confidence 46899999999999999998 66666531 13777775431 1211 122111 011222122 345789
Q ss_pred CcEEEEeCC
Q 020875 82 VNIAVMVGG 90 (320)
Q Consensus 82 aDvVi~~ag 90 (320)
+|+||.+.+
T Consensus 69 vDvvf~a~~ 77 (377)
T 3uw3_A 69 CDVIITCQG 77 (377)
T ss_dssp CSEEEECSC
T ss_pred CCEEEECCC
Confidence 999999865
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.003 Score=57.18 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
..++|+|+| +|.+|..++..|... ++ .+|.++|+++ ++++.....+.. ++....+..++++++
T Consensus 134 ~~~~igiIG-~G~~g~~~a~~l~~~~g~------~~V~v~dr~~--~~~~~l~~~~~~-------~~~~~~~~~e~v~~a 197 (312)
T 2i99_A 134 SSEVLCILG-AGVQAYSHYEIFTEQFSF------KEVRIWNRTK--ENAEKFADTVQG-------EVRVCSSVQEAVAGA 197 (312)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHCCC------SEEEEECSSH--HHHHHHHHHSSS-------CCEECSSHHHHHTTC
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHhCCC------cEEEEEcCCH--HHHHHHHHHhhC-------CeEEeCCHHHHHhcC
Confidence 467999999 699999999988765 54 2799999864 444332222110 244456788889999
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+||.+.
T Consensus 198 DiVi~at 204 (312)
T 2i99_A 198 DVIITVT 204 (312)
T ss_dssp SEEEECC
T ss_pred CEEEEEe
Confidence 9999875
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0055 Score=60.59 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=87.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcce-EEe----CChhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGV-VAT----TDAVE 77 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v-~~~----~~~~~ 77 (320)
+.++||||++-+|.+++..|++.|. .|++.|+... +....++..... ....++ ... ....+
T Consensus 323 kvalVTGas~GIG~a~A~~la~~Ga-------~Vv~~~~~~~----~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~ 391 (604)
T 2et6_A 323 KVVLITGAGAGLGKEYAKWFAKYGA-------KVVVNDFKDA----TKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVID 391 (604)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC-------EEEEECSSCC----HHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH
T ss_pred CeEEEECcchHHHHHHHHHHHHCCC-------EEEEEeCccH----HHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHH
Confidence 4688999999999999999999997 7889886421 212223322110 011122 000 01122
Q ss_pred hcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 78 ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
.+-..|++|+.||+.... ..+ .+..+..|+.... .+++.+++. ..+++|++|+.... .+
T Consensus 392 ~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~IVnisS~ag~---------~~ 460 (604)
T 2et6_A 392 KYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEK--QFGRIINITSTSGI---------YG 460 (604)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHH---------SC
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECChhhc---------cC
Confidence 345789999999975421 223 3345677766544 445555443 34788888864421 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+..-.|+.++.--..|-+.+|..+. +..|+.
T Consensus 461 ~~~~~~Y~asKaal~~lt~~la~El~--~~gIrV 492 (604)
T 2et6_A 461 NFGQANYSSSKAGILGLSKTMAIEGA--KNNIKV 492 (604)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 22222466666666667777777764 455663
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0046 Score=56.67 Aligned_cols=61 Identities=20% Similarity=0.163 Sum_probs=46.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.+|+.++..|...|+ +|..+|+++. ... ......++.+.+++||+
T Consensus 171 gktiGIIG-lG~IG~~vA~~l~~~G~-------~V~~~dr~~~--~~~---------------~~~~~~sl~ell~~aDv 225 (340)
T 4dgs_A 171 GKRIGVLG-LGQIGRALASRAEAFGM-------SVRYWNRSTL--SGV---------------DWIAHQSPVDLARDSDV 225 (340)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSCC--TTS---------------CCEECSSHHHHHHTCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEcCCcc--ccc---------------CceecCCHHHHHhcCCE
Confidence 47999999 79999999999998776 8999998642 100 01123478889999999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
|+++..
T Consensus 226 Vil~vP 231 (340)
T 4dgs_A 226 LAVCVA 231 (340)
T ss_dssp EEECC-
T ss_pred EEEeCC
Confidence 999753
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0056 Score=55.60 Aligned_cols=72 Identities=8% Similarity=-0.003 Sum_probs=43.7
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al 79 (320)
|+++++||+|+| +|.+|..++..|...+.+ +++ ++|+++ ++++..+.. +.. ....+++.+.+
T Consensus 1 M~m~~~rigiiG-~G~ig~~~~~~l~~~~~~------~~~av~d~~~--~~~~~~a~~-------~~~-~~~~~~~~~ll 63 (329)
T 3evn_A 1 MSLSKVRYGVVS-TAKVAPRFIEGVRLAGNG------EVVAVSSRTL--ESAQAFANK-------YHL-PKAYDKLEDML 63 (329)
T ss_dssp ----CEEEEEEB-CCTTHHHHHHHHHHHCSE------EEEEEECSCS--STTCC---C-------CCC-SCEESCHHHHH
T ss_pred CCCCceEEEEEe-chHHHHHHHHHHHhCCCc------EEEEEEcCCH--HHHHHHHHH-------cCC-CcccCCHHHHh
Confidence 788889999999 699999998888765432 554 778864 333221111 100 02345777777
Q ss_pred C--CCcEEEEeC
Q 020875 80 T--GVNIAVMVG 89 (320)
Q Consensus 80 ~--~aDvVi~~a 89 (320)
+ ++|+|+++.
T Consensus 64 ~~~~~D~V~i~t 75 (329)
T 3evn_A 64 ADESIDVIYVAT 75 (329)
T ss_dssp TCTTCCEEEECS
T ss_pred cCCCCCEEEECC
Confidence 7 799999874
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0023 Score=58.26 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=46.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al 79 (320)
|+++++||+|+| +|.+|..++..|....- .+++ ++|+++ ++++..+.... . + ...+++.+.+
T Consensus 1 M~m~~~~igiiG-~G~~g~~~~~~l~~~~~------~~l~av~d~~~--~~~~~~~~~~~-~--~-----~~~~~~~~ll 63 (330)
T 3e9m_A 1 MSLDKIRYGIMS-TAQIVPRFVAGLRESAQ------AEVRGIASRRL--ENAQKMAKELA-I--P-----VAYGSYEELC 63 (330)
T ss_dssp --CCCEEEEECS-CCTTHHHHHHHHHHSSS------EEEEEEBCSSS--HHHHHHHHHTT-C--C-----CCBSSHHHHH
T ss_pred CCCCeEEEEEEC-chHHHHHHHHHHHhCCC------cEEEEEEeCCH--HHHHHHHHHcC-C--C-----ceeCCHHHHh
Confidence 788889999999 69999999988887532 2655 778764 33332222211 0 0 1234667777
Q ss_pred C--CCcEEEEeC
Q 020875 80 T--GVNIAVMVG 89 (320)
Q Consensus 80 ~--~aDvVi~~a 89 (320)
+ ++|+|+++.
T Consensus 64 ~~~~~D~V~i~t 75 (330)
T 3e9m_A 64 KDETIDIIYIPT 75 (330)
T ss_dssp HCTTCSEEEECC
T ss_pred cCCCCCEEEEcC
Confidence 6 799999974
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0068 Score=53.76 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=49.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.+||+|+| +|.+|.+++..|...|. +|.++|++. ++++ ++.+.. .+....++.+.++++|+
T Consensus 129 ~~~v~iiG-aG~~g~aia~~L~~~g~-------~V~v~~r~~--~~~~----~l~~~~-----g~~~~~~~~~~~~~aDi 189 (275)
T 2hk9_A 129 EKSILVLG-AGGASRAVIYALVKEGA-------KVFLWNRTK--EKAI----KLAQKF-----PLEVVNSPEEVIDKVQV 189 (275)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSSH--HHHH----HHTTTS-----CEEECSCGGGTGGGCSE
T ss_pred CCEEEEEC-chHHHHHHHHHHHHcCC-------EEEEEECCH--HHHH----HHHHHc-----CCeeehhHHhhhcCCCE
Confidence 47999999 59999999999998885 799999863 3332 222111 13333366778899999
Q ss_pred EEEeCCCC
Q 020875 85 AVMVGGFP 92 (320)
Q Consensus 85 Vi~~ag~~ 92 (320)
||.+....
T Consensus 190 Vi~atp~~ 197 (275)
T 2hk9_A 190 IVNTTSVG 197 (275)
T ss_dssp EEECSSTT
T ss_pred EEEeCCCC
Confidence 99987544
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00084 Score=64.35 Aligned_cols=76 Identities=8% Similarity=0.093 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
+++||+|+|| |++|++++..|++. +. +|.++|++. ++++..+.. .... ....++....++.++++++
T Consensus 22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~-------~V~v~~R~~--~ka~~la~~-~~~~-~~~~D~~d~~~l~~~l~~~ 89 (467)
T 2axq_A 22 MGKNVLLLGS-GFVAQPVIDTLAANDDI-------NVTVACRTL--ANAQALAKP-SGSK-AISLDVTDDSALDKVLADN 89 (467)
T ss_dssp -CEEEEEECC-STTHHHHHHHHHTSTTE-------EEEEEESSH--HHHHHHHGG-GTCE-EEECCTTCHHHHHHHHHTS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHhCCCC-------eEEEEECCH--HHHHHHHHh-cCCc-EEEEecCCHHHHHHHHcCC
Confidence 4568999995 99999999999987 44 799999863 333322211 0000 0000111112345677899
Q ss_pred cEEEEeCCC
Q 020875 83 NIAVMVGGF 91 (320)
Q Consensus 83 DvVi~~ag~ 91 (320)
|+||++++.
T Consensus 90 DvVIn~tp~ 98 (467)
T 2axq_A 90 DVVISLIPY 98 (467)
T ss_dssp SEEEECSCG
T ss_pred CEEEECCch
Confidence 999999874
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0039 Score=57.25 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=46.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al 79 (320)
+.+++||+|+| +|.+|...+..|... .- .+++ ++|+++ ++++..+..+ .+...+++.+.+
T Consensus 10 ~~~~~rvgiiG-~G~~g~~~~~~l~~~~~~------~~lvav~d~~~--~~~~~~~~~~---------~~~~~~~~~~ll 71 (354)
T 3q2i_A 10 TDRKIRFALVG-CGRIANNHFGALEKHADR------AELIDVCDIDP--AALKAAVERT---------GARGHASLTDML 71 (354)
T ss_dssp CSSCEEEEEEC-CSTTHHHHHHHHHHTTTT------EEEEEEECSSH--HHHHHHHHHH---------CCEEESCHHHHH
T ss_pred CCCcceEEEEc-CcHHHHHHHHHHHhCCCC------eEEEEEEcCCH--HHHHHHHHHc---------CCceeCCHHHHh
Confidence 34568999999 699999999888875 22 2654 888863 3333222211 124456777777
Q ss_pred C--CCcEEEEeC
Q 020875 80 T--GVNIAVMVG 89 (320)
Q Consensus 80 ~--~aDvVi~~a 89 (320)
+ ++|+|+++.
T Consensus 72 ~~~~~D~V~i~t 83 (354)
T 3q2i_A 72 AQTDADIVILTT 83 (354)
T ss_dssp HHCCCSEEEECS
T ss_pred cCCCCCEEEECC
Confidence 5 899999974
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0069 Score=54.12 Aligned_cols=76 Identities=21% Similarity=0.178 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
+++||+|+||+|.+|+.++..+.+..-+ +++ .+|++.. + ..+ .|+..........+.++.++.+.+.++
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~------eLvg~vd~~~~-~-~~G--~d~gel~G~~~~gv~v~~dl~~ll~~a 89 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDV------ELCAVLVRKGS-S-FVD--KDASILIGSDFLGVRITDDPESAFSNT 89 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSE------EEEEEBCCTTC-T-TTT--SBGGGGTTCSCCSCBCBSCHHHHTTSC
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCC------EEEEEEecCCc-c-ccc--cchHHhhccCcCCceeeCCHHHHhcCC
Confidence 4579999999999999999988765322 654 6677531 1 111 122221111123455667888888999
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+||-..
T Consensus 90 DVvIDFT 96 (288)
T 3ijp_A 90 EGILDFS 96 (288)
T ss_dssp SEEEECS
T ss_pred CEEEEcC
Confidence 9998653
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0042 Score=68.09 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCh-hHHHHHHHHHhcCcCCCCCCeEEEEEe-cCCccchhHHHHHHHhcc----cC---CCCcceEEeCC
Q 020875 4 EPVRVLVTGAAGQ-IGYALVPMIARGVMLGTDQPVILHMLD-IPPAAEALNGVKMELVDA----AF---PLLKGVVATTD 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~-vG~~la~~L~~~~~~~~~~~~ev~l~D-~~~~~~~~~~~~~dl~~~----~~---~~~~~v~~~~~ 74 (320)
+.+.++||||+|. ||.+++..|+..|. .|++.+ ++. +++.....++... .. ....++....+
T Consensus 674 ~gKvaLVTGASsGgIG~aIA~~La~~GA-------~Vvl~~~R~~--~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~s 744 (1887)
T 2uv8_A 674 KDKYVLITGAGKGSIGAEVLQGLLQGGA-------KVVVTTSRFS--KQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQD 744 (1887)
T ss_dssp TTCEEEEESCCSSSHHHHHHHHHHHTTC-------EEEEEESSCC--HHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHCCC-------EEEEEecCCH--HHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHH
Confidence 4468999999998 99999999999986 788884 442 3333322233111 00 00111111111
Q ss_pred hhhh------------cC-CCcEEEEeCCCCCCC----CCC-----HHHHHHhhHHHHHHHHHHHhhhc----CCCeEEE
Q 020875 75 AVEA------------CT-GVNIAVMVGGFPRKE----GME-----RKDVMSKNVSIYKAQASALEQHA----APNCKVL 128 (320)
Q Consensus 75 ~~~a------------l~-~aDvVi~~ag~~~~~----~~~-----r~~~~~~n~~~~~~i~~~i~~~~----~~~~~vi 128 (320)
..+. +- ..|++|+.||+.... ..+ ....+..|+.....+.+.++... .+..+||
T Consensus 745 V~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IV 824 (1887)
T 2uv8_A 745 VEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVIL 824 (1887)
T ss_dssp HHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEE
T ss_pred HHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEE
Confidence 1111 11 589999999975422 112 23467789887777777663221 0125777
Q ss_pred EEcCc
Q 020875 129 VVANP 133 (320)
Q Consensus 129 v~snP 133 (320)
++|+-
T Consensus 825 nISS~ 829 (1887)
T 2uv8_A 825 PMSPN 829 (1887)
T ss_dssp EECSC
T ss_pred EEcCh
Confidence 77754
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0031 Score=58.20 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=25.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEe
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLD 43 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D 43 (320)
+||+|+||+|.+|..++..|.+.+. .+|+.+.
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~------~ev~~i~ 40 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPM------FELTALA 40 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSS------EEEEEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCC------CEEEEEE
Confidence 5999999999999999998876543 3776663
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=70.27 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCh-hHHHHHHHHHhcCcCCCCCCeEEEEE-ecCCccchhHHHHHHHhcccC----C---CCcceEEeCC
Q 020875 4 EPVRVLVTGAAGQ-IGYALVPMIARGVMLGTDQPVILHML-DIPPAAEALNGVKMELVDAAF----P---LLKGVVATTD 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~-vG~~la~~L~~~~~~~~~~~~ev~l~-D~~~~~~~~~~~~~dl~~~~~----~---~~~~v~~~~~ 74 (320)
+.+.++||||+|. ||.+++..|++.|. .|++. +++. +.+.....++..... . ...++....+
T Consensus 475 ~GKvALVTGASgGGIGrAIAr~LA~~GA-------~VVL~~~R~~--e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~es 545 (1688)
T 2pff_A 475 KDKYVLITGAGKGSIGAEVLQGLLQGGA-------KVVVTTSRFS--KQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQD 545 (1688)
T ss_dssp CSCCEEECSCSSSSTHHHHHHHHHHHTC-------EEEEEESSCS--TTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHHCcC-------EEEEEeCCCH--HHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHH
Confidence 3457999999998 99999999999986 78887 4543 233322333321100 0 0112222222
Q ss_pred hhhh------------cC-CCcEEEEeCCCCCCC----CCC-----HHHHHHhhHHHHHHHHHHHhhh---c-CCCeEEE
Q 020875 75 AVEA------------CT-GVNIAVMVGGFPRKE----GME-----RKDVMSKNVSIYKAQASALEQH---A-APNCKVL 128 (320)
Q Consensus 75 ~~~a------------l~-~aDvVi~~ag~~~~~----~~~-----r~~~~~~n~~~~~~i~~~i~~~---~-~~~~~vi 128 (320)
..+. +. ..|++|+.||+.... ..+ ....+..|+.....+.+.++.. . .+...||
T Consensus 546 VeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIV 625 (1688)
T 2pff_A 546 VEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVIL 625 (1688)
T ss_dssp HHHHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECC
T ss_pred HHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEE
Confidence 2222 22 589999999975322 112 2345678888777776665221 1 0125667
Q ss_pred EEcCc
Q 020875 129 VVANP 133 (320)
Q Consensus 129 v~snP 133 (320)
++|+-
T Consensus 626 nISSi 630 (1688)
T 2pff_A 626 PMSPN 630 (1688)
T ss_dssp CCCSC
T ss_pred EEECh
Confidence 66653
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0041 Score=68.12 Aligned_cols=124 Identities=11% Similarity=0.114 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCCh-hHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc----cCC---CCcceEEeC
Q 020875 2 AKEPVRVLVTGAAGQ-IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA----AFP---LLKGVVATT 73 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~-vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~----~~~---~~~~v~~~~ 73 (320)
..+.+.++||||+|. ||.+++..|+..|. .|++.+... .+.+.....++... ... ...++....
T Consensus 649 ~L~gKvaLVTGASgGgIG~aIAr~LA~~GA-------~VVl~~~R~-~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~e 720 (1878)
T 2uv9_A 649 TFQGKHALMTGAGAGSIGAEVLQGLLSGGA-------KVIVTTSRF-SRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQ 720 (1878)
T ss_dssp CCTTCEEEEESCCTTSHHHHHHHHHHHTTC-------EEEEEESSC-CHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCC-------EEEEEecCC-hHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHH
Confidence 334468999999998 99999999999986 788886432 12332222222111 000 011221111
Q ss_pred Chhhh----------cC-CCcEEEEeCCCCCCC----CCC-----HHHHHHhhHHHHHHHHHHHhhh---cC-CCeEEEE
Q 020875 74 DAVEA----------CT-GVNIAVMVGGFPRKE----GME-----RKDVMSKNVSIYKAQASALEQH---AA-PNCKVLV 129 (320)
Q Consensus 74 ~~~~a----------l~-~aDvVi~~ag~~~~~----~~~-----r~~~~~~n~~~~~~i~~~i~~~---~~-~~~~viv 129 (320)
+..+. +- ..|++|+.||+.... ..+ ....+..|+.....+.+.++.. .. +...||+
T Consensus 721 sV~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVn 800 (1878)
T 2uv9_A 721 DVEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILP 800 (1878)
T ss_dssp HHHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCE
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEE
Confidence 12111 22 589999999975422 122 2346778888766665542211 10 2256777
Q ss_pred EcCc
Q 020875 130 VANP 133 (320)
Q Consensus 130 ~snP 133 (320)
+|+-
T Consensus 801 ISS~ 804 (1878)
T 2uv9_A 801 LSPN 804 (1878)
T ss_dssp ECSC
T ss_pred Ecch
Confidence 7754
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.012 Score=54.66 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC----Cccch--hHHHHHHHhcccCCCCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP----PAAEA--LNGVKMELVDAAFPLLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~----~~~~~--~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (320)
+..||+|+| +|.+|..++..|+..|. .+|.++|++ .++.. +......+.+...+ .....++.+
T Consensus 191 ~~~kVVv~G-AGaAG~~iAkll~~~G~------~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~----~~~~~~L~e 259 (388)
T 1vl6_A 191 EEVKVVVNG-IGAAGYNIVKFLLDLGV------KNVVAVDRKGILNENDPETCLNEYHLEIARITNP----ERLSGDLET 259 (388)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHHTC------CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TCCCSCHHH
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHhCCC------CeEEEEECCCcccCCCcccccCHHHHHHHHhhhc----cCchhhHHH
Confidence 467999999 59999999999998875 289999986 32211 22222222221111 112347899
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
+++++|++|-+.+ | +. +.+++++.|+ ++.+++=.+||.
T Consensus 260 av~~ADVlIG~Sa-p---~l-----------~t~emVk~Ma----~~pIIfalSNPt 297 (388)
T 1vl6_A 260 ALEGADFFIGVSR-G---NI-----------LKPEWIKKMS----RKPVIFALANPV 297 (388)
T ss_dssp HHTTCSEEEECSC-S---SC-----------SCHHHHTTSC----SSCEEEECCSSS
T ss_pred HHccCCEEEEeCC-C---Cc-----------cCHHHHHhcC----CCCEEEEcCCCC
Confidence 9999999887754 3 21 1244555554 234667778996
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0077 Score=52.67 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=29.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.||+|+| +|.+|+.++..|+..|. + +|.++|.+.
T Consensus 32 ~~VlVvG-~Gg~G~~va~~La~~Gv-~-----~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVG-LGGLGCAASQYLASAGV-G-----NLTLLDFDT 65 (249)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTC-S-----EEEEECCCB
T ss_pred CeEEEEe-eCHHHHHHHHHHHHcCC-C-----eEEEEcCCC
Confidence 6999999 69999999999999886 2 899999863
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0092 Score=54.95 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=45.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al 79 (320)
|+++++||+|+| +|.+|...+..|....- .+++ ++|+++ ++++ .+ ... .+...+++.+.+
T Consensus 1 M~m~~~~vgiiG-~G~~g~~~~~~l~~~~~------~~l~av~d~~~--~~~~-~a---~~~------g~~~~~~~~~ll 61 (359)
T 3e18_A 1 MSLKKYQLVIVG-YGGMGSYHVTLASAADN------LEVHGVFDILA--EKRE-AA---AQK------GLKIYESYEAVL 61 (359)
T ss_dssp --CCCEEEEEEC-CSHHHHHHHHHHHTSTT------EEEEEEECSSH--HHHH-HH---HTT------TCCBCSCHHHHH
T ss_pred CCCCcCcEEEEC-cCHHHHHHHHHHHhCCC------cEEEEEEcCCH--HHHH-HH---Hhc------CCceeCCHHHHh
Confidence 788889999999 69999988887776532 2664 778763 3322 11 111 122345677777
Q ss_pred C--CCcEEEEeC
Q 020875 80 T--GVNIAVMVG 89 (320)
Q Consensus 80 ~--~aDvVi~~a 89 (320)
+ ++|+|+++.
T Consensus 62 ~~~~~D~V~i~t 73 (359)
T 3e18_A 62 ADEKVDAVLIAT 73 (359)
T ss_dssp HCTTCCEEEECS
T ss_pred cCCCCCEEEEcC
Confidence 6 789999874
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0082 Score=54.80 Aligned_cols=70 Identities=23% Similarity=0.209 Sum_probs=46.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al 79 (320)
|+ +++||+|+| +|.+|..++..|....- .+++ ++|+++ ++++..+..+ .....+++.+.+
T Consensus 1 M~-~~~rvgiiG-~G~~g~~~~~~l~~~~~------~~l~av~d~~~--~~~~~~a~~~---------g~~~~~~~~~~l 61 (344)
T 3euw_A 1 MS-LTLRIALFG-AGRIGHVHAANIAANPD------LELVVIADPFI--EGAQRLAEAN---------GAEAVASPDEVF 61 (344)
T ss_dssp ---CCEEEEEEC-CSHHHHHHHHHHHHCTT------EEEEEEECSSH--HHHHHHHHTT---------TCEEESSHHHHT
T ss_pred CC-CceEEEEEC-CcHHHHHHHHHHHhCCC------cEEEEEECCCH--HHHHHHHHHc---------CCceeCCHHHHh
Confidence 55 468999999 69999999988887532 2655 788863 3333222111 134456788888
Q ss_pred C--CCcEEEEeC
Q 020875 80 T--GVNIAVMVG 89 (320)
Q Consensus 80 ~--~aDvVi~~a 89 (320)
+ ++|+|+++.
T Consensus 62 ~~~~~D~V~i~t 73 (344)
T 3euw_A 62 ARDDIDGIVIGS 73 (344)
T ss_dssp TCSCCCEEEECS
T ss_pred cCCCCCEEEEeC
Confidence 7 899999975
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.019 Score=52.63 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc--C
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC--T 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al--~ 80 (320)
+++||+|+| +|.+|..++..|....- .+++ ++|+++ ++++..+..+. +...+++.+.+ .
T Consensus 4 ~~~~vgiiG-~G~~g~~~~~~l~~~~~------~~lvav~d~~~--~~~~~~~~~~g---------~~~~~~~~~~l~~~ 65 (354)
T 3db2_A 4 NPVGVAAIG-LGRWAYVMADAYTKSEK------LKLVTCYSRTE--DKREKFGKRYN---------CAGDATMEALLARE 65 (354)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTCSS------EEEEEEECSSH--HHHHHHHHHHT---------CCCCSSHHHHHHCS
T ss_pred CcceEEEEc-cCHHHHHHHHHHHhCCC------cEEEEEECCCH--HHHHHHHHHcC---------CCCcCCHHHHhcCC
Confidence 467999999 69999998888876522 2654 788863 34432222211 11135677777 5
Q ss_pred CCcEEEEeC
Q 020875 81 GVNIAVMVG 89 (320)
Q Consensus 81 ~aDvVi~~a 89 (320)
++|+|+++.
T Consensus 66 ~~D~V~i~t 74 (354)
T 3db2_A 66 DVEMVIITV 74 (354)
T ss_dssp SCCEEEECS
T ss_pred CCCEEEEeC
Confidence 799999975
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0074 Score=54.22 Aligned_cols=77 Identities=14% Similarity=0.077 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+.++|+|+| +|.+|.+++..|...|.. +|.+++++. ++++..+.++... . ..+....+..++++++|
T Consensus 140 ~~~~vlVlG-aGg~g~aia~~L~~~G~~------~V~v~nR~~--~ka~~la~~~~~~---~-~~~~~~~~~~~~~~~aD 206 (297)
T 2egg_A 140 DGKRILVIG-AGGGARGIYFSLLSTAAE------RIDMANRTV--EKAERLVREGDER---R-SAYFSLAEAETRLAEYD 206 (297)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTTCS------EEEEECSSH--HHHHHHHHHSCSS---S-CCEECHHHHHHTGGGCS
T ss_pred CCCEEEEEC-cHHHHHHHHHHHHHCCCC------EEEEEeCCH--HHHHHHHHHhhhc---c-CceeeHHHHHhhhccCC
Confidence 357999999 599999999999988852 799999863 4444333332210 0 01111124566788999
Q ss_pred EEEEeCCCCC
Q 020875 84 IAVMVGGFPR 93 (320)
Q Consensus 84 vVi~~ag~~~ 93 (320)
+||.+.+.+.
T Consensus 207 ivIn~t~~~~ 216 (297)
T 2egg_A 207 IIINTTSVGM 216 (297)
T ss_dssp EEEECSCTTC
T ss_pred EEEECCCCCC
Confidence 9999987654
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.012 Score=56.13 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=43.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc------CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG------VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~------~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al 79 (320)
+||+||| .|.+|.+++..|... |+ +|++.++.. ++....+.+. ...... .. ..+..+++
T Consensus 55 KkIgIIG-lGsMG~AmA~nLr~s~~~~g~G~-------~ViVg~r~~--sks~e~A~e~--G~~v~d-~t--a~s~aEAa 119 (525)
T 3fr7_A 55 KQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-------VVKIGLRKG--SKSFDEARAA--GFTEES-GT--LGDIWETV 119 (525)
T ss_dssp SEEEEEC-CTTHHHHHHHHHHHHHHHTTCCC-------EEEEEECTT--CSCHHHHHHT--TCCTTT-TC--EEEHHHHH
T ss_pred CEEEEEe-EhHHHHHHHHHHHhcccccCCCC-------EEEEEeCCc--hhhHHHHHHC--CCEEec-CC--CCCHHHHH
Confidence 6999999 799999999999987 76 666555432 1111112111 110000 00 12567889
Q ss_pred CCCcEEEEeC
Q 020875 80 TGVNIAVMVG 89 (320)
Q Consensus 80 ~~aDvVi~~a 89 (320)
++||+||++.
T Consensus 120 ~~ADVVILaV 129 (525)
T 3fr7_A 120 SGSDLVLLLI 129 (525)
T ss_dssp HHCSEEEECS
T ss_pred hcCCEEEECC
Confidence 9999999985
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0036 Score=57.59 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=44.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC-ChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-DAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~-~~~~al~~aD 83 (320)
+.||+|+||+|++|..++..|.+... .+|.++...+ -.|+..+=.+.... .++.... +..+.++++|
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~------~el~~l~S~~----~aG~~~~~~~p~~~--~~l~~~~~~~~~~~~~~D 80 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPE------AKITYLSSRT----YAGKKLEEIFPSTL--ENSILSEFDPEKVSKNCD 80 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT------EEEEEEECST----TTTSBHHHHCGGGC--CCCBCBCCCHHHHHHHCS
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCC------cEEEEEeCcc----cccCChHHhChhhc--cCceEEeCCHHHhhcCCC
Confidence 46999999999999999999988754 3888776432 12222220111110 1222221 3333237899
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+||++.+
T Consensus 81 vvf~alp 87 (351)
T 1vkn_A 81 VLFTALP 87 (351)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9999864
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.00064 Score=57.64 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=44.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.|||+|+| +|.+|+.++..|...|+ +|.++|+++. .+ .+... .+... +..++++++|+
T Consensus 19 ~~~I~iIG-~G~mG~~la~~L~~~G~-------~V~~~~r~~~---~~----~~~~~------g~~~~-~~~~~~~~aDv 76 (201)
T 2yjz_A 19 QGVVCIFG-TGDFGKSLGLKMLQCGY-------SVVFGSRNPQ---VS----SLLPR------GAEVL-CYSEAASRSDV 76 (201)
Confidence 47999999 69999999999988876 7888998642 11 11111 12222 45677889999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
||++.
T Consensus 77 Vilav 81 (201)
T 2yjz_A 77 IVLAV 81 (201)
Confidence 99975
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0077 Score=54.37 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=41.0
Q ss_pred CCCCCCEEEEEcCCChhHHH-HHHHHHhc-CcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYA-LVPMIARG-VMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~-la~~L~~~-~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (320)
|.++++||+|+| +|.+|.. ++..|... +. +++ ++|+++ ++++..+..+. .+ ..++..+
T Consensus 1 m~m~~~~vgiiG-~G~~g~~~~~~~l~~~~~~-------~lvav~d~~~--~~~~~~~~~~g---~~------~~~~~~~ 61 (319)
T 1tlt_A 1 MSLKKLRIGVVG-LGGIAQKAWLPVLAAASDW-------TLQGAWSPTR--AKALPICESWR---IP------YADSLSS 61 (319)
T ss_dssp ----CEEEEEEC-CSTHHHHTHHHHHHSCSSE-------EEEEEECSSC--TTHHHHHHHHT---CC------BCSSHHH
T ss_pred CCCCcceEEEEC-CCHHHHHHHHHHHHhCCCe-------EEEEEECCCH--HHHHHHHHHcC---CC------ccCcHHH
Confidence 778889999999 6999986 77777653 33 665 889875 33332222111 01 2234433
Q ss_pred hcCCCcEEEEeC
Q 020875 78 ACTGVNIAVMVG 89 (320)
Q Consensus 78 al~~aDvVi~~a 89 (320)
...++|+|+++.
T Consensus 62 l~~~~D~V~i~t 73 (319)
T 1tlt_A 62 LAASCDAVFVHS 73 (319)
T ss_dssp HHTTCSEEEECS
T ss_pred hhcCCCEEEEeC
Confidence 236899999875
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0079 Score=55.21 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=44.2
Q ss_pred CCCCCCEEEEEcCCChhHH-HHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGY-ALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~-~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~a 78 (320)
|+++++||+|+| +|.+|. .++..|....- .+++ ++|+++ ++++..+..+ .+...+++.+.
T Consensus 23 ~~m~~~rigiIG-~G~~g~~~~~~~l~~~~~------~~l~av~d~~~--~~~~~~a~~~---------g~~~~~~~~~l 84 (350)
T 3rc1_A 23 ANANPIRVGVIG-CADIAWRRALPALEAEPL------TEVTAIASRRW--DRAKRFTERF---------GGEPVEGYPAL 84 (350)
T ss_dssp ---CCEEEEEES-CCHHHHHTHHHHHHHCTT------EEEEEEEESSH--HHHHHHHHHH---------CSEEEESHHHH
T ss_pred CCCCceEEEEEc-CcHHHHHHHHHHHHhCCC------eEEEEEEcCCH--HHHHHHHHHc---------CCCCcCCHHHH
Confidence 445678999999 699998 68888876532 2654 788863 3333222221 11222567777
Q ss_pred cC--CCcEEEEeC
Q 020875 79 CT--GVNIAVMVG 89 (320)
Q Consensus 79 l~--~aDvVi~~a 89 (320)
++ ++|+|+++.
T Consensus 85 l~~~~~D~V~i~t 97 (350)
T 3rc1_A 85 LERDDVDAVYVPL 97 (350)
T ss_dssp HTCTTCSEEEECC
T ss_pred hcCCCCCEEEECC
Confidence 76 589999974
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.016 Score=53.33 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
..++|+|+| +|.+|...+..|.. .+. .+|.++|+++ ++++..+..+... ....+....+..++++++
T Consensus 128 ~~~~v~iIG-aG~~a~~~a~al~~~~~~------~~V~V~~r~~--~~a~~la~~~~~~---~g~~~~~~~~~~eav~~a 195 (350)
T 1x7d_A 128 NARKMALIG-NGAQSEFQALAFHKHLGI------EEIVAYDTDP--LATAKLIANLKEY---SGLTIRRASSVAEAVKGV 195 (350)
T ss_dssp TCCEEEEEC-CSTTHHHHHHHHHHHSCC------CEEEEECSSH--HHHHHHHHHHTTC---TTCEEEECSSHHHHHTTC
T ss_pred cCCeEEEEC-CcHHHHHHHHHHHHhCCC------cEEEEEcCCH--HHHHHHHHHHHhc---cCceEEEeCCHHHHHhcC
Confidence 357999999 69999999877754 343 2899999874 4555444444321 011244556788899999
Q ss_pred cEEEEeCC
Q 020875 83 NIAVMVGG 90 (320)
Q Consensus 83 DvVi~~ag 90 (320)
|+||.+..
T Consensus 196 DiVi~aTp 203 (350)
T 1x7d_A 196 DIITTVTA 203 (350)
T ss_dssp SEEEECCC
T ss_pred CEEEEecc
Confidence 99999754
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.013 Score=50.55 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=41.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEE-EEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-CCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-TGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al-~~aD 83 (320)
|||+|+| .|.+|+.++..|...++ ++ .++|+++ +.+. ...++.+.+ .++|
T Consensus 1 m~vgiIG-~G~mG~~~~~~l~~~g~-------~lv~v~d~~~---~~~~-----------------~~~~~~~l~~~~~D 52 (236)
T 2dc1_A 1 MLVGLIG-YGAIGKFLAEWLERNGF-------EIAAILDVRG---EHEK-----------------MVRGIDEFLQREMD 52 (236)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEECSSC---CCTT-----------------EESSHHHHTTSCCS
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCC-------EEEEEEecCc---chhh-----------------hcCCHHHHhcCCCC
Confidence 5899999 59999999998886665 66 6888763 1111 223666667 6999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 53 vVv~~~ 58 (236)
T 2dc1_A 53 VAVEAA 58 (236)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 999985
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=52.79 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC--ChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT--DAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~--~~~~al~~ 81 (320)
+..+++|+|| |.+|.+++..|...|.. +|.+++++. ++++..+.++.... + ...+.... ++.+++++
T Consensus 126 ~~k~vlVlGa-GG~g~aia~~L~~~G~~------~v~i~~R~~--~~a~~la~~~~~~~-~-~~~i~~~~~~~l~~~l~~ 194 (283)
T 3jyo_A 126 KLDSVVQVGA-GGVGNAVAYALVTHGVQ------KLQVADLDT--SRAQALADVINNAV-G-REAVVGVDARGIEDVIAA 194 (283)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCS------EEEEECSSH--HHHHHHHHHHHHHH-T-SCCEEEECSTTHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCC------EEEEEECCH--HHHHHHHHHHHhhc-C-CceEEEcCHHHHHHHHhc
Confidence 3569999995 99999999999998862 799999864 45554444443221 0 01233322 66777889
Q ss_pred CcEEEEeCCC
Q 020875 82 VNIAVMVGGF 91 (320)
Q Consensus 82 aDvVi~~ag~ 91 (320)
+|+||.+...
T Consensus 195 ~DiVInaTp~ 204 (283)
T 3jyo_A 195 ADGVVNATPM 204 (283)
T ss_dssp SSEEEECSST
T ss_pred CCEEEECCCC
Confidence 9999998643
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0015 Score=56.48 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=31.7
Q ss_pred CCCEEEEEcC----------------CChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 4 EPVRVLVTGA----------------AGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 4 ~~~kI~IiGA----------------~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
..++|+|||| +|.+|.++|..++.+|. +|.|+.++.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga-------~V~lv~~~~ 53 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGY-------EVCLITTKR 53 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTC-------EEEEEECTT
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCC-------EEEEEeCCc
Confidence 3579999999 89999999999999997 899999863
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.066 Score=42.24 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=41.4
Q ss_pred CCCEEEEEcCC---ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 4 EPVRVLVTGAA---GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~---G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
++.+|+|+|++ |.+|..++..|.+.|+ +|.-++.. .+.+. ......++.+..+
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~-------~V~~vnp~--~~~i~---------------G~~~~~s~~el~~ 68 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGF-------EVLPVNPN--YDEIE---------------GLKCYRSVRELPK 68 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTC-------EEEEECTT--CSEET---------------TEECBSSGGGSCT
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCC-------EEEEeCCC--CCeEC---------------CeeecCCHHHhCC
Confidence 46899999954 9999999999998886 65444443 12111 1222335555556
Q ss_pred CCcEEEEeC
Q 020875 81 GVNIAVMVG 89 (320)
Q Consensus 81 ~aDvVi~~a 89 (320)
++|+++++.
T Consensus 69 ~vDlvii~v 77 (138)
T 1y81_A 69 DVDVIVFVV 77 (138)
T ss_dssp TCCEEEECS
T ss_pred CCCEEEEEe
Confidence 899999974
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0012 Score=58.62 Aligned_cols=64 Identities=5% Similarity=0.022 Sum_probs=36.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEE-EEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+|||+|+| +|.+|++++..|... + +| .++|+++ ++++.....+ . . ...+..++++++|
T Consensus 2 ~m~I~iIG-~G~mG~~la~~l~~~-~-------~v~~v~~~~~--~~~~~~~~~~---g------~-~~~~~~~~~~~~D 60 (276)
T 2i76_A 2 SLVLNFVG-TGTLTRFFLECLKDR-Y-------EIGYILSRSI--DRARNLAEVY---G------G-KAATLEKHPELNG 60 (276)
T ss_dssp --CCEEES-CCHHHHHHHHTTC------------CCCEECSSH--HHHHHHHHHT---C------C-CCCSSCCCCC---
T ss_pred CceEEEEe-CCHHHHHHHHHHHHc-C-------cEEEEEeCCH--HHHHHHHHHc---C------C-ccCCHHHHHhcCC
Confidence 46899999 599999999888766 4 67 4899863 3332211111 1 1 2235556678999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+||++.
T Consensus 61 vVilav 66 (276)
T 2i76_A 61 VVFVIV 66 (276)
T ss_dssp CEEECS
T ss_pred EEEEeC
Confidence 999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 320 | ||||
| d7mdha1 | 175 | c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( | 7e-57 | |
| d7mdha2 | 188 | d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu | 1e-48 | |
| d5mdha2 | 179 | d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S | 1e-44 | |
| d5mdha1 | 154 | c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s | 9e-44 | |
| d1y7ta1 | 154 | c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th | 2e-43 | |
| d1y7ta2 | 173 | d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu | 3e-41 | |
| d1b8pa2 | 171 | d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp | 2e-31 | |
| d1guza2 | 163 | d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro | 1e-25 | |
| d1ldma2 | 169 | d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi | 6e-25 | |
| d1i0za2 | 172 | d.162.1.1 (A:161-332) Lactate dehydrogenase {Human | 9e-25 | |
| d2cmda2 | 167 | d.162.1.1 (A:146-312) Malate dehydrogenase {Escher | 2e-24 | |
| d2cmda1 | 145 | c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi | 2e-24 | |
| d2ldxa2 | 172 | d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse | 6e-24 | |
| d1mlda2 | 169 | d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S | 2e-23 | |
| d1llda2 | 170 | d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid | 4e-23 | |
| d1uxja2 | 164 | d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro | 4e-23 | |
| d1y6ja2 | 169 | d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost | 3e-22 | |
| d1mlda1 | 144 | c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s | 5e-22 | |
| d1llca2 | 172 | d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto | 8e-21 | |
| d1ldna2 | 168 | d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil | 2e-19 | |
| d1ez4a2 | 171 | d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto | 2e-19 | |
| d1pzga2 | 174 | d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop | 3e-19 | |
| d1o6za1 | 142 | c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon | 4e-19 | |
| d1hyea2 | 168 | d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd | 4e-19 | |
| d1a5za2 | 172 | d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm | 6e-19 | |
| d1hyha2 | 163 | d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy | 1e-17 | |
| d1guza1 | 142 | c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium | 5e-17 | |
| d1hyea1 | 145 | c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge | 7e-17 | |
| d1llda1 | 143 | c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac | 2e-15 | |
| d1t2da2 | 165 | d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar | 2e-14 | |
| d1o6za2 | 161 | d.162.1.1 (A:163-330) Malate dehydrogenase {Archae | 2e-13 | |
| d1a5za1 | 140 | c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto | 8e-13 | |
| d1ojua1 | 142 | c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon | 6e-12 | |
| d1ez4a1 | 146 | c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac | 1e-11 | |
| d1hyha1 | 146 | c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro | 4e-11 | |
| d1ldna1 | 148 | c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus | 1e-10 | |
| d2ldxa1 | 159 | c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu | 2e-09 | |
| d1i0za1 | 160 | c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho | 3e-09 | |
| d1y6ja1 | 142 | c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi | 5e-09 | |
| d1up7a1 | 162 | c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther | 6e-09 | |
| d1uxja1 | 142 | c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex | 9e-09 | |
| d1u8xx1 | 167 | c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase | 4e-07 | |
| d1pzga1 | 154 | c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas | 7e-07 | |
| d1s6ya1 | 169 | c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci | 4e-05 | |
| d1t2da1 | 150 | c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p | 6e-05 | |
| d1obba1 | 171 | c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto | 2e-04 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 3e-04 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 0.003 |
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 179 bits (456), Expect = 7e-57
Identities = 68/156 (43%), Positives = 90/156 (57%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
K+ V + V+GAAG I L+ +A G + G DQP+ L +L + +AL GV MEL D
Sbjct: 20 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELED 79
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
+ +PLL+ V D E V+ A+++G PR GMER ++ N I+ Q AL
Sbjct: 80 SLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 139
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
A+ N KVLVV NP NTNALI + AP IPAKN L
Sbjct: 140 ASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL 175
|
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 159 bits (402), Expect = 1e-48
Identities = 61/148 (41%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
TRLD NRA Q++ K V V NV IWGNHS++Q PD +A ++ +PV+E++K
Sbjct: 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDG----RPVKEVIKR 56
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
WL EF TVQ+RG A+I+ SSA S A S D I+ V TPEG W S GVY+ G
Sbjct: 57 TKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTG 116
Query: 277 S-YNVPAGLIYSFPVTC-RNGEWTIVQG 302
+ Y + +++S P +G++ +
Sbjct: 117 NPYGIAEDIVFSMPCRSKGDGDYELATD 144
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 148 bits (374), Expect = 1e-44
Identities = 102/147 (69%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
TRLDHNRA QI+ KL V DVKNVIIWGNHSS+QYPDVNHA V A E V E VKD
Sbjct: 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
D+WL GEFITTVQQRGAA+IKARKLSSA+SAA + CDH+RD GTPEG +VSMG+ SDG
Sbjct: 61 DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120
Query: 277 -SYNVPAGLIYSFPVTCRNGEWTIVQG 302
SY VP L+YSFPVT ++ W IV+G
Sbjct: 121 NSYGVPDDLLYSFPVTIKDKTWKIVEG 147
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 145 bits (366), Expect = 9e-44
Identities = 81/153 (52%), Positives = 108/153 (70%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 61
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK V+AT A +++A++VG PR++GMERKD++ NV I+K Q +AL+++A
Sbjct: 62 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 121
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
+ KV+VV NPANTN L + APSIP +N +CL
Sbjct: 122 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCL 154
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 144 bits (364), Expect = 2e-43
Identities = 85/152 (55%), Positives = 103/152 (67%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
FPLL G+ AT D A + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNIT 154
+ KVLVV NPANTNALI + AP + +N T
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFT 153
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 139 bits (351), Expect = 3e-41
Identities = 77/147 (52%), Positives = 103/147 (70%), Gaps = 5/147 (3%)
Query: 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK 215
+TRLDHNRA Q+++K V ++ + +WGNHSS+ +PD+ HA V+ +P ELV
Sbjct: 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDG----RPALELVD 56
Query: 216 DDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSD 275
+ W FI TV QRGAAII+AR SSA SAA++A +HIRDW LGTPEG WVSM V S
Sbjct: 57 ME-WYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQ 115
Query: 276 GSYNVPAGLIYSFPVTCRNGEWTIVQG 302
G Y +P G++YSFPVT ++G + +V+G
Sbjct: 116 GEYGIPEGIVYSFPVTAKDGAYRVVEG 142
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Score = 113 bits (284), Expect = 2e-31
Identities = 75/145 (51%), Positives = 98/145 (67%), Gaps = 5/145 (3%)
Query: 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 217
RLDHNRAL QI+ K VS ++ + +WGNHS + Y D +A + V++++ DD
Sbjct: 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQI----DGASVKDMINDD 57
Query: 218 AWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGS 277
AW F+ TV +RGAAII AR +SSA SAA++A DHI DWVLGT W +MG+ SDGS
Sbjct: 58 AWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAG-KWTTMGIPSDGS 116
Query: 278 YNVPAGLIYSFPVTCRNGEWTIVQG 302
Y +P G+I+ FPVT NGE+ IVQG
Sbjct: 117 YGIPEGVIFGFPVTTENGEYKIVQG 141
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 98.2 bits (244), Expect = 1e-25
Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 8/143 (5%)
Query: 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA 218
LD R I+ +L V + D+ N + G H + P V + TV + A
Sbjct: 4 LDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVVKYTTVAGIPISDLL------PA 56
Query: 219 WLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY 278
+ + + GA I++ K SA A +S+ + + ++ + V +G Y
Sbjct: 57 ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVL-DRKRVLPCAVGLEGQY 115
Query: 279 NVPAGLIYSFPVTCRNGEWTIVQ 301
+ + RNG I +
Sbjct: 116 GIDKTFVGVPVKLGRNGVEQIYE 138
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Score = 96.5 bits (239), Expect = 6e-25
Identities = 16/146 (10%), Positives = 36/146 (24%), Gaps = 6/146 (4%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
LD R + E+L V +I H S + V + + L
Sbjct: 3 CNLDSARFRYLMGERLGVHSCSCHGWVIGE-HGDSVPSVWSGMNVAS----IKLHPLDGT 57
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
+ +A + A + + + ++ +
Sbjct: 58 NKDKQDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCR-VHPVSTMVKD 116
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQG 302
Y + + S P + + +
Sbjct: 117 FYGIKDNVFLSLPCVLNDHGISNIVK 142
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 96.1 bits (238), Expect = 9e-25
Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 3/146 (2%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
LD R ++EKL + S + I G H S + V + ++ E+ D
Sbjct: 3 CNLDSARFRYLMAEKLGIHPSSC-HGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTD 61
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
+ N + + + A + K + + A + + G
Sbjct: 62 NDSENWKEVHKMVVESAYEVIKLKGYT--NWAIGLSVADLIESMLKNLSRIHPVSTMVKG 119
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQG 302
Y + + S P T V
Sbjct: 120 MYGIENEVFLSLPCILNARGLTSVIN 145
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 95.2 bits (236), Expect = 2e-24
Identities = 16/150 (10%), Positives = 42/150 (28%), Gaps = 12/150 (8%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
T LD R+ ++E Q +V+ +I G+ + P ++
Sbjct: 2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGV------------SF 49
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
+ +Q G +++A+ + + + L + +
Sbjct: 50 TEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYV 109
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQGTDAI 306
+ +S P+ + +
Sbjct: 110 EGDGQYARFFSQPLLLGKNGVEERKSIGTL 139
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 94.3 bits (234), Expect = 2e-24
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 16/160 (10%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
+V V GAAG IG AL ++ + G++ L + DI P GV ++L +
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTP---GVAVDLSHIPTAVK 54
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
+ DA A G ++ ++ G RK GM+R D+ + N I K + + P
Sbjct: 55 IKGFSGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKAC 113
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
+ ++ NP NT I E D N+ G
Sbjct: 114 IGIITNPVNTTVAIAAEVLKK--------AGVYDKNKLFG 145
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.2 bits (233), Expect = 6e-24
Identities = 22/146 (15%), Positives = 38/146 (26%), Gaps = 3/146 (2%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
LD R I EKL V + + + G H S P + V + + D
Sbjct: 3 CNLDSARFRYLIGEKLGVNPTSC-HGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTD 61
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
+ + + G + K + S A + + G
Sbjct: 62 KNKQHWKNVHKQVVEGGYEVLDMKGYT--SWAIGLSVTDLARSILKNLKRVHPVTTLVKG 119
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQG 302
+ + + S P T
Sbjct: 120 FHGIKEEVFLSIPCVLGESGITDFVK 145
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 92.9 bits (230), Expect = 2e-23
Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 12/144 (8%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
T LD RA ++E + + V +I G+ + P ++ T + + L
Sbjct: 2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGR 61
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
+Q+ G ++KA+ + + + + + + L + S
Sbjct: 62 -----------IQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFV 110
Query: 277 SYNVPAGLIYSFPVTC-RNGEWTI 299
+S P+ + G
Sbjct: 111 KSQETDCPYFSTPLLLGKKGIEKN 134
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 91.8 bits (227), Expect = 4e-23
Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 4/145 (2%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVK- 215
T LD R I+++ V V +V + I G H S+ P AT+
Sbjct: 1 TNLDSARLRFLIAQQTGVNVKNV-HAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHD 59
Query: 216 DDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSD 275
E I + A I K ++ + S D I + + +
Sbjct: 60 PLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVL--HDTNRILPVSSMLK 117
Query: 276 GSYNVPAGLIYSFPVTCRNGEWTIV 300
+ + + + R G +
Sbjct: 118 DFHGISDICMSVPTLLNRQGVNNTI 142
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 91.7 bits (227), Expect = 4e-23
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 8/143 (5%)
Query: 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA 218
LD R I+ + V V DV ++ G H P +T++ + +
Sbjct: 4 LDAARYRTFIAMEAGVSVKDV-QAMLMGGHGDEMVPLPRFSTISGIPVSEFI------AP 56
Query: 219 WLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY 278
+ + ++ G I+ K SA A ++A + + VL + + + Y G Y
Sbjct: 57 DRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLK-DKKRVMPVAAYLTGQY 115
Query: 279 NVPAGLIYSFPVTCRNGEWTIVQ 301
+ + G I++
Sbjct: 116 GLNDIYFGVPVILGAGGVEKILE 138
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 89.5 bits (221), Expect = 3e-22
Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 4/148 (2%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
T LD R +SEKL V V +V + I G H SQ P + + + + + +
Sbjct: 1 TVLDSIRFRYLLSEKLGVDVKNV-HGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCN 59
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
+ + I + A I K ++ A S + + + T ++G +G
Sbjct: 60 FTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLL--KNQNTIRTVGTVING 117
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQGTD 304
Y + I P + V +
Sbjct: 118 MYGIEDVAIS-LPSIVNSEGVQEVLQFN 144
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 88.1 bits (218), Expect = 5e-22
Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL- 65
+V V GA+G IG L ++ ++ L + DI GV +L
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSR-----LTLYDIAHT----PGVAADLSHIETRAT 52
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
+KG + + G ++ V+ G PRK GM R D+ + N +I +A QH P+
Sbjct: 53 VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDA 111
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
+ +++NP N+ I E + N+ G
Sbjct: 112 MICIISNPVNSTIPITAEVFKK--------HGVYNPNKIFG 144
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 85.6 bits (211), Expect = 8e-21
Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 4/145 (2%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
T LD R I+E +NV V + I G H +++P +HA + + V+ +
Sbjct: 1 TSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEI 59
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
+ V+ II KL A + + E + + VY DG
Sbjct: 60 KEDKLVKMFEDVRDAAYEII---KLKGATFYGIATALARISKAILNDENAVLPLSVYMDG 116
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQ 301
Y + I + V RNG I++
Sbjct: 117 QYGINDLYIGTPAVINRNGIQNILE 141
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 81.8 bits (201), Expect = 2e-19
Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 5/146 (3%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
T LD R + E +V +V + I G H ++ P + A + K V ++
Sbjct: 1 TILDTARFRFLLGEYFSVAPQNV-HAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEE 59
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
E I + A I +K ++ A R +
Sbjct: 60 AQKDL-ERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAI---LHNENAILTVSAYLD 115
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQG 302
+ P V
Sbjct: 116 GLYGERDVYIGVPAVINRNGIREVIE 141
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 81.8 bits (201), Expect = 2e-19
Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 5/145 (3%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
T LD +R + ++ NV V + I G H S++ + AT+ T +PVR++ K+
Sbjct: 1 TSLDSSRLRVALGKQFNVDPRSV-DAYIMGEHGDSEFAAYSTATIGT----RPVRDVAKE 55
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
+ + L A + E + +G Y DG
Sbjct: 56 QGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDG 115
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQ 301
Y + I + + G I++
Sbjct: 116 QYGLNDIYIGTPAIIGGTGLKQIIE 140
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 81.5 bits (200), Expect = 3e-19
Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 4/144 (2%)
Query: 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA 218
LD R +++ L+V DV + G H P V + TVN +K +++ V +
Sbjct: 4 LDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62
Query: 219 WLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY 278
L E + G I++ SA A +++ + L E + VY +G Y
Sbjct: 63 QLE-EIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFL-NDEKRVIPCSVYCNGEY 120
Query: 279 NVPAGLIYSFPVTCRNGEWTIVQG 302
+ I P V
Sbjct: 121 GLKDMFIGL-PAVIGGAGIERVIE 143
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 80.0 bits (197), Expect = 4e-19
Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 19/160 (11%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
+V V GAAG +G A IA D + +DIP + G +
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALR-----DIADEVVFVDIPDKEDDTVGQAADTNHGI-AYD 55
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
E G ++ V+ G PR+ G R D+ N I + S+L++H +
Sbjct: 56 SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYI 114
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
L +NP + L E + +G
Sbjct: 115 SLTTSNPVDLLNRHLYE------------AGDRSREQVIG 142
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 80.7 bits (198), Expect = 4e-19
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 8/146 (5%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
T LD R I++ V + +V I G H S P ++ ++ + +
Sbjct: 3 THLDSLRFKVAIAKFFGVHIDEV-RTRIIGEHGDSMVPLLSATSIG-----GIPIQKFER 56
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
L + I + I K S A++ + +R V E +++ Y DG
Sbjct: 57 FKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIV--NNEKRLLTLSAYVDG 114
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQG 302
++ + PV V
Sbjct: 115 EFDGIRDVCIGVPVKIGRDGIEEVVS 140
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 80.7 bits (198), Expect = 6e-19
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 5/146 (3%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
T LD R I++ V +V + G H S+ P + A + + + K
Sbjct: 2 TVLDTARLRTLIAQHCGFSPRSV-HVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKC 60
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
D+ + F +R A I RK ++ + A + D + + V
Sbjct: 61 DSKILENFAEKT-KRAAYEIIERKGATHYAIALAVADIVESI---FFDEKRVLTLSVYLE 116
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQG 302
Y L S PVT +
Sbjct: 117 DYLGVKDLCISVPVTLGKHGVERILE 142
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 76.8 bits (188), Expect = 1e-17
Identities = 21/146 (14%), Positives = 42/146 (28%), Gaps = 13/146 (8%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
T LD R + E ++ V + G H +SQ+ + V +P+ L
Sbjct: 2 TLLDTARMQRAVGEAFDLDPRSV-SGYNLGEHGNSQFVAWSTVRVMG----QPIVTLADA 56
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
++ G ++ K ++ A+SA + +
Sbjct: 57 GDIDLAAIEEEARKGGFTVLNG-KGYTSYGVATSAIRIAKAV-------MADAHAELVVS 108
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQG 302
+ G+ S+P
Sbjct: 109 NRRDDMGMYLSYPAIIGRDGVLAETT 134
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 74.4 bits (182), Expect = 5e-17
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
++ V GA G +G +A + + V+L +++ P +AL+ M
Sbjct: 2 KITVIGA-GNVGATTAFRLAEKQL--ARELVLLDVVEGIPQGKALD---MYESGPVGLFD 55
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
V + D +I ++ G PRK GM R+D++ KN I K + +H + N
Sbjct: 56 TKVTGSND-YADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPI 113
Query: 127 VLVVANPANTNALILKEFA 145
++VV+NP + + +
Sbjct: 114 IIVVSNPLDIMTHVAWVRS 132
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 74.0 bits (181), Expect = 7e-17
Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 22/163 (13%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
+V + GA+G++G A ++A+ + L ++ + L G++ ++ DA
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKD-----LVLIGREHSINKLEGLREDIYDALAGTR 56
Query: 67 ---KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
V + + + ++ ++ G PRKEGM R D+ N I A + +
Sbjct: 57 SDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-- 114
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
+ K+ V+ NP + ++ + N+ G
Sbjct: 115 DTKIFVITNPVDVMTYKALVD------------SKFERNQVFG 145
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 70.0 bits (171), Expect = 2e-15
Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
P ++ V GA G +G L A+ + + ++ A E + +++ +
Sbjct: 1 PTKLAVIGA-GAVGSTLAFAAAQ-------RGIAREIVLEDIAKERVEAEVLDMQHGSSF 52
Query: 65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
+ +D E C ++ V+ G +K G R +++ V+I KA L + A PN
Sbjct: 53 YPTVSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PN 111
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
+++ NP + + ++ LT L N+ G
Sbjct: 112 AIYMLITNPVDIATHVAQK------------LTGLPENQIFG 141
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 67.9 bits (165), Expect = 2e-14
Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 6/144 (4%)
Query: 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA 218
LD +R IS+KLNV DV I+ G H + + TV ++ + + DA
Sbjct: 3 LDTSRLKYYISQKLNVCPRDVNAHIV-GAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61
Query: 219 WLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSY 278
L I A I S ++ A++ + ++ + +G Y
Sbjct: 62 ELE--AIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYL--KDLKKVLICSTLLEGQY 117
Query: 279 NVPAGLIYSFPVTCRNGEWTIVQG 302
+ + PV V
Sbjct: 118 G-HSDIFGGTPVVLGANGVEQVIE 140
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 65.2 bits (158), Expect = 2e-13
Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 13/146 (8%)
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 216
RLD R +SE+ + V +V I G H +Q P + +V+ +
Sbjct: 3 GRLDSARFRYVLSEEFDAPVQNV-EGTILGEHGDAQVPVFSKVSVDGT---------DPE 52
Query: 217 DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG 276
+ E + Q A + RK ++ A + + V
Sbjct: 53 FSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAI---LHDTGEVLPASVKLE 109
Query: 277 SYNVPAGLIYSFPVTCRNGEWTIVQG 302
+ PV+ + +
Sbjct: 110 GEFGHEDTAFGVPVSLGSNGVEEIVE 135
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 62.8 bits (152), Expect = 8e-13
Identities = 24/139 (17%), Positives = 55/139 (39%), Gaps = 10/139 (7%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
++ + G G++G + + + M+ I + G ++L+ P
Sbjct: 2 KIGIVGL-GRVGSSTAFALLM-------KGFAREMVLIDVDKKRAEGDALDLIHGT-PFT 52
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
+ G ++ ++ G P+K G R ++ +N + K A + ++A P+
Sbjct: 53 RRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSI 111
Query: 127 VLVVANPANTNALILKEFA 145
V+VV NP + + +
Sbjct: 112 VIVVTNPVDVLTYFFLKES 130
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.5 bits (146), Expect = 6e-12
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 10/140 (7%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
++ GA G++G + + + ++DI + G M+L AA +
Sbjct: 2 KLGFVGA-GRVGSTSAFTCLLNLDVDE-----IALVDIAE--DLAVGEAMDLAHAAAGID 53
Query: 67 KGVVAT-TDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
K G I V+ G RK GM R D+ KN I K A + ++ AP
Sbjct: 54 KYPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APES 112
Query: 126 KVLVVANPANTNALILKEFA 145
K+LVV NP + I+ + +
Sbjct: 113 KILVVTNPMDVMTYIMWKES 132
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 59.3 bits (143), Expect = 1e-11
Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 10/139 (7%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
+V++ G G +G + +A+ I I + ++ A
Sbjct: 7 KVVLVGD-GAVGSSYAFAMAQQG--------IAEEFVIVDVVKDRTKGDALDLEDAQAFT 57
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
+ C ++ V+ G P+K G R D+++KN++I + + +
Sbjct: 58 APKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGI 116
Query: 127 VLVVANPANTNALILKEFA 145
LV ANP + +F+
Sbjct: 117 FLVAANPVDILTYATWKFS 135
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 58.2 bits (140), Expect = 4e-11
Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 25/164 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
++ + G G +G A+ + Q V + I + +++ DA L
Sbjct: 3 KIGIIGL-GNVGAAVAHGLIA-------QGVADDYVFIDANEAKVKADQIDFQDAMANLE 54
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPR----KEGMERKDVMSKNVSIYKAQASALEQHAA 122
+ A ++ + G + +R + S+ ++ + L++
Sbjct: 55 AHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG- 113
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
+ ++V++NP + + + +T ++ +G
Sbjct: 114 FHGVLVVISNPVDVITALFQH------------VTGFPAHKVIG 145
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 56.6 bits (136), Expect = 1e-10
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 9/139 (6%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
RV+V GA G +G + V + Q + ++ I G M+
Sbjct: 8 RVVVIGA-GFVGASYVFALMN-------QGIADEIVLIDANESKAIGDAMDFNHGKVFAP 59
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
K V + C ++ V+ G +K G R D++ KN++I+++ ++
Sbjct: 60 KPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGL 118
Query: 127 VLVVANPANTNALILKEFA 145
LV NP + +F+
Sbjct: 119 FLVATNPVDILTYATWKFS 137
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.5 bits (128), Expect = 2e-09
Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 21/162 (12%)
Query: 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
++ V G G +G A I L ++D + L G ++L +
Sbjct: 19 RCKITVVGV-GDVGMACAISILLK-----GLADELALVDADT--DKLRGEALDLQHGSLF 70
Query: 65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
L + + ++ G G R D++ +NV+I KA + Q++ P+
Sbjct: 71 LSTPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PD 129
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
CK++VV NP + ++ + ++ R +G
Sbjct: 130 CKIIVVTNPVDILTYVVWK------------ISGFPVGRVIG 159
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 52.7 bits (126), Expect = 3e-09
Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 21/160 (13%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
++ V G GQ+G A I + + + + + L G M+L + L
Sbjct: 22 KITVVGV-GQVGMACAISILG-------KSLADELALVDVLEDKLKGEMMDLQHGSLFLQ 73
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
+ I V+ G ++EG R +++ +NV+++K + +++ P+C
Sbjct: 74 TPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYS-PDCI 132
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
++VV+NP + + + L+ L +R +G
Sbjct: 133 IIVVSNPVDILTYVTWK------------LSGLPKHRVIG 160
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 51.9 bits (124), Expect = 5e-09
Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
+V + GA G +G + +A + L ++D+ E G M++ P +
Sbjct: 3 KVAIIGA-GFVGASAAFTMALR-QTANE----LVLIDVFK--EKAIGEAMDINHGL-PFM 53
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
+ ++ V+ G RK G R D+ KNV I K + ++ +
Sbjct: 54 GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGV 112
Query: 127 VLVVANPANTNALILKEFA 145
+LVV+NP + ++++++
Sbjct: 113 ILVVSNPVDIITYMIQKWS 131
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Score = 52.0 bits (124), Expect = 6e-09
Identities = 14/155 (9%), Positives = 40/155 (25%), Gaps = 26/155 (16%)
Query: 14 AGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA 71
G P + +G++ ++ I + DI + + ++ V V+
Sbjct: 8 GGSSY---TPELVKGLLDISEDVRIDEVIFYDIDEEKQ---KIVVDFVKRLVKDRFKVLI 61
Query: 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS---------------- 115
+ A + +G E + + + + +
Sbjct: 62 SDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVE 121
Query: 116 --ALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148
N ++ NP+ ++ +
Sbjct: 122 EYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYE 156
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 51.2 bits (122), Expect = 9e-09
Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 21/161 (13%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
++ + GA G +G +A V+L +++ P +AL+ +
Sbjct: 3 KISIIGA-GFVGSTTAHWLAAK---ELGDIVLLDIVEGVPQGKALD---LYEASPIEGFD 55
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
V T + ++ V+ G PRK GM R+D++ N I +A S + PN
Sbjct: 56 VRVTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAV 113
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ 167
+++V NP + + E ++ R +GQ
Sbjct: 114 IIMVNNPLDAMTYLAAE------------VSGFPKERVIGQ 142
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Score = 46.9 bits (111), Expect = 4e-07
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 27/168 (16%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVD 60
K+ +++ G G P I ++ ++ I L + D + ++
Sbjct: 1 KKSFSIVIAGG----GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI 56
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKN-------------- 106
ATTD EA T V+ + + + +
Sbjct: 57 REKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGI 116
Query: 107 ------VSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148
+ +E+++ P+ +L +NPA A + P+
Sbjct: 117 AYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVAEATRRLRPNS 163
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 45.8 bits (108), Expect = 7e-07
Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 25/171 (14%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
+ + +V + G+ G IG + + A + + + D+ + + V
Sbjct: 3 LVQRRKKVAMIGS-GMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVT 55
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEG-----MERKDVMSKNVSIYKAQAS 115
+ V A A TG + ++ G + G R D++ N I +
Sbjct: 56 SVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQ 115
Query: 116 ALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
++++ P ++VV NP + ++ E + + N G
Sbjct: 116 NIKKYC-PKTFIIVVTNPLDCMVKVMCE------------ASGVPTNMICG 153
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 41.2 bits (96), Expect = 4e-05
Identities = 19/158 (12%), Positives = 43/158 (27%), Gaps = 26/158 (16%)
Query: 14 AGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKM--ELVDAAFPLLKGV 69
G P + G++ + + L ++DIP E L V + + + +
Sbjct: 9 GGSSY---TPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEI 65
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE----------- 118
T D A G + E + + + + + +
Sbjct: 66 HLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPV 125
Query: 119 --------QHAAPNCKVLVVANPANTNALILKEFAPSI 148
+ P+ ++ NPA + +
Sbjct: 126 ILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQE 163
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 40.5 bits (94), Expect = 6e-05
Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 26/165 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
++++ G+ G IG + +I + + + + DI + +
Sbjct: 5 KIVLVGS-GMIGGVMATLIVQKNL------GDVVLFDIVKNMPHGKALDTSHTNV-MAYS 56
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHA 121
V+ ++ + G ++ ++ GF + G R D++ N I ++++
Sbjct: 57 NCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC 116
Query: 122 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALG 166
PN ++VV NP + +L + + + N+ +G
Sbjct: 117 -PNAFIIVVTNPVDVMVQLLHQ------------HSGVPKNKIIG 148
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 16/161 (9%), Positives = 37/161 (22%), Gaps = 32/161 (19%)
Query: 14 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--FPLLKGVVA 71
AG ++L + + T + + E L+ +
Sbjct: 10 AGSAVFSLRLV---SDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK 66
Query: 72 TTDAVEACTGVNIAVMVGGFPRKEGMERKDV--------------------------MSK 105
T + + + + +E+
Sbjct: 67 TMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYN 126
Query: 106 NVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP 146
+ + A +E+ + P L ANP ++ P
Sbjct: 127 QLKYFVDIARKIEKLS-PKAWYLQAANPIFEGTTLVTRTVP 166
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (91), Expect = 3e-04
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 7 RVLVTGAAGQIGYALVPM-IARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
RV + G G +G A+ RG V L L++LD + +++ V A
Sbjct: 4 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 63
Query: 65 LLKGVVATTDAVEACTGVNI 84
+ G+VA N+
Sbjct: 64 KVGGIVANNTYPADFIYQNM 83
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.003
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 1 MAKEPVRVLVTGAAGQIGYALV 22
MA+ +VLVTG AG IG V
Sbjct: 1 MAE---KVLVTGGAGYIGSHTV 19
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 320 | |||
| d7mdha2 | 188 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 100.0 | |
| d5mdha2 | 179 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1y7ta2 | 173 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 100.0 | |
| d1b8pa2 | 171 | Malate dehydrogenase {Aquaspirillum arcticum [TaxI | 100.0 | |
| d1i0za2 | 172 | Lactate dehydrogenase {Human (Homo sapiens), heart | 100.0 | |
| d1llda2 | 170 | Lactate dehydrogenase {Bifidobacterium longum, str | 100.0 | |
| d1ojua2 | 152 | Lactate dehydrogenase {Archaeon Archaeoglobus fulg | 100.0 | |
| d1hyea2 | 168 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 100.0 | |
| d1y6ja2 | 169 | Lactate dehydrogenase {Clostridium thermocellum [T | 100.0 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 100.0 | |
| d1guza2 | 163 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 100.0 | |
| d1uxja2 | 164 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.98 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.98 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 99.98 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 99.98 | |
| d1a5za2 | 172 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 99.97 | |
| d1pzga2 | 174 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.97 | |
| d1ldma2 | 169 | Lactate dehydrogenase {Dogfish (Squalus acanthias) | 99.97 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 99.97 | |
| d2ldxa2 | 172 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 99.97 | |
| d1t2da2 | 165 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.97 | |
| d1ez4a2 | 171 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.97 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 99.97 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 99.97 | |
| d1hyha2 | 163 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.97 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 99.97 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 99.97 | |
| d1llca2 | 172 | Lactate dehydrogenase {Lactobacillus casei [TaxId: | 99.97 | |
| d1ldna2 | 168 | Lactate dehydrogenase {Bacillus stearothermophilus | 99.97 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 99.97 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.97 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.97 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.97 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.97 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.96 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.96 | |
| d1o6za2 | 161 | Malate dehydrogenase {Archaeon Haloarcula marismor | 99.96 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.96 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.96 | |
| d1mlda2 | 169 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.94 | |
| d2cmda2 | 167 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.92 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 99.89 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 99.88 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 99.86 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 99.85 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 99.41 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.32 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.31 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.21 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.18 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.14 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.11 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.1 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.1 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.06 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.06 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.05 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.04 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 98.97 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 98.93 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 98.9 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 98.9 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 98.84 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 98.84 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 98.81 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 98.81 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.8 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.76 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 98.75 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 98.75 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 98.72 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 98.7 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 98.61 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.6 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 98.58 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.55 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 98.53 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 98.52 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.48 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.45 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 98.35 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 98.34 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.3 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 98.27 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 98.26 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 98.24 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.17 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 98.17 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.13 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 98.12 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 98.07 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.06 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 98.05 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 98.05 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 98.03 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 98.03 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 98.02 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 98.02 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.0 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.98 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 97.98 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 97.96 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 97.95 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 97.94 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 97.92 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 97.92 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.92 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 97.91 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 97.91 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.9 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 97.88 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 97.88 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 97.87 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 97.87 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.85 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 97.84 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 97.83 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 97.83 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 97.83 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 97.81 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 97.81 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 97.8 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 97.8 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.77 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 97.75 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.75 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 97.74 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 97.73 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.72 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.72 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 97.69 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 97.68 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 97.68 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 97.66 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 97.63 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 97.63 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.63 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 97.62 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 97.61 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 97.61 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 97.6 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.6 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.58 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 97.58 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 97.57 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 97.54 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 97.5 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.47 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 97.41 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 97.41 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 97.41 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 97.4 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 97.37 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.24 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.22 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.19 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 97.19 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 97.18 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 97.15 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.14 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 97.11 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 97.04 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 96.96 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 96.91 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.91 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 96.84 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.71 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 96.67 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 96.64 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 96.59 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 96.57 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.55 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 96.53 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.52 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 96.51 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 96.51 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.47 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.33 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.31 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.26 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.18 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 96.16 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 96.15 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 96.11 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.11 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.09 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.09 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.03 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 96.01 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.96 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.9 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.88 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.83 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 95.76 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.59 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.56 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.52 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.46 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.44 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.39 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.33 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 95.25 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.02 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.97 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 94.93 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 94.93 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 94.92 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 94.91 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.9 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.81 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.7 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.64 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 94.63 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 94.58 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.54 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 94.5 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.44 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.39 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 94.37 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.35 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.34 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.33 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.31 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.29 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 94.25 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.15 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.1 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.98 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 93.96 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.94 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.89 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.86 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.82 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.81 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 93.69 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 93.59 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.57 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 93.55 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.54 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 93.53 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 93.44 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 93.43 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 93.39 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.35 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 93.32 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.19 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.11 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.09 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 92.98 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.95 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 92.94 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.88 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.84 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 92.76 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.74 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 92.73 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.59 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.57 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 92.36 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 92.1 | |
| d1up7a2 | 253 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 92.05 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 91.95 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.91 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 91.88 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.74 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 91.67 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 91.64 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 91.54 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.54 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 91.33 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 91.29 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 91.27 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 91.26 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 91.23 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 91.19 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.0 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 90.68 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 90.64 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 90.57 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 90.53 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 90.37 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 90.2 | |
| d1obba2 | 308 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 90.13 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 90.09 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 90.01 | |
| d1s6ya2 | 270 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 89.89 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 89.81 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 89.79 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 89.5 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 89.12 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 88.74 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 88.67 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 88.3 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 88.22 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 87.55 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 86.94 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 86.92 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 86.81 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 86.77 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 86.37 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 86.36 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 86.07 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 86.03 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 85.77 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 85.59 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 85.23 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 85.0 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 84.94 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 84.21 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 84.03 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 83.99 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 83.88 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 83.76 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 83.56 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 82.94 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 82.32 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 82.17 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 82.15 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 81.77 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 81.06 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 80.94 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 80.93 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 80.91 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 80.85 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 80.73 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 80.17 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 80.05 |
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=100.00 E-value=4.2e-40 Score=278.50 Aligned_cols=158 Identities=39% Similarity=0.654 Sum_probs=149.0
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHH
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAII 236 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~ 236 (320)
|.||++||++++|+++|++|.+|++++||||||++|||+||+++| +|.|+.+++.++.|..+++.+.+++++++|+
T Consensus 1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a~v----~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii 76 (188)
T d7mdha2 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI----DGRPVKEVIKRTKWLEEEFTITVQKRGGALI 76 (188)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTCCCHHHHHHHHHHHHHTHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeeccEe----eccchhhcccchhhhHHHHHHHHhhhHHHHH
Confidence 689999999999999999999999888899999999999999999 9999999999888888999999999999999
Q ss_pred hcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCc-cCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 237 KARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 237 ~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~-yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
+.||+++++++|.|+++++++|+.++++..++|++++++|+ ||+|+|+|||+||++| +|+|+++.+++||++|+++|+
T Consensus 77 ~~kg~s~~~s~A~A~~~~~~ai~~~~~~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l~ 156 (188)
T d7mdha2 77 QKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIK 156 (188)
T ss_dssp HHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHH
T ss_pred HhhcccchhhHHHHHHHHHHHHHcCCCCCceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999888877777899999999995 9998999999999999 999999988999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
.++.
T Consensus 157 ~S~~ 160 (188)
T d7mdha2 157 KSEA 160 (188)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=4.7e-37 Score=258.81 Aligned_cols=158 Identities=61% Similarity=0.928 Sum_probs=141.9
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhccc----chhhhhHHHHHHhhhh
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD----DAWLNGEFITTVQQRG 232 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~ 232 (320)
|.||++||++++|++||++|++|++++|||+||+++||+||+++| +|+|+.+++.+ +.|..+++.+.+++++
T Consensus 1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~s~vp~~S~a~v----~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 76 (179)
T d5mdha2 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKV----KLQAKEVGVYEAVKDDSWLKGEFITTVQQRG 76 (179)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEE----ECSSCEEEHHHHHCCHHHHHTHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCCcccccchhcee----cCcchhhhhhhccccchhhHHHHHHHHHhcc
Confidence 689999999999999999999999988889999999999999999 99998776543 3467789999999999
Q ss_pred HHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCC-ccCCCCceEEEEEEEEeCCeEEEecCCCCChhhhh
Q 020875 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPMS 311 (320)
Q Consensus 233 ~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g-~yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~~ 311 (320)
++|++.||+++++++|.|+++++..++...++..++|++++++| +||+|+|+|||+||++++|+|+.+.+++||++||+
T Consensus 77 ~~i~~~~~~ss~~~~a~a~~~~~~~i~~~~~~~~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l~L~~~E~~ 156 (179)
T d5mdha2 77 AAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSRE 156 (179)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCCCCCHHHHH
T ss_pred HhhhhccCcchHHHHHHHHHHHHHHHHhhcccCCceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCCCCCHHHHH
Confidence 99999999888888999999999888876677789999999997 89999999999999999666666668999999999
Q ss_pred cccCccc
Q 020875 312 FLSPIAF 318 (320)
Q Consensus 312 ~l~~~~~ 318 (320)
+|+.+|.
T Consensus 157 ~l~~Sa~ 163 (179)
T d5mdha2 157 KMDLTAK 163 (179)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5e-36 Score=251.29 Aligned_cols=158 Identities=47% Similarity=0.781 Sum_probs=136.9
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHH
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI 235 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (320)
+|.||++||++++|++++++|++|++++||||||++++|+||++++ +|.|+.++..+..+..+.+.+.++ ++..+
T Consensus 1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~s~vp~~S~~~v----~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 75 (173)
T d1y7ta2 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEV----DGRPALELVDMEWYEKVFIPTVAQ-RGAAI 75 (173)
T ss_dssp CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEE----TTEEGGGTSCHHHHHHTHHHHHHH-HHHHH
T ss_pred CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCccEEeeeeeeeE----cCccHHHhcccccccchhhhhhhh-hHHHH
Confidence 4889999999999999999999999988899999999999999999 999999988776555555555554 44455
Q ss_pred HhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEeCCeEEEecCCCCChhhhhcccC
Q 020875 236 IKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPMSFLSP 315 (320)
Q Consensus 236 ~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~~~l~~ 315 (320)
+..++.++++++|.+++.+++.++.+.++++++|+|++++|+||+|+++|||+||++++|+|+++.+++||++||++|+.
T Consensus 76 ~~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l~L~~~E~~~l~~ 155 (173)
T d1y7ta2 76 IQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEI 155 (173)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCCCCCHHHHHHHHH
T ss_pred HHHhccCchhhHHHHHHHHHHHHhcccCCCCceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCCCCCHHHHHHHHH
Confidence 55555566677889999888888886678899999999999999999999999999899999999889999999999988
Q ss_pred ccc
Q 020875 316 IAF 318 (320)
Q Consensus 316 ~~~ 318 (320)
++.
T Consensus 156 s~~ 158 (173)
T d1y7ta2 156 TAQ 158 (173)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Probab=100.00 E-value=8.1e-35 Score=243.38 Aligned_cols=156 Identities=48% Similarity=0.839 Sum_probs=141.6
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
.||++||++++|+++|++|++|++++||||||++++|+||++++ ++.|+.++..+..|..+++.+.+++++..+..
T Consensus 2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~s~vp~~S~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (171)
T d1b8pa2 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQI----DGASVKDMINDDAWNRDTFLPTVGKRGAAIID 77 (171)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEE----TTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHH
T ss_pred cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCCcEEeeeeccee----ecccchhhhhhhcchhhhHHHHHHHHHHHHHH
Confidence 58999999999999999999999988899999999999999999 99999999888777778888888888888888
Q ss_pred cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEeCCeEEEecCCCCChhhhhcccCcc
Q 020875 238 ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGTDAILYPMSFLSPIA 317 (320)
Q Consensus 238 ~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~~G~~~~~~~~~L~~~E~~~l~~~~ 317 (320)
.++.+++++++.+++..+.+|+.+ +++.++|+|++++|+||+|+++|||+||++++|+|+++.+++||++||++|+.++
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~i~~-~~~~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l~L~~~e~~~l~~s~ 156 (171)
T d1b8pa2 78 ARGVSSAASAANAAIDHIHDWVLG-TAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTL 156 (171)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHH
T ss_pred HHhhhhhhhhhHHHHHHHHHHHhC-CCccceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 888888877777777788888886 6789999999999999999999999999999777888779999999999999876
Q ss_pred c
Q 020875 318 F 318 (320)
Q Consensus 318 ~ 318 (320)
.
T Consensus 157 ~ 157 (171)
T d1b8pa2 157 N 157 (171)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=100.00 E-value=1.5e-33 Score=235.87 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=134.1
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccch-----hhhhHHHHHHh
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA-----WLNGEFITTVQ 229 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~ 229 (320)
+||.||++|+++++|+++|+++++|+++ |||+||++|||+||++++ +|.|+.+++.+.. +..+++.++++
T Consensus 1 ~GT~LDs~R~~~~lA~~lgv~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~i~~~~~ 75 (172)
T d1i0za2 1 SGCNLDSARFRYLMAEKLGIHPSSCHGW-ILGEHGDSSVAVWSGVNV----AGVSLQELNPEMGTDNDSENWKEVHKMVV 75 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCBCC-EEBCSSTTCEECGGGCEE----TTEEHHHHCTTTTSSSCSSCTHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCcCHHHceEE-EEccCCCcccccHhhcee----CCeeHHHhhhhhccchhHHHHHHHHHHhc
Confidence 4799999999999999999999999877 599999999999999999 9999998876532 24578899999
Q ss_pred hhhHHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChh
Q 020875 230 QRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILY 308 (320)
Q Consensus 230 ~~~~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~ 308 (320)
+++.+++..++.+.+ ++|.++++++. +++. +++.++|++++++|+||+++++|||+||+++ +|+++++ +++||++
T Consensus 76 ~~~~~~~~~~~~s~~-a~a~~~~~~~~-~~~~-~~~~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~-~l~L~~~ 151 (172)
T d1i0za2 76 ESAYEVIKLKGYTNW-AIGLSVADLIE-SMLK-NLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVI-NQKLKDD 151 (172)
T ss_dssp HHHHHHHHHHSSCCH-HHHHHHHHHHH-HHHT-TCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEEC-CCCCCHH
T ss_pred cceEEeeecccccch-HHHHHHHHHHH-HHhc-CCCcccccceeccCcCCCcCCEEEEEEEEecCCcEEEEe-CCCCCHH
Confidence 999999999997765 45667765544 5554 6789999999999999999999999999999 7766666 7999999
Q ss_pred hhhcccCccc
Q 020875 309 PMSFLSPIAF 318 (320)
Q Consensus 309 E~~~l~~~~~ 318 (320)
||++|+++|.
T Consensus 152 E~~~l~~Sa~ 161 (172)
T d1i0za2 152 EVAQLKKSAD 161 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=100.00 E-value=3e-33 Score=233.56 Aligned_cols=152 Identities=21% Similarity=0.197 Sum_probs=133.6
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhccc------chhhhhHHHHHHhh
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD------DAWLNGEFITTVQQ 230 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~ 230 (320)
|.||++|+++++|+++|+++++|+++ ||||||++|||+||++++ +|.|+.+++.. +.|..+++.+++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~ 75 (170)
T d1llda2 1 TNLDSARLRFLIAQQTGVNVKNVHAY-IAGEHGDSEVPLWESATI----GGVPMSDWTPLPGHDPLDADKREEIHQEVKN 75 (170)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEECC-EEBSSSTTCEECTTSCEE----TTEEGGGCCCCTTCCCCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCCcccchhhccc----CCCchhhhcccccccccchhhHHHHHHHHhh
Confidence 68999999999999999999999988 589999999999999999 99999987653 23556889999999
Q ss_pred hhHHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhh
Q 020875 231 RGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYP 309 (320)
Q Consensus 231 ~~~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E 309 (320)
++++|++.||.+.+. +|.+++.++..++. +++.+++++++++|+||. .++|||+||+++ +|+++++ +++||++|
T Consensus 76 ~g~~i~~~kg~t~~~-~a~~~~~~~~~i~~--~~~~~~~~~~~~~~~~g~-~~i~~s~P~~lg~~Gv~~i~-~l~L~~~E 150 (170)
T d1llda2 76 AAYKIINGKGATNYA-IGMSGVDIIEAVLH--DTNRILPVSSMLKDFHGI-SDICMSVPTLLNRQGVNNTI-NTPVSDKE 150 (170)
T ss_dssp HHHHHHTSCCSCCHH-HHHHHHHHHHHHHT--TCCEEEEEEEECSSBTTB-CSSEEEEEEEEETTEEECCS-CCCCCHHH
T ss_pred hhhHHHhhhccchhh-hHHHHHHHHHHHHc--CCCceeeeeccccCccCC-CCeeEeeccEEcCCeeEEEe-cCCCCHHH
Confidence 999999999988764 46777766665444 578999999999999999 699999999999 8888887 79999999
Q ss_pred hhcccCccc
Q 020875 310 MSFLSPIAF 318 (320)
Q Consensus 310 ~~~l~~~~~ 318 (320)
|++|+++|.
T Consensus 151 ~~~l~~sa~ 159 (170)
T d1llda2 151 LAALKRSAE 159 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.1e-33 Score=228.30 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=120.1
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHH
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI 235 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (320)
||.||++||++.+++....+.. ++++ +||||++|||+||.+++ +|.|. .+++.+++++++++|
T Consensus 1 Gt~LDsaR~r~~l~~~~~~~v~--~a~V-iGeHGds~vp~~S~~~i----~g~~~----------~~~i~~~v~~~g~eI 63 (152)
T d1ojua2 1 GNQLDSQRLKERLYNAGARNIR--RAWI-IGEHGDSMFVAKSLADF----DGEVD----------WEAVENDVRFVAAEV 63 (152)
T ss_dssp SHHHHHHHHHHHHHHTTCBSCC--CCCE-EBCSSTTCEECGGGCCC----BSCCC----------HHHHHHHHHTTHHHH
T ss_pred CCccHHHHHHHHHHccCCCCcc--eeEE-EecCCCccccccccccc----cCccc----------hhHhHHHHHHHHHHh
Confidence 5899999999999877654332 7775 89999999999999999 77553 368999999999999
Q ss_pred HhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 236 IKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 236 ~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
++.||+|.| ++|.++++++. +|+. |+++++|+|++++|+||+ +|+|+|+||+|| +|+ +++ +++||++||++|+
T Consensus 64 i~~kG~t~~-gia~a~~~iv~-aIl~-d~~~v~pvs~~l~geyG~-~dv~lsvP~vig~~Gv-ei~-~l~L~~~E~~~l~ 137 (152)
T d1ojua2 64 IKRKGATIF-GPAVAIYRMVK-AVVE-DTGEIIPTSMILQGEYGI-ENVAVGVPAKLGKNGA-EVA-DIKLSDEEIEKLR 137 (152)
T ss_dssp HHHHSSCCH-HHHHHHHHHHH-HHHT-TCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEE-EEC-CCCCCHHHHHHHH
T ss_pred hhhccceec-cHHHHHHHHHH-HHHh-cCCCceeeeEEeccccCC-CCEEEEeEEEECCCce-EEE-cCCCCHHHHHHHH
Confidence 999998865 56888887655 5665 689999999999999999 799999999999 896 687 7999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
++|.
T Consensus 138 ~Sa~ 141 (152)
T d1ojua2 138 NSAK 141 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-33 Score=235.15 Aligned_cols=154 Identities=21% Similarity=0.268 Sum_probs=129.7
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHH
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI 235 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (320)
||.||++||++++|++||+++.+|+++ ||||||++|||+||++++ +|+|+.++.....+..+++.++++++++.+
T Consensus 2 GT~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (168)
T d1hyea2 2 GTHLDSLRFKVAIAKFFGVHIDEVRTR-IIGEHGDSMVPLLSATSI----GGIPIQKFERFKELPIDEIIEDVKTKGEQI 76 (168)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGEECC-EEECSSTTEEECGGGCEE----TTEEGGGCGGGGGCCHHHHHHHHHHHTTSC
T ss_pred CchHHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCccccchhheeE----CCEecccccccchhhhhhHHHHHhhhHHHH
Confidence 689999999999999999999999988 589999999999999999 999999887766666688999999999999
Q ss_pred HhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 236 IKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 236 ~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
++.|+.+++.+ +.+++.++..++. +++.++++++++.|+|+.++|+|||+||++| +|+++++ +++||++||++|+
T Consensus 77 ~~~k~~~~~~~-a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~-~l~Ls~~E~~~l~ 152 (168)
T d1hyea2 77 IRLKGGSEFGP-AAAILNVVRCIVN--NEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVV-SIELDKDEIIAFR 152 (168)
T ss_dssp CC------CCH-HHHHHHHHHHHHT--TCCEEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred HHhccCccccc-hhhhhHHHHhhhc--cCCCeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEe-cCCCCHHHHHHHH
Confidence 99988776654 5566656665554 5679999999999998777999999999999 8999998 6999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
++|.
T Consensus 153 ~Sa~ 156 (168)
T d1hyea2 153 KSAE 156 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=2.3e-33 Score=234.00 Aligned_cols=152 Identities=25% Similarity=0.251 Sum_probs=129.5
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccc-----hhhhhHHHHHHhhh
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD-----AWLNGEFITTVQQR 231 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~ 231 (320)
|.||++|+++++|+++|++|.+|++++ |||||++|+|+||++++ +|.|+.+++.+. .+..+++.++++++
T Consensus 1 T~LDs~R~~~~la~~lgv~~~~V~~~V-iG~Hg~t~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (169)
T d1y6ja2 1 TVLDSIRFRYLLSEKLGVDVKNVHGYI-IGEHGDSQLPLWSCTHI----AGKNINEYIDDPKCNFTEEDKKKIAEDVKTA 75 (169)
T ss_dssp THHHHHHHHHHHHTTTTCCTTTEECCE-EBCSSSSCEECCTTCEE----TTBCSCCC-----------CCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHceEEE-EccCCCCCccCeeeccc----CchhHHHHHHHhhhhhhHHHHHHHHHHHhhh
Confidence 689999999999999999999999885 89999999999999999 999999988764 23567899999999
Q ss_pred hHHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhh
Q 020875 232 GAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPM 310 (320)
Q Consensus 232 ~~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~ 310 (320)
++++++.++.+.|. +|.++++++. ++.. +++.++|++++++|+||++ ++|||+||+++ +|+++++ +++||++||
T Consensus 76 ~~~i~~~~~s~~~a-~a~~~~~~~~-~i~~-~~~~~~~~~~~~~g~yg~~-~i~~s~Pv~lg~~Gv~~i~-~l~Ls~~E~ 150 (169)
T d1y6ja2 76 GATIIKNKGATYYG-IAVSINTIVE-TLLK-NQNTIRTVGTVINGMYGIE-DVAISLPSIVNSEGVQEVL-QFNLTPEEE 150 (169)
T ss_dssp HHHHHHHTSCCCHH-HHHHHHHHHH-HHHH-TCCCEECCEEEECSBTTBC-SEEEECCEEEETTEEEECC-CCCCCHHHH
T ss_pred hhhhhhhhhhhhhH-HHHHHHHHHH-Hhcc-CCCCceeeeeeeccccCCc-ccceeeeeEEcCCcEEEEe-cCCCCHHHH
Confidence 99999999877654 4677765555 4554 5789999999999999995 99999999999 8888887 799999999
Q ss_pred hcccCccc
Q 020875 311 SFLSPIAF 318 (320)
Q Consensus 311 ~~l~~~~~ 318 (320)
++|+.++.
T Consensus 151 ~~l~~s~~ 158 (169)
T d1y6ja2 151 EALRFSAE 158 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=100.00 E-value=3.6e-32 Score=226.96 Aligned_cols=153 Identities=44% Similarity=0.636 Sum_probs=142.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++.||+|+||+|+||+++++.|++++++|.++..+++|+|++++.+.+++..+|+.|++.+....+..+++.+++++|+|
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 46799999999999999999999999998777789999999877778899999999998887888888899999999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~ 156 (320)
+||+++|.|++++++|.|++..|+++++++++++.++++++++++++|||+|++|++++++++++|++||.++
T Consensus 103 vVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia~k~a~~ip~~~i~~m 175 (175)
T d7mdha1 103 WALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL 175 (175)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC
T ss_pred eEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHHHHHCCCCCHHHEeCC
Confidence 9999999999999999999999999999999999999866899999999999999999998899999998764
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=100.00 E-value=3.3e-33 Score=231.62 Aligned_cols=149 Identities=21% Similarity=0.290 Sum_probs=130.6
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
+||++||++++|+++|++|.+|+++ ||||||++++|+||++++ +|+|+.+++.++. .+++.++++++|++|++
T Consensus 3 ~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~s~vp~~s~~~i----~g~~~~~~~~~~~--~~~~~~~v~~~g~~ii~ 75 (163)
T d1guza2 3 VLDAARFRSFIAMELGVSMQDINAC-VLGGHGDAMVPVVKYTTV----AGIPISDLLPAET--IDKLVERTRNGGAEIVE 75 (163)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEECC-EEECSGGGEEECGGGCEE----TTEEHHHHSCHHH--HHHHHHHHHTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCCcccCHhhccc----CCccccccCCHHH--HHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999988 489999999999999999 9999999876543 47899999999999987
Q ss_pred c--CCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 238 A--RKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 238 ~--kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
. ||.+. ++++.++++ +..++++ +++.++|++++++|+||+ +++|||+|++++ +|+++++ +++||++||++|+
T Consensus 76 ~~~kgsa~-~a~~~~~~~-~~~~i~~-~~~~~~~~~~~~~~~~g~-~~~~~s~P~~lg~~Gv~~i~-~l~Ls~~E~~~l~ 150 (163)
T d1guza2 76 HLKQGSAF-YAPASSVVE-MVESIVL-DRKRVLPCAVGLEGQYGI-DKTFVGVPVKLGRNGVEQIY-EINLDQADLDLLQ 150 (163)
T ss_dssp HHSSSCCC-HHHHHHHHH-HHHHHHT-TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred HhcCCCcc-hhHHHHHHH-HHHheec-cCCCEEEEeeeeccccCC-CCcEEEEeeEEcCCeeEEEe-cCCCCHHHHHHHH
Confidence 4 44444 455666664 5667776 688999999999999999 699999999999 9999999 7999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
+++.
T Consensus 151 ~sa~ 154 (163)
T d1guza2 151 KSAK 154 (163)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.98 E-value=6.5e-33 Score=230.09 Aligned_cols=149 Identities=21% Similarity=0.304 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHHHh
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~ 237 (320)
.||++||++++|++||++|.+|+++ |||+||+++||+||++++ +|.|+.+++.++ ..+++.+++++++++|++
T Consensus 3 ~LD~~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~v~~~s~~~i----~g~~~~~~~~~~--~~~~~~~~v~~~g~~ii~ 75 (164)
T d1uxja2 3 VLDAARYRTFIAMEAGVSVKDVQAM-LMGGHGDEMVPLPRFSTI----SGIPVSEFIAPD--RLAQIVERTRKGGGEIVN 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEC-CEECSGGGEECCGGGEEE----TTEEGGGTSCHH--HHHHHHHHHHTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCceeeeeeeeec----CCCchhhccchh--hHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999988 589999999999999999 999999887544 458899999999999976
Q ss_pred c--CCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 238 A--RKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 238 ~--kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
. ||.+ +++++.++++ |.+|+++ +++.++|++++++|+||+ +++|||+||++| +|+++++ +++||++||++|+
T Consensus 76 ~~~kgs~-~~a~a~a~~~-i~~~i~~-~~~~~~~~~~~~~g~ygi-~~~~~s~P~~ig~~Gv~~v~-~l~L~~~E~~~l~ 150 (164)
T d1uxja2 76 LLKTGSA-YYAPAAATAQ-MVEAVLK-DKKRVMPVAAYLTGQYGL-NDIYFGVPVILGAGGVEKIL-ELPLNEEEMALLN 150 (164)
T ss_dssp HHSSSCC-CHHHHHHHHH-HHHHHHT-TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred HHhcCcc-cchHHHHHHH-HHHHHhC-CCCceeeeeeeeccccCC-CCceEEECeEEeCCeeEEEe-CCCCCHHHHHHHH
Confidence 4 4444 4566677764 6667876 678999999999999999 699999999999 8988888 7999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
+++.
T Consensus 151 ~s~~ 154 (164)
T d1uxja2 151 ASAK 154 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.98 E-value=3.2e-32 Score=223.47 Aligned_cols=154 Identities=53% Similarity=0.856 Sum_probs=139.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
++|+||+||||+|+||+++++.|+++++++.+...+++|+|.+++++++++..+|+.|...+....+....+.+++++|+
T Consensus 1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d5mdha1 1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL 80 (154)
T ss_dssp CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCc
Confidence 57999999998899999999999999988776778999999987777778888888888766677788888999999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~ 156 (320)
|+||+++|.|++++++|++++..|+++++++++.+.+++++++++|++|||+|++|++++++++++|++||.++
T Consensus 81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~~k~s~g~P~~~v~~m 154 (154)
T d5mdha1 81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCL 154 (154)
T ss_dssp SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC
T ss_pred eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHHHHHcCCCCHHHEeCC
Confidence 99999999999999999999999999999999999999856677889999999999999998669999998763
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.98 E-value=7.2e-32 Score=217.31 Aligned_cols=142 Identities=23% Similarity=0.300 Sum_probs=126.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
.||+|+||+|+||+++++.|+.+++.+ |++|+|++..+++++++++||+|... +..+..+++..+++++|||+|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~-----el~L~Di~~~~~~~~g~a~Dl~~~~~-~~~~~~i~~~~~~~~~~aDiV 74 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYEDTAGSDVV 74 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCS-----EEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGGGGTTCSEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCC-----EEEEEecCCcccccceeecchhhccc-ccCCceEeeCCHHHhhhcCEE
Confidence 499999988999999999999999875 99999986555678899999999653 334445555668899999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~ 155 (320)
|++||.|++++++|.+++..|+++++++++.+.+++ |+++++++|||+|+||+++++. +|||++|++|
T Consensus 75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNPvDvmt~~~~k~-sg~~~~rViG 142 (142)
T d1o6za1 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDLLNRHLYEA-GDRSREQVIG 142 (142)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHHHHHHHHHH-SSSCGGGEEE
T ss_pred EEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecChHHHHHHHHHHH-HCcCcccccC
Confidence 999999999999999999999999999999999999 8999999999999999999996 8999999865
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=1e-31 Score=220.39 Aligned_cols=154 Identities=55% Similarity=0.800 Sum_probs=139.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|+ +||||+|+||+|+||+++++.|+++++++..+...+.|+|.+.+.+++.+..+|+.|...+....+....+.+++++
T Consensus 1 m~-~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
T d1y7ta1 1 MK-APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK 79 (154)
T ss_dssp CC-CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT
T ss_pred CC-CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcc
Confidence 55 78999999988999999999999999887655566778888777778888999999988777788888899999999
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~ 155 (320)
|+|+||+++|.+++++++|.+++..|+++++++++.+.++++|+++++++|||+|++|++++++++|||++||+.
T Consensus 80 ~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a~k~asg~p~~rvia 154 (154)
T d1y7ta1 80 DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTA 154 (154)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEE
T ss_pred cccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHHHHHcCCCcHHhccC
Confidence 999999999999999999999999999999999999999986689999999999999999988779999999863
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=3.9e-32 Score=227.14 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=133.2
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccc----hhhhhHHHHHHhhh
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD----AWLNGEFITTVQQR 231 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~ 231 (320)
||.||++||++++|+++|++|.+|+++ |||+||++|+|+||++++ +|.|+.+++... ....+++.+.++.+
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~t~vp~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (172)
T d1a5za2 1 GTVLDTARLRTLIAQHCGFSPRSVHVY-VIGEHGDSEVPVWSGAMI----GGIPLQNMCQVCQKCDSKILENFAEKTKRA 75 (172)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHCcCHHHeEEE-EEecCCCCcccchhhccc----CCcchhhhhhccccccHHHhhhhHHHHhcc
Confidence 689999999999999999999999988 589999999999999999 999999987643 22356788889999
Q ss_pred hHHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhh
Q 020875 232 GAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPM 310 (320)
Q Consensus 232 ~~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~ 310 (320)
+++++..|+.+.+. +|.+++.++..++. +++.++|++++++|+||. +++|||+||++| +|+++++ +++||++||
T Consensus 76 ~~~i~~~~~~~~~~-~a~a~~~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~v~~s~P~~lg~~Gv~~v~-~l~Ls~~E~ 150 (172)
T d1a5za2 76 AYEIIERKGATHYA-IALAVADIVESIFF--DEKRVLTLSVYLEDYLGV-KDLCISVPVTLGKHGVERIL-ELNLNEEEL 150 (172)
T ss_dssp HHHHHHHHSCCCHH-HHHHHHHHHHHHHT--TCCEEEEEEEEESSBTTB-CSEEEEEEEEEETTEEEEEC-CCCCCHHHH
T ss_pred ceeEeeccccchhh-HHHHHHHHHHHHHh--hcccceeeeccccccccc-CCeeEeeeEEEcCCceEEEe-CCCCCHHHH
Confidence 99999999877764 46777766665554 578999999999999998 699999999999 8999998 799999999
Q ss_pred hcccCccc
Q 020875 311 SFLSPIAF 318 (320)
Q Consensus 311 ~~l~~~~~ 318 (320)
++|+.++.
T Consensus 151 ~~l~~sa~ 158 (172)
T d1a5za2 151 EAFRKSAS 158 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.97 E-value=2.1e-32 Score=229.17 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=124.2
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh---hhhHHHHHHhhhh
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW---LNGEFITTVQQRG 232 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~ 232 (320)
||+||++|+++++|+++|++|++|+++ ||||||++|+|+||++++ +|.|+.+++.+..| ...+..+..+.++
T Consensus 1 ~c~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~t~vp~~S~~~i----~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g 75 (174)
T d1pzga2 1 ACMLDSGRFRRYVADALSVSPRDVQAT-VIGTHGDCMVPLVRYITV----NGYPIQKFIKDGVVTEKQLEEIAEHTKVSG 75 (174)
T ss_dssp CHHHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhCcCHHHcEEE-EEccCCCccccceeeeeE----CCEechhhccccchhhhhhhhhhheeeccc
Confidence 689999999999999999999999987 599999999999999999 99999988765433 2334444455556
Q ss_pred HHHHh--cCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhh
Q 020875 233 AAIIK--ARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYP 309 (320)
Q Consensus 233 ~~i~~--~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E 309 (320)
..+.. .+|.+. ++++.++++ +.++++. +++.++|++++++|+||++ ++|||+||++| +|+++++ +++||++|
T Consensus 76 ~~~~~~~~~gst~-~~~a~a~~~-~~~~i~~-~~~~~~~~s~~~~~~yGi~-~v~~s~Pv~ig~~Gi~~v~-~l~l~~~E 150 (174)
T d1pzga2 76 GEIVRFLGQGSAY-YAPAASAVA-MATSFLN-DEKRVIPCSVYCNGEYGLK-DMFIGLPAVIGGAGIERVI-ELELNEEE 150 (174)
T ss_dssp HHHHHHHSSSCCC-HHHHHHHHH-HHHHHHT-TCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHH
T ss_pred eeEeeeecccchh-hhhHHHHHH-HHHhhcc-cCCceEEeeeccccccCCC-CceeeeeeEEcCCcEEEEe-CCCCCHHH
Confidence 55544 555554 455677765 4556765 6889999999999999995 89999999999 7877666 79999999
Q ss_pred hhcccCccc
Q 020875 310 MSFLSPIAF 318 (320)
Q Consensus 310 ~~~l~~~~~ 318 (320)
|++|+.++.
T Consensus 151 ~~~l~~s~~ 159 (174)
T d1pzga2 151 KKQFQKSVD 159 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988763
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Probab=99.97 E-value=2.7e-32 Score=227.44 Aligned_cols=155 Identities=16% Similarity=0.104 Sum_probs=131.0
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccc--hhhhhHHHHHHhhhh
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD--AWLNGEFITTVQQRG 232 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~ 232 (320)
+||.||++|+++++|++||++|++|+++ |||+||++|+|+||++++ ++.|+.++...+ .+...++.+..+.++
T Consensus 1 sGT~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~v~~~s~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (169)
T d1ldma2 1 SGCNLDSARFRYLMGERLGVHSCSCHGW-VIGEHGDSVPSVWSGMNV----ASIKLHPLDGTNKDKQDWKKLHKDVVDSA 75 (169)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCBCC-BCBCSSTTCCBCGGGCEE----TTEESHHHHSSTTTTTTTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCccchhhhhhccc----CCcchHHhhcccchhhhcceeEEEecCce
Confidence 4799999999999999999999999988 589999999999999999 999998876543 223456666777788
Q ss_pred HHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhh
Q 020875 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMS 311 (320)
Q Consensus 233 ~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~ 311 (320)
.++...++.+.+ ++|.++++++ .++.. +++.++|++++++|+||++.++|||+||++| +|+++++ +++||++||+
T Consensus 76 ~~~~~~~~s~~~-a~a~~~~~~~-~~~~~-~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~-~l~L~~~E~~ 151 (169)
T d1ldma2 76 YEVIKLKGYTSW-AIGLSVADLA-ETIMK-NLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIV-KMKLKPNEEQ 151 (169)
T ss_dssp HHHHHHHSSCCH-HHHHHHHHHH-HHHHT-TCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEEC-CCCCCHHHHH
T ss_pred EEEeccccchhh-HHHHHHhhhh-heecC-CCCceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEe-cCCCCHHHHH
Confidence 888888886654 5567776555 45665 6789999999999999999999999999999 7877787 7999999999
Q ss_pred cccCccc
Q 020875 312 FLSPIAF 318 (320)
Q Consensus 312 ~l~~~~~ 318 (320)
+|++++.
T Consensus 152 ~l~~s~~ 158 (169)
T d1ldma2 152 QLQKSAT 158 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=99.97 E-value=2.3e-31 Score=214.82 Aligned_cols=141 Identities=22% Similarity=0.370 Sum_probs=125.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC-cceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL-KGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~-~~v~~~~~~~~al~~aD 83 (320)
|.||+|||| |+||+++++.|+.+++.+ |++|+|+++ ++++|+++||+|...... ..+... +.+++++|||
T Consensus 1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~-----ElvL~D~~~--~~~~g~a~Dl~~a~~~~~~~~i~~~-~~~~~~~daD 71 (143)
T d1llda1 1 PTKLAVIGA-GAVGSTLAFAAAQRGIAR-----EIVLEDIAK--ERVEAEVLDMQHGSSFYPTVSIDGS-DDPEICRDAD 71 (143)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCS-----EEEEECSSH--HHHHHHHHHHHHTGGGSTTCEEEEE-SCGGGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCc-----EEEEEEecc--ccchhHHHHHHhccccCCCceeecC-CCHHHhhCCc
Confidence 579999995 999999999999999875 999999974 678999999999865443 334334 4578899999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~ 156 (320)
+||++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|+||+++++. +++|++|++|.
T Consensus 72 vVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvDvmt~~~~~~-sg~p~~rViG~ 142 (143)
T d1llda1 72 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVDIATHVAQKL-TGLPENQIFGS 142 (143)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHH-HTCCTTSEEEC
T ss_pred EEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeCCchHHHHHHHHHH-HCCChhhccCC
Confidence 99999999999999999999999999999999999998 8999999999999999999996 89999997663
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=6.3e-32 Score=225.76 Aligned_cols=155 Identities=18% Similarity=0.133 Sum_probs=132.2
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccc-----hhhhhHHHHHHh
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD-----AWLNGEFITTVQ 229 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~ 229 (320)
+||.||+.|+++++|+++|++|++|+++ |||+||++|+|+||++++ +|.|+.+++.+. .+..+++.+..+
T Consensus 1 tGT~LD~~R~~~~vA~~l~v~~~~V~~~-ViG~Hs~~~ip~~s~~~v----~g~~~~~~~~~~~~~~~~~~~~~i~~~~~ 75 (172)
T d2ldxa2 1 SGCNLDSARFRYLIGEKLGVNPTSCHGW-VLGEHGDSSVPIWSGVNV----AGVTLKSLNPAIGTDKNKQHWKNVHKQVV 75 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCTTSSCCC-EEECSSSCEEECGGGCBS----SCSSSSBSTTTCSCSSSSSSCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCcCHHHcEEE-EEcCCCCccccceeccee----cCcchhhHHHHhhhhhhhhhhhhhhhhhc
Confidence 4799999999999999999999999987 589999999999999999 999998876542 123466888888
Q ss_pred hhhHHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChh
Q 020875 230 QRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILY 308 (320)
Q Consensus 230 ~~~~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~ 308 (320)
.++..++..|+.+.+. +|.+++.++.. +.. +++.++|++++++|+||+++++|||+||++| +|+++++ +++||++
T Consensus 76 ~~~~~~~~~k~~s~~~-~a~~~~~~~~~-~~~-~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~-~l~L~~~ 151 (172)
T d2ldxa2 76 EGGYEVLDMKGYTSWA-IGLSVTDLARS-ILK-NLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFV-KVNMTAE 151 (172)
T ss_dssp HHHHHHHHHHSSCCHH-HHHHHHHHHHH-HHT-TCCEEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEE-CCCCCHH
T ss_pred cceeehhhcccchhHH-HHHHHhHHHHh-hcC-CCccceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEe-cCCCCHH
Confidence 8899999998877664 45666655554 444 5789999999999999999999999999999 7888887 7999999
Q ss_pred hhhcccCccc
Q 020875 309 PMSFLSPIAF 318 (320)
Q Consensus 309 E~~~l~~~~~ 318 (320)
|+++|++++.
T Consensus 152 E~~~l~~s~~ 161 (172)
T d2ldxa2 152 EEGLLKKSAD 161 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=1.4e-31 Score=217.84 Aligned_cols=146 Identities=21% Similarity=0.310 Sum_probs=131.1
Q ss_pred CCCC-CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc
Q 020875 1 MAKE-PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC 79 (320)
Q Consensus 1 m~~~-~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al 79 (320)
|+++ ..||+|+|| |+||+++++.|+.+++.+ |++|+|+++ ++++++++||+|...+....+...++.++++
T Consensus 1 m~~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~-----el~L~Di~~--~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l 72 (148)
T d1ldna1 1 MKNNGGARVVVIGA-GFVGASYVFALMNQGIAD-----EIVLIDANE--SKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC 72 (148)
T ss_dssp CTTTTSCEEEEECC-SHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHHHTTSSSSCCEEEECCGGGT
T ss_pred CCCCCCCeEEEECc-CHHHHHHHHHHHhcCCCc-----eEEEEeecc--ccccchhccHhhCccccCCCeEEEECCHHHh
Confidence 5554 579999995 999999999999999864 999999974 6789999999998766655666666678999
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe
Q 020875 80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~ 156 (320)
+|||+||+++|.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|++|++++++ +|+|++|++|.
T Consensus 73 ~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd~~t~~~~k~-sg~p~~rViG~ 147 (148)
T d1ldna1 73 RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILTYATWKF-SGLPHERVIGS 147 (148)
T ss_dssp TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHH-HTCCGGGEEEC
T ss_pred ccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccHHHHHHHHHH-HCcChhheecC
Confidence 999999999999999999999999999999999999999999 8999999999999999999997 89999997663
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.97 E-value=9.5e-32 Score=223.26 Aligned_cols=151 Identities=19% Similarity=0.152 Sum_probs=130.3
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh---hhhHHHHHHhhhhHH
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW---LNGEFITTVQQRGAA 234 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~ 234 (320)
.||+.|+++++|+++|++|++|+++ |||+||++|+|+||++++ +|.|+.+...+..| ...++.+.+++++++
T Consensus 2 ~LD~~R~~~~la~~lgv~~~~V~~~-ViG~Hg~~~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (165)
T d1t2da2 2 VLDTSRLKYYISQKLNVCPRDVNAH-IVGAHGNKMVLLKRYITV----GGIPLQEFINNKLISDAELEAIFDRTVNTALE 76 (165)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEECGGGCEE----TTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEEE-EEcCCCCCcccceeeccc----CCcchhhhcccchhhhhhhhhhhhhhhhhhHH
Confidence 5899999999999999999999988 589999999999999999 99999887765433 235678888899999
Q ss_pred HHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcc
Q 020875 235 IIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFL 313 (320)
Q Consensus 235 i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l 313 (320)
+++.|+.+.+ ++|.+++.++. +++. +.+.++|+|++++|+||+ +++|||+||+++ +|+++++ +++||++||++|
T Consensus 77 v~~~~~~~~~-a~a~a~~~~~~-~i~~-~~~~~~~~~v~~~g~yg~-~~v~~s~Pv~lg~~Gv~~i~-~l~L~~~E~~~L 151 (165)
T d1t2da2 77 IVNLHASPYV-APAAAIIEMAE-SYLK-DLKKVLICSTLLEGQYGH-SDIFGGTPVVLGANGVEQVI-ELQLNSEEKAKF 151 (165)
T ss_dssp HHHHTSSCCH-HHHHHHHHHHH-HHHT-TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHH
T ss_pred Hhhhccceee-chhHHHHHHHH-HHhh-ccccceeeeecccccccc-CCeeEeeeEEEcCCceEEEe-CCCCCHHHHHHH
Confidence 9999997765 45677775554 5554 678999999999999998 699999999999 8999998 699999999999
Q ss_pred cCccc
Q 020875 314 SPIAF 318 (320)
Q Consensus 314 ~~~~~ 318 (320)
++++.
T Consensus 152 ~~s~~ 156 (165)
T d1t2da2 152 DEAIA 156 (165)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87753
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.97 E-value=7.6e-32 Score=225.16 Aligned_cols=152 Identities=21% Similarity=0.318 Sum_probs=131.5
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhh---hhHHHHHHhhhhH
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWL---NGEFITTVQQRGA 233 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~ 233 (320)
|.||+.|+++++|+++|++|.+|+++ |||+||++|+|+||++++ +|.|+.+++.+..|. ..++.+.++.+++
T Consensus 1 T~LD~~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~t~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (171)
T d1ez4a2 1 TSLDSSRLRVALGKQFNVDPRSVDAY-IMGEHGDSEFAAYSTATI----GTRPVRDVAKEQGVSDDDLAKLEDGVRNKAY 75 (171)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEECC-EESSSSSSCEECGGGCEE----TTEEHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEEE-EEccCCCccccccccccc----CCccceeecccccccchhhhhheeehhhhhH
Confidence 68999999999999999999999988 589999999999999999 999999887654332 3557778888999
Q ss_pred HHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhc
Q 020875 234 AIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSF 312 (320)
Q Consensus 234 ~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~ 312 (320)
++++.||.+.+ ++|.++++++ .++.+ +++.++|++++++|+||+ +++|||+||+++ +|+++++ +++||++||++
T Consensus 76 ~i~~~k~s~~~-a~a~~~~~~~-~~i~~-~~~~~~~~~~~~~~~~g~-~~~~~S~Pv~lg~~Gv~~v~-~l~Ls~~E~~~ 150 (171)
T d1ez4a2 76 DIINLKGATFY-GIGTALMRIS-KAILR-DENAVLPVGAYMDGQYGL-NDIYIGTPAIIGGTGLKQII-ESPLSADELKK 150 (171)
T ss_dssp HHHHHHSCCCH-HHHHHHHHHH-HHHHT-TCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHH
T ss_pred HHHHhhhhHhH-HHHHHHHHHH-HHHhc-cCCceEEEEEeeccccCc-cceeeeEEEEEcCCcEEEEe-CCCCCHHHHHH
Confidence 99999987765 5567777554 56665 678999999999999999 799999999999 8888887 69999999999
Q ss_pred ccCccc
Q 020875 313 LSPIAF 318 (320)
Q Consensus 313 l~~~~~ 318 (320)
|++++.
T Consensus 151 l~~s~~ 156 (171)
T d1ez4a2 151 MQDSAA 156 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=4.5e-31 Score=213.14 Aligned_cols=140 Identities=27% Similarity=0.409 Sum_probs=126.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--CcceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~al~~aD 83 (320)
|||+|+| +|+||+++++.|+.+++++ |++|+|+++ ++++|+++||+|..... ...+..+.+ +++++|+|
T Consensus 1 MKI~IIG-aG~VG~~~a~~l~~~~~~~-----elvL~Di~~--~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~ad 71 (142)
T d1ojua1 1 MKLGFVG-AGRVGSTSAFTCLLNLDVD-----EIALVDIAE--DLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSE 71 (142)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHSCCS-----EEEEECSSH--HHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCcCc-----eEEEEeccc--chhhHHHHHHhhhccccCCCCccccCCC-HHHhcccc
Confidence 7999999 5999999999999999875 999999974 77899999999986443 345555555 68999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~ 156 (320)
+||++||.|++++++|.+++.+|+++++++++.+.+++ |+++++++|||+|++|+++++. ++||++|++|+
T Consensus 72 iVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~-sg~p~~rViG~ 142 (142)
T d1ojua1 72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKE-SGKPRNEVFGM 142 (142)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHH-SCCCTTSEEEC
T ss_pred EEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHH-HCCChhcEecC
Confidence 99999999999999999999999999999999999998 8999999999999999999996 89999998774
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=6.2e-31 Score=212.80 Aligned_cols=142 Identities=19% Similarity=0.323 Sum_probs=124.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC--cceEEe-CChhhhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVAT-TDAVEACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~-~~~~~al~~a 82 (320)
|||+|+||+|+||+++++.|+.+++++ |++|+|++++.++++++++|+.|...... .+++.. ++.+++++||
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~-----el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~a 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMK-----DLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDES 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCC-----EEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCccc-----ccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccc
Confidence 799999988999999999999999875 99999998665678899999999765443 334333 4568899999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~ 155 (320)
|+||++||.|++++++|.+++..|+++++++++.+.+++ |+++ +++|||+|+|++++++. ++||++|++|
T Consensus 76 DvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~-~~~i-ivVtNPvD~mt~~~~k~-sg~p~~rViG 145 (145)
T d1hyea1 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKI-FVITNPVDVMTYKALVD-SKFERNQVFG 145 (145)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEE-EECSSSHHHHHHHHHHH-HCCCTTSEEE
T ss_pred eEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccC-CCeE-EEEcCchHHHHHHHHHH-HCcCcccccC
Confidence 999999999999999999999999999999999999998 7764 56899999999999996 8999999865
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.97 E-value=2.2e-31 Score=220.65 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=125.4
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHH
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI 235 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (320)
||.||++||++++|+++|++|++|+++ |||+||++|||+||++++ +|.|+.+++.++.|..+++.+.+++++++|
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i 75 (163)
T d1hyha2 1 GTLLDTARMQRAVGEAFDLDPRSVSGY-NLGEHGNSQFVAWSTVRV----MGQPIVTLADAGDIDLAAIEEEARKGGFTV 75 (163)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGCBCC-EEBCTTTTCEECTTTCEE----TTEEGGGC-----CCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhCcCHHHeEEE-EEcCCCCcCccceecccc----CCchHHHHhccccchHHHHHHHHhhhHHHH
Confidence 689999999999999999999999988 589999999999999999 999999998888788899999999999999
Q ss_pred HhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 236 IKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 236 ~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
++.||.+.+. ++.++..++. ++.. ++..+++++.|..+ +++|||+||+++ +|+++++ +++||++||++|+
T Consensus 76 ~~~kg~~~~~-~a~~~~~~~~-~~~~-~~~~~~~~s~~~~~-----~~~~~s~Pv~ig~~Gv~~v~-~l~Ls~~E~~~l~ 146 (163)
T d1hyha2 76 LNGKGYTSYG-VATSAIRIAK-AVMA-DAHAELVVSNRRDD-----MGMYLSYPAIIGRDGVLAET-TLDLTTDEQEKLL 146 (163)
T ss_dssp HHHHSSCCHH-HHHHHHHHHH-HHHT-TCCEEEEEEEECTT-----TCSEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred HHHHHhHHHh-HHHHhhHHHH-HhcC-CccceeeeceecCC-----cceEEEeEEEEcCCeEEEEe-cCCCCHHHHHHHH
Confidence 9999988764 4666665554 4554 57788988877443 578999999999 8877777 7999999999998
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
+++.
T Consensus 147 ~s~~ 150 (163)
T d1hyha2 147 QSRD 150 (163)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=8.6e-31 Score=211.24 Aligned_cols=139 Identities=17% Similarity=0.358 Sum_probs=125.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+|| |.||+++++.|+.+++.. |++|+|+++ ++++++++|+.|.. ++..+....++.+++++|||+|
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~-----el~L~Di~~--~~~~g~~~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv 71 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAR-----EMVLIDVDK--KRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVV 71 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHHHG-GGSCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCC-----EEEEEeccc--ccccchhccccccc-cccccccccCCcHHHhcCCCEE
Confidence 79999995 999999999999998864 999999974 78899999999975 3334455555668999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~ 155 (320)
|+++|.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++|+++++. +++|++|++|
T Consensus 72 vitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPvd~~t~~~~k~-sg~p~~rViG 139 (140)
T d1a5za1 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVLTYFFLKE-SGMDPRKVFG 139 (140)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HTCCTTTEEE
T ss_pred EEecccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcHHHHHHHHHHH-HCcCccceeC
Confidence 999999999999999999999999999999999999 8999999999999999999996 8999999765
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=99.97 E-value=1.2e-30 Score=213.99 Aligned_cols=142 Identities=21% Similarity=0.406 Sum_probs=128.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+..||+|+| +|+||+++++.|+.+++++ |++|+|+++ ++++|+++||+|...+.........+.+++++|||
T Consensus 19 ~~~KV~IIG-aG~VG~~~A~~l~~~~l~~-----ElvLiD~~~--~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~ad 90 (160)
T d1i0za1 19 PNNKITVVG-VGQVGMACAISILGKSLAD-----ELALVDVLE--DKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSK 90 (160)
T ss_dssp CSSEEEEEC-CSHHHHHHHHHHHHTTCCS-----EEEEECSCH--HHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhcCCCc-----EEEEEEecc--chhHHHHHHHhccccccCCCeEEeccchhhccccc
Confidence 357999999 5999999999999999975 999999974 67899999999987554444555566789999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~ 155 (320)
+||++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++|+++++. +|||++|++|
T Consensus 91 iVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~-p~aiiivvtNPvDv~t~~~~k~-sglp~~rViG 160 (160)
T d1i0za1 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYS-PDCIIIVVSNPVDILTYVTWKL-SGLPKHRVIG 160 (160)
T ss_dssp EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHH-HCCCGGGEEE
T ss_pred EEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeCCchHHHHHHHHHH-HCcCcccccC
Confidence 99999999999999999999999999999999999998 8999999999999999999996 7999999876
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.97 E-value=3.2e-32 Score=227.67 Aligned_cols=152 Identities=24% Similarity=0.311 Sum_probs=130.4
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchh----hhhHHHHHHhhhh
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAW----LNGEFITTVQQRG 232 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~ 232 (320)
|.||++|+++++|+++|+++.+|+++ ||||||++|+|+||++++ +|.|+.+++.+..| ..+++.+++++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~i----~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 75 (172)
T d1llca2 1 TSLDTARFRQSIAEMVNVDARSVHAY-IMGEHGDTEFPVWSHANI----GGVTIAEWVKAHPEIKEDKLVKMFEDVRDAA 75 (172)
T ss_dssp THHHHHHHHHHHHHHSCCCTTSCEEE-EEBSSSSSCEEEEEEEES----TTCCSSSSSSCSCSSSSSSSSTTTTTTGGGT
T ss_pred CchHHHHHHHHHHHHhCcCHHHeEEE-EEcCCCCcceeeeecccc----CCccHHHHHhhhhccchhHHHHHHHhhcchH
Confidence 68999999999999999999999987 589999999999999999 99999988765322 2356777888999
Q ss_pred HHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhh
Q 020875 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMS 311 (320)
Q Consensus 233 ~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~ 311 (320)
+++++.||.+.+ ++|.+++..+.. +.. +++.++|+|++++|+||+ .++|||+||++| +|+++++ +++||++||+
T Consensus 76 ~~i~~~kg~~~~-a~a~~~~~~~~~-~~~-~~~~~~~~~~~~~g~ygi-~~~~~s~P~~lg~~Gv~~i~-~l~L~~~E~~ 150 (172)
T d1llca2 76 YEIIKLKGATFY-GIATALARISKA-ILN-DENAVLPLSVYMDGQYGI-NDLYIGTPAVINRNGIQNIL-EIPLTDHEEE 150 (172)
T ss_dssp TTTSSSSSCTTH-HHHHHHHHHHHH-HHH-TCCCCEECCCCCSSSSSC-CSSCCBCEEEEETTEEEEEC-CCCCTTHHHH
T ss_pred HHHHHhhhhhhh-hhHHHHHHHHHH-Hhc-CCCCccceeeeecCccCc-ccceEEEEEEEcCCceEEEe-cCCCCHHHHH
Confidence 999999997765 446666665554 443 467899999999999999 589999999999 9999999 6999999999
Q ss_pred cccCccc
Q 020875 312 FLSPIAF 318 (320)
Q Consensus 312 ~l~~~~~ 318 (320)
+|++++.
T Consensus 151 ~l~~s~~ 157 (172)
T d1llca2 151 SMQKSAS 157 (172)
T ss_dssp HHHTTTT
T ss_pred HHHHHHH
Confidence 9998874
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=4e-31 Score=220.05 Aligned_cols=152 Identities=21% Similarity=0.244 Sum_probs=127.9
Q ss_pred ehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccch----hhhhHHHHHHhhhh
Q 020875 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDA----WLNGEFITTVQQRG 232 (320)
Q Consensus 157 t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~ 232 (320)
|.||++||++++|++||+++++|+++ |||+||++++|+||++++ ++.|+.+++.+.. +..+++.+.++.++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~~-ViG~Hg~~~vp~~s~~~v----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 75 (168)
T d1ldna2 1 TILDTARFRFLLGEYFSVAPQNVHAY-IIGEHGDTELPVWSQAYI----GVMPIRKLVESKGEEAQKDLERIFVNVRDAA 75 (168)
T ss_dssp THHHHHHHHHHHHHHHTSCGGGEEEE-EEBCSSTTCEEEEEEEEE----TTEESTTTSGGGTTTHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHeEEE-EEcCCCCccccchhhccc----CCcchhhhhhhhhhhhccchhhhhhhhhhhH
Confidence 68999999999999999999999988 589999999999999999 9999998876542 23457788888888
Q ss_pred HHHHhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhh
Q 020875 233 AAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMS 311 (320)
Q Consensus 233 ~~i~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~ 311 (320)
.++...|+.+.+. ++.++..++.. +.. +.+.++|++++++|+||. +++|||+||+++ +|+.+++ +++||++||+
T Consensus 76 ~~v~~~~~~s~~~-~a~~~~~~~~~-~~~-~~~~~~~~~~~~~~~yg~-~~v~~s~Pv~lg~~Gv~~v~-~l~Ls~~E~~ 150 (168)
T d1ldna2 76 YQIIEKKGATYYG-IAMGLARVTRA-ILH-NENAILTVSAYLDGLYGE-RDVYIGVPAVINRNGIREVI-EIELNDDEKN 150 (168)
T ss_dssp HHHHHHHSCCCHH-HHHHHHHHHHH-HHT-TCCEEEEEEEEEESTTSC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHH
T ss_pred HHHHHhhccccch-HHHHHhhHHHh-hhc-ccceeeeeeeeeccccCC-CCeeecceEEEcCCeEEEEe-CCCCCHHHHH
Confidence 9999988876654 45666555554 454 578999999999999996 799999999999 7766666 8999999999
Q ss_pred cccCccc
Q 020875 312 FLSPIAF 318 (320)
Q Consensus 312 ~l~~~~~ 318 (320)
+|++++.
T Consensus 151 ~L~~s~~ 157 (168)
T d1ldna2 151 RFHHSAA 157 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=99.97 E-value=2.1e-30 Score=209.29 Aligned_cols=140 Identities=21% Similarity=0.325 Sum_probs=117.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
.||+|+|| |+||+++++.|+.+++.+ |++|+|+++ ++++++++||+|.. +..+.....++.+++++|||+|
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~-----el~L~D~~~--~~~~g~a~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv 72 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTAN-----ELVLIDVFK--EKAIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCDVI 72 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSS-----EEEEECCC-----CCHHHHHHTTSC-CCTTCEEEC--CGGGGTTCSEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCC-----EEEEEeccC--CccceeeeeeccCc-ccCCCeeEeeCcHHHhCCCceE
Confidence 59999995 999999999999999875 999999975 67889999999976 3444566666778999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~ 156 (320)
|++||.+++++++|.+++.+|+++++++++.+.+++ |+++++++|||+|++|+++++. +++|++|++|.
T Consensus 73 vitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvdv~t~~~~k~-sg~p~~rViG~ 141 (142)
T d1y6ja1 73 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDIITYMIQKW-SGLPVGKVIGS 141 (142)
T ss_dssp EECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHHHHHHHHHH-HTCCTTTEEEC
T ss_pred EEecccccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecChHHHHHHHHHHH-HCCCccceecC
Confidence 999999999999999999999999999999999998 8999999999999999999996 89999997653
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.97 E-value=9.4e-31 Score=212.11 Aligned_cols=140 Identities=13% Similarity=0.183 Sum_probs=119.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
+||+|+| +|+||+++++.|+.+++.+ |++|+|+++ ++++++++|++|.......+....++.+++++|||+|
T Consensus 2 kKI~IIG-aG~VG~~~a~~l~~~~~~~-----elvL~Di~~--~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiV 73 (146)
T d1hyha1 2 RKIGIIG-LGNVGAAVAHGLIAQGVAD-----DYVFIDANE--AKVKADQIDFQDAMANLEAHGNIVINDWAALADADVV 73 (146)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEE
T ss_pred CeEEEEC-cCHHHHHHHHHHHhcCCCc-----eEEEEeccc--chhhhHHHhhhccccccCCccceeccCHHHhccccEE
Confidence 6999999 5999999999999999865 999999974 6889999999998655444444445668899999999
Q ss_pred EEeCCCCC----CCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE
Q 020875 86 VMVGGFPR----KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (320)
Q Consensus 86 i~~ag~~~----~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~ 155 (320)
|++||.++ +++++|.+++..|+++++++++.+++++ |++++|++|||+|++|++++++ +|||++|++|
T Consensus 74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~-sg~p~~rViG 145 (146)
T d1hyha1 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHV-TGFPAHKVIG 145 (146)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEE
T ss_pred EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHH-hCCCccceeC
Confidence 99999876 5678999999999999999999999999 8999999999999999999996 8999999765
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.5e-30 Score=208.39 Aligned_cols=141 Identities=27% Similarity=0.383 Sum_probs=122.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|||+|+||+|+||+++++.|+.+ ++.. |++|+|+. +.++|+++|++|...+........++.+++++|+|+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~-----el~L~D~~---~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDv 72 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGS-----ELSLYDIA---PVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADV 72 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTC-----EEEEECSS---TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCc-----EEEEeccc---ccchhHHHHHHCCccccCCcEEEcCCCccccCCCCE
Confidence 79999998899999999998754 6543 99999985 357899999999876554444444566889999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH---CCCCCCCcEEE
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEF---APSIPAKNITC 155 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~---~~~~~~~~i~~ 155 (320)
||++||.|++++++|.+++..|.++++++++.+.+++ |+++++++|||+|++++++++. ++++|++|++|
T Consensus 73 vvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG 145 (145)
T d2cmda1 73 VLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG 145 (145)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred EEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence 9999999999999999999999999999999999998 8999999999999999987753 46799999765
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.97 E-value=2.5e-30 Score=209.71 Aligned_cols=144 Identities=20% Similarity=0.334 Sum_probs=117.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT 80 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~ 80 (320)
|+ +.|||+|+| +|+||+++++.|+.+++.. ||+|+|+++ ++++|+++|++|............. .+++++
T Consensus 2 m~-~~~KI~IIG-aG~VG~~~A~~l~~~~~~~-----elvL~D~~~--~~~~g~a~Dl~~a~~~~~~~~~~~~-d~~~~~ 71 (146)
T d1ez4a1 2 MP-NHQKVVLVG-DGAVGSSYAFAMAQQGIAE-----EFVIVDVVK--DRTKGDALDLEDAQAFTAPKKIYSG-EYSDCK 71 (146)
T ss_dssp BT-TBCEEEEEC-CSHHHHHHHHHHHHHTCCS-----EEEEECSSH--HHHHHHHHHHHGGGGGSCCCEEEEC-CGGGGT
T ss_pred CC-CCCEEEEEC-CCHHHHHHHHHHHhcCCCc-----EEEEeeccc--chhHHHHHHHhccccccCCceEeec-cHHHhc
Confidence 45 357999999 5999999999999999864 999999974 6789999999998754444444444 468899
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~ 156 (320)
|||+||+++|.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++++++++. +++|++|++|.
T Consensus 72 ~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~-p~aivivvtNPvdv~t~~~~k~-sg~p~~rViG~ 145 (146)
T d1ez4a1 72 DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAANPVDILTYATWKF-SGFPKERVIGS 145 (146)
T ss_dssp TCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHH-HCCCGGGEEEC
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcC-CCcEEEEeCCccHHHHHHHHHH-HCcCccceecC
Confidence 99999999999999999999999999999999999999998 8999999999999999999996 89999997653
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.2e-30 Score=212.36 Aligned_cols=142 Identities=21% Similarity=0.388 Sum_probs=127.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++.||+|+| +|.||+++++.|+.+++.+ |++|+|+++ ++++|+++||+|.............+.++++++||
T Consensus 18 ~~~KI~IIG-aG~VG~~~A~~l~~~~l~~-----elvL~D~~~--~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~ad 89 (159)
T d2ldxa1 18 SRCKITVVG-VGDVGMACAISILLKGLAD-----ELALVDADT--DKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSK 89 (159)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTTSCS-----EEEEECSCH--HHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEE
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--hhhhccHHHHhCcchhcCCCeEEeccchhhhcccc
Confidence 456999999 5999999999999999875 999999974 78899999999987555444444445688999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~ 155 (320)
+||++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++|++++++ +|+|++|++|
T Consensus 90 ivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~-p~~ivivvtNPvDv~t~~~~k~-sg~p~~rV~G 159 (159)
T d2ldxa1 90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTNPVDILTYVVWKI-SGFPVGRVIG 159 (159)
T ss_dssp EEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHS-TTCEEEECSSSHHHHHHHHHHH-HCSCTTTEEE
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccC-CCeEEEEeCCcHHHHHHHHHHH-HCcCcccccC
Confidence 99999999999999999999999999999999999998 8999999999999999999996 8999999876
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.97 E-value=5.6e-30 Score=207.17 Aligned_cols=140 Identities=22% Similarity=0.375 Sum_probs=124.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--CcceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~al~~aD 83 (320)
|||+|+|| |+||+++++.|+.+++.+ |++|+|+++ +++++..+|+.|..... ..++..+ +.+++++|||
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~-----el~L~Di~~--~~~~~~~~d~~~~~~~~~~~~~i~~~-~~~~~~~dad 71 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLAR-----ELVLLDVVE--GIPQGKALDMYESGPVGLFDTKVTGS-NDYADTANSD 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCS-----EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCEEEEE-SCGGGGTTCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCc-----eEEEecccc--ccchhhhhhhhcccchhcccceEEec-CCHHHhcCCe
Confidence 79999995 999999999999999865 999999985 67788899998876432 2344444 4578999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~ 156 (320)
+||+++|.|++++++|.+++.+|+++++++++.+.+++ |+++++++|||+|++|+++++. +++|++|++|+
T Consensus 72 vvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvd~~~~~~~~~-sg~p~~rviG~ 142 (142)
T d1guza1 72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDIMTHVAWVR-SGLPKERVIGM 142 (142)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHHHHHHHHHH-HCSCGGGEEEE
T ss_pred EEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCChHHHHHHHHHH-hCCChHhEeeC
Confidence 99999999999999999999999999999999999999 8999999999999999999996 79999998774
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=1.3e-29 Score=204.80 Aligned_cols=140 Identities=26% Similarity=0.410 Sum_probs=122.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcc-eEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKG-VVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~-v~~~~~~~~al~~aDv 84 (320)
.||+|+||+|+||+++++.|+.+++++ |++|+|+++ .+++++|++|........ .....+.+++++|||+
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~-----elvLiDi~~----~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDi 71 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVS-----RLTLYDIAH----TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDV 71 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCS-----EEEEEESSS----HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSE
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccc-----eEEEEeccc----cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCE
Confidence 399999988999999999999999975 999999863 578889999987554333 3334577899999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH---HCCCCCCCcEEE
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE---FAPSIPAKNITC 155 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~---~~~~~~~~~i~~ 155 (320)
||++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++|+++++ ..++||++|++|
T Consensus 72 vVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG 144 (144)
T d1mlda1 72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG 144 (144)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred EEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence 9999999999999999999999999999999999998 899999999999998887653 357899999865
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.96 E-value=5.1e-29 Score=203.87 Aligned_cols=145 Identities=19% Similarity=0.296 Sum_probs=128.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEA 78 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~a 78 (320)
|-.+++||+|+|| |.||+++++.|..+++. |++|+|+++ ++++++++|+.|.... ....+..+++.+++
T Consensus 3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~------el~L~D~~~--~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~ 73 (154)
T d1pzga1 3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA------DVVLYDVVK--GMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA 73 (154)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC------EEEEECSSS--SHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCc------eEEEEEecc--ccchhHHHHHhhhccccCCeeEEeccCchhhh
Confidence 5567899999995 99999999999988863 899999985 6789999999997543 34556667778899
Q ss_pred cCCCcEEEEeCCCCCCCCC-----CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcE
Q 020875 79 CTGVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~-----~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i 153 (320)
++|||+||+++|.++++++ +|.+++..|+++++++++.+.+++ |+++++++|||+|++|+++++. +|||++|+
T Consensus 74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPvd~lt~~~~~~-sg~p~~rV 151 (154)
T d1pzga1 74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMVKVMCEA-SGVPTNMI 151 (154)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHH-HCCCGGGE
T ss_pred hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcHHHHHHHHHHH-hCcChhcE
Confidence 9999999999999998885 899999999999999999999999 8999999999999999999996 89999998
Q ss_pred EEe
Q 020875 154 TCL 156 (320)
Q Consensus 154 ~~~ 156 (320)
+|+
T Consensus 152 iG~ 154 (154)
T d1pzga1 152 CGM 154 (154)
T ss_dssp EEC
T ss_pred ecC
Confidence 774
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.96 E-value=1.7e-29 Score=208.64 Aligned_cols=149 Identities=20% Similarity=0.240 Sum_probs=125.8
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHHH
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAI 235 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i 235 (320)
||.||++|+++++|+++|++|++|++++ ||+||++++|+||++++ ++.|.... .+..+++.+.++.++.++
T Consensus 2 Gt~LD~~R~~~~lA~~l~v~~~~V~~~V-iG~Hg~~~v~~~s~~~v----~~~~~~~~----~~~~~~~~~~~~~~~~~i 72 (161)
T d1o6za2 2 GGRLDSARFRYVLSEEFDAPVQNVEGTI-LGEHGDAQVPVFSKVSV----DGTDPEFS----GDEKEQLLGDLQESAMDV 72 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGEECCE-EECSSTTEEECGGGCEE----TTBCCCCC----HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCcCHHHeEEEE-EeCCCCceeeehhhhcc----cccccccc----hHHHHHHHHHhhhhHHHH
Confidence 4899999999999999999999999985 79999999999999999 77775321 223467888899999999
Q ss_pred HhcCCccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhccc
Q 020875 236 IKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFLS 314 (320)
Q Consensus 236 ~~~kg~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l~ 314 (320)
++.++.+.+. ++.+++..+. +++. +.+.+++++++++|+|+. .++|||+||++| +|+++++ +++||++||++|+
T Consensus 73 ~~~~~~s~~~-~a~a~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~-~~i~~S~Pv~ig~~Gv~~v~-~l~l~~~E~~~L~ 147 (161)
T d1o6za2 73 IERKGATEWG-PARGVAHMVE-AILH-DTGEVLPASVKLEGEFGH-EDTAFGVPVSLGSNGVEEIV-EWDLDDYEQDLMA 147 (161)
T ss_dssp HTTTSSCCHH-HHHHHHHHHH-HHHT-TCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred HHhhhhhhhH-HHHhhHhhhH-hhhh-ccccceeecccccccccc-cCceeeeeeEEcCCCEEEEe-CCCCCHHHHHHHH
Confidence 9999877654 4666665554 4554 567899999999999988 799999999999 8998888 7999999999999
Q ss_pred Cccc
Q 020875 315 PIAF 318 (320)
Q Consensus 315 ~~~~ 318 (320)
+++.
T Consensus 148 ~s~~ 151 (161)
T d1o6za2 148 DAAE 151 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.96 E-value=2.6e-29 Score=203.01 Aligned_cols=139 Identities=24% Similarity=0.361 Sum_probs=114.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--CcceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v~~~~~~~~al~~a 82 (320)
++||+|+| +|.||+++++.|+.+++. +++|+|+++ ++++++++|+.|..... ...+..+.+ +++++|+
T Consensus 1 r~KI~IIG-aG~VG~~~A~~l~~~~l~------dl~l~D~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~d-~~~~~~a 70 (142)
T d1uxja1 1 RKKISIIG-AGFVGSTTAHWLAAKELG------DIVLLDIVE--GVPQGKALDLYEASPIEGFDVRVTGTNN-YADTANS 70 (142)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCS------EEEEECSSS--SHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHhCCcc------eEEEEeecc--ccchhHHHHhhccccccCCCCEEEecCc-HHHhcCC
Confidence 36999999 599999999999988873 899999975 67899999999986433 344555554 6789999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~ 155 (320)
|+||++||.+++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++|+++++. +|||++|++|
T Consensus 71 dvvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aivivvtNPvDv~t~~~~~~-sglp~~rViG 141 (142)
T d1uxja1 71 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAMTYLAAEV-SGFPKERVIG 141 (142)
T ss_dssp SEEEECCSCC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEECSSSHHHHHHHHHHH-HCCCGGGEEE
T ss_pred CEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEEeCCchHHHHHHHHHH-HCcCcccccC
Confidence 999999999999999999999999999999999999998 8999999999999999999996 8999999876
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.96 E-value=1e-28 Score=200.82 Aligned_cols=140 Identities=19% Similarity=0.406 Sum_probs=121.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC--cceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~--~~v~~~~~~~~al~~a 82 (320)
+.||+|+| +|+||+++++.|+++++ .|++|+|+++ ++++++++|++|...... ..+... +.+++++|+
T Consensus 3 ~~KI~IIG-aG~VG~~~a~~l~~~~l------~el~L~Di~~--~~~~g~a~Dl~~~~~~~~~~~~v~~~-~~~~~~~~a 72 (150)
T d1t2da1 3 KAKIVLVG-SGMIGGVMATLIVQKNL------GDVVLFDIVK--NMPHGKALDTSHTNVMAYSNCKVSGS-NTYDDLAGA 72 (150)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC------CEEEEECSSS--SHHHHHHHHHHTHHHHHTCCCCEEEE-CCGGGGTTC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHhCCC------CeEEEEeccC--CcceeeecchhhhccccCCCcEEEec-ccccccCCC
Confidence 46999999 59999999998888886 2899999975 678999999999864332 334333 567899999
Q ss_pred cEEEEeCCCCCCCCCC-----HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEe
Q 020875 83 NIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~-----r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~ 156 (320)
|+||+++|.+++++++ |.+++..|+++++++++.+++++ |+++++++|||+|+||+++++. ++||++|++|.
T Consensus 73 dvvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~~~-sg~p~~rViG~ 149 (150)
T d1t2da1 73 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQH-SGVPKNKIIGL 149 (150)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHH-HCCCGGGEEEC
T ss_pred cEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchHHHHHHHHHH-HCCCchheecc
Confidence 9999999999988765 99999999999999999999999 8999999999999999999996 89999997663
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.94 E-value=1.4e-27 Score=198.58 Aligned_cols=145 Identities=18% Similarity=0.167 Sum_probs=109.4
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC-CCccccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHH
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH-SSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAA 234 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h-g~~~~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 234 (320)
+|.||++||++++|++||++|++|++++ +||| |++++|+||++.+ ++.+.. + ..+++.+++++++++
T Consensus 1 ~T~LDs~R~~~~la~~l~v~~~~V~~~V-iGeHg~~t~vp~~s~~~~----~~~~~~-----~--~~~~l~~~v~~~~~e 68 (169)
T d1mlda2 1 VTTLDIVRANAFVAELKGLDPARVSVPV-IGGHAGKTIIPLISQCTP----KVDFPQ-----D--QLSTLTGRIQEAGTE 68 (169)
T ss_dssp CCHHHHHHHHHHHHHHTTCCGGGCBCCE-EECSSGGGEEECGGGCBS----CCCCCH-----H--HHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHCcCHHHeeEEE-EEcCCCcceeehhhhhcc----CCCCcH-----H--HHHHHHHHHHHhHHH
Confidence 4889999999999999999999999996 6888 5788888888887 543222 1 247899999999999
Q ss_pred HHhcCCccch--HHHHHHHHHHHHHH---HhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCC-CCCh
Q 020875 235 IIKARKLSSA--LSAASSACDHIRDW---VLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGT-DAIL 307 (320)
Q Consensus 235 i~~~kg~~~~--~~~a~a~~~~i~~~---i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~-~L~~ 307 (320)
|++.|+.+.+ ++++.++++.+... +.+ ...+.++ +.+.||.++++|||+||++| +|+++++ ++ .||+
T Consensus 69 ii~~k~~~~~~~~~~~~a~~~~~~~i~~~~~~--~~~v~~~---~~~~~~~~~~v~~s~P~~ig~~Gi~~v~-~l~~L~~ 142 (169)
T d1mlda2 69 VVKAKAGAGSATLSMAYAGARFVFSLVDAMNG--KEGVVEC---SFVKSQETDCPYFSTPLLLGKKGIEKNL-GIGKISP 142 (169)
T ss_dssp HHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHT--CTTCEEE---EEEECCSSSSSEEEEEEEEETTEEEEEC-CCCSCCH
T ss_pred HHHhhcCcChHhHHHHHHHHHHHHHhccccCC--ceEEEEE---eeccccccCCEeEeeeEEEcCCccEEEe-cCCCCCH
Confidence 9999875443 44555555444332 232 2333333 33456655789999999999 9999999 56 7999
Q ss_pred hhhhcccCccc
Q 020875 308 YPMSFLSPIAF 318 (320)
Q Consensus 308 ~E~~~l~~~~~ 318 (320)
+||++|+.+|.
T Consensus 143 ~E~~~l~~s~~ 153 (169)
T d1mlda2 143 FEEKMIAEAIP 153 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=7.9e-26 Score=187.56 Aligned_cols=147 Identities=16% Similarity=0.086 Sum_probs=111.7
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCcc-ccccccccccCCCCCcchhhhcccchhhhhHHHHHHhhhhHH
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQ-YPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAA 234 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~-~~~~S~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 234 (320)
+|.||++||++++|+++|++|.+|++++ +|+||+++ +|++|++.. .. + ..+..+++.+.+|+++.+
T Consensus 1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~V-iGghg~~~~~p~~s~~~~----~~--~------~~~~~~~l~~~v~~~g~~ 67 (167)
T d2cmda2 1 VTTLDIIRSNTFVAELKGKQPGEVEVPV-IGGHSGVTILPLLSQVPG----VS--F------TEQEVADLTKRIQNAGTE 67 (167)
T ss_dssp CCHHHHHHHHHHHHHHHTCCGGGCCCCE-EECSSTTTEEECGGGCTT----CC--C------CHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHCcCHHHeEEEE-EEcCCCceEeeecccccC----CC--C------cHHHHHHHHHHHHhhhhh
Confidence 4789999999999999999999999996 68887554 555565443 22 1 123568899999999999
Q ss_pred HHhcCC--ccchHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCccCCCCceEEEEEEEEe-CCeEEEecCC-CCChhhh
Q 020875 235 IIKARK--LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCR-NGEWTIVQGT-DAILYPM 310 (320)
Q Consensus 235 i~~~kg--~~~~~~~a~a~~~~i~~~i~~~~~~~i~~~~v~~~g~yg~~~~v~~s~P~~i~-~G~~~~~~~~-~L~~~E~ 310 (320)
+++.++ .+.++++|.+++++....+. +.+...++++.+.++|+.+.++|||+||+++ +|+++++ ++ .|+++|+
T Consensus 68 ii~~~~~~~~~~~~~a~a~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~-~l~~L~~~E~ 144 (167)
T d2cmda2 68 VVEAKAGGGSATLSMGQAAARFGLSLVR--ALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERK-SIGTLSAFEQ 144 (167)
T ss_dssp HHHHHTTSCSCCHHHHHHHHHHHHHHHH--HHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEEC-CCCCCCHHHH
T ss_pred hhhhhccCcchHHHHHHHHHHHHHHHhc--cCCCceEEEEEcccccccCCCccccccEEEeCCceEEEe-eCCCCCHHHH
Confidence 998663 23345667777655544333 2345566677777888887899999999999 8999998 56 6999999
Q ss_pred hcccCccc
Q 020875 311 SFLSPIAF 318 (320)
Q Consensus 311 ~~l~~~~~ 318 (320)
++|+.++.
T Consensus 145 ~~l~~s~~ 152 (167)
T d2cmda2 145 NALEGMLD 152 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.89 E-value=3.1e-23 Score=171.88 Aligned_cols=143 Identities=14% Similarity=0.125 Sum_probs=112.0
Q ss_pred CCEEEEEcCCChhHHHH--HHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC----CCCcceEEeCChhhh
Q 020875 5 PVRVLVTGAAGQIGYAL--VPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF----PLLKGVVATTDAVEA 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~l--a~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~----~~~~~v~~~~~~~~a 78 (320)
+|||+|+|| |.+|... +..+.....+. ..||+|+|+++ ++.++.++|+.+... ....++..+++.+++
T Consensus 1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~---~~eI~L~Di~e--~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~a 74 (169)
T d1s6ya1 1 RLKIATIGG-GSSYTPELVEGLIKRYHELP---VGELWLVDIPE--GKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRA 74 (169)
T ss_dssp CEEEEEETT-TCTTHHHHHHHHHHTTTTCC---EEEEEEECCGG--GHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred CcEEEEECC-ChhhHHHHHHHHHHhccccC---CCEEEEEcCCc--cHHHHHHHHHHHHHHHHhcCCCceeeecCCchhh
Confidence 479999995 8777543 33444332211 24999999985 445667788766431 234577788899999
Q ss_pred cCCCcEEEEeCCCCCCCCCCHHHH--------------------HHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH
Q 020875 79 CTGVNIAVMVGGFPRKEGMERKDV--------------------MSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 79 l~~aDvVi~~ag~~~~~~~~r~~~--------------------~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~ 138 (320)
++|||+||++++.+++++++|+++ +.+|+++++++++.|++++ |+++++++|||+|++|
T Consensus 75 l~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNPvdv~t 153 (169)
T d1s6ya1 75 LDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGMVT 153 (169)
T ss_dssp HTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHH
T ss_pred cCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCChHHHHH
Confidence 999999999999988776666655 4689999999999999999 9999999999999999
Q ss_pred HHHHHHCCCCCCCcEEEee
Q 020875 139 LILKEFAPSIPAKNITCLT 157 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t 157 (320)
++++++ +|++|++|+|
T Consensus 154 ~~~~k~---~p~~kviGlC 169 (169)
T d1s6ya1 154 EAVLRY---TKQEKVVGLC 169 (169)
T ss_dssp HHHHHH---CCCCCEEECC
T ss_pred HHHHHH---CCCCCEEeeC
Confidence 999997 4778888876
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=4.9e-23 Score=169.78 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=113.0
Q ss_pred CCCEEEEEcCCChhHHHHHH-HHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVP-MIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~-~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~al 79 (320)
+..||+|+|| |.+|.+.+. .++. ...+ ...||+|+|+++ +++++...++.+... .....+..+++.++++
T Consensus 2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l---~~~eivL~Did~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal 75 (167)
T d1u8xx1 2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEF---PIRKLKLYDNDK--ERQDRIAGACDVFIREKAPDIEFAATTDPEEAF 75 (167)
T ss_dssp CCEEEEEECT-TSSSHHHHHHHHHHTTTTS---CEEEEEEECSCH--HHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHH
T ss_pred CCceEEEECC-ChhhhHHHHHHHHhhhhhc---CCCEEEEEcCCh--hHHHHHHHHHHHHHHHhCCCcceEecCChhhcc
Confidence 5679999995 999887653 3332 2111 124899999974 677777777766542 3345778888999999
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHH--------------------hhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH
Q 020875 80 TGVNIAVMVGGFPRKEGMERKDVMS--------------------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL 139 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~~~r~~~~~--------------------~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~ 139 (320)
+|||+||+++|.+++++++|++++. +|+++++++++.|+++| |+++++++|||+|++|+
T Consensus 76 ~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~~TNPvdv~t~ 154 (167)
T d1u8xx1 76 TDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVAE 154 (167)
T ss_dssp SSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHHHHHH
T ss_pred CCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEEeCCHHHHHHH
Confidence 9999999999999988888888754 56999999999999999 99999999999999999
Q ss_pred HHHHHCCCCCCCcEE
Q 020875 140 ILKEFAPSIPAKNIT 154 (320)
Q Consensus 140 ~~~~~~~~~~~~~i~ 154 (320)
+++++ +|++|++
T Consensus 155 ~~~k~---~P~~rVI 166 (167)
T d1u8xx1 155 ATRRL---RPNSKIL 166 (167)
T ss_dssp HHHHH---STTCCEE
T ss_pred HHHHH---CCccccc
Confidence 99997 5777764
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.1e-22 Score=167.44 Aligned_cols=142 Identities=12% Similarity=0.111 Sum_probs=108.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+|| |.+|.+.+...+.+.... -+..|++|+|+++ ++++ ...|+.+.......++..+++.+++++|||+|
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~-~~~~el~L~Did~--~k~~-~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvV 75 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISED-VRIDEVIFYDIDE--EKQK-IVVDFVKRLVKDRFKVLISDTFEGAVVDAKYV 75 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTT-SCCCEEEEECSCH--HHHH-HHHHHHHHHHTTSSEEEECSSHHHHHTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccc-cCccEEEEEecCc--HHHH-HHHHHHHhhhccCceEEEecCcccccCCCCEE
Confidence 79999995 999999886544332210 0124999999975 4554 45677766544556788888999999999999
Q ss_pred EEeCCCCCCCCCCHHHHHH--------------------hhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 86 VMVGGFPRKEGMERKDVMS--------------------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~--------------------~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
|+++|.+++++++|++++. ++++.+.++.+ +.+++ |+++++++|||+|.+|++++++
T Consensus 76 Vita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~-p~a~~i~vtNPvdiit~~~~~~- 152 (162)
T d1up7a1 76 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKT-SNATIVNFTNPSGHITEFVRNY- 152 (162)
T ss_dssp EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHT-TCCEEEECSSSHHHHHHHHHHT-
T ss_pred EEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccC-CCeEEEEeCCHHHHHHHHHHHh-
Confidence 9999998877777766554 45566666655 66778 8999999999999999999995
Q ss_pred CCCCCCcEEEee
Q 020875 146 PSIPAKNITCLT 157 (320)
Q Consensus 146 ~~~~~~~i~~~t 157 (320)
+|++|++|+|
T Consensus 153 --~p~~rviGlC 162 (162)
T d1up7a1 153 --LEYEKFIGLC 162 (162)
T ss_dssp --TCCSSEEECC
T ss_pred --CCCCCEEeeC
Confidence 4677888876
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=3.1e-21 Score=159.92 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=105.7
Q ss_pred CCCEEEEEcCCChhHHHHHH--HHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVP--MIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~--~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~~~al 79 (320)
++|||+|+| +|++|++++. .|+....+. ..||+|+|+++ +++++...|+.+.... ...++..+++.++++
T Consensus 1 p~mKI~iIG-aGsvg~t~~~~~~l~~~~~l~---~~eivL~Did~--~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL 74 (171)
T d1obba1 1 PSVKIGIIG-AGSAVFSLRLVSDLCKTPGLS---GSTVTLMDIDE--ERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI 74 (171)
T ss_dssp CCCEEEEET-TTCHHHHHHHHHHHHTCGGGT---TCEEEEECSCH--HHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH
T ss_pred CCcEEEEEC-CCHHHhHHHHHHHHHhccccC---CCEEEEEeCCc--hHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcc
Confidence 368999999 5999987543 344322211 13999999974 6888888898886533 345777888999999
Q ss_pred CCCcEEEEeCCCCC------------------CCCCCHHHH--------HHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 80 TGVNIAVMVGGFPR------------------KEGMERKDV--------MSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 80 ~~aDvVi~~ag~~~------------------~~~~~r~~~--------~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+|||+||++++.+. .++++|.+. ..+|+++++++++.|++++ |++++|++|||
T Consensus 75 ~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~-p~a~~i~~TNP 153 (171)
T d1obba1 75 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYLQAANP 153 (171)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEEECSSC
T ss_pred cCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHC-cCeEEEEECCh
Confidence 99999999876543 334444443 4579999999999999999 89999999999
Q ss_pred chhhHHHHHHHCCCC
Q 020875 134 ANTNALILKEFAPSI 148 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~ 148 (320)
+|++|++++++ +++
T Consensus 154 vdv~t~~~~k~-~~~ 167 (171)
T d1obba1 154 IFEGTTLVTRT-VPI 167 (171)
T ss_dssp HHHHHHHHHHH-SCS
T ss_pred HHHHHHHHHHh-cCC
Confidence 99999999997 443
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.32 E-value=1.1e-12 Score=119.66 Aligned_cols=178 Identities=11% Similarity=0.058 Sum_probs=116.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+.|||+||||+||||++++..|+++|+ +|+.+|+........ ++.... ....++.......++++++|
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-------~V~~~d~~~~~~~~~----~~~~~~-~~~~D~~~~~~~~~~~~~~d 81 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGH-------YVIASDWKKNEHMTE----DMFCDE-FHLVDLRVMENCLKVTEGVD 81 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCCSSSCG----GGTCSE-EEECCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEeCCCccchhh----hcccCc-EEEeechhHHHHHHHhhcCC
Confidence 568999999999999999999999997 899999754221110 111100 00112222234566788999
Q ss_pred EEEEeCCCCCCC---CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH----------HHCCCCCC
Q 020875 84 IAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK----------EFAPSIPA 150 (320)
Q Consensus 84 vVi~~ag~~~~~---~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~----------~~~~~~~~ 150 (320)
.|||+|+..... ..........|+..+.++++.+++.+ . -++|..|+.. +...... .......|
T Consensus 82 ~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~-v-k~~i~~SS~~-~~~~~~~~~~~~~~~~~~e~~~~~p 158 (363)
T d2c5aa1 82 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-I-KRFFYASSAC-IYPEFKQLETTNVSLKESDAWPAEP 158 (363)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-C-SEEEEEEEGG-GSCGGGSSSSSSCEECGGGGSSBCC
T ss_pred eEeecccccccccccccccccccccccchhhHHHHhHHhhC-c-cccccccccc-cccccccccccccccccccCCcCCC
Confidence 999998754321 23455677889999999999999875 2 2456555432 1100000 00011123
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCCcccccc
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDV 196 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~~~~~~~ 196 (320)
...++.+++...++...+.+..|++...+|...|+|.++......+
T Consensus 159 ~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~ 204 (363)
T d2c5aa1 159 QDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGRE 204 (363)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCccccccc
Confidence 4468899998989888889999999999998889998775444433
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2e-12 Score=116.02 Aligned_cols=169 Identities=10% Similarity=-0.027 Sum_probs=113.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
++||+||||+||+|++++..|+++|+ +|+.+|+... .+.. .+.+.......++........++.++|+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~-------~V~~~d~~~~-~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~d~ 68 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGH-------EVTVVDNFFT-GRKR----NVEHWIGHENFELINHDVVEPLYIEVDQ 68 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSS-CCGG----GTGGGTTCTTEEEEECCTTSCCCCCCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCCc-CCHH----HHHHhcCCCceEEEehHHHHHHHcCCCE
Confidence 36999999999999999999999987 8998986321 1111 1111111111233333345566789999
Q ss_pred EEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHH----CCCCCCCcEE
Q 020875 85 AVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEF----APSIPAKNIT 154 (320)
Q Consensus 85 Vi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~----~~~~~~~~i~ 154 (320)
|||+|+.... ...+..+.+..|+..+.++++.+++.+ +++|.+|+.. +... -..+. .+.+.|...+
T Consensus 69 VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~---~k~I~~SS~~-vy~~~~~~~~~e~~~~~~~~~~p~~~Y 144 (312)
T d2b69a1 69 IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG---ARLLLASTSE-VYGDPEVHPQSEDYWGHVNPIGPRACY 144 (312)
T ss_dssp EEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT---CEEEEEEEGG-GGBSCSSSSBCTTCCCBCCSSSTTHHH
T ss_pred EEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcC---CcEEEEEChh-eecCCCCCCCCccccCCCCCCCCccHH
Confidence 9999986432 123566778999999999999999875 4677665421 1100 00000 0011234468
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
+.+......+...+++..|++...+|...|+|.+.
T Consensus 145 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~ 179 (312)
T d2b69a1 145 DEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRM 179 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCC
Confidence 88988888898889999999999999999999654
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=5.9e-12 Score=113.90 Aligned_cols=175 Identities=15% Similarity=0.093 Sum_probs=107.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhH-HHHHHHhcccCC-CCcceEEeCChhhhcC--C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GVKMELVDAAFP-LLKGVVATTDAVEACT--G 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~-~~~~dl~~~~~~-~~~~v~~~~~~~~al~--~ 81 (320)
|||+||||+||||++++..|+++|+ +|+++|+.....+.. .....+...... ...++.....+.++++ +
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 73 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH-------DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHA 73 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccC
Confidence 7999999999999999999999997 899998742111111 011111111111 1123333334556666 7
Q ss_pred CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH----HHHHCCCCCCCcEEE
Q 020875 82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPAKNITC 155 (320)
Q Consensus 82 aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~----~~~~~~~~~~~~i~~ 155 (320)
+|+|||+|+.+..+ ..+..+.+..|+..++++++.+++++ .. ++|..|... +.... ..+..+...+...++
T Consensus 74 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~-v~-~~i~~Ss~~-vy~~~~~~~~~e~~~~~~p~~~Y~ 150 (338)
T d1udca_ 74 IDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VK-NFIFSSSAT-VYGDQPKIPYVESFPTGTPQSPYG 150 (338)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CC-EEEEEEEGG-GGCSCCSSSBCTTSCCCCCSSHHH
T ss_pred CCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhC-CC-EEEecCcce-EEccccccccccccccCCCcchHH
Confidence 89999999864311 12456788999999999999999985 32 455555332 21000 000001122344678
Q ss_pred eehhhHHHHHHHHH-HHcCCCCCCeeeeEEEcCCCC
Q 020875 156 LTRLDHNRALGQIS-EKLNVQVSDVKNVIIWGNHSS 190 (320)
Q Consensus 156 ~t~ld~~r~~~~~a-~~l~v~~~~v~~~~v~G~hg~ 190 (320)
.+.+...++....+ +..+.+...+|...|+|.+..
T Consensus 151 ~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~ 186 (338)
T d1udca_ 151 KSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPS 186 (338)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTT
T ss_pred HHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCC
Confidence 88888777655444 445777777788888997653
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=4.1e-12 Score=115.99 Aligned_cols=175 Identities=10% Similarity=0.024 Sum_probs=110.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc---cchhHHHHHHHh--cccC-CCCcceEEeCChhhhc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA---AEALNGVKMELV--DAAF-PLLKGVVATTDAVEAC 79 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~---~~~~~~~~~dl~--~~~~-~~~~~v~~~~~~~~al 79 (320)
++++||||+||||++|+..|++.|+ +|+.+|+..+ .+++.....+.. +... ....++....++.+.+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY-------EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRIL 74 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEECC---------------------CCEEECCCCSSCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-------EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHH
Confidence 3566999999999999999999997 8999998531 111111111100 0000 0112333333456667
Q ss_pred CCC--cEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCC-eEEEEEcCcchhhH---H-HHHHHCCCCCC
Q 020875 80 TGV--NIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPN-CKVLVVANPANTNA---L-ILKEFAPSIPA 150 (320)
Q Consensus 80 ~~a--DvVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~-~~viv~snP~~~~~---~-~~~~~~~~~~~ 150 (320)
+++ |+|+|+|+.... +..+....+..|+.++.++++++++++-++ .++|.+|... +-. . .+.| ...+.|
T Consensus 75 ~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~-vYG~~~~~~~~E-~~~~~P 152 (357)
T d1db3a_ 75 REVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSE-LYGLVQEIPQKE-TTPFYP 152 (357)
T ss_dssp HHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGG-GGTTCCSSSBCT-TSCCCC
T ss_pred hccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchh-hhCCCCCCCcCC-CCCCCC
Confidence 655 999999987542 234566778899999999999999875322 4566665321 100 0 0011 111234
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
...|+.|++....+...+++..+++...+|...|+|...
T Consensus 153 ~~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~ 191 (357)
T d1db3a_ 153 RSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR 191 (357)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred CChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCC
Confidence 457889999888888889999999999999887889653
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.14 E-value=2.2e-12 Score=118.09 Aligned_cols=180 Identities=12% Similarity=0.103 Sum_probs=111.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC----C-CcceEEeCChhhhcC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----L-LKGVVATTDAVEACT 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~----~-~~~v~~~~~~~~al~ 80 (320)
|||+||||+||||++|+..|++.|+. .++++|+....... ..+.+.... + ..+++....+.+.++
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~------vv~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 70 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQD------TVVNIDKLTYAGNL----ESLSDISESNRYNFEHADICDSAEITRIFE 70 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC------EEEEEECCCTTCCG----GGGTTTTTCTTEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCC------EEEEEeCCCccccH----HHHHhhhhcCCcEEEEccCCCHHHHHHHHH
Confidence 79999999999999999999998872 46778864211111 111111100 0 012211122344444
Q ss_pred --CCcEEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHhhhcCC-------CeEEEEEcCcchhhHHH--HH--H--
Q 020875 81 --GVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAP-------NCKVLVVANPANTNALI--LK--E-- 143 (320)
Q Consensus 81 --~aDvVi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i~~~~~~-------~~~viv~snP~~~~~~~--~~--~-- 143 (320)
++|+|||+|+.+..+. .+..+.+..|+.++.++++.+.++... ..++|.+|+.. +.... .. +
T Consensus 71 ~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~ 149 (361)
T d1kewa_ 71 QYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE-VYGDLPHPDEVENS 149 (361)
T ss_dssp HHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG-GGCCCCCGGGSCTT
T ss_pred hCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccce-eeCCCccCCccccc
Confidence 5899999998643111 234567899999999999999876310 12566665421 11000 00 0
Q ss_pred -------HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC--Ccccccc
Q 020875 144 -------FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS--SSQYPDV 196 (320)
Q Consensus 144 -------~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg--~~~~~~~ 196 (320)
......|..+||.+.+...++...+++..+++...+|...|+|.++ ++.+|.+
T Consensus 150 ~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~ 211 (361)
T d1kewa_ 150 VTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLV 211 (361)
T ss_dssp SCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHH
T ss_pred cCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHH
Confidence 0001123345899999999999999999999999999999999876 3456655
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.11 E-value=5.1e-11 Score=109.67 Aligned_cols=176 Identities=12% Similarity=0.158 Sum_probs=107.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc--------------hhHHH---HHHHhcccCC-CCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE--------------ALNGV---KMELVDAAFP-LLK 67 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~--------------~~~~~---~~dl~~~~~~-~~~ 67 (320)
|||+||||+||||++++..|++.|+ +|+.+|...... ..... ...+.+.... ...
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~-------~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 74 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNY-------EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVG 74 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEES
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEc
Confidence 7999999999999999999999997 899998421000 00000 0001111000 011
Q ss_pred ceEEeCChhhhcCC--CcEEEEeCCCCCCC--CCC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH
Q 020875 68 GVVATTDAVEACTG--VNIAVMVGGFPRKE--GME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI 140 (320)
Q Consensus 68 ~v~~~~~~~~al~~--aDvVi~~ag~~~~~--~~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~ 140 (320)
+++....+.+++++ .|+|||+|+....+ ..+ ..+....|+..+.++++.+++++ ....++..|........-
T Consensus 75 Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~~~~i~~ss~~~~~~~~ 153 (393)
T d1i24a_ 75 DICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG-EECHLVKLGTMGEYGTPN 153 (393)
T ss_dssp CTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGGCCCS
T ss_pred cCCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhc-cccceeeccccccccccc
Confidence 22222234555654 59999999864311 112 33567899999999999999997 555555555432110000
Q ss_pred HH-HH--------------CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 141 LK-EF--------------APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 141 ~~-~~--------------~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.. .. .....|...|+.+++....+...+++..+++...+|...|+|.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~ 217 (393)
T d1i24a_ 154 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT 217 (393)
T ss_dssp SCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred cccccccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCc
Confidence 00 00 000122235788888888888888999999999999988999643
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.10 E-value=6.3e-11 Score=105.98 Aligned_cols=173 Identities=12% Similarity=0.081 Sum_probs=104.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCCC-CcceEEeCChhhhcCCC--
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFPL-LKGVVATTDAVEACTGV-- 82 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~~-~~~v~~~~~~~~al~~a-- 82 (320)
||+||||+||||++++..|+++|+ +|+.+|+........ ....+... ...+ ..++....++.++++++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~-------~V~~id~~~~~~~~~-~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~ 73 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI-------DLIVFDNLSRKGATD-NLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 73 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSTTHHH-HHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC-------EEEEEECCCcccchh-HHHHhhccCCcEEEEcccCCHHHHHHHHHhcCC
Confidence 899999999999999999999997 899888532111111 11111111 1111 12333333456667654
Q ss_pred cEEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH-----------------
Q 020875 83 NIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE----------------- 143 (320)
Q Consensus 83 DvVi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~----------------- 143 (320)
|+|||+|+...... .+..+....|+.+++++++.+.+.. .. +++++++........ ..
T Consensus 74 d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~-~~i~~sS~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 150 (338)
T d1orra_ 74 DSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN-SN-CNIIYSSTNKVYGDL-EQYKYNETETRYTCVDKPN 150 (338)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-TT-CEEEEEEEGGGGTTC-TTSCEEECSSCEEETTCTT
T ss_pred ceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhccc-cc-ccccccccccccccc-ccccccccccccccccccc
Confidence 99999997653211 2346778899999999999999986 33 344444322111000 00
Q ss_pred ---HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCC
Q 020875 144 ---FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS 190 (320)
Q Consensus 144 ---~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~ 190 (320)
..+.+.+...++.+......+....++.++.....++.+.++|.++.
T Consensus 151 ~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
T d1orra_ 151 GYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQF 200 (338)
T ss_dssp CBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCC
T ss_pred CcccCCccccccccccccchhhhhhhhhhhccCcccccccccceeecccc
Confidence 00001122234566666677777788888888777777667776553
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.10 E-value=1.3e-11 Score=111.86 Aligned_cols=176 Identities=12% Similarity=0.060 Sum_probs=110.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~~a 82 (320)
.||||+||||+||||++|+..|++.|+- ..++.+|......... ....+...... ...++.....+.+++++.
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~-----v~v~~~d~~~~~~~~~-~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~ 74 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPD-----VHVTVLDKLTYAGNKA-NLEAILGDRVELVVGDIADAELVDKLAAKA 74 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTT-----CEEEEEECCCTTCCGG-GTGGGCSSSEEEEECCTTCHHHHHHHHTTC
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCC-----eEEEEEeCCCccccHH-HHHHhhcCCeEEEEccCCCHHHHHHHHhhh
Confidence 4789999999999999999999998862 2566666431100000 00011110000 012222233467778999
Q ss_pred cEEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH-HHHH--------------C
Q 020875 83 NIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI-LKEF--------------A 145 (320)
Q Consensus 83 DvVi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~-~~~~--------------~ 145 (320)
|.|+|.|+...... .+..+.+..|+..+.++++.+.+.+ . ++++++... +.... ..+. .
T Consensus 75 ~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~-~--k~i~~ss~~-vyg~~~~~~~~~~~~~~~~~~~~e~ 150 (346)
T d1oc2a_ 75 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD-I--RFHHVSTDE-VYGDLPLREDLPGHGEGPGEKFTAE 150 (346)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT-C--EEEEEEEGG-GGCCBCCGGGSTTTTCSTTSSBCTT
T ss_pred hhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhcccc-c--cccccccce-EecccCccccccccccCcccccccC
Confidence 99999987653211 2345678899999999999999886 3 445554221 10000 0000 0
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
+...|...||.+.+...++...+++..+++...+|...|+|.+.
T Consensus 151 ~~~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~ 194 (346)
T d1oc2a_ 151 TNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ 194 (346)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence 11123346888999998988888999999999999999999654
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.7e-10 Score=96.79 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=71.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~al~~aD 83 (320)
++||+|+||+|++|++++..|+.+|+ +|.++++++ +++... ...... ...++....++.++++++|
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-------~V~~~~R~~--~~~~~~----~~~~~~~~~gD~~d~~~l~~al~~~d 69 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGY-------EVTVLVRDS--SRLPSE----GPRPAHVVVGDVLQAADVDKTVAGQD 69 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCG--GGSCSS----SCCCSEEEESCTTSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEEcCh--hhcccc----cccccccccccccchhhHHHHhcCCC
Confidence 45999999999999999999999997 899999864 222110 111000 1123333346788999999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
+||+++|........ ..+...++++++.+++.+- .++|.+|
T Consensus 70 ~vi~~~g~~~~~~~~-----~~~~~~~~~l~~aa~~~~v--~r~i~~s 110 (205)
T d1hdoa_ 70 AVIVLLGTRNDLSPT-----TVMSEGARNIVAAMKAHGV--DKVVACT 110 (205)
T ss_dssp EEEECCCCTTCCSCC-----CHHHHHHHHHHHHHHHHTC--CEEEEEC
T ss_pred EEEEEeccCCchhhh-----hhhHHHHHHHHHHHHhcCC--CeEEEEe
Confidence 999998864322111 2345678889999988762 2456555
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=7.4e-11 Score=106.37 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=106.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc-ccCC-CCcceEEeCChh-hhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AAFP-LLKGVVATTDAV-EACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~-~~~~-~~~~v~~~~~~~-~al~~a 82 (320)
|||+||||+||||++++..|+.+|+. +|+.+|+... ... .+.+ .... ...+++...+.. .+++++
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~------~V~~ld~~~~--~~~----~~~~~~~~~~i~~Di~~~~~~~~~~~~~~ 68 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHY------EVYGLDIGSD--AIS----RFLNHPHFHFVEGDISIHSEWIEYHVKKC 68 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC------EEEEEESCCG--GGG----GGTTCTTEEEEECCTTTCSHHHHHHHHHC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCC------EEEEEeCCCc--chh----hhccCCCeEEEECccCChHHHHHHHHhCC
Confidence 79999999999999999999988863 8999997531 111 1111 1000 012222222223 367789
Q ss_pred cEEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH---HHHHH------CCCCCCC
Q 020875 83 NIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---ILKEF------APSIPAK 151 (320)
Q Consensus 83 DvVi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~---~~~~~------~~~~~~~ 151 (320)
|+|||+|+...... ....+.+..|+..+.++++.+.+.. .+.++.+.....-.. ...+. .+...|+
T Consensus 69 d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~---~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 145 (342)
T d2blla1 69 DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR---KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPR 145 (342)
T ss_dssp SEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT---CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGG
T ss_pred CccccccccccccccccCCcccccccccccccccccccccc---ccccccccccccccccccccccccccccccccCCCc
Confidence 99999998654211 2334678899999999999999875 344555433211000 00000 0001123
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCC
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS 190 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~ 190 (320)
..++.+++...++...+++..|++...++...++|....
T Consensus 146 ~~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~ 184 (342)
T d2blla1 146 WIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 184 (342)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCC
T ss_pred chhhhcccchhhhhhhhhcccCceeEEeecccccccccc
Confidence 457888888999998999999998887877777775443
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=3.2e-11 Score=107.46 Aligned_cols=157 Identities=13% Similarity=0.176 Sum_probs=103.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc--CCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC--TGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al--~~a 82 (320)
++||+||||+||||++|+..|++.|+ +++++|...+ .|+.+.. ...+.+ .+.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~-------~vi~~~~~~~--------~~~~~~~-----------~~~~~~~~~~~ 55 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD-------VELVLRTRDE--------LNLLDSR-----------AVHDFFASERI 55 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-------EEEECCCTTT--------CCTTCHH-----------HHHHHHHHHCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcC-------EEEEecCchh--------ccccCHH-----------HHHHHHhhcCC
Confidence 35999999999999999999999887 5666665421 1222221 111222 357
Q ss_pred cEEEEeCCCCCCC---CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH----HHHH----CCCCCCC
Q 020875 83 NIAVMVGGFPRKE---GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEF----APSIPAK 151 (320)
Q Consensus 83 DvVi~~ag~~~~~---~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~----~~~~----~~~~~~~ 151 (320)
|+|+|+|+..... .....+++..|+..+.++++.+++++ - .++|..|. ..+.... +.+. .+-.+++
T Consensus 56 d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-v-~~~i~~SS-~~vyg~~~~~~~~E~~~~~~~~~~~~ 132 (315)
T d1e6ua_ 56 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-V-NKLLFLGS-SCIYPKLAKQPMAESELLQGTLEPTN 132 (315)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CEEEEECC-GGGSCTTCCSSBCGGGTTSSCCCGGG
T ss_pred CEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEECC-ceEcCCCCCCCccCCccccCCCCCCC
Confidence 8999988653211 12355678899999999999999875 2 24555553 3221100 0000 0011222
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCC
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS 190 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~ 190 (320)
..|+.+++...++...+++..|++..-+|...|+|.++.
T Consensus 133 ~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~ 171 (315)
T d1e6ua_ 133 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDN 171 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCC
Confidence 358899999999988889999999999999999998753
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.04 E-value=4.1e-11 Score=107.41 Aligned_cols=185 Identities=14% Similarity=0.072 Sum_probs=114.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc-ccCC-CCcceEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AAFP-LLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~-~~~~-~~~~v~~~~~~~~al~~aD 83 (320)
|||+||||+||||++++..|+++|+.- ....++..+|......... ....+.. .... ...+............+.|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v-~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d 78 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPD-VPADEVIVLDSLTYAGNRA-NLAPVDADPRLRFVHGDIRDAGLLARELRGVD 78 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTT-SCCSEEEEEECCCTTCCGG-GGGGGTTCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCc-cCCceEEEEeCCCccccHh-HhhhhhcCCCeEEEEeccccchhhhccccccc
Confidence 799999999999999999999987631 1123678888642111111 0011110 0000 0111111123455678999
Q ss_pred EEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEEee
Q 020875 84 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITCLT 157 (320)
Q Consensus 84 vVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~~t 157 (320)
.|+|+|+.+... .....+.+..|+.++.++++.+.++. . .++|..|+.. +.-. -+.+. ....|...++.+
T Consensus 79 ~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~-~-~~~I~~Ss~~-~yg~~~~~~~~E~-~~~~p~~~Y~~s 154 (322)
T d1r6da_ 79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-V-GRVVHVSTNQ-VYGSIDSGSWTES-SPLEPNSPYAAS 154 (322)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT-C-CEEEEEEEGG-GGCCCSSSCBCTT-SCCCCCSHHHHH
T ss_pred eEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcC-C-ceEEEeecce-eecCCCCCCCCCC-CCCCCCCHHHHH
Confidence 999999765321 12345567899999999999999886 3 3566665432 1000 00110 112234468889
Q ss_pred hhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC--Ccccccc
Q 020875 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHS--SSQYPDV 196 (320)
Q Consensus 158 ~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg--~~~~~~~ 196 (320)
......+...+++..+++...+|...|+|.+. +..+|.|
T Consensus 155 K~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~ 195 (322)
T d1r6da_ 155 KAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLF 195 (322)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHH
Confidence 88888888889999999999999999999654 4456655
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.97 E-value=2e-10 Score=105.25 Aligned_cols=176 Identities=17% Similarity=0.131 Sum_probs=106.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCc-------cchhHHHHHHHhcccCC----CCc-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPA-------AEALNGVKMELVDAAFP----LLK----- 67 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~-------~~~~~~~~~dl~~~~~~----~~~----- 67 (320)
-|||+||||+||||++|+..|++ .++ +|+++|+-.. .+..+.....+...... ...
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~-------~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNH-------SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALE 74 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCC-------EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCC-------EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEE
Confidence 37999999999999999998885 565 8999984110 01111111122221111 011
Q ss_pred --ceEEeCChhhh---cCCCcEEEEeCCCCCCCC--CCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh----
Q 020875 68 --GVVATTDAVEA---CTGVNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT---- 136 (320)
Q Consensus 68 --~v~~~~~~~~a---l~~aDvVi~~ag~~~~~~--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~---- 136 (320)
++.....+.++ .+++|+|||+|+...... .........|+..+.++++.+++.+ .. .++..+.....
T Consensus 75 ~~Di~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~-~~-~~~~~~s~~~~~~~~ 152 (383)
T d1gy8a_ 75 VGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK-CD-KIIFSSSAAIFGNPT 152 (383)
T ss_dssp ESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CC-EEEEEEEGGGTBSCC
T ss_pred ECcccCHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccC-Cc-ccccccccccccccc
Confidence 12111112333 357899999998643211 2344567889999999999999986 43 33333322211
Q ss_pred hHHHHHHH-----CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 137 NALILKEF-----APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 137 ~~~~~~~~-----~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
.-....+. -....|...|+.+.+...++...+.+..|++...+|...++|...
T Consensus 153 ~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~ 210 (383)
T d1gy8a_ 153 MGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHE 210 (383)
T ss_dssp C-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCT
T ss_pred cccccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCc
Confidence 00000000 011223456888999899999999999999999999999999544
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.93 E-value=1.3e-09 Score=98.18 Aligned_cols=175 Identities=15% Similarity=0.111 Sum_probs=110.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc--hhHHHHHHHhcc-cCCC----CcceEEeCChh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE--ALNGVKMELVDA-AFPL----LKGVVATTDAV 76 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~--~~~~~~~dl~~~-~~~~----~~~v~~~~~~~ 76 (320)
+|++|+||||+||+|++++..|.+.|+ +|..+|+..... .+.. ...+... ..+. ..+........
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-------~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~d~~~~~ 86 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQ-------KVVGLDNFATGHQRNLDE-VRSLVSEKQWSNFKFIQGDIRNLDDCN 86 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSSCCHHHHHH-HHHHSCHHHHTTEEEEECCTTSHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-------EEEEEECCCCcchhhHHH-HHHhhhhcccCCeeEEeeccccccccc
Confidence 567999999999999999999999998 899998632111 1111 1111100 0000 01111111234
Q ss_pred hhcCCCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHH----HHHHCCCCCC
Q 020875 77 EACTGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALI----LKEFAPSIPA 150 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~----~~~~~~~~~~ 150 (320)
....+.+.|++++.....+ ..+....+..|+.++.++++.+.+++ .. ++|..|... +.-.. ..+. .-..|
T Consensus 87 ~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~-~~i~~SS~~-vyg~~~~~~~~E~-~~~~p 162 (341)
T d1sb8a_ 87 NACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-VQ-SFTYAASSS-TYGDHPGLPKVED-TIGKP 162 (341)
T ss_dssp HHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CS-EEEEEEEGG-GGTTCCCSSBCTT-CCCCC
T ss_pred cccccccccccccccccccccccCccchhheeehhHHHHHHHHHhcC-Cc-eEEEcccce-eeCCCCCCCccCC-CCCCC
Confidence 5567889999988654311 23456678899999999999999875 32 455555322 11000 0010 11223
Q ss_pred CcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCCC
Q 020875 151 KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSS 190 (320)
Q Consensus 151 ~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg~ 190 (320)
...|+.+.+...++...+++..+++...+|...|+|.++.
T Consensus 163 ~~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~ 202 (341)
T d1sb8a_ 163 LSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD 202 (341)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence 3468899999999988999999999999997777897653
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=7.8e-10 Score=99.88 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=101.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH--HHHHHhcccCC-CCcceEEeCChhhhcC--C
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG--VKMELVDAAFP-LLKGVVATTDAVEACT--G 81 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~--~~~dl~~~~~~-~~~~v~~~~~~~~al~--~ 81 (320)
.|+||||+||||++++..|+++|+ +|+.+|+... ..... ....+.+.... ...+++...++.++++ +
T Consensus 3 ~ILVTGatGfIG~~lv~~Ll~~g~-------~V~~~d~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 74 (347)
T d1z45a2 3 IVLVTGGAGYIGSHTVVELIENGY-------DCVVADNLSN-STYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYK 74 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCSS-CCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCcC-------eEEEEECCCC-cchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccC
Confidence 589999999999999999999997 8999986421 11111 11111111111 1122222223444444 7
Q ss_pred CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH---H-----HHHHCCCCCCC
Q 020875 82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL---I-----LKEFAPSIPAK 151 (320)
Q Consensus 82 aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~---~-----~~~~~~~~~~~ 151 (320)
+|+|||+|+..... ......+...|+..+.++++.+++.. .. ++|+.|... +... . +.+. ....+.
T Consensus 75 ~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~-i~-~~i~~SS~~-vyg~~~~~~~~~~~~e~-~~~~p~ 150 (347)
T d1z45a2 75 IDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN-VS-KFVFSSSAT-VYGDATRFPNMIPIPEE-CPLGPT 150 (347)
T ss_dssp CCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-CC-EEEEEEEGG-GGCCGGGSTTCCSBCTT-SCCCCC
T ss_pred CCEEEEccccccccccccCcccccccchhhhHHHHHHHHhcc-cc-eEEeeccee-eecCcccCCCCCccccc-cCCCCC
Confidence 89999999865321 22445677899999999999999875 32 455555432 2100 0 0000 111233
Q ss_pred cEEEeehhhHHHHHHHHHH--HcCCCCCCeeeeEEEcCC
Q 020875 152 NITCLTRLDHNRALGQISE--KLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~--~l~v~~~~v~~~~v~G~h 188 (320)
..|+.++....++...+.+ ..+.+...+|...|+|.+
T Consensus 151 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~ 189 (347)
T d1z45a2 151 NPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAH 189 (347)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCC
T ss_pred ChhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeec
Confidence 4678888887777666654 345556677777778754
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.2e-09 Score=93.36 Aligned_cols=116 Identities=11% Similarity=0.108 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+.+||+|+||+|++|++++..|++++.+. +|.++++++....... ...+.. ...++....++.++++++|
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~-----~v~~~~R~~~~~~~~~-~~~i~~----~~~D~~~~~~~~~~~~~~d 82 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLFS-----KVTLIGRRKLTFDEEA-YKNVNQ----EVVDFEKLDDYASAFQGHD 82 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCS-----EEEEEESSCCCCCSGG-GGGCEE----EECCGGGGGGGGGGGSSCS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCCC-----EEEEEecChhhhcccc-cceeee----eeecccccccccccccccc
Confidence 34699999999999999999999888643 7888888642111100 000000 0012222236788899999
Q ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 84 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 84 vVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+||+++|... ...+..++...|.....++++.+.+.+ .. +++.+|.
T Consensus 83 ~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~-v~-~fi~~Ss 128 (232)
T d2bkaa1 83 VGFCCLGTTR-GKAGAEGFVRVDRDYVLKSAELAKAGG-CK-HFNLLSS 128 (232)
T ss_dssp EEEECCCCCH-HHHHHHHHHHHHTHHHHHHHHHHHHTT-CC-EEEEECC
T ss_pred cccccccccc-cccchhhhhhhcccccceeeecccccC-cc-ccccCCc
Confidence 9999998642 122355677889999999999998865 32 4555553
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.8e-10 Score=102.51 Aligned_cols=171 Identities=12% Similarity=-0.019 Sum_probs=105.5
Q ss_pred CEE-EEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc---chhHHHHHHHhcccCCCCcceEE-------eCC
Q 020875 6 VRV-LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA---EALNGVKMELVDAAFPLLKGVVA-------TTD 74 (320)
Q Consensus 6 ~kI-~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~---~~~~~~~~dl~~~~~~~~~~v~~-------~~~ 74 (320)
+|| +||||+||||++++..|+++|+ +|+.+|+..+. .++.... .+.......++.. ...
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-------~V~~i~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Dl~d~~~ 70 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY-------EVHGIVRRSSSFNTGRIEHLY---KNPQAHIEGNMKLHYGDLTDSTC 70 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCTTTGGGC------------CEEEEECCTTCHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC-------EEEEEECCCcccchhhHHHHh---hchhhhccCCcEEEEeecCCchh
Confidence 489 7999999999999999999998 89999985321 1111100 0111011112211 112
Q ss_pred hhhhcC--CCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCC-eEEEEEcCcchhhH---H-HHHHHC
Q 020875 75 AVEACT--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPN-CKVLVVANPANTNA---L-ILKEFA 145 (320)
Q Consensus 75 ~~~al~--~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~-~~viv~snP~~~~~---~-~~~~~~ 145 (320)
...++. +.++|+++++..... .....+....|+..+.++.+.+++++..+ .++|.+|.. .+-- . -+.+ .
T Consensus 71 ~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~-~vyg~~~~~~~~E-~ 148 (347)
T d1t2aa_ 71 LVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTS-ELYGKVQEIPQKE-T 148 (347)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEG-GGTCSCSSSSBCT-T
T ss_pred hHHHHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecch-heecCCCCCCCCC-C
Confidence 333443 567888887654311 12355667899999999999999876333 356666532 1100 0 0011 1
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
..+.|...||.+++...++...+++..+++...++.+.|+|..
T Consensus 149 ~~~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~ 191 (347)
T d1t2aa_ 149 TPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR 191 (347)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence 1223445789999989898888889999988888888788864
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=9e-10 Score=99.30 Aligned_cols=178 Identities=14% Similarity=0.081 Sum_probs=102.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc--------chhHHHHHHHhcccCC-CCcceEEeCChh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--------EALNGVKMELVDAAFP-LLKGVVATTDAV 76 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~--------~~~~~~~~dl~~~~~~-~~~~v~~~~~~~ 76 (320)
.||+||||+||||++|+..|+++|+ +|+.+|+.... +..+. ...+.+.... ...+++....+.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~-------~V~~ld~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~l~ 74 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY-------LPVVIDNFHNAFRGGGSLPESLRR-VQELTGRSVEFEEMDILDQGALQ 74 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-------CEEEEECSSSSCBCSSSSBHHHHH-HHHHHTCCCEEEECCTTCHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC-------EEEEEECCCccccccccchHHHHH-HHHhcCCCcEEEEeecccccccc
Confidence 4899999999999999999999987 78888852110 11110 1111111110 012222222344
Q ss_pred hhcC--CCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH---HH-CCCC
Q 020875 77 EACT--GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK---EF-APSI 148 (320)
Q Consensus 77 ~al~--~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~---~~-~~~~ 148 (320)
+++. +.|+|+|+|+.+... ...+.+.+..|+..+.++++.+++++ .. ++++.|... +....-. .. ....
T Consensus 75 ~~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~-v~-~~i~~ss~~-~~~~~~~~~~~~~~~~~ 151 (346)
T d1ek6a_ 75 RLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG-VK-NLVFSSSAT-VYGNPQYLPLDEAHPTG 151 (346)
T ss_dssp HHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CC-EEEEEEEGG-GGCSCSSSSBCTTSCCC
T ss_pred ccccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcC-cc-cccccccce-eeecccccccccccccc
Confidence 4454 455788998865321 12355678899999999999999886 32 455554332 1100000 00 0001
Q ss_pred CCCcEEEeehhhHHHHHHHHHHH-cCCCCCCeeeeEEEcCCCCcccc
Q 020875 149 PAKNITCLTRLDHNRALGQISEK-LNVQVSDVKNVIIWGNHSSSQYP 194 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~-l~v~~~~v~~~~v~G~hg~~~~~ 194 (320)
.+...++.+.+-..+....+++. .+.+...+|...++|.+....++
T Consensus 152 ~~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~ 198 (346)
T d1ek6a_ 152 GCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIG 198 (346)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCC
T ss_pred ccCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcC
Confidence 12234666666666665555554 57888888888889977654443
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=98.81 E-value=1.6e-08 Score=90.89 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=76.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH--HHHhcccC---CCCcceEEeCChhhhcC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK--MELVDAAF---PLLKGVVATTDAVEACT 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~--~dl~~~~~---~~~~~v~~~~~~~~al~ 80 (320)
+||+||||+||||++++..|+++|+ +|+...++. ++..... .+...... ....++.....+.+++.
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~-------~V~~~vR~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 82 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGY-------KVRGTARSA--SKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK 82 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEeCCc--hhHHHHHHhhhccccccccEEEeccccchhhhhhhcc
Confidence 6999999999999999999999997 787666543 2222111 11111110 01123333345667899
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
++|.|++.++... ...+...+...|+..+.++++.++++. .-.++|+.|.
T Consensus 83 ~~~~v~~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~-~v~~~i~~SS 132 (342)
T d1y1pa1 83 GAAGVAHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATP-SVKRFVLTSS 132 (342)
T ss_dssp TCSEEEECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCT-TCCEEEEECC
T ss_pred cchhhhhhccccc-ccccccccccchhhhHHHHHHhhhccc-cccccccccc
Confidence 9999999987643 334566677889999999999999874 2234554443
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.81 E-value=2.9e-10 Score=102.03 Aligned_cols=176 Identities=9% Similarity=-0.041 Sum_probs=104.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc---cchhHHHHHHHhcccCCC----CcceEEeCChhhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA---AEALNGVKMELVDAAFPL----LKGVVATTDAVEA 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~---~~~~~~~~~dl~~~~~~~----~~~v~~~~~~~~a 78 (320)
+|++||||+||||+||+..|+++|+ +|+.+|+..+ .+++.....+..+..... ..++.......++
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~ 74 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGY-------EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRW 74 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcC-------EEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHH
Confidence 5899999999999999999999998 8999997431 112211111111110000 0111111123333
Q ss_pred c--CCCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcC--CCeEEEEEcCcchhhHHH---HHHHCCCCC
Q 020875 79 C--TGVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAA--PNCKVLVVANPANTNALI---LKEFAPSIP 149 (320)
Q Consensus 79 l--~~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~snP~~~~~~~---~~~~~~~~~ 149 (320)
+ .+.|+|||+|+..... ..+..+....|......+.+.+++... .....++.++........ ..+. ....
T Consensus 75 ~~~~~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E~-~~~~ 153 (339)
T d1n7ha_ 75 IDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSET-TPFH 153 (339)
T ss_dssp HHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTT-SCCC
T ss_pred HhhhccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCCCC-CCCC
Confidence 3 3679999999865321 123456778888888888888776431 112233333222111000 0010 1123
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
|...++.+.+....+...+++..+++...+|...|+|.++
T Consensus 154 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~ 193 (339)
T d1n7ha_ 154 PRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRR 193 (339)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CcchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCC
Confidence 4456889999898898889999999999999988899764
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.80 E-value=1.1e-07 Score=79.16 Aligned_cols=115 Identities=15% Similarity=0.205 Sum_probs=74.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--------------CCcceEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--------------LLKGVVA 71 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--------------~~~~v~~ 71 (320)
|||+|+| .|+||.++|..|+..|+ +|..+|.++ ++++ .+.....+ ....+..
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~-------~V~g~D~n~--~~i~----~ln~g~~p~~e~~~~~~l~~~~~~~~~~~ 66 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGH-------EVIGVDVSS--TKID----LINQGKSPIVEPGLEALLQQGRQTGRLSG 66 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHTTCCSSCCTTHHHHHHHHHHTTCEEE
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCC-------cEEEEeCCH--HHHH----HhcccCCcccchhhhhhhhhhhccccccc
Confidence 7999999 69999999999999997 899999874 3332 22222111 1246778
Q ss_pred eCChhhhcCCCcEEEEeCCCCCCCCCC-HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc-CcchhhH
Q 020875 72 TTDAVEACTGVNIAVMVGGFPRKEGME-RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPANTNA 138 (320)
Q Consensus 72 ~~~~~~al~~aDvVi~~ag~~~~~~~~-r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s-nP~~~~~ 138 (320)
+++..++++++|+++++.+.|.....+ ....+. .....+.+.++... ++..+|+-| -|.+...
T Consensus 67 ~~~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~---~~~~~i~~~~~~~~-~~~liii~STv~pGtt~ 131 (202)
T d1mv8a2 67 TTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIE---TVCREIGFAIREKS-ERHTVVVRSTVLPGTVN 131 (202)
T ss_dssp ESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHTTCC-SCCEEEECSCCCTTHHH
T ss_pred CCCHHHHHhhCCEEEEecCccccccccccchhhh---hhhhhhhheeeccc-CCcceeeccccCCcchh
Confidence 889999999999999999888643322 112221 23344444554443 555555543 4555443
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=2.5e-08 Score=82.68 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=75.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHh----c---ccC------------CC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV----D---AAF------------PL 65 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~----~---~~~------------~~ 65 (320)
-.||+|+| +|.+|+.+|..++..|+ +|+++|+++ +.++.....+. . ... ..
T Consensus 4 IkkvaViG-aG~mG~~iA~~~a~~G~-------~V~l~D~~~--~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 73 (192)
T d1f0ya2 4 VKHVTVIG-GGLMGAGIAQVAAATGH-------TVVLVDQTE--DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKT 73 (192)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred eEEEEEEC-cCHHHHHHHHHHHhCCC-------cEEEEECCh--HHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHH
Confidence 35999999 59999999999999998 899999975 22221111111 0 000 01
Q ss_pred CcceEEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 66 ~~~v~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
...+..++++.+++++||+||-+.- +|.+.-+++...+++++++++ |++||....
T Consensus 74 l~~i~~~~d~~~a~~~ad~ViEav~--------------E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l 128 (192)
T d1f0ya2 74 LSTIATSTDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHT--IFASNTSSL 128 (192)
T ss_dssp HHTEEEESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTC--EEEECCSSS
T ss_pred HhhccccchhHhhhcccceehhhcc--------------cchhHHHHHHHHHhhhcccCc--eeeccCccc
Confidence 2467888899999999999998751 245667899999999986664 677886544
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.75 E-value=2.6e-09 Score=94.91 Aligned_cols=172 Identities=12% Similarity=-0.027 Sum_probs=103.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CC-CCcceEEeCChhhhcC--C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP-LLKGVVATTDAVEACT--G 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~-~~~~v~~~~~~~~al~--~ 81 (320)
+||.||||+||||++++..|+++|+ +|+.+|+........ ...++.... .. ...++.....+.+.+. .
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~-------~V~~~~r~~~~~~~~-~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 72 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY-------RVHGLVARRSSDTRW-RLRELGIEGDIQYEDGDMADACSVQRAVIKAQ 72 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECCCSSCCCH-HHHHTTCGGGEEEEECCTTCHHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCCCcccHH-HHHHhcccCCcEEEEccccChHHhhhhhcccc
Confidence 4899999999999999999999997 899898754221111 111111000 00 0011111112222222 4
Q ss_pred CcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHH----HHHHHCCCCCCCcEEE
Q 020875 82 VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNAL----ILKEFAPSIPAKNITC 155 (320)
Q Consensus 82 aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~----~~~~~~~~~~~~~i~~ 155 (320)
.++++++++..... .....+.+..|+..+.++++.++++. ...+++..|. ..+... ...+. +...+...++
T Consensus 73 ~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~-~~~~~i~~Ss-~~~~~~~~~~~~~E~-~~~~p~~~Y~ 149 (321)
T d1rpna_ 73 PQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS-PETRFYQAST-SEMFGLIQAERQDEN-TPFYPRSPYG 149 (321)
T ss_dssp CSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTSEEEEEEE-GGGGCSCSSSSBCTT-SCCCCCSHHH
T ss_pred ccccccccccccccccccchHHHHhhhhhchHHHHHHHHHhC-CCcccccccc-hhhcCcccCCCCCCC-CCccccChhH
Confidence 66778777653321 23456678899999999999999986 4444554442 211000 00010 1112334578
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
.+.+...++...+++..+++...++...++|..
T Consensus 150 ~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~ 182 (321)
T d1rpna_ 150 VAKLYGHWITVNYRESFGLHASSGILFNHESPL 182 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEEecccCCC
Confidence 888888888888899999988888877788853
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=98.75 E-value=2.1e-09 Score=93.92 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=69.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~aD 83 (320)
|||+||||+||||++++..|.+.|+ ++.+++... + ...|+.+.. .+.+.++ +.|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~--------~v~~~~~~~-~----~~~Dl~~~~-----------~~~~~i~~~~~D 56 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN--------LIALDVHSK-E----FCGDFSNPK-----------GVAETVRKLRPD 56 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE--------EEEECTTCS-S----SCCCTTCHH-----------HHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--------EEEEECCCc-c----ccCcCCCHH-----------HHHHHHHHcCCC
Confidence 7999999999999999999988774 455665431 1 112443332 3445555 359
Q ss_pred EEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 84 IAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 84 vVi~~ag~~~~--~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+|||+||.... ...........|......+.+.+++.+ .+++++|+.
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~~ss~ 105 (298)
T d1n2sa_ 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG---AWVVHYSTD 105 (298)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT---CEEEEEEEG
T ss_pred EEEEecccccccccccCccccccccccccccchhhhhccc---ccccccccc
Confidence 99999986531 224455677889999999999998764 456666543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=98.72 E-value=4.9e-09 Score=94.35 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=73.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHH--HHhcccCCCCcceEEeCChhhhcC--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM--ELVDAAFPLLKGVVATTDAVEACT-- 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~--dl~~~~~~~~~~v~~~~~~~~al~-- 80 (320)
.+||+||||+||||++++..|++.|+ +|..+|++... ...... ...+.......+++....+.++++
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~ 78 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGA-------TVKGYSLTAPT--VPSLFETARVADGMQSEIGDIRDQNKLLESIREF 78 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCSS--SSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCCCc--cHHHHhhhhcccCCeEEEeeccChHhhhhhhhhc
Confidence 47999999999999999999999997 89999986532 111111 111100001122222223445554
Q ss_pred CCcEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 81 GVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
..|+|+|+|+.+... .....+....|+..+.++++.+++.. ....++..|
T Consensus 79 ~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~-~~~~~~~~s 130 (356)
T d1rkxa_ 79 QPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG-GVKAVVNIT 130 (356)
T ss_dssp CCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHC-CCCEEEEEC
T ss_pred hhhhhhhhhccccccccccCCccccccccccchhhhhhhhccc-ccccccccc
Confidence 458999998765321 12345677889999999999999986 333333333
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.70 E-value=1.3e-08 Score=85.60 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=95.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
.+.+|+||||+|++|++++..|+++|+. ..++.+.+++ ++.. ++.........++....+..++++++|
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~-----v~v~~~~R~~--~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~d 70 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDK-----FVAKGLVRSA--QGKE----KIGGEADVFIGDITDADSINPAFQGID 70 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTT-----CEEEEEESCH--HHHH----HTTCCTTEEECCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCc-----EEEEEEcCCH--HHHH----hccCCcEEEEeeeccccccccccccce
Confidence 4679999999999999999999998862 2454444432 2221 121111001122222235678899999
Q ss_pred EEEEeCCCCCCC---------------CCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 84 IAVMVGGFPRKE---------------GMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 84 vVi~~ag~~~~~---------------~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
.|||+++..... ..........|+...+.++....... .. .....+... .. .+..
T Consensus 71 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~~~-~~-------~~~~ 140 (252)
T d2q46a1 71 ALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-VK-HIVVVGSMG-GT-------NPDH 140 (252)
T ss_dssp EEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-CS-EEEEEEETT-TT-------CTTC
T ss_pred eeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccc-cc-ccccccccc-cC-------CCCc
Confidence 999998753210 01123345677888888888887775 32 333333211 10 0111
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeEEEcCCC
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHS 189 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~v~G~hg 189 (320)
|..............+...+.+..+++..-+|...++|.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~ 181 (252)
T d2q46a1 141 PLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEG 181 (252)
T ss_dssp GGGGGGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCT
T ss_pred ccccccccchhhhhhhhhhhhhcccccceeecceEEECCCc
Confidence 11111222333445566777788898888888777788653
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=9.7e-09 Score=89.83 Aligned_cols=165 Identities=18% Similarity=0.164 Sum_probs=104.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC------ChhhhcCC
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT------DAVEACTG 81 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~------~~~~al~~ 81 (320)
|+||||+||||++++..|+++|+. +|+.+|......+.. .+.+.. ..+..... .....+.+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~------~V~~~d~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGIT------DILVVDNLKDGTKFV----NLVDLN---IADYMDKEDFLIQIMAGEEFGD 68 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCC------CEEEEECCSSGGGGH----HHHTSC---CSEEEEHHHHHHHHHTTCCCSS
T ss_pred EEEecCccHHHHHHHHHHHhCCCC------eEEEEECCCCcchhh----cccccc---hhhhccchHHHHHHhhhhcccc
Confidence 899999999999999999998862 688888532211111 111111 00111100 11234578
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHH--HHHCCCCCCCcEEEeehh
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL--KEFAPSIPAKNITCLTRL 159 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~--~~~~~~~~~~~i~~~t~l 159 (320)
+++|+|+|+...............|+.....+.+..+..+ .++++.|.........- .+.....++...++.+.+
T Consensus 69 ~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---i~~v~~ss~~~~~~~~~~~~~~~~~~~~~~~Y~~~K~ 145 (307)
T d1eq2a_ 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE---IPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKF 145 (307)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHT---CCEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence 8999999887655555666677888999999999888875 34566554431110000 000000123345788888
Q ss_pred hHHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 160 DHNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 160 d~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
....+...+++..+.+...++...|+|..
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~r~~~vyGp~ 174 (307)
T d1eq2a_ 146 LFDEYVRQILPEANSQIVGFRYFNVYGPR 174 (307)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSS
T ss_pred hhhhhccccccccccccccccceeEeecc
Confidence 88888888899999998888999889953
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.60 E-value=2.2e-07 Score=74.59 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=60.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.+|+.++..|.+.|+ +|..+|+++ +.++ .+.+.. . .+ .. .+..++++++|+|
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~-------~V~~~d~~~--~~~~-~a~~~~--~----~~-~~-~~~~~~~~~~DiI 61 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGH-------YLIGVSRQQ--STCE-KAVERQ--L----VD-EA-GQDLSLLQTAKII 61 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHH-HHHHTT--S----CS-EE-ESCGGGGTTCSEE
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC-------EEEEEECCc--hHHH-HHHHhh--c----cc-ee-eeecccccccccc
Confidence 7999999 69999999999999997 899999863 2222 111111 0 01 11 2345789999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
|++. | ...+.++++.+..+-+++.+++..++
T Consensus 62 ilav--p--------------~~~~~~vl~~l~~~l~~~~iv~~~~s 92 (165)
T d2f1ka2 62 FLCT--P--------------IQLILPTLEKLIPHLSPTAIVTDVAS 92 (165)
T ss_dssp EECS--C--------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred cccC--c--------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence 9864 2 12345666777776546665555543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.58 E-value=4.1e-08 Score=82.01 Aligned_cols=107 Identities=21% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccc--hhHHHHHHHhcccCCCCcceEEeCChh-hhcCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAE--ALNGVKMELVDAAFPLLKGVVATTDAV-EACTG 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~--~~~~~~~dl~~~~~~~~~~v~~~~~~~-~al~~ 81 (320)
|+||+|+||+||+|++++..|+++++.. +|....+++..+ ++.....|+. +.. ....+
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~-----~v~~~~r~~~~~~~~~~~~~~d~~--------------~~~~~~~~~ 62 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLA-----KVIAPARKALAEHPRLDNPVGPLA--------------ELLPQLDGS 62 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCC-----EEECCBSSCCCCCTTEECCBSCHH--------------HHGGGCCSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeE-----EEEEEeCCchhhcccccccccchh--------------hhhhccccc
Confidence 6799999999999999999999988742 565555432111 0100000110 112 22346
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+|.||+++|..........++...|.....++++.+++.. . -+++.+|.
T Consensus 63 ~d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-v-~~~i~~Ss 111 (212)
T d2a35a1 63 IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMG-A-RHYLVVSA 111 (212)
T ss_dssp CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTT-C-CEEEEECC
T ss_pred hheeeeeeeeeccccccccccccchhhhhhhccccccccc-c-cccccccc
Confidence 8999999887543334456788899999999999998865 2 34565653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.55 E-value=5.3e-07 Score=73.14 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=66.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc-ccCCC----CcceEEeCChhhhc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD-AAFPL----LKGVVATTDAVEAC 79 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~-~~~~~----~~~v~~~~~~~~al 79 (320)
.+||+|+| +|.+|+.++..|.++|+ +|.++|+++ ++++.....-.. ...+. ......+++..+++
T Consensus 1 sk~iaIiG-aG~~G~~~A~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 70 (184)
T d1bg6a2 1 SKTYAVLG-LGNGGHAFAAYLALKGQ-------SVLAWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV 70 (184)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence 36999999 59999999999999998 899999963 333322111000 01111 13345567888999
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 80 TGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 80 ~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+++|+||++.. . ....+++++++.+-.++..++...|
T Consensus 71 ~~aD~iii~v~--~--------------~~~~~~~~~i~~~l~~~~~iv~~~g 107 (184)
T d1bg6a2 71 KDADVILIVVP--A--------------IHHASIAANIASYISEGQLIILNPG 107 (184)
T ss_dssp TTCSEEEECSC--G--------------GGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred cCCCEEEEEEc--h--------------hHHHHHHHHhhhccCCCCEEEEeCC
Confidence 99999999752 1 1235677777877656665544433
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.53 E-value=1.3e-07 Score=77.32 Aligned_cols=101 Identities=10% Similarity=0.049 Sum_probs=65.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChhhhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAVEACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~al~~a 82 (320)
|||+|+| +|.+|+++|..|.++|+ +|.++.+..+++..+.....-.+.... ....+..++++.++++++
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~-------~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a 72 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGN-------EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA 72 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCC-------EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc
Confidence 8999999 59999999999999887 899998754322222111110111111 123466678889999999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s 131 (320)
|+||++. |. ..++++++.+..+- ++..+++.+
T Consensus 73 d~Ii~av--ps--------------~~~~~~~~~l~~~l-~~~~ii~~t 104 (180)
T d1txga2 73 EVVLLGV--ST--------------DGVLPVMSRILPYL-KDQYIVLIS 104 (180)
T ss_dssp SEEEECS--CG--------------GGHHHHHHHHTTTC-CSCEEEECC
T ss_pred chhhccc--ch--------------hhhHHHHHhhcccc-ccceecccc
Confidence 9999974 21 23466777777776 444444444
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.52 E-value=4.3e-08 Score=84.80 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=63.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC--CC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT--GV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~--~a 82 (320)
.|||+||||+||+|++|+..|..+|+ +|+.+|+++ .|+.+.. +..+.++ +.
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g~-------~Vi~~~r~~---------~D~~d~~-----------~~~~~l~~~~~ 53 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKNV-------EVIPTDVQD---------LDITNVL-----------AVNKFFNEKKP 53 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSE-------EEEEECTTT---------CCTTCHH-----------HHHHHHHHHCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEeechh---------ccCCCHH-----------HHHHHHHHcCC
Confidence 38999999999999999999999987 899999753 2343332 2344454 57
Q ss_pred cEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHhhhc
Q 020875 83 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEQHA 121 (320)
Q Consensus 83 DvVi~~ag~~~~~--~~~r~~~~~~n~~~~~~i~~~i~~~~ 121 (320)
|+|||+|+..... ..........|......+.+......
T Consensus 54 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 94 (281)
T d1vl0a_ 54 NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG 94 (281)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred CEEEeeccccccccccccchhhccccccccccccccccccc
Confidence 9999998764311 12234456677777777777777664
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.48 E-value=2.4e-07 Score=76.36 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=55.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC------CCCcceEEeCChhhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF------PLLKGVVATTDAVEA 78 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~------~~~~~v~~~~~~~~a 78 (320)
|.||+|+| +|..|++++..|.+.|+ +|.|+++++ +.++... -.+... .+..++.+++++.++
T Consensus 7 m~KI~ViG-aG~wGtAlA~~La~~g~-------~V~l~~r~~--~~~~~i~--~~~~n~~yl~~~~l~~~i~~t~~l~~a 74 (189)
T d1n1ea2 7 LNKAVVFG-SGAFGTALAMVLSKKCR-------EVCVWHMNE--EEVRLVN--EKRENVLFLKGVQLASNITFTSDVEKA 74 (189)
T ss_dssp EEEEEEEC-CSHHHHHHHHHHHTTEE-------EEEEECSCH--HHHHHHH--HHTBCTTTSTTCBCCTTEEEESCHHHH
T ss_pred eceEEEEC-CCHHHHHHHHHHHHcCC-------eEEEEEecH--HHHHHHh--hcccccccccccccccccccchhhhhc
Confidence 45899999 59999999999999887 899999863 3332211 112211 234678999999999
Q ss_pred cCCCcEEEEeC
Q 020875 79 CTGVNIAVMVG 89 (320)
Q Consensus 79 l~~aDvVi~~a 89 (320)
++++|+||++.
T Consensus 75 ~~~ad~iiiav 85 (189)
T d1n1ea2 75 YNGAEIILFVI 85 (189)
T ss_dssp HTTCSCEEECS
T ss_pred cCCCCEEEEcC
Confidence 99999999974
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.45 E-value=1.8e-07 Score=76.94 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHH---HHH-HHhccc--CC--------CCcce
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNG---VKM-ELVDAA--FP--------LLKGV 69 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~---~~~-dl~~~~--~~--------~~~~v 69 (320)
+-.||+|+| +|.+|+.++..++..|+ +|+++|+++ +.++. ... .+.+.. .. ....+
T Consensus 3 ~I~~vaViG-aG~mG~~iA~~~a~~G~-------~V~l~D~~~--~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i 72 (186)
T d1wdka3 3 DVKQAAVLG-AGIMGGGIAYQSASKGT-------PILMKDINE--HGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGI 72 (186)
T ss_dssp CCSSEEEEC-CHHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHE
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHhhhhhhhhhhHHhhhcccccchhhhhhhhcee
Confidence 346899999 59999999999999997 899999974 22221 111 111110 00 12346
Q ss_pred EEeCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhH
Q 020875 70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 70 ~~~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~ 138 (320)
..+++ .+++.+||+||.+.. +|.+.-+++...+.+++++++ |++||......
T Consensus 73 ~~~~~-~~~~~~adlViEav~--------------E~l~~K~~lf~~l~~~~~~~~--IiaSnTS~l~i 124 (186)
T d1wdka3 73 RPTLS-YGDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDA--ILASNTSTISI 124 (186)
T ss_dssp EEESS-STTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTC--EEEECCSSSCH
T ss_pred ecccc-cccccccceeeeeec--------------chHHHHHHHHHHHHhhcCCCe--eEEeccccccH
Confidence 66655 467999999999642 235667899999999996665 67888665433
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=9.8e-07 Score=69.40 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=59.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
.||+|+||+|+||+-++..|++...+. ..+++++..+.. .+......... .........++++++|++
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p---~~~l~~~~ss~s----~g~~~~~~~~~-----~~~~~~~~~~~~~~~Div 69 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFD---AIRPVFFSTSQL----GQAAPSFGGTT-----GTLQDAFDLEALKALDII 69 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGG---GSEEEEEESSST----TSBCCGGGTCC-----CBCEETTCHHHHHTCSEE
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCC---eeEEEEeecccc----ccccccccCCc-----eeeecccchhhhhcCcEE
Confidence 499999999999999998777653322 247887775432 11111111110 111111234578999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
|++++ ....+++++.+.+.+ .+ .++++|..+
T Consensus 70 F~a~~----------------~~~s~~~~~~~~~~g-~~--~~VID~Ss~ 100 (146)
T d1t4ba1 70 VTCQG----------------GDYTNEIYPKLRESG-WQ--GYWIDAASS 100 (146)
T ss_dssp EECSC----------------HHHHHHHHHHHHHTT-CC--CEEEECSST
T ss_pred EEecC----------------chHHHHhhHHHHhcC-CC--eecccCCcc
Confidence 99874 134567777777765 33 456666653
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=98.34 E-value=5.1e-07 Score=78.64 Aligned_cols=159 Identities=13% Similarity=0.078 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhH-HH-HHHHhcccCC-CCcceEEeCChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALN-GV-KMELVDAAFP-LLKGVVATTDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~-~~-~~dl~~~~~~-~~~~v~~~~~~~~al~ 80 (320)
+++||+||||+|++|++++..|+++|+ +|+.++++....... .. ...+.+.... ...++.......++++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~-------~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~ 74 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH-------PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK 74 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc
Confidence 567999999999999999999999987 788888764321111 11 1111111111 1123333345677889
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhh
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld 160 (320)
+++.++++++.... ..|......++..+.+.. ..++++.|... .. ........-...+...
T Consensus 75 ~~~~~~~~~~~~~~---------~~~~~~~~~~l~~a~~~~--~~~~v~~Ss~g-~~-------~~~~~~~~~~~~~~~~ 135 (312)
T d1qyda_ 75 QVDVVISALAGGVL---------SHHILEQLKLVEAIKEAG--NIKRFLPSEFG-MD-------PDIMEHALQPGSITFI 135 (312)
T ss_dssp TCSEEEECCCCSSS---------STTTTTHHHHHHHHHHSC--CCSEEECSCCS-SC-------TTSCCCCCSSTTHHHH
T ss_pred Ccchhhhhhhhccc---------ccchhhhhHHHHHHHHhc--CCcEEEEeecc-cc-------CCCcccccchhhhhhH
Confidence 99999998764321 122233445566666654 34556655321 10 0000000111222333
Q ss_pred HHHHHHHHHHHcCCCCCCeeeeEEEcCC
Q 020875 161 HNRALGQISEKLNVQVSDVKNVIIWGNH 188 (320)
Q Consensus 161 ~~r~~~~~a~~l~v~~~~v~~~~v~G~h 188 (320)
..+......+..+++..-++...+.|..
T Consensus 136 ~~~~~~~~~~~~~~~~~i~r~~~~~g~~ 163 (312)
T d1qyda_ 136 DKRKVRRAIEAASIPYTYVSSNMFAGYF 163 (312)
T ss_dssp HHHHHHHHHHHTTCCBCEEECCEEHHHH
T ss_pred HHHHHHHhhcccccceEEeccceeecCC
Confidence 4444445567778887777776666643
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=4.1e-07 Score=72.62 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=66.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| +|.+|+.++..|.+.|+ +|.++++++. ..... ........ ........+..+++.++|+|
T Consensus 1 MkI~IiG-aG~iG~~~a~~L~~~G~-------~V~~~~r~~~--~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~D~i 67 (167)
T d1ks9a2 1 MKITVLG-CGALGQLWLTALCKQGH-------EVQGWLRVPQ--PYCSV--NLVETDGS-IFNESLTANDPDFLATSDLL 67 (167)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCC--SEEEE--EEECTTSC-EEEEEEEESCHHHHHTCSEE
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-------ceEEEEcCHH--Hhhhh--ccccCCcc-ccccccccchhhhhcccceE
Confidence 8999999 59999999999999998 8999998752 22111 00111111 11222334556788999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
|++.... .+.+.++.+..+-.++..++.+.|-.+.
T Consensus 68 ii~vka~----------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~ 102 (167)
T d1ks9a2 68 LVTLKAW----------------QVSDAVKSLASTLPVTTPILLIHNGMGT 102 (167)
T ss_dssp EECSCGG----------------GHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred EEeeccc----------------chHHHHHhhccccCcccEEeeccCcccH
Confidence 9986321 1345566666655467778888886643
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=2.2e-06 Score=73.19 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=96.1
Q ss_pred CCC--CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC---Ch
Q 020875 1 MAK--EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT---DA 75 (320)
Q Consensus 1 m~~--~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~---~~ 75 (320)
|+. +.++++||||++.+|.+++..|++.|. +|++.|+++ ++++....++.... ....++.... ..
T Consensus 1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~l~~~~~~~~~~~-~~~~Dv~d~~~v~~~ 70 (244)
T d1pr9a_ 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGA-------RVVAVSRTQ--ADLDSLVRECPGIE-PVCVDLGDWEATERA 70 (244)
T ss_dssp CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCH--HHHHHHHHhcCCCe-EEEEeCCCHHHHHHH
Confidence 554 457999999999999999999999997 899999874 44544433332211 1111221111 23
Q ss_pred hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 76 VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.+.+...|++|+.||...... .+ .+..+..|+.. ++.+++.+.+.. ..+.+|++++-...
T Consensus 71 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~--------- 140 (244)
T d1pr9a_ 71 LGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARG-VPGAIVNVSSQCSQ--------- 140 (244)
T ss_dssp HTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGT---------
T ss_pred HHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhC-CcceEeeccccccc---------
Confidence 334567899999998754221 12 33456666654 444555444333 45778888764321
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++-.-..+-+.+|+.++ +..||.
T Consensus 141 ~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrv 174 (244)
T d1pr9a_ 141 RAVTNHSVYCSTKGALDMLTKVMALELG--PHKIRV 174 (244)
T ss_dssp SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHhC--CCcEEE
Confidence 1233222466666666677778888876 566774
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=98.26 E-value=4.3e-07 Score=78.54 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhc---ccCC-CCcceEEeCChhhhc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD---AAFP-LLKGVVATTDAVEAC 79 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~---~~~~-~~~~v~~~~~~~~al 79 (320)
.++||+||||+|++|++++..|++.|+ +|+.++++............+.+ .... ...++.......+++
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 74 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGH-------PTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAV 74 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC-------CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhh
Confidence 457999999999999999999999987 79999886432111111111111 1100 112222223456778
Q ss_pred CCCcEEEEeCCC
Q 020875 80 TGVNIAVMVGGF 91 (320)
Q Consensus 80 ~~aDvVi~~ag~ 91 (320)
+++|.|++.++.
T Consensus 75 ~~~~~vi~~~~~ 86 (307)
T d1qyca_ 75 KNVDVVISTVGS 86 (307)
T ss_dssp HTCSEEEECCCG
T ss_pred hhceeeeecccc
Confidence 899999998754
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=98.24 E-value=1.5e-06 Score=74.85 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=97.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCCh-----
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA----- 75 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~----- 75 (320)
|+=+.+++.||||++.+|.+++..|++.|. .|++.|+++ ++++....++......+..+++...+.
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~ 71 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVREGA-------RVAIADINL--EAARATAAEIGPAACAIALDVTDQASIDRCVA 71 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHTTE-------EEEEEESCH--HHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCceEEEEeeCCCHHHHHHHHH
Confidence 666667899999999999999999999997 899999874 555555555532211111222222221
Q ss_pred --hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 76 --VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 76 --~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+.+...|++|+.||...... .+ .+..+..|+... +.+++.+.+.. ..+.+|++|+....
T Consensus 72 ~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~-~~g~Iv~isS~~~~------- 143 (256)
T d1k2wa_ 72 ELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGG-RGGKIINMASQAGR------- 143 (256)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGT-------
T ss_pred HHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhc-cCCccccccchhhc-------
Confidence 222457899999999754211 12 344567776544 34455544443 45778888864421
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++---..|-+.+|..++ +..|+.
T Consensus 144 --~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV 177 (256)
T d1k2wa_ 144 --RGEALVGVYCATKAAVISLTQSAGLNLI--RHGINV 177 (256)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --cccccccchhhhhhHHHHHHHHHHHHhc--ccCeEE
Confidence 1222222456665556677777888876 456663
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.17 E-value=1.4e-05 Score=65.56 Aligned_cols=116 Identities=12% Similarity=0.201 Sum_probs=68.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC------------CCcceEEeC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP------------LLKGVVATT 73 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~------------~~~~v~~~~ 73 (320)
|||+|+| .|+||.++|..+. .|+ +|+.+|.++ ++++ .+.....+ ....+..++
T Consensus 1 MkI~ViG-lG~vGl~~a~~~a-~g~-------~V~g~Din~--~~v~----~l~~g~~p~~e~~l~~~~~~~~~~~~~~~ 65 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLLS-LQN-------EVTIVDILP--SKVD----KINNGLSPIQDEYIEYYLKSKQLSIKATL 65 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHHT-TTS-------EEEEECSCH--HHHH----HHHTTCCSSCCHHHHHHHHHSCCCEEEES
T ss_pred CEEEEEC-CChhHHHHHHHHH-CCC-------cEEEEECCH--HHHH----HHhhcccccchhhHHHHhhhhhhhhhccc
Confidence 7999999 7999999987654 576 899999974 3332 22222111 123566667
Q ss_pred ChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc-CcchhhHHHHH
Q 020875 74 DAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPANTNALILK 142 (320)
Q Consensus 74 ~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s-nP~~~~~~~~~ 142 (320)
+...+..++|+++++...+.....+.. ....+....+.+.... +...+++-| =|.+..-.+..
T Consensus 66 ~~~~~~~~~~ii~v~vpt~~~~~~~~~-----~~~~v~~~~~~~~~~~-~~~~iii~Stv~pgt~~~~~~ 129 (196)
T d1dlja2 66 DSKAAYKEAELVIIATPTNYNSRINYF-----DTQHVETVIKEVLSVN-SHATLIIKSTIPIGFITEMRQ 129 (196)
T ss_dssp CHHHHHHHCSEEEECCCCCEETTTTEE-----CCHHHHHHHHHHHHHC-SSCEEEECSCCCTTHHHHHHH
T ss_pred hhhhhhhccccccccCCccccccCCCc-----ceeEEeehhhhhhhcc-cceeEEeeeecCceeeeeeee
Confidence 778888999999998776643221111 1123344455555554 444444433 34454444433
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=2e-05 Score=67.59 Aligned_cols=161 Identities=16% Similarity=0.221 Sum_probs=97.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-----CCcceEEeCC-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTD----- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-----~~~~v~~~~~----- 74 (320)
.+.++||||++.||.+++..|+++|. .|++.|+++ ++++....++.....+ +..+++...+
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~-------~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v 80 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGL-------KVVGCARTV--GNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMF 80 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHH
Confidence 35689999999999999999999997 899999874 5565555555543211 1112211111
Q ss_pred --hhhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 75 --AVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 75 --~~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
..+.+...|++|+.||...... .+ .+..+..|+. .++.+++.+++....++++|+++.....
T Consensus 81 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~------ 154 (257)
T d1xg5a_ 81 SAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH------ 154 (257)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGT------
T ss_pred HHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhc------
Confidence 2333567899999998753211 12 2334555643 4455666666654345788888765431
Q ss_pred HHCCCCCCCc--EEEeehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 143 EFAPSIPAKN--ITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 143 ~~~~~~~~~~--i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
...|... .|+.++-.-..|-+.+|..|.-.+..|+.-.
T Consensus 155 ---~~~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~ 194 (257)
T d1xg5a_ 155 ---RVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATC 194 (257)
T ss_dssp ---SCCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred ---CCCCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEE
Confidence 1222211 3566555556677778887755556777443
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.13 E-value=4e-06 Score=66.84 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=48.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| .|.+|++++..|+..|+ +|..+|+++ ++++ ++... ......+..++++++|+|
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~-------~V~~~d~~~--~~~~----~~~~~------~~~~~~~~~e~~~~~d~i 60 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGY-------SLVVSDRNP--EAIA----DVIAA------GAETASTAKAIAEQCDVI 60 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH--HHHH----HHHHT------TCEECSSHHHHHHHCSEE
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCC-------eEEEEeCCc--chhH----HHHHh------hhhhcccHHHHHhCCCeE
Confidence 7999999 79999999999999997 899999873 3332 22221 123345678889999999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|.+.
T Consensus 61 i~~v 64 (161)
T d1vpda2 61 ITML 64 (161)
T ss_dssp EECC
T ss_pred EEEc
Confidence 9975
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.12 E-value=5.2e-06 Score=70.85 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=95.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC-------hhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~~ 77 (320)
.+.++||||++.+|.+++..|++.|. +|++.|+++ ++++....++.+.......+++...+ ..+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGA-------KVVFGDILD--EEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVT 76 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHH
Confidence 35788999999999999999999997 899999974 55555555554322111122222111 223
Q ss_pred hcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 78 ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
.+...|++|+.||..... ..+ ..+.+..|+.... ...+.+.+. +.+.+|++|+.... .+
T Consensus 77 ~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~isS~~~~---------~~ 145 (244)
T d1nffa_ 77 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA--GRGSIINISSIEGL---------AG 145 (244)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGT---------SC
T ss_pred HhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc--CcceEEeccccccc---------cc
Confidence 345789999999875321 122 3345666765444 445555554 35788888875421 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|..-.|+.++---..|-+.+|+.+. +..|+.
T Consensus 146 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV 177 (244)
T d1nffa_ 146 TVACHGYTATKFAVRGLTKSTALELG--PSGIRV 177 (244)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHHhc--ccCEEE
Confidence 23222466666666677777888765 456663
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=3.9e-06 Score=71.60 Aligned_cols=155 Identities=16% Similarity=0.144 Sum_probs=94.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC-------hhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~~ 77 (320)
.+.+.||||++.+|.+++..|++.|. .|++.|+++ ++++....++......+..+++...+ ..+
T Consensus 4 gK~alITGas~GIG~a~a~~l~~~G~-------~Vv~~~r~~--~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (243)
T d1q7ba_ 4 GKIALVTGASRGIGRAIAETLAARGA-------KVIGTATSE--NGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRA 74 (243)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhc
Confidence 35788999999999999999999997 899999874 45554444443211111112221111 223
Q ss_pred hcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 78 ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
.+...|++|+.||...... .+ ....+..|+... +.+++.+.+. ..+++|++|+.... . +
T Consensus 75 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~II~isS~~~~-------~--~ 143 (243)
T d1q7ba_ 75 EFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK--RHGRIITIGSVVGT-------M--G 143 (243)
T ss_dssp HTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCHHHH-------H--C
T ss_pred ccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc--CCCEeeeecchhhc-------C--C
Confidence 3457999999998754321 12 334566676544 4455555554 35788888864321 1 2
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|..-.|+.++-.-..|-+.+|..++ +..|+.
T Consensus 144 ~~~~~~Y~asKaal~~lt~~lA~ela--~~gIrV 175 (243)
T d1q7ba_ 144 NGGQANYAAAKAGLIGFSKSLAREVA--SRGITV 175 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 23222467776666778788888876 456763
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.06 E-value=2.6e-06 Score=69.96 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC-CC-CcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF-PL-LKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~-~~-~~~v~~~~~~~~al~~ 81 (320)
+.++|+||||+|.+|..++..|++.|. +|++++++. ++++.....+..... .. ..++....+..+++.+
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGA-------EVVLCGRKL--DKAQAAADSVNKRFKVNVTAAETADDASRAEAVKG 92 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhcc-------chhhcccch--HHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcC
Confidence 457999999999999999999999996 899999974 455444433332211 11 1222333456778899
Q ss_pred CcEEEEeCCCC
Q 020875 82 VNIAVMVGGFP 92 (320)
Q Consensus 82 aDvVi~~ag~~ 92 (320)
+|+||++||.+
T Consensus 93 iDilin~Ag~g 103 (191)
T d1luaa1 93 AHFVFTAGAIG 103 (191)
T ss_dssp CSEEEECCCTT
T ss_pred cCeeeecCccc
Confidence 99999999864
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.05 E-value=1.6e-06 Score=73.69 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=92.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceE-EeCChhhhcC--C
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATTDAVEACT--G 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~-~~~~~~~al~--~ 81 (320)
.++|.||||+|.+|.+++..|++.|. .|.++|++++.+.......++.+.. ..... ......+.+. .
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~-------~V~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 71 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNW-------WVASIDVVENEEASASVIVKMTDSF---TEQADQVTAEVGKLLGDQK 71 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESSCCTTSSEEEECCCCSCH---HHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEeCCccccccccceeecccCc---HHHHHHHHHHHHHHhCCCC
Confidence 46999999999999999999999997 8999998653221111000000000 00000 0001122222 4
Q ss_pred CcEEEEeCCCCC--CC-CCC----HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEE
Q 020875 82 VNIAVMVGGFPR--KE-GME----RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT 154 (320)
Q Consensus 82 aDvVi~~ag~~~--~~-~~~----r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~ 154 (320)
.|++|+.||... .+ ... .+..+..|+.....+.+.+.++-.+.+++|++|+-... .+.|..-.|
T Consensus 72 iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~---------~~~~~~~~Y 142 (236)
T d1dhra_ 72 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL---------DGTPGMIGY 142 (236)
T ss_dssp EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCCTTBHHH
T ss_pred ceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc---------CCccCCccc
Confidence 799999998522 11 111 23356777777666666666554345777777754321 123322246
Q ss_pred EeehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 155 CLTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 155 ~~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
+.++---..|-+.+|..++-.+..|+...
T Consensus 143 ~asKaal~~lt~~la~El~~~~~gI~vn~ 171 (236)
T d1dhra_ 143 GMAKGAVHQLCQSLAGKNSGMPSGAAAIA 171 (236)
T ss_dssp HHHHHHHHHHHHHHTSTTSSCCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 66666666777778887775567787443
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=98.05 E-value=7.8e-06 Score=70.94 Aligned_cols=157 Identities=19% Similarity=0.146 Sum_probs=93.8
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC------
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD------ 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~------ 74 (320)
|+-+.+.++||||++.+|.+++..|++.|. .|++.|+++ ++++....++.........+++...+
T Consensus 1 M~L~gK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 71 (276)
T d1bdba_ 1 MKLKGEAVLITGGASGLGRALVDRFVAEGA-------KVAVLDKSA--ERLAELETDHGDNVLGIVGDVRSLEDQKQAAS 71 (276)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHcCCCeeEEecccccHHHHHHHHH
Confidence 776778999999999999999999999997 899999874 55554444443221111112221111
Q ss_pred -hhhhcCCCcEEEEeCCCCCCC-------CCC----HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhH
Q 020875 75 -AVEACTGVNIAVMVGGFPRKE-------GME----RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 75 -~~~al~~aDvVi~~ag~~~~~-------~~~----r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~ 138 (320)
..+.+...|++|+.||..... .+. .+..+..|+.. ++..++.+++.. +.+|++++....
T Consensus 72 ~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~---g~iI~i~S~~~~-- 146 (276)
T d1bdba_ 72 RCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR---GNVIFTISNAGF-- 146 (276)
T ss_dssp HHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGT--
T ss_pred HHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC---CCceeeeechhc--
Confidence 223355789999999864211 111 23456666544 445555565542 455666544321
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++-.-..|-+.+|..++ +. |+.
T Consensus 147 -------~~~~~~~~Y~asKaal~~ltr~lA~ela--~~-IrV 179 (276)
T d1bdba_ 147 -------YPNGGGPLYTAAKHAIVGLVRELAFELA--PY-VRV 179 (276)
T ss_dssp -------STTSSCHHHHHHHHHHHHHHHHHHHHHT--TT-CEE
T ss_pred -------cCCCCCchHHHHHHHHHHHHHHHHHHhh--cc-eEE
Confidence 1222222466666666677788899886 33 663
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.03 E-value=9.1e-06 Score=69.16 Aligned_cols=159 Identities=14% Similarity=0.074 Sum_probs=94.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC---hhh
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD---AVE 77 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~---~~~ 77 (320)
|+=+-++++||||++.+|.+++..|++.|. .|++.|+++ ++++....++.... ....++....+ ..+
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~~-~~~~Dv~~~~~v~~~~~ 70 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGA-------KVVAVTRTN--SDLVSLAKECPGIE-PVCVDLGDWDATEKALG 70 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHSTTCE-EEECCTTCHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHhcCCCe-EEEEeCCCHHHHHHHHH
Confidence 555567999999999999999999999997 899999874 44443333332211 11112211111 223
Q ss_pred hcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 78 ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
.+...|++|+.||...... .+ .+..+..|+.....+ .+.+.+.. ..+.+|++++.... .+
T Consensus 71 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~-~~g~ii~isS~~~~---------~~ 140 (242)
T d1cyda_ 71 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRG-VPGSIVNVSSMVAH---------VT 140 (242)
T ss_dssp TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGT---------SC
T ss_pred HcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhc-ccCcccccchhhcc---------cc
Confidence 3457899999999754211 12 334566676655444 44443333 34678887764321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|..-.|+.++---..+-+.+|..++ +..|+.
T Consensus 141 ~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrv 172 (242)
T d1cyda_ 141 FPNLITYSSTKGAMTMLTKAMAMELG--PHKIRV 172 (242)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCccccccchHHHHHHHHHHHHHHhC--ccCeec
Confidence 22222456666656677777888765 456764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=98.03 E-value=6.7e-06 Score=70.55 Aligned_cols=155 Identities=16% Similarity=0.091 Sum_probs=93.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC-------hhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~~ 77 (320)
.++++||||++-+|.+++..|++.|. .|++.|+++ ++++....++.........+++...+ ..+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGA-------RVVLADVLD--EEGAATARELGDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHH
Confidence 46899999999999999999999997 899999874 44544444443221111112221111 223
Q ss_pred hcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 78 ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
.+...|++|+.||...... .+ ..+.+..|+... +.+++.+++. ..+.+|++|+-... .+
T Consensus 76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~--~~G~II~isS~~~~---------~~ 144 (254)
T d1hdca_ 76 EFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA--GGGSIVNISSAAGL---------MG 144 (254)
T ss_dssp HHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGT---------SC
T ss_pred HcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc--CCCeecccccchhc---------cc
Confidence 3457899999998754221 12 334566776544 4445555554 35788888865421 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|..-.|+.++---..|-+.+|..+. +..|+.
T Consensus 145 ~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIrV 176 (254)
T d1hdca_ 145 LALTSSYGASKWGVRGLSKLAAVELG--TDRIRV 176 (254)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhC--CCceEE
Confidence 33222466666666677777887765 456663
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=98.02 E-value=5.5e-06 Score=70.58 Aligned_cols=156 Identities=18% Similarity=0.132 Sum_probs=92.3
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC------
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD------ 74 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~------ 74 (320)
|+-+.+++.||||++.+|.+++..|++.|. .|++.|+++ ++++....++... ....++....+
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~l~~~~~~~~~~--~~~~Dv~~~~~v~~~~~ 69 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGA-------RLVACDIEE--GPLREAAEAVGAH--PVVMDVADPASVERGFA 69 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTTTCE--EEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHcCCe--EEEEecCCHHHHHHHHH
Confidence 777778999999999999999999999997 899999874 4444332222111 01112211111
Q ss_pred -hhhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHH----HHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 75 -AVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQA----SALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 75 -~~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~----~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
..+.+...|++|+.||...... .+ ....+..|+.....+. +.+++. ...++++.|... .
T Consensus 70 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~~~i~~~ss~~-~------- 139 (242)
T d1ulsa_ 70 EALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK--NPGSIVLTASRV-Y------- 139 (242)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCEEEEEECCGG-G-------
T ss_pred HHHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc--ccceeeeecccc-c-------
Confidence 2233457899999999754321 22 3345667766555444 444443 235555555321 1
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++---..|-+.+|..+. +..||.
T Consensus 140 --~~~~~~~~Y~asKaal~~ltk~lA~ela--~~gIrV 173 (242)
T d1ulsa_ 140 --LGNLGQANYAASMAGVVGLTRTLALELG--RWGIRV 173 (242)
T ss_dssp --GCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --cCCCCCcchHHHHHHHHHHHHHHHHHHh--hhCcEE
Confidence 1233323466666656667777888775 456763
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.02 E-value=2.2e-06 Score=72.65 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=90.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceE-EeCChhhhc--CCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVV-ATTDAVEAC--TGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~-~~~~~~~al--~~a 82 (320)
.||+||||+|.+|.+++..|++.|. +|+++|+++++....... ............ ......+.+ ...
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~-------~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~i 72 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGY-------TVLNIDLSANDQADSNIL---VDGNKNWTEQEQSILEQTASSLQGSQV 72 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSCCTTSSEEEE---CCTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCchhcccccce---eccccCchhHHHHHHHHHHHHhcCCCe
Confidence 4899999999999999999999997 899999975321100000 000000000000 000112222 347
Q ss_pred cEEEEeCCCCCC--C-CCC----HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEE
Q 020875 83 NIAVMVGGFPRK--E-GME----RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 155 (320)
Q Consensus 83 DvVi~~ag~~~~--~-~~~----r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~ 155 (320)
|++|+.||.... + .++ .+..+..|+.....+++....+-.+.+.++++|..... .+.|..-.|+
T Consensus 73 D~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~---------~~~~~~~~Y~ 143 (235)
T d1ooea_ 73 DGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM---------GPTPSMIGYG 143 (235)
T ss_dssp EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG---------SCCTTBHHHH
T ss_pred eEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhc---------CCcccccchH
Confidence 999999986321 1 122 22346777776666666655553244677777754321 2233222466
Q ss_pred eehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 156 LTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 156 ~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
.++-....|-+.+|..++-.+..|+...
T Consensus 144 asKaal~~l~~~la~e~~~~~~~i~v~~ 171 (235)
T d1ooea_ 144 MAKAAVHHLTSSLAAKDSGLPDNSAVLT 171 (235)
T ss_dssp HHHHHHHHHHHHHHSTTSSCCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEE
Confidence 6666667788888888775566777443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=98.00 E-value=2.7e-05 Score=61.01 Aligned_cols=39 Identities=13% Similarity=0.304 Sum_probs=35.0
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
|+.+++||+||||.|.+|+.++..|.+.|+ +|.++|++.
T Consensus 5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~-------~V~~~d~~~ 43 (152)
T d2pv7a2 5 INSDIHKIVIVGGYGKLGGLFARYLRASGY-------PISILDRED 43 (152)
T ss_dssp SCTTCCCEEEETTTSHHHHHHHHHHHTTTC-------CEEEECTTC
T ss_pred cCCCCCeEEEEcCCCHHHHHHHHHHHHcCC-------CcEeccccc
Confidence 666788999999779999999999999998 899999864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.98 E-value=9.6e-05 Score=58.73 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=58.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
+||+|+| +|.+|+.++..|.+.++. .+|..+|+++ +.++ .+.+..- .+...+........++|+|
T Consensus 2 k~I~IIG-~G~mG~sla~~L~~~g~~-----~~I~~~D~~~--~~~~-~a~~~~~------~~~~~~~~~~~~~~~~dlI 66 (171)
T d2g5ca2 2 QNVLIVG-VGFMGGSFAKSLRRSGFK-----GKIYGYDINP--ESIS-KAVDLGI------IDEGTTSIAKVEDFSPDFV 66 (171)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCC-----SEEEEECSCH--HHHH-HHHHTTS------CSEEESCGGGGGGTCCSEE
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCC-----eEEEEEECCh--HHHH-HHHHhhc------chhhhhhhhhhhccccccc
Confidence 4799999 699999999999998863 2899999863 2221 1222211 1111222233445689999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
|++.- ...+.++++.+..+.+++.+++-+++
T Consensus 67 ila~p----------------~~~~~~vl~~l~~~~~~~~ii~d~~s 97 (171)
T d2g5ca2 67 MLSSP----------------VRTFREIAKKLSYILSEDATVTDQGS 97 (171)
T ss_dssp EECSC----------------HHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred cccCC----------------chhhhhhhhhhhcccccccccccccc
Confidence 99752 12345556666666546666655554
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.98 E-value=2.4e-05 Score=66.86 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=93.8
Q ss_pred CEE-EEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCC-------
Q 020875 6 VRV-LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD------- 74 (320)
Q Consensus 6 ~kI-~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~------- 74 (320)
+|| +||||++.+|.+++..|++.|. .|++.|+++ ++++....++.+.... +..+++...+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~ 71 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGF-------AVAIADYND--ATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQ 71 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 366 7889999999999999999997 899999974 5565555555543211 1112211111
Q ss_pred hhhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 75 AVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
..+.+-..|++|+.||...... .+ .+..+..|+.....+ ++.+.+.+ ...+++++|+....
T Consensus 72 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~~g~Iv~isS~~~~-------- 142 (255)
T d1gega_ 72 ARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEG-HGGKIINACSQAGH-------- 142 (255)
T ss_dssp HHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SCEEEEEECCGGGT--------
T ss_pred HHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhc-cccccccccchhhc--------
Confidence 2233557999999998754211 22 334566776655444 44455554 45667777754321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++---..+-+.+|..++ +..|+.
T Consensus 143 -~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV 176 (255)
T d1gega_ 143 -VGNPELAVYSSSKFAVRGLTQTAARDLA--PLGITV 176 (255)
T ss_dssp -SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -ccCcccccchhCHHHHHhhHHHHHHHhh--hhCcEE
Confidence 1222222456666556677777888776 556763
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=97.96 E-value=1.2e-05 Score=68.77 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=91.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC-------hhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~~ 77 (320)
.+.++||||++.+|.+++..|++.|. .|++.|+++ ++++....++.........+++...+ ..+
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~~~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 76 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGA-------KVAFSDINE--AAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHH
Confidence 35788999999999999999999997 899999864 45554455553322111122222111 223
Q ss_pred hcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 78 ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
.+...|++|+.||..... ..+ .+..+..|+.. ++..++.+++. .+.+|++|+.... .+
T Consensus 77 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~---~G~Iv~isS~~~~---------~~ 144 (253)
T d1hxha_ 77 RLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET---GGSIINMASVSSW---------LP 144 (253)
T ss_dssp HHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT---CEEEEEECCGGGT---------SC
T ss_pred HhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---CCceecccchhhh---------cC
Confidence 345789999999975421 122 33456677554 44555555432 3778888865421 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.|..-.|+.++-.-..|-+.+|..++-....|+
T Consensus 145 ~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~Ir 177 (253)
T d1hxha_ 145 IEQYAGYSASKAAVSALTRAAALSCRKQGYAIR 177 (253)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred ccccccccchhHHHHHHHHHHHHHHhhcCCCEE
Confidence 332224566655555666667766653333455
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=1.4e-05 Score=67.51 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=88.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEE-eCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA-TTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~-~~~~~~al~~a 82 (320)
+.++++||||++.+|.+++..|++.|. +|++.|+++ +.++.. .+.. ...+++. .....+.+...
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga-------~V~~~~r~~--~~l~~~----~~~~--~~~Dv~~~~~~~~~~~g~i 67 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGA-------EVTICARNE--ELLKRS----GHRY--VVCDLRKDLDLLFEKVKEV 67 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHT----CSEE--EECCTTTCHHHHHHHSCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHhc----CCcE--EEcchHHHHHHHHHHhCCC
Confidence 346899999999999999999999997 899999873 333211 1100 0011100 11245667789
Q ss_pred cEEEEeCCCCCCCC---CC---HHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc
Q 020875 83 NIAVMVGGFPRKEG---ME---RKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN 152 (320)
Q Consensus 83 DvVi~~ag~~~~~~---~~---r~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~ 152 (320)
|++|+.||.+.... .+ .++.+..|+. .++.+++.+++.. .+.+|++++.... .+.+..-
T Consensus 68 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~--~G~ii~i~S~~~~---------~~~~~~~ 136 (234)
T d1o5ia_ 68 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIVAITSFSVI---------SPIENLY 136 (234)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------SCCTTBH
T ss_pred cEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc--ccccccccccccc---------ccccccc
Confidence 99999999764321 22 2334556655 4555566666653 4677777754311 1222222
Q ss_pred EEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 153 ITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 153 i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.|+.++-.-..|-+.+|+.++ +..|+
T Consensus 137 ~Y~asKaal~~ltk~lA~ela--~~gIr 162 (234)
T d1o5ia_ 137 TSNSARMALTGFLKTLSFEVA--PYGIT 162 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred cchhHHHHHHHHHHHHHHHhc--ccCeE
Confidence 344555445566677887765 45666
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=9.1e-06 Score=69.26 Aligned_cols=159 Identities=15% Similarity=0.127 Sum_probs=94.1
Q ss_pred CCC-CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEE---eCChh
Q 020875 1 MAK-EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVA---TTDAV 76 (320)
Q Consensus 1 m~~-~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~---~~~~~ 76 (320)
|++ +.+++.||||++.+|.+++..|+++|. +|++.|+++ ++++.......... ...++.. .....
T Consensus 1 m~~l~gK~alITGas~GIG~aia~~la~~G~-------~Vi~~~r~~--~~l~~~~~~~~~~~--~~~d~~~~~~~~~~~ 69 (245)
T d2ag5a1 1 MGRLDGKVIILTAAAQGIGQAAALAFAREGA-------KVIATDINE--SKLQELEKYPGIQT--RVLDVTKKKQIDQFA 69 (245)
T ss_dssp CCTTTTCEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHGGGGGSTTEEE--EECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHhccCCce--eeeeccccccccccc
Confidence 553 446788999999999999999999997 899999874 33332111100000 0001110 11233
Q ss_pred hhcCCCcEEEEeCCCCCCCC---CCH---HHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 77 EACTGVNIAVMVGGFPRKEG---MER---KDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~~---~~r---~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+.+...|++|+.+|...... .+. ...+..|+... +.+.+.+.+. +.+.+|++++..... .
T Consensus 70 ~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~--~~g~Ii~isS~~~~~--------~ 139 (245)
T d2ag5a1 70 NEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ--KSGNIINMSSVASSV--------K 139 (245)
T ss_dssp HHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCSBTTT--------B
T ss_pred cccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC--CCceeeeeechhhcc--------C
Confidence 44568999999999764321 222 33455565444 4445555554 457888888654211 2
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+++..-.|+.++---..+-+.+|+.++ +..|+.-
T Consensus 140 ~~~~~~~Y~~sKaal~~l~r~lA~e~~--~~gIrvN 173 (245)
T d2ag5a1 140 GVVNRCVYSTTKAAVIGLTKSVAADFI--QQGIRCN 173 (245)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhh--hhCcEEE
Confidence 233323567776666778888888877 4567643
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=97.92 E-value=8.5e-06 Score=72.60 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CC-CCcceEEe-CChhhhcC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP-LLKGVVAT-TDAVEACT 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~-~~~~v~~~-~~~~~al~ 80 (320)
++++|+||||+|++|++++..|++.|+ +|+++-++.+. .... .+.... .. ...++... ..+..++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-------~V~~l~R~~~~--~~~~--~~~~~~~v~~~~gD~~d~~~~~~~a~~ 70 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH-------HVRAQVHSLKG--LIAE--ELQAIPNVTLFQGPLLNNVPLMDTLFE 70 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC-------CEEEEESCSCS--HHHH--HHHTSTTEEEEESCCTTCHHHHHHHHT
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC-------eEEEEECCcch--hhhh--hhcccCCCEEEEeeCCCcHHHHHHHhc
Confidence 467999999999999999999999987 78777775432 2211 121110 00 01111111 11456788
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 81 GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 81 ~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
++|.+++...... ..+....+++++++.+.+. .+++++|.
T Consensus 71 ~~~~~~~~~~~~~----------~~~~~~~~~~~~aa~~agv--~~~v~~Ss 110 (350)
T d1xgka_ 71 GAHLAFINTTSQA----------GDEIAIGKDLADAAKRAGT--IQHYIYSS 110 (350)
T ss_dssp TCSEEEECCCSTT----------SCHHHHHHHHHHHHHHHSC--CSEEEEEE
T ss_pred CCceEEeeccccc----------chhhhhhhHHHHHHHHhCC--CceEEEee
Confidence 9999888643211 1244556778888887752 34555553
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=97.92 E-value=3.6e-05 Score=65.64 Aligned_cols=158 Identities=8% Similarity=0.026 Sum_probs=93.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCC-------h
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTD-------A 75 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~-------~ 75 (320)
.+.++||||++.+|.+++..|++.|. .|++.|+++ ++++....++..... .+..++....+ .
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGA-------KVMITGRHS--DVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHH
Confidence 36788999999999999999999997 899999864 455544444432110 01112211111 2
Q ss_pred hhhcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 76 VEACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.+.+-..|++|+.||..... ..+ ..+.+..|+.. ++..++.+++.. ..+++|++|+-...
T Consensus 77 ~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~-~gg~Ii~isS~~~~--------- 146 (251)
T d1zk4a1 77 EKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKG-LGASIINMSSIEGF--------- 146 (251)
T ss_dssp HHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEEECCGGGT---------
T ss_pred HHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcC-CCCceEeeecccee---------
Confidence 23345789999999875321 122 23456677655 444555566554 44677888764321
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++---..|-+.+|..+...+..|+.
T Consensus 147 ~~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrV 182 (251)
T d1zk4a1 147 VGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRV 182 (251)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred ccCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEE
Confidence 123322245666555556666677664445667773
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.92 E-value=8.1e-06 Score=64.40 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=48.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+++| +|.+|++++..|...++ ++.+++++. ++++.....+. +....+..++++++|+|
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~-------~i~v~~r~~--~~~~~l~~~~g---------~~~~~~~~~~~~~~dvI 61 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPH-------ELIISGSSL--ERSKEIAEQLA---------LPYAMSHQDLIDQVDLV 61 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSC-------EEEEECSSH--HHHHHHHHHHT---------CCBCSSHHHHHHTCSEE
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCC-------eEEEEcChH--HhHHhhccccc---------eeeechhhhhhhcccee
Confidence 7999999 79999999999988776 899999863 44433222221 22234678889999999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 62 ilav 65 (152)
T d2ahra2 62 ILGI 65 (152)
T ss_dssp EECS
T ss_pred eeec
Confidence 9875
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=7.9e-05 Score=63.62 Aligned_cols=156 Identities=16% Similarity=0.136 Sum_probs=95.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCC------
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD------ 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~------ 74 (320)
+.+.+.||||++.+|.+++..|++.|. .|++.|+++ ++++....++...... +..+++...+
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~ 80 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-------SVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALAD 80 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHH
Confidence 456889999999999999999999997 899999864 5555555555432211 1112221111
Q ss_pred -hhhhcCCCcEEEEeCCCCCCC--CCC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 75 -AVEACTGVNIAVMVGGFPRKE--GME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 75 -~~~al~~aDvVi~~ag~~~~~--~~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
..+.+...|++|+.||..... ..+ .+..+..|+.. ++.+++.+.+.. ...+|++|+-...
T Consensus 81 ~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~Ii~isS~~~~-------- 150 (255)
T d1fmca_ 81 FAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAE-------- 150 (255)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT--------
T ss_pred HHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc--ccccccccccchh--------
Confidence 123345789999999875422 122 23355666554 445566666653 4667777753321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++-.-..|-+.+|+.++ +..|+.
T Consensus 151 -~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV 184 (255)
T d1fmca_ 151 -NKNINMTSYASSKAAASHLVRNMAFDLG--EKNIRV 184 (255)
T ss_dssp -CCCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred -ccccccccchhHHHHHHHHHHHHHHHhC--ccCeEE
Confidence 1223222466666666677778888875 456763
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=97.91 E-value=6.6e-05 Score=63.54 Aligned_cols=155 Identities=18% Similarity=0.133 Sum_probs=93.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC-------hhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~~ 77 (320)
.+++.||||++.+|..++..|+++|. +|++.++++ ++++....++.........+++...+ ..+
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGA-------SLVAVDREE--RLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46889999999999999999999997 899999874 44443333332211111112211111 233
Q ss_pred hcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCC
Q 020875 78 ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAK 151 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~ 151 (320)
.+...|++|+.||...... .+ ..+.+..|+.....+.+....+......+++.|....... |..
T Consensus 76 ~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~----------~~~ 145 (241)
T d2a4ka1 76 EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA----------FGL 145 (241)
T ss_dssp HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH----------HHH
T ss_pred HhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccc----------cCc
Confidence 3457899999987653221 22 3456778888888887777776533444555554321111 111
Q ss_pred cEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 152 NITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 152 ~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..|+.++.-...|-+.+|+.++- ..|+
T Consensus 146 ~~Y~~sK~al~~lt~~lA~el~~--~gIr 172 (241)
T d2a4ka1 146 AHYAAGKLGVVGLARTLALELAR--KGVR 172 (241)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTT--TTCE
T ss_pred cccchhhHHHHHHHHHHHHHHhH--hCCE
Confidence 13555666667888889999874 4455
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.90 E-value=5.7e-05 Score=58.96 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=58.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+||+|++|+-++..|.+...+ +..++.++..+.. .+...++. ............+.++++|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~---p~~~i~~~ss~~~----~gk~~~~~-----~~~~~~~~~~~~~~~~~~Dvv 68 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDF---DLIEPVFFSTSQI----GVPAPNFG-----KDAGMLHDAFDIESLKQLDAV 68 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGG---GGSEEEEEESSCC----SSBCCCSS-----SCCCBCEETTCHHHHTTCSEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCC---CceEEEEeccccc----cccccccC-----CcceeeecccchhhhccccEE
Confidence 79999999999999999877753221 1237776664421 12211110 000111122335668999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
|++.+ -...+++++.+.+.+ .+ .+++.|+.|
T Consensus 69 F~alp----------------~~~s~~~~~~l~~~g-~~--~~VIDlSsd 99 (147)
T d1mb4a1 69 ITCQG----------------GSYTEKVYPALRQAG-WK--GYWIDAAST 99 (147)
T ss_dssp EECSC----------------HHHHHHHHHHHHHTT-CC--SEEEESSST
T ss_pred EEecC----------------chHHHHHhHHHHHcC-Cc--eEEEeCCcc
Confidence 99863 133567788877765 33 345666553
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.88 E-value=2.8e-05 Score=66.39 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=95.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCC-------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD------- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~------- 74 (320)
.+.+.||||++.+|.+++..|++.|. .|++.|+++ +.++....++...... +..+++...+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga-------~V~~~~r~~--~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~ 80 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVS-------HVICISRTQ--KSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINK 80 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSS-------EEEEEESSH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 35677889999999999999999997 899999864 5565555555443211 1122222111
Q ss_pred hhhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 75 AVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
..+.+...|++|+.||...... .+ ....+..|+... +..++.+++.. .+.+|++|+.....
T Consensus 81 ~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~IVnisS~~~~~------- 151 (251)
T d2c07a1 81 ILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGLT------- 151 (251)
T ss_dssp HHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH-------
T ss_pred HHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC--CeEEEEECCHHhcC-------
Confidence 1233457899999998754321 12 334556665444 55555666653 57888888654211
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.|..-.|+.++-.-..|-+.+|+.++ +..|+.
T Consensus 152 --~~~~~~~Y~asKaal~~ltr~lA~el~--~~gIrV 184 (251)
T d2c07a1 152 --GNVGQANYSSSKAGVIGFTKSLAKELA--SRNITV 184 (251)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHhh--hhCeEE
Confidence 223222466666666677777888775 456764
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.88 E-value=3.4e-05 Score=67.71 Aligned_cols=161 Identities=13% Similarity=0.130 Sum_probs=94.5
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-------chhHHHHHHHhcccCCCCcceEEeC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-------EALNGVKMELVDAAFPLLKGVVATT 73 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-------~~~~~~~~dl~~~~~~~~~~v~~~~ 73 (320)
|+=+.+.++||||++.+|.+++..|+++|. .|++.|++.+. +.++....++.........++....
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga-------~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 75 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGA-------LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVE 75 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGG
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHH
Confidence 333456788999999999999999999997 89999875421 1222222233221111111111111
Q ss_pred C-------hhhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchh
Q 020875 74 D-------AVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANT 136 (320)
Q Consensus 74 ~-------~~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~ 136 (320)
+ ..+.+...|++|+.||+..... .+ .+..+..|+.. ++..++.+++.. .+++|++|+....
T Consensus 76 ~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IV~isS~~~~ 153 (302)
T d1gz6a_ 76 AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASGI 153 (302)
T ss_dssp GHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC--CcEEEEeCChhhc
Confidence 1 2233557899999999864321 12 33456677654 445555666653 4788888864321
Q ss_pred hHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
. +.|..-.|+.++---..|-+.+|..+. +..|+.
T Consensus 154 -------~--~~~~~~~Y~asKaal~~lt~~la~E~~--~~gIrV 187 (302)
T d1gz6a_ 154 -------Y--GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIHC 187 (302)
T ss_dssp -------H--CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE
T ss_pred -------C--CCCCcHHHHHHHHHHHHHHHHHHHHHh--ccCCce
Confidence 1 223222466666666677777888765 456764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=97.87 E-value=5.7e-05 Score=64.65 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=94.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cC---CCCcceEEeCCh------
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF---PLLKGVVATTDA------ 75 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~---~~~~~v~~~~~~------ 75 (320)
+.++||||++.+|.+++..|++.|. .|++.|+++ .+.++....++... .. ....+++...+.
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga-------~V~~~~r~~-~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~ 76 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGA-------DIVLNGFGD-AAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-------EEEEECCSC-HHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCc-HHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 4788999999999999999999997 899999864 23333333333221 10 111222222222
Q ss_pred -hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 76 -VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 76 -~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
.+.+-..|++|+.||...... .+ ....+..|+.. ++..++.+++.. .+++|++++....
T Consensus 77 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~-------- 146 (260)
T d1x1ta1 77 AVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGL-------- 146 (260)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT--------
T ss_pred HHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC--CceEeecccccce--------
Confidence 223457899999999754221 12 33456666544 455566666653 4788888865432
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++--...|-+.+|..++ +..|+.
T Consensus 147 -~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV 180 (260)
T d1x1ta1 147 -VASANKSAYVAAKHGVVGFTKVTALETA--GQGITA 180 (260)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEE
T ss_pred -eccCCcchhhhhhhhHHHhHHHHHHHhc--hhCcEE
Confidence 1223222466666666678888888876 566763
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.87 E-value=4.9e-05 Score=64.93 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=96.3
Q ss_pred EE-EEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCC-------h
Q 020875 7 RV-LVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD-------A 75 (320)
Q Consensus 7 kI-~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~-------~ 75 (320)
|| +||||++.+|.+++..|++.|. .|++.|+++ ++++....++.+.... +..+++...+ .
T Consensus 3 KValITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~ 73 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGL-------RVFVCARGE--EGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAV 73 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 45 7899999999999999999997 899999874 5565555555443211 1112222111 2
Q ss_pred hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhh----cCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 76 VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQH----AAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~----~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.+.+-..|++|+.||...... .+ .++.+..|+.....+.+.+.++ ....+.+|++++....
T Consensus 74 ~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~--------- 144 (257)
T d2rhca1 74 VERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK--------- 144 (257)
T ss_dssp HHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGT---------
T ss_pred HHHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccc---------
Confidence 233457899999999854321 12 3456788888777777765432 1123567777654321
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++---..|-+.+|..+. +..|+.
T Consensus 145 ~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV 178 (257)
T d2rhca1 145 QGVVHAAPYSASKHGVVGFTKALGLELA--RTGITV 178 (257)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHhh--hhCcEE
Confidence 2233222466666666677888888876 456763
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.85 E-value=1.2e-05 Score=63.27 Aligned_cols=64 Identities=11% Similarity=0.021 Sum_probs=45.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||+|+| .|.+|+.++..|.++|+ ++..+|+... ........... +. .+..++++++|+|
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~-------~v~~~~~~~~-~~~~~~~~~~~---------~~--~~~~e~~~~~diI 60 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGV-------EVVTSLEGRS-PSTIERARTVG---------VT--ETSEEDVYSCPVV 60 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC-------EEEECCTTCC-HHHHHHHHHHT---------CE--ECCHHHHHTSSEE
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCC-------eEEEEcCchh-HHHHHhhhccc---------cc--ccHHHHHhhcCeE
Confidence 7999999 79999999999999997 7888887542 11111111111 11 1456889999999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 61 i~~v 64 (152)
T d1i36a2 61 ISAV 64 (152)
T ss_dssp EECS
T ss_pred EEEe
Confidence 9975
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=97.84 E-value=4.9e-05 Score=64.63 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=91.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC-------hhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~~ 77 (320)
.+.++||||++.+|.+++..|++.|. .|++.|+++. +.++....+.......+..+++...+ ..+
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga-------~V~~~~~~~~-~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~ 76 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGA-------DIAIADLVPA-PEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVIS 76 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSCC-HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCch-HHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999997 8999998753 22222211111111011122222212 122
Q ss_pred hcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 78 ACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
.+-..|++|+.||...... .+ .+..+..|+.. ++.+++.+++.. .+.+|++|+.... .+
T Consensus 77 ~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~---------~~ 145 (247)
T d2ew8a1 77 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYW---------LK 145 (247)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGG---------SC
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC--CCCccccccchhc---------cc
Confidence 3457899999999754221 12 33456666554 445555666653 4778888865421 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|..-.|+.++---..|-+.+|..++ +..|+.
T Consensus 146 ~~~~~~Y~asKaal~~ltk~lA~ela--~~gIrV 177 (247)
T d2ew8a1 146 IEAYTHYISTKAANIGFTRALASDLG--KDGITV 177 (247)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CcccccchhhhccHHHHHHHHHHHhc--ccCeEE
Confidence 23222466666556667777888775 456763
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=97.83 E-value=4.5e-05 Score=65.58 Aligned_cols=154 Identities=16% Similarity=0.096 Sum_probs=92.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC--CCcceEEeCCh-------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP--LLKGVVATTDA------- 75 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~--~~~~v~~~~~~------- 75 (320)
.+.++||||++.+|.+++..|++.|. +|++.|+++ ++++....++...... ...+++...+.
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGA-------KVVIADIAD--DHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTT 76 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHH
Confidence 35788999999999999999999997 899999874 5555555555432110 11122211111
Q ss_pred hhhcCCCcEEEEeCCCCCC-C----CCC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 76 VEACTGVNIAVMVGGFPRK-E----GME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~-~----~~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
.+.+...|++|+.||.... + ..+ .+..+..|+.. ++..++.+.+.. .+.+|++++....
T Consensus 77 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~g~ii~iss~~~~------- 147 (268)
T d2bgka1 77 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK--KGSIVFTASISSF------- 147 (268)
T ss_dssp HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT--CEEEEEECCGGGT-------
T ss_pred HHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC--CCCcccccccccc-------
Confidence 2234578999999986432 1 122 23355666654 444555555543 4677777765421
Q ss_pred HCCCCCCCc-EEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 144 FAPSIPAKN-ITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 144 ~~~~~~~~~-i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.+... .|+.++--...|-+.+|..++ +..|+
T Consensus 148 --~~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIr 181 (268)
T d2bgka1 148 --TAGEGVSHVYTATKHAVLGLTTSLCTELG--EYGIR 181 (268)
T ss_dssp --CCCTTSCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred --ccccccccccchhHHHHHhCHHHHHHHhC--hhCeE
Confidence 1112222 456666666677777888876 45666
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.83 E-value=0.00014 Score=62.52 Aligned_cols=157 Identities=14% Similarity=0.088 Sum_probs=93.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeC-------Ch
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATT-------DA 75 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~-------~~ 75 (320)
+++.||||++-+|.+++..|+..|. +|++.|++. .+.++.....+....... ..++.... ..
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga-------~Vvi~~~~~-~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~ 90 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGC-------KVIVNYANS-TESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEA 90 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCc-hHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999999999997 899998864 234443333333221110 01111111 12
Q ss_pred hhhcCCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 76 VEACTGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
.+.+...|++|+.+|...... . +..+.+..|+.....+.+.+..+-.....++++++.... ....+
T Consensus 91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~--------~~~~~ 162 (272)
T d1g0oa_ 91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ--------AKAVP 162 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT--------CSSCS
T ss_pred HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccc--------ccccc
Confidence 334557899999998754321 1 234456777777777777666654345666777654321 11122
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..-.|+.++---..+-+.+|..++ +..||
T Consensus 163 ~~~~Y~asKaal~~ltk~lA~e~~--~~gIr 191 (272)
T d1g0oa_ 163 KHAVYSGSKGAIETFARCMAIDMA--DKKIT 191 (272)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred chhhHHHHHHHHHHHHHHHHHHhc--hhCeE
Confidence 112456666555677777888876 45565
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=97.83 E-value=8.9e-05 Score=63.01 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=91.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC-------Chhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT-------DAVE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~-------~~~~ 77 (320)
.+.++||||++.+|.+++..|++.|. .|++.|++++ ..+ ....+.... +..+++... ...+
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~-------~V~~~~~~~~--~~~-~~~~~~~~~--~~~Dv~~~~~v~~~~~~~~~ 72 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGA-------LVALCDLRPE--GKE-VAEAIGGAF--FQVDLEDERERVRFVEEAAY 72 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSTT--HHH-HHHHHTCEE--EECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCHH--HHH-HHHHcCCeE--EEEeCCCHHHHHHHHHHHHH
Confidence 35889999999999999999999997 8999998752 221 121221111 111221111 1233
Q ss_pred hcCCCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 78 ACTGVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
.+-..|++|+.||..... ..+ .+..+..|+.... ...+.+++. ..+.+|++++.... .+
T Consensus 73 ~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~Ii~isS~~~~---------~~ 141 (248)
T d2d1ya1 73 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV--GGGAIVNVASVQGL---------FA 141 (248)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCGGGT---------SB
T ss_pred hcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc--cccccccccccccc---------cc
Confidence 456789999999875321 122 2345666765544 445555554 35788888865421 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|..-.|+.++---..|-+.+|+.++ +..|+.
T Consensus 142 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV 173 (248)
T d2d1ya1 142 EQENAAYNASKGGLVNLTRSLALDLA--PLRIRV 173 (248)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhh--hhCcEE
Confidence 33222466666666677778888876 456764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=97.81 E-value=5.6e-05 Score=64.74 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=95.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCC-------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD------- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~------- 74 (320)
.+.++||||++.+|.+++..|++.|. .|++.|+++ ++++....++.+.... +..+++...+
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~ 75 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGT-------AIALLDMNR--EALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDS 75 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 45889999999999999999999997 899999874 5555555555433211 1112211111
Q ss_pred hhhhcCCCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 75 AVEACTGVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
..+.+...|++|+.||.... + ..+ ....+..|+... +..++.+.+. ..+.+|++|+....
T Consensus 76 ~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~--~~G~II~isS~~~~------- 146 (260)
T d1zema1 76 VVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ--NYGRIVNTASMAGV------- 146 (260)
T ss_dssp HHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCHHHH-------
T ss_pred HHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh--cCCCCCeeechhhc-------
Confidence 22334578999999986432 1 122 334556666544 4445555554 35788888864321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++--...|-+.+|..++ +..|+.
T Consensus 147 --~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV 180 (260)
T d1zema1 147 --KGPPNMAAYGTSKGAIIALTETAALDLA--PYNIRV 180 (260)
T ss_dssp --SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --cCCcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEE
Confidence 1233222567776666778888888876 556763
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=97.81 E-value=3.5e-05 Score=66.16 Aligned_cols=157 Identities=10% Similarity=0.094 Sum_probs=93.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCCh------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDA------ 75 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~------ 75 (320)
.+.+.||||++.+|.+++..|++.|. .|++.+++. ++.++....++...... ...+++...+.
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~-------~Vv~~~r~~-~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~ 78 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKA-------KVVVNYRSK-EDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQS 78 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCc-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 46888999999999999999999997 899999864 23344444444332211 11122211111
Q ss_pred -hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 76 -VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 76 -~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
.+.+...|++|+.||...... .+ ....+..|+.. ++..++.+.+.. ....++++|+....
T Consensus 79 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~~Iv~isS~~~~-------- 149 (261)
T d1geea_ 79 AIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEND-IKGTVINMSSVHEK-------- 149 (261)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCCEEEEECCGGGT--------
T ss_pred HHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcccc-ccccccccccchhc--------
Confidence 223457899999999754221 22 23456667554 455566666554 34456667754321
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++---..|-+.+|..++ +..|+.
T Consensus 150 -~~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrV 183 (261)
T d1geea_ 150 -IPWPLFVHYAASKGGMKLMTETLALEYA--PKGIRV 183 (261)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred -ccCccccccccCCccchhhHHHHHHHhh--hhCcEE
Confidence 1233222466666666677777888876 455663
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.80 E-value=0.00011 Score=62.44 Aligned_cols=156 Identities=12% Similarity=0.138 Sum_probs=91.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhccc-CC---CCcceEEeCC-----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP---LLKGVVATTD----- 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~-~~---~~~~v~~~~~----- 74 (320)
+.+.++||||++.+|.+++..|++.|. .|++.|+++ +++.....++.+.. .. +..+++...+
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~ 74 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC-------SVVVASRNL--EEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLL 74 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHH
Confidence 345899999999999999999999997 899999874 44444444443221 11 1122222111
Q ss_pred --hhhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 75 --AVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 75 --~~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
..+.+...|++|+.||...... .+ .+..+..|+... +..++.+++.. .+.+|++++-...
T Consensus 75 ~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~i~S~~~~------ 146 (251)
T d1vl8a_ 75 EAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD--NPSIINIGSLTVE------ 146 (251)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS--SCEEEEECCGGGT------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc--cccccccccchhc------
Confidence 1233457899999999754221 12 334566676544 44555555543 4677777753210
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..+.+..-.|+.++-....|-+.+|..++ +..|+
T Consensus 147 --~~~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIr 180 (251)
T d1vl8a_ 147 --EVTMPNISAYAASKGGVASLTKALAKEWG--RYGIR 180 (251)
T ss_dssp --CCCSSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred --cccCccccchHHHHHhHHHHHHHHHHHhc--ccCeE
Confidence 01222112466666656667777877765 44565
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00017 Score=61.06 Aligned_cols=120 Identities=21% Similarity=0.179 Sum_probs=76.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCC-------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTD------- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~------- 74 (320)
-+.++||||++-+|..++..|+++|. .|++.|+++ ++++....++....... ..+++...+
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~G~-------~V~l~~r~~--~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 77 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKLKS-------KLVLWDINK--HGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKK 77 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 35788999999999999999999997 899999974 56665555554322111 112222111
Q ss_pred hhhhcCCCcEEEEeCCCCCCCCC------CHHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 75 AVEACTGVNIAVMVGGFPRKEGM------ERKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~~------~r~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
..+.+...|++|+.||....... ..++.+..|+. .++.+++.+.+.. .+++|++++...
T Consensus 78 i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~G~Iv~isS~~~ 146 (244)
T d1yb1a_ 78 VKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN--HGHIVTVASAAG 146 (244)
T ss_dssp HHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCC-
T ss_pred HHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC--CceEEEeecchh
Confidence 12345579999999987643221 12345555544 4555666676653 578888886653
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=97.77 E-value=2.5e-05 Score=66.92 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=92.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeCC------
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATTD------ 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~~------ 74 (320)
+.++++||||++.+|.+++..|++.|. .|++.++++ ++++....++.+..... ..++....+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-------~V~i~~r~~--~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 75 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-------RVYTCSRNE--KELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQ 75 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHH
Confidence 346899999999999999999999997 899999874 44544444443322111 112211111
Q ss_pred -hhhhcC-CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 75 -AVEACT-GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 75 -~~~al~-~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
..+.+. ..|++|+.||...... .+ ....+..|+... +.+.+.+.+. +.+.+|++|.....
T Consensus 76 ~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~--~~g~ii~isS~~~~------ 147 (258)
T d1ae1a_ 76 TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS--QNGNVIFLSSIAGF------ 147 (258)
T ss_dssp HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TSEEEEEECCGGGT------
T ss_pred HHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc--cccccccccccccc------
Confidence 112232 3789999998754321 12 334455665444 4444555554 35778888765432
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|..-.|+.++---..|-+.+|+.++ +..|+
T Consensus 148 ---~~~~~~~~Y~~sK~al~~lt~~lA~el~--~~gIr 180 (258)
T d1ae1a_ 148 ---SALPSVSLYSASKGAINQMTKSLACEWA--KDNIR 180 (258)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEE
T ss_pred ---cccccchhHHHHHHHHHHHHHHHHHhcC--cCcEE
Confidence 2333222466666666677778888877 45565
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.75 E-value=1.3e-05 Score=67.85 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=90.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-chhHHHHHHHhcccCCCCcceE-EeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDAAFPLLKGVV-ATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-~~~~~~~~dl~~~~~~~~~~v~-~~~~~~~al~~a 82 (320)
.+++.||||++.+|.+++..|++.|. .|++.|++++. +.+.....|+.+... +. ......+.+...
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga-------~V~~~~r~~~~~~~~~~~~~Dv~~~~~-----v~~~~~~~~~~~g~i 74 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGH-------KVAVTHRGSGAPKGLFGVEVDVTDSDA-----VDRAFTAVEEHQGPV 74 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSSCCCTTSEEEECCTTCHHH-----HHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCcchhcCceEEEEecCCHHH-----HHHHHHHHHHhcCCc
Confidence 46899999999999999999999997 89999987532 111222334443320 00 001234445678
Q ss_pred cEEEEeCCCCCCC---CCC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCc
Q 020875 83 NIAVMVGGFPRKE---GME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKN 152 (320)
Q Consensus 83 DvVi~~ag~~~~~---~~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~ 152 (320)
|++|+.||..... ..+ .++.++.|+... +..++.+.+.. .+++|++|+-.... +.+..-
T Consensus 75 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~Iv~isS~~~~~---------~~~~~~ 143 (237)
T d1uzma1 75 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK--FGRMIFIGSVSGLW---------GIGNQA 143 (237)
T ss_dssp SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCCC--------------CCH
T ss_pred eEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC--CCceEEEcchhhcc---------CCcccH
Confidence 9999999975421 122 334566776554 45566666653 46788888644221 112112
Q ss_pred EEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 153 ITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 153 i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|+.++---..|-+.+|+.+. +..|+.
T Consensus 144 ~Y~asKaal~~lt~~lA~e~~--~~gIrV 170 (237)
T d1uzma1 144 NYAASKAGVIGMARSIARELS--KANVTA 170 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred HHHHHHHHHHHHHHHHHhhhh--cCCcee
Confidence 456665555667777887765 456663
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.75 E-value=4.9e-05 Score=60.30 Aligned_cols=65 Identities=20% Similarity=0.376 Sum_probs=48.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|+||++|| .|.+|++++..|++.|+ +|..+|+++ ++.+ ++.... .....+..++++++|+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~-------~v~~~d~~~--~~~~----~~~~~~------~~~~~~~~e~~~~~di 60 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGY-------LLNVFDLVQ--SAVD----GLVAAG------ASAARSARDAVQGADV 60 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSSH--HHHH----HHHHTT------CEECSSHHHHHTSCSE
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCC-------eEEEEECch--hhhh----hhhhhh------ccccchhhhhccccCe
Confidence 45999999 79999999999999997 899999863 3222 222221 2223467899999999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
|+.+.
T Consensus 61 ii~~v 65 (162)
T d3cuma2 61 VISML 65 (162)
T ss_dssp EEECC
T ss_pred eeecc
Confidence 99875
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=1e-05 Score=69.16 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=91.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC-------hhh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVE 77 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~~ 77 (320)
.+.++||||++.+|.+++..|++.|. .|++.|+++ +.++....++.+.. ....+++...+ ..+
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~~~~~~-~~~~Dvs~~~~v~~~~~~~~~ 75 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGA-------RVVICDKDE--SGGRALEQELPGAV-FILCDVTQEDDVKTLVSETIR 75 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHCTTEE-EEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHhcCCCe-EEEccCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999997 899999874 44544433333211 11112211111 223
Q ss_pred hcCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 78 ACTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
.+...|++|+.||...... .+ .+..+..|+.. ++..++.+++. .+.+|++|+.... .
T Consensus 76 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~---~G~Ii~isS~~~~-------~-- 143 (250)
T d1ydea1 76 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS---QGNVINISSLVGA-------I-- 143 (250)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCHHHH-------H--
T ss_pred hcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC---CCCCccccccccc-------c--
Confidence 3457899999998643211 12 23456666554 44555566543 2678888764321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+.|..-.|+.++---..|-+.+|+.+. +..|+
T Consensus 144 ~~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIr 175 (250)
T d1ydea1 144 GQAQAVPYVATKGAVTAMTKALALDES--PYGVR 175 (250)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred cccCcchhHHHHhhHHHHHHHHHHHhc--ccCeE
Confidence 223222466666666677777888875 45566
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=97.73 E-value=0.00014 Score=61.91 Aligned_cols=158 Identities=11% Similarity=0.076 Sum_probs=90.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-----CCcceEE----
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVA---- 71 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-----~~~~v~~---- 71 (320)
|+-+.+.|+||||++.||..++..|++.|. .+++.+++.+ +.+.. .++...... ...++..
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~-------~vii~~r~~~--~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~ 70 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNL-------KNFVILDRVE--NPTAL-AELKAINPKVNITFHTYDVTVPVAE 70 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCC-------SEEEEEESSC--CHHHH-HHHHHHCTTSEEEEEECCTTSCHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEECCcc--cHHHH-HHHHhhCCCCCEEEEEeecCCCHHH
Confidence 666778999999999999999999999997 5666654432 22221 122211100 0111110
Q ss_pred ----eCChhhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHH----HHHHHHHHHhhhc-CCCeEEEEEcCcchhhHHHHH
Q 020875 72 ----TTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS----IYKAQASALEQHA-APNCKVLVVANPANTNALILK 142 (320)
Q Consensus 72 ----~~~~~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~----~~~~i~~~i~~~~-~~~~~viv~snP~~~~~~~~~ 142 (320)
.....+.+...|++|+.||... ..+.+..+..|+. .++.+++.+.+.. .+.+++|++++-...
T Consensus 71 ~~~~~~~~~~~~g~iDilvnnAG~~~--~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~------ 142 (254)
T d1sbya1 71 SKKLLKKIFDQLKTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF------ 142 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT------
T ss_pred HHHHHHHHHHHcCCCCEEEeCCCCCC--HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhc------
Confidence 0112233467899999999764 3455667777876 4455555665432 134677777754421
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++--...|-+.+|+.+. +..|+.
T Consensus 143 ---~~~~~~~~Y~asKaal~~~t~~la~el~--~~gIrV 176 (254)
T d1sbya1 143 ---NAIHQVPVYSASKAAVVSFTNSLAKLAP--ITGVTA 176 (254)
T ss_dssp ---SCCTTSHHHHHHHHHHHHHHHHHHHHHH--HHSEEE
T ss_pred ---cCCCCCHHHHHHHHHHHHHHHHHHhhcc--ccCeEE
Confidence 1222222456665555566666776653 345663
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.72 E-value=2.1e-05 Score=61.82 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=45.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
|||++|| +|.+|++++..|+..+.. ++.++|+++ ++++....+. .+....+ .++++++|+|
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~------~i~v~~r~~--~~~~~l~~~~---------~~~~~~~-~~~v~~~Div 61 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGY------RIYIANRGA--EKRERLEKEL---------GVETSAT-LPELHSDDVL 61 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSC------EEEEECSSH--HHHHHHHHHT---------CCEEESS-CCCCCTTSEE
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCC------cEEEEeCCh--hHHHHhhhhc---------ccccccc-cccccccceE
Confidence 7999999 699999999988877631 899999874 4433222211 2333444 3568899999
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|++.
T Consensus 62 ~lav 65 (152)
T d1yqga2 62 ILAV 65 (152)
T ss_dssp EECS
T ss_pred EEec
Confidence 9875
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=97.72 E-value=0.00019 Score=61.28 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=93.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCC------
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD------ 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~------ 74 (320)
+.+.++||||++.+|.+++..|++.|. .|++.|+++ ++++....++...... ...+++...+
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 77 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-------SVYTCSRNQ--KELNDCLTQWRSKGFKVEASVCDLSSRSERQELMN 77 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHH
Confidence 346889999999999999999999997 899999864 5555444455432211 1112221111
Q ss_pred -hhhhcC-CCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 75 -AVEACT-GVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 75 -~~~al~-~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
..+.+. ..|++|+.||...... .+ .+..+..|+.... ...+.+++. ..+.+|++++-...
T Consensus 78 ~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~isS~~~~------ 149 (259)
T d2ae2a_ 78 TVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS--ERGNVVFISSVSGA------ 149 (259)
T ss_dssp HHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--SSEEEEEECCGGGT------
T ss_pred HHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh--cccccccccccccc------
Confidence 112233 4799999999754322 22 3345667765444 444445544 35788888864321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++---..|-+.+|..++ +..|+.
T Consensus 150 ---~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV 183 (259)
T d2ae2a_ 150 ---LAVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRV 183 (259)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE
T ss_pred ---cccccccchHHHHHHHHHHHHHHHHHhC--cCceEE
Confidence 1222222456666556667777888875 456663
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=97.69 E-value=0.00029 Score=60.09 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=92.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-----CCcceEEeCC-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTD----- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-----~~~~v~~~~~----- 74 (320)
.+.++||||++.+|.+++..|++.|. .|++.|+++ ++++....++...... ...+++...+
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~ 74 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGA-------KLSLVDVSS--EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYV 74 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHH
Confidence 35788999999999999999999997 899999874 4454444444322110 1112211111
Q ss_pred --hhhhcCCCcEEEEeCCCCCC--CC--CC---HHHHHHhhHHHHHHH----HHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 75 --AVEACTGVNIAVMVGGFPRK--EG--ME---RKDVMSKNVSIYKAQ----ASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 75 --~~~al~~aDvVi~~ag~~~~--~~--~~---r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
..+.+...|++|+.||+... +- .+ .+..+..|+.....+ .+.+++. ..+.+|++++....
T Consensus 75 ~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Ii~isS~~~~----- 147 (258)
T d1iy8a_ 75 TATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ--GSGMVVNTASVGGI----- 147 (258)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCGGGT-----
T ss_pred HHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh--cCCCCcccccHhhc-----
Confidence 12334578999999996422 11 22 334566776554444 4455544 34678888764421
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.+.|..-.|+.++---..|-+.+|..++ +..|+.
T Consensus 148 ----~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV 181 (258)
T d1iy8a_ 148 ----RGIGNQSGYAAAKHGVVGLTRNSAVEYG--RYGIRI 181 (258)
T ss_dssp ----SBCSSBHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred ----cCCCCchHHHHHHHHHHHHHHHHHHHhC--ccCceE
Confidence 1233222456666656677777888775 456663
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=97.68 E-value=0.00029 Score=59.41 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=94.7
Q ss_pred E-EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCC-------h
Q 020875 7 R-VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD-------A 75 (320)
Q Consensus 7 k-I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~-------~ 75 (320)
+ |+||||++-+|.+++..|++.|.--......+++.++++ ++++....++...... ...+++...+ .
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~--~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~ 79 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA--ADLEKISLECRAEGALTDTITADISDMADVRRLTTHI 79 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH--HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 5 578999999999999999998862111112488899864 5555555555432211 1112221111 2
Q ss_pred hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHC
Q 020875 76 VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFA 145 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~ 145 (320)
.+.+...|++|+.||...... .+ .+..+..|+. .++.+++.+++.. .+.+|++|+-...
T Consensus 80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~--------- 148 (240)
T d2bd0a1 80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH--SGHIFFITSVAAT--------- 148 (240)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGT---------
T ss_pred HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC--CCceEEEechhhc---------
Confidence 233457899999998754221 12 3345666755 4555666666653 5788888765421
Q ss_pred CCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 146 PSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 146 ~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.+.|..-.|+.++---..|-+.+|..+. +..|+.-
T Consensus 149 ~~~~~~~~Y~asK~al~~lt~~la~el~--~~gIrvn 183 (240)
T d2bd0a1 149 KAFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRIT 183 (240)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhC--cCCeEEE
Confidence 2333323566666666667777777765 4567743
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.68 E-value=5.5e-05 Score=64.67 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=90.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCC-------h
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD-------A 75 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~-------~ 75 (320)
+.++||||++.||.+++..|++.|. +|++.+++. .+.++.....+.+.... +..+++...+ .
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-------~Vvi~~~~~-~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~ 78 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGA-------SVVVNYGSS-SKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKA 78 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEcCCC-hHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999997 788765542 23344333444332211 1111111111 2
Q ss_pred hhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCC
Q 020875 76 VEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIP 149 (320)
Q Consensus 76 ~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~ 149 (320)
.+.+-..|++|+.||...... .+ .+..+..|+.....+.+.+.++-..+..++++++.... ..++|
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~--------~~~~~ 150 (259)
T d1ja9a_ 79 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAV--------MTGIP 150 (259)
T ss_dssp HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGT--------CCSCC
T ss_pred HHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccc--------ccCCC
Confidence 223447899999998753211 12 33456677765555555554443233455556544321 12333
Q ss_pred CCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 150 AKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 150 ~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
..-.|+.++--...+-+.+|+.++ +..|+.
T Consensus 151 ~~~~Y~asK~al~~l~r~lA~e~~--~~gIrv 180 (259)
T d1ja9a_ 151 NHALYAGSKAAVEGFCRAFAVDCG--AKGVTV 180 (259)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred CchhHHHHHHHHHHHHHHHHHHHh--hcCeEE
Confidence 322466676666778888888887 445653
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.66 E-value=0.0004 Score=59.54 Aligned_cols=154 Identities=11% Similarity=0.144 Sum_probs=89.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC------CCcceEEeCC----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP------LLKGVVATTD---- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~------~~~~v~~~~~---- 74 (320)
.+.++||||++.+|.+++..|++.|. .|++.|+++ ++++....++...... ...+++...+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-------~V~l~~r~~--~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~ 75 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGA-------NVTITGRSS--ERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQI 75 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHH
Confidence 35888999999999999999999997 899999874 5566555555443211 0112211111
Q ss_pred ---hhhhcCCCcEEEEeCCCCCCCC-------CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhh
Q 020875 75 ---AVEACTGVNIAVMVGGFPRKEG-------ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTN 137 (320)
Q Consensus 75 ---~~~al~~aDvVi~~ag~~~~~~-------~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~ 137 (320)
..+.+...|++|+.||...... ++ ....+..|+... +...+.+++. +.. +|++++....
T Consensus 76 ~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~-iI~~~Ss~a~- 151 (272)
T d1xkqa_ 76 INSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS--KGE-IVNVSSIVAG- 151 (272)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCE-EEEECCGGGS-
T ss_pred HHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc--CCc-cccccchhcc-
Confidence 2223457899999998754211 12 233456666544 4445555543 334 4555443211
Q ss_pred HHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 138 ALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..+.|..-.|+.++-.-..|-+.+|..++ +..|+
T Consensus 152 -------~~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIr 185 (272)
T d1xkqa_ 152 -------PQAQPDFLYYAIAKAALDQYTRSTAIDLA--KFGIR 185 (272)
T ss_dssp -------SSCCCSSHHHHHHHHHHHHHHHHHHHHHH--TTTCE
T ss_pred -------ccCCCCcchhhhHHHHHHHHHHHHHHHhc--ccCeE
Confidence 11233222466666666677777887775 45565
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00019 Score=61.09 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=74.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-----CCcceEEeCCh----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTDA---- 75 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-----~~~~v~~~~~~---- 75 (320)
-+.++||||++.+|.+++..|++.|. .|++.|+++ ++++....++...... ...+++...+.
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGA-------KVALVDWNL--EAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTF 73 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHH
Confidence 45788999999999999999999997 899999974 4455444444332110 11122111111
Q ss_pred ---hhhcCCCcEEEEeCCCCCCCCCCHHHHHHhhHH----HHHHHHHHHhhhcC-CCeEEEEEcCcc
Q 020875 76 ---VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVS----IYKAQASALEQHAA-PNCKVLVVANPA 134 (320)
Q Consensus 76 ---~~al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~----~~~~i~~~i~~~~~-~~~~viv~snP~ 134 (320)
.+.+-..|++|+.||.... .+.++.+..|+. .++..++.+.+... ..+.+|++|+..
T Consensus 74 ~~~~~~~G~iDilVnnAg~~~~--~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~ 138 (254)
T d2gdza1 74 RKVVDHFGRLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA 138 (254)
T ss_dssp HHHHHHHSCCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred HHHHHHcCCcCeeccccccccc--ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence 2234578999999998642 345566666664 44555666655431 236788887654
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00047 Score=59.96 Aligned_cols=154 Identities=17% Similarity=0.128 Sum_probs=92.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CC-------cceEEeCC--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LL-------KGVVATTD-- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~-------~~v~~~~~-- 74 (320)
.+.++||||++.||.+++..|++.|. .|++.|+++ ++++....++...... .. .+++...+
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga-------~Vvi~~r~~--~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~ 82 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGS-------NVVIASRKL--ERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 82 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHH
Confidence 36889999999999999999999997 899999974 5555555555432111 01 11111111
Q ss_pred -----hhhhcCCCcEEEEeCCCCCCCC---C---CHHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHH
Q 020875 75 -----AVEACTGVNIAVMVGGFPRKEG---M---ERKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNAL 139 (320)
Q Consensus 75 -----~~~al~~aDvVi~~ag~~~~~~---~---~r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~ 139 (320)
..+.+...|++|+.||...... . +.+..+..|+... +..++.+.+.. ...+|++|.+.
T Consensus 83 ~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~g~Ii~~ss~~----- 155 (297)
T d1yxma1 83 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH--GGSIVNIIVPT----- 155 (297)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCCC-----
T ss_pred HHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc--ccccccccccc-----
Confidence 1222457899999998754221 1 2334566776544 44555555554 35566665432
Q ss_pred HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
..++|..-.|+.++---..|-+.+|..++ +..|+.
T Consensus 156 -----~~~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrV 190 (297)
T d1yxma1 156 -----KAGFPLAVHSGAARAGVYNLTKSLALEWA--CSGIRI 190 (297)
T ss_dssp -----TTCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEE
T ss_pred -----cccccccccchhHHHHHHHHHHHHHHHhc--ccCceE
Confidence 11233222455565556677778888875 456663
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.63 E-value=5.3e-05 Score=59.00 Aligned_cols=73 Identities=23% Similarity=0.298 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
++|||+|+||+|++|.-++..|.++++- ..++.++..+.+ .|+... . ...+........+.+.++|
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~hP----~~~l~~~~s~~~----~Gk~i~--~----~~~~~~~~~~~~~~~~~~d 66 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDFP----LHRLHLLASAES----AGQRMG--F----AESSLRVGDVDSFDFSSVG 66 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCC----CSCEEEEECTTT----TTCEEE--E----TTEEEECEEGGGCCGGGCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCC----ceEEEEEeeccc----CCccee--e----ccccchhccchhhhhccce
Confidence 4799999999999999999988765541 237777765321 222111 1 1122333222345678999
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
++|++++
T Consensus 67 ~vf~a~p 73 (144)
T d2hjsa1 67 LAFFAAA 73 (144)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 9998863
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=97.62 E-value=9.3e-05 Score=62.73 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=91.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCC-------hh
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTD-------AV 76 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~-------~~ 76 (320)
=|+||||++.+|.+++..|++.|. .|++.|.+. .+.++.....+..... .+..+++...+ ..
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga-------~V~i~~~~~-~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 74 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGC-------KVLVNYARS-AKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAI 74 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 367889999999999999999997 788877643 2334433333332211 11112211111 22
Q ss_pred hhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHH----HHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCC
Q 020875 77 EACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP 146 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~ 146 (320)
+.+...|++|+.||...... .+ .+..++.|+.. ++..++.+.+. ..+.+|++|+-... .
T Consensus 75 ~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~IVnisS~~~~-------~-- 143 (244)
T d1edoa_ 75 DAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK--RKGRIINIASVVGL-------I-- 143 (244)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCTHHH-------H--
T ss_pred HHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc--CCcEEEEEcChhhc-------C--
Confidence 33457899999998754321 12 33456666554 45556666654 35788888864321 1
Q ss_pred CCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 147 SIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 147 ~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
+.|..-.|+.++-.-..|-+.+|..++ +..|+.
T Consensus 144 ~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrv 176 (244)
T d1edoa_ 144 GNIGQANYAAAKAGVIGFSKTAAREGA--SRNINV 176 (244)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEE
T ss_pred CCCCCHHHHHHHHHHHHChHHHHHHHh--hhCcEE
Confidence 233223567777767778888888876 456774
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=97.61 E-value=0.00059 Score=58.90 Aligned_cols=155 Identities=6% Similarity=-0.008 Sum_probs=86.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC----CCcceEEeC-------C
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATT-------D 74 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~~~-------~ 74 (320)
+.++||||+|.+|.+++..|++.|. +|++.|++. +++.....++...... ...++.... .
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga-------~Vii~~r~~--~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGA-------QCVIASRKM--DVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-------EEEEEECCH--HHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhh
Confidence 6788999999999999999999997 899999874 4444444445322110 001111111 1
Q ss_pred hhhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHH
Q 020875 75 AVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKEF 144 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~ 144 (320)
..+.+...|++|+.||...... .+ ..+.+..|.... ...+..+.... ....+++.++.... .
T Consensus 97 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~~i~~~ss~~~~-------~ 168 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQ-KGAAFLSITTIYAE-------T 168 (294)
T ss_dssp HHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEECCTHHH-------H
T ss_pred hhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhccccccc-ccccccccccchhh-------h
Confidence 2233457899999998754322 11 223344443332 33334444333 34455555543211 1
Q ss_pred CCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 145 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 145 ~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
..|..-.|+.++---..+-+.+|..++ +..||.
T Consensus 169 --~~~~~~~YsasKaal~~ltk~lA~ela--~~gIrV 201 (294)
T d1w6ua_ 169 --GSGFVVPSASAKAGVEAMSKSLAAEWG--KYGMRF 201 (294)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred --cccccchHHHHHHHHHHHHHHHHHHHh--HhCeEE
Confidence 122111355565555677777888876 556764
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.61 E-value=0.00037 Score=59.90 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=88.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC------CCcceEEeCC----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP------LLKGVVATTD---- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~------~~~~v~~~~~---- 74 (320)
.+.+.||||++.||.+++..|++.|. .|++.|+++ ++++....++.....+ ...+++...+
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~ 74 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEGA-------QVTITGRNE--DRLEETKQQILKAGVPAEKINAVVADVTEASGQDDI 74 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHH
Confidence 35889999999999999999999997 899999874 5565555555443211 0112211111
Q ss_pred ---hhhhcCCCcEEEEeCCCCCCCC-----CC---HHHHHHhhHHHHH----HHHHHHhhhcCCCeEEEEEcCcchhhHH
Q 020875 75 ---AVEACTGVNIAVMVGGFPRKEG-----ME---RKDVMSKNVSIYK----AQASALEQHAAPNCKVLVVANPANTNAL 139 (320)
Q Consensus 75 ---~~~al~~aDvVi~~ag~~~~~~-----~~---r~~~~~~n~~~~~----~i~~~i~~~~~~~~~viv~snP~~~~~~ 139 (320)
..+.+-..|++|+.||.....+ .+ .+..+..|+.... ..++.+.+. +..++++.|.-..
T Consensus 75 ~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~ii~~ss~~~---- 148 (274)
T d1xhla_ 75 INTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT--KGEIVNVSSIVAG---- 148 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECCGGGS----
T ss_pred HHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccc--ccccccchhhhhc----
Confidence 1223446899999998643211 12 2334566665444 445555543 3455555442211
Q ss_pred HHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 140 ILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 140 ~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
..+.|..-.|+.++-.-..|-+.+|..++ +..|+
T Consensus 149 -----~~~~~~~~~Y~asKaal~~ltk~lA~ela--~~gIr 182 (274)
T d1xhla_ 149 -----PQAHSGYPYYACAKAALDQYTRCTAIDLI--QHGVR 182 (274)
T ss_dssp -----SSCCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred -----cccCCCCceehhhhhHHHHHHHHHHHHHh--HhCCc
Confidence 01222222455555555667777887775 45565
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.60 E-value=8.9e-05 Score=63.43 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=87.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCC-------
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTD------- 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~------- 74 (320)
.++++||||++.||.+++..|++.|. .|++.|+++ ++++....++...... ...+++...+
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga-------~V~~~~r~~--~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 78 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGA-------VIHTCARNE--YELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQT 78 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHH
Confidence 46899999999999999999999997 899999874 4555444444432211 1112211111
Q ss_pred hhhhcC-CCcEEEEeCCCCCCC---CCC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 75 AVEACT-GVNIAVMVGGFPRKE---GME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 75 ~~~al~-~aDvVi~~ag~~~~~---~~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
..+.+. ..|++|+.||..... ..+ .+..+..|+... +...+.+++.. .+.+|++|+-....
T Consensus 79 ~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~------ 150 (259)
T d1xq1a_ 79 VSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVV------ 150 (259)
T ss_dssp HHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC------------
T ss_pred HHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc--cccccccccccccc------
Confidence 122233 479999999875321 122 334566776654 44455555543 46788887543211
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
+.|..-.|+.++---..|-+.+|..++ +..|+
T Consensus 151 ---~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIr 182 (259)
T d1xq1a_ 151 ---SASVGSIYSATKGALNQLARNLACEWA--SDGIR 182 (259)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred ---cccccccccccccchhhhhHHHHHHhc--ccCeE
Confidence 122222466666666667777888765 44565
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.60 E-value=6.6e-05 Score=57.32 Aligned_cols=72 Identities=15% Similarity=0.309 Sum_probs=44.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhh-hcCCCcE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVE-ACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~-al~~aDv 84 (320)
|||.|+| .|.+|+.++..|...|+ +++++|.++ ++++....++ +.. ...++......+.+ .++++|.
T Consensus 1 M~IvI~G-~G~~G~~la~~L~~~g~-------~v~vid~d~--~~~~~~~~~~-~~~-vi~Gd~~~~~~l~~~~i~~a~~ 68 (132)
T d1lssa_ 1 MYIIIAG-IGRVGYTLAKSLSEKGH-------DIVLIDIDK--DICKKASAEI-DAL-VINGDCTKIKTLEDAGIEDADM 68 (132)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHC-SSE-EEESCTTSHHHHHHTTTTTCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-------CcceecCCh--hhhhhhhhhh-hhh-hccCcccchhhhhhcChhhhhh
Confidence 7999999 59999999999999887 899999874 4443222221 110 00011111111222 2578999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
++.+.
T Consensus 69 vv~~t 73 (132)
T d1lssa_ 69 YIAVT 73 (132)
T ss_dssp EEECC
T ss_pred hcccC
Confidence 88864
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.58 E-value=3.9e-05 Score=61.60 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=37.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV 59 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~ 59 (320)
|||+|+||+|.+|++++..|+..|+ +|+++++++ ++++....++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~-------~V~l~~R~~--e~~~~l~~~i~ 45 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH-------EIVVGSRRE--EKAEAKAAEYR 45 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-------EEEEEESSH--HHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHH
Confidence 7999997789999999999999998 899999874 55655554444
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=97.58 E-value=3.5e-05 Score=65.76 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=90.1
Q ss_pred CCEEEEEcCCC--hhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC---CCCcceEEeCC-----
Q 020875 5 PVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF---PLLKGVVATTD----- 74 (320)
Q Consensus 5 ~~kI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~---~~~~~v~~~~~----- 74 (320)
.++++||||+| -+|.+++..|++.|. .|++.++++ ++.....++..... .+..++....+
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga-------~V~i~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGA-------EVALSYQAE---RLRPEAEKLAEALGGALLFRADVTQDEELDALF 77 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTC-------EEEEEESSG---GGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCC-------EEEEEeCcH---HHHHHHHHhhhccCcccccccccCCHHHHHHHH
Confidence 46899999887 599999999999997 899999864 22222222221110 01111111111
Q ss_pred --hhhhcCCCcEEEEeCCCCCCC-------CCCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 75 --AVEACTGVNIAVMVGGFPRKE-------GMER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 75 --~~~al~~aDvVi~~ag~~~~~-------~~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
..+.+...|++|+.||..... ..+. ...+..|+.....+++.....-.+.+.+|++|+....
T Consensus 78 ~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~------ 151 (256)
T d1ulua_ 78 AGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE------ 151 (256)
T ss_dssp HHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT------
T ss_pred HHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc------
Confidence 223345789999999864210 1122 2346677777777776665543234677777754321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.+.|..-.|+.++-.-..+-+.+|..++ +..|+
T Consensus 152 ---~~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIr 184 (256)
T d1ulua_ 152 ---KVVPKYNVMAIAKAALEASVRYLAYELG--PKGVR 184 (256)
T ss_dssp ---SBCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCE
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCCE
Confidence 1233222456666666677777888876 45666
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=97.57 E-value=0.00017 Score=61.48 Aligned_cols=164 Identities=11% Similarity=0.026 Sum_probs=89.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cC---CCCcceEEeCC-----
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AF---PLLKGVVATTD----- 74 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~---~~~~~v~~~~~----- 74 (320)
+.++++||||++.+|.+++..|++.|. .|++.|+++ +++.....++... .. .+..+++...+
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga-------~V~i~~r~~--~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~ 78 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-------NVAVIYRSA--ADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTI 78 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE-------EEEEEESSC--TTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHH
Confidence 456889999999999999999999997 899999975 3333333333221 10 11112221111
Q ss_pred --hhhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 75 --AVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 75 --~~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
..+.+...|++|+.||...... .+ .++.+..|+... +.+++.+.+.. ....+++.+......... .
T Consensus 79 ~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~~g~i~~~~s~~~~~~~~-~ 156 (260)
T d1h5qa_ 79 QQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQ-QKGSIVVTSSMSSQIINQ-S 156 (260)
T ss_dssp HHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGTSCCE-E
T ss_pred HHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccc-cceEEEEeeccccccccc-c
Confidence 2233457899999998753211 12 334566776544 44556665544 445566555432110000 0
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
. ..+.+..-.|+.++---..+-+.+|..++ +..|+.
T Consensus 157 ~-~~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrv 192 (260)
T d1h5qa_ 157 S-LNGSLTQVFYNSSKAACSNLVKGLAAEWA--SAGIRV 192 (260)
T ss_dssp E-TTEECSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred c-cccCccccchhhhhhhHHHHHHHHHHHhc--hhCeEE
Confidence 0 00001111344555555667777777765 455663
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00044 Score=59.16 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=87.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCC----cceEEe-------C
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL----KGVVAT-------T 73 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~----~~v~~~-------~ 73 (320)
.++++||||++.+|.+++..|++.|. .|++.++++ ++++....++........ .+.... .
T Consensus 14 GK~alITGassGIG~aiA~~la~~G~-------~Vil~~r~~--~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 84 (269)
T d1xu9a_ 14 GKKVIVTGASKGIGREMAYHLAKMGA-------HVVVTARSK--ETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVA 84 (269)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHH
Confidence 36899999999999999999999997 899999974 555544444332211100 000000 0
Q ss_pred ChhhhcCCCcEEEEeCCCCCCC---CCCH---HHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHH
Q 020875 74 DAVEACTGVNIAVMVGGFPRKE---GMER---KDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKE 143 (320)
Q Consensus 74 ~~~~al~~aDvVi~~ag~~~~~---~~~r---~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~ 143 (320)
...+.+...|++++.||..... ..+. ...+..|+. .++.+.+.+++. ++.+|++++....
T Consensus 85 ~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~---~G~ii~isS~~~~------- 154 (269)
T d1xu9a_ 85 QAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS---NGSIVVVSSLAGK------- 154 (269)
T ss_dssp HHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEEEGGGT-------
T ss_pred HHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc---CCcceEeccchhc-------
Confidence 1222345789999988764321 1222 234555543 455556666543 3567777654321
Q ss_pred HCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 144 ~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
.++|..-.|+.++---..|-+.++..+......|+
T Consensus 155 --~~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~ 189 (269)
T d1xu9a_ 155 --VAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVS 189 (269)
T ss_dssp --SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEE
Confidence 23333235666665555666666666543333455
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.50 E-value=0.00053 Score=58.48 Aligned_cols=154 Identities=13% Similarity=0.169 Sum_probs=87.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC------CCcceEEeCC-----
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP------LLKGVVATTD----- 74 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~------~~~~v~~~~~----- 74 (320)
+.++||||++.+|.+++..|++.|. +|++.|+++ ++++....++...... ...+++...+
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga-------~V~~~~r~~--~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~ 76 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGA-------KVTITGRHA--ERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEIL 76 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHH
Confidence 4678889999999999999999997 899999874 5555555555433211 1112211111
Q ss_pred --hhhhcCCCcEEEEeCCCCCCC-------CCC---HHHHHHhhHHHH----HHHHHHHhhhcCCCeEEEEEcCcchhhH
Q 020875 75 --AVEACTGVNIAVMVGGFPRKE-------GME---RKDVMSKNVSIY----KAQASALEQHAAPNCKVLVVANPANTNA 138 (320)
Q Consensus 75 --~~~al~~aDvVi~~ag~~~~~-------~~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~snP~~~~~ 138 (320)
..+.+...|++|+.||..... ..+ .+..+..|+... +..++.+++. . ..+|++++....
T Consensus 77 ~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~--~-g~iI~~~S~~~~-- 151 (264)
T d1spxa_ 77 STTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST--K-GEIVNISSIASG-- 151 (264)
T ss_dssp HHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEECCTTSS--
T ss_pred HHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc--c-Ccceeeeeeccc--
Confidence 122345789999999864211 112 234566666544 5555555544 2 345555543211
Q ss_pred HHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 139 LILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
..+.|..-.|+.++-.-..|-+.+|..++ +..|+.
T Consensus 152 ------~~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrV 186 (264)
T d1spxa_ 152 ------LHATPDFPYYSIAKAAIDQYTRNTAIDLI--QHGIRV 186 (264)
T ss_dssp ------SSCCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEE
T ss_pred ------cccCCCchhhhhhhhhHHHHHHHHHHHhc--ccCeEE
Confidence 01222222466666666677777888775 455663
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.47 E-value=0.00019 Score=57.73 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=46.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccC--CCCcceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF--PLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~--~~~~~v~~~~~~~~al~~a 82 (320)
|+||+|+||+|++|.-++..|.....+ ++.-+-.... +...|....-.+... .....+....+......++
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~------ei~~l~~~s~-~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHM------TITALTVSAQ-SNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADV 73 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTE------EEEEEEEETT-CTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTC
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCC------ceEeeEeecc-cccccccccccccccccccccccccchhhhhhhccc
Confidence 689999999999999999999887543 6654432111 111222221112111 1122334444555567899
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+||++.
T Consensus 74 dvvf~al 80 (179)
T d2g17a1 74 DVVFLAT 80 (179)
T ss_dssp CEEEECS
T ss_pred ceeeccc
Confidence 9999975
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.41 E-value=8.6e-05 Score=60.15 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=44.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHH-HHhcccCCCCcceEEeCChhhhcCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKM-ELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~-dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
.++.||+|+||+|++|+-++..|.+...+ ++..+..++. .|... +..... .............+.+++
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~------ei~~l~S~~~----aG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 71 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQF------RIKVMTADRK----AGEQFGSVFPHL-ITQDLPNLVAVKDADFSN 71 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSE------EEEEEECSTT----TTSCHHHHCGGG-TTSCCCCCBCGGGCCGGG
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCc------eEEEEecccc----CCCccccccccc-cccccccchhhhhhhhcc
Confidence 46789999999999999999998876543 7766653321 12111 111110 001111111223455678
Q ss_pred CcEEEEeC
Q 020875 82 VNIAVMVG 89 (320)
Q Consensus 82 aDvVi~~a 89 (320)
+|+||.+.
T Consensus 72 ~Dvvf~al 79 (183)
T d2cvoa1 72 VDAVFCCL 79 (183)
T ss_dssp CSEEEECC
T ss_pred cceeeecc
Confidence 99999875
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.001 Score=55.99 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=90.5
Q ss_pred CCEEEEEcCCC--hhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEE-------e
Q 020875 5 PVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVA-------T 72 (320)
Q Consensus 5 ~~kI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~-------~ 72 (320)
.++++||||+| -+|.+++..|++.|. +|++.++++. +.....++....... ..++.. .
T Consensus 5 gK~~lITGass~~GIG~aiA~~l~~~G~-------~V~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (258)
T d1qsga_ 5 GKRILVTGVASKLSIAYGIAQAMHREGA-------ELAFTYQNDK---LKGRVEEFAAQLGSDIVLQCDVAEDASIDTMF 74 (258)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTC-------EEEEEESSTT---THHHHHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCchhHHHHHHHHHHHcCC-------EEEEEeCCHH---HHHHHHHHHhhcCCcceeecccchHHHHHHHH
Confidence 46899999887 689999999999997 8999998742 222222332221110 000000 0
Q ss_pred CChhhhcCCCcEEEEeCCCCCCCCC--------CH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHH
Q 020875 73 TDAVEACTGVNIAVMVGGFPRKEGM--------ER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALIL 141 (320)
Q Consensus 73 ~~~~~al~~aDvVi~~ag~~~~~~~--------~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~ 141 (320)
....+.....|++|+.++....... .. ...+..|......+.+.+...-.+...++++|....
T Consensus 75 ~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~------ 148 (258)
T d1qsga_ 75 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGA------ 148 (258)
T ss_dssp HHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGG------
T ss_pred HHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhh------
Confidence 0122233456899998876432111 11 123445566666666666665433445666665431
Q ss_pred HHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 142 KEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 142 ~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
..+.|..-.|+.++---..+-+.+|+.++ +..|+.-
T Consensus 149 ---~~~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN 184 (258)
T d1qsga_ 149 ---ERAIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVN 184 (258)
T ss_dssp ---TSBCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEE
T ss_pred ---ccCCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceee
Confidence 12333333567777777788888999987 5678743
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.41 E-value=0.00071 Score=53.97 Aligned_cols=70 Identities=7% Similarity=0.097 Sum_probs=47.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcc--eEEeCChhhhcCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKG--VVATTDAVEACTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~--v~~~~~~~~al~~aD 83 (320)
.+|++|| .|.+|++++..|+..|+ +|+.+|+++ ++++ ++.......... .....+..+++.++|
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 68 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGF-------VVCAFNRTV--SKVD----DFLANEAKGTKVLGAHSLEEMVSKLKKPR 68 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSST--HHHH----HHHHTTTTTSSCEECSSHHHHHHHBCSSC
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHH----HHHHhccccccccchhhhhhhhhhhcccc
Confidence 4799999 79999999999999997 799999974 3333 232221111101 111224567788999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
.++.+.
T Consensus 69 ~ii~~~ 74 (176)
T d2pgda2 69 RIILLV 74 (176)
T ss_dssp EEEECS
T ss_pred eEEEec
Confidence 999874
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=97.40 E-value=0.00024 Score=56.86 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=46.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC---ChhhhcCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT---DAVEACTG 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~---~~~~al~~ 81 (320)
.|||+||| .|.+|++++..|++.|+ +|..||+++ ++++.....- ............. .....+..
T Consensus 1 ~MkIGvIG-lG~MG~~ma~~L~~~G~-------~V~~~dr~~--~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 68 (178)
T d1pgja2 1 SMDVGVVG-LGVMGANLALNIAEKGF-------KVAVFNRTY--SKSEEFMKAN--ASAPFAGNLKAFETMEAFAASLKK 68 (178)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSH--HHHHHHHHHT--TTSTTGGGEEECSCHHHHHHHBCS
T ss_pred CCEEEEEe-ehHHHHHHHHHHHHCCC-------eEEEEECCH--HHHHHHHHcC--CccccccchhhhhhhhHHHHhccc
Confidence 47999999 79999999999999997 899999874 4433222211 1111122233222 23445667
Q ss_pred CcEEEEeC
Q 020875 82 VNIAVMVG 89 (320)
Q Consensus 82 aDvVi~~a 89 (320)
++.++...
T Consensus 69 ~~~~~~~~ 76 (178)
T d1pgja2 69 PRKALILV 76 (178)
T ss_dssp SCEEEECC
T ss_pred ceEEEEee
Confidence 77777654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00042 Score=59.37 Aligned_cols=120 Identities=18% Similarity=0.106 Sum_probs=75.6
Q ss_pred CEE-EEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEeC-------
Q 020875 6 VRV-LVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVATT------- 73 (320)
Q Consensus 6 ~kI-~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~~------- 73 (320)
++| +||||++-||..++..|++. |. .|++.++++ ++++....++....... ..++....
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~ 73 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSG-------DVVLTARDV--TRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRD 73 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSS-------EEEEEESSH--HHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHH
Confidence 577 57899999999999999875 65 899999974 55655555554332111 11221111
Q ss_pred ChhhhcCCCcEEEEeCCCCCCCC---CC---HHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcc
Q 020875 74 DAVEACTGVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPA 134 (320)
Q Consensus 74 ~~~~al~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~ 134 (320)
...+.+...|++|+.||+..... .+ ....+..|+.....+.+.+...-.+.+++|++++-.
T Consensus 74 ~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~ 140 (275)
T d1wmaa1 74 FLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIM 140 (275)
T ss_dssp HHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH
T ss_pred HHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 12233457899999999743211 11 223567888877777777766543457888888643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.24 E-value=0.00052 Score=52.01 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=45.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCChhhh-cCCCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDAVEA-CTGVN 83 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~~~a-l~~aD 83 (320)
+|+.|+| .|.+|+.++..|.+.|+ +++++|.++ ++++ ++.+.... ...+.+....+.++ +.+||
T Consensus 1 k~~iIiG-~G~~G~~la~~L~~~g~-------~vvvid~d~--~~~~----~~~~~~~~~~~gd~~~~~~l~~a~i~~a~ 66 (134)
T d2hmva1 1 KQFAVIG-LGRFGGSIVKELHRMGH-------EVLAVDINE--EKVN----AYASYATHAVIANATEENELLSLGIRNFE 66 (134)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTC-------CCEEEESCH--HHHH----HTTTTCSEEEECCTTCTTHHHHHTGGGCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEecCcH--HHHH----HHHHhCCcceeeecccchhhhccCCcccc
Confidence 4789999 59999999999999997 799999874 3332 22222111 11122112223333 67899
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
.||.+.+
T Consensus 67 ~vi~~~~ 73 (134)
T d2hmva1 67 YVIVAIG 73 (134)
T ss_dssp EEEECCC
T ss_pred EEEEEcC
Confidence 9888753
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.22 E-value=0.00053 Score=54.01 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+..||+|+| +|.+|..++..|...|.- ++.++.+.. +++......+.. ......++.+++.++|
T Consensus 23 ~~~~ilviG-aG~~g~~v~~~L~~~g~~------~i~v~nRt~--~ka~~l~~~~~~-------~~~~~~~~~~~l~~~D 86 (159)
T d1gpja2 23 HDKTVLVVG-AGEMGKTVAKSLVDRGVR------AVLVANRTY--ERAVELARDLGG-------EAVRFDELVDHLARSD 86 (159)
T ss_dssp TTCEEEEES-CCHHHHHHHHHHHHHCCS------EEEEECSSH--HHHHHHHHHHTC-------EECCGGGHHHHHHTCS
T ss_pred ccCeEEEEC-CCHHHHHHHHHHHhcCCc------EEEEEcCcH--HHHHHHHHhhhc-------ccccchhHHHHhccCC
Confidence 457999999 599999999999988862 788998863 454444333321 1111246788899999
Q ss_pred EEEEeCCCC
Q 020875 84 IAVMVGGFP 92 (320)
Q Consensus 84 vVi~~ag~~ 92 (320)
+||.+.+.+
T Consensus 87 ivi~atss~ 95 (159)
T d1gpja2 87 VVVSATAAP 95 (159)
T ss_dssp EEEECCSSS
T ss_pred EEEEecCCC
Confidence 999987654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.19 E-value=0.00012 Score=58.16 Aligned_cols=74 Identities=8% Similarity=0.064 Sum_probs=46.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.+||+|+| +|.+|++++..|.+.|+ +|.++|++. +++......+..... ............+.+...|.
T Consensus 2 ~K~IliiG-aG~~G~~~a~~L~~~g~-------~V~v~dr~~--~~a~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~ 70 (182)
T d1e5qa1 2 TKSVLMLG-SGFVTRPTLDVLTDSGI-------KVTVACRTL--ESAKKLSAGVQHSTP-ISLDVNDDAALDAEVAKHDL 70 (182)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHTTTC-------EEEEEESCH--HHHHHHHTTCTTEEE-EECCTTCHHHHHHHHTTSSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCh--HHHHHHHhccccccc-ccccccchhhhHhhhhccce
Confidence 36999999 59999999999999997 899999974 444322221111100 00011111234556788898
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
++.+.
T Consensus 71 ~i~~~ 75 (182)
T d1e5qa1 71 VISLI 75 (182)
T ss_dssp EEECS
T ss_pred eEeec
Confidence 88754
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.0011 Score=55.72 Aligned_cols=158 Identities=13% Similarity=0.076 Sum_probs=89.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEe----CChh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVAT----TDAV 76 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~----~~~~ 76 (320)
+.+.+.||||++.+|.+++..|++.|. .|++.|+++ ++++....++....... ..+.... ....
T Consensus 4 kGKvalITGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (248)
T d2o23a1 4 KGLVAVITGGASGLGLATAERLVGQGA-------SAVLLDLPN--SGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAK 74 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-------EEEEEECTT--SSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 345678999999999999999999997 899999875 44554444443221110 0010000 0122
Q ss_pred hhcCCCcEEEEeCCCCCC-------CC--C---CHHHHHHhhHHHHHHHHHHHhhh----c----CCCeEEEEEcCcchh
Q 020875 77 EACTGVNIAVMVGGFPRK-------EG--M---ERKDVMSKNVSIYKAQASALEQH----A----APNCKVLVVANPANT 136 (320)
Q Consensus 77 ~al~~aDvVi~~ag~~~~-------~~--~---~r~~~~~~n~~~~~~i~~~i~~~----~----~~~~~viv~snP~~~ 136 (320)
......|..++.++.... +. . .....+..|+.....+.+.+.++ . ...+.+|++|+-...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~ 154 (248)
T d2o23a1 75 GKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF 154 (248)
T ss_dssp HHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred cccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhc
Confidence 334567888877654221 11 1 13345667766555555544322 1 124567777765321
Q ss_pred hHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
. +.|..-.|+.++---..|-+.+|+.++ +..|+.
T Consensus 155 -------~--~~~~~~~Y~asKaal~~lt~~la~e~~--~~gIrv 188 (248)
T d2o23a1 155 -------E--GQVGQAAYSASKGGIVGMTLPIARDLA--PIGIRV 188 (248)
T ss_dssp -------H--CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred -------c--CCCCchHHHHHHHHHHHHHHHHHHHhc--ccCcce
Confidence 1 223222466666666678888888876 456764
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=97.18 E-value=0.00096 Score=56.77 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=80.4
Q ss_pred CCEEEEEcCCC--hhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC---CcceEEe-------
Q 020875 5 PVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL---LKGVVAT------- 72 (320)
Q Consensus 5 ~~kI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~---~~~v~~~------- 72 (320)
.++++||||+| .||.+++..|++.|. +|++.|++++ +.....++....... ..++...
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga-------~V~i~~r~~~---~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~ 74 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGA-------TLAFTYLNES---LEKRVRPIAQELNSPYVYELDVSKEEHFKSLY 74 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTC-------EEEEEESSTT---THHHHHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCC-------EEEEEeCCHH---HHHHHHHHHhhCCceeEeeecccchhhHHHHH
Confidence 46899999887 599999999999997 8999999742 222223333221110 0111111
Q ss_pred CChhhhcCCCcEEEEeCCCCCCC---C----CCHHHH---HHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 73 TDAVEACTGVNIAVMVGGFPRKE---G----MERKDV---MSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 73 ~~~~~al~~aDvVi~~ag~~~~~---~----~~r~~~---~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
....+.+...|++|+.+|..... + ...... ...+............+...+...+++.+... .
T Consensus 75 ~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~-~------ 147 (274)
T d2pd4a1 75 NSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLG-S------ 147 (274)
T ss_dssp HHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGG-G------
T ss_pred HHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeecccc-c------
Confidence 12234456789999998864321 1 111111 12222234444555544442333344443322 1
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
....+..-.++.++--...+-+.+|+.++ +..|+
T Consensus 148 --~~~~~~~~~y~asK~al~~ltr~lA~e~~--~~GIr 181 (274)
T d2pd4a1 148 --TKYMAHYNVMGLAKAALESAVRYLAVDLG--KHHIR 181 (274)
T ss_dssp --TSBCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTCE
T ss_pred --ccccccchhhhHHHHHHHHHHHhhHHHhc--CcCce
Confidence 01122112345555555666677777765 44555
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=97.15 E-value=0.00039 Score=59.03 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCh--hHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQ--IGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~--vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.++++||||+|. +|.+++..|++.|. +|++.++++
T Consensus 6 gK~~lItGaag~~GIG~aiA~~la~~Ga-------~Vil~~~~~ 42 (268)
T d2h7ma1 6 GKRILVSGIITDSSIAFHIARVAQEQGA-------QLVLTGFDR 42 (268)
T ss_dssp TCEEEECCCSSTTCHHHHHHHHHHHTTC-------EEEEEECSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHcCC-------EEEEEeCCh
Confidence 358999997764 99999999999997 899999864
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.14 E-value=0.00032 Score=56.24 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=43.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|+||+|+||+|++|.-++..|.+...+ ++..+-.++ ..|...+-.+........+. ..+..+..+++|+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~------ei~~l~s~~----~aG~~i~~~~p~~~~~~~~~-~~~~~~~~~~~dv 69 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEA------KITYLSSRT----YAGKKLEEIFPSTLENSILS-EFDPEKVSKNCDV 69 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTE------EEEEEECST----TTTSBHHHHCGGGCCCCBCB-CCCHHHHHHHCSE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCc------eEEEeeccc----cCCCcccccCchhhcccccc-ccCHhHhccccce
Confidence 679999999999999999988876543 666554322 12222211111110011111 1244455578999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
||.+..
T Consensus 70 vf~a~p 75 (176)
T d1vkna1 70 LFTALP 75 (176)
T ss_dssp EEECCS
T ss_pred EEEccc
Confidence 998753
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.11 E-value=0.001 Score=56.25 Aligned_cols=149 Identities=9% Similarity=0.056 Sum_probs=86.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCC-------hhhhc
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD-------AVEAC 79 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~-------~~~al 79 (320)
..+||||++.+|..++..|++.|. .|++.|++. ++++... .+.... ...++....+ ..+.+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-------~V~i~~r~~--~~~~~~~-~~~~~~--~~~dv~~~~~~~~~~~~~~~~~ 69 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-------TVACHDESF--KQKDELE-AFAETY--PQLKPMSEQEPAELIEAVTSAY 69 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-------EEEECCGGG--GSHHHHH-HHHHHC--TTSEECCCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHH-hhhCcE--EEeccCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999997 899999864 2222111 111111 0112222222 23334
Q ss_pred CCCcEEEEeCCCCC--CCC--CCHH---HHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCC
Q 020875 80 TGVNIAVMVGGFPR--KEG--MERK---DVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSI 148 (320)
Q Consensus 80 ~~aDvVi~~ag~~~--~~~--~~r~---~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~ 148 (320)
-..|++|+.||... .+- .+.+ ..+..|+. .++.+++.+++.. .+.+|++|+-... .+.
T Consensus 70 G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~--~G~IV~isS~~~~---------~~~ 138 (252)
T d1zmta1 70 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPF---------GPW 138 (252)
T ss_dssp SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTT---------SCC
T ss_pred CCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc--cceeecccccccc---------ccc
Confidence 57899999888642 221 2222 34455543 4556666676653 4678888764321 122
Q ss_pred CCCcEEEeehhhHHHHHHHHHHHcCCCCCCee
Q 020875 149 PAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180 (320)
Q Consensus 149 ~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~ 180 (320)
|..-.|+.++---..|-+.+|+.++ +..|+
T Consensus 139 ~~~~~Y~asKaal~~lt~~lA~ela--~~gIr 168 (252)
T d1zmta1 139 KELSTYTSARAGACTLANALSKELG--EYNIP 168 (252)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHG--GGTCC
T ss_pred ccccccccccccHHHHHHHHHHHhc--ccCcE
Confidence 2222466666666677777888876 34454
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=97.04 E-value=0.0011 Score=55.93 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=70.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCc-cchhHHHHHHHhcccCC---CCcceEEeCC---hhhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPA-AEALNGVKMELVDAAFP---LLKGVVATTD---AVEA 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~-~~~~~~~~~dl~~~~~~---~~~~v~~~~~---~~~a 78 (320)
..++||||+|.||..++..|+++|.. .|+|+.++.. .+.++....++...... ...++....+ ..+.
T Consensus 10 gt~lVTGgs~GIG~a~a~~la~~Ga~------~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~ 83 (259)
T d2fr1a1 10 GTVLVTGGTGGVGGQIARWLARRGAP------HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGG 83 (259)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHTCS------EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCC------EEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcc
Confidence 58999999999999999999999862 6888876521 12233333344322110 0111111111 1112
Q ss_pred cC---CCcEEEEeCCCCCCCC---CCH---HHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 79 CT---GVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 79 l~---~aDvVi~~ag~~~~~~---~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
+. ..|.||+.+|...... .+. ...+..|+.....+.+.+.... ...+|++|+
T Consensus 84 i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~--~~~iv~~SS 144 (259)
T d2fr1a1 84 IGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD--LTAFVLFSS 144 (259)
T ss_dssp SCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC--CSEEEEEEE
T ss_pred ccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccC--CceEeeecc
Confidence 22 4789999998754322 222 2346678888888888776653 356677764
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.96 E-value=0.00074 Score=56.16 Aligned_cols=153 Identities=14% Similarity=0.034 Sum_probs=78.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
++++||||++.||.+++..|++.|. +|++.|++++...+.....|+.+... ..............|.+
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga-------~V~i~~~~~~~~~~~~~~~d~~~~~~-----~~~~~~~~~~~~~~~~~ 69 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGY-------RVVVLDLRREGEDLIYVEGDVTREED-----VRRAVARAQEEAPLFAV 69 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC-------EEEEEESSCCSSSSEEEECCTTCHHH-----HHHHHHHHHHHSCEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCcccccceEeeccccchhh-----hHHHHHhhhccccccch
Confidence 4788999999999999999999997 89999987532222111122211110 00000111122233444
Q ss_pred EEeCCCCCC------CC----CCHHHHHHhhHHHHHHHHHHHhhh----c----CCCeEEEEEcCcchhhHHHHHHHCCC
Q 020875 86 VMVGGFPRK------EG----MERKDVMSKNVSIYKAQASALEQH----A----APNCKVLVVANPANTNALILKEFAPS 147 (320)
Q Consensus 86 i~~ag~~~~------~~----~~r~~~~~~n~~~~~~i~~~i~~~----~----~~~~~viv~snP~~~~~~~~~~~~~~ 147 (320)
+..++.... .. ......++.|......+.+.+... . ...+.+|++|+-... .+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~---------~~ 140 (241)
T d1uaya_ 70 VSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAF---------EG 140 (241)
T ss_dssp EECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHH---------HC
T ss_pred hhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhc---------cC
Confidence 444332110 00 112344566655555444443222 1 124678888764321 12
Q ss_pred CCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeee
Q 020875 148 IPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181 (320)
Q Consensus 148 ~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~ 181 (320)
.|..-.|+.++---..|-+.+|..++ +..|+.
T Consensus 141 ~~~~~~Y~asKaal~~lt~~lA~ela--~~gIrV 172 (241)
T d1uaya_ 141 QIGQAAYAASKGGVVALTLPAARELA--GWGIRV 172 (241)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHh--hcCCce
Confidence 22222456666556667777888776 456763
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.91 E-value=0.00029 Score=59.57 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=85.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC----CCcceEEeCCh-----
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP----LLKGVVATTDA----- 75 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~----~~~~v~~~~~~----- 75 (320)
++.|+||||++-+|..++..|+.+|.. ..|++..+++ ++++. +...... ...+++...+.
T Consensus 3 ~KtilITGassGIG~a~a~~la~~G~~-----~~Vi~~~R~~--~~~~~----l~~~~~~~~~~~~~Dvs~~~~v~~~~~ 71 (250)
T d1yo6a1 3 PGSVVVTGANRGIGLGLVQQLVKDKNI-----RHIIATARDV--EKATE----LKSIKDSRVHVLPLTVTCDKSLDTFVS 71 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTC-----CEEEEEESSG--GGCHH----HHTCCCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCC-----CEEEEEeCCH--HHHHH----HHHhhCCceEEEEEecCCHHHHHHHHH
Confidence 458999999999999999999998852 1577777764 44432 2211100 01111111111
Q ss_pred --hhhcC--CCcEEEEeCCCCCC--C--CCC---HHHHHHhhHHHHHH----HHHHHhhhcC---------CCeEEEEEc
Q 020875 76 --VEACT--GVNIAVMVGGFPRK--E--GME---RKDVMSKNVSIYKA----QASALEQHAA---------PNCKVLVVA 131 (320)
Q Consensus 76 --~~al~--~aDvVi~~ag~~~~--~--~~~---r~~~~~~n~~~~~~----i~~~i~~~~~---------~~~~viv~s 131 (320)
.+.+. +.|++|+.||+... + ..+ ..+.+..|+..... +++.+++... ..+.++.++
T Consensus 72 ~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s 151 (250)
T d1yo6a1 72 KVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITIS 151 (250)
T ss_dssp HHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEEC
T ss_pred HHHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccc
Confidence 11122 38999999997422 1 122 23456677655444 4555554321 124566666
Q ss_pred CcchhhHHHHHHHCCCCC--CCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 132 NPANTNALILKEFAPSIP--AKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 132 nP~~~~~~~~~~~~~~~~--~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
.....+... ..+.+ +..-|+.++.--..|-+.+|+.|. +..|+..
T Consensus 152 ~~~~~~~~~----~~~~~~~~~~aY~aSKaal~~l~~~la~el~--~~gI~v~ 198 (250)
T d1yo6a1 152 SGLGSITDN----TSGSAQFPVLAYRMSKAAINMFGRTLAVDLK--DDNVLVV 198 (250)
T ss_dssp CGGGCSTTC----CSTTSSSCBHHHHHHHHHHHHHHHHHHHHTG--GGTCEEE
T ss_pred cccccccCC----cccccchhHHHHHHHHHHHHHHHHHHHHHhc--ccCeEEE
Confidence 443222111 01111 111266666666677778888864 5567643
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.0015 Score=51.41 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEE-EEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
.++||+|.||+|.+|+.++..+.+..-+ ++ ..+|+... ..+ ..|+..........+..+.+..+.++++
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~------~lv~~~~~~~~-~~~---g~d~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGV------QLGAALEREGS-SLL---GSDAGELAGAGKTGVTVQSSLDAVKDDF 72 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTE------ECCCEECCTTC-TTC---SCCTTCSSSSSCCSCCEESCSTTTTTSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCC------EEEEEEecccc-hhc---cchhhhhhccccCCceeeccHHHHhccc
Confidence 4689999999999999999988876432 44 35665421 111 1222222111123455666777888999
Q ss_pred cEEEEe
Q 020875 83 NIAVMV 88 (320)
Q Consensus 83 DvVi~~ 88 (320)
|+||=.
T Consensus 73 DViIDF 78 (162)
T d1diha1 73 DVFIDF 78 (162)
T ss_dssp SEEEEC
T ss_pred ceEEEe
Confidence 988643
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.84 E-value=0.0024 Score=49.63 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=39.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
.||++|| .|.+|++++.+|++.++ .+ .+++.. ++......+. . .. ....+.+.++|++
T Consensus 1 ekIg~IG-lG~MG~~ma~~L~~~g~-------~~-~~~~~~--~~~~~~~~~~---~------~~--~~~~~~~~~~~~~ 58 (156)
T d2cvza2 1 EKVAFIG-LGAMGYPMAGHLARRFP-------TL-VWNRTF--EKALRHQEEF---G------SE--AVPLERVAEARVI 58 (156)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHTTSC-------EE-EECSST--HHHHHHHHHH---C------CE--ECCGGGGGGCSEE
T ss_pred CeEEEEe-HHHHHHHHHHHHHhCCC-------EE-EEeCCH--HHHHHHHHHc---C------Cc--ccccccccceeEE
Confidence 3899999 79999999999998775 44 455542 2222211111 1 01 1334667789998
Q ss_pred EEeC
Q 020875 86 VMVG 89 (320)
Q Consensus 86 i~~a 89 (320)
|.+.
T Consensus 59 i~~~ 62 (156)
T d2cvza2 59 FTCL 62 (156)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8763
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.71 E-value=0.0015 Score=51.58 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+|.||+|+| +|.+|..-+..+...|- .|.++|.+. ++++.....+... ..........+.+.+++||
T Consensus 31 ~pa~V~ViG-aGvaG~~A~~~A~~lGA-------~V~~~D~~~--~~l~~l~~~~~~~---~~~~~~~~~~l~~~~~~aD 97 (168)
T d1pjca1 31 KPGKVVILG-GGVVGTEAAKMAVGLGA-------QVQIFDINV--ERLSYLETLFGSR---VELLYSNSAEIETAVAEAD 97 (168)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH--HHHHHHHHHHGGG---SEEEECCHHHHHHHHHTCS
T ss_pred CCcEEEEEC-CChHHHHHHHHHhhCCC-------EEEEEeCcH--HHHHHHHHhhccc---ceeehhhhhhHHHhhccCc
Confidence 578999999 59999999888888775 899999874 4444222211111 0001111224678899999
Q ss_pred EEEEeCCCCCC
Q 020875 84 IAVMVGGFPRK 94 (320)
Q Consensus 84 vVi~~ag~~~~ 94 (320)
+||-++-+|-+
T Consensus 98 ivI~aalipG~ 108 (168)
T d1pjca1 98 LLIGAVLVPGR 108 (168)
T ss_dssp EEEECCCCTTS
T ss_pred EEEEeeecCCc
Confidence 99999987654
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=96.67 E-value=0.00062 Score=52.82 Aligned_cols=62 Identities=6% Similarity=0.001 Sum_probs=35.5
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEEEE
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVM 87 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvVi~ 87 (320)
|++|| +|.+|++++..|.+.+. ...+++++. ++++......... ..+..++++.+|+||+
T Consensus 2 IgfIG-~G~mg~~l~~~L~~~~~-------~~~v~~R~~--~~~~~l~~~~~~~----------~~~~~~~~~~~DiVil 61 (153)
T d2i76a2 2 LNFVG-TGTLTRFFLECLKDRYE-------IGYILSRSI--DRARNLAEVYGGK----------AATLEKHPELNGVVFV 61 (153)
T ss_dssp CEEES-CCHHHHHHHHTTC-----------CCCEECSSH--HHHHHHHHHTCCC----------CCSSCCCCC---CEEE
T ss_pred EEEEe-CcHHHHHHHHHHHhCCC-------EEEEEeCCh--hhhcchhhccccc----------ccchhhhhccCcEEEE
Confidence 68999 69999999987755433 234688753 4444332222111 1245678899999999
Q ss_pred eC
Q 020875 88 VG 89 (320)
Q Consensus 88 ~a 89 (320)
+.
T Consensus 62 ~v 63 (153)
T d2i76a2 62 IV 63 (153)
T ss_dssp CS
T ss_pred ec
Confidence 85
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.013 Score=50.06 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=83.3
Q ss_pred CEEE-EEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEe---cCCc-cchhHHHHHHHhcccCC---CCcceEEeCChhh
Q 020875 6 VRVL-VTGAAGQIGYALVPMIARGVMLGTDQPVILHMLD---IPPA-AEALNGVKMELVDAAFP---LLKGVVATTDAVE 77 (320)
Q Consensus 6 ~kI~-IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D---~~~~-~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~~ 77 (320)
+||+ ||||++.||.+++..|++.|. .+++++ ++.+ .+++......+...... ...+++...+..+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga-------~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~ 74 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPS-------QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAA 74 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTT-------CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCC-------CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhh
Confidence 4665 669999999999999999886 333333 2211 11121111122111100 0011211111111
Q ss_pred h---c--CCCcEEEEeCCCCCCCC---CC---HHHHHHhhHH----HHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHH
Q 020875 78 A---C--TGVNIAVMVGGFPRKEG---ME---RKDVMSKNVS----IYKAQASALEQHAAPNCKVLVVANPANTNALILK 142 (320)
Q Consensus 78 a---l--~~aDvVi~~ag~~~~~~---~~---r~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~ 142 (320)
+ + ...|++|+.+|...... .+ ....++.|+. .++.+++.+++.. .+.+|++|+-...
T Consensus 75 ~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~--~G~Iv~isS~~g~------ 146 (285)
T d1jtva_ 75 ARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGL------ 146 (285)
T ss_dssp HHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGT------
T ss_pred hhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC--CCceEEEechhhc------
Confidence 1 1 35899999998754221 12 3345666755 4556666777654 4677877754321
Q ss_pred HHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeeeE
Q 020875 143 EFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183 (320)
Q Consensus 143 ~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~~ 183 (320)
.+.|..-.|+.++---..|-..+|..+. +..|+.-.
T Consensus 147 ---~~~~~~~~Y~asKaal~~l~~~la~El~--~~gIrVn~ 182 (285)
T d1jtva_ 147 ---MGLPFNDVYCASKFALEGLCESLAVLLL--PFGVHLSL 182 (285)
T ss_dssp ---SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhh--ccCcEEEE
Confidence 1233223566666666677777777764 45666443
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.59 E-value=0.0035 Score=52.51 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=85.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh---cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC---CCcceEEeCChh--
Q 020875 5 PVRVLVTGAAGQIGYALVPMIAR---GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP---LLKGVVATTDAV-- 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~---~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~---~~~~v~~~~~~~-- 76 (320)
|++|+||||++-+|..++..|++ .|. .|++.++++ ++++.. .++...... ...+++...+..
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~-------~V~~~~r~~--~~~~~~-~~~~~~~~~~~~~~~Dvs~~~~v~~~ 71 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQ-------HLFTTCRNR--EQAKEL-EDLAKNHSNIHILEIDLRNFDAYDKL 71 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCS-------EEEEEESCT--TSCHHH-HHHHHHCTTEEEEECCTTCGGGHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHH-HHHHhcCCcEEEEEEEeccHHHHHHH
Confidence 34799999999999999998875 454 899999875 344322 233221111 111222211211
Q ss_pred -h------hcCCCcEEEEeCCCCCCCC----CC---HHHHHHhhHHHHH----HHHHHHhhhc---------CCCeEEEE
Q 020875 77 -E------ACTGVNIAVMVGGFPRKEG----ME---RKDVMSKNVSIYK----AQASALEQHA---------APNCKVLV 129 (320)
Q Consensus 77 -~------al~~aDvVi~~ag~~~~~~----~~---r~~~~~~n~~~~~----~i~~~i~~~~---------~~~~~viv 129 (320)
+ .....|++|+.||+..... .+ ..+.+..|+.... .+.+.+++.. .....+|+
T Consensus 72 ~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~ 151 (248)
T d1snya_ 72 VADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN 151 (248)
T ss_dssp HHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEE
T ss_pred HhhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 1 1235899999998743221 12 2335666765444 4444454431 12356777
Q ss_pred EcCcchhhHHHHHHHCCCCCC-Cc-EEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 130 VANPANTNALILKEFAPSIPA-KN-ITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 130 ~snP~~~~~~~~~~~~~~~~~-~~-i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
+++-...+ .+.+. .. .|+.++..-..|-+.+|..+. +..|+..
T Consensus 152 i~S~~g~~--------~~~~~~~~~~Y~aSKaal~~lt~~la~e~~--~~gI~vn 196 (248)
T d1snya_ 152 MSSILGSI--------QGNTDGGMYAYRTSKSALNAATKSLSVDLY--PQRIMCV 196 (248)
T ss_dssp ECCGGGCS--------TTCCSCCCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEE
T ss_pred cccccccc--------CCCCCCChHHHHHHHHHHHHHHHHHHHHhC--CCCeEEE
Confidence 77644321 11111 11 356666656667677777765 4566643
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.57 E-value=0.0064 Score=51.15 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=83.0
Q ss_pred EE-EEEcCCChhHHHHHHHHHh---cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-----CCcceEEeCChhh
Q 020875 7 RV-LVTGAAGQIGYALVPMIAR---GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-----LLKGVVATTDAVE 77 (320)
Q Consensus 7 kI-~IiGA~G~vG~~la~~L~~---~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-----~~~~v~~~~~~~~ 77 (320)
|| .||||++.+|.+++..|++ .|. .|++.++++ ++++....++...... ...+++...+..+
T Consensus 7 KvalITGas~GIG~aiA~~lA~~~~~G~-------~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~ 77 (259)
T d1oaaa_ 7 AVCVLTGASRGFGRALAPQLARLLSPGS-------VMLVSARSE--SMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQR 77 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTC-------EEEEEESCH--HHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHhcccCCC-------EEEEEECCH--HHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHH
Confidence 55 5569999999999999986 454 899999874 5566555555432110 0112211111111
Q ss_pred h---c--------CCCcEEEEeCCCCCC--C----CCC---HHHHHHhhHHHHHHHHHHHhhhc----CCCeEEEEEcCc
Q 020875 78 A---C--------TGVNIAVMVGGFPRK--E----GME---RKDVMSKNVSIYKAQASALEQHA----APNCKVLVVANP 133 (320)
Q Consensus 78 a---l--------~~aDvVi~~ag~~~~--~----~~~---r~~~~~~n~~~~~~i~~~i~~~~----~~~~~viv~snP 133 (320)
. + -+.|++|+.||.... . ..+ ....+..|+.....+.+.+.++- ...+.+|++|+-
T Consensus 78 l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~ 157 (259)
T d1oaaa_ 78 LLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSL 157 (259)
T ss_dssp HHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCG
T ss_pred HHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccc
Confidence 1 1 245678888876321 1 122 33456778776666655554432 123567777753
Q ss_pred chhhHHHHHHHCCCCCCCcEEEeehhhHHHHHHHHHHHcCCCCCCeeee
Q 020875 134 ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~~~~~a~~l~v~~~~v~~~ 182 (320)
... .+.|..-.|+.++---..|-+.+|.. +..|+.-
T Consensus 158 ~~~---------~~~~~~~~Y~asKaal~~lt~~la~e----~~gIrVn 193 (259)
T d1oaaa_ 158 CAL---------QPYKGWGLYCAGKAARDMLYQVLAAE----EPSVRVL 193 (259)
T ss_dssp GGT---------SCCTTCHHHHHHHHHHHHHHHHHHHH----CTTEEEE
T ss_pred ccc---------CCCccchHHHHHHHHHHHHHHHHHhC----CCCCEEE
Confidence 321 12332224555554445555566665 4578743
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.0021 Score=45.51 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+.+||+|+| .|-.|.+++..|.++|. ++.++|.+...+.. .++.+ ...+.........+.+.|
T Consensus 4 ~~K~v~ViG-lG~sG~s~a~~L~~~g~-------~v~~~D~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~d 66 (93)
T d2jfga1 4 QGKNVVIIG-LGLTGLSCVDFFLARGV-------TPRVMDTRMTPPGL----DKLPE-----AVERHTGSLNDEWLMAAD 66 (93)
T ss_dssp TTCCEEEEC-CSHHHHHHHHHHHHTTC-------CCEEEESSSSCTTG----GGSCT-----TSCEEESBCCHHHHHHCS
T ss_pred CCCEEEEEe-ECHHHHHHHHHHHHCCC-------EEEEeeCCcCchhH----HHHhh-----ccceeecccchhhhccCC
Confidence 346899999 59999999999999987 78999986432211 11111 112222222345678999
Q ss_pred EEEEeCCCCC
Q 020875 84 IAVMVGGFPR 93 (320)
Q Consensus 84 vVi~~ag~~~ 93 (320)
.||.+-|+|.
T Consensus 67 ~vi~SPGi~~ 76 (93)
T d2jfga1 67 LIVASPGIAL 76 (93)
T ss_dssp EEEECTTSCT
T ss_pred EEEECCCCCC
Confidence 9999988764
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=96.53 E-value=0.033 Score=46.29 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=29.3
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+||||++.+|.+++..|++.|. +|++.|++.
T Consensus 4 AlVTGas~GIG~aia~~la~~G~-------~Vvi~~r~~ 35 (266)
T d1mxha_ 4 AVITGGARRIGHSIAVRLHQQGF-------RVVVHYRHS 35 (266)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC
T ss_pred EEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCc
Confidence 57899999999999999999997 899999874
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.52 E-value=0.012 Score=44.04 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=22.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVM 30 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~ 30 (320)
|||+|.|++|.+|+.++..+.+.++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~ 25 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGH 25 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCC
Confidence 7999999999999999888777775
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=96.51 E-value=0.0083 Score=49.97 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=29.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
-|.||||++.+|.+++..|++.|. +|++.|+++
T Consensus 3 VvlITGas~GIG~aiA~~la~~Ga-------~V~~~~~~~ 35 (257)
T d1fjha_ 3 IIVISGCATGIGAATRKVLEAAGH-------QIVGIDIRD 35 (257)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCh
Confidence 468899999999999999999997 899999864
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=96.51 E-value=0.01 Score=50.51 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 3 KEPVRVLVTGAAG--QIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 3 ~~~~kI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
-+.++++||||+| -||..++..|++.|. +|++.+++
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~Ga-------~Vvi~~~~ 43 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGA-------EILVGTWV 43 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTC-------EEEEEEEH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCC-------EEEEEeCc
Confidence 3457999999877 699999999999997 89888875
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.47 E-value=0.0071 Score=46.89 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=43.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
.||+|+||+|++|.-++..|.+..+. ..++.++..++ ..|.. +.+. .............+.++|++
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp----~~~l~~~~s~~----s~G~~--~~~~----~~~~~~~~~~~~~~~~~d~~ 67 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLP----IDKIRYLASAR----SAGKS--LKFK----DQDITIEETTETAFEGVDIA 67 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSC----EEEEEEEECGG----GTTCE--EEET----TEEEEEEECCTTTTTTCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCC----ceEEEEecccc----ccccc--cccc----CCcccccccchhhhhhhhhh
Confidence 48999999999999999888776421 13676665432 12221 1111 11222222334667899999
Q ss_pred EEeCC
Q 020875 86 VMVGG 90 (320)
Q Consensus 86 i~~ag 90 (320)
+++++
T Consensus 68 f~~~~ 72 (154)
T d2gz1a1 68 LFSAG 72 (154)
T ss_dssp EECSC
T ss_pred hhccC
Confidence 99864
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.013 Score=45.97 Aligned_cols=73 Identities=8% Similarity=0.051 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+.++|+|+| +|-.+.++++.|.+.|. +|.+++|+. ++++.....+.+. ..+...........++|
T Consensus 17 ~~k~vlIlG-aGGaarai~~al~~~g~-------~i~I~nRt~--~ka~~l~~~~~~~-----~~~~~~~~~~~~~~~~d 81 (170)
T d1nyta1 17 PGLRILLIG-AGGASRGVLLPLLSLDC-------AVTITNRTV--SRAEELAKLFAHT-----GSIQALSMDELEGHEFD 81 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSH--HHHHHHHHHTGGG-----SSEEECCSGGGTTCCCS
T ss_pred CCCEEEEEC-CcHHHHHHHHHhcccce-------EEEeccchH--HHHHHHHHHHhhc-----ccccccccccccccccc
Confidence 457999999 59999999999998875 799999863 4444433333222 12333222233456799
Q ss_pred EEEEeCCC
Q 020875 84 IAVMVGGF 91 (320)
Q Consensus 84 vVi~~ag~ 91 (320)
+||.+...
T Consensus 82 liIN~Tp~ 89 (170)
T d1nyta1 82 LIINATSS 89 (170)
T ss_dssp EEEECCSC
T ss_pred eeeccccc
Confidence 99998543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.31 E-value=0.016 Score=42.21 Aligned_cols=70 Identities=9% Similarity=0.083 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+..||+|+| +|.+|..-+..|+..|. .|.+++.....+ + ..+.+.. .-.+....-..+.+.+++
T Consensus 11 ~~k~vlVvG-~G~va~~ka~~ll~~ga-------~v~v~~~~~~~~-~----~~~~~~~---~i~~~~~~~~~~dl~~~~ 74 (113)
T d1pjqa1 11 RDRDCLIVG-GGDVAERKARLLLEAGA-------RLTVNALTFIPQ-F----TVWANEG---MLTLVEGPFDETLLDSCW 74 (113)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTB-------EEEEEESSCCHH-H----HHHHTTT---SCEEEESSCCGGGGTTCS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEeccCChH-H----HHHHhcC---CceeeccCCCHHHhCCCc
Confidence 457999999 59999999999999886 788898754211 1 1222111 011112122356789999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+|+.+.
T Consensus 75 lv~~at 80 (113)
T d1pjqa1 75 LAIAAT 80 (113)
T ss_dssp EEEECC
T ss_pred EEeecC
Confidence 998864
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.26 E-value=0.021 Score=45.13 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=44.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc--CC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC--TG 81 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al--~~ 81 (320)
.+||+|+| +|.+|...+..|...+.+ +|+ ++|+++ ++++...... .........+++.+.+ .+
T Consensus 1 kiki~iIG-~G~~g~~~~~~l~~~~~~------~i~ai~d~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~ll~~~~ 66 (184)
T d1ydwa1 1 QIRIGVMG-CADIARKVSRAIHLAPNA------TISGVASRSL--EKAKAFATAN-----NYPESTKIHGSYESLLEDPE 66 (184)
T ss_dssp CEEEEEES-CCTTHHHHHHHHHHCTTE------EEEEEECSSH--HHHHHHHHHT-----TCCTTCEEESSHHHHHHCTT
T ss_pred CeEEEEEc-CCHHHHHHHHHHHhCCCC------EEEEEEeCCc--cccccchhcc-----ccccceeecCcHHHhhhccc
Confidence 36999999 699999998888765332 665 678763 3333222111 1122344556766665 46
Q ss_pred CcEEEEeC
Q 020875 82 VNIAVMVG 89 (320)
Q Consensus 82 aDvVi~~a 89 (320)
.|+|+++.
T Consensus 67 iD~v~I~t 74 (184)
T d1ydwa1 67 IDALYVPL 74 (184)
T ss_dssp CCEEEECC
T ss_pred cceeeecc
Confidence 89999864
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.18 E-value=0.01 Score=46.78 Aligned_cols=73 Identities=8% Similarity=0.042 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+..+|+|+| +|..+.++++.|.+.+- +|.+++|+. ++++..+..+.... ++.........+.++|
T Consensus 17 ~~k~vlIlG-aGGaarai~~aL~~~~~-------~i~I~nR~~--~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~d 81 (171)
T d1p77a1 17 PNQHVLILG-AGGATKGVLLPLLQAQQ-------NIVLANRTF--SKTKELAERFQPYG-----NIQAVSMDSIPLQTYD 81 (171)
T ss_dssp TTCEEEEEC-CSHHHHTTHHHHHHTTC-------EEEEEESSH--HHHHHHHHHHGGGS-----CEEEEEGGGCCCSCCS
T ss_pred CCCEEEEEC-CcHHHHHHHHHHcccCc-------eeeeccchH--HHHHHHHHHHhhcc-----ccchhhhccccccccc
Confidence 356999999 59999999999987542 899999873 55555555554221 2222222234578999
Q ss_pred EEEEeCCC
Q 020875 84 IAVMVGGF 91 (320)
Q Consensus 84 vVi~~ag~ 91 (320)
+||.+...
T Consensus 82 iiIN~tp~ 89 (171)
T d1p77a1 82 LVINATSA 89 (171)
T ss_dssp EEEECCCC
T ss_pred eeeecccc
Confidence 99998644
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=96.16 E-value=0.0048 Score=49.86 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=47.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||+.++..|..-|. +|..+|+....+ . .... .+....++.+.++.||+
T Consensus 49 gktvgIiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~--~--~~~~---------~~~~~~~l~~ll~~sD~ 107 (193)
T d1mx3a1 49 GETLGIIG-LGRVGQAVALRAKAFGF-------NVLFYDPYLSDG--V--ERAL---------GLQRVSTLQDLLFHSDC 107 (193)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECTTSCTT--H--HHHH---------TCEECSSHHHHHHHCSE
T ss_pred CceEEEec-cccccccceeeeecccc-------ceeeccCccccc--c--hhhh---------ccccccchhhccccCCE
Confidence 36999999 79999999999987776 899999864211 1 1111 12223478888999999
Q ss_pred EEEeCCC
Q 020875 85 AVMVGGF 91 (320)
Q Consensus 85 Vi~~ag~ 91 (320)
|++....
T Consensus 108 i~~~~pl 114 (193)
T d1mx3a1 108 VTLHCGL 114 (193)
T ss_dssp EEECCCC
T ss_pred EEEeecc
Confidence 9997643
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=96.15 E-value=0.0076 Score=47.41 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=42.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
+++||+|+| +|++|+.++..|.+..-+ +++ ++|++. +... ...+....+..+...+.
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~------elvav~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~ 59 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQPDM------DLVGIFSRRA--TLDT-------------KTPVFDVADVDKHADDV 59 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTCSSE------EEEEEEESSS--CCSS-------------SSCEEEGGGGGGTTTTC
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhCCCc------EEEEEEeccc--cccc-------------ccccccchhhhhhcccc
Confidence 368999999 799999998888765322 554 677653 1111 01233334566667899
Q ss_pred cEEEEeCC
Q 020875 83 NIAVMVGG 90 (320)
Q Consensus 83 DvVi~~ag 90 (320)
|+|+++..
T Consensus 60 D~Vvi~tp 67 (170)
T d1f06a1 60 DVLFLCMG 67 (170)
T ss_dssp SEEEECSC
T ss_pred ceEEEeCC
Confidence 99999753
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=96.11 E-value=0.021 Score=48.05 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=32.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHH
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL 58 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl 58 (320)
..||||++.+|.+++..|++.|. .|++.+++. .+.++....++
T Consensus 5 AlITGas~GIG~aiA~~la~~Ga-------~V~i~~~~~-~~~~~~~~~~l 47 (284)
T d1e7wa_ 5 ALVTGAAKRLGRSIAEGLHAEGY-------AVCLHYHRS-AAEANALSATL 47 (284)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTC-------EEEEEESSC-HHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHcCC-------EEEEEeCCC-HHHHHHHHHHH
Confidence 46789999999999999999997 788877753 33444444444
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.11 E-value=0.008 Score=47.18 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+..||+|+| +|..+.++++.|.+.|.- +|.+++++. ++++.....+... ..... ...++|
T Consensus 16 ~~~~vlIlG-aGGaarai~~aL~~~g~~------~I~I~nR~~--~ka~~L~~~~~~~---------~~~~~--~~~~~D 75 (167)
T d1npya1 16 KNAKVIVHG-SGGMAKAVVAAFKNSGFE------KLKIYARNV--KTGQYLAALYGYA---------YINSL--ENQQAD 75 (167)
T ss_dssp TTSCEEEEC-SSTTHHHHHHHHHHTTCC------CEEEECSCH--HHHHHHHHHHTCE---------EESCC--TTCCCS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCC------EEEEecccH--HHHHHHHHhhhhh---------hhhcc--cccchh
Confidence 456899999 599999999999998862 789999864 4444333222111 11111 235789
Q ss_pred EEEEeCCC
Q 020875 84 IAVMVGGF 91 (320)
Q Consensus 84 vVi~~ag~ 91 (320)
+||.+..+
T Consensus 76 liINaTpi 83 (167)
T d1npya1 76 ILVNVTSI 83 (167)
T ss_dssp EEEECSST
T ss_pred hheecccc
Confidence 99998544
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.09 E-value=0.0038 Score=51.48 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=31.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
|-...+||+||| +|..|.+.|+.|.++|+ +|.++|+.
T Consensus 2 ~~~~~~kVvVIG-aGiaGl~~A~~L~~~G~-------~V~vier~ 38 (268)
T d1c0pa1 2 MMHSQKRVVVLG-SGVIGLSSALILARKGY-------SVHILARD 38 (268)
T ss_dssp CCCCSCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred CCCCCCcEEEEC-ccHHHHHHHHHHHHCCC-------CEEEEeCC
Confidence 334557999999 59999999999999997 89999975
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.09 E-value=0.03 Score=43.49 Aligned_cols=68 Identities=19% Similarity=0.310 Sum_probs=40.0
Q ss_pred CCEEEEEcCCChhHHH-HHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC-CC
Q 020875 5 PVRVLVTGAAGQIGYA-LVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT-GV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~-la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~-~a 82 (320)
.+||+|+| +|.+|+. .+..+...+. .+++++|.++ ++++...-++.... ..+++.+.++ +.
T Consensus 1 tirvgiiG-~G~~~~~~~~~~l~~~~~------~~~~~~d~~~--~~~~~~~~~~~~~~--------~~~~~~~ll~~~i 63 (167)
T d1xeaa1 1 SLKIAMIG-LGDIAQKAYLPVLAQWPD------IELVLCTRNP--KVLGTLATRYRVSA--------TCTDYRDVLQYGV 63 (167)
T ss_dssp CEEEEEEC-CCHHHHHTHHHHHTTSTT------EEEEEECSCH--HHHHHHHHHTTCCC--------CCSSTTGGGGGCC
T ss_pred CeEEEEEc-CCHHHHHHHHHHHHhCCC------cEEEEEECCH--HHHHHHHHhccccc--------ccccHHHhccccc
Confidence 47999999 6999976 4555554433 3788898763 34443332221110 1234444443 78
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+|+++.
T Consensus 64 D~V~I~t 70 (167)
T d1xeaa1 64 DAVMIHA 70 (167)
T ss_dssp SEEEECS
T ss_pred ceecccc
Confidence 9999864
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.0085 Score=46.83 Aligned_cols=88 Identities=24% Similarity=0.246 Sum_probs=59.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
++++|+| -|.+|..+|..+...|. .|.++|+++. ..+++ .+|-.. . ..+.+++..+|+|
T Consensus 25 k~v~V~G-yG~iG~g~A~~~rg~G~-------~V~v~e~dp~-~al~A-~~dG~~----------v-~~~~~a~~~adiv 83 (163)
T d1li4a1 25 KVAVVAG-YGDVGKGCAQALRGFGA-------RVIITEIDPI-NALQA-AMEGYE----------V-TTMDEACQEGNIF 83 (163)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCHH-HHHHH-HHTTCE----------E-CCHHHHTTTCSEE
T ss_pred CEEEEec-cccccHHHHHHHHhCCC-------eeEeeecccc-hhHHh-hcCceE----------e-eehhhhhhhccEE
Confidence 5899999 89999999999999886 8999999752 12222 122211 1 2578999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
|.+.|... --+ .+.+++.. +++++.+++-
T Consensus 84 vtaTGn~~--vI~---------------~eh~~~MK-dgaIL~N~Gh 112 (163)
T d1li4a1 84 VTTTGCID--IIL---------------GRHFEQMK-DDAIVCNIGH 112 (163)
T ss_dssp EECSSCSC--SBC---------------HHHHTTCC-TTEEEEECSS
T ss_pred EecCCCcc--chh---------------HHHHHhcc-CCeEEEEecc
Confidence 98877432 111 23344443 5688888763
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.025 Score=43.80 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=41.0
Q ss_pred CCEEEEEcCCChhHHH-HHHHHHhcCcCCCCCCeEE-EEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYA-LVPMIARGVMLGTDQPVIL-HMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~-la~~L~~~~~~~~~~~~ev-~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
++||+|+| +|.+|.. ....+....-+ ++ .++|+++ ++++....+. . +...++..+.+++.
T Consensus 1 Kiri~iIG-~G~~g~~~~~~~l~~~~~~------~i~~v~d~~~--~~~~~~~~~~---~------~~~~~~~~~l~~~~ 62 (164)
T d1tlta1 1 KLRIGVVG-LGGIAQKAWLPVLAAASDW------TLQGAWSPTR--AKALPICESW---R------IPYADSLSSLAASC 62 (164)
T ss_dssp CEEEEEEC-CSTHHHHTHHHHHHSCSSE------EEEEEECSSC--TTHHHHHHHH---T------CCBCSSHHHHHTTC
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHhCCCc------EEEEEEechh--Hhhhhhhhcc---c------ccccccchhhhhhc
Confidence 47999999 6999975 55666554322 54 5888875 3333222222 1 11234566667899
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+|+++.
T Consensus 63 D~V~I~t 69 (164)
T d1tlta1 63 DAVFVHS 69 (164)
T ss_dssp SEEEECS
T ss_pred ccccccc
Confidence 9999874
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.96 E-value=0.01 Score=47.57 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=47.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||..++..|..-+. +|..+|+..... ....+. .+....++.+.++++|+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~---~~~~~~---------~~~~~~~l~~~l~~sD~ 103 (188)
T d2naca1 44 AMHVGTVA-AGRIGLAVLRRLAPFDV-------HLHYTDRHRLPE---SVEKEL---------NLTWHATREDMYPVCDV 103 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGTC-------EEEEECSSCCCH---HHHHHH---------TCEECSSHHHHGGGCSE
T ss_pred ccceeecc-ccccchhhhhhhhccCc-------eEEEEeeccccc---cccccc---------cccccCCHHHHHHhccc
Confidence 47999999 69999999999987675 899999853211 111111 12223478899999999
Q ss_pred EEEeCCC
Q 020875 85 AVMVGGF 91 (320)
Q Consensus 85 Vi~~ag~ 91 (320)
|++....
T Consensus 104 v~~~~pl 110 (188)
T d2naca1 104 VTLNCPL 110 (188)
T ss_dssp EEECSCC
T ss_pred hhhcccc
Confidence 9987643
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.90 E-value=0.01 Score=46.98 Aligned_cols=77 Identities=14% Similarity=0.118 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC-CcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL-LKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~-~~~v~~~~~~~~al~~a 82 (320)
+.++|+|+| +|.++.++++.|.+.+ +|.+++|+. ++++....++....... ...+.. .++...+.++
T Consensus 17 ~~k~vlIlG-aGG~arai~~aL~~~~--------~i~I~nR~~--~ka~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (177)
T d1nvta1 17 KDKNIVIYG-AGGAARAVAFELAKDN--------NIIIANRTV--EKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGV 84 (177)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHTSSS--------EEEEECSSH--HHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTC
T ss_pred CCCEEEEEC-CcHHHHHHHHHHcccc--------ceeeehhhh--hHHHHHHHHHHHhhchhhhhhhhh-hhhhhccchh
Confidence 457999999 6999999998885433 789999863 55555555554332111 112222 2455667889
Q ss_pred cEEEEeCCCC
Q 020875 83 NIAVMVGGFP 92 (320)
Q Consensus 83 DvVi~~ag~~ 92 (320)
|+||.+....
T Consensus 85 dliIn~tp~g 94 (177)
T d1nvta1 85 DIIINATPIG 94 (177)
T ss_dssp CEEEECSCTT
T ss_pred hhhccCCccc
Confidence 9999986543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.013 Score=45.01 Aligned_cols=104 Identities=6% Similarity=0.027 Sum_probs=59.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCCh-hhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDA-VEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~-~~al~~a 82 (320)
+-+|.|+| .|.+|..++..|...+. +++++|.++ ++......++...... ..++.+....+ ..-+.+|
T Consensus 3 knHiII~G-~g~~g~~l~~~L~~~~~-------~v~vId~d~--~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a 72 (153)
T d1id1a_ 3 KDHFIVCG-HSILAINTILQLNQRGQ-------NVTVISNLP--EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRC 72 (153)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEECCC--HHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCC-------CEEEEeccc--hhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccC
Confidence 34799999 59999999999999886 788999864 2222222233221111 01111111112 2335789
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEc-Ccc
Q 020875 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA-NPA 134 (320)
Q Consensus 83 DvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~s-nP~ 134 (320)
|.||.+.+ +. ..|+. ++..+++.+ |+.+++.-+ +|.
T Consensus 73 ~~vi~~~~-------~d----~~n~~----~~~~~r~~~-~~~~iia~~~~~~ 109 (153)
T d1id1a_ 73 RAILALSD-------ND----ADNAF----VVLSAKDMS-SDVKTVLAVSDSK 109 (153)
T ss_dssp SEEEECSS-------CH----HHHHH----HHHHHHHHT-SSSCEEEECSSGG
T ss_pred CEEEEccc-------cH----HHHHH----HHHHHHHhC-CCCceEEEEcCHH
Confidence 99998753 11 23433 344556665 666666655 453
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.83 E-value=0.0078 Score=48.71 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=45.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||+.++..|..-|. +|..+|..... . ...+ .. ...++.+.++.+|+
T Consensus 43 gk~vgIiG-~G~IG~~va~~l~~fg~-------~V~~~d~~~~~---~-~~~~---~~--------~~~~l~~~l~~sDi 99 (197)
T d1j4aa1 43 DQVVGVVG-TGHIGQVFMQIMEGFGA-------KVITYDIFRNP---E-LEKK---GY--------YVDSLDDLYKQADV 99 (197)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCCH---H-HHHT---TC--------BCSCHHHHHHHCSE
T ss_pred CCeEEEec-ccccchhHHHhHhhhcc-------cccccCccccc---c-cccc---ee--------eecccccccccccc
Confidence 36999999 79999999999987676 89999976421 1 1111 10 01367888999999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
|++...
T Consensus 100 i~~~~p 105 (197)
T d1j4aa1 100 ISLHVP 105 (197)
T ss_dssp EEECSC
T ss_pred ccccCC
Confidence 999764
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=95.76 E-value=0.0087 Score=46.59 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=25.4
Q ss_pred CCCCCCEEEEEcCCChhHHHHH-HHHHhcCcCCCCCCeEEEE-EecCC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALV-PMIARGVMLGTDQPVILHM-LDIPP 46 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la-~~L~~~~~~~~~~~~ev~l-~D~~~ 46 (320)
|+ +++||+|+| +|.+|..+. ..|..... .|+++ .|++.
T Consensus 1 M~-kkirvaIIG-aG~ig~~~~~~~l~~~~~------~el~avas~~~ 40 (157)
T d1nvmb1 1 MN-QKLKVAIIG-SGNIGTDLMIKVLRNAKY------LEMGAMVGIDA 40 (157)
T ss_dssp CC-SCEEEEEEC-CSHHHHHHHHHHHHHCSS------EEEEEEECSCT
T ss_pred CC-CCcEEEEEc-CcHHHHHHHHHHHhhCCc------ceEEEEEecch
Confidence 77 568999999 799998654 44433333 37664 46653
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0089 Score=47.53 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=48.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc-chhHHHHHHHhcccCCCCcceEE---eCChhhhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA-EALNGVKMELVDAAFPLLKGVVA---TTDAVEACT 80 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~-~~~~~~~~dl~~~~~~~~~~v~~---~~~~~~al~ 80 (320)
..+|+|+| +|..|.++++.|...+.. ++.+++++.+. +++......+.... .....+.. ..++.+.+.
T Consensus 18 ~k~vlIlG-aGGaarai~~al~~~g~~------~i~i~nR~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 89 (182)
T d1vi2a1 18 GKTMVLLG-AGGASTAIGAQGAIEGLK------EIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQAFAEALA 89 (182)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCS------EEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHH
T ss_pred CCEEEEEC-CcHHHHHHHHHHhhcCCc------eEeeeccchHHHHHHHHHHHHHHhhc-CcceEeeecccccchhhhhc
Confidence 46999999 599999999999988762 89999987421 22222222222211 11111111 123455678
Q ss_pred CCcEEEEeCCC
Q 020875 81 GVNIAVMVGGF 91 (320)
Q Consensus 81 ~aDvVi~~ag~ 91 (320)
++|+||.+...
T Consensus 90 ~~diiIN~Tp~ 100 (182)
T d1vi2a1 90 SADILTNGTKV 100 (182)
T ss_dssp TCSEEEECSST
T ss_pred ccceeccccCC
Confidence 99999998644
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.56 E-value=0.046 Score=42.99 Aligned_cols=70 Identities=9% Similarity=-0.004 Sum_probs=41.3
Q ss_pred CCCEEEEEcCCChhHHH-HHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC-
Q 020875 4 EPVRVLVTGAAGQIGYA-LVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT- 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~-la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~- 80 (320)
+++||+|+| +|.+|.. .+..+...+. ..+|+ ++|+++ ++++....++. .....+++.+.++
T Consensus 2 kkirigiIG-~G~~g~~~h~~~l~~~~~-----~~~i~~v~d~~~--~~~~~~~~~~~--------~~~~~~~~~ell~~ 65 (181)
T d1zh8a1 2 RKIRLGIVG-CGIAARELHLPALKNLSH-----LFEITAVTSRTR--SHAEEFAKMVG--------NPAVFDSYEELLES 65 (181)
T ss_dssp CCEEEEEEC-CSHHHHHTHHHHHHTTTT-----TEEEEEEECSSH--HHHHHHHHHHS--------SCEEESCHHHHHHS
T ss_pred CCcEEEEEc-CCHHHHHHHHHHHHhCCC-----CeEEEEEEeccH--hhhhhhhcccc--------ccceeeeeeccccc
Confidence 367999999 6999986 4566654321 12555 778763 33332222221 1123456767664
Q ss_pred -CCcEEEEeC
Q 020875 81 -GVNIAVMVG 89 (320)
Q Consensus 81 -~aDvVi~~a 89 (320)
+.|+|+++.
T Consensus 66 ~~id~v~I~t 75 (181)
T d1zh8a1 66 GLVDAVDLTL 75 (181)
T ss_dssp SCCSEEEECC
T ss_pred cccceeeccc
Confidence 689999864
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.52 E-value=0.013 Score=46.59 Aligned_cols=60 Identities=22% Similarity=0.121 Sum_probs=45.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||..++..+..-|. +|..+|+...+. . .....++.+.+++||+
T Consensus 42 gk~vgIiG-~G~IG~~va~~l~~~g~-------~v~~~d~~~~~~------------~------~~~~~~l~ell~~sDi 95 (181)
T d1qp8a1 42 GEKVAVLG-LGEIGTRVGKILAALGA-------QVRGFSRTPKEG------------P------WRFTNSLEEALREARA 95 (181)
T ss_dssp TCEEEEES-CSTHHHHHHHHHHHTTC-------EEEEECSSCCCS------------S------SCCBSCSHHHHTTCSE
T ss_pred CceEEEec-cccccccceeeeecccc-------cccccccccccc------------c------eeeeechhhhhhccch
Confidence 46899999 69999999999988776 899999864210 0 0011367899999999
Q ss_pred EEEeCC
Q 020875 85 AVMVGG 90 (320)
Q Consensus 85 Vi~~ag 90 (320)
|++...
T Consensus 96 v~~~~p 101 (181)
T d1qp8a1 96 AVCALP 101 (181)
T ss_dssp EEECCC
T ss_pred hhcccc
Confidence 999753
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.46 E-value=0.014 Score=46.83 Aligned_cols=67 Identities=13% Similarity=-0.003 Sum_probs=46.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.||+.++..+..-|. ++..+|...... ... .... .....++.+.++.||+
T Consensus 47 g~tvgIiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~--~~~---~~~~-------~~~~~~l~~ll~~sD~ 106 (191)
T d1gdha1 47 NKTLGIYG-FGSIGQALAKRAQGFDM-------DIDYFDTHRASS--SDE---ASYQ-------ATFHDSLDSLLSVSQF 106 (191)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSSCCCH--HHH---HHHT-------CEECSSHHHHHHHCSE
T ss_pred ccceEEee-cccchHHHHHHHHhhcc-------cccccccccccc--chh---hccc-------ccccCCHHHHHhhCCe
Confidence 47999999 69999999998887776 899999754211 111 1111 1222368889999999
Q ss_pred EEEeCCC
Q 020875 85 AVMVGGF 91 (320)
Q Consensus 85 Vi~~ag~ 91 (320)
|++....
T Consensus 107 v~l~~pl 113 (191)
T d1gdha1 107 FSLNAPS 113 (191)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9987643
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.44 E-value=0.0075 Score=51.24 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.+|+||+||| +|..|.+.|..|.+.|+ +|.+++..
T Consensus 28 ~~pkkV~IIG-aG~aGLsaA~~L~~~G~-------~V~vlE~~ 62 (370)
T d2iida1 28 SNPKHVVIVG-AGMAGLSAAYVLAGAGH-------QVTVLEAS 62 (370)
T ss_dssp SSCCEEEEEC-CBHHHHHHHHHHHHHTC-------EEEEECSS
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHCCC-------CEEEEeCC
Confidence 3578999999 59999999999999997 89999975
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.39 E-value=0.041 Score=43.55 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+|-||+|+| +|-+|.+-+......|- .|..+|.+.
T Consensus 28 ~pa~VvViG-aGvaG~~Aa~~A~~lGA-------~V~v~D~~~ 62 (183)
T d1l7da1 28 PPARVLVFG-VGVAGLQAIATAKRLGA-------VVMATDVRA 62 (183)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCS
T ss_pred CCcEEEEEc-CcHHHHHHHHHHHHcCC-------EEEEEeccH
Confidence 567999999 59999998888888775 899999975
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.33 E-value=0.011 Score=48.91 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
..+.||+||| +|..|..+|..|.++|+ ++.++|+++
T Consensus 2 ~~~~kV~IiG-aG~aGl~~A~~L~~~G~-------~v~v~Er~~ 37 (265)
T d2voua1 2 PTTDRIAVVG-GSISGLTAALMLRDAGV-------DVDVYERSP 37 (265)
T ss_dssp CCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred CCCCcEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEeCCC
Confidence 3568999999 59999999999999997 899999753
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=95.25 E-value=0.042 Score=48.02 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh-cCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIAR-GVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
....++|+| +|..+..-+..+.. .++ .+|.++|+++ ++.+....++.+. ....+....+.++++++|
T Consensus 127 da~~l~iiG-~G~QA~~~~~a~~~v~~i------~~V~v~~r~~--~~~~~~~~~l~~~---~g~~v~~~~s~~eav~~A 194 (340)
T d1x7da_ 127 NARKMALIG-NGAQSEFQALAFHKHLGI------EEIVAYDTDP--LATAKLIANLKEY---SGLTIRRASSVAEAVKGV 194 (340)
T ss_dssp TCCEEEEEC-CSTTHHHHHHHHHHHSCC------CEEEEECSSH--HHHHHHHHHHTTC---TTCEEEECSSHHHHHTTC
T ss_pred CCceEEEEc-ccHHHHHHHHHHhhhcce------eeeEEEecCh--HHHHHHHHhhhhc---cCCCceecCCHHHHHhcC
Confidence 357999999 69888877765543 343 3899999974 4444444444321 223567778899999999
Q ss_pred cEEEEeCC
Q 020875 83 NIAVMVGG 90 (320)
Q Consensus 83 DvVi~~ag 90 (320)
|+|+.+..
T Consensus 195 DIi~t~Ta 202 (340)
T d1x7da_ 195 DIITTVTA 202 (340)
T ss_dssp SEEEECCC
T ss_pred Cceeeccc
Confidence 99987543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.02 E-value=0.022 Score=41.60 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+..|.||+|+| +|++|.-+|..|...|. +|.++.+.+
T Consensus 19 ~~~p~~v~IiG-gG~ig~E~A~~l~~~G~-------~Vtlve~~~ 55 (117)
T d1ebda2 19 GEVPKSLVVIG-GGYIGIELGTAYANFGT-------KVTILEGAG 55 (117)
T ss_dssp SSCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred hhcCCeEEEEC-CCccceeeeeeeccccc-------EEEEEEecc
Confidence 34578999999 59999999999999886 899998753
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.021 Score=42.13 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+..|.|++|+| +|++|.-+|..|...|. +|.++++.+
T Consensus 20 ~~~p~~~vIiG-~G~ig~E~A~~l~~lG~-------~Vtii~~~~ 56 (122)
T d1v59a2 20 KEIPKRLTIIG-GGIIGLEMGSVYSRLGS-------KVTVVEFQP 56 (122)
T ss_dssp SSCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred ccCCCeEEEEC-CCchHHHHHHHHHhhCc-------ceeEEEecc
Confidence 44578999999 59999999999999887 899999753
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=94.93 E-value=0.0052 Score=52.97 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=62.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc----CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG----VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~----~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
.||+|.| +|.-|..++..|+.. |+-...-...++++|++. .+.....|+.+...++..+.....++.++++.
T Consensus 26 ~kivi~G-AGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~G---lv~~~r~d~~~~k~~~a~~~~~~~~l~~~i~~ 101 (308)
T d1o0sa1 26 EKYLFFG-AGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDG---LVTKNRKEMNPRHVQFAKDMPETTSILEVIRA 101 (308)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTE---ECBTTCSSCCGGGTTTCBSSCCCCCHHHHHHH
T ss_pred cEEEEEC-cCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCC---CccCCCcccCHHHHHHHHhcccCCcHHHHHhc
Confidence 5999999 599999988877643 321000012599999752 11111123333222332333233345555543
Q ss_pred --CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 82 --VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 82 --aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
.+++|-+.+.+. . +.+++++.|.+.+ ++.+|+-.|||..
T Consensus 102 ~kptvliG~s~~~g---~-----------ft~evv~~Ma~~~-~~PIIFaLSNPtp 142 (308)
T d1o0sa1 102 ARPGALIGASTVRG---A-----------FNEEVIRAMAEIN-ERPIIFALSNPTS 142 (308)
T ss_dssp HCCSEEEECSSCTT---C-----------SCHHHHHHHHHHC-SSCEEEECCSSGG
T ss_pred cccccEEecccccC---C-----------CCHHHHHHHHhhC-CCcEEEEccCCCC
Confidence 356666555432 1 1255667788887 6788888999974
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=94.93 E-value=0.049 Score=43.62 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=28.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+||.|+| -|.-|..++..|.+.++.+ .+.+.+|.+
T Consensus 1 ~kI~viG-vGGaG~n~v~~l~~~~~~~----v~~iainTD 35 (194)
T d1w5fa1 1 LKIKVIG-VGGAGNNAINRMIEIGIHG----VEFVAVNTD 35 (194)
T ss_dssp CCEEEEE-EHHHHHHHHHHHHHHCCTT----EEEEEEESC
T ss_pred CeEEEEE-eCchHHHHHHHHHHcCCCc----eEEEEEcCC
Confidence 5899999 7999999999999887643 477777765
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.92 E-value=0.03 Score=44.55 Aligned_cols=65 Identities=15% Similarity=0.011 Sum_probs=45.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++++|+| .|.+|+.++..+..-|. +|..+|+...++ . ..+.. +. ..++.+.++.||+
T Consensus 44 ~k~vgiiG-~G~IG~~va~~~~~fg~-------~v~~~d~~~~~~--~--~~~~~---------~~-~~~l~ell~~sDi 101 (184)
T d1ygya1 44 GKTVGVVG-LGRIGQLVAQRIAAFGA-------YVVAYDPYVSPA--R--AAQLG---------IE-LLSLDDLLARADF 101 (184)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECTTSCHH--H--HHHHT---------CE-ECCHHHHHHHCSE
T ss_pred ceeeeecc-ccchhHHHHHHhhhccc-------eEEeecCCCChh--H--HhhcC---------ce-eccHHHHHhhCCE
Confidence 47999999 69999999998877665 899999764211 1 11111 11 1367889999999
Q ss_pred EEEeCCC
Q 020875 85 AVMVGGF 91 (320)
Q Consensus 85 Vi~~ag~ 91 (320)
|++....
T Consensus 102 v~~~~Pl 108 (184)
T d1ygya1 102 ISVHLPK 108 (184)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9997643
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=94.91 E-value=0.023 Score=46.56 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=42.6
Q ss_pred CCCEEEEEcCCChhHH-HHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC-
Q 020875 4 EPVRVLVTGAAGQIGY-ALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT- 80 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~-~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~- 80 (320)
++.||+|+| +|.+|. +++..+..... .+|+ ++|+++ ++++.....+. .. ...+...+++.+.++
T Consensus 32 ~~iriaiIG-~G~~~~~~~~~~~~~~~~------~~ivav~d~~~--~~a~~~~~~~~-i~---~~~~~~~~d~~ell~~ 98 (221)
T d1h6da1 32 RRFGYAIVG-LGKYALNQILPGFAGCQH------SRIEALVSGNA--EKAKIVAAEYG-VD---PRKIYDYSNFDKIAKD 98 (221)
T ss_dssp CCEEEEEEC-CSHHHHHTHHHHTTTCSS------EEEEEEECSCH--HHHHHHHHHTT-CC---GGGEECSSSGGGGGGC
T ss_pred CCEEEEEEc-CcHHHHHHHHHHHHhCCC------ceEEEEecCCH--HHHHHHHHhhc-cc---cccccccCchhhhccc
Confidence 346999999 699996 55555544322 2665 889864 44443222221 10 123444456666664
Q ss_pred -CCcEEEEeC
Q 020875 81 -GVNIAVMVG 89 (320)
Q Consensus 81 -~aDvVi~~a 89 (320)
+.|+|+++.
T Consensus 99 ~~iD~V~I~t 108 (221)
T d1h6da1 99 PKIDAVYIIL 108 (221)
T ss_dssp TTCCEEEECS
T ss_pred ccceeeeecc
Confidence 688998864
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.023 Score=41.45 Aligned_cols=37 Identities=32% Similarity=0.358 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+.-|.||+|+| +|++|.-+|..|.+.|. +|.++++.+
T Consensus 18 ~~~p~~vvIiG-gG~ig~E~A~~l~~~G~-------~Vtlve~~~ 54 (116)
T d1gesa2 18 PALPERVAVVG-AGYIGVELGGVINGLGA-------KTHLFEMFD 54 (116)
T ss_dssp SSCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred hhCCCEEEEEC-CChhhHHHHHHhhcccc-------EEEEEeecc
Confidence 34578999999 59999999999999886 899999853
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.81 E-value=0.047 Score=42.78 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
+.++|+|+|.+.-||..++..|.++|. .+.+++... .++.+.+++||
T Consensus 38 ~Gk~vvVIGrS~iVGrPLa~lL~~~ga-------tVt~~~~~t--------------------------~~l~~~~~~aD 84 (170)
T d1a4ia1 38 AGRHAVVVGRSKIVGAPMHDLLLWNNA-------TVTTCHSKT--------------------------AHLDEEVNKGD 84 (170)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTC-------EEEEECTTC--------------------------SSHHHHHTTCS
T ss_pred ccceEEEEecCCccchHHHHHHHhccC-------ceEEEeccc--------------------------ccHHHHHhhcc
Confidence 347999999888999999999999886 788888642 03344566788
Q ss_pred EEEEeCCCCC
Q 020875 84 IAVMVGGFPR 93 (320)
Q Consensus 84 vVi~~ag~~~ 93 (320)
+||.++|.|.
T Consensus 85 ivi~a~G~~~ 94 (170)
T d1a4ia1 85 ILVVATGQPE 94 (170)
T ss_dssp EEEECCCCTT
T ss_pred chhhcccccc
Confidence 8888777553
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.70 E-value=0.017 Score=49.88 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHH
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVK 55 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~ 55 (320)
+++||+||| +|.-|...|..|.+.|+ +|.+++.+ +.+-|.+
T Consensus 1 k~KKI~IIG-aG~sGL~aA~~L~k~G~-------~V~viEk~---~~iGG~~ 41 (314)
T d2bi7a1 1 KSKKILIVG-AGFSGAVIGRQLAEKGH-------QVHIIDQR---DHIGGNS 41 (314)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEEESS---SSSSGGG
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhCCC-------CEEEEECC---CCCcCee
Confidence 467999999 59999999999999887 89999975 3444544
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.64 E-value=0.021 Score=46.09 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=57.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcEE
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIA 85 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDvV 85 (320)
++|+|+| .|.||+.++..|..-|. +|..+|+...... . ..+. ..++.+.++.||+|
T Consensus 46 ktvgIiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~~----~-----------~~~~-~~~l~~l~~~~D~v 101 (199)
T d1dxya1 46 QTVGVMG-TGHIGQVAIKLFKGFGA-------KVIAYDPYPMKGD----H-----------PDFD-YVSLEDLFKQSDVI 101 (199)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCCSSC----C-----------TTCE-ECCHHHHHHHCSEE
T ss_pred eeeeeee-cccccccccccccccce-------eeeccCCccchhh----h-----------cchh-HHHHHHHHHhcccc
Confidence 6999999 79999999999987776 8999997532110 0 0111 13678888999999
Q ss_pred EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 86 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 86 i~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
++..-... .++. + -| .+....| ++++++|+++-
T Consensus 102 ~~~~plt~---~T~~-l--i~----~~~l~~m----k~~a~lIN~aR 134 (199)
T d1dxya1 102 DLHVPGIE---QNTH-I--IN----EAAFNLM----KPGAIVINTAR 134 (199)
T ss_dssp EECCCCCG---GGTT-S--BC----HHHHHHS----CTTEEEEECSC
T ss_pred eeeecccc---cccc-c--cc----HHHhhcc----CCceEEEeccc
Confidence 99763321 1110 1 11 2233333 26688999984
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=94.63 E-value=0.011 Score=49.03 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=29.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
|||+||| +|..|.+.|..|.++|+ +|.+++.+
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G~-------~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRGT-------DAVLLESS 32 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTTC-------CEEEECSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCC-------CEEEEecC
Confidence 7899999 59999999999999997 79999875
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.58 E-value=0.042 Score=47.61 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
.+.+++|+| +|..+...+..+...--+ .+|.++++++ ++.+....++.+.. ..+ ..+..+++++||
T Consensus 124 ~~~~l~iiG-aG~QA~~~~~al~~~~~i-----~~i~v~~r~~--e~~~~~~~~~~~~~----~~~--~~~~~~a~~~aD 189 (320)
T d1omoa_ 124 NSSVFGFIG-CGTQAYFQLEALRRVFDI-----GEVKAYDVRE--KAAKKFVSYCEDRG----ISA--SVQPAEEASRCD 189 (320)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHSCC-----CEEEEECSSH--HHHHHHHHHHHHTT----CCE--EECCHHHHTSSS
T ss_pred CccEEEEec-CcccHHHHHHHHHHHhhh-----hhcccccCCH--HHHHHHHHHHHhcC----Ccc--ccchhhhhcccc
Confidence 457899999 699998888766643222 3899999874 55555555554432 122 224568899999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+|+.+.
T Consensus 190 iV~taT 195 (320)
T d1omoa_ 190 VLVTTT 195 (320)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 987754
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.034 Score=43.39 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
..++|+|+|.+.-||..++..|.+.+. .|...+... .++.+.+++||
T Consensus 36 ~GK~v~VIGrS~~VG~Pla~lL~~~ga-------tVt~~h~~t--------------------------~~l~~~~~~AD 82 (166)
T d1b0aa1 36 FGLNAVVIGASNIVGRPMSMELLLAGC-------TTTVTHRFT--------------------------KNLRHHVENAD 82 (166)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTTC-------EEEEECSSC--------------------------SCHHHHHHHCS
T ss_pred ccceEEEEeccccccHHHHHHHHHhhc-------ccccccccc--------------------------chhHHHHhhhh
Confidence 347999999888899999999998886 787777532 13445567888
Q ss_pred EEEEeCCCCC
Q 020875 84 IAVMVGGFPR 93 (320)
Q Consensus 84 vVi~~ag~~~ 93 (320)
+||.++|.|.
T Consensus 83 ivI~a~G~p~ 92 (166)
T d1b0aa1 83 LLIVAVGKPG 92 (166)
T ss_dssp EEEECSCCTT
T ss_pred HhhhhccCcc
Confidence 8888888653
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.50 E-value=0.067 Score=42.37 Aligned_cols=78 Identities=17% Similarity=0.052 Sum_probs=49.0
Q ss_pred CCCEEEEEc-CCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTG-AAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiG-A~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
+..||+++| +...|...++..+..-|. ++.+.-...- ..-.....++..........++.+.+..++++++
T Consensus 4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~-------~l~l~~P~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~a 75 (185)
T d1dxha2 4 HDISYAYLGDARNNMGNSLLLIGAKLGM-------DVRIAAPKAL-WPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGV 75 (185)
T ss_dssp GGCEEEEESCCSSHHHHHHHHHHHHTTC-------EEEEECCGGG-SCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTC
T ss_pred CCCEEEEEcCCcchHHHHHHHHHHHcCC-------EEEEEccHHH-HhhhHHHHHHHHHhhccCCeEEEEeChhhccccc
Confidence 347999999 424788888888877675 8888876321 0001111111111111234678888999999999
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+|....
T Consensus 76 DvVyt~~ 82 (185)
T d1dxha2 76 DFVHTDV 82 (185)
T ss_dssp SEEEECC
T ss_pred cEEEeeh
Confidence 9988754
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.44 E-value=0.024 Score=49.05 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
|+ +++||+||| +|..|...|..|++.+.. .+|++++++.
T Consensus 1 m~-~~KrVaIIG-aG~sGl~~A~~L~~~~~~-----~~v~vfEk~~ 39 (335)
T d2gv8a1 1 LP-TIRKIAIIG-AGPSGLVTAKALLAEKAF-----DQVTLFERRG 39 (335)
T ss_dssp CC-SCCEEEEEC-CSHHHHHHHHHHHTTTCC-----SEEEEECSSS
T ss_pred CC-CCCeEEEEC-cCHHHHHHHHHHHHhCCC-----CCEEEEECCC
Confidence 55 557999999 599999999998877643 2899999863
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.029 Score=44.43 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+++||+||| +|..|...|..|.++|+ +|.|++...
T Consensus 42 ~~k~V~IIG-aGPAGL~AA~~la~~G~-------~Vtl~E~~~ 76 (179)
T d1ps9a3 42 QKKNLAVVG-AGPAGLAFAINAAARGH-------QVTLFDAHS 76 (179)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEEESSS
T ss_pred CCcEEEEEC-ccHHHHHHHHHHHhhcc-------ceEEEeccC
Confidence 468999999 59999999999999998 899999853
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=94.37 E-value=0.0095 Score=51.12 Aligned_cols=111 Identities=11% Similarity=0.124 Sum_probs=60.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc----CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcC-
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG----VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACT- 80 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~----~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~- 80 (320)
.||++.| +|.-|..++..|+.. |+....-...+.++|++. .+.....|+.+...++..+.....++.+.++
T Consensus 26 ~kiV~~G-AGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kG---lv~~~R~~l~~~k~~~a~~~~~~~~l~~~i~~ 101 (298)
T d1gq2a1 26 HTVLFQG-AGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKG---LIVKGRASLTPEKEHFAHEHCEMKNLEDIVKD 101 (298)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTE---ECBTTCSSCCTTGGGGCBSCCCCCCHHHHHHH
T ss_pred cEEEEEC-ccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCC---cccCCCcccCHHHHHHHHHhhhhhhhHHHhhc
Confidence 5999999 599999988777532 321000012689999852 1111122332222122112112224444444
Q ss_pred -CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 81 -GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 81 -~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
+.+++|-+.+.+. . +.+++++.|.+.+ ++.+|+-.|||..
T Consensus 102 vkptvliG~s~~~g---~-----------ft~evv~~ma~~~-~~PIIFaLSNPt~ 142 (298)
T d1gq2a1 102 IKPTVLIGVAAIGG---A-----------FTQQILQDMAAFN-KRPIIFALSNPTS 142 (298)
T ss_dssp HCCSEEEECSCCTT---C-----------SCHHHHHHHHHHC-SSCEEEECCSSGG
T ss_pred cChheeEecccccC---c-----------CCHHHHHHHHhhC-CCCEEEEccCCCC
Confidence 3567776655442 1 1245667777777 6788888999974
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.062 Score=42.66 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=58.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.++|+|+| .|.+|..++..+..-|. +|..+|+..... . + ......++.+.++.+|+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~-------~v~~~d~~~~~~--~-------~-------~~~~~~~l~ell~~sDi 99 (188)
T d1sc6a1 44 GKKLGIIG-YGHIGTQLGILAESLGM-------YVYFYDIENKLP--L-------G-------NATQVQHLSDLLNMSDV 99 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSCCCC--C-------T-------TCEECSCHHHHHHHCSE
T ss_pred ceEEEEee-cccchhhhhhhcccccc-------eEeeccccccch--h-------h-------hhhhhhhHHHHHhhccc
Confidence 46999999 79999999998887776 899999753111 0 0 11112368888999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcC
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVAN 132 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~sn 132 (320)
|++....... ++. + -| .+..+.+ . +++++|+++-
T Consensus 100 i~i~~plt~~---T~~-l--i~----~~~l~~m---k-~~a~lIN~aR 133 (188)
T d1sc6a1 100 VSLHVPENPS---TKN-M--MG----AKEISLM---K-PGSLLINASR 133 (188)
T ss_dssp EEECCCSSTT---TTT-C--BC----HHHHHHS---C-TTEEEEECSC
T ss_pred eeecccCCcc---hhh-h--cc----HHHHhhC---C-CCCEEEEcCc
Confidence 9998754321 110 1 11 2233443 2 6688999984
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.34 E-value=0.071 Score=41.78 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=44.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHH--HhcccCCC-----CcceEEeCChh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKME--LVDAAFPL-----LKGVVATTDAV 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~d--l~~~~~~~-----~~~v~~~~~~~ 76 (320)
++||+|.| .|.||..++..+.+++-+ +++ +-|..++.........+ +.+..... ...+....++.
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~~di------eiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQDDM------ELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLN 74 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTE------EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHH
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhCCCc------eEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhh
Confidence 36999999 799999998888765432 555 55554321111111100 00000000 01233334566
Q ss_pred hhcCCCcEEEEeCCC
Q 020875 77 EACTGVNIAVMVGGF 91 (320)
Q Consensus 77 ~al~~aDvVi~~ag~ 91 (320)
..+.++|+||-+.|.
T Consensus 75 ~~~~~vDvViEcTG~ 89 (172)
T d2czca2 75 DLLEKVDIIVDATPG 89 (172)
T ss_dssp HHHTTCSEEEECCST
T ss_pred hhhccCCEEEECCCC
Confidence 778899999998764
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.33 E-value=0.036 Score=40.81 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=30.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+.||+|+| +|++|.-+|..|.+.|. +|.++++.+
T Consensus 30 ~~~vvIIG-gG~iG~E~A~~l~~~g~-------~Vtli~~~~ 63 (121)
T d1d7ya2 30 QSRLLIVG-GGVIGLELAATARTAGV-------HVSLVETQP 63 (121)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred CCeEEEEC-cchhHHHHHHHhhcccc-------eEEEEeecc
Confidence 57999999 59999999999999886 899999853
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.31 E-value=0.038 Score=40.69 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
++.||+|+| +|++|.-+|..|.+.|. +|.++++.+
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g~-------~Vtlie~~~ 63 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAGK-------KVTVIDILD 63 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccce-------EEEEEEecC
Confidence 457999999 59999999999999887 899998753
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.29 E-value=0.034 Score=40.66 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+|.||+|+| +|++|.-+|..|...|. +|.++++.
T Consensus 21 ~p~~v~IiG-gG~iG~E~A~~l~~~g~-------~Vtlv~~~ 54 (117)
T d1onfa2 21 ESKKIGIVG-SGYIAVELINVIKRLGI-------DSYIFARG 54 (117)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHTTTC-------EEEEECSS
T ss_pred CCCEEEEEC-CchHHHHHHHHHHhccc-------cceeeehh
Confidence 378999999 59999999999998876 89999975
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=94.25 E-value=0.043 Score=40.17 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=31.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+..|.||+|+| +|++|.-+|..|...|. +|.++.+..
T Consensus 19 ~~~p~~i~IiG-~G~ig~E~A~~l~~~G~-------~Vtiv~~~~ 55 (119)
T d3lada2 19 QNVPGKLGVIG-AGVIGLELGSVWARLGA-------EVTVLEAMD 55 (119)
T ss_dssp SSCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSS
T ss_pred ccCCCeEEEEC-CChHHHHHHHHHHHcCC-------ceEEEEeec
Confidence 45678999999 59999999999999886 888888653
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.15 E-value=0.03 Score=46.24 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=30.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
|+||+|+| +|..|.++|..|.+.|+. .|.++++..
T Consensus 1 ~~~V~IvG-aG~aGl~~A~~L~~~Gi~------~V~V~Er~~ 35 (288)
T d3c96a1 1 PIDILIAG-AGIGGLSCALALHQAGIG------KVTLLESSS 35 (288)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCS------EEEEEESSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCC------eEEEEeCCC
Confidence 68999999 599999999999999852 788999864
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.10 E-value=0.042 Score=39.87 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
..|.|++|+| +|++|.-+|..|.+.|. +|.++++.
T Consensus 19 ~~p~~vvIiG-gG~~G~E~A~~l~~~g~-------~Vtlve~~ 53 (115)
T d1lvla2 19 ALPQHLVVVG-GGYIGLELGIAYRKLGA-------QVSVVEAR 53 (115)
T ss_dssp SCCSEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSS
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHhhccc-------ceEEEeee
Confidence 3478999999 59999999999999886 89999875
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.98 E-value=0.024 Score=44.59 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+.||+||| +|..|...|..|.+.|+- +|.++++..
T Consensus 3 ~~~kVaIIG-aGpaGl~aA~~l~~~G~~------~V~v~E~~~ 38 (196)
T d1gtea4 3 YSAKIALLG-AGPASISCASFLARLGYS------DITIFEKQE 38 (196)
T ss_dssp GGCCEEEEC-CSHHHHHHHHHHHHTTCC------CEEEEESSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHCCCC------eEEEEEecC
Confidence 467999999 599999999999999872 588999853
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=93.96 E-value=0.34 Score=33.77 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCChhH-HHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIG-YALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG-~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
+.+||-++|- |-+| ++||..|.++|+ +|.-.|...+. ....+.+.. ..+.... ..+.++++
T Consensus 7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~-------~VsGSD~~~~~-----~~~~L~~~G----i~v~~g~-~~~~i~~~ 68 (96)
T d1p3da1 7 RVQQIHFIGI-GGAGMSGIAEILLNEGY-------QISGSDIADGV-----VTQRLAQAG----AKIYIGH-AEEHIEGA 68 (96)
T ss_dssp TCCEEEEETT-TSTTHHHHHHHHHHHTC-------EEEEEESCCSH-----HHHHHHHTT----CEEEESC-CGGGGTTC
T ss_pred hCCEEEEEEE-CHHHHHHHHHHHHhCCC-------EEEEEeCCCCh-----hhhHHHHCC----CeEEECC-ccccCCCC
Confidence 4579999995 5555 778999999998 89999986421 122333322 1233322 34557899
Q ss_pred cEEEEeCCCCC
Q 020875 83 NIAVMVGGFPR 93 (320)
Q Consensus 83 DvVi~~ag~~~ 93 (320)
|.||.+.+++.
T Consensus 69 d~vV~S~AI~~ 79 (96)
T d1p3da1 69 SVVVVSSAIKD 79 (96)
T ss_dssp SEEEECTTSCT
T ss_pred CEEEECCCcCC
Confidence 99999988774
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.94 E-value=0.035 Score=40.89 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+..|.|++|+| +|++|.-+|..|...|. +|.++.++
T Consensus 17 ~~~P~~vvIIG-gG~iG~E~A~~l~~lG~-------~Vtii~~~ 52 (122)
T d1h6va2 17 PYCPGKTLVVG-ASYVALECAGFLAGIGL-------DVTVMVRS 52 (122)
T ss_dssp SSCCCSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEESS
T ss_pred ccCCCeEEEEC-CCccHHHHHHHHhhcCC-------eEEEEEec
Confidence 44578999999 59999999999999886 78888764
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.052 Score=40.00 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.-|.||+|+| +|++|.-+|..|...|. +|.++.+.+
T Consensus 20 ~~pk~vvIvG-gG~iG~E~A~~l~~~G~-------~Vtlv~~~~ 55 (125)
T d3grsa2 20 ELPGRSVIVG-AGYIAVEMAGILSALGS-------KTSLMIRHD 55 (125)
T ss_dssp SCCSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred hcCCEEEEEc-CCccHHHHHHHHhcCCc-------EEEEEeecc
Confidence 3478999999 59999999999999886 899999853
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.13 Score=39.76 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=28.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+|+|+| +|.+|...+..+...|.. .|++.|+++
T Consensus 28 d~VlI~G-~G~iG~~~~~~a~~~G~~------~Vi~~d~~~ 61 (171)
T d1pl8a2 28 HKVLVCG-AGPIGMVTLLVAKAMGAA------QVVVTDLSA 61 (171)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCS------EEEEEESCH
T ss_pred CEEEEEC-CCccHHHHHHHHHHcCCc------eEEeccCCH
Confidence 5899999 599999988888877752 799999874
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.82 E-value=0.0069 Score=47.84 Aligned_cols=79 Identities=9% Similarity=0.091 Sum_probs=47.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEe--CChhhhcCCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVAT--TDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~--~~~~~al~~a 82 (320)
.++|+|+|.+.-||.+++..|.++|. .+...+.+...+........+.+.. ..++... ..+.+....+
T Consensus 29 GK~vvVIGrS~iVG~Pla~lL~~~ga-------TVt~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lk~~~~~a 98 (171)
T d1edza1 29 GKKCIVINRSEIVGRPLAALLANDGA-------TVYSVDVNNIQKFTRGESLKLNKHH---VEDLGEYSEDLLKKCSLDS 98 (171)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSC-------EEEEECSSEEEEEESCCCSSCCCCE---EEEEEECCHHHHHHHHHHC
T ss_pred CCEEEEECCccccHHHHHHHHHHCCC-------EEEEeccccccccccccceeeeeec---cccccccchhHHhhccccC
Confidence 47999999888899999999998875 7888876421110000001111110 0111111 1255666789
Q ss_pred cEEEEeCCCCC
Q 020875 83 NIAVMVGGFPR 93 (320)
Q Consensus 83 DvVi~~ag~~~ 93 (320)
|+||..+|.|.
T Consensus 99 DIvIsavG~p~ 109 (171)
T d1edza1 99 DVVITGVPSEN 109 (171)
T ss_dssp SEEEECCCCTT
T ss_pred CEEEEccCCCc
Confidence 99999988764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.81 E-value=0.031 Score=46.17 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+||+||| +|.-|...|..|.+.|+ +|.+++..
T Consensus 2 KkV~IIG-aG~aGL~aA~~La~~G~-------~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIG-AGVSGLAAAYKLKIHGL-------NVTVFEAE 33 (373)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTSC-------EEEEECSS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC-------CEEEEeCC
Confidence 5999999 59999999999999997 89999975
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.062 Score=38.91 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
...||+|+| +|..|.-++....+.|+ +++++|.++
T Consensus 10 ~~~kigIlG-gGQL~rMla~aA~~lG~-------~v~v~d~~~ 44 (111)
T d1kjqa2 10 AATRVMLLG-SGELGKEVAIECQRLGV-------EVIAVDRYA 44 (111)
T ss_dssp TCCEEEEES-CSHHHHHHHHHHHTTTC-------EEEEEESST
T ss_pred CCCEEEEEe-CCHHHHHHHHHHHHCCC-------EEEEEcCCC
Confidence 347999999 59999999999888887 899999875
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=93.59 E-value=0.038 Score=46.21 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=68.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
..||+++|- . .++..+.+++. ++.++|+++. ..|+.+ ...++.+..||+
T Consensus 122 g~kV~vIG~---~--P~v~~l~~~~~-------~~~VlE~~p~-------~gd~p~------------~~~~~lLp~aD~ 170 (251)
T d2h1qa1 122 GKKVGVVGH---F--PHLESLLEPIC-------DLSILEWSPE-------EGDYPL------------PASEFILPECDY 170 (251)
T ss_dssp TSEEEEESC---C--TTHHHHHTTTS-------EEEEEESSCC-------TTCEEG------------GGHHHHGGGCSE
T ss_pred CCEEEEEec---c--hhHHHHHhcCC-------cEEEEeCCCC-------CCCCCc------------hHHHHhhhcCCE
Confidence 369999984 2 56777777664 8899998741 122222 245778899999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcchhhHHHHHHHCCCCCCCcEEEeehhhHHHH
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRA 164 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~~~~~~~~~~~~~~~~~~i~~~t~ld~~r~ 164 (320)
||+|+. .+...+ .+.+-+.+ +++..+++..|...+.+.+-+ +.-+.++|.-..|..++
T Consensus 171 viiTGs----------TlvN~T-------l~~LL~~~-~~a~~vvl~GPS~p~~P~lf~----~Gv~~lag~~v~d~~~~ 228 (251)
T d2h1qa1 171 VYITCA----------SVVDKT-------LPRLLELS-RNARRITLVGPGTPLAPVLFE----HGLQELSGFMVKDNARA 228 (251)
T ss_dssp EEEETH----------HHHHTC-------HHHHHHHT-TTSSEEEEESTTCCCCGGGGG----TTCSEEEEEEESCHHHH
T ss_pred EEEEec----------hhhcCC-------HHHHHHhC-CcCCEEEEECCCcccCHHHHh----cCCceEeEEEEeCHHHH
Confidence 999963 122222 33333344 345445554566555544322 23334666667899899
Q ss_pred HHHHHHH
Q 020875 165 LGQISEK 171 (320)
Q Consensus 165 ~~~~a~~ 171 (320)
.+.+++=
T Consensus 229 ~~~i~~G 235 (251)
T d2h1qa1 229 FRIVAGA 235 (251)
T ss_dssp HHHHTTS
T ss_pred HHHHHcC
Confidence 8877643
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.57 E-value=0.043 Score=43.50 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=28.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
|||+|+| +|++|..+|..|...+.- .+|.++++..
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~~~-----~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLHPD-----AEIQWYEKGD 35 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHCTT-----SEEEEEESSS
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCC-----CeEEEEeCCC
Confidence 7999999 599999999999876431 3899998753
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.021 Score=48.86 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=62.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc----CcCCCCCCeEEEEEecCCccchhHHHHHHHhcc-cCCCCcc--eEEeCChhhh
Q 020875 6 VRVLVTGAAGQIGYALVPMIARG----VMLGTDQPVILHMLDIPPAAEALNGVKMELVDA-AFPLLKG--VVATTDAVEA 78 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~----~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~-~~~~~~~--v~~~~~~~~a 78 (320)
.||++.| +|.-|..++..|... |+.-......+.++|.+. .+.....|..+. ..++..+ -....++.++
T Consensus 26 ~kiv~~G-AGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G---lv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~ 101 (294)
T d1pj3a1 26 HKILFLG-AGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG---LLVKGRKAKIDSYQEPFTHSAPESIPDTFEDA 101 (294)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE---ECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHH
T ss_pred cEEEEEC-ccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC---CccCCCCcccHHHHHHhhccccccchhHHHHH
Confidence 5999999 599999998876543 321000012599999742 110000111111 1111110 0112357777
Q ss_pred cC--CCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 79 CT--GVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 79 l~--~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
++ +.|++|-+.+.+. . +.+++++.|.+.+ ++.+|+-.|||..
T Consensus 102 i~~~kptvliG~S~~~g---~-----------ft~evi~~Ma~~~-~~PIIFaLSNPt~ 145 (294)
T d1pj3a1 102 VNILKPSTIIGVAGAGR---L-----------FTPDVIRAMASIN-ERPVIFALSNPTA 145 (294)
T ss_dssp HHHHCCSEEEECCCSSC---C-----------SCHHHHHHHHHHC-SSCEEEECCSSGG
T ss_pred HHhcCCceEEEecCCCC---c-----------CCHHHHHHHHhcC-CCcEEEEccCCCC
Confidence 65 7888887765442 1 1256777787787 6788888999974
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.54 E-value=0.037 Score=43.80 Aligned_cols=77 Identities=18% Similarity=0.137 Sum_probs=45.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEE-EecCCccchhHHHHHHHhccc--CC-------CCcceEEeCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHM-LDIPPAAEALNGVKMELVDAA--FP-------LLKGVVATTD 74 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l-~D~~~~~~~~~~~~~dl~~~~--~~-------~~~~v~~~~~ 74 (320)
|.||+|.| .|.||..++..+.+++-+ +++. -|..+.. .....-..+.. .. ....+.+...
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~di------evVaInd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~ 70 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDM------KLVGVAKTSPNY---EAFIAHRRGIRIYVPQQSIKKFEESGIPVAGT 70 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTE------EEEEEECSSCSH---HHHHHHHTTCCEECCGGGHHHHHTTTCCCCCC
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCC------EEEEEECCCCcH---HHHHhcccCcceeccCccceeccccceecCCc
Confidence 45999999 799999999988876532 6654 4554321 11111011100 00 0123334446
Q ss_pred hhhhcCCCcEEEEeCCC
Q 020875 75 AVEACTGVNIAVMVGGF 91 (320)
Q Consensus 75 ~~~al~~aDvVi~~ag~ 91 (320)
+...+.++|+||-+.|.
T Consensus 71 ~~~~~~~vDiViecTG~ 87 (178)
T d1b7go1 71 VEDLIKTSDIVVDTTPN 87 (178)
T ss_dssp HHHHHHHCSEEEECCST
T ss_pred hhhhhhcCCEEEECCCC
Confidence 67777899999998764
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.53 E-value=0.032 Score=45.25 Aligned_cols=42 Identities=17% Similarity=0.375 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+|.||+||| +|.-|.+.|+.|.++|+.......+|.++|..+
T Consensus 1 rp~~VaVIG-aGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~ 42 (239)
T d1lqta2 1 RPYYIAIVG-SGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP 42 (239)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred CCcEEEEEC-cCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence 478999999 699999999999998752111123799999853
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=93.44 E-value=0.031 Score=46.47 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=28.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
-.|+||| +|.+|.++|+.|+++|. .|+++|..
T Consensus 5 ~DvvIIG-aGi~Gls~A~~La~~G~-------~V~vlE~~ 36 (276)
T d1ryia1 5 YEAVVIG-GGIIGSAIAYYLAKENK-------NTALFESG 36 (276)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSS
T ss_pred CCEEEEC-cCHHHHHHHHHHHHCCC-------cEEEEeCC
Confidence 3599999 59999999999999996 79999975
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=93.43 E-value=0.12 Score=41.50 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+..+|+|-| .|.||++++..|.+.|. .|+..|.+
T Consensus 26 ~gk~v~IqG-~G~VG~~~A~~L~~~Ga-------kvvv~d~d 59 (201)
T d1c1da1 26 DGLTVLVQG-LGAVGGSLASLAAEAGA-------QLLVADTD 59 (201)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEecch
Confidence 347999999 79999999999999986 78999986
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.22 Score=39.05 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=47.1
Q ss_pred CCEEEEEc-CCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCc
Q 020875 5 PVRVLVTG-AAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN 83 (320)
Q Consensus 5 ~~kI~IiG-A~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aD 83 (320)
..||+++| +-..|...++..+..-|. +++++-..+- ..-......+..........+..+.+..++++++|
T Consensus 5 ~l~i~~vGD~~nnv~~Sli~~~~~~g~-------~l~~~~P~~~-~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aD 76 (183)
T d1duvg2 5 EMTLVYAGDARNNMGNSMLEAAALTGL-------DLRLVAPQAC-WPEAALVTECRALAQQNGGNITLTEDVAKGVEGAD 76 (183)
T ss_dssp GCEEEEESCTTSHHHHHHHHHHHHHCC-------EEEEECCGGG-CCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCS
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCC-------EEEEEechHh-hhhHHHHHHHHHHHHhcCCceEEEechhhccccCC
Confidence 47999999 313677777777776675 8888876321 00011111111111112346777889999999999
Q ss_pred EEEEeC
Q 020875 84 IAVMVG 89 (320)
Q Consensus 84 vVi~~a 89 (320)
+|....
T Consensus 77 vvyt~~ 82 (183)
T d1duvg2 77 FIYTDV 82 (183)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 988764
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.35 E-value=0.064 Score=40.03 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.+.||+|+| +|++|.-+|..|...|. +|.+++..
T Consensus 34 ~~k~v~VIG-gG~iG~E~A~~l~~~g~-------~Vtvie~~ 67 (133)
T d1q1ra2 34 ADNRLVVIG-GGYIGLEVAATAIKANM-------HVTLLDTA 67 (133)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSS
T ss_pred cCCEEEEEC-CchHHHHHHHHHHhhCc-------ceeeeeec
Confidence 357999999 59999999999999887 89999975
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=93.32 E-value=0.33 Score=39.37 Aligned_cols=102 Identities=21% Similarity=0.290 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC----cc--chhHHHHHHHhcccCCCCcceEEeCChhh
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP----AA--EALNGVKMELVDAAFPLLKGVVATTDAVE 77 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~----~~--~~~~~~~~dl~~~~~~~~~~v~~~~~~~~ 77 (320)
+..||++.| +|..|..++..|...+. .++.++|++. ++ ..+.....++.+...+ .....++.+
T Consensus 25 ~d~riv~~G-AGsAg~gia~~l~~~~~------~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~----~~~~~~l~~ 93 (222)
T d1vl6a1 25 EEVKVVVNG-IGAAGYNIVKFLLDLGV------KNVVAVDRKGILNENDPETCLNEYHLEIARITNP----ERLSGDLET 93 (222)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHHTC------CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TCCCSCHHH
T ss_pred hhcEEEEEC-hHHHHHHHHHHHHHhcc------cceEeecceeEEEcCcccccccHHHHHHHhhhcc----hhhhcchHh
Confidence 346999999 59999999999988776 3899999852 11 1122222222222111 112236788
Q ss_pred hcCCCcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCcch
Q 020875 78 ACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPAN 135 (320)
Q Consensus 78 al~~aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP~~ 135 (320)
+++++++++-+.. ++.-+. +.+++.+ +..+++-.|||..
T Consensus 94 ~l~g~~~~~g~~~----~~~~~~--------------e~m~~~~-~rPIIFpLSNPt~ 132 (222)
T d1vl6a1 94 ALEGADFFIGVSR----GNILKP--------------EWIKKMS-RKPVIFALANPVP 132 (222)
T ss_dssp HHTTCSEEEECSC----SSCSCH--------------HHHTTSC-SSCEEEECCSSSC
T ss_pred hccCcceeccccc----cccccH--------------HHHhhcC-CCCEEEecCCCcc
Confidence 9999998766542 122111 2355556 5667777899963
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.076 Score=41.03 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=42.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeC---ChhhhcCCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATT---DAVEACTGV 82 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~---~~~~al~~a 82 (320)
.+|+|+| +|.+|...+..+...|. +++.+|.++ ++.+ .+..+-- . .+..+. ......+++
T Consensus 32 ~~VlI~G-aG~vG~~a~qlak~~Ga-------~~i~~~~~~--~~~~-~a~~lGa-d-----~~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 32 KKVGVVG-IGGLGHMGIKLAHAMGA-------HVVAFTTSE--AKRE-AAKALGA-D-----EVVNSRNADEMAAHLKSF 94 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESSG--GGHH-HHHHHTC-S-----EEEETTCHHHHHTTTTCE
T ss_pred CEEEEec-cchHHHHHHHHhhcccc-------cchhhccch--hHHH-HHhccCC-c-----EEEECchhhHHHHhcCCC
Confidence 6899999 59999988888877776 566788764 2322 2222210 0 011111 123334689
Q ss_pred cEEEEeCCCC
Q 020875 83 NIAVMVGGFP 92 (320)
Q Consensus 83 DvVi~~ag~~ 92 (320)
|+||.+.|.+
T Consensus 95 D~vid~~g~~ 104 (168)
T d1uufa2 95 DFILNTVAAP 104 (168)
T ss_dssp EEEEECCSSC
T ss_pred ceeeeeeecc
Confidence 9999998754
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.055 Score=45.27 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 3 ~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.++.||+||| +|.-|-..|..|.+.|+ +|.++..+
T Consensus 3 ~~~~kViVIG-aG~aGL~aA~~L~~~G~-------~V~VlEa~ 37 (449)
T d2dw4a2 3 KKTGKVIIIG-SGVSGLAAARQLQSFGM-------DVTLLEAR 37 (449)
T ss_dssp SCCCEEEEEC-CBHHHHHHHHHHHHTTC-------EEEEECSS
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhCCC-------CEEEEeCC
Confidence 3567999999 59999999999999997 89999864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.09 E-value=0.29 Score=37.41 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=28.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
..+|+|+| +|.+|...+..+...|. +|+.+|.++
T Consensus 27 g~~vlV~G-~G~vG~~~~~~ak~~Ga-------~vi~v~~~~ 60 (170)
T d1e3ja2 27 GTTVLVIG-AGPIGLVSVLAAKAYGA-------FVVCTARSP 60 (170)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH
T ss_pred CCEEEEEc-ccccchhhHhhHhhhcc-------cccccchHH
Confidence 36899999 69999998888887775 799999874
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=92.98 E-value=0.22 Score=34.36 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=46.6
Q ss_pred CEEEEEcCCChhH-HHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 6 VRVLVTGAAGQIG-YALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 6 ~kI~IiGA~G~vG-~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
|||-++|- |-+| ++||..|.++|+ .|.-.|+.++ +.. ..|.+... .+... ...+.++++|+
T Consensus 2 ~~ihfiGI-gG~GMs~LA~~L~~~G~-------~VsGSD~~~~-~~t----~~L~~~Gi----~i~~g-h~~~~i~~~d~ 63 (89)
T d1j6ua1 2 MKIHFVGI-GGIGMSAVALHEFSNGN-------DVYGSNIEET-ERT----AYLRKLGI----PIFVP-HSADNWYDPDL 63 (89)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTC-------EEEEECSSCC-HHH----HHHHHTTC----CEESS-CCTTSCCCCSE
T ss_pred cEEEEEeE-CHHHHHHHHHHHHhCCC-------eEEEEeCCCC-hhH----HHHHHCCC----eEEee-ecccccCCCCE
Confidence 79999995 5555 478889999998 8999998742 111 22443321 22221 23455789999
Q ss_pred EEEeCCCCC
Q 020875 85 AVMVGGFPR 93 (320)
Q Consensus 85 Vi~~ag~~~ 93 (320)
||.+.+++.
T Consensus 64 vV~SsAI~~ 72 (89)
T d1j6ua1 64 VIKTPAVRD 72 (89)
T ss_dssp EEECTTCCT
T ss_pred EEEecCcCC
Confidence 999988774
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.95 E-value=0.087 Score=38.87 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=31.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+..|.+++|+| +|++|.-+|..+...|. ++.++...+
T Consensus 23 ~~~p~~vvIiG-gG~IG~E~A~~~~~~G~-------~Vtive~~~ 59 (125)
T d1ojta2 23 KEVPGKLLIIG-GGIIGLEMGTVYSTLGS-------RLDVVEMMD 59 (125)
T ss_dssp CCCCSEEEEES-CSHHHHHHHHHHHHHTC-------EEEEECSSS
T ss_pred cccCCeEEEEC-CCHHHHHHHHHhhcCCC-------EEEEEEeec
Confidence 45678999999 59999999999998886 899998753
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=92.94 E-value=0.063 Score=36.29 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=29.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+++|+|+| +|..|+-++......|+ +++.+|.++
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~-------~v~vldp~~ 34 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLGI-------AVWPVGLDA 34 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGTE-------EEEEECTTS
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCC-------EEEEEcCCC
Confidence 35899999 69999999988888787 899999764
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.88 E-value=0.15 Score=39.41 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=49.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
-++++|+| =|.+|..+|..+...|. .|.++++++ +.+... ..|. +.. ..+.++++.+|+
T Consensus 23 Gk~vvV~G-YG~vGrG~A~~~rg~Ga-------~V~V~E~DP----i~alqA-~mdG-------f~v-~~~~~a~~~aDi 81 (163)
T d1v8ba1 23 GKIVVICG-YGDVGKGCASSMKGLGA-------RVYITEIDP----ICAIQA-VMEG-------FNV-VTLDEIVDKGDF 81 (163)
T ss_dssp TSEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEECSCH----HHHHHH-HTTT-------CEE-CCHHHHTTTCSE
T ss_pred CCEEEEec-ccccchhHHHHHHhCCC-------EEEEEecCc----hhhHHH-HhcC-------Ccc-CchhHccccCcE
Confidence 36899999 69999999999999886 788999874 222111 1222 222 357899999999
Q ss_pred EEEeCCCC
Q 020875 85 AVMVGGFP 92 (320)
Q Consensus 85 Vi~~ag~~ 92 (320)
+|.+.|..
T Consensus 82 ~vTaTGn~ 89 (163)
T d1v8ba1 82 FITCTGNV 89 (163)
T ss_dssp EEECCSSS
T ss_pred EEEcCCCC
Confidence 99987754
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.84 E-value=0.065 Score=41.01 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=29.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+||+|+| +|++|..++..|.+.+.- .+|.+++..+
T Consensus 3 krivIvG-gG~~G~e~A~~l~~~~~~-----~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVG-GGTGGATAAKYIKLADPS-----IEVTLIEPNT 37 (186)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCTT-----SEEEEECSCS
T ss_pred CcEEEEC-ccHHHHHHHHHHHHcCCC-----CcEEEEECCC
Confidence 5999999 599999999999887641 3899998764
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.76 E-value=0.066 Score=43.36 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=30.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
...||.|+| .|.-|..++..|...++.+ .+.+.+|.+
T Consensus 14 ~~~ki~ViG-vGGaG~n~v~~l~~~~~~~----v~~iainTD 50 (209)
T d2vapa1 14 TKAKITVVG-CGGAGNNTITRLKMEGIEG----AKTVAINTD 50 (209)
T ss_dssp TCCCEEEEE-EHHHHHHHHHHHHHHTCTT----EEEEEEESB
T ss_pred cCCcEEEEE-eCChHHHHHHHHHHcCCCc----eEEEEEeCC
Confidence 457999999 7999999999999887643 467777775
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.74 E-value=0.08 Score=43.13 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+.||+||| +|..|.+.|..|.++|+ ++.+++...
T Consensus 48 ~~k~VvIIG-aGpAGl~aA~~l~~~G~-------~v~l~E~~~ 82 (233)
T d1djqa3 48 NKDSVLIVG-AGPSGSEAARVLMESGY-------TVHLTDTAE 82 (233)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred CCceEEEEc-ccHHHHHHHHHHHHhcc-------ceeeEeecc
Confidence 458999999 59999999999999997 899999753
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.59 E-value=0.046 Score=42.65 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=28.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
..+|+|+||+|.+|...+..+...|. +++..+.++
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~G~-------~vi~~~~~~ 62 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAMGL-------RVLAAASRP 62 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTC-------EEEEEESSG
T ss_pred CCEEEEEeccccchhhhhhhhccccc-------ccccccccc
Confidence 35899999999999998888888886 677777653
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.57 E-value=0.056 Score=44.68 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=29.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.||+|+| +|.+|++++..|+..|. + +++|+|-+
T Consensus 31 ~~VliiG-~GglGs~va~~La~~Gv-g-----~i~lvD~D 63 (247)
T d1jw9b_ 31 SRVLIVG-LGGLGCAASQYLASAGV-G-----NLTLLDFD 63 (247)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTC-S-----EEEEECCC
T ss_pred CCEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEECCc
Confidence 6999999 69999999999999996 3 89999975
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.36 E-value=0.78 Score=39.11 Aligned_cols=31 Identities=10% Similarity=0.269 Sum_probs=25.1
Q ss_pred EEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 8 VLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 8 I~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.+||||+ ..+|..++..|++.|. +|++.++.
T Consensus 5 AlITGaa~s~GIG~aiA~~la~~GA-------~V~i~~~~ 37 (329)
T d1uh5a_ 5 CFIAGIGDTNGYGWGIAKELSKRNV-------KIIFGIWP 37 (329)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHTTC-------EEEEEECG
T ss_pred EEEeCCCCCChHHHHHHHHHHHcCC-------EEEEEeCc
Confidence 4577843 3799999999999997 88888765
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.10 E-value=0.1 Score=38.12 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=29.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+.+|+|+| +|++|.-+|..|...|. +|.++++.+
T Consensus 32 ~~~vvIiG-gG~iG~E~A~~l~~~g~-------~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIG-GGFIGLELAGNLAEAGY-------HVKLIHRGA 65 (122)
T ss_dssp HSEEEEEE-CSHHHHHHHHHHHHTTC-------EEEEECSSS
T ss_pred CCcEEEEC-CcHHHHHHHHHhhcccc-------eEEEEeccc
Confidence 36899999 59999999999999886 899999754
|
| >d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=92.05 E-value=0.91 Score=37.35 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEEecCCcc-CCCCceEEEEEEEEe-CCeEEEecCCCCChhhhh
Q 020875 250 SACDHIRDWVLGTPEGTWVSMGVYSDGSY-NVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMS 311 (320)
Q Consensus 250 a~~~~i~~~i~~~~~~~i~~~~v~~~g~y-g~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~ 311 (320)
.++.+|. ++.+ +++.++.+.|.-+|.- |+|.+++.=+||.++ +|+.- +.--+|.+....
T Consensus 135 ~a~~ii~-ai~~-~~~~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P-~~~g~lP~~~~~ 195 (253)
T d1up7a2 135 AAAHLIR-DLET-DEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHT-LSQGKGDHFALS 195 (253)
T ss_dssp HHHHHHH-HHHS-SSCEEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEE-BCCCCCCHHHHH
T ss_pred HHHHHHH-HHHc-CCCcEEEEeCCCcCcCCCCChhhheEEEEEecCCcccc-cccCCCcHHHHH
Confidence 3344444 5554 5678888888877864 799999999999999 66654 333456655443
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.95 E-value=0.096 Score=38.38 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=31.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+..|.+++|+| +|++|.-+|..+...|. +|.++.+.+
T Consensus 22 ~~~p~~~viiG-~G~iglE~A~~~~~~G~-------~Vtvi~~~~ 58 (123)
T d1dxla2 22 SEIPKKLVVIG-AGYIGLEMGSVWGRIGS-------EVTVVEFAS 58 (123)
T ss_dssp SSCCSEEEESC-CSHHHHHHHHHHHHHTC-------EEEEECSSS
T ss_pred cccCCeEEEEc-cchHHHHHHHHHHhcCC-------eEEEEEEcc
Confidence 34578999999 59999999999999886 899998754
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.91 E-value=0.17 Score=39.30 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=27.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.+|+|+||+|.||...+..+...|. +++..+.+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~-------~vi~~~~~ 59 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGA-------RIYTTAGS 59 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTC-------EEEEEESS
T ss_pred CEEEEECCCCCcccccchhhccccc-------cceeeecc
Confidence 6899999999999999988888776 66666654
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=91.88 E-value=0.15 Score=38.89 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHH
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME 57 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~d 57 (320)
+|+||+|.|++|.||.....-+.+..- ..+|..+--+.+-+++..++.+
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d-----~f~v~~lsa~~N~~~L~~q~~e 49 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNLD-----RYQVIALTANRNVKDLADAAKR 49 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTGG-----GEEEEEEEESSCHHHHHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCCC-----CcEEEEEEeCCCHHHHHHHHHh
Confidence 478999999999999998777765421 1267666655544555444433
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=91.74 E-value=0.08 Score=41.42 Aligned_cols=80 Identities=16% Similarity=0.104 Sum_probs=44.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccC-CC------CcceEEeCChh
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAF-PL------LKGVVATTDAV 76 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~-~~------~~~v~~~~~~~ 76 (320)
|.||+|-| -|.||..+...|.+++-+ +++ +-|+.+..........+...... +. ...+....+..
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di------~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~ 73 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDM------KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVD 73 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSE------EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHH
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCc------eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChh
Confidence 45999999 899999998888776532 665 44443321111111111110000 00 01233333456
Q ss_pred hhcCCCcEEEEeCCC
Q 020875 77 EACTGVNIAVMVGGF 91 (320)
Q Consensus 77 ~al~~aDvVi~~ag~ 91 (320)
.++.++|+||-+.|.
T Consensus 74 ~~~~~vDvViEcTG~ 88 (171)
T d1cf2o1 74 DMLDEADIVIDCTPE 88 (171)
T ss_dssp HHHHTCSEEEECCST
T ss_pred HhhcCCCEEEEccCC
Confidence 677899999998763
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=91.67 E-value=0.24 Score=37.92 Aligned_cols=78 Identities=15% Similarity=0.071 Sum_probs=48.2
Q ss_pred CCCEEEEEc-CCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTG-AAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiG-A~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
+..||+++| +...|-..++..+..-|. ++.+.-... -..-.................+..+.+..++++++
T Consensus 2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~-------~i~~~~P~~-~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~a 73 (161)
T d1vlva2 2 KGVKVVFMGDTRNNVATSLMIACAKMGM-------NFVACGPEE-LKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGA 73 (161)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHTTC-------EEEEESCGG-GCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTC
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHHcCC-------EEEEecchh-hhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhh
Confidence 346999999 434788888777777675 788777532 11001111111111111234678888999999999
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+|....
T Consensus 74 Dviyt~~ 80 (161)
T d1vlva2 74 DVVYTDV 80 (161)
T ss_dssp SEEEECC
T ss_pred hheeccc
Confidence 9999754
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.64 E-value=0.046 Score=44.20 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=22.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCc
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVM 30 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~ 30 (320)
|||+|+| +|-+|.+.|+.|+++|+
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYH 24 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHT
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCC
Confidence 7999999 59999999999999875
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=91.54 E-value=0.15 Score=36.88 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=29.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
+.+|+|+| +|++|.-+|..|...+. ++.++++.+
T Consensus 22 ~~~vvVvG-gG~ig~E~A~~l~~~g~-------~vt~i~~~~ 55 (121)
T d1mo9a2 22 GSTVVVVG-GSKTAVEYGCFFNATGR-------RTVMLVRTE 55 (121)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSSC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcch-------hheEeeccc
Confidence 47999999 59999999999998875 889998753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.54 E-value=0.19 Score=39.12 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=27.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+|+|+| +|.||...+..+...|.. .|..+|.++
T Consensus 29 ~~VlI~G-aG~vGl~~~q~ak~~Ga~------~Vi~~d~~~ 62 (174)
T d1jqba2 29 SSVVVIG-IGAVGLMGIAGAKLRGAG------RIIGVGSRP 62 (174)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHTTTCS------CEEEECCCH
T ss_pred CEEEEEc-CCcchhhhhhhhhccccc------ccccccchh
Confidence 5899999 599999888887777752 688999864
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.33 E-value=0.53 Score=35.99 Aligned_cols=76 Identities=11% Similarity=-0.025 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCcc--chhHHHHHHHhcccCCCCcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~--~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
+..||+++|-...|...++..|..-|. ++.+.-...-. +........... .....+..+.+..+++++
T Consensus 3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~-------~v~~~~P~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~ea~~~ 72 (163)
T d1pvva2 3 KGVKVVYVGDGNNVAHSLMIAGTKLGA-------DVVVATPEGYEPDEKVIKWAEQNAA---ESGGSFELLHDPVKAVKD 72 (163)
T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHTTC-------EEEEECCTTCCCCHHHHHHHHHHHH---HHTCEEEEESCHHHHTTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC-------eEEEecccccCCChHHHHHHHHhhh---cccceEEEecCHHHHhhh
Confidence 567999999866777777777766565 78888653210 111111111110 112356777889999999
Q ss_pred CcEEEEeC
Q 020875 82 VNIAVMVG 89 (320)
Q Consensus 82 aDvVi~~a 89 (320)
+|+|..+-
T Consensus 73 adviy~~~ 80 (163)
T d1pvva2 73 ADVIYTDV 80 (163)
T ss_dssp CSEEEECC
T ss_pred ccEEeecc
Confidence 99988753
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=91.29 E-value=0.086 Score=44.39 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=28.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.+|+||| +|-+|.+.|+.|+++|.. +|+|+|++
T Consensus 2 ~dViIIG-aGi~G~s~A~~La~~G~~------~V~liE~~ 34 (305)
T d1pj5a2 2 PRIVIIG-AGIVGTNLADELVTRGWN------NITVLDQG 34 (305)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTCC------CEEEECSS
T ss_pred CCEEEEC-cCHHHHHHHHHHHHcCCC------cEEEEeCC
Confidence 3799999 599999999999998852 69999975
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.27 E-value=0.077 Score=45.12 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=29.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
|.+|+||| +|..|..+|..|.+.|. +|.+++.+
T Consensus 1 M~dv~IIG-aG~sGl~~A~~L~~~g~-------~V~iiEk~ 33 (298)
T d1i8ta1 1 MYDYIIVG-SGLFGAVCANELKKLNK-------KVLVIEKR 33 (298)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHGGGTC-------CEEEECSS
T ss_pred CccEEEEC-CcHHHHHHHHHHHhCCC-------cEEEEECC
Confidence 45899999 59999999999998886 79999975
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.26 E-value=0.081 Score=42.30 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=28.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
||+||| +|..|.+.|..|.+.|+. +|.+++..
T Consensus 2 ~V~IIG-aG~aGL~aA~~L~~~G~~------~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVG-AGMSGISAAKRLSEAGIT------DLLILEAT 33 (347)
T ss_dssp CEEEEC-CBHHHHHHHHHHHHTTCC------CEEEECSS
T ss_pred CEEEEC-CcHHHHHHHHHHHhCCCC------cEEEEECC
Confidence 799999 599999999999999862 68999975
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.23 E-value=0.071 Score=44.57 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=29.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
||+|+| +|-+|..+|..|.+.|+ ++.++|..+
T Consensus 4 ~V~IvG-aGp~Gl~~A~~L~~~G~-------~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIG-AGPSGLLLGQLLHKAGI-------DNVILERQT 35 (292)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHHTC-------CEEEECSSC
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEeCCC
Confidence 799999 59999999999999997 799999864
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.19 E-value=0.58 Score=37.14 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=27.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+|-|+| -|.-|..++..|...++.+ .+...+|.+
T Consensus 3 ~IkViG-vGGaG~n~v~~~~~~~~~~----v~~iainTD 36 (198)
T d1ofua1 3 VIKVIG-VGGGGGNAVNHMAKNNVEG----VEFICANTD 36 (198)
T ss_dssp CEEEEE-EHHHHHHHHHHHHHTTCCS----EEEEEEESB
T ss_pred eEEEEE-ECchHHHHHHHHHHcCCCC----eEEEEEeCc
Confidence 688999 7999999999999887643 477777775
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.00 E-value=0.23 Score=37.95 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=28.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
..+|+|+| +|.+|...+..+...|. +|+.+|+++
T Consensus 28 g~~VlV~G-aG~vG~~~~~~ak~~G~-------~Vi~~~~~~ 61 (166)
T d1llua2 28 GQWVAISG-IGGLGHVAVQYARAMGL-------HVAAIDIDD 61 (166)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEEESCH
T ss_pred CCEEEEee-ccccHHHHHHHHHHcCC-------ccceecchh
Confidence 36899999 59999998888887775 899999864
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.68 E-value=0.47 Score=37.73 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=46.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCC--Ccce---------------
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL--LKGV--------------- 69 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~--~~~v--------------- 69 (320)
+|-|+| -|.-|..++..|.+.++.+ .+...+|.+. +.+ .-....... ..+.
T Consensus 3 ~IkViG-vGGaG~n~vn~~~~~~~~~----v~~iainTD~--~~L-----~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~ 70 (198)
T d1rq2a1 3 VIKVVG-IGGGGVNAVNRMIEQGLKG----VEFIAINTDA--QAL-----LMSDADVKLDVGRDSTRGLGAGADPEVGRK 70 (198)
T ss_dssp CEEEEE-EHHHHHHHHHHHHHTTCCS----EEEEEEESCH--HHH-----HHCCCSEEEECCTTTC-----CCCHHHHHH
T ss_pred eEEEEE-eCchHHHHHHHHHHcCCCC----ceEEEEcchH--HHH-----hcCCcchhhccccccccCCCcCcChhhhHh
Confidence 577899 7999999999999888643 4677777642 211 111111000 0000
Q ss_pred ---EEeCChhhhcCCCcEEEEeCCCCC
Q 020875 70 ---VATTDAVEACTGVNIAVMVGGFPR 93 (320)
Q Consensus 70 ---~~~~~~~~al~~aDvVi~~ag~~~ 93 (320)
.......++++++|+||++||...
T Consensus 71 aa~e~~~~I~~~l~~~d~vfi~AGlGG 97 (198)
T d1rq2a1 71 AAEDAKDEIEELLRGADMVFVTAGEGG 97 (198)
T ss_dssp HHHHTHHHHHHHHTTCSEEEEEEETTS
T ss_pred hHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 111235677899999999998753
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.64 E-value=0.12 Score=41.01 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=29.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.-|+||| +|..|.+.|..|+++|+ +|.+++.+.
T Consensus 6 yDviViG-aG~~Gl~~A~~La~~G~-------~V~vlE~~~ 38 (297)
T d2bcgg1 6 YDVIVLG-TGITECILSGLLSVDGK-------KVLHIDKQD 38 (297)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS
T ss_pred CCEEEEC-cCHHHHHHHHHHHHCCC-------CEEEEcCCC
Confidence 4589999 69999999999999997 799999863
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=90.53 E-value=0.22 Score=37.94 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=33.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHH
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL 58 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl 58 (320)
|+||+|.|++|+||.....-+.+..- ..+|..+--+.+-+.+..++.++
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d-----~f~v~~Lsa~~N~~~L~~q~~~f 49 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPE-----HFRVVALVAGKNVTRMVEQCLEF 49 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTT-----TEEEEEEEESSCHHHHHHHHHHH
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCC-----CcEEEEEEecCcHHHHHHHHHHH
Confidence 34899999999999998877766421 12666665555555565555544
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=90.37 E-value=0.28 Score=39.96 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=39.7
Q ss_pred CCCCCEEEEEcCCCh----hHHHHHHHHHhc-CcCCCCCCeEEE-EEecCCccchhHHHHHHHhcccCCCCcceEEeCCh
Q 020875 2 AKEPVRVLVTGAAGQ----IGYALVPMIARG-VMLGTDQPVILH-MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA 75 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~----vG~~la~~L~~~-~~~~~~~~~ev~-l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~ 75 (320)
+.+|+||+|+| +|. ++...+..+... +. .+|+ ++|++. ++++.....+. ........++
T Consensus 13 ~~k~irvgiIG-~G~~~~~~~~~h~~ai~~~~~~------~~ivav~d~~~--~~~~~~~~~~~------~~~~~~~~~~ 77 (237)
T d2nvwa1 13 SSRPIRVGFVG-LTSGKSWVAKTHFLAIQQLSSQ------FQIVALYNPTL--KSSLQTIEQLQ------LKHATGFDSL 77 (237)
T ss_dssp GGCCEEEEEEC-CCSTTSHHHHTHHHHHHHTTTT------EEEEEEECSCH--HHHHHHHHHTT------CTTCEEESCH
T ss_pred CCCCeEEEEEe-cCccccHHHHHHHHHHHhcCCC------eEEEEEEcCCH--HHHHHHHHhcc------cccceeecch
Confidence 34678999999 465 444444455443 22 2665 788763 33332222111 1123334566
Q ss_pred hhhcC--CCcEEEEeC
Q 020875 76 VEACT--GVNIAVMVG 89 (320)
Q Consensus 76 ~~al~--~aDvVi~~a 89 (320)
.+.++ +.|+|+++.
T Consensus 78 ~~l~~~~~iD~V~i~t 93 (237)
T d2nvwa1 78 ESFAQYKDIDMIVVSV 93 (237)
T ss_dssp HHHHHCTTCSEEEECS
T ss_pred hhcccccccceeeccC
Confidence 66664 678888874
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.20 E-value=0.17 Score=40.71 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=27.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.||+||| +|..|.+.|..|...+. + .+|.++|..+
T Consensus 2 ~kv~iIG-aGpaGl~aA~~L~~~~~-~----~~V~v~e~~~ 36 (230)
T d1cjca2 2 PQICVVG-SGPAGFYTAQHLLKHHS-R----AHVDIYEKQL 36 (230)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCS-S----CEEEEECSSS
T ss_pred CeEEEEC-ccHHHHHHHHHHHhcCC-C----CeEEEEeCCC
Confidence 4999999 59999999999986532 1 1899999763
|
| >d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=90.13 E-value=2.3 Score=35.73 Aligned_cols=55 Identities=11% Similarity=0.066 Sum_probs=38.5
Q ss_pred HHHHhCCCCCcEEEEEEecCCc-cCCCCceEEEEEEEEe-CCeEEEecCCCCChhhhh
Q 020875 256 RDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMS 311 (320)
Q Consensus 256 ~~~i~~~~~~~i~~~~v~~~g~-yg~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~ 311 (320)
..+|.+ +++.++.+.|.-+|. -++|.|.+.=+||+|+ +|+.-+--...|-+.-++
T Consensus 188 i~ai~~-~~~~~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~~lP~~~~~ 244 (308)
T d1obba2 188 IDALLN-DNKARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLPDRVVK 244 (308)
T ss_dssp HHHHHH-CCCEEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCCHHHHH
T ss_pred HHHHHc-CCCeEEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCCCCChHHHH
Confidence 345554 567888899987786 4789999999999999 776644212345554443
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=90.09 E-value=0.12 Score=42.80 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=28.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.-|+||| +|.+|...|+.|+++|+ +|+|+|..
T Consensus 4 yDvvIIG-aGi~Gls~A~~La~~G~-------~V~viE~~ 35 (281)
T d2gf3a1 4 FDVIVVG-AGSMGMAAGYQLAKQGV-------KTLLVDAF 35 (281)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSS
T ss_pred CCEEEEC-cCHHHHHHHHHHHHCCC-------cEEEEeCC
Confidence 3589999 59999999999999997 79999974
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=90.01 E-value=0.31 Score=35.02 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=29.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+..|.||+|+| +|++|.-+|..|...+..+ .+|.++++.
T Consensus 17 ~~~p~~v~ivG-gG~ig~E~A~~l~~l~~~~----~~Vtli~~~ 55 (117)
T d1aoga2 17 PEPPRRVLTVG-GGFISVEFAGIFNAYKPKD----GQVTLCYRG 55 (117)
T ss_dssp SSCCSEEEEEC-SSHHHHHHHHHHHHHCCTT----CEEEEEESS
T ss_pred hhcCCeEEEEC-CcHHHHHHHHHhhhcccCC----cEEEEEecc
Confidence 34578999999 5999999998776544322 278889875
|
| >d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.89 E-value=2.1 Score=35.27 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCCCcEEEEEEecCCcc-CCCCceEEEEEEEEe-CCeEEEecCCCCChhhhhcc
Q 020875 251 ACDHIRDWVLGTPEGTWVSMGVYSDGSY-NVPAGLIYSFPVTCR-NGEWTIVQGTDAILYPMSFL 313 (320)
Q Consensus 251 ~~~~i~~~i~~~~~~~i~~~~v~~~g~y-g~~~~v~~s~P~~i~-~G~~~~~~~~~L~~~E~~~l 313 (320)
++.+|. ++.+ +++.++.+.|.-+|.- ++|.+++.=+||.++ +|+.-+ .--+|.+..+..+
T Consensus 148 a~~ii~-ai~~-~~~~~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~-~~g~lP~~~~~Li 209 (270)
T d1s6ya2 148 ACSLIS-SIYN-DKRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPI-AVGDLPVAVRGLV 209 (270)
T ss_dssp HHHHHH-HHHH-TCCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEEC-CCBCCCHHHHHHH
T ss_pred HHHHHH-HHhc-CCCeEEEEECCCCCcCCCCCccceEEEEEEEECCceEee-ecCCCcHHHHHHH
Confidence 344444 4554 4678888888877763 699999999999999 776543 3446777665543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=89.81 E-value=0.69 Score=37.58 Aligned_cols=66 Identities=20% Similarity=0.136 Sum_probs=43.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhc-CCCc
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEAC-TGVN 83 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al-~~aD 83 (320)
.++|+|-| .|.||++++..|.+.|. .++..|.+. ..+.....+. .. ... +..+.+ .+||
T Consensus 39 g~~v~IqG-~GnVG~~~a~~L~~~Ga-------kvv~~d~~~--~~~~~~~~~~--g~-------~~~-~~~~~~~~~cD 98 (230)
T d1leha1 39 GLAVSVQG-LGNVAKALCKKLNTEGA-------KLVVTDVNK--AAVSAAVAEE--GA-------DAV-APNAIYGVTCD 98 (230)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-------EEEEECSCH--HHHHHHHHHH--CC-------EEC-CGGGTTTCCCS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEeecccH--HHHHHHHHhc--CC-------ccc-CCccccccccc
Confidence 47999999 79999999999999886 788888763 3332211111 10 111 222333 4899
Q ss_pred EEEEeCC
Q 020875 84 IAVMVGG 90 (320)
Q Consensus 84 vVi~~ag 90 (320)
+.+=+|.
T Consensus 99 Il~PcA~ 105 (230)
T d1leha1 99 IFAPCAL 105 (230)
T ss_dssp EEEECSC
T ss_pred Eeccccc
Confidence 9998874
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=89.79 E-value=0.33 Score=34.75 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=28.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+..|.||+|+| +|++|.-+|..|......+ .+|.++.+.
T Consensus 15 ~~~p~~v~IiG-gG~ig~E~A~~l~~~~~~g----~~Vtli~~~ 53 (117)
T d1feca2 15 DEAPKRALCVG-GGYISIEFAGIFNAYKARG----GQVDLAYRG 53 (117)
T ss_dssp SSCCSEEEEEC-SSHHHHHHHHHHHHHSCTT----CEEEEEESS
T ss_pred cccCCeEEEEC-CChHHHHHHHHhHhhcccc----cccceeccc
Confidence 34578999999 5999999997766542222 388889875
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=89.50 E-value=0.29 Score=38.02 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=28.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+|+|+|| |.||...+..+...|.. .|+.+|+++
T Consensus 30 ~~VlV~Ga-G~iG~~~~~~ak~~Ga~------~Vi~~~~~~ 63 (182)
T d1vj0a2 30 KTVVIQGA-GPLGLFGVVIARSLGAE------NVIVIAGSP 63 (182)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTBS------EEEEEESCH
T ss_pred CEEEEECC-Cccchhheecccccccc------ccccccccc
Confidence 69999995 99999888888877752 789999864
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=89.12 E-value=0.6 Score=36.06 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=28.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.+|+|+||+|.||...+......|. +++..+.+
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~Ga-------~vi~~~~~ 63 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLKGC-------KVVGAAGS 63 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred CEEEEEeCCCchhHHHHHHHHccCC-------EEEEeCCC
Confidence 6899999999999999988888886 77777765
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.74 E-value=0.15 Score=45.88 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=29.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.||+|+| +|.+|+.++..|+..|. + ++.|+|.+
T Consensus 38 ~kVlvvG-~GglG~ei~k~L~~~Gv-g-----~i~lvD~D 70 (426)
T d1yovb1 38 CKVLVIG-AGGLGCELLKNLALSGF-R-----QIHVIDMD 70 (426)
T ss_dssp CCEEEEC-SSTTHHHHHHHHHTTTC-C-----CEEEECCC
T ss_pred CeEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEEECC
Confidence 6999999 59999999999999986 3 79999974
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=88.67 E-value=0.19 Score=42.65 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=29.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
..|+||| +|..|-..+..|.+.|+ +++++|..+
T Consensus 8 ~dV~IIG-AG~sGl~~a~~L~~~G~-------~v~i~Ek~~ 40 (298)
T d1w4xa1 8 VDVLVVG-AGFSGLYALYRLRELGR-------SVHVIETAG 40 (298)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS
T ss_pred CCEEEEC-ccHHHHHHHHHHHhCCC-------CEEEEEcCC
Confidence 6899999 59999999999999887 799999864
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=88.30 E-value=0.069 Score=38.18 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=20.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGV 29 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~ 29 (320)
.+||+|+| +|.-|..++..|....
T Consensus 32 gK~VlVVG-~g~Sa~dia~~l~~~a 55 (107)
T d2gv8a2 32 GESVLVVG-GASSANDLVRHLTPVA 55 (107)
T ss_dssp TCCEEEEC-SSHHHHHHHHHHTTTS
T ss_pred CCeEEEEC-CCCCHHHHHHHHHHhc
Confidence 47999999 6999999999987543
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=88.22 E-value=0.28 Score=32.79 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+..+|+|.||+|.||+..+..+...|. +|.....+
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~-------~Vi~~t~s 65 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGY-------QVVAVSGR 65 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTC-------CEEEEESC
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCC-------eEEEEECC
Confidence 347899999999999999888777776 67666654
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.55 E-value=0.3 Score=36.41 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC
Q 020875 7 RVLVTGAAGQIGYALVPMIARGV 29 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~ 29 (320)
||+|+||+|.+|+.++..+.+..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~ 23 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAAD 23 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHST
T ss_pred CEEEECCCCHHHHHHHHHHHhCC
Confidence 89999999999999998887654
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.94 E-value=4.4 Score=29.71 Aligned_cols=80 Identities=5% Similarity=0.005 Sum_probs=51.1
Q ss_pred CCEEEEEcCC---ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC
Q 020875 5 PVRVLVTGAA---GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 5 ~~kI~IiGA~---G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
+++|+|+||+ +..|..++..|.+.|+ +|+.+..+. +.+.| .....++.+.-..
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~-------~v~pVnP~~--~~i~G---------------~~~~~sl~dlp~~ 74 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGY-------DVYPVNPKY--EEVLG---------------RKCYPSVLDIPDK 74 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTC-------EEEEECTTC--SEETT---------------EECBSSGGGCSSC
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCC-------EEEEECCcc--cccCC---------------CcccccccccCcc
Confidence 5689999988 6899999999999887 788887542 11211 1112244333346
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCe
Q 020875 82 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125 (320)
Q Consensus 82 aDvVi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~ 125 (320)
.|+|++... ...+.++++.+.+.+ ..+
T Consensus 75 iD~v~i~vp----------------~~~~~~~~~e~~~~g-~k~ 101 (139)
T d2d59a1 75 IEVVDLFVK----------------PKLTMEYVEQAIKKG-AKV 101 (139)
T ss_dssp CSEEEECSC----------------HHHHHHHHHHHHHHT-CSE
T ss_pred ceEEEEEeC----------------HHHHHHHHHHHHHhC-CCE
Confidence 899888742 234556666666666 443
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=86.92 E-value=1.3 Score=33.17 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=42.9
Q ss_pred CCEEEEEcCCCh--hHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGAAGQ--IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA~G~--vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
..||+++|=..+ |...++..+..-|. +++++-.++ ..... .++.+ ....++..+++..++++++
T Consensus 3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~-------~~~~~~p~~---~~~~~-~~~~~---~~~~~~~~~~d~~eai~~a 68 (153)
T d1pg5a2 3 GLVFALLGDLKYARTVNSLLRILTRFRP-------KLVYLISPQ---LLRAR-KEILD---ELNYPVKEVENPFEVINEV 68 (153)
T ss_dssp TCEEEEEECCSSCHHHHHHHHHGGGSCC-------SEEEEECCG---GGCCC-HHHHT---TCCSCEEEESCGGGTGGGC
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHcCC-------eeEEEeccc---ccccc-hhhcc---cCCCeEEEEeCHHHHhhcC
Confidence 479999995333 88888777776564 444443321 11100 01111 1234677888999999999
Q ss_pred cEEEEe
Q 020875 83 NIAVMV 88 (320)
Q Consensus 83 DvVi~~ 88 (320)
|+|..+
T Consensus 69 Dvvy~~ 74 (153)
T d1pg5a2 69 DVLYVT 74 (153)
T ss_dssp SEEEEE
T ss_pred CeEEEe
Confidence 998876
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.81 E-value=3.5 Score=29.81 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=27.9
Q ss_pred CCCEEEEEcCC---ChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 4 EPVRVLVTGAA---GQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 4 ~~~kI~IiGA~---G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
+|.+|+|+||+ +..|..+...|...+ .+ +|..+...
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g-----~v~pVnP~ 45 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KG-----KVYPVNIK 45 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SS-----EEEEECSS
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcC-CC-----cEEEeccC
Confidence 57899999998 889988888876654 33 78777754
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.77 E-value=0.13 Score=40.34 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=30.9
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 1 m~~~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
|...+.+|+||| +|..|...|..|.+.|+ +++++|..
T Consensus 1 m~~~~~~VvIIG-gGpaGl~aA~~~ar~g~-------~v~vie~~ 37 (192)
T d1vdca1 1 LETHNTRLCIVG-SGPAAHTAAIYAARAEL-------KPLLFEGW 37 (192)
T ss_dssp CEEEEEEEEEEC-CSHHHHHHHHHHHHTTC-------CCEEECCS
T ss_pred CCcccceEEEEC-CCHHHHHHHHHHHHcCC-------cEEEEEee
Confidence 555678999999 59999999999999887 67888854
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.37 E-value=0.81 Score=34.49 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=27.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
..+|+|.| +|.+|...+..+...|. ++...|.++
T Consensus 28 g~~vlv~G-~G~iG~~a~~~a~~~g~-------~v~~~~~~~ 61 (168)
T d1rjwa2 28 GEWVAIYG-IGGLGHVAVQYAKAMGL-------NVVAVDIGD 61 (168)
T ss_dssp TCEEEEEC-CSTTHHHHHHHHHHTTC-------EEEEECSCH
T ss_pred CCEEEEee-cccchhhhhHHHhcCCC-------eEeccCCCH
Confidence 35899988 59999988777777775 788888763
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.36 E-value=0.86 Score=34.88 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=27.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+|+|+|+ |.+|...+..+...|.. .+...|.++
T Consensus 30 ~~VlI~G~-G~iG~~~~~~ak~~g~~------~v~~~~~~~ 63 (174)
T d1f8fa2 30 SSFVTWGA-GAVGLSALLAAKVCGAS------IIIAVDIVE 63 (174)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHHTCS------EEEEEESCH
T ss_pred CEEEEeCC-CHHHhhhhhcccccccc------eeeeeccHH
Confidence 58999995 99999998888777752 677788763
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.07 E-value=0.36 Score=36.40 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=25.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
.||+|+| +|++|..++..|.+ +. +|.++++.
T Consensus 1 ~rVvIIG-gG~~G~e~A~~l~~-~~-------~Vtvv~~~ 31 (167)
T d1xhca1 1 SKVVIVG-NGPGGFELAKQLSQ-TY-------EVTVIDKE 31 (167)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTT-TS-------EEEEECSS
T ss_pred CeEEEEC-CcHHHHHHHHHHHc-CC-------CEEEEecc
Confidence 3899999 59999999988854 33 78888864
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=86.03 E-value=0.71 Score=33.46 Aligned_cols=95 Identities=7% Similarity=0.103 Sum_probs=52.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCC-CCcceEEeCCh-hhhcCCCcE
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP-LLKGVVATTDA-VEACTGVNI 84 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~-~~~~v~~~~~~-~~al~~aDv 84 (320)
+|.|+| .|.+|..++..|.. . ++.++|.++ ++.+ .+.+.... ..++.+....+ ...+.+|+.
T Consensus 2 HivI~G-~g~~g~~l~~~L~~--~-------~i~vi~~d~--~~~~----~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~ 65 (129)
T d2fy8a1 2 HVVICG-WSESTLECLRELRG--S-------EVFVLAEDE--NVRK----KVLRSGANFVHGDPTRVSDLEKANVRGARA 65 (129)
T ss_dssp CEEEES-CCHHHHHHHHTSCG--G-------GEEEEESCT--THHH----HHHHTTCEEEESCTTSHHHHHHTTCTTCSE
T ss_pred EEEEEC-CCHHHHHHHHHHcC--C-------CCEEEEcch--HHHH----HHHhcCccccccccCCHHHHHHhhhhcCcE
Confidence 688999 69999999988743 2 467788764 3322 12211111 01111111112 223678999
Q ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHhhhcCCCeEEEEEcCc
Q 020875 85 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP 133 (320)
Q Consensus 85 Vi~~ag~~~~~~~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~snP 133 (320)
+|++.. .+ ..|.. ++..+++.. |+..++..++-
T Consensus 66 vi~~~~------~d-----~~n~~----~~~~~r~~~-~~~~iia~~~~ 98 (129)
T d2fy8a1 66 VIVNLE------SD-----SETIH----CILGIRKID-ESVRIIAEAER 98 (129)
T ss_dssp EEECCS------SH-----HHHHH----HHHHHHHHC-SSSCEEEECSS
T ss_pred EEEecc------ch-----hhhHH----HHHHHHHHC-CCceEEEEEcC
Confidence 998642 11 23333 445566766 77777766653
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=85.77 E-value=0.23 Score=40.57 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=29.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
..|.||| +|..|...|..|.+.|+ +|.++|..+
T Consensus 5 ~DViIIG-aG~aGl~aA~~la~~G~-------~V~vlEk~~ 37 (253)
T d2gqfa1 5 SENIIIG-AGAAGLFCAAQLAKLGK-------SVTVFDNGK 37 (253)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS
T ss_pred CcEEEEC-cCHHHHHHHHHHHHCCC-------cEEEEecCC
Confidence 5799999 59999999999999987 799999864
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=85.59 E-value=0.97 Score=34.77 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=28.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+|+|+| +|.||...+..+...|.. .|+..|.++
T Consensus 30 ~~VlV~G-~G~iGl~a~~~ak~~Ga~------~Vi~~d~~~ 63 (174)
T d1e3ia2 30 STCAVFG-LGCVGLSAIIGCKIAGAS------RIIAIDING 63 (174)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCS------EEEEECSCG
T ss_pred CEEEEEC-CChHHHHHHHHHHHhCCc------eeeeeccch
Confidence 6899999 699999988888877752 788899874
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.23 E-value=0.36 Score=40.43 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=27.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 8 VLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 8 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
|+||| +|..|...|..|.+.|+ +|.+++..
T Consensus 2 ViVIG-aG~aGL~aA~~L~~~G~-------~V~VlE~~ 31 (383)
T d2v5za1 2 VVVVG-GGISGMAAAKLLHDSGL-------NVVVLEAR 31 (383)
T ss_dssp EEEEC-CBHHHHHHHHHHHHTTC-------CEEEEESS
T ss_pred EEEEC-CCHHHHHHHHHHHhCCC-------CEEEEecC
Confidence 78999 59999999999999997 79999864
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=85.00 E-value=1.7 Score=32.65 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=43.1
Q ss_pred CCEEEEEcC--CChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 5 PVRVLVTGA--AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 5 ~~kI~IiGA--~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
.+||+++|= .+.|...++..+..-|. ++++....+ +. .. ...+....++.++++++
T Consensus 3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~-------~~~i~~P~~----~~-------~~----~~~~~~~~~~~ea~~~a 60 (151)
T d2at2a2 3 GLTVSIHGDIKHSRVARSNAEVLTRLGA-------RVLFSGPSE----WQ-------DE----ENTFGTYVSMDEAVESS 60 (151)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHcCC-------cccccCCch----hh-------cc----ccceeEEEechhccccC
Confidence 579999995 45699988888877665 677666431 11 00 11344555788999999
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+|..+-
T Consensus 61 Dviy~~r 67 (151)
T d2at2a2 61 DVVMLLR 67 (151)
T ss_pred ceeeeeE
Confidence 9998763
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=84.94 E-value=0.41 Score=38.54 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=28.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
-|+||| +|..|...|..|.+.|+ .|.|+|...
T Consensus 4 DViIIG-aG~aGl~aA~~la~~G~-------~V~liEk~~ 35 (251)
T d2i0za1 4 DVIVIG-GGPSGLMAAIGAAEEGA-------NVLLLDKGN 35 (251)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTC-------CEEEECSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCC-------cEEEEeCCC
Confidence 489999 59999999999999997 799999763
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.21 E-value=0.78 Score=34.81 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=29.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+|+|+||+|.+|...+..+...|.. .|+..|.++
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~------~V~~~~~~~ 63 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGA------TIIGVDVRE 63 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCC------EEEEEESSH
T ss_pred CEEEEEeccccceeeeeecccccccc------cccccccch
Confidence 58999998899999888888877753 788999864
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=84.03 E-value=1.1 Score=36.02 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=43.5
Q ss_pred CCEEEEEcC----------------CChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcc
Q 020875 5 PVRVLVTGA----------------AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKG 68 (320)
Q Consensus 5 ~~kI~IiGA----------------~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~ 68 (320)
.+||+||+| +|..|.++|..+..+|. +|.|+--+.+...- +....
T Consensus 6 g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga-------~V~li~g~~~~~~p------------~~~~~ 66 (223)
T d1u7za_ 6 HLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-------NVTLVSGPVSLPTP------------PFVKR 66 (223)
T ss_dssp TCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-------EEEEEECSCCCCCC------------TTEEE
T ss_pred CCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCC-------chhhhhcccccCcc------------ccccc
Confidence 467777764 79999999999999997 88888754211000 00011
Q ss_pred eEEeC------ChhhhcCCCcEEEEeCCCC
Q 020875 69 VVATT------DAVEACTGVNIAVMVGGFP 92 (320)
Q Consensus 69 v~~~~------~~~~al~~aDvVi~~ag~~ 92 (320)
+.+.+ ...+.++++|++|++|.+.
T Consensus 67 ~~~~t~~~m~~~~~~~~~~~D~~i~aAAvs 96 (223)
T d1u7za_ 67 VDVMTALEMEAAVNASVQQQNIFIGCAAVA 96 (223)
T ss_dssp EECCSHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred ceehhhHHHHHHHHhhhccceeEeeeechh
Confidence 11111 1334467999999998764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=83.99 E-value=1.1 Score=35.19 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=26.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+|+|+| +|.+|...+..+...+.. .|+..|.++
T Consensus 27 ~tVlV~G-aG~vGl~a~~~ak~~ga~------~Vi~~d~~~ 60 (195)
T d1kola2 27 STVYVAG-AGPVGLAAAASARLLGAA------VVIVGDLNP 60 (195)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCS------EEEEEESCH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhhccc------ceeeecccc
Confidence 5899999 599998777777666642 788999863
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=83.88 E-value=0.43 Score=40.97 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=26.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEec
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI 44 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~ 44 (320)
-|.||| +|+-|+.+|.+|.+.|+ .|.+++.
T Consensus 4 ~VIVVG-sG~aG~v~A~rLaeaG~-------~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIG-TGYGAAVSALRLGEAGV-------QTLMLEM 33 (367)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTC-------CEEEEES
T ss_pred eEEEeC-cCHHHHHHHHHHHHCcC-------eEEEEec
Confidence 378999 79999999999999987 7888886
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.76 E-value=0.71 Score=35.83 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=42.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCCcE
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNI 84 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~aDv 84 (320)
.+||+|+| =|.=|.+-+..|...|+ +|++ ...+.. +....+. .+. ++. .+..+|.+.+|+
T Consensus 16 ~k~IaViG-YGsQG~AhAlNLrDSG~-------~V~V-GLr~gs-~s~~~A~--~~G-------f~v-~~~~eA~~~aDi 75 (182)
T d1np3a2 16 GKKVAIIG-YGSQGHAHACNLKDSGV-------DVTV-GLRSGS-ATVAKAE--AHG-------LKV-ADVKTAVAAADV 75 (182)
T ss_dssp TSCEEEEC-CSHHHHHHHHHHHHTTC-------CEEE-ECCTTC-HHHHHHH--HTT-------CEE-ECHHHHHHTCSE
T ss_pred CCEEEEEe-eCcHhHHHHhhhhhcCC-------CEEE-EcCCCC-ccHHHHh--hhc-------ccc-ccHHHHhhhcCe
Confidence 47999999 79999999999999997 4443 333211 1111111 111 122 257899999999
Q ss_pred EEEeC
Q 020875 85 AVMVG 89 (320)
Q Consensus 85 Vi~~a 89 (320)
|.++.
T Consensus 76 im~L~ 80 (182)
T d1np3a2 76 VMILT 80 (182)
T ss_dssp EEECS
T ss_pred eeeec
Confidence 99974
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=83.56 E-value=1.1 Score=32.76 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=30.0
Q ss_pred CCCC--CCEEEEEcCCC-----------hhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 1 MAKE--PVRVLVTGAAG-----------QIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 1 m~~~--~~kI~IiGA~G-----------~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
|+.+ ..||.|+| +| +-+.+.+..|.+.|+ ++++++.|+
T Consensus 1 mp~~~~~kkvlilG-sGp~~IGq~~EfDy~~~~a~~alke~g~-------~~iliN~NP 51 (127)
T d1a9xa3 1 MPKRTDIKSILILG-AGPIVIGQACEFDYSGAQACKALREEGY-------RVINVNSNP 51 (127)
T ss_dssp CCCCSSCCEEEEEC-CCSCBTTBCTHHHHHHHHHHHHHHHHTC-------EEEEECSCT
T ss_pred CCCCCCCCEEEEEC-CCcCcccccchhHHHHHHHHHHHHHcCC-------eEEEecCch
Confidence 7764 47999999 56 346777888888887 899999875
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=82.94 E-value=0.27 Score=36.06 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~ 46 (320)
++.+|+|+| +|..|.+++..+... ++ .-+.++|.++
T Consensus 2 ~~~~v~I~G-aG~~G~~l~~~l~~~~~~------~iv~fiDdd~ 38 (126)
T d2dt5a2 2 RKWGLCIVG-MGRLGSALADYPGFGESF------ELRGFFDVDP 38 (126)
T ss_dssp SCEEEEEEC-CSHHHHHHHHCSCCCSSE------EEEEEEESCT
T ss_pred CCceEEEEc-CCHHHHHHHHhHhhcCCc------EEEEEEeCch
Confidence 356999999 599999998765432 32 1456888764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.32 E-value=0.62 Score=34.85 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEec
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI 44 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~ 44 (320)
+.++|+|+|| |.+|..-+..|++.|. +|+++..
T Consensus 12 ~gkrvLViGg-G~va~~ka~~Ll~~GA-------~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGG-GEVGLTRLYKLMPTGC-------KLTLVSP 44 (150)
T ss_dssp TTCEEEEEEE-SHHHHHHHHHHGGGTC-------EEEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-------EEEEEeC
Confidence 4579999995 9999999999999886 7888864
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=82.17 E-value=0.63 Score=35.39 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=26.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEec
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI 44 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~ 44 (320)
..+|+|+| +|++|.-++..|.+.+.- .+|.+++.
T Consensus 3 ~~~VvIIG-gG~~G~e~A~~l~~~g~~-----v~v~~~~~ 36 (185)
T d1q1ra1 3 NDNVVIVG-TGLAGVEVAFGLRASGWE-----GNIRLVGD 36 (185)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCC-----SEEEEECS
T ss_pred CCCEEEEC-CcHHHHHHHHHHHHcCCc-----eEEEEecC
Confidence 46999999 599999999999988762 25555554
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.15 E-value=1.5 Score=33.47 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=42.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCCC
Q 020875 4 EPVRVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGV 82 (320)
Q Consensus 4 ~~~kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~a 82 (320)
+..||+++|= + +.+++.++.. ..++ .++.++-...- ........+...........+..+.+..++++++
T Consensus 3 ~gl~I~~vGD-~---~nV~~Sli~~~~~~g----~~~~~~~P~~~-~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~a 73 (170)
T d1otha2 3 KGLTLSWIGD-G---NNILHSIMMSAAKFG----MHLQAATPKGY-EPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGG 73 (170)
T ss_dssp TTCEEEEESC-S---SHHHHHHHTTTGGGT----CEEEEECCTTC-CCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTC
T ss_pred CCCEEEEEcC-c---hhHHHHHHHHHHHcC----CEEEEEecccc-CCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhh
Confidence 5679999995 4 4555655432 1122 27777765321 1111111111111111235678888999999999
Q ss_pred cEEEEeC
Q 020875 83 NIAVMVG 89 (320)
Q Consensus 83 DvVi~~a 89 (320)
|+|....
T Consensus 74 dvi~~~~ 80 (170)
T d1otha2 74 NVLITDT 80 (170)
T ss_dssp SEEEECC
T ss_pred hheeeec
Confidence 9999864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.77 E-value=1.2 Score=33.76 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=28.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
..+|+|+| +|.+|...+..+...|. +++.+|+++
T Consensus 28 g~~vlI~G-aG~vG~~a~q~ak~~G~-------~vi~~~~~~ 61 (168)
T d1piwa2 28 GKKVGIVG-LGGIGSMGTLISKAMGA-------ETYVISRSS 61 (168)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHHTC-------EEEEEESSS
T ss_pred CCEEEEEC-CCCcchhHHHHhhhccc-------cccccccch
Confidence 36999999 59999998887777776 788899875
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=81.06 E-value=7.3 Score=28.20 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=28.3
Q ss_pred CCEEEEEcCC---ChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 5 PVRVLVTGAA---GQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 5 ~~kI~IiGA~---G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
++.|+|+||+ +..|..++..|.+.|+ .+.++..+
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~-------~~~~v~~~ 49 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY-------RVLPVNPR 49 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTC-------EEEEECGG
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCCC-------CceEEEec
Confidence 5789999987 4689999999999887 77888764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.94 E-value=1.2 Score=33.99 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=27.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
..+|+|+||+|.||...+..+...|. +++..+.+
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G~-------~vi~~~~~ 62 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYGL-------KILGTAGT 62 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-------EEEEEESS
T ss_pred CCEEEEEeccccccccccccccccCc-------cccccccc
Confidence 35899999889999998888888786 67777654
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.93 E-value=1.1 Score=32.78 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=26.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh----cCcCCCCCCeEEEEEecC
Q 020875 5 PVRVLVTGAAGQIGYALVPMIAR----GVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 5 ~~kI~IiGA~G~vG~~la~~L~~----~~~~~~~~~~ev~l~D~~ 45 (320)
..+|+|+| +|++|.-++..|.. .|. +|.+++..
T Consensus 37 ~k~i~IvG-gG~~G~E~A~~l~~~~~~~g~-------~Vt~i~~~ 73 (137)
T d1m6ia2 37 VKSITIIG-GGFLGSELACALGRKARALGT-------EVIQLFPE 73 (137)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHHHHHTC-------EEEEECSS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHHHHhcCC-------EEEEeccc
Confidence 46899999 59999999988853 344 88888874
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=80.91 E-value=3 Score=31.02 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=46.0
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCcCCCCCCeEEEEEecCCccchhHHHHHHHhcccCCCCcceEEeCChhhhcCC
Q 020875 4 EPVRVLVTGAA--GQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTG 81 (320)
Q Consensus 4 ~~~kI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~~~~~~~~~~~dl~~~~~~~~~~v~~~~~~~~al~~ 81 (320)
...||+++|=. +.|...++..+..-|. ++.++-.... .........+.. ....+..+.++.+++++
T Consensus 3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~-------~~~~~~P~~~-~~~~~~~~~~~~----~~~~~~~~~d~~~av~~ 70 (157)
T d1ml4a2 3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV-------ELYLISPELL-RMPRHIVEELRE----KGMKVVETTTLEDVIGK 70 (157)
T ss_dssp SSEEEEEESCTTTCHHHHHHHHHGGGSCE-------EEEEECCGGG-CCCHHHHHHHHH----TTCCEEEESCTHHHHTT
T ss_pred CCCEEEEEcCCccChHHHHHHHHHHhcCC-------cEEEEccchh-hcchHHHHHHHh----hcccceeecCHHHhhcc
Confidence 45799999942 6788888777766564 7777765321 111111111111 12456777889999999
Q ss_pred CcEEEEe
Q 020875 82 VNIAVMV 88 (320)
Q Consensus 82 aDvVi~~ 88 (320)
+|+|..+
T Consensus 71 aDvvy~~ 77 (157)
T d1ml4a2 71 LDVLYVT 77 (157)
T ss_dssp CSEEEEC
T ss_pred CcEEEee
Confidence 9988775
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.85 E-value=0.55 Score=35.99 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=20.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhc
Q 020875 2 AKEPVRVLVTGAAGQIGYALVPMIARG 28 (320)
Q Consensus 2 ~~~~~kI~IiGA~G~vG~~la~~L~~~ 28 (320)
++.++||+|+| +|.+|...+..|...
T Consensus 4 ~~~k~kv~iIG-~G~~g~~h~~~l~~~ 29 (172)
T d1lc0a1 4 NSGKFGVVVVG-VGRAGSVRLRDLKDP 29 (172)
T ss_dssp CCCSEEEEEEC-CSHHHHHHHHHHTSH
T ss_pred CCCCcEEEEEc-CCHHHHHHHHHHHhC
Confidence 44568999999 699999888776543
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=80.73 E-value=0.73 Score=37.98 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=27.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-CcCCCCCCeEEEEEecCC
Q 020875 7 RVLVTGAAGQIGYALVPMIARG-VMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ev~l~D~~~ 46 (320)
-|+||| +|..|...|..|+++ |+ ++.++|..+
T Consensus 35 DViVIG-aGpaGL~aA~~LA~~~G~-------~V~vlE~~~ 67 (278)
T d1rp0a1 35 DVVVVG-AGSAGLSAAYEISKNPNV-------QVAIIEQSV 67 (278)
T ss_dssp EEEEEC-CSHHHHHHHHHHHTSTTS-------CEEEEESSS
T ss_pred CEEEEC-CCHHHHHHHHHHHHccCC-------eEEEEecCC
Confidence 599999 599999999999874 87 899999753
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=80.17 E-value=0.82 Score=35.89 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=27.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecC
Q 020875 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP 45 (320)
Q Consensus 7 kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~ 45 (320)
-|+||| +|..|...|..+.+.|. +|.+++..
T Consensus 4 DvvVIG-~G~aG~~aA~~a~~~G~-------kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIG-GGSGGIASINRAAMYGQ-------KCALIEAK 34 (217)
T ss_dssp EEEEEC-CSHHHHHHHHHHHTTTC-------CEEEEESS
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEecc
Confidence 589999 59999999999999887 79999864
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=80.05 E-value=0.97 Score=34.50 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=27.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCcCCCCCCeEEEEEecCC
Q 020875 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP 46 (320)
Q Consensus 6 ~kI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ev~l~D~~~ 46 (320)
.+|+|+|| |-+|...+..+...+.. .|+..|.++
T Consensus 30 dtVlV~Ga-GG~G~~~~~~~~~~g~~------~Vi~~~~~~ 63 (176)
T d2jhfa2 30 STCAVFGL-GGVGLSVIMGCKAAGAA------RIIGVDINK 63 (176)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCS------EEEEECSCG
T ss_pred CEEEEECC-CCcHHHHHHHHHHcCCc------eEEeecCcH
Confidence 58999996 88999888888877653 789999875
|