Citrus Sinensis ID: 020890

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLLVF
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHcccccccEEEEEEEEEEccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccEEEEcccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEcccccHccHHHEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGNPSIEAAIKLEKKRADTKLKeldrestdnpiMRLFNRLVRDSLTREKERLEKAEESFKALDlnklrgcfgfdtffatdvrrfgdggifignlrkpIEEVIPKLEKKLSEAAGRDVVVWFMEEktnditkqacavqpkaEIDLQFELTklstpwgyVSAIVLCVATFGTIAIMsglflkpdatfddyLANVVPLFGGLITILGVSEISTRLTAArygvklspsflvpsnwtgclgvmnnyesllpnkkalfdipvaRTASAYLTSLALAVAAFVadgsfnggdnALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLLVF
Flexible Loop (DISEMBL)
mgnpsieaAIKLekkradtklkeldrestdnpimrlfnrlvrdSLTREKERLEKAEEsfkaldlnklrgCFGFDTFFATDVRRFGDGGifignlrkpiEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLLVF
Low Complexity Region (SEG)
MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVartasayltslalavaaFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLLVF
Disordered region (IsUnstruct)
***********************************LFNRL******************FKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLLV*
Disordered Region (DISOPRED)
****************************************************************NKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQP************LSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLLVF
Disordered Region (DISEMBL)
MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLLVF
Disordered Region (DISPRO)
***PSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLLVF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNPSIxxxxxxxxxxxxxxxxxxxxxSTDNPIMRLFxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLLVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
225429195	579	PREDICTED: uncharacterized protein LOC10	0.903	0.499	0.878	1e-148
297736406	456	unnamed protein product [Vitis vinifera]	0.903	0.633	0.878	1e-148
255562204	613	sterol regulatory element-binding protei	0.903	0.471	0.851	1e-146
449465097	572	PREDICTED: uncharacterized protein LOC10	0.903	0.505	0.865	1e-144
307135955	572	sterol regulatory element-binding protei	0.903	0.505	0.861	1e-144
449484390	573	PREDICTED: uncharacterized LOC101220315	0.903	0.504	0.855	1e-142
356495811	531	PREDICTED: uncharacterized protein LOC10	0.903	0.544	0.841	1e-140
110740640	573	hypothetical protein [Arabidopsis thalia	0.903	0.504	0.844	1e-139
15220875	573	ethylene-dependent gravitropism-deficien	0.903	0.504	0.844	1e-139
297850180	573	hypothetical protein ARALYDRAFT_889199 [	0.903	0.504	0.837	1e-138

>gi|225429195|ref|XP_002271890.1| PREDICTED: uncharacterized protein LOC100241185 [Vitis vinifera] gi|147804805|emb|CAN73523.1| hypothetical protein VITISV_010704 [Vitis vinifera]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/289 (87%), Positives = 276/289 (95%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MGNPSIEAAIKLEKKRAD KLKELDRES+DNP++ LFNR+VRDSL REKERLEKAEE+FK
Sbjct: 124 MGNPSIEAAIKLEKKRADRKLKELDRESSDNPVVGLFNRVVRDSLAREKERLEKAEEAFK 183

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDLNKL+ CFGFDTF+ATDVRRFGDGGIFIGNLR+PIEEVIPKLEKKLSEAAGR+VV+W
Sbjct: 184 ALDLNKLKNCFGFDTFYATDVRRFGDGGIFIGNLRRPIEEVIPKLEKKLSEAAGREVVLW 243

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEEK NDITKQ C VQPKAE+DLQFE TKLSTPWGY+S+IVLCVATFGTIA+MSG FLK
Sbjct: 244 FMEEKANDITKQVCMVQPKAEMDLQFESTKLSTPWGYISSIVLCVATFGTIALMSGFFLK 303

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN 240
           P+ATFDDYLA+VVPLF G +TILGVSEI+TR+TAARYGVKLSPSFLVPSNWTGCLGVMNN
Sbjct: 304 PNATFDDYLADVVPLFSGFVTILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMNN 363

Query: 241 YESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALML 289
           YESLLPNKKALFDIPVARTASAY+TSL LAVAAF+ADGSFNGGDNAL +
Sbjct: 364 YESLLPNKKALFDIPVARTASAYITSLVLAVAAFIADGSFNGGDNALYI 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736406|emb|CBI25129.3| unnamed protein product [Vitis vinifera]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/289 (87%), Positives = 276/289 (95%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MGNPSIEAAIKLEKKRAD KLKELDRES+DNP++ LFNR+VRDSL REKERLEKAEE+FK
Sbjct: 1   MGNPSIEAAIKLEKKRADRKLKELDRESSDNPVVGLFNRVVRDSLAREKERLEKAEEAFK 60

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDLNKL+ CFGFDTF+ATDVRRFGDGGIFIGNLR+PIEEVIPKLEKKLSEAAGR+VV+W
Sbjct: 61  ALDLNKLKNCFGFDTFYATDVRRFGDGGIFIGNLRRPIEEVIPKLEKKLSEAAGREVVLW 120

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEEK NDITKQ C VQPKAE+DLQFE TKLSTPWGY+S+IVLCVATFGTIA+MSG FLK
Sbjct: 121 FMEEKANDITKQVCMVQPKAEMDLQFESTKLSTPWGYISSIVLCVATFGTIALMSGFFLK 180

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN 240
           P+ATFDDYLA+VVPLF G +TILGVSEI+TR+TAARYGVKLSPSFLVPSNWTGCLGVMNN
Sbjct: 181 PNATFDDYLADVVPLFSGFVTILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMNN 240

Query: 241 YESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALML 289
           YESLLPNKKALFDIPVARTASAY+TSL LAVAAF+ADGSFNGGDNAL +
Sbjct: 241 YESLLPNKKALFDIPVARTASAYITSLVLAVAAFIADGSFNGGDNALYI 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562204|ref|XP_002522110.1| sterol regulatory element-binding protein site 2 protease, putative [Ricinus communis] gi|223538709|gb|EEF40310.1| sterol regulatory element-binding protein site 2 protease, putative [Ricinus communis]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/289 (85%), Positives = 272/289 (94%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MG+PSIEAAIKLEKKRAD KLKELDRES+DNP++  FNRL+RDSL REKERLE AEE+FK
Sbjct: 158 MGSPSIEAAIKLEKKRADRKLKELDRESSDNPLVGFFNRLLRDSLAREKERLEMAEEAFK 217

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDLNKL+ CFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKK+SEAAGR+VV+W
Sbjct: 218 ALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKISEAAGREVVIW 277

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEE+ ++ITKQAC VQPK+E+DLQFE TKLSTPWGY+SA+ LCV TFGTIA+MSG FLK
Sbjct: 278 FMEERNDNITKQACVVQPKSEMDLQFESTKLSTPWGYISAVALCVTTFGTIALMSGFFLK 337

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN 240
           PDATFDDY+A+VVPLFGG ++ILG SEI+TR+TAARYGVKLSPSFLVPSNWTGCLGVMNN
Sbjct: 338 PDATFDDYIADVVPLFGGFLSILGASEITTRITAARYGVKLSPSFLVPSNWTGCLGVMNN 397

Query: 241 YESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALML 289
           YESLLPNKKALFDIPVARTASAYLTSL LA+AAF ADGSFNGGDNAL +
Sbjct: 398 YESLLPNKKALFDIPVARTASAYLTSLVLAIAAFAADGSFNGGDNALYI 446

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465097|ref|XP_004150265.1| PREDICTED: uncharacterized protein LOC101220315 [Cucumis sativus]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/289 (86%), Positives = 271/289 (93%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MGNPSIEAAIKLEKKRAD KLKELDRE  +NPI+ LFNR+ RD+L +EKERLEKAEE+FK
Sbjct: 117 MGNPSIEAAIKLEKKRADRKLKELDREGANNPIVGLFNRIARDNLEKEKERLEKAEETFK 176

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDL+KLRGCFGF+TFFATDVRRFGDGGIFIGNLR+PIEEVIP+LEKKLSEAAGR+VV+W
Sbjct: 177 ALDLSKLRGCFGFNTFFATDVRRFGDGGIFIGNLRRPIEEVIPQLEKKLSEAAGREVVLW 236

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEEKT+DITKQ C VQPKAEIDLQFE TKLSTP GY SAI LCVATFGTIA+MSG FLK
Sbjct: 237 FMEEKTDDITKQVCMVQPKAEIDLQFESTKLSTPLGYFSAITLCVATFGTIALMSGFFLK 296

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN 240
           P ATFDDY+ANVVPLFGG I+ILGVSEI+TR+TAARYGVKLSPSFLVPSNWTGCLGVMNN
Sbjct: 297 PGATFDDYIANVVPLFGGFISILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMNN 356

Query: 241 YESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALML 289
           YESLLPNKKALFDIPVARTASAYLTSLALAV+AFV DG FNGGDNA+ +
Sbjct: 357 YESLLPNKKALFDIPVARTASAYLTSLALAVSAFVIDGGFNGGDNAMYI 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135955|gb|ADN33815.1| sterol regulatory element-binding protein site 2 protease [Cucumis melo subsp. melo]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/289 (86%), Positives = 270/289 (93%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MGNPSIEAAIKLEKKRAD KLKELDRE  +NPI+ LFNR+ RD+L +EKERLEKAEE+FK
Sbjct: 117 MGNPSIEAAIKLEKKRADRKLKELDREGANNPIVGLFNRIARDNLEKEKERLEKAEETFK 176

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDLNKL+ CFGF+TFFATDVRRFGDGGIFIGNLR+PIEEVIP+LEKKLSEAAGR+VV+W
Sbjct: 177 ALDLNKLKSCFGFNTFFATDVRRFGDGGIFIGNLRRPIEEVIPQLEKKLSEAAGREVVLW 236

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEEKT+DITKQ C VQPKAEIDLQFE TKLSTP GY SAI LCVATFGTIA+MSG FLK
Sbjct: 237 FMEEKTDDITKQVCMVQPKAEIDLQFESTKLSTPLGYFSAITLCVATFGTIALMSGFFLK 296

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN 240
           P ATFDDY+ANVVPLFGG I+ILGVSEI+TR+TAARYGVKLSPSFLVPSNWTGCLGVMNN
Sbjct: 297 PGATFDDYIANVVPLFGGFISILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMNN 356

Query: 241 YESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALML 289
           YESLLPNKKALFDIPVARTASAYLTSLALAV+AFV DG FNGGDNA+ +
Sbjct: 357 YESLLPNKKALFDIPVARTASAYLTSLALAVSAFVIDGGFNGGDNAMYI 405

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484390|ref|XP_004156868.1| PREDICTED: uncharacterized LOC101220315 [Cucumis sativus]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/290 (85%), Positives = 269/290 (92%), Gaps = 1/290 (0%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MGNPSIEAAIKLEKKRAD KLKELDRE  +NPI+ LFNR+ RD+L +EKERLEKAEE+FK
Sbjct: 117 MGNPSIEAAIKLEKKRADRKLKELDREGANNPIVGLFNRIARDNLEKEKERLEKAEETFK 176

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDL+KLRGCFGF+TFFATDVRRFGDGGIFIGNLR+PIEEVIP+LEKKLSEAAGR+VV+W
Sbjct: 177 ALDLSKLRGCFGFNTFFATDVRRFGDGGIFIGNLRRPIEEVIPQLEKKLSEAAGREVVLW 236

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEEKT+DITKQ C VQPKAEIDLQFE TKLSTP GY SAI LCVATFGTIA+MSG FLK
Sbjct: 237 FMEEKTDDITKQVCMVQPKAEIDLQFESTKLSTPLGYFSAITLCVATFGTIALMSGFFLK 296

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEI-STRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
           P ATFDDY+ANVVPLFGG I+ILGVSE+ S  +TAARYGVKLSPSFLVPSNWTGCLGVMN
Sbjct: 297 PGATFDDYIANVVPLFGGFISILGVSEVYSNEVTAARYGVKLSPSFLVPSNWTGCLGVMN 356

Query: 240 NYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALML 289
           NYESLLPNKKALFDIPVARTASAYLTSLALAV+AFV DG FNGGDNA+ +
Sbjct: 357 NYESLLPNKKALFDIPVARTASAYLTSLALAVSAFVIDGGFNGGDNAMYI 406

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495811|ref|XP_003516765.1| PREDICTED: uncharacterized protein LOC100818502 [Glycine max]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/290 (84%), Positives = 267/290 (92%), Gaps = 1/290 (0%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTD-NPIMRLFNRLVRDSLTREKERLEKAEESF 59
           MGNPSIEAAIKLEKKRAD KLK+LDRE+T+ NP+  LFN LVRD+L  EKERL+KAE++F
Sbjct: 81  MGNPSIEAAIKLEKKRADRKLKQLDRETTNTNPLFALFNNLVRDNLLNEKERLQKAEQTF 140

Query: 60  KALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVV 119
           +ALDLN+L+ CFGFDTFFATDVRRFGDGGIFIGNLRKPI++VIPKLEKKLSEAAGR+VVV
Sbjct: 141 QALDLNQLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDDVIPKLEKKLSEAAGREVVV 200

Query: 120 WFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFL 179
           WFMEEK NDITKQAC VQPKAE+DLQFE TKLSTP GY SAI L V TFGT+A+MSG FL
Sbjct: 201 WFMEEKANDITKQACVVQPKAEMDLQFESTKLSTPLGYFSAIALAVTTFGTVALMSGFFL 260

Query: 180 KPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
           KP+ATFDDYLA+ VPLFGG + ILGVSEI+TR+TAA YGVKLSPSFLVPSNWTGCLGVMN
Sbjct: 261 KPNATFDDYLADAVPLFGGFLFILGVSEITTRVTAAHYGVKLSPSFLVPSNWTGCLGVMN 320

Query: 240 NYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALML 289
           NYESLLPNKKALFDIPVARTASAYLTSL LAVAAFVADGSFNGGDNAL +
Sbjct: 321 NYESLLPNKKALFDIPVARTASAYLTSLLLAVAAFVADGSFNGGDNALYV 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740640|dbj|BAE98423.1| hypothetical protein [Arabidopsis thaliana]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/290 (84%), Positives = 270/290 (93%), Gaps = 1/290 (0%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRES-TDNPIMRLFNRLVRDSLTREKERLEKAEESF 59
           MGNPSIEAAIKLEK R D KLKEL++ES ++NPI+ ++N L RDSLT+EKERLEKAEE+F
Sbjct: 116 MGNPSIEAAIKLEKTRTDRKLKELNKESNSENPIIGIYNSLARDSLTKEKERLEKAEETF 175

Query: 60  KALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVV 119
           KALDLNKL+ CFGFDTFFATDVRRFGDGGIFIGNLRKPI+EV PKLE KLSEAAGRDVVV
Sbjct: 176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query: 120 WFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFL 179
           WFMEE++N+ITKQ C VQPKAEIDLQFE T+LSTPWGYVSAI LCV TFGTIA+MSG FL
Sbjct: 236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query: 180 KPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
           KPDATFDDY+ANVVPLFGG ++ILGVSEI+TR+TAAR+GVKLSPSFLVPSNWTGCLGVMN
Sbjct: 296 KPDATFDDYIANVVPLFGGFLSILGVSEIATRVTAARHGVKLSPSFLVPSNWTGCLGVMN 355

Query: 240 NYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALML 289
           NYESLLPNKKALFDIPVARTASAYLTSL LA AAF++DGSFNGGDNAL +
Sbjct: 356 NYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYM 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220875|ref|NP_173229.1| ethylene-dependent gravitropism-deficient and yellow-green-like 3 protein [Arabidopsis thaliana] gi|9665065|gb|AAF97267.1|AC034106_10 F2H15.10 [Arabidopsis thaliana] gi|332191525|gb|AEE29646.1| ethylene-dependent gravitropism-deficient and yellow-green-like 3 protein [Arabidopsis thaliana]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/290 (84%), Positives = 270/290 (93%), Gaps = 1/290 (0%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRES-TDNPIMRLFNRLVRDSLTREKERLEKAEESF 59
           MGNPSIEAAIKLEK R D KLKEL++ES ++NPI+ ++N L RDSLT+EKERLEKAEE+F
Sbjct: 116 MGNPSIEAAIKLEKTRTDRKLKELNKESNSENPIIGIYNSLARDSLTKEKERLEKAEETF 175

Query: 60  KALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVV 119
           KALDLNKL+ CFGFDTFFATDVRRFGDGGIFIGNLRKPI+EV PKLE KLSEAAGRDVVV
Sbjct: 176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query: 120 WFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFL 179
           WFMEE++N+ITKQ C VQPKAEIDLQFE T+LSTPWGYVSAI LCV TFGTIA+MSG FL
Sbjct: 236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query: 180 KPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
           KPDATFDDY+ANVVPLFGG ++ILGVSEI+TR+TAAR+GVKLSPSFLVPSNWTGCLGVMN
Sbjct: 296 KPDATFDDYIANVVPLFGGFLSILGVSEIATRVTAARHGVKLSPSFLVPSNWTGCLGVMN 355

Query: 240 NYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALML 289
           NYESLLPNKKALFDIPVARTASAYLTSL LA AAF++DGSFNGGDNAL +
Sbjct: 356 NYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYI 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850180|ref|XP_002892971.1| hypothetical protein ARALYDRAFT_889199 [Arabidopsis lyrata subsp. lyrata] gi|297338813|gb|EFH69230.1| hypothetical protein ARALYDRAFT_889199 [Arabidopsis lyrata subsp. lyrata]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/290 (83%), Positives = 268/290 (92%), Gaps = 1/290 (0%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRES-TDNPIMRLFNRLVRDSLTREKERLEKAEESF 59
           MGNPSIEAAIKLEK R D KLKEL++ES + NPI+ + N L RD+LTREKERLEKAEE+F
Sbjct: 116 MGNPSIEAAIKLEKTRTDRKLKELNKESNSQNPIIGILNSLARDTLTREKERLEKAEETF 175

Query: 60  KALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVV 119
           KALDLNKL+ CFGFDTFFATDVRRFGDGGIFIGNLRKPI+EV PKLE KLSEAAGRDVVV
Sbjct: 176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query: 120 WFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFL 179
           WFMEE++N+ITKQ C VQPKAEIDLQFE T+LSTPWGY+SAI LCV TFGTIA+MSG FL
Sbjct: 236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYISAIALCVTTFGTIALMSGFFL 295

Query: 180 KPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
           KPDATFDDY+ANVVPLFGG ++ILGVSEI+TR+TAAR+GV+LSPSFLVPSNWTGCLGVMN
Sbjct: 296 KPDATFDDYIANVVPLFGGFLSILGVSEIATRVTAARHGVRLSPSFLVPSNWTGCLGVMN 355

Query: 240 NYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALML 289
           NYESLLPNKKALFDIPVARTASAYLTSL LA AAF++DGSFNGGDNAL +
Sbjct: 356 NYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYI 405

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
TAIR|locus:2030938	573	EGY3 "ETHYLENE-DEPENDENT GRAVI	0.903	0.504	0.793	2.7e-123
TAIR|locus:2182372	548	EGY1 "ETHYLENE-DEPENDENT GRAVI	0.356	0.208	0.317	2.2e-09
TAIR|locus:2166389	556	EGY2 "ethylene-dependent gravi	0.556	0.320	0.290	2e-08

TAIR|locus:2030938 EGY3 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
 Identities = 230/290 (79%), Positives = 255/290 (87%)

Query:     1 MGNPSIEAAIKLEKKRADTKLKELDRES-TDNPIMRLFNRLVRDSLTREKERLEKAEESF 59
             MGNPSIEAAIKLEK R D KLKEL++ES ++NPI+ ++N L RDSLT+EKERLEKAEE+F
Sbjct:   116 MGNPSIEAAIKLEKTRTDRKLKELNKESNSENPIIGIYNSLARDSLTKEKERLEKAEETF 175

Query:    60 KALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVV 119
             KALDLNKL+ CFGFDTFFATDVRRFGDGGIFIGNLRKPI+EV PKLE KLSEAAGRDVVV
Sbjct:   176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query:   120 WFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFL 179
             WFMEE++N+ITKQ C VQPKAEIDLQFE T+LSTPWGYVSAI LCV TFGTIA+MSG FL
Sbjct:   236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query:   180 KPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
             KPDATFDDY+ANVVPLFGG ++ILGVSEI+TR+TAAR+GVKLSPSFLVPSNWTGCLGVMN
Sbjct:   296 KPDATFDDYIANVVPLFGGFLSILGVSEIATRVTAARHGVKLSPSFLVPSNWTGCLGVMN 355

Query:   240 NYESLLPNKKALFDIPVXXXXXXXXXXXXXXXXXFVADGSFNGGDNALML 289
             NYESLLPNKKALFDIPV                 F++DGSFNGGDNAL +
Sbjct:   356 NYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYI 405

GO:0005739 "mitochondrion" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

TAIR|locus:2182372 EGY1 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 39/123 (31%), Positives = 65/123 (52%)

Query:    53 EKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGG---IFIGNLRKPIEEVIPKLEKKL 109
             EK + +   L  +KL   FG+ TF+ T    FGD G   +F+GNLR   E+V  KL++KL
Sbjct:   137 EKVDPADVKLIKDKL---FGYSTFWVTKEEPFGDLGEGILFLGNLRGKKEDVFAKLQRKL 193

Query:   110 SEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKL--STPWGYVSAIVLCVAT 167
              E A     ++ +EE  ++        +    + L+ E+++   +T W YV A++L + T
Sbjct:   194 VEVASDKYNLFMIEEPNSEGPDPRGGARVSFGL-LRKEVSEPGPTTLWQYVIALILFLLT 252

Query:   168 FGT 170
              G+
Sbjct:   253 IGS 255

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009959 "negative gravitropism" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0043157 "response to cation stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

TAIR|locus:2166389 EGY2 "ethylene-dependent gravitropism-deficient and yellow-green-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 57/196 (29%), Positives = 92/196 (46%)

Query:    67 LRG-CFGFDTFFATDVRRFGDGGIFIGNLR-KPIEEVIPKLEKKLSEAAGRDVVVWFMEE 124
             LRG  FGFDTFF T    +  G +F GNLR KP      K++ ++    G    ++ +  
Sbjct:   187 LRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSY-EKIKTRMENNFGDQYKLFLLTN 245

Query:   125 KTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPD-- 182
               +D  K    V P+  ++ +   T     W    +  L VA F T+ + +   L+ D  
Sbjct:   246 PEDD--KPVAVVVPRRSLEPE---TTAVPEWFAAGSFGL-VALF-TLFLRNVPALQSDLL 298

Query:   183 ATFD--DYLANVVPLFGGLIT--ILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVM 238
             + FD  + L + +P  G L+T  +LGV E+   L A   G+KL   F VPS   G  G +
Sbjct:   299 SAFDNLELLKDGLP--GALVTALVLGVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAI 356

Query:   239 NNYESLLPNKKALFDI 254
                ++++  ++ L  +
Sbjct:   357 TRIKNIVAKREDLLKV 372


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.140   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      320       303   0.00097  115 3  11 22  0.50    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  197 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.67u 0.08s 26.75t   Elapsed:  00:00:01
  Total cpu time:  26.67u 0.08s 26.75t   Elapsed:  00:00:01
  Start:  Fri May 10 14:21:16 2013   End:  Fri May 10 14:21:17 2013

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
cd06160	183	cd06160, S2P-M50_like_2, Uncharacterized homologs	2e-08

>gnl|CDD|100081 cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 161 IVLCVATFGT----IAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAAR 216
           ++L V T  T     A +SG  +  +          +P    L+ ILG+ E+   L A R
Sbjct: 1   LLLLVLTLLTTLLVGAWLSGNDVPGNPLLLLQ---GLPFALALLAILGIHEMGHYLAARR 57

Query: 217 YGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVA 257
           +GVK S  + +P  + G  G      S +PN+KALFDI +A
Sbjct: 58  HGVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALA 98

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	99.85
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	99.59
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	99.47
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	99.35
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	99.16
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	99.15
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	99.12
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	98.74
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.48
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	98.43
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.41
COG1994	230	SpoIVFB Zn-dependent proteases [General function p	97.27
PF13398	200	Peptidase_M50B: Peptidase M50B-like	97.01
COG0750	375	Predicted membrane-associated Zn-dependent proteas	96.77
COG0750	375	Predicted membrane-associated Zn-dependent proteas	95.21
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	93.08

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.85  E-value=9.2e-21  Score=170.01  Aligned_cols=128  Identities=31%  Similarity=0.428  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHhhhccCCC--CchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccceee
Q 020890          162 VLCVATFGTIAIMSGLFLKPD--ATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMN  239 (320)
Q Consensus       162 ~L~~~Tl~Tt~~~g~~~~~~~--~~~~~~~~~glp~al~ll~iL~~HElGH~~~Ar~~gv~~slPyFIP~~~lGtfGav~  239 (320)
                      +++++|++|....+.+..+.+  ..+. .+..+++++++++.++.+||+||+++||++|+|++.|+++|+..+|++|+++
T Consensus         2 ~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~~   80 (183)
T cd06160           2 LLLVLTLLTTLLVGAWLSGNDVPGNPL-LLLQGLPFALALLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAFI   80 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEEE
Confidence            577889888887765543322  1122 4678999999999999999999999999999999999999998899999999


Q ss_pred             ecCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHhhCCCCCCCchhHHhHHhhhcccchhHHHHHHHHHHHHHHHhhh
Q 020890          240 NYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLL  318 (320)
Q Consensus       240 ~~~s~~p~r~alfdIaiAGPlag~~~al~~~~~Gl~ls~~~~gg~~~l~lg~~l~~g~~~~Pl~~~gWvGl~vt~l~l~  318 (320)
                      ++++..++|+++++|++|||++|+++++++++++                            +...+|+++.++++||+
T Consensus        81 ~~~~~~~~~~~~~~IalAGPl~nl~lali~~~~~----------------------------~~~~~~~nl~l~~fNLL  131 (183)
T cd06160          81 RMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG----------------------------LAVAGWVGLLVTALNLL  131 (183)
T ss_pred             EecCCCCChhHhehhhhhHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999887765                            23456777777777775

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.59  E-value=2e-14  Score=132.61  Aligned_cols=111  Identities=18%  Similarity=0.072  Sum_probs=91.6

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccceeeecCCCCCCchhhhhhhhhhhHHHHHHHH
Q 020890          188 YLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSL  267 (320)
Q Consensus       188 ~~~~glp~al~ll~iL~~HElGH~~~Ar~~gv~~slPyFIP~~~lGtfGav~~~~s~~p~r~alfdIaiAGPlag~~~al  267 (320)
                      .+..|+.++++++.++++||+||+++||++|+++.      .+.+..||+++++++.++++++++.|++|||++++++++
T Consensus        41 ~~~~g~~~~~~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~~IalAGPl~Nllla~  114 (227)
T cd06164          41 AWLLGLAAALLLFASVLLHELGHSLVARRYGIPVR------SITLFLFGGVARLEREPETPGQEFVIAIAGPLVSLVLAL  114 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEC------eEEEEeeeEEEEecCCCCCHHHHhhhhhhHHHHHHHHHH
Confidence            57889999999999999999999999999999985      566777899999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCchhHHhHHhhhcccchhHHHHHHHHHHHHHHHhhh
Q 020890          268 ALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLL  318 (320)
Q Consensus       268 ~~~~~Gl~ls~~~~gg~~~l~lg~~l~~g~~~~Pl~~~gWvGl~vt~l~l~  318 (320)
                      +++++....+.+.              .+....-+...+|+-++....||+
T Consensus       115 i~~~l~~~~~~~~--------------~~~~~~~~~~~~~~Nl~l~~fNLl  151 (227)
T cd06164         115 LFLLLSLALPGSG--------------AGPLGVLLGYLALINLLLAVFNLL  151 (227)
T ss_pred             HHHHHHHHhcccc--------------chHHHHHHHHHHHHHHHHHHHhCc
Confidence            9888776554321              011112245567888888888987

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.47  E-value=2.6e-13  Score=123.23  Aligned_cols=109  Identities=17%  Similarity=0.073  Sum_probs=90.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccceeeecCCCCCCchhhhhhhhhhhHHHHHHHH
Q 020890          188 YLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSL  267 (320)
Q Consensus       188 ~~~~glp~al~ll~iL~~HElGH~~~Ar~~gv~~slPyFIP~~~lGtfGav~~~~s~~p~r~alfdIaiAGPlag~~~al  267 (320)
                      .|..++.+++.++.++++||+||+++||++|+++      +.+.+..||+++++++.+.+|++.+.|++|||++++++++
T Consensus        26 ~~~~~~~~~l~l~~~v~iHElgH~~~A~~~G~~v------~~i~l~p~Gg~~~~~~~~~~~~~~~lIalAGPl~n~~la~   99 (208)
T cd06161          26 AWLLGLLEALLLFLSVLLHELGHALVARRYGIRV------RSITLLPFGGVAELEEEPETPKEEFVIALAGPLVSLLLAG   99 (208)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc------cceEEEeeeeeeeeccCCCChhHheeeeeehHHHHHHHHH
Confidence            5778999999999999999999999999999997      4677788899999998888999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCchhHHhHHhhhcccchhHHHHHHHHHHHHHHHhhh
Q 020890          268 ALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLL  318 (320)
Q Consensus       268 ~~~~~Gl~ls~~~~gg~~~l~lg~~l~~g~~~~Pl~~~gWvGl~vt~l~l~  318 (320)
                      +++++....++.                ....+.+...+|+.++..+.||+
T Consensus       100 ~~~~l~~~~~~~----------------~~~~~~~~~~~~~N~~l~lfNLl  134 (208)
T cd06161         100 LFYLLYLLLPGG----------------GPLSSLLEFLAQVNLILGLFNLL  134 (208)
T ss_pred             HHHHHHHHcccc----------------hHHHHHHHHHHHHHHHHHHHHcc
Confidence            887766544321                11233455667888888888886

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.35  E-value=4.1e-12  Score=111.38  Aligned_cols=114  Identities=18%  Similarity=0.126  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccc-----------------ccccccccccccccceeeecCCCCCC-----chhh
Q 020890          194 PLFGGLITILGVSEISTRLTAARYGVKL-----------------SPSFLVPSNWTGCLGVMNNYESLLPN-----KKAL  251 (320)
Q Consensus       194 p~al~ll~iL~~HElGH~~~Ar~~gv~~-----------------slPyFIP~~~lGtfGav~~~~s~~p~-----r~al  251 (320)
                      .+.++++.++.+||+||+++||++|+++                 ...+++|.      |++.++.+..++     |++.
T Consensus         2 ~~~~~~~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~------gG~~~~~~~~~~~~~~~~~~~   75 (180)
T cd05709           2 AFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPL------GGYAKPVGENPRAFKKPRWQR   75 (180)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhc------cCeeccCCCChhhhccchhhh
Confidence            4678889999999999999999999954                 33444444      999999887765     8899


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhCCCCCCCchhHHhHHhhhcccchhHHHHHHHHHHHHHHHhhhc
Q 020890          252 FDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLLV  319 (320)
Q Consensus       252 fdIaiAGPlag~~~al~~~~~Gl~ls~~~~gg~~~l~lg~~l~~g~~~~Pl~~~gWvGl~vt~l~l~~  319 (320)
                      +.|++|||+++++++++++.+....+.......     . ........+.+.+.+|+.+...++||+-
T Consensus        76 ~~i~laGPl~nllla~i~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~n~~l~~fNLlP  137 (180)
T cd05709          76 LLVALAGPLANLLLALLLLLLLLLLGGLPPAPV-----G-QAASSGLANLLAFLALINLNLAVFNLLP  137 (180)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHccCCccch-----h-hhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999877765553211000     0 0011234556788899999999999873

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.16  E-value=1.7e-10  Score=103.84  Aligned_cols=78  Identities=22%  Similarity=0.160  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccccccccc---cc------------ccccccceeeecCCCCC------------
Q 020890          194 PLFGGLITILGVSEISTRLTAARYGVKLSPSFLV---PS------------NWTGCLGVMNNYESLLP------------  246 (320)
Q Consensus       194 p~al~ll~iL~~HElGH~~~Ar~~gv~~slPyFI---P~------------~~lGtfGav~~~~s~~p------------  246 (320)
                      .+.+++..++.+||+||+++||++|+++.- |.|   |.            +.+-.+|++.++++..+            
T Consensus         3 ~~~i~l~~~v~iHElGH~~~Ar~~Gv~v~~-f~iGfGp~l~~~~~~~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~   81 (182)
T cd06163           3 AFILVLGILIFVHELGHFLVAKLFGVKVEE-FSIGFGPKLFSFKKGETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRS   81 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeeE-eeeecCceeeeeecCCeEEEEEEEEeccEEEecCCCcccccccccchHH
Confidence            466788899999999999999999999752 111   10            11334799999886433            


Q ss_pred             ----CchhhhhhhhhhhHHHHHHHHHHHHH
Q 020890          247 ----NKKALFDIPVARTASAYLTSLALAVA  272 (320)
Q Consensus       247 ----~r~alfdIaiAGPlag~~~al~~~~~  272 (320)
                          ++++.+-|++|||+++++++++++.+
T Consensus        82 f~~~~~~~ri~V~lAGP~~NlilA~i~~~~  111 (182)
T cd06163          82 FNSKPVWQRILIVFAGPLANFLLAIVLFAV  111 (182)
T ss_pred             HccCCcchhhhhhhhHHHHHHHHHHHHHHH
Confidence                35677889999999999999887654

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.15  E-value=3.1e-10  Score=107.45  Aligned_cols=83  Identities=14%  Similarity=0.071  Sum_probs=65.6

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccceeeecCCCC---CCchhhhhhhhhhhHHHHHH
Q 020890          189 LANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLL---PNKKALFDIPVARTASAYLT  265 (320)
Q Consensus       189 ~~~glp~al~ll~iL~~HElGH~~~Ar~~gv~~slPyFIP~~~lGtfGav~~~~s~~---p~r~alfdIaiAGPlag~~~  265 (320)
                      +...+.+.++++.++.+||+||+++||++|+++..--+.  ..+-.+||+.++.+..   .++++.+.|+.|||++++++
T Consensus       107 ~i~~~~~~iaL~isv~iHElgHa~~Ar~~G~~V~~iGl~--l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlvl  184 (263)
T cd06159         107 FIPLPYGIIALVVGVVVHELSHGILARVEGIKVKSGGLL--LLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVV  184 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECchhHH--HHhhhcEEEEEecchhhccCChhheeeeeeehHHHHHHH
Confidence            456777888999999999999999999999998631110  1112378999987765   56788999999999999999


Q ss_pred             HHHHHHHH
Q 020890          266 SLALAVAA  273 (320)
Q Consensus       266 al~~~~~G  273 (320)
                      +++++++-
T Consensus       185 a~i~~~l~  192 (263)
T cd06159         185 ALIAFALF  192 (263)
T ss_pred             HHHHHHHH
Confidence            98887653

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.12  E-value=1.3e-10  Score=102.42  Aligned_cols=112  Identities=15%  Similarity=0.108  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccccccccc--ccc---------------c-------c-----ccceeeecCCCC
Q 020890          195 LFGGLITILGVSEISTRLTAARYGVKLSPSFLVP--SNW---------------T-------G-----CLGVMNNYESLL  245 (320)
Q Consensus       195 ~al~ll~iL~~HElGH~~~Ar~~gv~~slPyFIP--~~~---------------l-------G-----tfGav~~~~s~~  245 (320)
                      +.++++.++.+||+||.++|+++|.++.-...-+  .+.               +       |     ..++..+.+...
T Consensus         2 ~~~~~~i~i~~HE~gH~~~a~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~   81 (192)
T PF02163_consen    2 FILALLISIVLHELGHALAARLYGDKVPRFEGGFGLNIFSHRDGFTIWSIRLIPLGGYVGGFGWSNVNPFPAPISESFRK   81 (192)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTT--B--EEE------------------------------------------------
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            4678899999999999999999999986552111  100               0       1     133455555567


Q ss_pred             CCchhhhhhhhhhhHHHHHHHHHHHHHHHhhCCCCCCCchhHHhHHhhhcccchhHHHHHHHHHHHHHHHhhh
Q 020890          246 PNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLL  318 (320)
Q Consensus       246 p~r~alfdIaiAGPlag~~~al~~~~~Gl~ls~~~~gg~~~l~lg~~l~~g~~~~Pl~~~gWvGl~vt~l~l~  318 (320)
                      .+|+..+.+++|||+++++++++++.+....+....            ......+.+.+.+|+.+...++||+
T Consensus        82 ~~~~~~~~i~laGp~~nllla~i~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~n~~l~~~Nll  142 (192)
T PF02163_consen   82 RSRWKRILIALAGPLANLLLAIIALLLLYLLSGSVG------------WSSFFAEFLFFFAWLNFILALFNLL  142 (192)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHTTS-------------------EETTEEHHHHHHHHHHHHHHHTTS
T ss_pred             CCccceEEEEEEcHHHHHHHHHHHHHHHHHHhcccc------------ccHHHHHHHHHHHHHHHHHhhhhcc
Confidence            778889999999999999999888776654443111            2235677888899999999999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=98.74  E-value=2.4e-08  Score=95.55  Aligned_cols=76  Identities=16%  Similarity=0.058  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccccc----ceeeecCCC---CCCchhhhhhhhhhhHHHH
Q 020890          191 NVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCL----GVMNNYESL---LPNKKALFDIPVARTASAY  263 (320)
Q Consensus       191 ~glp~al~ll~iL~~HElGH~~~Ar~~gv~~slPyFIP~~~lGtf----Gav~~~~s~---~p~r~alfdIaiAGPlag~  263 (320)
                      ....+.++++.++.+||+||.++|+++|+++.      .+.+..|    ||+.+..+.   ..++++.+-|+.|||++++
T Consensus       126 ~~~~~l~al~isvvvHElgHal~A~~~gi~V~------~iGl~l~~~~pGa~ve~~~e~~~~~~~~~~l~Ia~AGp~~Nl  199 (277)
T cd06162         126 QLGYYFTALLISGVVHEMGHGVAAVREQVRVN------GFGIFFFIIYPGAYVDLFTDHLNLISPVQQLRIFCAGVWHNF  199 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeec------eEEEeeeeccCeeEEeecccccccCChhhhhheehhhHHHHH
Confidence            44445678899999999999999999999986      4333334    999998543   3566778999999999999


Q ss_pred             HHHHHHHHH
Q 020890          264 LTSLALAVA  272 (320)
Q Consensus       264 ~~al~~~~~  272 (320)
                      +++++++++
T Consensus       200 vLa~i~~~l  208 (277)
T cd06162         200 VLGLVGYLL  208 (277)
T ss_pred             HHHHHHHHH
Confidence            999887653

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>TIGR00054 RIP metalloprotease RseP

Probab=98.48  E-value=3.4e-07  Score=91.35  Aligned_cols=82  Identities=17%  Similarity=0.090  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccc-------cccccc-------cccccccceeeecCCC--------C-----
Q 020890          193 VPLFGGLITILGVSEISTRLTAARYGVKLS-------PSFLVP-------SNWTGCLGVMNNYESL--------L-----  245 (320)
Q Consensus       193 lp~al~ll~iL~~HElGH~~~Ar~~gv~~s-------lPyFIP-------~~~lGtfGav~~~~s~--------~-----  245 (320)
                      +.+.+.+..++++||+|||++||++|+++.       +|.|==       .+-+--+|++.+|...        +     
T Consensus         7 i~~~~~~~~~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~plGg~v~~~g~~~~~~~~~~~~~~~   86 (420)
T TIGR00054         7 LASILALAVLIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPLGGYVKMKGLDKEMEVKPPETDGD   86 (420)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecCcceEeeccCCcccccCCcchhhh
Confidence            334677788999999999999999999975       111100       0113446999999411        1     


Q ss_pred             ----CCchhhhhhhhhhhHHHHHHHHHHHHHHH
Q 020890          246 ----PNKKALFDIPVARTASAYLTSLALAVAAF  274 (320)
Q Consensus       246 ----p~r~alfdIaiAGPlag~~~al~~~~~Gl  274 (320)
                          .++...+-|.+|||++.++++++++.+-+
T Consensus        87 ~f~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~~  119 (420)
T TIGR00054        87 LFNNKSVFQKAIIIFAGPLANFIFAIFVYIFIS  119 (420)
T ss_pred             hhccCCHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence                24455677999999999999998877544

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=98.43  E-value=9.1e-07  Score=79.35  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccccc----cccccc---ccccc---------cceeee-c----CCCCCCchhhhh
Q 020890          195 LFGGLITILGVSEISTRLTAARYGVKLSP----SFLVPS---NWTGC---------LGVMNN-Y----ESLLPNKKALFD  253 (320)
Q Consensus       195 ~al~ll~iL~~HElGH~~~Ar~~gv~~sl----PyFIP~---~~lGt---------fGav~~-~----~s~~p~r~alfd  253 (320)
                      ..++++.++..||+||.++|+++|-++.-    -.+=|.   -.+|+         .++..+ .    +...++|++.+-
T Consensus         4 ~~~~~~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~~~~~~~r~~~~~   83 (181)
T cd06158           4 VIIAVLLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNPRNFKNPRRGMLL   83 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccChHhhcccHhhHhh
Confidence            45678889999999999999999998631    111121   00110         133322 1    112245678999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHh
Q 020890          254 IPVARTASAYLTSLALAVAAFV  275 (320)
Q Consensus       254 IaiAGPlag~~~al~~~~~Gl~  275 (320)
                      |++|||+++++++++++++...
T Consensus        84 valAGP~~n~~la~i~~~~~~~  105 (181)
T cd06158          84 VSLAGPLSNLLLALLFALLLRL  105 (181)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999887655443

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.41  E-value=6.6e-07  Score=89.85  Aligned_cols=82  Identities=16%  Similarity=0.075  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccc----------------ccccccceeeecCCCCC---------
Q 020890          192 VVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPS----------------NWTGCLGVMNNYESLLP---------  246 (320)
Q Consensus       192 glp~al~ll~iL~~HElGH~~~Ar~~gv~~slPyFIP~----------------~~lGtfGav~~~~s~~p---------  246 (320)
                      -+.+.+++..++.+||+|||++||..||++.- |.|-+                +-+--+|++.+|...-+         
T Consensus         7 i~~fil~l~~li~vHElGHfl~Ar~~gv~V~~-FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~~~   85 (449)
T PRK10779          7 LAAFIVALGVLITVHEFGHFWVARRCGVRVER-FSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPELRH   85 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE-EEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhhhh
Confidence            44566777788899999999999999999862 11111                11223688888865421         


Q ss_pred             ------CchhhhhhhhhhhHHHHHHHHHHHHHHH
Q 020890          247 ------NKKALFDIPVARTASAYLTSLALAVAAF  274 (320)
Q Consensus       247 ------~r~alfdIaiAGPlag~~~al~~~~~Gl  274 (320)
                            ++.+-+-|.+|||++.+++|++++.+-+
T Consensus        86 ~~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~~  119 (449)
T PRK10779         86 HAFNNKTVGQRAAIIAAGPIANFIFAIFAYWLVF  119 (449)
T ss_pred             hhhccCCHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence                  1223455999999999999988765544

>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]

Probab=97.27  E-value=0.0012  Score=61.02  Aligned_cols=70  Identities=21%  Similarity=0.180  Sum_probs=58.8

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccceeeecCCCCCCchhhhhhhhhhhHHHHH
Q 020890          189 LANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYL  264 (320)
Q Consensus       189 ~~~glp~al~ll~iL~~HElGH~~~Ar~~gv~~slPyFIP~~~lGtfGav~~~~s~~p~r~alfdIaiAGPlag~~  264 (320)
                      +.++....++++..+..||+||+..++++++++.      .+.++.+|++..++..+.+++..++++.+||+++..
T Consensus        41 ~~~~~~~~~~l~~rl~l~~~gh~~~~~~~~~~l~------~~~i~~~~g~~~~~~~~v~~~~~~~~~~~g~lvs~a  110 (230)
T COG1994          41 LGDGTAAFVGLAHRLVLHPLGHSDEAGRLGLKLL------LALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLA  110 (230)
T ss_pred             HhhhHHHHHHHhHHHhhhHhhHHHHHHHHHHHHH------HHHHHhccceeeecCcCcCHHHHhhhhccchhHHHH
Confidence            6667777777889999999999999999999873      544545888999999999999999988777766665

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=97.01  E-value=0.0015  Score=59.49  Aligned_cols=66  Identities=21%  Similarity=0.136  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHhCcccccccccccccccccceeeecCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHH
Q 020890          201 TILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAA  273 (320)
Q Consensus       201 ~iL~~HElGH~~~Ar~~gv~~slPyFIP~~~lGtfGav~~~~s~~p~r~alfdIaiAGPlag~~~al~~~~~G  273 (320)
                      ....+||+||.++|.-.|-+++--..-|.     -++.+..+.  +++-..+-++.|||++..+.+..++..+
T Consensus        23 l~t~~HE~gHal~a~l~G~~v~~i~l~~~-----~~G~~~~~~--~~~~~~~~i~~aGyl~~~l~g~~~~~~~   88 (200)
T PF13398_consen   23 LVTFVHELGHALAALLTGGRVKGIVLFPD-----GSGVTVSSG--PSGIGRFLIALAGYLGPALFGLLLLWLL   88 (200)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcceEEEEeC-----CCceEEEec--CCCcchhHHhcccchHHHHHHHHHHHHH
Confidence            34889999999999999998863333343     577887777  6666678899999999999987776666

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=96.77  E-value=0.0012  Score=63.83  Aligned_cols=119  Identities=15%  Similarity=0.006  Sum_probs=88.7

Q ss_pred             HHHHHHHH--HHHHHHHHHHhCcccccccccccccccccceeee--cCCCCCC-----chhhhhhhhhhhHHHHHHHHHH
Q 020890          199 LITILGVS--EISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN--YESLLPN-----KKALFDIPVARTASAYLTSLAL  269 (320)
Q Consensus       199 ll~iL~~H--ElGH~~~Ar~~gv~~slPyFIP~~~lGtfGav~~--~~s~~p~-----r~alfdIaiAGPlag~~~al~~  269 (320)
                      .+.+.+.|  +..|+.+++.++..-..|+++| ...|..++.++  ..+..|+     ++.++++..+++++ ..+.-..
T Consensus       181 ~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~~~i~~~~i~~~p~~~~~~~~~~~~~~~~~~i~-~~v~~~~  258 (375)
T COG0750         181 LLTILVIRLDGEAHAVAAEIIKSLGLTPVVIP-LKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVG-LAVEKTG  258 (375)
T ss_pred             ceEEEEEeccceeeeccccceeeEeeecceec-cCCCCEEEEeeeeeeeeccCCCCccceeeeccCHHHHHH-HHHHHHH
Confidence            57888899  9999999999999999999998 77888888775  6667777     89999999999998 4455455


Q ss_pred             HHHHHhhCC-----------CC-CCCchhHHhHHhhhcccchhHHHHHHHHHHHHHHHhhhc
Q 020890          270 AVAAFVADG-----------SF-NGGDNALMLLDLIRMTLEMYCLMLWKESEFLVIRLLLLV  319 (320)
Q Consensus       270 ~~~Gl~ls~-----------~~-~gg~~~l~lg~~l~~g~~~~Pl~~~gWvGl~vt~l~l~~  319 (320)
                      .++++.++.           +. .|..+....+.........||+.+.+|+++.++++||+-
T Consensus       259 ~~~~~~~~~l~~~~~~~~~~~~l~Gpi~i~~~~~~~~~~~~~~~l~~~~~lsi~lg~lNllP  320 (375)
T COG0750         259 RLVKLTLKMLKKLITGDLSLKNLSGPIGIAKIAGAAASLGLINLLFFLALLSINLGILNLLP  320 (375)
T ss_pred             HHHHHHHHHHHHheecccccccccCceehhhhhhHHHhhHHHHHHHHHHHHHHHHHHHhccC
Confidence            555554441           11 122222333332223568999999999999999999973

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=95.21  E-value=0.059  Score=52.07  Aligned_cols=80  Identities=19%  Similarity=0.225  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCccccc------------------ccccccccccccceeeecCCCCCC------
Q 020890          192 VVPLFGGLITILGVSEISTRLTAARYGVKLSP------------------SFLVPSNWTGCLGVMNNYESLLPN------  247 (320)
Q Consensus       192 glp~al~ll~iL~~HElGH~~~Ar~~gv~~sl------------------PyFIP~~~lGtfGav~~~~s~~p~------  247 (320)
                      -..+.+.+......||+||+|.||+.++++..                  +|.+..+   .+|++.+|......      
T Consensus         5 ~i~~i~~~~~lv~~he~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~---plggyv~~~~~~~~~~~~~~   81 (375)
T COG0750           5 IIAFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAI---PLGGYVKMLGEDAEEVVLKG   81 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeec---CccceEEEecCccccccccc
Confidence            34566777788999999999999999998752                  1222222   23444444333222      


Q ss_pred             ---chh---------hhhhhhhhhHHHHHHHHHHHHHHH
Q 020890          248 ---KKA---------LFDIPVARTASAYLTSLALAVAAF  274 (320)
Q Consensus       248 ---r~a---------lfdIaiAGPlag~~~al~~~~~Gl  274 (320)
                         +..         -+-+-++||+..++.++.+.+...
T Consensus        82 ~~~~~~~f~~~~~~~~~~~~~~Gp~~n~i~~~~~~~~~~  120 (375)
T COG0750          82 PEPRPRAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLF  120 (375)
T ss_pred             cCcchhhhhcccccchhheeechHHHHHHHHHHHHHhhh
Confidence               112         234778999999998777665554

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=93.08  E-value=0.15  Score=51.87  Aligned_cols=121  Identities=19%  Similarity=0.149  Sum_probs=71.1

Q ss_pred             hhHHH-HHHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccceeeecCCC----CCCchhhhhhhhhhhHHHHHH
Q 020890          191 NVVPL-FGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESL----LPNKKALFDIPVARTASAYLT  265 (320)
Q Consensus       191 ~glp~-al~ll~iL~~HElGH~~~Ar~~gv~~slPyFIP~~~lGtfGav~~~~s~----~p~r~alfdIaiAGPlag~~~  265 (320)
                      .+++| ...++..+.+|||||.|+|.+.||++.  +|==.+..=.=||++.++..    .++=++ ..|--||-.=.++.
T Consensus       121 ~~I~yf~t~lvi~~vvHElGHalAA~segV~vn--gfgIfi~aiyPgafvdl~~dhLqsl~~fr~-LrIfcAGIWHNfvf  197 (484)
T KOG2921|consen  121 SGIAYFLTSLVITVVVHELGHALAAASEGVQVN--GFGIFIAAIYPGAFVDLDNDHLQSLPSFRA-LRIFCAGIWHNFVF  197 (484)
T ss_pred             ccchhhhhhHHHHHHHHHhhHHHHHHhcCceee--eeEEEEEEEcCchhhhhhhhHHhhcchHHH-HHHHhhhHHHHHHH
Confidence            44444 456677889999999999999999875  11000111223677766542    223233 56888999999999


Q ss_pred             HHHHHHH----HHhhCCCCCCC----------------chhHHhHHhhhc--ccchhHHHHHHHHHHHHHHHh
Q 020890          266 SLALAVA----AFVADGSFNGG----------------DNALMLLDLIRM--TLEMYCLMLWKESEFLVIRLL  316 (320)
Q Consensus       266 al~~~~~----Gl~ls~~~~gg----------------~~~l~lg~~l~~--g~~~~Pl~~~gWvGl~vt~l~  316 (320)
                      |+.|.+.    +..+||-+.-|                .-.+..||++..  |-.+|-+  .-|...+-|.+|
T Consensus       198 allc~lal~~lpViLsPfya~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v--~dW~ecl~tsl~  268 (484)
T KOG2921|consen  198 ALLCVLALFLLPVILSPFYAHGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV--SDWLECLATSLD  268 (484)
T ss_pred             HHHHHHHHHhhhHhhchhhhcCceEEEEeccccCCCcCcccCCccceEEecCCcccCCH--HHHHHHHHhhcc
Confidence            9877543    44555522111                113345666553  4444443  456666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	99.43

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=99.43  E-value=2.4e-13  Score=123.87  Aligned_cols=104  Identities=19%  Similarity=0.290  Sum_probs=81.8

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccceeeecCCCCCCchhhhhhhhhhhHHHHHHHHH
Q 020890          189 LANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLA  268 (320)
Q Consensus       189 ~~~glp~al~ll~iL~~HElGH~~~Ar~~gv~~slPyFIP~~~lGtfGav~~~~s~~p~r~alfdIaiAGPlag~~~al~  268 (320)
                      +..| .++++++.++.+||+||+++||++|+++..+.++|      ||+++++++.+  |++.++|++|||+++++++++
T Consensus        38 ~~~g-~~~l~l~~~v~~HElgH~~~A~~~G~~~~~i~l~p------~Gg~~~~~~~~--~~~~~~ValAGPl~nl~la~~  108 (224)
T 3b4r_A           38 IFWA-VLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP------IGGVAMMDKIP--KEGELRIGIAGPLVSFIIGIV  108 (224)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECS------SSCBCCCCCCC--SSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCccccEEEEE------eeeEEEcccCC--ccceeeeeeeHHHHHHHHHHH
Confidence            4445 88999999999999999999999999998766666      58999998754  488999999999999999988


Q ss_pred             HHHHHHhhCCCCCCCchhHHhHHhhhcccchhH-HHHHHHHHHHHHHHhhh
Q 020890          269 LAVAAFVADGSFNGGDNALMLLDLIRMTLEMYC-LMLWKESEFLVIRLLLL  318 (320)
Q Consensus       269 ~~~~Gl~ls~~~~gg~~~l~lg~~l~~g~~~~P-l~~~gWvGl~vt~l~l~  318 (320)
                      ++++....+.                 +...+. +...+|+++++++.||+
T Consensus       109 ~~~~~~~~~~-----------------~~~~~~~~~~~~~iNl~l~~fNLl  142 (224)
T 3b4r_A          109 LLIVSQFFDI-----------------NINGYPLLYTLSLLNLMLGGFNLI  142 (224)
T ss_dssp             HHHHTTTCCC-----------------EETTEEHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHccC-----------------cchHHHHHHHHHHHHHHHHHHHcc
Confidence            8666432211                 000022 34579999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00