Citrus Sinensis ID: 020921

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Secondary Structure (PSIPRED)
ccccccccccccHHHHccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEcccccccccccccEEEEcccccccccccccccHHcccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHccccccccEEEEEEEEEEEccccccccccccccEEEEEEEEEccEEEEEEcccccccHHHHHHHHHHccccccccccccccccccHHHHccccHHHHHHHccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccHHHHHcccHHHcccccccccHcccccccccccccccccccHHHEHHHHHHcHHHEcccccHHHHHHcccccccEcccccEEEEcccEcccccccEEEEEccccccccccccccHHHHHHHHHHHEEccccEEEEEEEcccccccccccccccccHHHHHHHHHccHHHcccccccHHHHHHHHHHHHcccccccEEEEEEEEEccccccccccccEEEEEEEEEEcccEEEEEEcccccHHHHHHHHHccEEEEEEEccccEEccccccHEEEHcccHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvllspslslprlhfirnhrgsivqgqkncrlnnkaivcscasskpiqqngfcrrDLVLFGlssslslgfptpgsvagedvkMASFVDEINAYtylypmelpskKFLFKWVesrkperyssaaplspnarLRIVSERVDIIDNLIIsvtigppnvqflkskdkstwnakdvadsvlsdksalRVTSSQRMAESSvldahtskvdgepywFYEYLIrksptnlgqepnlyrHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVasfhllpptddyvppykdpwrfw
Flexible Loop (DISEMBL)
mvllspslslprlHFIRNHRgsivqgqkncrlNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKperyssaaplspnarlRIVSERVDIIDNLIIsvtigppnvqFLKSKDKSTWNAKdvadsvlsdksalrvtssqrmaessvldahtskvdgEPYWFYEYLIRKsptnlgqepnLYRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLpptddyvppykDPWRFW
Low Complexity Region (SEG)
MVllspslslprlHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVlfglssslslgfPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Disordered region (IsUnstruct)
*********LPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVE****************ARLRIVSERVDIIDNLIISVTIGPPNVQFLK*******************************************VDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLPPTDDYVPPYKDPW***
Disordered Region (DISOPRED)
*******************************************************DLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVES*****************LRIVSERVDIIDNLIISVTIGP***************AKDVADSVLSDKS*****************AHTSKVDGEPYWFYEYLIRKS********NLYRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNN**********YVMMQMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Disordered Region (DISEMBL)
MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVE************LSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSAL****************HTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Disordered Region (DISPRO)
*VLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
P82715	297	PsbP domain-containing pr	yes	no	0.896	0.966	0.566	9e-99

>sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana GN=PPD5 PE=1 SV=3

 Score =  360 bits (923), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 187/330 (56%), Positives = 227/330 (68%), Gaps = 43/330 (13%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL PSL  P     R  R S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 1   MALLCPSLPSPNSRLFRC-RSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 59

Query: 60  FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P    V         +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 60  IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 119

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 120 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 178

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR 230
           VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DGEPYW+YEYL+RKSPT + +   LYR
Sbjct: 179 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYR 238

Query: 231 HYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMG 290
           HY++STAER+GYLY+I+ASTLGKQWD                               +MG
Sbjct: 239 HYISSTAERDGYLYTINASTLGKQWD-------------------------------KMG 267

Query: 291 PFLEKSVASFHLLPPTDDYVPPYKDPWRFW 320
           P LE++V SF LLPPTD YVPPYKDPWRFW
Sbjct: 268 PVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
224092386	295	predicted protein [Populus trichocarpa]	0.896	0.972	0.668	1e-117
225430097	284	PREDICTED: psbP domain-containing protei	0.868	0.978	0.661	1e-112
449441968	296	PREDICTED: psbP domain-containing protei	0.896	0.969	0.633	1e-109
449499583	296	PREDICTED: psbP domain-containing protei	0.896	0.969	0.630	1e-109
255551118	251	conserved hypothetical protein [Ricinus	0.706	0.900	0.775	2e-98
7573402	319	putative protein [Arabidopsis thaliana]	0.909	0.912	0.572	3e-98
22326731	297	PsbP domain-containing protein 5 [Arabid	0.896	0.966	0.566	5e-97
297807183	297	hypothetical protein ARALYDRAFT_487981 [	0.896	0.966	0.569	9e-96
147790304	268	hypothetical protein VITISV_026424 [Viti	0.687	0.820	0.693	3e-95
356515500	295	PREDICTED: psbP domain-containing protei	0.896	0.972	0.564	4e-95

>gi|224092386|ref|XP_002309586.1| predicted protein [Populus trichocarpa] gi|222855562|gb|EEE93109.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/323 (66%), Positives = 248/323 (76%), Gaps = 36/323 (11%)

Query: 2   VLLSPSLSLPRLH--FIRNHRGSIVQGQKNCRLNNKAIVCSCA--SSKPIQQNGFCRRDL 57
           +L SPS      H  F RN +  I+  QK C+L  K + CSCA  SS P  QNGFCRRDL
Sbjct: 5   LLCSPSHFTTHHHNPFFRN-QSRILLSQKKCKLKEKIMACSCACSSSDPSLQNGFCRRDL 63

Query: 58  VLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPE 117
           VLFGLSSSLS+ FP+   +A ED+KMAS VDEINAYTY YP ELPSKKFLFKWVESRKPE
Sbjct: 64  VLFGLSSSLSIAFPSSEILAEEDLKMASVVDEINAYTYSYPAELPSKKFLFKWVESRKPE 123

Query: 118 RYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLS 177
           RYSSAAPLS +ARLRIVSERVDIIDNLI+SV+IGPPN+QF+KSKDK+TW AKDVADSVLS
Sbjct: 124 RYSSAAPLSSDARLRIVSERVDIIDNLILSVSIGPPNLQFVKSKDKNTWAAKDVADSVLS 183

Query: 178 DKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTA 237
           DKS+LRVTS+QR++ESS+LDAH +++DGEPYWFYEY++RKSPT   QE NL+R Y+ASTA
Sbjct: 184 DKSSLRVTSTQRLSESSILDAHANEIDGEPYWFYEYIVRKSPTKNAQESNLFRRYIASTA 243

Query: 238 EREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSV 297
           ER+GYLYS+SASTL KQWD                               +MGP+LEK+V
Sbjct: 244 ERDGYLYSLSASTLSKQWD-------------------------------KMGPYLEKTV 272

Query: 298 ASFHLLPPTDDYVPPYKDPWRFW 320
           ASF LLPPT DYVPPYKDPWRFW
Sbjct: 273 ASFRLLPPTGDYVPPYKDPWRFW 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430097|ref|XP_002284586.1| PREDICTED: psbP domain-containing protein 5, chloroplastic [Vitis vinifera] gi|296081930|emb|CBI20935.3| unnamed protein product [Vitis vinifera]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/310 (66%), Positives = 231/310 (74%), Gaps = 32/310 (10%)

Query: 11  PRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGF 70
           P L   RNH  ++V  QK C L  K I CSC  S+P  + GF RRDL+LFG SSS +L F
Sbjct: 7   PNLLIFRNHTRTMVN-QKKCGLPEKIISCSCVPSRPNSKIGFYRRDLILFGFSSSAALIF 65

Query: 71  PTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNAR 130
           P  G    E+ KMAS VD+INAY+YLYP+ELPSKK +FKWVESRKPERYSSAAPLSP+AR
Sbjct: 66  PPSGYGTEEEFKMASVVDDINAYSYLYPLELPSKKLVFKWVESRKPERYSSAAPLSPDAR 125

Query: 131 LRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRM 190
           LRIVSERVDIIDNLIISVTIGPPN QFLKSKDK TW AKDVADSVL+DK+ALR+TSSQRM
Sbjct: 126 LRIVSERVDIIDNLIISVTIGPPNSQFLKSKDKGTWTAKDVADSVLADKAALRITSSQRM 185

Query: 191 AESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAST 250
           +ESSVLD H S+VDGEPYW+YEYLIRKSPT   QE N+YRHYVASTAER+GYLYS++ ST
Sbjct: 186 SESSVLDTHASEVDGEPYWYYEYLIRKSPTKSAQESNIYRHYVASTAERDGYLYSLNVST 245

Query: 251 LGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLPPTDDYV 310
           + KQW                                 MGP LEK+ +SF LLPPT+DYV
Sbjct: 246 ISKQWK-------------------------------VMGPLLEKAASSFRLLPPTEDYV 274

Query: 311 PPYKDPWRFW 320
           PPYKDPWRFW
Sbjct: 275 PPYKDPWRFW 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441968|ref|XP_004138754.1| PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Cucumis sativus]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/319 (63%), Positives = 239/319 (74%), Gaps = 32/319 (10%)

Query: 2   VLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFG 61
           V  S ++SLP L F RN   ++   +K   +  K  VCS + SKP  +NG  RRDL+LFG
Sbjct: 10  VSTSTNVSLPNLPFFRNQPKNL-PCRKRIGMYKKFNVCSTSISKPTSENGLSRRDLLLFG 68

Query: 62  LSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSS 121
           L+SS++L FP+ GS+A E++K A+ VDEINAY+Y YP+EL S  F FKWVESRKPERYSS
Sbjct: 69  LTSSVALSFPSLGSLAEEELKAATMVDEINAYSYTYPLELSSTNFAFKWVESRKPERYSS 128

Query: 122 AAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSA 181
           AAPLSP+ARLRIVSERVD IDNLIISVTIGPPN  F+KSKDKSTW AKDVADSVLSDKSA
Sbjct: 129 AAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIFIKSKDKSTWAAKDVADSVLSDKSA 188

Query: 182 LRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREG 241
           LRVTSSQRMAESSVLD ++S +DGEPYW++EYL+RKSPT +  E N+YRHYVASTAER+G
Sbjct: 189 LRVTSSQRMAESSVLDTNSSNIDGEPYWYFEYLVRKSPTKIVGESNIYRHYVASTAERDG 248

Query: 242 YLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFH 301
           +LY+I+ASTLG QW+                                MGPFL+K+V SF 
Sbjct: 249 FLYTINASTLGAQWN-------------------------------TMGPFLQKTVESFR 277

Query: 302 LLPPTDDYVPPYKDPWRFW 320
           LLPPT+DYVPPYKDPWRFW
Sbjct: 278 LLPPTEDYVPPYKDPWRFW 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499583|ref|XP_004160856.1| PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Cucumis sativus]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/319 (63%), Positives = 238/319 (74%), Gaps = 32/319 (10%)

Query: 2   VLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFG 61
           V  S ++SLP L F R    ++   +K   +  K  VCS + SKP  +NG  RRDL+LFG
Sbjct: 10  VSTSTNVSLPNLPFFRTQPKNL-PCRKRIGMYKKFNVCSTSISKPTSENGLSRRDLLLFG 68

Query: 62  LSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSS 121
           L+SS++L FP+ GS+A E++K A+ VDEINAY+Y YP+EL S  F FKWVESRKPERYSS
Sbjct: 69  LTSSVALSFPSLGSLAEEELKAATMVDEINAYSYTYPLELSSTNFAFKWVESRKPERYSS 128

Query: 122 AAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSA 181
           AAPLSP+ARLRIVSERVD IDNLIISVTIGPPN  F+KSKDKSTW AKDVADSVLSDKSA
Sbjct: 129 AAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIFIKSKDKSTWAAKDVADSVLSDKSA 188

Query: 182 LRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREG 241
           LRVTSSQRMAESSVLD ++S +DGEPYW++EYL+RKSPT +  E N+YRHYVASTAER+G
Sbjct: 189 LRVTSSQRMAESSVLDTNSSNIDGEPYWYFEYLVRKSPTKIVGESNIYRHYVASTAERDG 248

Query: 242 YLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFH 301
           +LY+I+ASTLG QW+                                MGPFL+K+V SF 
Sbjct: 249 FLYTINASTLGAQWN-------------------------------TMGPFLQKTVESFR 277

Query: 302 LLPPTDDYVPPYKDPWRFW 320
           LLPPT+DYVPPYKDPWRFW
Sbjct: 278 LLPPTEDYVPPYKDPWRFW 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551118|ref|XP_002516607.1| conserved hypothetical protein [Ricinus communis] gi|223544427|gb|EEF45948.1| conserved hypothetical protein [Ricinus communis]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 176/227 (77%), Positives = 199/227 (87%), Gaps = 1/227 (0%)

Query: 15  FIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLSSSLSLGFPTPG 74
           F+R ++  I+  QK C+L  K +VCSC SSKP   NGF RRD VLFGLSSS+S  FPT G
Sbjct: 19  FLRINQSRILLNQKRCKLKEKIMVCSC-SSKPTSFNGFLRRDFVLFGLSSSMSFVFPTSG 77

Query: 75  SVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIV 134
           S+A ED+KM   VDEINAYTYLYP+++PS KFLFKWVESRKPERYSSAAPLSP+ARLRIV
Sbjct: 78  SLAEEDLKMEPLVDEINAYTYLYPVKVPSTKFLFKWVESRKPERYSSAAPLSPDARLRIV 137

Query: 135 SERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESS 194
           SERVDIIDNLIISVTIGPPNVQF+KSKDKSTW AKDVADSVLSDKSALRVTSSQR+AESS
Sbjct: 138 SERVDIIDNLIISVTIGPPNVQFIKSKDKSTWVAKDVADSVLSDKSALRVTSSQRLAESS 197

Query: 195 VLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREG 241
           VLD HTS++DGEPYW+YEYL+RKSP N+ +E NL+RHYVASTAER+G
Sbjct: 198 VLDTHTSEIDGEPYWYYEYLVRKSPINIAEESNLFRHYVASTAERDG 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7573402|emb|CAB87705.1| putative protein [Arabidopsis thaliana]

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 189/330 (57%), Positives = 231/330 (70%), Gaps = 39/330 (11%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL PSL  P     R+   S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 19  MALLCPSLPSPNSRLFRS---SNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 75

Query: 60  FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P    V         +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 76  IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 135

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 136 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 194

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR 230
           VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DGEPYW+YEYL+RKSPT + +   LYR
Sbjct: 195 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYR 254

Query: 231 HYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMG 290
           HY++STAER+GYLY+I+ASTLGKQWD+  L+                         MQMG
Sbjct: 255 HYISSTAERDGYLYTINASTLGKQWDK-GLY------------------------KMQMG 289

Query: 291 PFLEKSVASFHLLPPTDDYVPPYKDPWRFW 320
           P LE++V SF LLPPTD YVPPYKDPWRFW
Sbjct: 290 PVLERAVGSFRLLPPTDSYVPPYKDPWRFW 319

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326731|ref|NP_196706.2| PsbP domain-containing protein 5 [Arabidopsis thaliana] gi|190358920|sp|P82715.3|PPD5_ARATH RecName: Full=PsbP domain-containing protein 5, chloroplastic; AltName: Full=OEC23-like protein 6; AltName: Full=PsbP-related thylakoid lumenal protein 4; AltName: Full=Thylakoid lumenal 35.8 kDa protein; Flags: Precursor gi|18252955|gb|AAL62404.1| putative protein [Arabidopsis thaliana] gi|21389651|gb|AAM48024.1| putative protein [Arabidopsis thaliana] gi|332004298|gb|AED91681.1| PsbP domain-containing protein 5 [Arabidopsis thaliana]

 Score =  360 bits (923), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 187/330 (56%), Positives = 227/330 (68%), Gaps = 43/330 (13%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL PSL  P     R  R S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 1   MALLCPSLPSPNSRLFRC-RSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 59

Query: 60  FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P    V         +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 60  IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 119

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 120 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 178

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR 230
           VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DGEPYW+YEYL+RKSPT + +   LYR
Sbjct: 179 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYR 238

Query: 231 HYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMG 290
           HY++STAER+GYLY+I+ASTLGKQWD                               +MG
Sbjct: 239 HYISSTAERDGYLYTINASTLGKQWD-------------------------------KMG 267

Query: 291 PFLEKSVASFHLLPPTDDYVPPYKDPWRFW 320
           P LE++V SF LLPPTD YVPPYKDPWRFW
Sbjct: 268 PVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807183|ref|XP_002871475.1| hypothetical protein ARALYDRAFT_487981 [Arabidopsis lyrata subsp. lyrata] gi|297317312|gb|EFH47734.1| hypothetical protein ARALYDRAFT_487981 [Arabidopsis lyrata subsp. lyrata]

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 188/330 (56%), Positives = 227/330 (68%), Gaps = 43/330 (13%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL P L  P     R  R S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 1   MALLCPPLPSPNSRLFRC-RNSNISSKYHGESKELVIARSGVSTRSISSEKGLSRRDLVL 59

Query: 60  FGLSSSLSLGFP--TPGSVAGEDVK-------MASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P  +P + A ED+K       M + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 60  IGLSSPLSMLLPLSSPVTHAEEDLKLGTEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 119

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+IDNL+ISV+IGPPN + L SK+K TW AK+
Sbjct: 120 VESRKPERYSSAAPLSPDARLRIVSERVDLIDNLVISVSIGPPNSR-LTSKEKKTWAAKE 178

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR 230
           VADSVLSDKSALRVTSSQR+ ESSVLDAH + +DGEPYW+YEYL+RKSPT + +   LYR
Sbjct: 179 VADSVLSDKSALRVTSSQRLEESSVLDAHATDIDGEPYWYYEYLVRKSPTKIAEASKLYR 238

Query: 231 HYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMG 290
           HY++STAER+GYLY+I+ASTLGKQWD                               +MG
Sbjct: 239 HYISSTAERDGYLYTINASTLGKQWD-------------------------------KMG 267

Query: 291 PFLEKSVASFHLLPPTDDYVPPYKDPWRFW 320
           P LE++V SF LLPPTD YVPPYKDPWRFW
Sbjct: 268 PVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790304|emb|CAN63319.1| hypothetical protein VITISV_026424 [Vitis vinifera]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/251 (69%), Positives = 195/251 (77%), Gaps = 31/251 (12%)

Query: 70  FPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNA 129
           F + G    E+ KMAS VD+INAY+YLYP+ELPSKK +FKWVESRKPERYSSAAPLSP+A
Sbjct: 49  FSSSGYGTEEEFKMASVVDDINAYSYLYPLELPSKKLVFKWVESRKPERYSSAAPLSPDA 108

Query: 130 RLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQR 189
           RLRIVSERVDIIDNLIISVTIGPPN QFLKSKDK TW AKDVADSVL+DK+ALR+TSSQR
Sbjct: 109 RLRIVSERVDIIDNLIISVTIGPPNSQFLKSKDKGTWTAKDVADSVLADKAALRITSSQR 168

Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
           M+ESSVLD H S+VDGEPYW+YEYLIRKSPT   QE N+YRHYVASTAER+GYLYS++ S
Sbjct: 169 MSESSVLDTHASEVDGEPYWYYEYLIRKSPTKSAQESNIYRHYVASTAERDGYLYSLNVS 228

Query: 250 TLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLPPTDDY 309
           T+ KQW                                 MGP LEK+ +SF LLPPT+DY
Sbjct: 229 TISKQWK-------------------------------VMGPLLEKAASSFRLLPPTEDY 257

Query: 310 VPPYKDPWRFW 320
           VPPYKDPWRFW
Sbjct: 258 VPPYKDPWRFW 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515500|ref|XP_003526438.1| PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Glycine max]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 185/328 (56%), Positives = 228/328 (69%), Gaps = 41/328 (12%)

Query: 1   MVLLSPSLSL--------PRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGF 52
           MV  S SLSL        P     RN+  +I+  Q  C  + +    SC + KP  QN  
Sbjct: 1   MVFPSSSLSLFFPIPTLLPNNLIFRNNTRAIL-NQHKCPFSEERPRFSCCALKPTSQNRI 59

Query: 53  CRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVE 112
            RRDL+L GL+S LS   P   ++A E+ KMASF+DEINAY+Y+YP+ELPS  F FKW+E
Sbjct: 60  FRRDLMLLGLTS-LSPTMPLSVTLAEEEPKMASFLDEINAYSYMYPVELPSDNFTFKWIE 118

Query: 113 SRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVA 172
           SRKPERYSSAAPLSP+ARLRIVSER+D IDN+IISVTIGPPN  ++KSKDKS W AKDVA
Sbjct: 119 SRKPERYSSAAPLSPDARLRIVSERLDFIDNVIISVTIGPPNSSYIKSKDKSKWTAKDVA 178

Query: 173 DSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHY 232
           DSVL+D+S+LRVTSSQR+ ESSVL+ H+S++DGE YW+YEYL+RK+P  L  E + YRHY
Sbjct: 179 DSVLADRSSLRVTSSQRLEESSVLNTHSSEIDGEMYWYYEYLVRKAPLRLTDESSTYRHY 238

Query: 233 VASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPF 292
           +ASTAER+GYLYSISAST+   W+                               ++GPF
Sbjct: 239 LASTAERDGYLYSISASTVSPLWE-------------------------------KLGPF 267

Query: 293 LEKSVASFHLLPPTDDYVPPYKDPWRFW 320
           L+K+V SF LL PT++YVPPYKDPWRFW
Sbjct: 268 LDKAVNSFRLLSPTENYVPPYKDPWRFW 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
TAIR|locus:2144236	297	PPD5 "PsbP domain protein 5" [	0.690	0.744	0.620	5.9e-73

TAIR|locus:2144236 PPD5 "PsbP domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 144/232 (62%), Positives = 179/232 (77%)

Query:    37 IVCSCASSKPIQ-QNGFCRRDLVXXXXXXXXXXXXPTPGSV---------AGEDVKMASF 86
             I  S  S++ I  + G  RRDLV            P    V         +GE++KM + 
Sbjct:    36 IARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTM 95

Query:    87 VDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLII 146
             VD+INAY+Y YP++ PS+K +FKWVESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+I
Sbjct:    96 VDDINAYSYAYPLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVI 155

Query:   147 SVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGE 206
             S++IGPPN + L SK+K TW+AK+VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DGE
Sbjct:   156 SISIGPPNSR-LTSKEKKTWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGE 214

Query:   207 PYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEV 258
             PYW+YEYL+RKSPT + +   LYRHY++STAER+GYLY+I+ASTLGKQWD++
Sbjct:   215 PYWYYEYLVRKSPTKIAEASKLYRHYISSTAERDGYLYTINASTLGKQWDKM 266

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82715	PPD5_ARATH	No assigned EC number	0.5666	0.8968	0.9663	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0013033101	hypothetical protein (295 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_VI000277	SubName- Full=Putative uncharacterized protein; (257 aa)				•			•		0.499
	gw1.V.2242.1	hypothetical protein (193 aa)				•			•		0.452
	gw1.II.1652.1	photosystem II thylakoid lumenal 29.8 kDa protein PsbP (224 aa)				•			•		0.451

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
pfam01789	163	pfam01789, PsbP, PsbP	2e-08

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 48/199 (24%)

Query: 70  FPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNA 129
                + AG      ++VD  + Y +LYP           W              +S   
Sbjct: 1   ACKAKTNAG----FQAYVDTDDGYEFLYP---------TGWWREV----------VSDGP 37

Query: 130 RLRIVSERVDIIDNL-IISVTIGPPNVQFLKSKDKSTWN---AKDVADSVLSDKSALRVT 185
            +       D+I++   +SV I P        K KS  +    ++V + +L       + 
Sbjct: 38  DVVFH----DLIESDENVSVVISPV------DKKKSLEDLGSPEEVGERLLRGV----LA 83

Query: 186 SSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYS 245
                 E+ +L+A   +VDG+ Y+  EYL+R             RH +A+     G LY+
Sbjct: 84  PEGSGREAELLEASEREVDGKTYYDLEYLVR-LADGGD------RHELATVTVDRGKLYT 136

Query: 246 ISASTLGKQWDEVSLFLST 264
           ++A T  K+W +V      
Sbjct: 137 LAAQTNEKRWFKVKKLFER 155

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.97
PLN03152	241	hypothetical protein; Provisional	99.94
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	96.07

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=3.4e-51  Score=382.65  Aligned_cols=232  Identities=19%  Similarity=0.262  Sum_probs=200.1

Q ss_pred             CcccccccCCCcccccccccCCCCceeeeecCCCCCccCCchhhHHHHHHH--HhhhhccCCCCCCccccccCccceecC
Q 020921           12 RLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGL--SSSLSLGFPTPGSVAGEDVKMASFVDE   89 (320)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rRr~~l~gl--~~~~a~~~p~~~a~ae~a~~f~~~~D~   89 (320)
                      +..|.||+++|+.++.+|++.+..++.+.|.. ..+..+.+.||.+|+.++  +..++.....+.|+|+. ++|+.|+|+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~~-~~l~~y~D~  115 (286)
T PLN00059         38 HLLFSRPISSGPKHQSAKSAKPDSPVAINCLT-DAKQVCAVGRRKSMMMGLLMSGLIVSEANLPTAFASI-PVFREYIDT  115 (286)
T ss_pred             hhhccccccCCcccccccccCCCCCeeeeccc-chhhhhhhhhhhhhHHHHHHHHHHHHhhcCchhhcCC-cccceeEcC
Confidence            46789999999999999999999999999983 556778888888877666  33344444455777653 469999999


Q ss_pred             CCceEEeccCCCCCccccccccccccccccCCCCCCCCCcceEEe--e--cccccccceeeEEEeCCChhhhhccccccc
Q 020921           90 INAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIV--S--ERVDIIDNLIISVTIGPPNVQFLKSKDKST  165 (320)
Q Consensus        90 ~dGYsFlYP~~W~s~ev~~~G~d~rf~D~~~s~~pLs~n~rvrIV--s--e~~si~dnl~VsVslGpP~~~Fl~~~d~~~  165 (320)
                      .|||+|+||.||+  +|...|+|++|||+|+..    +|++|.|.  +  +.++|.|       ||+|+++         
T Consensus       116 ~DGY~FlYP~GWi--~V~~~G~DVvFrD~Ie~~----ENVSV~ISs~sss~~~sLeD-------LGsP~eV---------  173 (286)
T PLN00059        116 FDGYSFKYPQNWI--QVRGAGADIFFRDPVVLD----ENLSVEFSSPSSSKYTSLED-------LGSPEEV---------  173 (286)
T ss_pred             CCCeEEeCCCCCe--EeccCCCceEEeccCccc----cceEEEEecCCcccCCChHH-------cCCHHHH---------
Confidence            9999999999999  766799999999999955    56668886  3  6899999       9999999         


Q ss_pred             ccHHHHHhhhcccccccccccccccccccEEeeeecee-CCeeeEEEEEEEecC---------CCCCCCCCCCcceEEEE
Q 020921          166 WNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKV-DGEPYWFYEYLIRKS---------PTNLGQEPNLYRHYVAS  235 (320)
Q Consensus       166 w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~-dGk~YY~lEy~vr~s---------p~~~a~~~e~~RH~Lav  235 (320)
                        ||+|.+++|+++++.|...|+   +++||+|.+|+. ||++||+|||.|+..         ++++.+.++|.||+||+
T Consensus       174 --gerLlkqvLa~f~str~GsgR---eaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~  248 (286)
T PLN00059        174 --GKRVLRQYLTEFMSTRLGVKR---EANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAV  248 (286)
T ss_pred             --HHHHHHHHhcccccccCCCCc---ceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEE
Confidence              999999999998765543222   899999999977 999999999999764         56777889999999999


Q ss_pred             EEEECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeeee
Q 020921          236 TAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLL  303 (320)
Q Consensus       236 ~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~  303 (320)
                      ++|+|||||||++|+||+||.                               ||++.|+++++||+|.
T Consensus       249 v~V~nGkLYTL~~qtpE~RW~-------------------------------kvk~~f~~V~dSF~V~  285 (286)
T PLN00059        249 LGVENDRLYSIRLQTPEKVFL-------------------------------EEEKDLRRVMDSFRVE  285 (286)
T ss_pred             EEEeCCEEEEEEcCCcHHHHH-------------------------------HHHHHHHHHHhheeec
Confidence            999999999999999999999                               9999999999999985

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=5.1e-49  Score=367.28  Aligned_cols=210  Identities=19%  Similarity=0.306  Sum_probs=170.6

Q ss_pred             CCceeeeecCCCCCccCCchhhHHHHHHHH--hhhhccCCCCCCccccccCccceec-------CCCceEEeccCCC-CC
Q 020921           34 NKAIVCSCASSKPIQQNGFCRRDLVLFGLS--SSLSLGFPTPGSVAGEDVKMASFVD-------EINAYTYLYPMEL-PS  103 (320)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~rRr~~l~gl~--~~~a~~~p~~~a~ae~a~~f~~~~D-------~~dGYsFlYP~~W-~s  103 (320)
                      +..++|+.+..   +...+.||++|+.+++  +.++.+.|+++||||++|+|++...       ++|||+|+||++| ++
T Consensus        35 ~~~~~~~~~~~---~~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~~dgY~FlyP~~W~~~  111 (260)
T PLN00042         35 PSQVVCRAQEE---DNSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPS  111 (260)
T ss_pred             Ccceeeecccc---ccccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEeeCCCeEEecCCCCccc
Confidence            34577887532   2233445555443333  3448999999999999999887433       6799999999999 56


Q ss_pred             ccccccccccccccccCCCCCCCCCcceEEe-ecccccccceeeEEEeCCChhhhhcccccccccHHHHHhhhcccc---
Q 020921          104 KKFLFKWVESRKPERYSSAAPLSPNARLRIV-SERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDK---  179 (320)
Q Consensus       104 ~ev~~~G~d~rf~D~~~s~~pLs~n~rvrIV-se~~si~dnl~VsVslGpP~~~Fl~~~d~~~w~g~~vak~vLa~~---  179 (320)
                      +++.|+|+|++|+|+|+..    +|++|+|. +++++|+|       ||+|++. ++++      ++.|++++++++   
T Consensus       112 ke~~~~G~dv~f~D~~~~~----eNVSV~Ispt~k~sI~d-------lGsPee~-l~~v------gylL~kq~~a~~t~s  173 (260)
T PLN00042        112 KEREFPGQVLRFEDNFDAT----SNLSVMVTPTDKKSITD-------YGSPEEF-LSKV------SYLLGKQAYSGETAS  173 (260)
T ss_pred             cccccCCceEEeecccccc----ccEEEEEecCCcCCHhh-------cCCHHHH-HHHH------HHHHHhhhccCcccc
Confidence            6788899999999999966    55568886 78899999       9999962 2222      678999999987   


Q ss_pred             cccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECCEEEEEEcccCcccchhhh
Q 020921          180 SALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVS  259 (320)
Q Consensus       180 ~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~aV~~GkLYTL~aqtpEkRW~~~~  259 (320)
                      +.|| . ++.+++++||++++|++||++||+|||.+|.+     ++++++||+|++++|+|||||||++|+||+||+   
T Consensus       174 ~~Gf-~-p~~vata~Lleas~re~dGk~YY~lE~~~~~a-----d~d~~~RH~LatatV~~GkLYtl~aqa~EkRW~---  243 (260)
T PLN00042        174 EGGF-D-ANAVATAAVLESSTQEVGGKPYYYLSVLTRTA-----DGDEGGKHQLITATVSDGKLYICKAQAGDKRWF---  243 (260)
T ss_pred             ccCc-C-cccccceeEEEeeeEEeCCeEEEEEEEEEecC-----CCCCCCceEEEEEEEECCEEEEEEecCchhhhh---
Confidence            3444 3 56677899999999999999999999999854     788999999999999999999999999999999   


Q ss_pred             hcccccccccccccccccccchhhHHHhhh-hhHHHHhhceeee
Q 020921          260 LFLSTRAHTHKCNNKYLRQTKDHVYVMMQM-GPFLEKSVASFHL  302 (320)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~SF~l  302 (320)
                                                  |+ +.+|+++++||+|
T Consensus       244 ----------------------------K~~~k~l~~v~~SFsV  259 (260)
T PLN00042        244 ----------------------------KGARKFVEGAASSFSV  259 (260)
T ss_pred             ----------------------------HHHHHHHHHHHhceec
Confidence                                        88 6689999999987

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=5.7e-36  Score=279.69  Aligned_cols=141  Identities=16%  Similarity=0.291  Sum_probs=122.4

Q ss_pred             CCCceEEeccCCCCCcccc-------------ccccccccccccCCCCCCCCCcceEEe-----e--cccccccceeeEE
Q 020921           89 EINAYTYLYPMELPSKKFL-------------FKWVESRKPERYSSAAPLSPNARLRIV-----S--ERVDIIDNLIISV  148 (320)
Q Consensus        89 ~~dGYsFlYP~~W~s~ev~-------------~~G~d~rf~D~~~s~~pLs~n~rvrIV-----s--e~~si~dnl~VsV  148 (320)
                      +..||+|+||.+|...+|.             ++|+|++|+|.++      +|++|+|.     +  +.++|+|      
T Consensus       103 ~i~gY~FlyP~gW~~v~Vs~~~sGnycqp~c~~p~~dv~F~D~~d------gnVSVIVSPV~r~t~k~~~sIeD------  170 (263)
T PLN00067        103 NVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDEKQ------GKVQVVASPLIRLTNKPNATIEE------  170 (263)
T ss_pred             CcccceEeCCCCCcCccccccccCccccccccCCCceEEEeCCCC------CCEEEEEecccccccCCCCChHH------
Confidence            6889999999999855553             3469999999665      67778874     2  5589999      


Q ss_pred             EeCCChhhhhcccccccccHHHHHhhhcccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCC
Q 020921          149 TIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNL  228 (320)
Q Consensus       149 slGpP~~~Fl~~~d~~~w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~  228 (320)
                       ||+|+++           ++.|++.+++.  .++        +++||+|++++.||++||+|||.+        +.+++
T Consensus       171 -lGsPeeV-----------l~~Lg~~v~g~--~~~--------~~eLLeAs~re~dGktYY~~E~~t--------p~a~~  220 (263)
T PLN00067        171 -IGSPEKL-----------IASLGPFVTGN--SYD--------PDELLETSVEKIGDQTYYKYVLET--------PFALT  220 (263)
T ss_pred             -ccCHHHH-----------HHHhhHHhhcC--CCC--------CcceEEeeeEeeCCeEEEEEEEEe--------cCCCC
Confidence             9999976           88898888862  222        679999999999999999999999        66779


Q ss_pred             cceEEEEEEEECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeee
Q 020921          229 YRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHL  302 (320)
Q Consensus       229 ~RH~Lav~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l  302 (320)
                      +||+||+++|++|+||||++|++|+||+                               |+++.|+++++||++
T Consensus       221 gRHnLataTV~~GkLYtf~asanEkRW~-------------------------------K~k~~l~~V~dSFsV  263 (263)
T PLN00067        221 GSHNLAKATAKGNTVVLFVVSASDKQWQ-------------------------------SSEKTLKAILDSFQA  263 (263)
T ss_pred             CceEEEEEEEECCEEEEEEecCCHHHHH-------------------------------HHHHHHHHHHHhccC
Confidence            9999999999999999999999999999                               999999999999985

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=1.7e-36  Score=265.63  Aligned_cols=155  Identities=24%  Similarity=0.465  Sum_probs=134.5

Q ss_pred             ccccCccceecCCCceEEeccCCCCCccccccccccccccccCCCCCCCCCcceEEe--ecccccccceeeEEEeCCChh
Q 020921           78 GEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIV--SERVDIIDNLIISVTIGPPNV  155 (320)
Q Consensus        78 e~a~~f~~~~D~~dGYsFlYP~~W~s~ev~~~G~d~rf~D~~~s~~pLs~n~rvrIV--se~~si~dnl~VsVslGpP~~  155 (320)
                      +...+|..|.|+.+||+|+||.+|.  ++...|++++|+|.++..    +|++|.|.  ....+|.|       ||+|++
T Consensus        18 ~~~~~~~~y~d~~~~y~f~~P~gW~--~~~~~G~~v~f~d~~~~~----~nvsV~v~p~~~~~sl~~-------lGs~~~   84 (175)
T PF01789_consen   18 EASTGFQPYTDSDDGYSFLYPSGWE--EVDVSGADVVFRDPIDAD----ENVSVVVSPVPKDFSLED-------LGSPEE   84 (175)
T ss_dssp             T--SSEEEEEECTTTEEEEEETTEE--EEESTTEEEEEEETTETT----SEEEEEEEE-STS-SGGG-------G-SHHH
T ss_pred             cCCCCceEEEcCCCCEEEECCCCCe--ecCCCCeEEEEECccccc----ceEEEEEEecCCcCchhh-------cCCHHH
Confidence            4456799999999999999999996  666699999999999854    56778875  44448999       999998


Q ss_pred             hhhcccccccccHHHHHhhhcccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCC-CCcceEEE
Q 020921          156 QFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEP-NLYRHYVA  234 (320)
Q Consensus       156 ~Fl~~~d~~~w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~-e~~RH~La  234 (320)
                      +           ++.+++..++++++++        .++||++++++.||++||+|||.++        .+ +..||+|+
T Consensus        85 v-----------a~~l~~~~~~~~~~~~--------~a~li~a~~~~~~g~~yY~~Ey~~~--------~~~~~~rh~l~  137 (175)
T PF01789_consen   85 V-----------AERLLNGELASPGSGR--------EAELISASEREVDGKTYYEYEYTVQ--------SPNEGRRHNLA  137 (175)
T ss_dssp             H-----------HHHHHHHCCCHCTSSE--------EEEEEEEEEEEETTEEEEEEEEEEE--------ETTEEEEEEEE
T ss_pred             H-----------HHHHhhhhcccccCCc--------ceEEEEeeeeecCCccEEEEEEEec--------cCCCcccEEEE
Confidence            7           9999999999887765        7999999999999999999999994        34 48999999


Q ss_pred             EEEEECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeeee
Q 020921          235 STAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLL  303 (320)
Q Consensus       235 v~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~  303 (320)
                      +++++|||||||++|++|+||+                               ++++.|+++++||+|+
T Consensus       138 ~~tv~~g~lY~l~~~a~e~~w~-------------------------------k~~~~l~~iv~SF~v~  175 (175)
T PF01789_consen  138 VVTVKNGKLYTLTAQAPESRWD-------------------------------KVEPKLRKIVDSFRVY  175 (175)
T ss_dssp             EEEEETTEEEEEEEEEEHHHHH-------------------------------TCHHHHHHHHHC-EE-
T ss_pred             EEEEECCEEEEEEEEcCHHHHH-------------------------------HHHHHHHHHHhcEEeC
Confidence            9999999999999999999999                               9999999999999984

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.97  E-value=1.2e-31  Score=251.70  Aligned_cols=186  Identities=17%  Similarity=0.291  Sum_probs=136.8

Q ss_pred             eeecCCCCCccCCchhhHHHHHHHHhhh---hccCCCCC--C-cc----------c-cccCccceec-------------
Q 020921           39 CSCASSKPIQQNGFCRRDLVLFGLSSSL---SLGFPTPG--S-VA----------G-EDVKMASFVD-------------   88 (320)
Q Consensus        39 ~~~~~~~~~~~~~~~rRr~~l~gl~~~~---a~~~p~~~--a-~a----------e-~a~~f~~~~D-------------   88 (320)
                      |+|..+.........+||-+|+.+++++   +...|+.+  + +|          + .+.+|+.|.-             
T Consensus        31 ~~~~~~~~~~~~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~  110 (262)
T PLN00066         31 VRIADEETEDVATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWS  110 (262)
T ss_pred             hhhcchhhhhhcchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCcc
Confidence            3344334444555677887776444331   23344332  2 22          1 1234555554             


Q ss_pred             CCCceEEeccCCCCCcccc-----ccccccccccccCCCCCCCCCcceEEe--e-------cccccccceeeEEEeCCCh
Q 020921           89 EINAYTYLYPMELPSKKFL-----FKWVESRKPERYSSAAPLSPNARLRIV--S-------ERVDIIDNLIISVTIGPPN  154 (320)
Q Consensus        89 ~~dGYsFlYP~~W~s~ev~-----~~G~d~rf~D~~~s~~pLs~n~rvrIV--s-------e~~si~dnl~VsVslGpP~  154 (320)
                      +...|+|+||.+|..+.|.     .+|+|.||.+  +..    +|++|.|.  .       ++++|+|       ||+|+
T Consensus       111 ~i~~Y~F~yP~GW~ev~VS~~d~gg~~vd~Rf~~--~~~----~nvsVvVspv~rla~~~~~~~sI~d-------LGspe  177 (262)
T PLN00066        111 EITPYSFKVPQGWEEVPVSIADLGGTEIDLRFAS--DKE----GRLKVVVAPVLRFADNLGDNATIEE-------IGPPE  177 (262)
T ss_pred             ccCCeEEECCCCCeEeecccccCCCCceEEEecc--CCC----ccEEEEEeccccccccccCCCChHH-------cCCHH
Confidence            4578999999999855554     2345666666  443    55667774  2       7889999       99999


Q ss_pred             hhhhcccccccccHHHHHhhhcccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEE
Q 020921          155 VQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVA  234 (320)
Q Consensus       155 ~~Fl~~~d~~~w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~La  234 (320)
                      ++           ++.+++.+++.+.          ++++||+|.+++.||++||+|||  +             ||+|+
T Consensus       178 eV-----------i~~l~~~v~g~~~----------~e~eLl~a~~re~dGktYY~~E~--~-------------rH~La  221 (262)
T PLN00066        178 KV-----------ISGFGPELIGEPV----------EEGKVLSMEVAEHSGRTYYQFEL--P-------------PHTLV  221 (262)
T ss_pred             HH-----------HHHHHHHhcCCCc----------cccceeEeeeeecCCcEEEEEEE--e-------------CceEE
Confidence            87           8888888886443          27899999999999999999999  2             89999


Q ss_pred             EEEEECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeeeeC
Q 020921          235 STAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLP  304 (320)
Q Consensus       235 v~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~~  304 (320)
                      ++||.+||||||++|+||+||+                               +++..|+++++||+++.
T Consensus       222 saTV~~GrLYt~~asape~rW~-------------------------------k~~~~lr~v~dSF~V~~  260 (262)
T PLN00066        222 TATAAGNRVYIFSVTANGLQWK-------------------------------RHYKDLKRIAKSFRVVT  260 (262)
T ss_pred             EEEEECCEEEEEEeecchHhhH-------------------------------HHHHHHHHHhhceeeec
Confidence            9999999999999999999999                               99999999999999964

>PLN03152 hypothetical protein; Provisional

Probab=99.94  E-value=2.2e-26  Score=211.62  Aligned_cols=175  Identities=22%  Similarity=0.295  Sum_probs=121.3

Q ss_pred             hhhHHHHHHHH---hhhhccCCCCCCccccccC----ccc-------eecCCCceEEeccCCCCCccc---cccc-----
Q 020921           53 CRRDLVLFGLS---SSLSLGFPTPGSVAGEDVK----MAS-------FVDEINAYTYLYPMELPSKKF---LFKW-----  110 (320)
Q Consensus        53 ~rRr~~l~gl~---~~~a~~~p~~~a~ae~a~~----f~~-------~~D~~dGYsFlYP~~W~s~ev---~~~G-----  110 (320)
                      .||+.+|-.++   .+++.-.|...+++++.+.    +.-       +.--++||+.-||-.+. +-+   ++..     
T Consensus        32 ~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~g~gf~~~~pp~f~-di~e~~~~~~g~~~y  110 (241)
T PLN03152         32 SRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFYGDGFSIRVPPSFE-DIMEPEDYNAGLSLY  110 (241)
T ss_pred             cccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhhCCceEEeCCCChh-hhcChhhccccccee
Confidence            46777762222   2233444566667665443    222       23368999999999883 111   1211     


Q ss_pred             ----cccccccccCCCCCCCCCcceEEe--e-------cccccccceeeEEEeCCChhhhhcccccccccHHHHHhhhcc
Q 020921          111 ----VESRKPERYSSAAPLSPNARLRIV--S-------ERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLS  177 (320)
Q Consensus       111 ----~d~rf~D~~~s~~pLs~n~rvrIV--s-------e~~si~dnl~VsVslGpP~~~Fl~~~d~~~w~g~~vak~vLa  177 (320)
                          -..-|.-||.|+--. ||++|+|.  .       +.+||.|       ||+|+|+           |     .+|.
T Consensus       111 g~~akp~~~~aRf~s~D~s-EnVSVVIspv~~LK~tfle~kDLtD-------LGsp~EV-----------g-----kv~v  166 (241)
T PLN03152        111 GDKAKPRTFAARFASPDGS-EVLSVVIRPSNQLKITFLEAKDITD-------LGSLKEA-----------A-----KIFV  166 (241)
T ss_pred             cCCCCCcceeeeecCCCCC-ceEEEEEecCccccccccccCChhH-------cCCHHHH-----------H-----HhhC
Confidence                122334456655433 78888885  3       8899999       9999988           5     4455


Q ss_pred             cccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECCEEEEEEcccCcccchh
Q 020921          178 DKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDE  257 (320)
Q Consensus       178 ~~~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~aV~~GkLYTL~aqtpEkRW~~  257 (320)
                      +.++.++       .+.+++. +++.|||+||+|||.+        +    +||+|++++|++||||||++|++|+||+ 
T Consensus       167 P~g~~~~-------saR~iel-~~E~dGKtYY~lEy~v--------~----~RH~LaTVaVsrGKLYTl~aSt~EkRW~-  225 (241)
T PLN03152        167 PGGATLY-------SARTIKV-KEEEGIRTYYFYEFGR--------D----EQHVALVATVNSGKAYIAGATAPESKWD-  225 (241)
T ss_pred             CCccccc-------ccceeee-eeecCCceeEEEEEEe--------C----CcEEEEEEEEcCCeEEEEecCCchhchH-
Confidence            5542111       1233333 4589999999999999        4    8999999999999999999999999999 


Q ss_pred             hhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeeee
Q 020921          258 VSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLL  303 (320)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~  303 (320)
                                                    |++..|+.+++||+||
T Consensus       226 ------------------------------Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        226 ------------------------------DDGVKLRSAAISLTVL  241 (241)
T ss_pred             ------------------------------HHHHHHHHHHhheeeC
Confidence                                          9999999999999986

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=96.07  E-value=0.11  Score=43.37  Aligned_cols=70  Identities=11%  Similarity=0.083  Sum_probs=58.8

Q ss_pred             cccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEEC-CEEEEEEcccCcccchhhhhcccccccccc
Q 020921          192 ESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAERE-GYLYSISASTLGKQWDEVSLFLSTRAHTHK  270 (320)
Q Consensus       192 ~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~aV~~-GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~  270 (320)
                      .-.+++...-+++|.+-+.++|.-        ......-|+..++...+ +++|+|+..++....+              
T Consensus        60 ~~~~~~~~~~~l~~~~a~~l~~~~--------~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~--------------  117 (130)
T PF08786_consen   60 GFQLVERQPITLGGRPARELEYSF--------RSGGQPVYQRQAAVLLPGRRVLVFTYTAPGPFTE--------------  117 (130)
T ss_dssp             T-EEEEEEEEEETTEEEEEEEEEE--------EETTCEEEEEEEEEEEC-CCEEEEEEEEECCCHH--------------
T ss_pred             CcEEEeeEEEEeCCCCeEEEEEEE--------eeCCEEEEEEEEEEEECCCEEEEEEEEcCCCCCH--------------
Confidence            456777666678999999999999        45566788888888888 9999999999999999              


Q ss_pred             cccccccccchhhHHHhhhhhHHHHhhcee
Q 020921          271 CNNKYLRQTKDHVYVMMQMGPFLEKSVASF  300 (320)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF  300 (320)
                                       .-++.++++++||
T Consensus       118 -----------------~~~~~~~~i~~Sf  130 (130)
T PF08786_consen  118 -----------------EQRAHWEAILKSF  130 (130)
T ss_dssp             -----------------HHHHHHHHHHCT-
T ss_pred             -----------------HHHHHHHHHHhcC
Confidence                             8889999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	2e-19
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	4e-19
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	9e-18
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	4e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 83.4 bits (205), Expect = 2e-19
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 30/174 (17%)

Query: 91  NAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTI 150
           + +    P          KW  +++ E         P   LR   +  D   N+   V I
Sbjct: 15  DGFKLQIP---------SKWNPNKEVE--------YPGQVLRF-EDNFDATSNV--IVAI 54

Query: 151 GPPNVQFLKSKDKSTWNAKDV-----ADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDG 205
            P + + +            V       +      +     S  +A ++VL+  T++V G
Sbjct: 55  TPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGG 114

Query: 206 EPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVS 259
           + Y++   L R +  N G      +H + +    +G LY   A    K+W + +
Sbjct: 115 KQYYYLSILTRTADGNEG-----GKHQLVTATVNDGKLYICKAQAGDKRWFKGA 163

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 78.4 bits (192), Expect = 9e-18
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 35/193 (18%)

Query: 71  PTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNAR 130
           P           +  + D  + Y +LYP           W+                 A 
Sbjct: 2   PLGSCGGVGIASLQRYSDTKDGYEFLYP---------NGWIGVDVK-----------GAS 41

Query: 131 LRIVSERVDIIDNLI-ISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQR 189
             +     D+I+    +SV I                 A DV    +   +     +SQ 
Sbjct: 42  PGVDVVFRDLIERDENLSVIISEIPSDK---TLTDLGTATDVGYRFMKTVND----ASQG 94

Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
             ++ +++A     DG+ Y+  EY +           N+ RH +AS     G L +   S
Sbjct: 95  DRQAELINAEARDEDGQVYYTLEYRVLVGD-------NVERHDLASVTTNRGKLITFDLS 147

Query: 250 TLGKQWDEVSLFL 262
           T   +WD V    
Sbjct: 148 TAEDRWDTVKSLF 160

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 73.8 bits (180), Expect = 4e-16
 Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 34/177 (19%)

Query: 83  MASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIID 142
           + ++VD  + Y +LYP           WV+ +  +          +     + E  + + 
Sbjct: 8   LQAYVDSYDGYEFLYP---------RGWVQVQVED--------PVDVVFHDIIETTENV- 49

Query: 143 NLIISVTIGPPNVQF-LKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTS 201
               SV +        L+           +  ++++   + R         S+++ A + 
Sbjct: 50  ----SVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPSESGR--------SSALIAATSQ 97

Query: 202 KVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEV 258
           K D + Y+  EY +         +    RH ++S A   G +Y++S S   ++W +V
Sbjct: 98  KADDKTYYILEYAVTLPGDGNTAQ---QRHNLSSIAVSRGKVYTLSVSAPEERWPKV 151

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 60/416 (14%), Positives = 100/416 (24%), Gaps = 168/416 (40%)

Query: 6   PSLSLPRLHFI----------RNHRGSIVQGQKNCRLNNKAIVCS--CASSKPIQQNGF- 52
              ++ RL             R  +  ++ G        K  V    C S K   +  F 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTWVALDVCLSYKVQCKMDFK 183

Query: 53  --------CRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSK 104
                   C     +  +   L             D    S  D  +             
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQI---------DPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 105 KFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKS 164
           + L K       + Y        N  L        ++ N           VQ     +  
Sbjct: 235 RRLLKS------KPY-------ENCLL--------VLLN-----------VQ-----NAK 257

Query: 165 TWNA-------------KDVADSVLSDKSALRVTSSQRM-----AES-----SVLDAHTS 201
            WNA             K V D  LS  +   ++           E        LD    
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 202 K-----VDGEPY---------------W-FYEYL--------IRKSPTNLGQEPNLYRHY 232
                 +   P                W  ++++        I  S   L  EP  YR  
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKM 374

Query: 233 VASTAEREGYLY--------SISASTLGKQW-----DEVSLFLSTRAHTHKCNNKYL--R 277
                    +           I    L   W      +V + +      +K +   L  +
Sbjct: 375 ---------FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV------NKLHKYSLVEK 419

Query: 278 QTKDHVYVMMQM----------GPFLEKSVASFHLLP---PTDDYVPPYKDPWRFW 320
           Q K+    +  +             L +S+   + +P    +DD +PPY D + + 
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	96.3
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	90.65

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=1e-37  Score=275.44  Aligned_cols=165  Identities=21%  Similarity=0.350  Sum_probs=125.0

Q ss_pred             cCccceecCCCceEEeccCCCC-CccccccccccccccccCCCCCCCCCcceEEe-ecccccccceeeEEEeCCChhhhh
Q 020921           81 VKMASFVDEINAYTYLYPMELP-SKKFLFKWVESRKPERYSSAAPLSPNARLRIV-SERVDIIDNLIISVTIGPPNVQFL  158 (320)
Q Consensus        81 ~~f~~~~D~~dGYsFlYP~~W~-s~ev~~~G~d~rf~D~~~s~~pLs~n~rvrIV-se~~si~dnl~VsVslGpP~~~Fl  158 (320)
                      .+|+.|.  +|||+|+||.+|. .+++.++|++++|+|+++..    +|++|.|. .++++|.|       +|+|+++ +
T Consensus         7 ~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~----~nvsV~v~p~~~~si~d-------lGspe~~-~   72 (177)
T 1v2b_A            7 TDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDAT----SNVIVAITPTDKKSITD-------FGSPEQF-L   72 (177)
T ss_dssp             CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEE----EEEEEEEEECSCSSGGG-------GCSHHHH-H
T ss_pred             CCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCC----ccEEEEEeCCCCCChhH-------CCCHHHH-H
Confidence            4589997  9999999999995 33466789999999999844    56667775 57799999       9999972 2


Q ss_pred             cccccccccHHHHHhhhcccc--cccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEE
Q 020921          159 KSKDKSTWNAKDVADSVLSDK--SALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVAST  236 (320)
Q Consensus       159 ~~~d~~~w~g~~vak~vLa~~--~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~  236 (320)
                      +++      ++.|.+++++++  ++++|. ++.+++++||+|++|++||++||+|||+++++     .+.|++||+|+++
T Consensus        73 ~~v------~~~l~~~~~~~~~~~~~gf~-~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~-----~g~e~~rH~l~~~  140 (177)
T 1v2b_A           73 SQV------DYLLGRQAYSGKTDSEGGFE-SDAVAIANVLETSTAEVGGKQYYYLSILTRTA-----DGNEGGKHQLVTA  140 (177)
T ss_dssp             HHT------GGGC-------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC----------CCEEEEEEE
T ss_pred             HHH------HHHHHHHhhcccccccCCcc-cCcccceEEEEeEEEEeCCeEEEEEEEEEecC-----CCCccccEEEEEE
Confidence            211      667888888764  444444 34556899999999999999999999999754     4567999999999


Q ss_pred             EEECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhh-hhhHHHHhhceeee
Q 020921          237 AEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQ-MGPFLEKSVASFHL  302 (320)
Q Consensus       237 aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~SF~l  302 (320)
                      +|+|||||||++|++|+||+                               + |++.|+++++||+|
T Consensus       141 tv~~gkLY~l~~~a~e~~W~-------------------------------k~~~~~l~~v~~SF~v  176 (177)
T 1v2b_A          141 TVNDGKLYICKAQAGDKRWF-------------------------------KGAKKFVENTATSFSL  176 (177)
T ss_dssp             EEETTEEEEEEEEEEGGGCS-------------------------------TTTTHHHHHHHHTCEE
T ss_pred             EEECCEEEEEEEecCHHHhh-------------------------------hhHHHHHHHHHhheec
Confidence            99999999999999999999                               9 59999999999997

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=1.3e-34  Score=248.97  Aligned_cols=157  Identities=19%  Similarity=0.388  Sum_probs=133.2

Q ss_pred             cCccceecCCCceEEeccCCCCCcccccc-ccccccccccCCCCCCCCCcceEEe--ecccccccceeeEEEeCCChhhh
Q 020921           81 VKMASFVDEINAYTYLYPMELPSKKFLFK-WVESRKPERYSSAAPLSPNARLRIV--SERVDIIDNLIISVTIGPPNVQF  157 (320)
Q Consensus        81 ~~f~~~~D~~dGYsFlYP~~W~s~ev~~~-G~d~rf~D~~~s~~pLs~n~rvrIV--se~~si~dnl~VsVslGpP~~~F  157 (320)
                      .+|..|.|+.+||+|+||.+|.  ++.++ |++++|+|.++..    .|++|.|.  ....+|.|       +|+|+++ 
T Consensus         6 ~g~~~~~D~~~gysf~~P~~W~--~~~~~~g~~v~f~d~~~~~----~~v~V~v~p~~~~~~l~~-------~G~~e~v-   71 (165)
T 2xb3_A            6 SGLQAYVDSYDGYEFLYPRGWV--QVQVEDPVDVVFHDIIETT----ENVSVVVNTVASTKSLEE-------LGSPEEV-   71 (165)
T ss_dssp             CCEEEEEETTTTEEEEEETTEE--EECCCTTEEEEEEESSCTT----SEEEEEEEECSSCCCSGG-------GCCHHHH-
T ss_pred             CCceEEEcCCCCEEEEcCCCCe--EecCCCCceEEEECcccCC----ceEEEEEecCCCCCChHH-------cCCHHHH-
Confidence            4599999999999999999997  44455 9999999998744    45666664  23388999       9999987 


Q ss_pred             hcccccccccHHHHHhhhcccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEE
Q 020921          158 LKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTA  237 (320)
Q Consensus       158 l~~~d~~~w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~a  237 (320)
                                ++.|++++++++++++        .++|+++++|+.||++||+|||.+++. ..  ...++.||+|++++
T Consensus        72 ----------a~~l~~~~~~~~~~~~--------~~~l~~a~~r~~~G~~yY~~Ey~~~~~-~~--~~~~~~rh~l~~~~  130 (165)
T 2xb3_A           72 ----------GDRLLRNIIAPSESGR--------SSALIAATSQKADDKTYYILEYAVTLP-GD--GNTAQQRHNLSSIA  130 (165)
T ss_dssp             ----------HHHHHHHTTSCTTSSC--------EEEEEEEEEEEETTEEEEEEEEEEECC--------CCEEEEEEEEE
T ss_pred             ----------HHHHHHHhhcCCCCCc--------ceEEEEeeeeecCCceEEEEEEEEecC-CC--ccCccccEEEEEEE
Confidence                      9999999998775555        789999999999999999999999632 10  11358999999999


Q ss_pred             EECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeeee
Q 020921          238 EREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLL  303 (320)
Q Consensus       238 V~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~  303 (320)
                      +++||||+|++|+||++|+                               ++++.|+++++||++|
T Consensus       131 v~~g~lY~l~~sape~~w~-------------------------------~~~~~l~~v~~SF~v~  165 (165)
T 2xb3_A          131 VSRGKVYTLSVSAPEERWP-------------------------------KVEDQFKTIVSSFTVY  165 (165)
T ss_dssp             EETTEEEEEEEEEEGGGHH-------------------------------HHHHHHHHHHHTCEEC
T ss_pred             EECCEEEEEEEecCHHHhH-------------------------------HHHHHHHHHHhhEEeC
Confidence            9999999999999999999                               9999999999999986

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=2.9e-35  Score=255.95  Aligned_cols=153  Identities=22%  Similarity=0.344  Sum_probs=134.7

Q ss_pred             ccCccceecCCCceEEeccCCCCCcccccc----ccccccccccCCCCCCCCCcceEEe-ecc-cccccceeeEEEeCCC
Q 020921           80 DVKMASFVDEINAYTYLYPMELPSKKFLFK----WVESRKPERYSSAAPLSPNARLRIV-SER-VDIIDNLIISVTIGPP  153 (320)
Q Consensus        80 a~~f~~~~D~~dGYsFlYP~~W~s~ev~~~----G~d~rf~D~~~s~~pLs~n~rvrIV-se~-~si~dnl~VsVslGpP  153 (320)
                      ..+|+.|.|+.|||+|+||.+|.  ++.+.    |++++|+|.++..    +|++|.|. ..+ ++|.|       +|+|
T Consensus        11 ~~g~~~y~d~~~gy~f~~P~gW~--~~~~~~~~~g~~v~f~d~~~~~----~nvsV~v~p~~~~~si~d-------~G~p   77 (170)
T 2lnj_A           11 IASLQRYSDTKDGYEFLYPNGWI--GVDVKGASPGVDVVFRDLIERD----ENLSVIISEIPSDKTLTD-------LGTA   77 (170)
Confidence            34599999999999999999997  33445    9999999999855    45557765 333 88999       9999


Q ss_pred             hhhhhcccccccccHHHHHhhhcccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCC-CCcceE
Q 020921          154 NVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEP-NLYRHY  232 (320)
Q Consensus       154 ~~~Fl~~~d~~~w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~-e~~RH~  232 (320)
                      +++           ++.|++.+++++++++        +++||++++++.||++||+|||.+        +.+ ++.||+
T Consensus        78 e~v-----------a~~l~~~~~~~~~~~~--------~a~li~a~~~~~~G~~yY~~Ey~~--------~~~~~~~rh~  130 (170)
T 2lnj_A           78 TDV-----------GYRFMKTVNDASQGDR--------QAELINAEARDEDGQVYYTLEYRV--------LVGDNVERHD  130 (170)
Confidence            987           9999999998876655        799999999999999999999999        444 799999


Q ss_pred             EEEEEEECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeeee
Q 020921          233 VASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLL  303 (320)
Q Consensus       233 Lav~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~  303 (320)
                      |++++|++|+||+|++|+||++|+                               ++++.|+++++||+|+
T Consensus       131 l~~~~v~~gklY~l~~~ape~~w~-------------------------------~~~~~l~~v~~SF~v~  170 (170)
T 2lnj_A          131 LASVTTNRGKLITFDLSTAEDRWD-------------------------------TVKSLFDTVASSFHVY  170 (170)
Confidence            999999999999999999999999                               9999999999999985

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=96.30  E-value=0.031  Score=46.91  Aligned_cols=73  Identities=11%  Similarity=0.093  Sum_probs=60.6

Q ss_pred             cEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECCEEEEEEcccCcccchhhhhccccccccccccc
Q 020921          194 SVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNN  273 (320)
Q Consensus       194 ~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~  273 (320)
                      .++.....+.+|.+--.+||.=        ......+|++-++.+.++++|.|+.+++..-|+                 
T Consensus        72 ~~~~~~~~~l~g~~a~~~e~~~--------~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~-----------------  126 (148)
T 1tu1_A           72 KLHKRWDINIHGHAAVLLDYQW--------QREGRDLMLRQVFIERRPAVLITTLTTTPADLP-----------------  126 (148)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEE--------EETTEEEEEEEEEECCSSSEEEEEEEECGGGHH-----------------
T ss_pred             EEeeeEeEEEcCCcEEEEEEEE--------ccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCH-----------------
Confidence            4444444456899888888888        456677999999999888999999999999999                 


Q ss_pred             ccccccchhhHHHhhhhhHHHHhhceeeeeCC
Q 020921          274 KYLRQTKDHVYVMMQMGPFLEKSVASFHLLPP  305 (320)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~~~  305 (320)
                                    .-++.|+.+++||++-++
T Consensus       127 --------------~~~~~~~~i~~Sf~~~~~  144 (148)
T 1tu1_A          127 --------------HHEPAWKQAMQTLVPRPT  144 (148)
T ss_dssp             --------------HHHHHHHHHHHTCEECCC
T ss_pred             --------------HHHHHHHHHHHhcccCCC
Confidence                          899999999999997543

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=90.65  E-value=0.7  Score=40.28  Aligned_cols=72  Identities=17%  Similarity=0.137  Sum_probs=55.3

Q ss_pred             EEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcce---EEEEEEEECCEEEEE--EcccCcccchhhhhccccccccc
Q 020921          195 VLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRH---YVASTAEREGYLYSI--SASTLGKQWDEVSLFLSTRAHTH  269 (320)
Q Consensus       195 LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH---~Lav~aV~~GkLYTL--~aqtpEkRW~~~~~~~~~~~~~~  269 (320)
                      +++-...+++|.+-+..||.=        ..+..+.+   ...++...+|..|.+  ++++.+.+=+             
T Consensus        84 ~~~r~~~~~~G~pa~~iey~y--------~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~-------------  142 (161)
T 3lyd_A           84 ERGRTETTVDGFPAYHIEYAY--------RHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTA-------------  142 (161)
T ss_dssp             EEEEEEEEETTEEEEEEEEEE--------EETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHH-------------
T ss_pred             eecccccccCCcccEEEEEEE--------ecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccch-------------
Confidence            333344588999999999996        33555666   345555666766655  9999999999             


Q ss_pred             ccccccccccchhhHHHhhhhhHHHHhhceeeeeCC
Q 020921          270 KCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLPP  305 (320)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~~~  305 (320)
                                        ...+.|+++++|++++|-
T Consensus       143 ------------------~~~~d~q~iv~sl~v~p~  160 (161)
T 3lyd_A          143 ------------------DYWDTFRLMHADLTVQPH  160 (161)
T ss_dssp             ------------------HHHHHHHHHHHTCEEETT
T ss_pred             ------------------HHHHHHHHHhheeEeccC
Confidence                              899999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	320
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	2e-21

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 87.1 bits (215), Expect = 2e-21
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 30/174 (17%)

Query: 91  NAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTI 150
           + +    P          KW  +++ E            R     +    +      V I
Sbjct: 9   DGFKLQIP---------SKWNPNKEVEYPGQVL------RFEDNFDATSNV-----IVAI 48

Query: 151 GPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTS-----SQRMAESSVLDAHTSKVDG 205
            P + + +            V   +     + +  S     S  +A ++VL+  T++V G
Sbjct: 49  TPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGG 108

Query: 206 EPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVS 259
           + Y++   L R +  N G      +H + +    +G LY   A    K+W + +
Sbjct: 109 KQYYYLSILTRTADGNEGG-----KHQLVTATVNDGKLYICKAQAGDKRWFKGA 157

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	320
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	97.88

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.5e-35  Score=255.52  Aligned_cols=161  Identities=19%  Similarity=0.327  Sum_probs=122.6

Q ss_pred             ccceecCCCceEEeccCCCCCc-cccccccccccccccCCCCCCCCCcceEEe-ecccccccceeeEEEeCCChhhhhcc
Q 020921           83 MASFVDEINAYTYLYPMELPSK-KFLFKWVESRKPERYSSAAPLSPNARLRIV-SERVDIIDNLIISVTIGPPNVQFLKS  160 (320)
Q Consensus        83 f~~~~D~~dGYsFlYP~~W~s~-ev~~~G~d~rf~D~~~s~~pLs~n~rvrIV-se~~si~dnl~VsVslGpP~~~Fl~~  160 (320)
                      |..|.|  |||+|+||++|..+ +....|++++|+|+++..    +|++|.|. .++.+|.+       +|+|+++    
T Consensus         3 ~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~----~nv~V~v~p~~~~sl~~-------~G~p~~~----   65 (171)
T d1v2ba_           3 FQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDAT----SNVIVAITPTDKKSITD-------FGSPEQF----   65 (171)
T ss_dssp             EEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEE----EEEEEEEEECSCSSGGG-------GCSHHHH----
T ss_pred             cccccC--CCEEEECCCCCceecccCCCCceEEEeccccCC----ceEEEEEecCCCcchhh-------ccChHHH----
Confidence            667776  89999999999533 455789999999999954    55667775 67789999       9999966    


Q ss_pred             cccccccHHHHHhhhcccccccc-----cccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEE
Q 020921          161 KDKSTWNAKDVADSVLSDKSALR-----VTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVAS  235 (320)
Q Consensus       161 ~d~~~w~g~~vak~vLa~~~sgR-----~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav  235 (320)
                             ++.++..++.+...+.     ...++.+++++|++|++++.||++||+|||.+++.     .+.+++||+|++
T Consensus        66 -------~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~-----~~~~~~rh~l~~  133 (171)
T d1v2ba_          66 -------LSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTA-----DGNEGGKHQLVT  133 (171)
T ss_dssp             -------HHHTGGGC------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC----------CCEEEEEE
T ss_pred             -------HHHHHHHHhhhhhcccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecC-----CCCCcccEEEEE
Confidence                   5555554444332221     12356677899999999999999999999999744     567899999999


Q ss_pred             EEEECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhhh-hhHHHHhhceeeee
Q 020921          236 TAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQM-GPFLEKSVASFHLL  303 (320)
Q Consensus       236 ~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~SF~l~  303 (320)
                      ++|+|||||||++|+||+||+                               ++ +..|+++|+||+|.
T Consensus       134 ~~v~~grLYtl~~~~pe~~w~-------------------------------~~~~~~l~~~v~SF~v~  171 (171)
T d1v2ba_         134 ATVNDGKLYICKAQAGDKRWF-------------------------------KGAKKFVENTATSFSLA  171 (171)
T ss_dssp             EEEETTEEEEEEEEEEGGGCS-------------------------------TTTTHHHHHHHHTCEEC
T ss_pred             EEEeCCEEEEEEEecCHHHhh-------------------------------hhhHHHHHHHHhceEeC
Confidence            999999999999999999998                               74 67899999999983

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.88  E-value=3.8e-05  Score=62.01  Aligned_cols=74  Identities=11%  Similarity=0.079  Sum_probs=65.2

Q ss_pred             ccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECCEEEEEEcccCcccchhhhhcccccccccccc
Q 020921          193 SSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCN  272 (320)
Q Consensus       193 a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~  272 (320)
                      -++++...-+++|.+-+.+||.-        ..++...|+.-++.+.+|++|+|.+.++...|+                
T Consensus        71 ~~~~~~~~~~l~g~pa~~~~~t~--------~~~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~----------------  126 (144)
T d1tu1a_          71 FKLHKRWDINIHGHAAVLLDYQW--------QREGRDLMLRQVFIERRPAVLITTLTTTPADLP----------------  126 (144)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEE--------EETTEEEEEEEEEECCSSSEEEEEEEECGGGHH----------------
T ss_pred             cEEEeeEecccCCCcEEEEEEEE--------eeCCEeEEEEEEEEEeCCCEEEEEEecCCcCCH----------------
Confidence            46777666678999999999999        446677899999999999999999999999999                


Q ss_pred             cccccccchhhHHHhhhhhHHHHhhceeeeeCC
Q 020921          273 NKYLRQTKDHVYVMMQMGPFLEKSVASFHLLPP  305 (320)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~~~  305 (320)
                                     .-.+.|+++++||+..|.
T Consensus       127 ---------------~~~~~~~~il~Sf~p~p~  144 (144)
T d1tu1a_         127 ---------------HHEPAWKQAMQTLVPRPT  144 (144)
T ss_dssp             ---------------HHHHHHHHHHHTCEECCC
T ss_pred             ---------------HHHHHHHHHHHhCccCCC
Confidence                           889999999999998874