Citrus Sinensis ID: 020907

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLIYQIYCKGVIVV
cccccccccccccHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccc
cccccccccccccccHHHHccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHccccccccHHHHcccEEHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEc
madrffpnempetsLAVAAHETTTAQDSLTKLlslpytavsDTLKNSALALKQTVVNetwgvsgkrvqdytLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEAcdsasrdsgrvtFICGRAGVCALGAVLAKHAGDERLLDHYLTKfkeiklpsdlpnellygRVGFLWACSFLnkhmgkdtiSTAQMRAVVDEIIKAGRRlanrgrcplmyewhgkkywgaahGLAGIMHVLMDmelkpdeveDVKGTLRYMIknrfpsgnypssegsesdrlvhwchgapgVTLTLAKAAEVILDEHCHFHCCLIYQIYCKGVIVV
madrffpnempETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTvvnetwgvsgkrvqDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKnrfpsgnypsSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLIYQIYCKGVIVV
MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLIYQIYCKGVIVV
****************************LTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKN****************RLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLIYQIYCKGVIV*
*ADRFFPNEMPETSLAVA***********TKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDS********TFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLIYQIYCKGVIVV
********EMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSG***********RLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLIYQIYCKGVIVV
***RFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLIYQIYCKGVIVV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLIYQIYCKGVIVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query320 2.2.26 [Sep-21-2011]
Q9JJK2450 LanC-like protein 2 OS=Mu yes no 0.931 0.662 0.368 2e-45
Q9NS86450 LanC-like protein 2 OS=Ho yes no 0.812 0.577 0.377 4e-43
O43813399 LanC-like protein 1 OS=Ho no no 0.937 0.751 0.345 1e-39
Q9QX69399 LanC-like protein 1 OS=Ra no no 0.9 0.721 0.341 3e-39
O89112399 LanC-like protein 1 OS=Mu no no 0.896 0.719 0.336 4e-39
Q90ZL2405 LanC-like protein 1 OS=Da no no 0.887 0.701 0.322 6e-34
Q9Y0Y7419 LanC-like protein 3 homol yes no 0.790 0.603 0.274 2e-27
Q29HZ1420 LanC-like protein 3 homol no no 0.590 0.45 0.320 2e-25
Q8CD19420 LanC-like protein 3 OS=Mu no no 0.687 0.523 0.314 6e-24
Q6ZV70420 LanC-like protein 3 OS=Ho no no 0.687 0.523 0.318 7e-24
>sp|Q9JJK2|LANC2_MOUSE LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1 Back     alignment and function desciption
 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 171/326 (52%), Gaps = 28/326 (8%)

Query: 1   MADRFFPNEMPETSLAVAAHETTTAQDSLT-KLLSLPYTA------------VSDTLKNS 47
           M +R FPN  P+   A +A          T ++  LP T             V + +K  
Sbjct: 18  MEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDPGLPFHPNGKIVPNFIKRI 77

Query: 48  ALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACD 107
              +K  +     G+      D + YTG  G A L  + Y+VT +   L    D V+   
Sbjct: 78  QTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTGDQTYLLRSLDYVKR-- 135

Query: 108 SASRDSGR-VTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK-----LPSDLPNE 161
           +    SGR VTF+CG AG  A+GAV+      E      +TK  ++        S+LP+E
Sbjct: 136 TLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPDE 195

Query: 162 LLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWH 217
           LLYGR G+L+A  +LN  +G  T+    ++ VV  II++G+ L+   R    CPL+Y+WH
Sbjct: 196 LLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWH 255

Query: 218 GKKYWGAAHGLAGIMHVLMDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESD 274
            K+Y GAAHG+AGI ++LM  E K D+    E VK ++ Y+   +F SGNYPSS  +E+D
Sbjct: 256 RKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETD 315

Query: 275 RLVHWCHGAPGVTLTLAKAAEVILDE 300
           RLVHWCHGAPGV   L +A +V  +E
Sbjct: 316 RLVHWCHGAPGVIHVLLQAYQVFKEE 341
Necessary for abscisic acid (ABA) binding on the cell membrane and activation of the ABA signaling pathway in granulocytes.
Mus musculus (taxid: 10090)
>sp|Q9NS86|LANC2_HUMAN LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1 Back     alignment and function description
>sp|O43813|LANC1_HUMAN LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1 Back     alignment and function description
>sp|Q9QX69|LANC1_RAT LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2 Back     alignment and function description
>sp|O89112|LANC1_MOUSE LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1 Back     alignment and function description
>sp|Q90ZL2|LANC1_DANRE LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y0Y7|LANC3_DROME LanC-like protein 3 homolog OS=Drosophila melanogaster GN=CG2061 PE=1 SV=1 Back     alignment and function description
>sp|Q29HZ1|LANC3_DROPS LanC-like protein 3 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15215 PE=3 SV=1 Back     alignment and function description
>sp|Q8CD19|LANC3_MOUSE LanC-like protein 3 OS=Mus musculus GN=Lancl3 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
225461385407 PREDICTED: lanC-like protein 2 [Vitis vi 0.934 0.734 0.768 1e-135
255587364419 catalytic, putative [Ricinus communis] g 0.937 0.715 0.743 1e-132
356544018405 PREDICTED: lanC-like protein 2-like [Gly 0.931 0.735 0.743 1e-132
224128201417 predicted protein [Populus trichocarpa] 0.934 0.717 0.758 1e-132
449446947412 PREDICTED: lanC-like protein 2-like [Cuc 0.937 0.728 0.711 1e-124
297853060410 predicted protein [Arabidopsis lyrata su 0.928 0.724 0.706 1e-123
145336679410 G protein coupled receptor [Arabidopsis 0.925 0.721 0.692 1e-120
225446932412 PREDICTED: lanC-like protein 2 [Vitis vi 0.937 0.728 0.681 1e-117
147768321412 hypothetical protein VITISV_008093 [Viti 0.937 0.728 0.678 1e-116
146233385 443 abscisic acid ABA receptor [Populus tric 0.765 0.553 0.816 1e-116
>gi|225461385|ref|XP_002284781.1| PREDICTED: lanC-like protein 2 [Vitis vinifera] gi|302143043|emb|CBI20338.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/303 (76%), Positives = 258/303 (85%), Gaps = 4/303 (1%)

Query: 1   MADRFFPNEMPETSLAVAAHETT--TAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNE 58
           MADRFFPNEMPET  AV A ET+   + DSL KLLS PY  +S   + +AL +K  VV E
Sbjct: 1   MADRFFPNEMPET--AVEAEETSAQNSGDSLIKLLSFPYETLSQQFERAALDVKDAVVRE 58

Query: 59  TWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTF 118
           TW ++GKRVQDY LYTGALGTA+LLFKAYQ+T N ++L +C +IV+ACDSAS  SGRVTF
Sbjct: 59  TWALAGKRVQDYALYTGALGTAFLLFKAYQITNNRDDLNVCSEIVKACDSASATSGRVTF 118

Query: 119 ICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNK 178
           ICG+AGV A+GAV AKHAGDERLL  YLT+FKEIKLP DLPNELLYGR GFLWACSFLNK
Sbjct: 119 ICGQAGVYAIGAVAAKHAGDERLLGRYLTQFKEIKLPKDLPNELLYGRGGFLWACSFLNK 178

Query: 179 HMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDM 238
           H+GKDTIS+A+MRA V EIIK+GR +A R RCPLMYEWHGKKYWGAAHGLAG+MHVLM M
Sbjct: 179 HIGKDTISSARMRASVKEIIKSGREMAKRERCPLMYEWHGKKYWGAAHGLAGVMHVLMHM 238

Query: 239 ELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVIL 298
           ELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGV LTL KAAEV  
Sbjct: 239 ELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVALTLLKAAEVFG 298

Query: 299 DEH 301
           D+ 
Sbjct: 299 DKE 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255587364|ref|XP_002534246.1| catalytic, putative [Ricinus communis] gi|223525647|gb|EEF28136.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356544018|ref|XP_003540453.1| PREDICTED: lanC-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224128201|ref|XP_002329106.1| predicted protein [Populus trichocarpa] gi|222869775|gb|EEF06906.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446947|ref|XP_004141231.1| PREDICTED: lanC-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297853060|ref|XP_002894411.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297340253|gb|EFH70670.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145336679|ref|NP_175700.2| G protein coupled receptor [Arabidopsis thaliana] gi|332194747|gb|AEE32868.1| G protein coupled receptor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225446932|ref|XP_002263345.1| PREDICTED: lanC-like protein 2 [Vitis vinifera] gi|297739117|emb|CBI28768.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147768321|emb|CAN64758.1| hypothetical protein VITISV_008093 [Vitis vinifera] Back     alignment and taxonomy information
>gi|146233385|gb|ABQ14360.1| abscisic acid ABA receptor [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
TAIR|locus:2011466410 GPCR "G protein coupled recept 0.925 0.721 0.692 2e-111
TAIR|locus:2051449405 GCL2 "GCR2-like 2" [Arabidopsi 0.915 0.723 0.649 2e-104
TAIR|locus:2171800433 GCL1 "GCR2-like 1" [Arabidopsi 0.834 0.616 0.440 2.5e-58
ZFIN|ZDB-GENE-070209-191435 zgc:158293 "zgc:158293" [Danio 0.934 0.687 0.358 1.9e-44
UNIPROTKB|I3LIW1412 LANCL2 "Uncharacterized protei 0.721 0.560 0.426 3.9e-44
RGD|1310809450 Lancl2 "LanC lantibiotic synth 0.809 0.575 0.394 1.3e-43
MGI|MGI:1919085450 Lancl2 "LanC (bacterial lantib 0.809 0.575 0.394 2.2e-43
UNIPROTKB|A6QPG6433 LANCL2 "Uncharacterized protei 0.909 0.672 0.364 7.3e-43
UNIPROTKB|Q9NS86450 LANCL2 "LanC-like protein 2" [ 0.721 0.513 0.413 1.5e-42
UNIPROTKB|E1C3R4455 LANCL2 "Uncharacterized protei 0.721 0.507 0.401 1.9e-42
TAIR|locus:2011466 GPCR "G protein coupled receptor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
 Identities = 207/299 (69%), Positives = 246/299 (82%)

Query:     1 MADRFFPNEMPE---TSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVN 57
             M +RFF NEMPE     L+      T  +DSLTKLLSLPY + S+ L   AL++K  VV 
Sbjct:     1 MGERFFRNEMPEFVPEDLSGEEETVTECKDSLTKLLSLPYKSFSEKLHRYALSIKDKVVW 60

Query:    58 ETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVT 117
             ETW  SGKRV+DY LYTG LGTAYLLFK+YQVT+N+++LKLC + VEACD ASRDS RVT
Sbjct:    61 ETWERSGKRVRDYNLYTGVLGTAYLLFKSYQVTRNEDDLKLCLENVEACDVASRDSERVT 120

Query:   118 FICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLN 177
             FICG AGVCALGAV AK  GD++L D YL +F+ I+LPSDLP ELLYGR G+LWAC FLN
Sbjct:   121 FICGYAGVCALGAVAAKCLGDDQLYDRYLARFRGIRLPSDLPYELLYGRAGYLWACLFLN 180

Query:   178 KHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMD 237
             KH+G+++IS+ +MR+VV+EI +AGR+L N+G CPLMYEWHGK+YWGAAHGLAGIM+VLM 
Sbjct:   181 KHIGQESISSERMRSVVEEIFRAGRQLGNKGTCPLMYEWHGKRYWGAAHGLAGIMNVLMH 240

Query:   238 MELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEV 296
              EL+PDE++DVKGTL YMI+NRFPSGNY SSEGS+SDRLVHWCHGAPGV LTL KAA+V
Sbjct:   241 TELEPDEIKDVKGTLSYMIQNRFPSGNYLSSEGSKSDRLVHWCHGAPGVALTLVKAAQV 299
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
GO:0009787 "regulation of abscisic acid mediated signaling pathway" evidence=IMP
GO:0010231 "maintenance of seed dormancy" evidence=IMP
GO:0010427 "abscisic acid binding" evidence=IDA
GO:0019898 "extrinsic to membrane" evidence=ISS
TAIR|locus:2051449 GCL2 "GCR2-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171800 GCL1 "GCR2-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070209-191 zgc:158293 "zgc:158293" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LIW1 LANCL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1310809 Lancl2 "LanC lantibiotic synthetase component C-like 2 (bacterial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1919085 Lancl2 "LanC (bacterial lantibiotic synthetase component C)-like 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6QPG6 LANCL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NS86 LANCL2 "LanC-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3R4 LANCL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027635001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (407 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
cd04794343 cd04794, euk_LANCL, eukaryotic Lanthionine synthet 1e-83
pfam05147352 pfam05147, LANC_like, Lanthionine synthetase C-lik 2e-70
cd04434343 cd04434, LanC_like, LanC-like proteins 3e-42
cd04792825 cd04792, LanM-like, LanM-like proteins 7e-12
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 7e-09
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 5e-04
cd04793382 cd04793, LanC, LanC is the cyclase enzyme of the l 0.001
>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information 
 Score =  255 bits (654), Expect = 1e-83
 Identities = 107/239 (44%), Positives = 149/239 (62%), Gaps = 15/239 (6%)

Query: 73  YTGALGTAYLLFKAYQV----TKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCAL 128
           YTGA G AYL  + Y+V    T +   L    + ++A   A  D  R++F+CG AGV A+
Sbjct: 1   YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAV 60

Query: 129 GAVLAKHAGDERLLDHYLTKFKEI-----KLPSDLPNELLYGRVGFLWACSFLNKHMGKD 183
           GA +  +  DE  +D +L+KF ++        S LP+ELLYGR G+L+A  FLNK  G  
Sbjct: 61  GAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLPDELLYGRAGYLYALLFLNKKFGFK 120

Query: 184 TISTAQMRAVVDEIIKAGRRLA--NRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMD---M 238
            I ++ ++++ D I+++GR  A   R  CPLMYEWHGK+Y GAAHGLAGI+++L+     
Sbjct: 121 KIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPLF 180

Query: 239 ELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSES-DRLVHWCHGAPGVTLTLAKAAEV 296
            LKP     +K +L Y++  +FPSGN+PSS G+   DRLV WCHGAPG+   LAKA  V
Sbjct: 181 LLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLV 239

This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs. Length = 343
>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein Back     alignment and domain information
>gnl|CDD|239881 cd04434, LanC_like, LanC-like proteins Back     alignment and domain information
>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 320
KOG2787403 consensus Lanthionine synthetase C-like protein 1 100.0
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 100.0
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 99.98
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 99.97
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 99.96
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 99.95
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 99.95
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 99.91
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 99.89
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 99.87
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 99.87
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 99.86
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 99.8
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 99.77
KOG2787403 consensus Lanthionine synthetase C-like protein 1 99.75
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 99.59
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 96.88
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 96.8
COG1331667 Highly conserved protein containing a thioredoxin 96.3
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 96.2
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 95.38
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 95.34
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 94.74
COG1331667 Highly conserved protein containing a thioredoxin 94.68
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 91.24
cd00249 384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 86.33
TIGR02474 290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 85.5
PLN03012759 Camelliol C synthase 82.69
PLN02993763 lupeol synthase 82.06
PLN02993763 lupeol synthase 81.72
PF09492 289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 81.05
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3e-73  Score=500.86  Aligned_cols=310  Identities=53%  Similarity=0.919  Sum_probs=275.2

Q ss_pred             CCCCCCCCCCCCCchhhhcccccchhhhhhhhccCCchhhHHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHH
Q 020907            1 MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTA   80 (320)
Q Consensus         1 m~~r~~~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGia   80 (320)
                      |+.|+|+|||||...+...+..+ ..++      .+..-+++.+++.+..+++.+++.+|+..+..+.|.++|+|++|||
T Consensus         1 me~r~~~np~pd~a~G~~e~~~~-~~~e------~~~~~~~e~~~r~~~~ikd~~~~~~~~~S~d~~~d~tlYtG~~GiA   73 (403)
T KOG2787|consen    1 MERRAFVNPFPDDASGENETVGS-EPDE------PTGKLFTEFIKRLATKIKDLVVEMTWGKSGDEVRDGTLYTGWLGIA   73 (403)
T ss_pred             CcccccCCCCcccccCCCccccC-CCcc------cccccHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCceeechHHHH
Confidence            99999999999986653211110 0010      1222456778888888999999999987666689999999999999


Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCcccccCchhHHHHHHHHHHHhCCHHHHHHHHHHhhhccC-CCCCC
Q 020907           81 YLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKL-PSDLP  159 (320)
Q Consensus        81 l~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~G~aGi~al~~~i~~~~g~~~~~~~~l~~~~~~~~-~~~~~  159 (320)
                      ++++++|++|.|..++..+.++++++....++.++++|+||.+|++++.+++++.+|+++..+.++.++.++.. +++.|
T Consensus        74 fl~~kly~vTrd~~~L~~~~e~Vk~~~~~~~s~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~~~~dlp  153 (403)
T KOG2787|consen   74 FLYLKLYEVTRDLYDLLLCLEIVKACLVASRSSRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRLCSSDLP  153 (403)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhcccCCcccc
Confidence            99999999999999999999999999876677789999999999999999999999999999999999988865 77899


Q ss_pred             ccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcC--CCCcceeecCcccCccccchHHHHHHHHc
Q 020907          160 NELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRG--RCPLMYEWHGKKYWGAAHGLAGIMHVLMD  237 (320)
Q Consensus       160 ~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~--~~~l~~~w~~~~ylG~aHG~aGIl~~Ll~  237 (320)
                      +|++||||||||+++++++++|+++++++.|++|++.|+.+|+.++++.  +|||||+||+++|+|+|||++||+++||+
T Consensus       154 ~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~  233 (403)
T KOG2787|consen  154 DELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMD  233 (403)
T ss_pred             HHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999885  49999999999999999999999999999


Q ss_pred             cCCCc---hhHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH------
Q 020907          238 MELKP---DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL------  308 (320)
Q Consensus       238 ~~~~~---~~~~~i~~~l~~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~------  308 (320)
                      ..+.+   ...++|+++++|+++++||+||||++.+++.|++|||||||||+++++.+|++||++++|+++|.+      
T Consensus       234 ~~L~~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW  313 (403)
T KOG2787|consen  234 PTLKVDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVW  313 (403)
T ss_pred             CCCCCcchhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            87643   358999999999999999999999999989999999999999999999999999999999999987      


Q ss_pred             ------hhhhccccc
Q 020907          309 ------IYQIYCKGV  317 (320)
Q Consensus       309 ------~~~~~c~~~  317 (320)
                            ..+.-|||+
T Consensus       314 ~rGlLkkg~GichGv  328 (403)
T KOG2787|consen  314 KRGLLKKGVGICHGV  328 (403)
T ss_pred             HhhhhhcCCcccccc
Confidence                  335667775

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
3e6u_A411 Crystal Structure Of Human Lancl1 Length = 411 9e-41
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1 Length = 411 Back     alignment and structure 
Iteration: 1

 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/327 (34%), Positives = 169/327 (51%), Gaps = 27/327 (8%)
Query: 1   MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETW 60
           MA R FPN   + + ++A      A   LT          S  L N    L Q +     
Sbjct: 13  MAQRAFPNPYADYNKSLA-EGYFDAAGRLT-------PEFSQRLTNKIRELLQQMER--- 61
Query: 61  GVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIV-EACDSASRDSGRVTFI 119
           G+     +D T YTG  G A L    Y V  +   L+L    V ++ +  ++ S  +TF+
Sbjct: 62  GLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRS--ITFL 119
Query: 120 CGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI-KLPSDLPNELLYGRVGFLWACSFLNK 178
           CG AG  A+ AVL     +E+  +  +T+   + K+    PNE+LYGR+G+++A  F+NK
Sbjct: 120 CGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNK 179
Query: 179 HMGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHV 234
           + G + I  + ++ + + I+ +G  LA +     + PLMYEW+ + Y GAAHGLAGI + 
Sbjct: 180 NFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYY 239
Query: 235 LMDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLA 291
           LM   L+  + +    VK ++ Y+ + +FPSGNYP   G   D LVHWCHGAPGV   L 
Sbjct: 240 LMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLI 299
Query: 292 KAAEVILDEHCHFHCCLIYQIYCKGVI 318
           +A +V  +E    + C  YQ  C  VI
Sbjct: 300 QAYKVFREEK---YLCDAYQ--CADVI 321

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 3e-74
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 3e-04
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 2e-36
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411 Back     alignment and structure
 Score =  233 bits (594), Expect = 3e-74
 Identities = 101/309 (32%), Positives = 156/309 (50%), Gaps = 20/309 (6%)

Query: 1   MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETW 60
           MA R FPN   + + ++A        +             S  L N    +++ +     
Sbjct: 13  MAQRAFPNPYADYNKSLA--------EGYFDAAGRLTPEFSQRLTN---KIRELLQQMER 61

Query: 61  GVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFIC 120
           G+     +D T YTG  G A L    Y V  +   L+L    V+   +       +TF+C
Sbjct: 62  GLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR-SITFLC 120

Query: 121 GRAGVCALGAVLAKHAGDERLLDHYLTKFKEI-KLPSDLPNELLYGRVGFLWACSFLNKH 179
           G AG  A+ AVL     +E+  +  +T+   + K+    PNE+LYGR+G+++A  F+NK+
Sbjct: 121 GDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKN 180

Query: 180 MGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVL 235
            G + I  + ++ + + I+ +G  LA +     + PLMYEW+ + Y GAAHGLAGI + L
Sbjct: 181 FGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYL 240

Query: 236 MDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 292
           M   L+  +      VK ++ Y+ + +FPSGNYP   G   D LVHWCHGAPGV   L +
Sbjct: 241 MQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQ 300

Query: 293 AAEVILDEH 301
           A +V  +E 
Sbjct: 301 AYKVFREEK 309
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411 Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 100.0
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 99.97
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 99.83
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 99.75
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.94
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.94
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.74
1nc5_A373 Hypothetical protein YTER; structural genomics, he 97.55
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.04
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 96.83
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 96.74
3k11_A445 Putative glycosyl hydrolase; structural genomics, 96.2
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 95.95
1nc5_A373 Hypothetical protein YTER; structural genomics, he 95.39
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 94.76
2zzr_A 397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 94.25
2ahf_A 377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 92.99
3k11_A 445 Putative glycosyl hydrolase; structural genomics, 92.34
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 92.19
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 91.86
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 91.41
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 88.31
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 84.22
3gt5_A 402 N-acetylglucosamine 2-epimerase; structural genomi 80.99
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
Probab=100.00  E-value=3.1e-53  Score=405.68  Aligned_cols=305  Identities=34%  Similarity=0.561  Sum_probs=256.2

Q ss_pred             CCCCCCCCCCCCCchhhhcccccchhhhhhhhccCCchhhHHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHH
Q 020907            1 MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTA   80 (320)
Q Consensus         1 m~~r~~~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGia   80 (320)
                      |++|||+||||||+++........++.        ..++|.++++++++++++++.+.. +.  .++.+.++|+|.+||+
T Consensus        13 ~~~r~~~n~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ll~~~~~~~-~~--~~~~~~~lY~G~~Gia   81 (411)
T 3e6u_A           13 MAQRAFPNPYADYNKSLAEGYFDAAGR--------LTPEFSQRLTNKIRELLQQMERGL-KS--ADPRDGTGYTGWAGIA   81 (411)
T ss_dssp             GGGGBCCCCSCCCCHHHHHTTBCTTCC--------BCHHHHHHHHHHHHHHHHHHHHHT-TT--SCTTCCCSSSSHHHHH
T ss_pred             ccCccCCCCCCcccccccccccccccc--------ccHHHHHHHHHHHHHHHHHHHhhc-cc--CCCCCCCeeeChHHHH
Confidence            789999999999997643321111111        124678889999999999986654 32  2688999999999999


Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCcccccCchhHHHHHHHHHHHhCCHHHHHHHHHHhhhcc-CCCCCC
Q 020907           81 YLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK-LPSDLP  159 (320)
Q Consensus        81 l~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~G~aGi~al~~~i~~~~g~~~~~~~~l~~~~~~~-~~~~~~  159 (320)
                      ++|+++++++++++|++.|.++++.+.+... ...+++++|.+|++++++.+++.+++++..+++++.+.+.. ...+.+
T Consensus        82 ~~l~~l~~~t~d~~yl~~a~~~l~~~~~~l~-~~~~~~~~G~aG~l~~l~~ly~~~g~~~~a~~~~~~l~~~~~~~~~~~  160 (411)
T 3e6u_A           82 VLYLHLYDVFGDPAYLQLAHGYVKQSLNCLT-KRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAP  160 (411)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCC-SCCCCTTTSTHHHHHHHHHHHHHTTCHHHHHHHHHHHHGGGGGCTTCC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-ccCCccccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccccCC
Confidence            9999999999999999999999999876533 45789999999988888888999999887777777776653 344567


Q ss_pred             ccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhc----CCCCcceeecCcccCccccchHHHHHHH
Q 020907          160 NELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVL  235 (320)
Q Consensus       160 ~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~----~~~~l~~~w~~~~ylG~aHG~aGIl~~L  235 (320)
                      +|+++|+||++++++++++.++++.+++..+.++++.++++++..+..    ..+|+||.|+++.|+|+|||++||+++|
T Consensus       161 ~dll~G~AG~l~aLl~L~~~~~~~~~~~~~i~~i~~~ii~~g~~~~~~~~~~~~~pl~~~w~~~~~~G~aHG~aGI~~~L  240 (411)
T 3e6u_A          161 NEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYL  240 (411)
T ss_dssp             SSTTTSHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHHHHHTTTTTTCSCCCCBTTBCBCSTTTSHHHHHHHH
T ss_pred             hhhhcCcHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHhccccCCCCcceeecCccCCcccccHHHHHHHH
Confidence            999999999999999999999999998878899999999998876532    2579999999999999999999999999


Q ss_pred             HccCC---CchhHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH----
Q 020907          236 MDMEL---KPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL----  308 (320)
Q Consensus       236 l~~~~---~~~~~~~i~~~l~~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~----  308 (320)
                      +++..   ++++.+.++++++|+++.++++||||+...++.+.+++||||+|||+++++.++++++|++|++.|.+    
T Consensus       241 l~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~  320 (411)
T 3e6u_A          241 MQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADV  320 (411)
T ss_dssp             TCGGGCCCHHHHHHTHHHHHHHHHHTCCTTSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccCccccccCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            98853   23567899999999999888889999987666677999999999999999999999999999999886    


Q ss_pred             --------hhhhccccc
Q 020907          309 --------IYQIYCKGV  317 (320)
Q Consensus       309 --------~~~~~c~~~  317 (320)
                              ..+++|||.
T Consensus       321 ~~~~g~~~~~~~lChG~  337 (411)
T 3e6u_A          321 IWQYGLLKKGYGLCHGS  337 (411)
T ss_dssp             HHHHCSBTTCSCSTTSH
T ss_pred             HHhcCccCCCCceecCh
Confidence                    257888885
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 320
d2g0da1409 a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis 2e-26
d2g0da1409 a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis 9e-05
d2g0da1 409 a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis 3e-04
d2d5ja1 377 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrola 0.002
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

 Score =  105 bits (263), Expect = 2e-26
 Identities = 38/273 (13%), Positives = 72/273 (26%), Gaps = 43/273 (15%)

Query: 68  QDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCA 127
            + TL TG  G   +L +      +    K   + +E   S     G +      +G   
Sbjct: 29  GELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYG-LLTGSLYSGAAG 87

Query: 128 LGAVLAKHAGDERLLDHYLTKFKE--------------IKLPSDLPNELLYGRVGFLWAC 173
           +   +     D+    + L                   ++  +    +++ G  G L   
Sbjct: 88  IALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYL 147

Query: 174 SFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRC--------PLMYEWHGKKYWGAA 225
             +N     D          +  + K    L +                   G    G A
Sbjct: 148 LLINDEQYDDLKILII--NFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLA 205

Query: 226 HGLAGIMHVLMDMELKPDEV----EDVKGTLRYMIKNRF--------------PSGNYPS 267
           HGLAG+  +L    +K          ++  +    K                        
Sbjct: 206 HGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEK 265

Query: 268 SEGSESDRLVHWCHGAPGVTLTLAKAAEVILDE 300
                S     WC+G PG++L        + ++
Sbjct: 266 VIREASFIRDAWCYGGPGISLLYLYGGLALDND 298
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409 Back     information, alignment and structure
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409 Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Length = 377 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 99.96
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 99.74
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 97.83
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 97.72
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 95.81
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 94.39
d1r76a_ 408 Polygalacturonic acid lyase (pectate lyase) {Azosp 82.96
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

Probab=99.96  E-value=2.2e-30  Score=245.14  Aligned_cols=246  Identities=17%  Similarity=0.108  Sum_probs=162.3

Q ss_pred             CCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhc--CCCCCcccccCchhHHHHHHHHHHHhCCH-HHHH
Q 020907           67 VQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSAS--RDSGRVTFICGRAGVCALGAVLAKHAGDE-RLLD  143 (320)
Q Consensus        67 ~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~--~~~~~~~~~~G~aGi~al~~~i~~~~g~~-~~~~  143 (320)
                      ..+.|||+|.+||++||.++++.+++++|.+.|.+.++.+.+..  .+..+.|+++|.+|+......+.+..++. ..++
T Consensus        28 ~~~~sLy~G~~GiaL~l~~l~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~glf~G~~Gi~~~l~~~~~~~~~~~~~~~  107 (409)
T d2g0da1          28 FGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGSLYSGAAGIALSILHLREDDEKYKNLLD  107 (409)
T ss_dssp             GGGGSTTTSHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTSHHHHHHHHGGGTTTCHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCCcceeCCHHHHHHHHHHHHhcchhhhHHHH
Confidence            44679999999999999999999999999999999999876532  23456899999999643323323211110 1111


Q ss_pred             HHHHHh----hh----cc--CCCCCCccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHH---hhhcC--
Q 020907          144 HYLTKF----KE----IK--LPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRR---LANRG--  208 (320)
Q Consensus       144 ~~l~~~----~~----~~--~~~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~---~~~~~--  208 (320)
                      ...+.+    .+    ..  ..+...+|+++|.||++++++.+++...+     +....+.+.+.+....   .....  
T Consensus       108 ~l~~~l~~~~~~~i~~~~~~~~~~~~~D~l~G~aG~~~~LL~~~~~~~~-----~~~~~i~~~l~~~~~~~~~~~~~~~~  182 (409)
T d2g0da1         108 SLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQYD-----DLKILIINFLSNLTKENNGLISLYIK  182 (409)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGCCHHHHSSSSSHHHHHHHHTTCCCGGGH-----HHHHHHHHHHHHTTSCCSSSCTTCBC
T ss_pred             HHHHHHHHHHHHHHHHhhccccCCcccchhcccHHHHHHHHHhcccccc-----HHHHHHHHHHHHHHHhcccccccccc
Confidence            111111    11    11  11223579999999999999877665433     2334444444332211   10000  


Q ss_pred             --CCCc----ceeecCcccCccccchHHHHHHHHccC----CCchhHHHHHHHHHHHHHccCC---CCCCCCCCC-----
Q 020907          209 --RCPL----MYEWHGKKYWGAAHGLAGIMHVLMDME----LKPDEVEDVKGTLRYMIKNRFP---SGNYPSSEG-----  270 (320)
Q Consensus       209 --~~~l----~~~w~~~~ylG~aHG~aGIl~~Ll~~~----~~~~~~~~i~~~l~~l~~~~~~---~gnwp~~~~-----  270 (320)
                        ..+.    ...+++..++|+|||.|||+++|+.+.    ..+...+.++++++++.+.++.   ..+||+.+.     
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~  262 (409)
T d2g0da1         183 SENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELK  262 (409)
T ss_dssp             GGGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHH
T ss_pred             cccccccchhcccCCCCCccchhhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHhhhccccCCCCCcCcccccc
Confidence              0000    001124457999999999999998764    2445678889999988765542   345987542     


Q ss_pred             ------CCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH------------hhhhccccc
Q 020907          271 ------SESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL------------IYQIYCKGV  317 (320)
Q Consensus       271 ------~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~------------~~~~~c~~~  317 (320)
                            .....+++||||+|||+++++.++++++|+++++.+.+            ..++.|||.
T Consensus       263 ~~~~~~~~~~~~~~WChG~~Gi~la~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~LCHG~  327 (409)
T d2g0da1         263 KEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDSYMICHGY  327 (409)
T ss_dssp             HTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCTTCCSCCTTTSH
T ss_pred             cccccccCcccccccCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCcccCcH
Confidence                  12234789999999999999999999999999988886            357899995
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure