Citrus Sinensis ID: 020923

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MFVKAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPTVRVAVPY
cHHHHHHHHccccccccccccccEEEEEEEccEEccccccccccccccccccccEEEEEEEEccEEEcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccEEEEEEcccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHccccEEEEEccccEEEcccccEEEEEEccEEEEccccccccccHHHHHHHHHHHHcccccccccEEEEEccHHHHHcccEEEEEcccccEEEEEEEccEEcccccccHHHHHHHHHHHHHHHcccccccccccc
cHHHHHHHHHHcccccccHHHHccccEEEEcccEccHHHcEEEEEccEEEcccccEEEEEEEcccEEEcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccEEEEEEccccHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccEEEEcccccEEEEEccEEEccccHHHHHccHcHHHHHHHHHHcccccEEEEEEEEcccHHHHEEHcHEEEccccEEEEEEEEEcccEEccccccHHHHHHHHHHHHHHHcccccccccccc
MFVKAIERIKSTQANQKSKQQFLAMYSSIfggittdpaamvipmddhmvhrghgvfdtaaICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVsasncrkgslrywlsagvgdfqlspvgchqstFYVIVIqddspfvskgvkvitssipikppqfgtvksvnylpnvLSKMEAEETGAFAAIWldgegfiaegpnmnvaFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSgvlvrpvvqwdeqvigngkegPIAQALLDLILEdmqsgpptvrvavpy
MFVKAIErikstqanqksKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQtvsasncrkgSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITssipikppqfgtvkSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALvregklhgikvgnvtveegKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILedmqsgpptvrvavpy
MFVKAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPTVRVAVPY
*********************FLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILE***************
**VK*******************AMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPT***AVPY
MFVKAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPTVRVAVPY
MFVKAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPTVRVAVPY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFVKAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPTVRVAVPY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query319 2.2.26 [Sep-21-2011]
Q8L493373 Branched-chain-amino-acid yes no 0.968 0.828 0.700 1e-127
Q58414288 Putative branched-chain-a yes no 0.771 0.854 0.315 8e-28
O29329290 Putative branched-chain-a yes no 0.758 0.834 0.299 4e-26
O07597282 D-alanine aminotransferas yes no 0.789 0.893 0.302 7e-20
P54692283 D-alanine aminotransferas no no 0.815 0.918 0.288 4e-18
O86428307 Branched-chain-amino-acid yes no 0.749 0.778 0.271 6e-18
Q8W0Z7555 Branched-chain-amino-acid no no 0.761 0.437 0.266 1e-14
Q92B90289 D-alanine aminotransferas yes no 0.786 0.868 0.231 1e-14
O27481306 Putative branched-chain-a yes no 0.764 0.797 0.245 3e-14
Q71Z49289 D-alanine aminotransferas yes no 0.786 0.868 0.231 7e-14
>sp|Q8L493|BCAL3_ARATH Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=At5g57850 PE=2 SV=1 Back     alignment and function desciption
 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/314 (70%), Positives = 260/314 (82%), Gaps = 5/314 (1%)

Query: 7   ERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYL 66
           ER+K  +  Q    QFLAMYSS+  GITTDPAAMV+P+DDHMVHRGHGVFDTA I +GYL
Sbjct: 64  ERLKLARGGQ----QFLAMYSSVVDGITTDPAAMVLPLDDHMVHRGHGVFDTALIINGYL 119

Query: 67  YELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLS 126
           YELDQHLDRI+RSASMAKI LPFDR++++RILIQTVS S CR GSLRYWLSAG GDF LS
Sbjct: 120 YELDQHLDRILRSASMAKIPLPFDRETIKRILIQTVSVSGCRDGSLRYWLSAGPGDFLLS 179

Query: 127 PVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEET 186
           P  C + T Y IVI+ +      GVKV+TSSIPIKPP+F TVKSVNYLPNVLS+MEAE  
Sbjct: 180 PSQCLKPTLYAIVIKTNFAINPIGVKVVTSSIPIKPPEFATVKSVNYLPNVLSQMEAEAK 239

Query: 187 GAFAAIWLDGEGFIAEGPNMNVAFVTK-ERLLLMPQFDKILSGCTAKRVLTLAKALVREG 245
           GA+A IW+  +GFIAEGPNMNVAFV    + L+MP+FD +LSGCTAKR LTLA+ LV +G
Sbjct: 240 GAYAGIWVCKDGFIAEGPNMNVAFVVNGGKELVMPRFDNVLSGCTAKRTLTLAEQLVSKG 299

Query: 246 KLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILED 305
            L  +KV +VTVE+GKKA+EM+L+GSG+ +RPV+QWDE+ IG GKEGPIA+ALLDL+LED
Sbjct: 300 ILKTVKVMDVTVEDGKKADEMMLIGSGIPIRPVIQWDEEFIGEGKEGPIAKALLDLLLED 359

Query: 306 MQSGPPTVRVAVPY 319
           M+SGPP+VRV VPY
Sbjct: 360 MRSGPPSVRVLVPY 373

Arabidopsis thaliana (taxid: 3702)
>sp|Q58414|ILVE_METJA Putative branched-chain-amino-acid aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|O29329|ILVE_ARCFU Putative branched-chain-amino-acid aminotransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|O07597|DAAA_BACSU D-alanine aminotransferase OS=Bacillus subtilis (strain 168) GN=dat PE=3 SV=1 Back     alignment and function description
>sp|P54692|DAAA_BACLI D-alanine aminotransferase OS=Bacillus licheniformis GN=dat PE=3 SV=1 Back     alignment and function description
>sp|O86428|ILVE_PSEAE Branched-chain-amino-acid aminotransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ilvE PE=1 SV=2 Back     alignment and function description
>sp|Q8W0Z7|BCAL1_ARATH Branched-chain-amino-acid aminotransferase-like protein 1 OS=Arabidopsis thaliana GN=At3g05190 PE=2 SV=1 Back     alignment and function description
>sp|Q92B90|DAAA_LISIN D-alanine aminotransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=dat PE=3 SV=1 Back     alignment and function description
>sp|O27481|ILVE_METTH Putative branched-chain-amino-acid aminotransferase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=ilvE PE=3 SV=2 Back     alignment and function description
>sp|Q71Z49|DAAA_LISMF D-alanine aminotransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dat PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
225430001388 PREDICTED: branched-chain-amino-acid ami 0.993 0.817 0.801 1e-151
255551024318 D-alanine aminotransferase, putative [Ri 0.993 0.996 0.776 1e-148
356565786382 PREDICTED: branched-chain-amino-acid ami 0.993 0.829 0.783 1e-145
350538939395 4-amino-4-deoxychorismate lyase [Solanum 0.990 0.8 0.75 1e-142
449436870393 PREDICTED: branched-chain-amino-acid ami 0.990 0.804 0.723 1e-139
449508021338 PREDICTED: branched-chain-amino-acid ami 0.990 0.934 0.723 1e-139
224142999294 predicted protein [Populus trichocarpa] 0.921 1.0 0.795 1e-139
356515583345 PREDICTED: branched-chain-amino-acid ami 0.990 0.915 0.743 1e-138
413936396416 hypothetical protein ZEAMMB73_021838 [Ze 0.996 0.764 0.676 1e-128
115445503389 Os02g0273100 [Oryza sativa Japonica Grou 0.996 0.817 0.682 1e-127
>gi|225430001|ref|XP_002284106.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic [Vitis vinifera] gi|296081877|emb|CBI20882.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/317 (80%), Positives = 287/317 (90%)

Query: 3   VKAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAIC 62
           ++AIER+K++Q NQKSKQQ+LAMYSSIFGGITTD AAMVIPMDDHMVHRGHGVFDTAAI 
Sbjct: 72  LEAIERLKTSQENQKSKQQYLAMYSSIFGGITTDKAAMVIPMDDHMVHRGHGVFDTAAIM 131

Query: 63  DGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGD 122
           DGYLYELDQHLDR +RSASMAKI  PFDR+S+R ILIQTVSAS CRKGSLRYWLSAG GD
Sbjct: 132 DGYLYELDQHLDRFLRSASMAKINPPFDRESIRGILIQTVSASKCRKGSLRYWLSAGPGD 191

Query: 123 FQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKME 182
           FQLSP GC QS  Y IVIQD SPF  KG+KV+TSS+PIK PQF T+KSVNYLPNVLSKME
Sbjct: 192 FQLSPSGCQQSALYAIVIQDLSPFDQKGIKVVTSSVPIKTPQFATMKSVNYLPNVLSKME 251

Query: 183 AEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALV 242
           AEE G++AAIWLD +GFIAEGPNMNVAFVTKE+ L+MP FDKILSGCTAKRVL LA+ L+
Sbjct: 252 AEENGSYAAIWLDDDGFIAEGPNMNVAFVTKEKELVMPHFDKILSGCTAKRVLALAEGLM 311

Query: 243 REGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLI 302
           REGKL GI+VGN++VEEGKKA+EM+L+GSGVLVRPV+QWDE VIG+GKEGP+  +LL+LI
Sbjct: 312 REGKLQGIRVGNLSVEEGKKADEMMLIGSGVLVRPVLQWDEHVIGDGKEGPVTLSLLNLI 371

Query: 303 LEDMQSGPPTVRVAVPY 319
           L+DM+SGPPTVRV VPY
Sbjct: 372 LDDMKSGPPTVRVPVPY 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255551024|ref|XP_002516560.1| D-alanine aminotransferase, putative [Ricinus communis] gi|223544380|gb|EEF45901.1| D-alanine aminotransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356565786|ref|XP_003551118.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|350538939|ref|NP_001234878.1| 4-amino-4-deoxychorismate lyase [Solanum lycopersicum] gi|50345543|gb|AAT74744.1| 4-amino-4-deoxychorismate lyase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449436870|ref|XP_004136215.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449508021|ref|XP_004163194.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224142999|ref|XP_002324812.1| predicted protein [Populus trichocarpa] gi|222866246|gb|EEF03377.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356515583|ref|XP_003526478.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|413936396|gb|AFW70947.1| hypothetical protein ZEAMMB73_021838 [Zea mays] Back     alignment and taxonomy information
>gi|115445503|ref|NP_001046531.1| Os02g0273100 [Oryza sativa Japonica Group] gi|113536062|dbj|BAF08445.1| Os02g0273100 [Oryza sativa Japonica Group] gi|215708697|dbj|BAG93966.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
TAIR|locus:2174433373 ADCL "4-amino-4-deoxychorismat 0.968 0.828 0.700 2.2e-114
TIGR_CMR|CHY_0515293 CHY_0515 "branched-chain amino 0.811 0.883 0.303 1.9e-28
TIGR_CMR|BA_1416298 BA_1416 "branched-chain amino 0.799 0.855 0.289 4.6e-25
TIGR_CMR|BA_1849299 BA_1849 "branched-chain amino 0.796 0.849 0.285 1.3e-22
UNIPROTKB|O07597282 dat "D-alanine aminotransferas 0.802 0.907 0.303 9e-22
UNIPROTKB|P54692283 dat "D-alanine aminotransferas 0.811 0.915 0.298 1.9e-21
TIGR_CMR|BA_2256291 BA_2256 "D-amino acid aminotra 0.821 0.900 0.276 6.3e-21
TIGR_CMR|CHY_2669285 CHY_2669 "aminodeoxychorismate 0.768 0.859 0.295 1.7e-20
TIGR_CMR|CJE_0318304 CJE_0318 "branched-chain amino 0.764 0.802 0.304 1.9e-19
TIGR_CMR|SPO_3604286 SPO_3604 "D-amino acid aminotr 0.755 0.842 0.274 1.1e-18
TAIR|locus:2174433 ADCL "4-amino-4-deoxychorismate lyase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
 Identities = 220/314 (70%), Positives = 260/314 (82%)

Query:     7 ERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYL 66
             ER+K  +  Q    QFLAMYSS+  GITTDPAAMV+P+DDHMVHRGHGVFDTA I +GYL
Sbjct:    64 ERLKLARGGQ----QFLAMYSSVVDGITTDPAAMVLPLDDHMVHRGHGVFDTALIINGYL 119

Query:    67 YELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLS 126
             YELDQHLDRI+RSASMAKI LPFDR++++RILIQTVS S CR GSLRYWLSAG GDF LS
Sbjct:   120 YELDQHLDRILRSASMAKIPLPFDRETIKRILIQTVSVSGCRDGSLRYWLSAGPGDFLLS 179

Query:   127 PVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEET 186
             P  C + T Y IVI+ +      GVKV+TSSIPIKPP+F TVKSVNYLPNVLS+MEAE  
Sbjct:   180 PSQCLKPTLYAIVIKTNFAINPIGVKVVTSSIPIKPPEFATVKSVNYLPNVLSQMEAEAK 239

Query:   187 GAFAAIWLDGEGFIAEGPNMNVAFVTKE-RLLLMPQFDKILSGCTAKRVLTLAKALVREG 245
             GA+A IW+  +GFIAEGPNMNVAFV    + L+MP+FD +LSGCTAKR LTLA+ LV +G
Sbjct:   240 GAYAGIWVCKDGFIAEGPNMNVAFVVNGGKELVMPRFDNVLSGCTAKRTLTLAEQLVSKG 299

Query:   246 KLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILED 305
              L  +KV +VTVE+GKKA+EM+L+GSG+ +RPV+QWDE+ IG GKEGPIA+ALLDL+LED
Sbjct:   300 ILKTVKVMDVTVEDGKKADEMMLIGSGIPIRPVIQWDEEFIGEGKEGPIAKALLDLLLED 359

Query:   306 MQSGPPTVRVAVPY 319
             M+SGPP+VRV VPY
Sbjct:   360 MRSGPPSVRVLVPY 373
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0008153 "para-aminobenzoic acid biosynthetic process" evidence=IDA
GO:0008696 "4-amino-4-deoxychorismate lyase activity" evidence=IGI
GO:0046654 "tetrahydrofolate biosynthetic process" evidence=IGI
GO:0009570 "chloroplast stroma" evidence=IDA
TIGR_CMR|CHY_0515 CHY_0515 "branched-chain amino acid aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1416 BA_1416 "branched-chain amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1849 BA_1849 "branched-chain amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|O07597 dat "D-alanine aminotransferase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] Back     alignment and assigned GO terms
UNIPROTKB|P54692 dat "D-alanine aminotransferase" [Bacillus licheniformis (taxid:1402)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2256 BA_2256 "D-amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2669 CHY_2669 "aminodeoxychorismate lyase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0318 CJE_0318 "branched-chain amino acid aminotransferase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3604 SPO_3604 "D-amino acid aminotransferase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L493BCAL3_ARATHNo assigned EC number0.70060.96860.8284yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032460001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (388 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021859001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (1031 aa)
     •• 0.900
GSVIVG00035298001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1025 aa)
     •  0.899
GSVIVG00026904001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (363 aa)
     •  0.900
GSVIVG00024844001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (358 aa)
     •  0.899
GSVIVG00022469001
SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (262 aa)
     •  0.899
GSVIVG00020487001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (72 aa)
     •  0.899
GSVIVG00019784001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (925 aa)
     •  0.899
GSVIVG00014349001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (385 aa)
     •  0.899
GSVIVG00007414001
SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (888 aa)
     •  0.899
GSVIVG00006883001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (927 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
PLN02845336 PLN02845, PLN02845, Branched-chain-amino-acid amin 0.0
cd00449256 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen 3e-65
cd01559249 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychor 5e-63
cd01558270 cd01558, D-AAT_like, D-Alanine aminotransferase (D 2e-52
COG0115284 COG0115, IlvE, Branched-chain amino acid aminotran 6e-41
pfam01063231 pfam01063, Aminotran_4, Aminotransferase class IV 8e-39
PRK06680286 PRK06680, PRK06680, D-amino acid aminotransferase; 4e-37
PRK08320288 PRK08320, PRK08320, branched-chain amino acid amin 6e-36
cd01557279 cd01557, BCAT_beta_family, BCAT_beta_family: Branc 3e-32
TIGR01122298 TIGR01122, ilvE_I, branched-chain amino acid amino 3e-32
PRK12479299 PRK12479, PRK12479, branched-chain amino acid amin 2e-27
PRK06606306 PRK06606, PRK06606, branched-chain amino acid amin 5e-26
TIGR01121276 TIGR01121, D_amino_aminoT, D-amino acid aminotrans 5e-25
PRK07650283 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyas 7e-18
PRK07849292 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyas 1e-17
PRK12400290 PRK12400, PRK12400, D-amino acid aminotransferase; 2e-17
TIGR03461261 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase 1e-15
TIGR01123313 TIGR01123, ilvE_II, branched-chain amino acid amin 1e-10
PRK07544292 PRK07544, PRK07544, branched-chain amino acid amin 4e-10
PRK06092268 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyas 5e-10
PRK13357356 PRK13357, PRK13357, branched-chain amino acid amin 1e-09
PRK13356286 PRK13356, PRK13356, aminotransferase; Provisional 5e-04
PLN02259388 PLN02259, PLN02259, branched-chain-amino-acid amin 0.004
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information 
 Score =  556 bits (1436), Expect = 0.0
 Identities = 213/316 (67%), Positives = 249/316 (78%), Gaps = 2/316 (0%)

Query: 5   AIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDG 64
            I+R++S   +   KQ F AMYSS+ GGITTDPAAMVIP+DDHMVHRGHGVFDTA I DG
Sbjct: 21  MIQRLQSK-WSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDG 79

Query: 65  YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQ 124
           +LYELD HLDR +RSA+ AKI LPFDR +LRRIL+QTV+AS CR GSLRYWLSAG G F 
Sbjct: 80  HLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNGSLRYWLSAGPGGFS 139

Query: 125 LSPVGCHQSTFYVIVIQDDSPFV-SKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEA 183
           LSP GC +  FY +VI+D       +GVKV+TSS+PIKPPQF TVKSVNYLPN LS+MEA
Sbjct: 140 LSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEA 199

Query: 184 EETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVR 243
           EE GAFA IWLD EGF+AEGPNMNVAF+T +  L++P FDKILSGCTA+RVL LA  LV 
Sbjct: 200 EERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKILSGCTARRVLELAPRLVS 259

Query: 244 EGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLIL 303
            G L G+K   ++VEE K A+EM+L+GSGV V P+V WD Q IG+GK GPI  AL DL+L
Sbjct: 260 PGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGKVGPITLALHDLLL 319

Query: 304 EDMQSGPPTVRVAVPY 319
           +DM+SGPP VR  VPY
Sbjct: 320 DDMRSGPPGVRTPVPY 335

Length = 336
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV Back     alignment and domain information
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase Back     alignment and domain information
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase Back     alignment and domain information
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
PLN02845336 Branched-chain-amino-acid aminotransferase-like pr 100.0
PRK12479299 branched-chain amino acid aminotransferase; Provis 100.0
TIGR01122298 ilvE_I branched-chain amino acid aminotransferase, 100.0
PRK08320288 branched-chain amino acid aminotransferase; Review 100.0
PRK06680286 D-amino acid aminotransferase; Reviewed 100.0
PRK07650283 4-amino-4-deoxychorismate lyase; Provisional 100.0
cd01558270 D-AAT_like D-Alanine aminotransferase (D-AAT_like) 100.0
PRK12400290 D-amino acid aminotransferase; Reviewed 100.0
PRK06606306 branched-chain amino acid aminotransferase; Valida 100.0
PRK13356286 aminotransferase; Provisional 100.0
TIGR01121276 D_amino_aminoT D-amino acid aminotransferase. Spec 100.0
PRK07544292 branched-chain amino acid aminotransferase; Valida 100.0
PRK07849292 4-amino-4-deoxychorismate lyase; Provisional 100.0
PLN03117355 Branched-chain-amino-acid aminotransferase; Provis 100.0
PRK06092268 4-amino-4-deoxychorismate lyase; Reviewed 100.0
PLN02782403 Branched-chain amino acid aminotransferase 100.0
PRK13357356 branched-chain amino acid aminotransferase; Provis 100.0
cd00449256 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes 100.0
cd01559249 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya 100.0
TIGR01123313 ilvE_II branched-chain amino acid aminotransferase 100.0
TIGR03461261 pabC_Proteo aminodeoxychorismate lyase. Members of 100.0
cd01557279 BCAT_beta_family BCAT_beta_family: Branched-chain 100.0
PRK09266266 hypothetical protein; Provisional 100.0
PLN02259388 branched-chain-amino-acid aminotransferase 2 100.0
PLN02883384 Branched-chain amino acid aminotransferase 100.0
COG0115284 IlvE Branched-chain amino acid aminotransferase/4- 100.0
KOG0975379 consensus Branched chain aminotransferase BCAT1, p 100.0
PF01063231 Aminotran_4: Aminotransferase class IV; InterPro: 100.0
PRK07546209 hypothetical protein; Provisional 100.0
PRK07101187 hypothetical protein; Provisional 100.0
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information 
Probab=100.00  E-value=2.2e-70  Score=514.89  Aligned_cols=314  Identities=68%  Similarity=1.110  Sum_probs=281.5

Q ss_pred             HHHHHHHHhcccCcccchhhhhheecccCCeeeCCCCceeCCCCccccccceeeeeeeeeCCeecChHHHHHHHHHHHHH
Q 020923            3 VKAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASM   82 (319)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G~~~~l~~Hl~RL~~Sa~~   82 (319)
                      .+|+||++++.+ ...++++.+||.+|+||++++.+++.|+++||||+||||+|||+|+++|++++|++|++||.+||+.
T Consensus        19 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~~G~~~~le~Hl~RL~~Sa~~   97 (336)
T PLN02845         19 AEMIQRLQSKWS-DAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDGHLYELDAHLDRFLRSAAK   97 (336)
T ss_pred             HHHHHHHHhhhc-cccccceeeeeeEEECCEEccHHHCcccccccceeecceEEEEEEEECCEEcCHHHHHHHHHHHHHh
Confidence            479999999555 3334599999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHHcCCCCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCcc-cCCCcEEEEeeeecC
Q 020923           83 AKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF-VSKGVKVITSSIPIK  161 (319)
Q Consensus        83 l~i~~p~~~~~l~~~i~~l~~~~~~~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~~~~~~  161 (319)
                      |+|+.|++.++|++.+.+++++++..++++|+++++|.+.+++.+..+..|++++...|.+... ..+|+++.++++.+.
T Consensus        98 L~i~~p~~~~~l~~~i~~~i~~~~~~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~gv~l~~~~~~~~  177 (336)
T PLN02845         98 AKIPLPFDRATLRRILLQTVAASGCRNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTSSVPIK  177 (336)
T ss_pred             hCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEccccccccccCCeEEEEeeeeec
Confidence            9999889999999999999999888889999999999877776655556788887776644222 257899988877766


Q ss_pred             CCCCCCccccccHHHHHHHHHHHHcCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCCCCcccHHHHHHHHHHHhh
Q 020923          162 PPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKAL  241 (319)
Q Consensus       162 ~~~~~~~Kt~ny~~~~~a~~~A~~~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~~iL~GitR~~vl~~~~~~  241 (319)
                      ++.++++||+||+.+++|+++|+++|+||+||+|++|+|+||+++||||+.++++|+||+++++|+||||+.||++|+++
T Consensus       178 ~~~~~~~Kt~nyl~~vla~~eA~~~G~deaLlln~~G~V~Egt~sNiF~v~~~~~l~TP~l~~iL~GItR~~vlela~~~  257 (336)
T PLN02845        178 PPQFATVKSVNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKILSGCTARRVLELAPRL  257 (336)
T ss_pred             CCccccchhhhhHHHHHHHHHHHHcCCCEEEEECCCCcEEEcCcceEEEEEECCEEEeCCCCCcCccHHHHHHHHHHHhh
Confidence            66678999999999999999999999999999999999999999999666569999999988899999999999999875


Q ss_pred             hhCC--ccceEEEEeeCHHHHhccceeeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHHHHHHcCCCCCcccCCC
Q 020923          242 VREG--KLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPPTVRVAVPY  319 (319)
Q Consensus       242 ~~~g--~~~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~~~i~~~~~~~~~~~~~  319 (319)
                      ...|  +  +|+|+.++++||.+|||+|+|||++||+||++||++.+++|++||+|++|++.|++...++...++.|++|
T Consensus       258 ~~~G~~i--~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~~id~~~~~~g~~gp~t~~L~~~~~~~~~~~~~~~~~~~~~  335 (336)
T PLN02845        258 VSPGDLR--GVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGKVGPITLALHDLLLDDMRSGPPGVRTPVPY  335 (336)
T ss_pred             hccCCce--EEEEEecCHHHHhcCCEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHhcCCCccceeccC
Confidence            2226  6  99999999999999999999999999999999999999988999999999999998888887777799998

>PRK12479 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>PRK08320 branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK06680 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>PRK12400 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK06606 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK13356 aminotransferase; Provisional Back     alignment and domain information
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase Back     alignment and domain information
>PRK07544 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional Back     alignment and domain information
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>PLN02782 Branched-chain amino acid aminotransferase Back     alignment and domain information
>PRK13357 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase Back     alignment and domain information
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>PRK09266 hypothetical protein; Provisional Back     alignment and domain information
>PLN02259 branched-chain-amino-acid aminotransferase 2 Back     alignment and domain information
>PLN02883 Branched-chain amino acid aminotransferase Back     alignment and domain information
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism] Back     alignment and domain information
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue Back     alignment and domain information
>PRK07546 hypothetical protein; Provisional Back     alignment and domain information
>PRK07101 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
1wrv_A308 Crystal Structure Of T.Th.Hb8 Branched-Chain Amino 3e-18
3u0g_A328 Crystal Structure Of Branched-Chain Amino Acid Amin 6e-17
1daa_A282 Crystallographic Structure Of D-Amino Acid Aminotra 8e-14
3lqs_A280 Complex Structure Of D-Amino Acid Aminotransferase 8e-14
3daa_A277 Crystallographic Structure Of D-Amino Acid Aminotra 9e-14
5daa_A277 E177k Mutant Of D-Amino Acid Aminotransferase Compl 3e-13
1g2w_A282 E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D 4e-13
1a0g_A282 L201a Mutant Of D-Amino Acid Aminotransferase Compl 4e-13
2zgi_A246 Crystal Structure Of Putative 4-Amino-4-Deoxychoris 6e-08
1a3g_A308 Branched-chain Amino Acid Aminotransferase From Esc 1e-07
1i1k_A309 Crystal Structure Of Eschelichia Coli Branched-chai 1e-07
1et0_A269 Crystal Structure Of Aminodeoxychorismate Lyase Fro 3e-07
2y4r_A292 Crystal Structure Of 4-Amino-4-Deoxychorismate Lyas 2e-04
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid Aminotransferase Length = 308 Back     alignment and structure 
Iteration: 1

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 129/277 (46%), Gaps = 17/277 (6%)
Query: 46  DHMVHRGHGVFDTAAICDGY----LYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
            H +H G  VF+     +      ++ L +H+ R   SA + ++++PF  + L   + + 
Sbjct: 26  SHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEV 85
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF----VSKGVKVITSS 157
           V  +  R   +R     G     ++P+  + +   V   +  +      V KG ++ITSS
Sbjct: 86  VRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSS 145
Query: 158 IPIKPPQFGTVKSV---NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKE 214
               P      K+    NY+ + L+KMEA   GA  A+ LD EG++AEG   N+ FV ++
Sbjct: 146 WARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFV-RD 204
Query: 215 RLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVL 274
            ++   +    L G T   V+ +AK L  E     ++V   T ++   A+E+ + G+   
Sbjct: 205 GVIYALEHSVNLEGITRDSVIRIAKDLGYE-----VQVVRATRDQLYMADEVFMTGTAAE 259
Query: 275 VRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPP 311
           V PV   D + IG G  GP+A  L ++ LE +    P
Sbjct: 260 VTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRP 296
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid Aminotransferase From Burkholderia Pseudomallei Length = 328 Back     alignment and structure
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Complexed With Pyridoxal-5'-Phosphate Length = 282 Back     alignment and structure
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And 4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta) Length = 280 Back     alignment and structure
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Inactivated By Pyridoxyl-D-Alanine Length = 277 Back     alignment and structure
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 277 Back     alignment and structure
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino Acid Aminotransferase Length = 282 Back     alignment and structure
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 282 Back     alignment and structure
>pdb|2ZGI|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate Lyase Length = 246 Back     alignment and structure
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From Escherichia Coli Length = 308 Back     alignment and structure
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino Acid Aminotransferase. Length = 309 Back     alignment and structure
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From Escherichia Coli Length = 269 Back     alignment and structure
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From Pseudomonas Aeruginosa Length = 292 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 4e-53
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 4e-52
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 3e-50
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 4e-50
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 2e-49
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 5e-43
1iye_A309 Branched-chain amino acid aminotransferase; hexame 1e-41
3u0g_A328 Putative branched-chain amino acid aminotransfera; 1e-41
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 1e-40
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 2e-39
3qqm_A221 MLR3007 protein; structural genomics, joint center 2e-30
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 3e-16
3dth_A372 Branched-chain amino acid aminotransferase; open t 1e-12
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 2e-11
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 4e-11
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Length = 272 Back     alignment and structure
 Score =  174 bits (444), Expect = 4e-53
 Identities = 57/271 (21%), Positives = 102/271 (37%), Gaps = 22/271 (8%)

Query: 41  VIPMDDHMVHRGH---GVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRI 97
              +D     R     G+F+T  +          H +R+  SA    I            
Sbjct: 16  SFGID----DRIFLGEGLFETIRVNSSKPSFAYMHWERLGNSARQLGIPFEISFDDWFEH 71

Query: 98  LIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSS 157
           LIQ +   N   G ++  LS G     L+  G        I    +       V++I+ +
Sbjct: 72  LIQKIQKDNLYHGGIKAILSGGPASRGLAERGQVSQL---IFQTFNYSIQKHPVRLISIN 128

Query: 158 -IPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERL 216
            +  K      +KSVNYL  ++++ +A   GA  A++ + E  + E    N+  +    L
Sbjct: 129 WLRDKANPLYQLKSVNYLEAIIAQRQAIAVGADDALFFNTENHVTETTCANLFLIENNIL 188

Query: 217 LLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVL 274
                 D IL G T  R+++  +          + V   ++T +  + A+ + L  S   
Sbjct: 189 YTPRVEDGILPGITRARLISHCQQH-------KMSVQEISLTKKRIEDADAVFLTNSLQG 241

Query: 275 VRPVVQWDEQVIGNGKEGPIAQALLDLILED 305
           +R V+  D  +       PI   L+ L+ +D
Sbjct: 242 IRRVLSLDNIIFEVN--HPIIDKLIFLLNQD 270
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Length = 269 Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315 Back     alignment and structure
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Length = 277 Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Length = 308 Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Length = 309 Back     alignment and structure
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328 Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285 Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Length = 246 Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Length = 221 Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Length = 194 Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365 Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 100.0
3u0g_A328 Putative branched-chain amino acid aminotransfera; 100.0
4dqn_A345 Putative branched-chain amino acid aminotransfera; 100.0
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 100.0
1iye_A309 Branched-chain amino acid aminotransferase; hexame 100.0
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 100.0
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 100.0
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 100.0
3uzo_A358 Branched-chain-amino-acid aminotransferase; BCAT, 100.0
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 100.0
3dth_A372 Branched-chain amino acid aminotransferase; open t 100.0
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 100.0
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 100.0
3dtg_A372 Branched-chain amino acid aminotransferase; open t 100.0
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 100.0
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 100.0
3qqm_A221 MLR3007 protein; structural genomics, joint center 100.0
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 100.0
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Back     alignment and structure
Probab=100.00  E-value=9.6e-65  Score=464.57  Aligned_cols=270  Identities=23%  Similarity=0.357  Sum_probs=247.0

Q ss_pred             cccCCeeeCCCCceeCCCCccccccceeeeeeeeeCCeecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC
Q 020923           28 SIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNC  107 (319)
Q Consensus        28 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~~~  107 (319)
                      +|+||++++.+++.+++.||||+|||||||||++++|++|+|++|++||.+||++|+|+.|++.++|.+++.+++++++.
T Consensus         3 ~~~nG~~~~~~~~~i~~~d~g~~yGdgvFEtir~~~g~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~li~~n~~   82 (277)
T 3daa_A            3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL   82 (277)
T ss_dssp             EEETTEEEEGGGCCBCTTBHHHHTCCEEEEEEEEETTEETTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred             EEECCEEeEhHHCeechhhhHHhcccEEEEEEEEECCEEcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            59999999999999999999999999999999999999999999999999999999999889999999999999999988


Q ss_pred             CCceEEEEEeecCCCcccCCC-CCCccEEEEEEEeCCCc--ccCCCcEEEEeeeecCCCCCCCccccccHHHHHHHHHHH
Q 020923          108 RKGSLRYWLSAGVGDFQLSPV-GCHQSTFYVIVIQDDSP--FVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAE  184 (319)
Q Consensus       108 ~~~~iri~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~Kt~ny~~~~~a~~~A~  184 (319)
                      .+++||+++++|.+.+++.++ .+..|++++++.|.+.+  .+.+|+++.+++..  ++.++++||+||+.+++++++|+
T Consensus        83 ~~~~lri~vtrG~~~r~~~~p~~~~~~~~~i~~~p~~~~~~~~~~gv~~~~~~~~--r~~~~~~Kt~nyl~~~la~~eA~  160 (277)
T 3daa_A           83 NTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVEDI--RWLRCDIKSLNLLGAVLAKQEAH  160 (277)
T ss_dssp             CSEEEEEEEESCBCSCCSSCCSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEECC--CCSCTTSCBSCCHHHHHHHHHHH
T ss_pred             CcEEEEEEEEecCCCcCCCCCCCCCCcEEEEEEEECCCChHHHhCCeEEEEecCc--cccCCCcchhhhHHHHHHHHHHH
Confidence            899999999999776655543 44578899888887642  23579999887643  35678999999999999999999


Q ss_pred             HcCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCC-CCcccHHHHHHHHHHHhhhhCCccceEEEEeeCHHHHhcc
Q 020923          185 ETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKA  263 (319)
Q Consensus       185 ~~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~-~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~~a  263 (319)
                      ++|+||+||+| +|+|+|++++|| |+++||+|+|||++ ++|+||||+.|+++|+++   |+  +|+|+.++++||.+|
T Consensus       161 ~~g~~e~l~l~-~g~v~E~~~sNi-f~~~~~~l~TP~~~~~iL~GitR~~vl~~~~~~---g~--~v~e~~i~~~el~~a  233 (277)
T 3daa_A          161 EKGCYEAILHR-NNTVTEGSSSNV-FGIKDGILYTHPANNMILKGITRDVVIACANEI---NM--PVKEIPFTTHEALKM  233 (277)
T ss_dssp             HTTCSEEEEEE-TTEEEEETTBEE-EEEETTEEEECCSSTTSCCCHHHHHHHHHHHHT---TC--CEECCCCBHHHHHTC
T ss_pred             HCCCCEEEEEc-CCEEEEcCceEE-EEEECCEEECCCCcCCCCccHHHHHHHHHHHHc---CC--eEEEEeCCHHHHHhc
Confidence            99999999997 899999999999 55699999999986 799999999999999998   87  999999999999999


Q ss_pred             ceeeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHHHHH
Q 020923          264 EEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDM  306 (319)
Q Consensus       264 devfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~~~i  306 (319)
                      ||+|+|||++||+||.+||++.+++|++||+|++|+++|.+.|
T Consensus       234 devf~~ns~~~i~pV~~id~~~~~~g~~g~~t~~L~~~~~~~i  276 (277)
T 3daa_A          234 DELFVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFETKI  276 (277)
T ss_dssp             SEEEEEETTTEEEEEEEETTEESTTSSCCHHHHHHHHHHHTTC
T ss_pred             CeeeeecChhhEEEEEEECCEECCCCCcCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998543
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans} Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Back     alignment and structure
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A* Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Back     alignment and structure
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A* Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 319
d1iyea_304 e.17.1.1 (A:) Branched-chain aminoacid aminotransf 6e-38
d1daaa_277 e.17.1.1 (A:) D-aminoacid aminotransferase {Bacill 1e-36
d1i2ka_269 e.17.1.1 (A:) Aminodeoxychorismate lyase {Escheric 6e-22
d2a1ha1363 e.17.1.1 (A:3-365) Branched-chain aminoacid aminot 4e-11
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Length = 304 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

 Score =  135 bits (339), Expect = 6e-38
 Identities = 57/279 (20%), Positives = 105/279 (37%), Gaps = 17/279 (6%)

Query: 42  IPMDDHMVHRGHGVFDTAAICDG----YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRI 97
           + +  H +H G  VF+     D      ++   +H+ R+  SA + +  +      L   
Sbjct: 19  VHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEA 78

Query: 98  LIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF----VSKGVKV 153
               +  +N     +R  +  G     ++P   + +   +      +      + +G+  
Sbjct: 79  CRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDA 138

Query: 154 ITSSIPIKPP---QFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF 210
           + SS     P           NYL ++L   EA   G    I LD  G+I+EG   N+  
Sbjct: 139 MVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFE 198

Query: 211 VTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLG 270
           V    L   P     L G T   ++ LAK L  E +        ++ E    A+E+ + G
Sbjct: 199 VKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQ-----VLSRESLYLADEVFMSG 253

Query: 271 SGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSG 309
           +   + PV   D   +G G+ GP+ + +       + +G
Sbjct: 254 TAAEITPVRSVDGIQVGEGRCGPVTKRIQQA-FFGLFTG 291
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Length = 277 Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 363 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
d1iyea_304 Branched-chain aminoacid aminotransferase {Escheri 100.0
d1daaa_277 D-aminoacid aminotransferase {Bacillus sp., strain 100.0
d1i2ka_269 Aminodeoxychorismate lyase {Escherichia coli [TaxI 100.0
d2a1ha1363 Branched-chain aminoacid aminotransferase {Human ( 100.0
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-61  Score=447.75  Aligned_cols=277  Identities=22%  Similarity=0.347  Sum_probs=249.9

Q ss_pred             cccCCeeeCCCCceeCCCCccccccceeeeeeeeeCCe----ecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 020923           28 SIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGY----LYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVS  103 (319)
Q Consensus        28 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G~----~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~  103 (319)
                      +|+||++++.+++.||+.||||+||||||||||+++|+    +|+|++|++||.+||+.++++.|.+.+++.+.++++++
T Consensus         5 i~~nG~~~~~~~a~i~~~d~g~~yGdgvFEt~r~~~g~~~~~lf~l~~Hl~RL~~Sa~~l~i~~~~~~~~~~~~~~~~v~   84 (304)
T d1iyea_           5 IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR   84 (304)
T ss_dssp             EEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSSEEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred             EEECCEEeehHHCccCccccHHhhceeeeecEEEEECCCCCeecCHHHHHHHHHHhcccccCCCcchhhHHHHHHHHHHH
Confidence            59999999999999999999999999999999999886    89999999999999999999999999999999999999


Q ss_pred             HcCCCCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCc----ccCCCcEEEEeeeecCCC---CCCCccccccHHH
Q 020923          104 ASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSP----FVSKGVKVITSSIPIKPP---QFGTVKSVNYLPN  176 (319)
Q Consensus       104 ~~~~~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~l~~~~~~~~~~---~~~~~Kt~ny~~~  176 (319)
                      +++..++++|+.++++.+..++.++....+..++...+.+..    ....|+++.+++..|..+   ....+|+.||+.+
T Consensus        85 ~n~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~r~~~~~~~~~~~k~~n~~~~  164 (304)
T d1iyea_          85 KNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSS  164 (304)
T ss_dssp             HTTCSSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEECSSCCCCTTTSCTTSCBGGGHHHH
T ss_pred             hcccccceEEEEeeecccccccCCccccccceeeccccccccCChhhccCceEEEEeeccccCCCCcccccccccCcccc
Confidence            999899999999999877777666655567777776664322    235688988887766533   3567899999999


Q ss_pred             HHHHHHHHHcCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCC-CCcccHHHHHHHHHHHhhhhCCccceEEEEee
Q 020923          177 VLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNV  255 (319)
Q Consensus       177 ~~a~~~A~~~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~-~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i  255 (319)
                      +++.++|+++|+||+||+|++|+|+|++++|| |++++|+|+|||++ ++|+||||+.|+++|++.   |+  +|+|+++
T Consensus       165 ~~a~~~A~~~g~deal~ld~~g~v~E~s~sNi-f~vk~~~l~TP~~~~~iL~GItR~~vi~~~~~~---gi--~v~e~~i  238 (304)
T d1iyea_         165 LLVGSEARRHGYQEGIALDVNGYISEGAGENL-FEVKDGVLFTPPFTSSALPGITRDAIIKLAKEL---GI--EVREQVL  238 (304)
T ss_dssp             HHHHHHHHHTTCSEEEEECTTSBEEEETTBEE-EEEETTEEEECCGGGTCCCCHHHHHHHHHHHHT---TC--CEEECCC
T ss_pred             chhhhHHHHcCCcceeeecccCeEeecCceeE-EEEeCCEEEEeecccccCCchHHHHHHHHhhhc---cc--ceeeccC
Confidence            99999999999999999999999999999999 66799999999986 899999999999999998   87  9999999


Q ss_pred             CHHHHhccceeeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHHHHHHcCCC
Q 020923          256 TVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPP  311 (319)
Q Consensus       256 ~~~dL~~adevfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~~~i~~~~~  311 (319)
                      +++||.+|||+|+|||++||+||.+||++++++|++||+|++|+++|. +++.|..
T Consensus       239 ~~~~L~~AdEvfltns~~gi~PV~~id~~~~~~g~~Gpit~~L~~~~~-~i~~g~~  293 (304)
T d1iyea_         239 SRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFF-GLFTGET  293 (304)
T ss_dssp             BTTHHHHCSEEEEEETTTEEEEEEEETTEECTTSSCCHHHHHHHHHHH-GGGTTSS
T ss_pred             CHHHHHhhCHHhhhCCCCeEEEEEEECCEEcCCCCcCHHHHHHHHHHH-HHHcCCC
Confidence            999999999999999999999999999999999999999999999997 6777643
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure