Citrus Sinensis ID: 020928

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL
Secondary Structure (PSIPRED)
ccccEEEEEcccccccccccccccEEcccEEccccccEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccEEEEccccccccccEEEEccccEEEcccccccccHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHccccEEEEEccccccccccHHHHHccccEEEEEEEccccHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcHHHHHHHHHcEccccEccccEEcccEEEEEEEEEcccccccccccEEEEccEEcccccHHHHcccHHHccccEEccEccEccccEcEEEEEHHHEEEccccccHHHHHcHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHcccccEEEEcccccccccccHHHHHccccEEEEcccccccHHHHHHHHHccccccHHHEEEEEEHHHHHHHHHHHHHHccccEEEEEEEc
Coil and Loop (DISEMBL)
MPKAVTAYCMQNVVYDQTMRCAnfivkkpmvigHECAGIIEEVgsevkslevgdrvalepgiscghcslckagsynlcpemrffgspptngslahkvvhpaklcyklpdnvsleegamceplsvgvhacrranvgpetnvmimgsGPIGLVTLLAARafgapriiitdvDVQRLSIARNlgadetakvstdiedvdtDVGKIQNamgsgidvsfdcvgfdktmstalnatrpggkvCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRsgkidvkplithrfgftqKEIEDAFEISAQGGNAIKVMFNL
Flexible Loop (DISEMBL)
MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIArnlgadetakvstdiedvDTDVGKIQNAMGSGIDVSFDCVGFDKTMStalnatrpggKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRsgkidvkpLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL
Low Complexity Region (SEG)
MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL
Disordered region (IsUnstruct)
****VTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKV****
Disordered Region (DISOPRED)
*PKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL
Disordered Region (DISEMBL)
MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL
Disordered Region (DISPRO)
MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
Q1PSI9	366	L-idonate 5-dehydrogenase	yes	no	0.974	0.849	0.794	1e-150
Q4R639	357	Sorbitol dehydrogenase OS	N/A	no	0.956	0.854	0.454	9e-74
Q00796	357	Sorbitol dehydrogenase OS	yes	no	0.956	0.854	0.461	2e-73
Q58D31	356	Sorbitol dehydrogenase OS	yes	no	0.956	0.856	0.461	3e-73
Q5R5F3	357	Sorbitol dehydrogenase OS	yes	no	0.956	0.854	0.461	3e-72
P07846	354	Sorbitol dehydrogenase OS	N/A	no	0.952	0.858	0.458	8e-72
Q64442	357	Sorbitol dehydrogenase OS	yes	no	0.956	0.854	0.438	2e-70
P27867	357	Sorbitol dehydrogenase OS	yes	no	0.952	0.851	0.434	3e-70
A1CFY8	358	Probable D-xylulose reduc	N/A	no	0.956	0.851	0.412	4e-63
Q0CWQ2	353	Probable D-xylulose reduc	N/A	no	0.962	0.869	0.413	6e-63

>sp|Q1PSI9|IDND_VITVI L-idonate 5-dehydrogenase OS=Vitis vinifera GN=VIT_16s0100g00290 PE=1 SV=2

 Score =  531 bits (1367), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/311 (79%), Positives = 287/311 (92%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V + +TMRCANFIVKKPMVIGHECAGIIEEVGSEVK+L  GDRVALEPGISC  CS
Sbjct: 56  CGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCS 115

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
           LC+ G YNLC EM+FFGSPPTNGSLA++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HA
Sbjct: 116 LCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHA 175

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRANVGPETNV+IMGSGPIGLVT+LAARAFGAPRI++ DVD QRL+IA++LGAD+  +V
Sbjct: 176 CRRANVGPETNVLIMGSGPIGLVTMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRV 235

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           ST+I+D+D +V KIQ+ M +G+DVSFDCVGF+KTMSTALNATR GGKVCL+GLA++EMTV
Sbjct: 236 STNIQDLDEEVAKIQSTMVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTV 295

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            LTPAAAREVD++GIFRYR+TWPLC+EFLRSGKIDVKPLITHRF F+QK++E+AFE SA+
Sbjct: 296 PLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSAR 355

Query: 309 GGNAIKVMFNL 319
           GGNAIKVMFNL
Sbjct: 356 GGNAIKVMFNL 366

Involved in the catabolism of ascorbate to tartrate. The enzyme has no activity with NADP(+).
Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 8

>sp|Q4R639|DHSO_MACFA Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3

 Score =  277 bits (708), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 141/310 (45%), Positives = 201/310 (64%), Gaps = 5/310 (1%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y +  R  NFIVKKPMV+GHE +G +E+VGS VK L+ GDRVA+EPG+   +  
Sbjct: 45  CGSDVHYWEEGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGVPRENDE 104

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK+G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct: 105 FCKSGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHA 164

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRR  V     V++ G+GPIG+V+LL A+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct: 165 CRRGGVTLGHRVLVCGAGPIGVVSLLVAKAMGAAQVVVTDLSAPRLSKAKEIGADLVLQI 224

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           S   E      GK++  +G   +V+ +C G + ++   + ATR GG + L+GL     T+
Sbjct: 225 SK--ESPQEIAGKVEGLLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTI 282

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            L  AA REVD+ G+FRY +TWP+ I  L S  +++KPL+THRF   +K +E AFE + +
Sbjct: 283 PLLHAAVREVDIKGVFRYCNTWPVAISMLASKSVNIKPLVTHRFPL-EKALE-AFE-TFK 339

Query: 309 GGNAIKVMFN 318
            G  +K+M  
Sbjct: 340 KGLGLKIMLK 349

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q00796|DHSO_HUMAN Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4

 Score =  275 bits (704), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/310 (46%), Positives = 198/310 (63%), Gaps = 5/310 (1%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y +  R  NFIVKKPMV+GHE +G +E+VGS VK L+ GDRVA+EPG    +  
Sbjct: 45  CGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDE 104

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct: 105 FCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHA 164

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRR  V     V++ G+GPIG+VTLL A+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct: 165 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI 224

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           S   E       K++  +G   +V+ +C G + ++   + ATR GG + L+GL     TV
Sbjct: 225 SK--ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTV 282

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPL+THRF   +K +E AFE + +
Sbjct: 283 PLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPL-EKALE-AFE-TFK 339

Query: 309 GGNAIKVMFN 318
            G  +K+M  
Sbjct: 340 KGLGLKIMLK 349

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q58D31|DHSO_BOVIN Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3

 Score =  275 bits (704), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 143/310 (46%), Positives = 198/310 (63%), Gaps = 5/310 (1%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y Q  R  +F+VKKPMV+GHE +G + +VGS V+ L+ GDRVA+EPG       
Sbjct: 44  CGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIEPGAPRETDE 103

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct: 104 FCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHA 163

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRA V     V++ G+GPIGLV+LLAA+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct: 164 CRRAGVTLGNKVLVCGAGPIGLVSLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILQI 223

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           S   E       K++  +GS  +V+ +C G + ++   + AT  GG + L+GL     +V
Sbjct: 224 SN--ESPQEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSV 281

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPL+THRF   +K +E AFE S +
Sbjct: 282 PLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL-EKALE-AFETSKK 339

Query: 309 GGNAIKVMFN 318
            G  +KVM  
Sbjct: 340 -GLGLKVMIK 348

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q5R5F3|DHSO_PONAB Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1

 Score =  271 bits (694), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 143/310 (46%), Positives = 196/310 (63%), Gaps = 5/310 (1%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y +  R  NFIVKKPMV+GHE +G +E+VGS VK L+ GDRVA+EPG    +  
Sbjct: 45  CGSDVHYWEDGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGAPRENDE 104

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGAM EPLSVG+HA
Sbjct: 105 FCKIGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGAMIEPLSVGIHA 164

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRR  V     V++ G+GPIG+VTLL A+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct: 165 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI 224

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           S   E       K++  +G   +V+ +C G   ++   + AT  GG + L+GL     T+
Sbjct: 225 SK--ESPQEIARKVEGLLGCKPEVTIECTGAGASIQAGIYATHSGGTLVLVGLGSEMTTI 282

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPLITHRF   +K +E AFE + +
Sbjct: 283 PLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLITHRFPL-EKALE-AFE-TFK 339

Query: 309 GGNAIKVMFN 318
            G  +K+M  
Sbjct: 340 KGLGLKIMLK 349

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|P07846|DHSO_SHEEP Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1

 Score =  270 bits (691), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 198/310 (63%), Gaps = 6/310 (1%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y Q  R  +F+VKKPMV+GHE +G + +VGS V+ L+ GDRVA++PG       
Sbjct: 43  CGSDVHYWQG-RIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDE 101

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct: 102 FCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHA 161

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRA V     V++ G+GPIGLV LLAA+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct: 162 CRRAGVTLGNKVLVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILEI 221

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           S   E  +    K++  +GS  +V+ +C G + ++   + AT  GG + L+GL     +V
Sbjct: 222 SN--ESPEEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSV 279

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPL+THRF   +K +E AFE S +
Sbjct: 280 PLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL-EKALE-AFETSKK 337

Query: 309 GGNAIKVMFN 318
            G  +KVM  
Sbjct: 338 -GLGLKVMIK 346

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Ovis aries (taxid: 9940)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q64442|DHSO_MOUSE Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3

 Score =  265 bits (678), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 136/310 (43%), Positives = 200/310 (64%), Gaps = 5/310 (1%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y +  R  +F+VKKPMV+GHE AG + +VG  VK L+ GDRVA+EPG+      
Sbjct: 45  CGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGELVKHLKPGDRVAIEPGVPREVDE 104

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK G YNL P + F  +PP +G+L     H A  CYKLPD+V+ EEGA+ EPLSVG++A
Sbjct: 105 YCKIGRYNLTPTIFFCATPPDDGNLCRFYKHNADFCYKLPDSVTFEEGALIEPLSVGIYA 164

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRR +V     V++ G+GP+G+VTLL A+A GA ++++TD+   RL+ A+ +GAD T +V
Sbjct: 165 CRRGSVSLGNKVLVCGAGPVGMVTLLVAKAMGAAQVVVTDLSASRLTKAKEVGADFTIQV 224

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
               E       K+++ +GS  +V+ +C G + ++ T + AT  GG + ++G+    + +
Sbjct: 225 GK--ETPQEIASKVESLLGSKPEVTIECTGAESSVQTGIYATHSGGTLVIVGMGAEMVNL 282

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPL+THRF   +K +E AFE +A+
Sbjct: 283 PLVHAAIREVDIKGVFRYCNTWPMAISMLASKTLNVKPLVTHRFPL-EKAVE-AFE-TAK 339

Query: 309 GGNAIKVMFN 318
            G  +KVM  
Sbjct: 340 KGVGLKVMIK 349

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|P27867|DHSO_RAT Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4

 Score =  265 bits (677), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 135/311 (43%), Positives = 203/311 (65%), Gaps = 7/311 (2%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y +  R  +F+VKKPMV+GHE AG + +VG  VK L+ GDRVA+EPG+      
Sbjct: 45  CGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGPMVKHLKPGDRVAIEPGVPREIDE 104

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK G YNL P + F  +PP +G+L     H A  CYKLPD+V+ EEGA+ EPLSVG++A
Sbjct: 105 FCKIGRYNLTPSIFFCATPPDDGNLCRFYKHSADFCYKLPDSVTFEEGALIEPLSVGIYA 164

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRR +V     V++ G+GPIG+VTLL A+A GA ++++ D+   RL+ A+ +GAD T +V
Sbjct: 165 CRRGSVSLGNKVLVCGAGPIGIVTLLVAKAMGASQVVVIDLSASRLAKAKEVGADFTIQV 224

Query: 189 STDIEDVDTDVG-KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMT 247
           +   ++   D+  K+++ +GS  +V+ +C G + ++ T + AT  GG + ++G+    + 
Sbjct: 225 A---KETPHDIAKKVESVLGSKPEVTIECTGAESSVQTGIYATHSGGTLVVVGMGPEMIN 281

Query: 248 VALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA 307
           + L  AA REVD+ G+FRY +TWP+ +  L S  ++VKPL+THRF   +K +E AFE +A
Sbjct: 282 LPLVHAAVREVDIKGVFRYCNTWPMAVSMLASKTLNVKPLVTHRFPL-EKAVE-AFE-TA 338

Query: 308 QGGNAIKVMFN 318
           + G  +KVM  
Sbjct: 339 KKGLGLKVMIK 349

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|A1CFY8|XYL2_ASPCL Probable D-xylulose reductase A OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=xdhA PE=3 SV=2

 Score =  241 bits (616), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 130/315 (41%), Positives = 188/315 (59%), Gaps = 10/315 (3%)

Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG 65
           T  C  +V Y +     +F+VK PMV+GHE +G++ +VGS V SL+VGDRVA+EPG+ C 
Sbjct: 44  TGICGSDVHYWEHGAIGHFVVKDPMVLGHESSGVVAKVGSAVTSLKVGDRVAMEPGVPCR 103

Query: 66  HCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG 125
            C  CKAG YNLC +M F  +PP +G+LA     P   CYKLP+N+SL+EGA+ EPL V 
Sbjct: 104 RCEPCKAGKYNLCEKMAFAATPPYDGTLAKYYPLPEDFCYKLPENISLQEGALMEPLGVA 163

Query: 126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-- 183
           VH  R+A++ P  +V++ G+GP+GL+    ARAFGA +II  D+   RL  A+   A   
Sbjct: 164 VHITRQASIKPGESVVVFGAGPVGLLCCAVARAFGASKIIAVDIQKTRLDFAKKYAATAI 223

Query: 184 -ETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
            E AKVS      + D  + +N +G G DV  D  G + ++ T ++  RPGG     G+ 
Sbjct: 224 FEPAKVSA---VANADQMREENDLGPGADVVIDASGAEPSVHTGIHVLRPGGTYVQGGMG 280

Query: 243 KTEMTVALTPAAAREVDVIGIFRYRS-TWPLCIEFLRSGKIDVKPLITHRFGFTQKEIED 301
           + E+   +  A  +E+ + G FRY S  + L ++ + SGK++VK LIT    F  +E E 
Sbjct: 281 RNEINFPIMAACTKELTIKGSFRYGSGDYKLAVDLVASGKVNVKDLITGVVEF--QEAEQ 338

Query: 302 AFEISAQGGNAIKVM 316
           AF+   + G  IK +
Sbjct: 339 AFK-EVKAGKGIKTL 352

Xylitol dehydrogenase which catalyzes the conversion of xylitol to D-xylulose. Xylose is a major component of hemicelluloses such as xylan. Most fungi utilize D-xylose via three enzymatic reactions, xylose reductase (XR), xylitol dehydrogenase (XDH), and xylulokinase, to form xylulose 5-phosphate, which enters pentose phosphate pathway.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q0CWQ2|XYL2_ASPTN Probable D-xylulose reductase A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=xdhA PE=3 SV=1

 Score =  241 bits (615), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 131/317 (41%), Positives = 189/317 (59%), Gaps = 10/317 (3%)

Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG 65
           T  C  +V Y +      F+VK PMV+GHE +G+I +VGS V +L+VGDRVA+EPGI C 
Sbjct: 39  TGICGSDVHYWEHGSIGQFVVKDPMVLGHESSGVITKVGSAVTTLKVGDRVAMEPGIPCR 98

Query: 66  HCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG 125
            C  CKAG YNLC EM F  +PP +G+LA     P   CYKLP+ ++L+EGA+ EPL V 
Sbjct: 99  RCEPCKAGKYNLCYEMAFAATPPYDGTLAKYYALPEDFCYKLPEQITLQEGALMEPLGVA 158

Query: 126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-- 183
           VH  R+A V P  +V++ G+GP+GL+    ARAFGA +I+  D+   RL  A+N  A   
Sbjct: 159 VHIVRQAAVTPGQSVVVFGAGPVGLLCCAVARAFGASKIVAVDIQKPRLEFAKNYAATAI 218

Query: 184 -ETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
            E AKV+   E+    +   +N +G G DV+ D  G + ++ T ++  R GG     G+ 
Sbjct: 219 FEPAKVAAQ-ENAARLIA--ENDLGPGADVAIDASGAEPSVHTGIHVLRTGGTYVQGGMG 275

Query: 243 KTEMTVALTPAAAREVDVIGIFRYRS-TWPLCIEFLRSGKIDVKPLITHRFGFTQKEIED 301
           ++EM   +  A  +E++V G FRY S  + L +E + SG+++VK LIT    F  +E E 
Sbjct: 276 RSEMNFPIMAACTKELNVKGSFRYGSGDYKLAVELVASGRVNVKELITGVVKF--EEAEQ 333

Query: 302 AFEISAQGGNAIKVMFN 318
           AF+   + G  IK + +
Sbjct: 334 AFK-EVKAGKGIKTLIS 349

Xylitol dehydrogenase which catalyzes the conversion of xylitol to D-xylulose. Xylose is a major component of hemicelluloses such as xylan. Most fungi utilize D-xylose via three enzymatic reactions, xylose reductase (XR), xylitol dehydrogenase (XDH), and xylulokinase, to form xylulose 5-phosphate, which enters pentose phosphate pathway.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
224122460	359	predicted protein [Populus trichocarpa]	0.974	0.866	0.813	1e-149
297741127	346	unnamed protein product [Vitis vinifera]	0.974	0.898	0.794	1e-148
225469314	366	PREDICTED: L-idonate 5-dehydrogenase [Vi	0.974	0.849	0.794	1e-148
147767778	368	hypothetical protein VITISV_028585 [Viti	0.974	0.845	0.794	1e-148
359490368	366	PREDICTED: L-idonate 5-dehydrogenase-lik	0.974	0.849	0.794	1e-148
297741126	346	unnamed protein product [Vitis vinifera]	0.974	0.898	0.794	1e-148
224120122	364	predicted protein [Populus trichocarpa]	0.974	0.854	0.768	1e-143
350538545	355	sorbitol related enzyme [Solanum lycoper	0.974	0.876	0.765	1e-142
356559880	364	PREDICTED: L-idonate 5-dehydrogenase-lik	0.974	0.854	0.755	1e-141
358345351	362	L-idonate 5-dehydrogenase [Medicago trun	0.974	0.859	0.739	1e-141

>gi|224122460|ref|XP_002318842.1| predicted protein [Populus trichocarpa] gi|222859515|gb|EEE97062.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/311 (81%), Positives = 286/311 (91%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V + +TMRCA+F+VKKPMVIGHECAGIIE+VGSEVKSL VGDRVALEPGISC  C+
Sbjct: 49  CGSDVHHFKTMRCASFVVKKPMVIGHECAGIIEDVGSEVKSLAVGDRVALEPGISCRRCN 108

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
           LCK G YNLCPEM+FFGSPPTNGSLA+KVVHPA LC+KLPDNVSLEEGAMCEPLSVGVHA
Sbjct: 109 LCKEGRYNLCPEMKFFGSPPTNGSLANKVVHPANLCFKLPDNVSLEEGAMCEPLSVGVHA 168

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRA +GPETNV+IMG+GPIGL+TLLA+RAFGAPR++I DVD +RLSIA+NLGADE   V
Sbjct: 169 CRRAQIGPETNVLIMGAGPIGLITLLASRAFGAPRVVIVDVDDRRLSIAKNLGADEIIHV 228

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           ST+I+DVD +V KIQNAMGSGIDVSFDCVG++KTM+TALNAT+ GGKVCLIGLA TEMTV
Sbjct: 229 STNIQDVDEEVIKIQNAMGSGIDVSFDCVGYNKTMTTALNATQSGGKVCLIGLALTEMTV 288

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            LTP+AAREVDVIGIFRYR+TWPLCIEFL++GKIDVKPLITHRF F+Q+E+E AFE SA 
Sbjct: 289 PLTPSAAREVDVIGIFRYRNTWPLCIEFLKTGKIDVKPLITHRFRFSQEEVEQAFETSAG 348

Query: 309 GGNAIKVMFNL 319
           GGNAIKVMFNL
Sbjct: 349 GGNAIKVMFNL 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741127|emb|CBI31858.3| unnamed protein product [Vitis vinifera]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/311 (79%), Positives = 287/311 (92%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V + +TMRCANFIVKKPMVIGHECAGIIEEVGSEVK+L  GDRVALEPGISC  CS
Sbjct: 36  CGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCS 95

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
           LC+ G YNLC EM+FFGSPPTNGSLA++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HA
Sbjct: 96  LCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHA 155

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRANVGPETNV+IMGSGPIGLVT+LAARAFGAPRI++ DVD QRL+IA++LGAD+  +V
Sbjct: 156 CRRANVGPETNVLIMGSGPIGLVTMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRV 215

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           ST+I+D+D +V KIQ+ M +G+DVSFDCVGF+KTMSTALNATR GGKVCL+GLA++EMTV
Sbjct: 216 STNIQDLDEEVAKIQSTMVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTV 275

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            LTPAAAREVD++GIFRYR+TWPLC+EFLRSGKIDVKPLITHRF F+QK++E+AFE SA+
Sbjct: 276 PLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSAR 335

Query: 309 GGNAIKVMFNL 319
           GGNAIKVMFNL
Sbjct: 336 GGNAIKVMFNL 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469314|ref|XP_002269936.1| PREDICTED: L-idonate 5-dehydrogenase [Vitis vinifera] gi|229830633|sp|Q1PSI9.2|IDND_VITVI RecName: Full=L-idonate 5-dehydrogenase

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/311 (79%), Positives = 287/311 (92%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V + +TMRCANFIVKKPMVIGHECAGIIEEVGSEVK+L  GDRVALEPGISC  CS
Sbjct: 56  CGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCS 115

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
           LC+ G YNLC EM+FFGSPPTNGSLA++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HA
Sbjct: 116 LCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHA 175

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRANVGPETNV+IMGSGPIGLVT+LAARAFGAPRI++ DVD QRL+IA++LGAD+  +V
Sbjct: 176 CRRANVGPETNVLIMGSGPIGLVTMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRV 235

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           ST+I+D+D +V KIQ+ M +G+DVSFDCVGF+KTMSTALNATR GGKVCL+GLA++EMTV
Sbjct: 236 STNIQDLDEEVAKIQSTMVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTV 295

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            LTPAAAREVD++GIFRYR+TWPLC+EFLRSGKIDVKPLITHRF F+QK++E+AFE SA+
Sbjct: 296 PLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSAR 355

Query: 309 GGNAIKVMFNL 319
           GGNAIKVMFNL
Sbjct: 356 GGNAIKVMFNL 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767778|emb|CAN73609.1| hypothetical protein VITISV_028585 [Vitis vinifera]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/311 (79%), Positives = 287/311 (92%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V + +TMRCANFIVKKPMVIGHECAGIIEEVGSEVK+L  GDRVALEPGISC  CS
Sbjct: 58  CGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVXGDRVALEPGISCNRCS 117

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
           LC+ G YNLC EM+FFGSPPTNGSLA++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HA
Sbjct: 118 LCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHA 177

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRANVGPETNV+IMGSGPIGLVT+LAARAFGAPRI++ DVD QRL+IA++LGAD+  +V
Sbjct: 178 CRRANVGPETNVLIMGSGPIGLVTMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRV 237

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           ST+I+D+D +V KIQ+ M +G+DVSFDCVGF+KTMSTALNATR GGKVCL+GLA++EMTV
Sbjct: 238 STNIQDLDEEVAKIQSTMVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTV 297

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            LTPAAAREVD++GIFRYR+TWPLC+EFLRSGKIDVKPLITHRF F+QK++E+AFE SA+
Sbjct: 298 PLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSAR 357

Query: 309 GGNAIKVMFNL 319
           GGNAIKVMFNL
Sbjct: 358 GGNAIKVMFNL 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490368|ref|XP_002267662.2| PREDICTED: L-idonate 5-dehydrogenase-like [Vitis vinifera] gi|74273318|gb|ABA01327.1| L-idonate dehydrogenase [Vitis vinifera]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/311 (79%), Positives = 287/311 (92%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V + +TMRCANFIVKKPMVIGHECAGIIEEVGSEVK+L VGDRVALEPGISC  CS
Sbjct: 56  CGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVVGDRVALEPGISCNRCS 115

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
           LC+ G YNLC EM+FFGSPPTNGSLA++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HA
Sbjct: 116 LCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHA 175

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRANVGPETNV+IMGSGPIGLVT+LAARAFGAPRI++ DVD QRL+IA++LGAD+  +V
Sbjct: 176 CRRANVGPETNVLIMGSGPIGLVTMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRV 235

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           ST+I+D+D +V KIQ+ M +G+DVS DCVGF+KTMSTALNATR GGKVCL+GLA++EMTV
Sbjct: 236 STNIQDLDEEVAKIQSTMVTGVDVSLDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTV 295

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            LTPAAAREVD++GIFRYR+TWPLC+EFLRSGKIDVKPLITHRF F+QK++E+AFE SA+
Sbjct: 296 PLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSAR 355

Query: 309 GGNAIKVMFNL 319
           GGNAIKVMFNL
Sbjct: 356 GGNAIKVMFNL 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741126|emb|CBI31857.3| unnamed protein product [Vitis vinifera]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/311 (79%), Positives = 287/311 (92%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V + +TMRCANFIVKKPMVIGHECAGIIEEVGSEVK+L VGDRVALEPGISC  CS
Sbjct: 36  CGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVVGDRVALEPGISCNRCS 95

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
           LC+ G YNLC EM+FFGSPPTNGSLA++VVHP+ LC+KLPDNVSLEEGAMCEPLSVG+HA
Sbjct: 96  LCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHA 155

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRANVGPETNV+IMGSGPIGLVT+LAARAFGAPRI++ DVD QRL+IA++LGAD+  +V
Sbjct: 156 CRRANVGPETNVLIMGSGPIGLVTMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRV 215

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           ST+I+D+D +V KIQ+ M +G+DVS DCVGF+KTMSTALNATR GGKVCL+GLA++EMTV
Sbjct: 216 STNIQDLDEEVAKIQSTMVTGVDVSLDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTV 275

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            LTPAAAREVD++GIFRYR+TWPLC+EFLRSGKIDVKPLITHRF F+QK++E+AFE SA+
Sbjct: 276 PLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSAR 335

Query: 309 GGNAIKVMFNL 319
           GGNAIKVMFNL
Sbjct: 336 GGNAIKVMFNL 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120122|ref|XP_002318247.1| predicted protein [Populus trichocarpa] gi|222858920|gb|EEE96467.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 239/311 (76%), Positives = 277/311 (89%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y +TM+CA+F+VK+PMVIGHECAGIIEEVGSE+KSL  GDRVALEPGISC  C 
Sbjct: 54  CGSDVHYLKTMKCAHFVVKEPMVIGHECAGIIEEVGSEIKSLVPGDRVALEPGISCWRCY 113

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
           LCK G YNLCP+M+FF +PP +GSLA++VVHPA LC+KLPDNVSLEEGAMCEPLSVGVHA
Sbjct: 114 LCKEGRYNLCPDMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHA 173

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRAN+GPETNV++MG+GPIGLVTLLAARAFGAPRI+I DVD  RLS+A++LGADE  KV
Sbjct: 174 CRRANIGPETNVLVMGAGPIGLVTLLAARAFGAPRIVIVDVDDYRLSVAKDLGADEIVKV 233

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           ST+++DVD +V  I  AMG+G+DV+FDC GF+KTMSTAL+ATRPGGKVCLIG+   EMTV
Sbjct: 234 STNLQDVDQEVVLIHQAMGTGVDVTFDCAGFNKTMSTALSATRPGGKVCLIGMGHNEMTV 293

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            LTPAAAREVDVIG+FRY++TWPLCIEFL SGKIDVKPLITHRFGF+QKE+E+AFE SA 
Sbjct: 294 PLTPAAAREVDVIGVFRYKNTWPLCIEFLSSGKIDVKPLITHRFGFSQKEVEEAFETSAS 353

Query: 309 GGNAIKVMFNL 319
           G  AIKVMFNL
Sbjct: 354 GSTAIKVMFNL 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538545|ref|NP_001234092.1| sorbitol related enzyme [Solanum lycopersicum] gi|78183416|dbj|BAE47038.1| sorbitol related enzyme [Solanum lycopersicum]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 238/311 (76%), Positives = 277/311 (89%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y +TMRCA+F+VK+PMVIGHECAGIIEEVG EVK+L  GDRVALEPGISC  C+
Sbjct: 45  CGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGGEVKTLVPGDRVALEPGISCWRCN 104

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
           LCK G YNLCPEM+FF +PP +GSLA++VVHPA LC+KLPD++SLEEGAMCEPLSVGVHA
Sbjct: 105 LCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDDISLEEGAMCEPLSVGVHA 164

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRANVGPETN++++G+GPIGLVTLLAARAFGAPRI+I DVD  RLS+A+ LGAD+  KV
Sbjct: 165 CRRANVGPETNILVLGAGPIGLVTLLAARAFGAPRIVIVDVDDYRLSVAKKLGADDIVKV 224

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           S +I+DV TD+  IQ AMG GID SFDC GF+KTMSTAL ATRPGGKVCL+G+   EMTV
Sbjct: 225 SINIQDVATDIENIQKAMGGGIDASFDCAGFNKTMSTALGATRPGGKVCLVGMGHHEMTV 284

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            LTPAAAREVDVIGIFRY++TWPLC+EFLRSGKIDVKPLITHRFGF+Q+E+E+AFE SA+
Sbjct: 285 PLTPAAAREVDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQEEVEEAFETSAR 344

Query: 309 GGNAIKVMFNL 319
           GG+AIKVMFNL
Sbjct: 345 GGDAIKVMFNL 355

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559880|ref|XP_003548224.1| PREDICTED: L-idonate 5-dehydrogenase-like [Glycine max]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/311 (75%), Positives = 280/311 (90%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y +T+RCA+FIVK+PMVIGHECAGIIEEVGS+VKSL  GDRVA+EPGISC HC+
Sbjct: 54  CGSDVHYLKTLRCAHFIVKEPMVIGHECAGIIEEVGSQVKSLVPGDRVAIEPGISCWHCN 113

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK G YNLC +M+FF +PP +GSLA+++VHPA LC+KLPDNVSLEEGAMCEPLSVGVHA
Sbjct: 114 HCKHGRYNLCDDMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGVHA 173

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRAN+GPETNV+IMG+GPIGLVT+LAARAFGAP+ +I DVD  RLS+A++LGAD+  KV
Sbjct: 174 CRRANIGPETNVLIMGAGPIGLVTMLAARAFGAPKTVIVDVDDHRLSVAKSLGADDIIKV 233

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           ST+I+DV  +V +IQ  MG+GIDV+FDC GFDKTMSTAL+AT+PGGKVCL+G+  +EMTV
Sbjct: 234 STNIKDVAEEVVQIQKVMGAGIDVTFDCAGFDKTMSTALSATQPGGKVCLVGMGHSEMTV 293

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            LTPAAAREVDV+G+FRY +TWPLC+EFLRSGKIDVKPLITHRFGF+QKE+E+AFE SA+
Sbjct: 294 PLTPAAAREVDVVGVFRYMNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSAR 353

Query: 309 GGNAIKVMFNL 319
           GGNAIKVMFNL
Sbjct: 354 GGNAIKVMFNL 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345351|ref|XP_003636744.1| L-idonate 5-dehydrogenase [Medicago truncatula] gi|355502679|gb|AES83882.1| L-idonate 5-dehydrogenase [Medicago truncatula]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 230/311 (73%), Positives = 280/311 (90%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y +T+RCA+FIVK+PMVIGHECAGIIEEVGS+VK+L  GDRVA+EPGISC  C 
Sbjct: 52  CGSDVHYLKTLRCADFIVKEPMVIGHECAGIIEEVGSQVKTLVPGDRVAIEPGISCWRCD 111

Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK G YNLCP+M+FF +PP +GSLA+++VHPA LC+KLP+NVSLEEGAMCEPLSVGVHA
Sbjct: 112 HCKLGRYNLCPDMKFFATPPVHGSLANQIVHPADLCFKLPENVSLEEGAMCEPLSVGVHA 171

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRAN+GPETNV+IMG+GPIGLVT+L+ARAFGAPRI++ DVD  RLS+A++LGAD+  KV
Sbjct: 172 CRRANIGPETNVLIMGAGPIGLVTMLSARAFGAPRIVVVDVDDHRLSVAKSLGADDIVKV 231

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           ST+I+DV  +V +I N +G+G+DV+FDC GF+KTM+TAL AT+PGGKVCL+G+  +EMTV
Sbjct: 232 STNIQDVAEEVKQIHNVLGAGVDVTFDCAGFNKTMTTALTATQPGGKVCLVGMGHSEMTV 291

Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            LTPAAAREVDV+GIFRY++TWPLC+EFLRSGKIDVKPLITHRFGF+QKE+E+AFE SA+
Sbjct: 292 PLTPAAAREVDVVGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSAR 351

Query: 309 GGNAIKVMFNL 319
           GGNAIKVMFNL
Sbjct: 352 GGNAIKVMFNL 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
TAIR|locus:2173093	364	AT5G51970 [Arabidopsis thalian	0.990	0.868	0.741	1.7e-128
FB|FBgn0022359	360	Sodh-2 "Sorbitol dehydrogenase	0.965	0.855	0.467	4.6e-73
FB|FBgn0024289	360	Sodh-1 "Sorbitol dehydrogenase	0.965	0.855	0.474	1.6e-72
UNIPROTKB|Q4R639	357	SORD "Sorbitol dehydrogenase"	0.949	0.848	0.457	1.3e-70
UNIPROTKB|H0YLA4	336	SORD "Sorbitol dehydrogenase"	0.949	0.901	0.464	4.3e-70
UNIPROTKB|Q00796	357	SORD "Sorbitol dehydrogenase"	0.949	0.848	0.464	4.3e-70
UNIPROTKB|F1PXG0	356	SORD "Uncharacterized protein"	0.949	0.851	0.464	5.5e-70
WB|WBGene00011003	347	R04B5.5 [Caenorhabditis elegan	0.946	0.870	0.448	7e-70
UNIPROTKB|Q58D31	356	SORD "Sorbitol dehydrogenase"	0.946	0.848	0.472	1.1e-69
UNIPROTKB|Q5R5F3	357	SORD "Sorbitol dehydrogenase"	0.949	0.848	0.464	3e-69

TAIR|locus:2173093 AT5G51970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 235/317 (74%), Positives = 276/317 (87%)

Query:     3 KAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI 62
             KAV   C  +V Y +TMRCA+F+VK+PMVIGHECAGIIEEVG EVK L VGDRVALEPGI
Sbjct:    49 KAV-GICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGEEVKHLVVGDRVALEPGI 107

Query:    63 SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPL 122
             SC  C+LC+ G YNLCPEM+FF +PP +GSLA++VVHPA LC+KLP+NVSLEEGAMCEPL
Sbjct:   108 SCWRCNLCREGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPL 167

Query:   123 SVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
             SVGVHACRRA VGPETNV++MG+GPIGLVT+LAARAF  PRI+I DVD  RL++A+ LGA
Sbjct:   168 SVGVHACRRAEVGPETNVLVMGAGPIGLVTMLAARAFSVPRIVIVDVDENRLAVAKQLGA 227

Query:   183 DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
             DE  +V+T++EDV ++V +IQ AMGS IDV+FDC GF+KTMSTAL ATR GGKVCL+G+ 
Sbjct:   228 DEIVQVTTNLEDVGSEVEQIQKAMGSNIDVTFDCAGFNKTMSTALAATRCGGKVCLVGMG 287

Query:   243 KTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDA 302
                MTV LTPAAAREVDV+G+FRY++TWPLC+EFL SGKIDVKPLITHRFGF+QKE+EDA
Sbjct:   288 HGIMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLTSGKIDVKPLITHRFGFSQKEVEDA 347

Query:   303 FEISAQGGNAIKVMFNL 319
             FE SA+G NAIKVMFNL
Sbjct:   348 FETSARGSNAIKVMFNL 364

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

FB|FBgn0022359 Sodh-2 "Sorbitol dehydrogenase-2" [Drosophila melanogaster (taxid:7227)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 146/312 (46%), Positives = 205/312 (65%)

Query:     9 CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
             C  +V Y    R  +F++ KPM+IGHE AG++ ++G +V +L+VGDRVA+EPG+ C +C 
Sbjct:    41 CGSDVHYLAHGRIGDFVLTKPMIIGHEAAGVVAKLGKKVTTLKVGDRVAIEPGVPCRYCD 100

Query:    69 LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
              CK G YNLC +M F  +PP +G+L     H A  C+KLPD+VS+EEGA+ EPLSVGVHA
Sbjct:   101 HCKQGRYNLCADMVFCATPPYDGNLTRYYKHAADFCFKLPDHVSMEEGALLEPLSVGVHA 160

Query:   129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
             CRRA VG  + V+I+G+GPIGLVTLLAA+A GA  I+ITD+  QRL +A+ LGA  T  +
Sbjct:   161 CRRAGVGLGSKVLILGAGPIGLVTLLAAQAMGASEILITDLVQQRLDVAKELGATHTLLL 220

Query:   189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
               D +  +  V  +   M    D S DC G + +   A+ ATR GG V ++G+   E+ +
Sbjct:   221 QRD-QSAEETVKVVHQTMSEVPDKSIDCCGAESSARLAIFATRSGGVVVVVGMGAPEVKL 279

Query:   249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
              L  A ARE+D+ G+FRY + +   +  + SGK++VK L+TH +  T  E  +AFE S +
Sbjct:   280 PLINALAREIDIRGVFRYCNDYSAALALVASGKVNVKRLVTHHYDIT--ETAEAFETSRR 337

Query:   309 G-GNAIKVMFNL 319
             G G AIKVM ++
Sbjct:   338 GTGGAIKVMIHV 349

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISS;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0024289 Sodh-1 "Sorbitol dehydrogenase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 148/312 (47%), Positives = 204/312 (65%)

Query:     9 CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
             C  +V Y    R  +F++ KPM+IGHE AG++ ++G +V +L+VGDRVA+EPG+ C  C 
Sbjct:    41 CGSDVHYLAHGRIGDFVLTKPMIIGHESAGVVAKLGKKVTTLKVGDRVAIEPGVPCRKCD 100

Query:    69 LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
              CK G YNLCP M F  +PP +G+L     H A  C+KLPD+V++EEGA+ EPLSVGVHA
Sbjct:   101 HCKQGKYNLCPGMVFCATPPYDGNLTRYYKHAADFCFKLPDHVTMEEGALLEPLSVGVHA 160

Query:   129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
             C+RA V   + V+I+G+GPIGLVTL+AA+A GA  I+ITD+  QRL +A+ LGA  T  +
Sbjct:   161 CKRAEVTLGSKVLILGAGPIGLVTLMAAQAMGASEILITDLVQQRLDVAKELGATHTLLL 220

Query:   189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
               D    +T V  +Q  MG   D S DC G + +   A+ ATR GG V ++G+   E+ +
Sbjct:   221 KRDQTAEETAV-LVQKTMGGQPDKSIDCCGAESSARLAIFATRSGGIVVVVGMGAAEIKL 279

Query:   249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
              L  A AREVD+ G+FRY + +   +  + SGK++VK L+TH F    KE   AFE S +
Sbjct:   280 PLINALAREVDIRGVFRYCNDYAAALALVASGKVNVKRLVTHHFDI--KETAKAFETSRK 337

Query:   309 G-GNAIKVMFNL 319
             G G AIKVM ++
Sbjct:   338 GLGGAIKVMIHV 349

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=NAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q4R639 SORD "Sorbitol dehydrogenase" [Macaca fascicularis (taxid:9541)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 141/308 (45%), Positives = 201/308 (65%)

Query:     9 CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
             C  +V Y +  R  NFIVKKPMV+GHE +G +E+VGS VK L+ GDRVA+EPG+   +  
Sbjct:    45 CGSDVHYWEEGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGVPRENDE 104

Query:    69 LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
              CK+G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct:   105 FCKSGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHA 164

Query:   129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
             CRR  V     V++ G+GPIG+V+LL A+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct:   165 CRRGGVTLGHRVLVCGAGPIGVVSLLVAKAMGAAQVVVTDLSAPRLSKAKEIGADLVLQI 224

Query:   189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
             S   E      GK++  +G   +V+ +C G + ++   + ATR GG + L+GL     T+
Sbjct:   225 SK--ESPQEIAGKVEGLLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTI 282

Query:   249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
              L  AA REVD+ G+FRY +TWP+ I  L S  +++KPL+THRF   +K +E AFE + +
Sbjct:   283 PLLHAAVREVDIKGVFRYCNTWPVAISMLASKSVNIKPLVTHRFPL-EKALE-AFE-TFK 339

Query:   309 GGNAIKVM 316
              G  +K+M
Sbjct:   340 KGLGLKIM 347

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

UNIPROTKB|H0YLA4 SORD "Sorbitol dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 143/308 (46%), Positives = 198/308 (64%)

Query:     9 CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
             C  +V Y +  R  NFIVKKPMV+GHE +G +E+VGS VK L+ GDRVA+EPG    +  
Sbjct:    24 CGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDE 83

Query:    69 LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
              CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct:    84 FCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHA 143

Query:   129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
             CRR  V     V++ G+GPIG+VTLL A+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct:   144 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI 203

Query:   189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
             S   E       K++  +G   +V+ +C G + ++   + ATR GG + L+GL     TV
Sbjct:   204 SK--ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTV 261

Query:   249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
              L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPL+THRF   +K +E AFE + +
Sbjct:   262 PLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPL-EKALE-AFE-TFK 318

Query:   309 GGNAIKVM 316
              G  +K+M
Sbjct:   319 KGLGLKIM 326

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q00796 SORD "Sorbitol dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 143/308 (46%), Positives = 198/308 (64%)

Query:     9 CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
             C  +V Y +  R  NFIVKKPMV+GHE +G +E+VGS VK L+ GDRVA+EPG    +  
Sbjct:    45 CGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDE 104

Query:    69 LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
              CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct:   105 FCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHA 164

Query:   129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
             CRR  V     V++ G+GPIG+VTLL A+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct:   165 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI 224

Query:   189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
             S   E       K++  +G   +V+ +C G + ++   + ATR GG + L+GL     TV
Sbjct:   225 SK--ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTV 282

Query:   249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
              L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPL+THRF   +K +E AFE + +
Sbjct:   283 PLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPL-EKALE-AFE-TFK 339

Query:   309 GGNAIKVM 316
              G  +K+M
Sbjct:   340 KGLGLKIM 347

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISS;IDA

GO:0008270 "zinc ion binding" evidence=ISS;IDA

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0006062 "sorbitol catabolic process" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0046370 "fructose biosynthetic process" evidence=IDA

GO:0051160 "L-xylitol catabolic process" evidence=IDA

GO:0051164 "L-xylitol metabolic process" evidence=IDA

GO:0005615 "extracellular space" evidence=TAS

GO:0030317 "sperm motility" evidence=ISS;NAS

GO:0031514 "motile cilium" evidence=ISS

UNIPROTKB|F1PXG0 SORD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 143/308 (46%), Positives = 199/308 (64%)

Query:     9 CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
             C  +V Y Q  R  +FIVKKPMV+GHE +G + +VGS VK L+ GDRVA+EPG       
Sbjct:    44 CGSDVHYWQHGRIGDFIVKKPMVLGHEASGTVVKVGSLVKHLKSGDRVAIEPGALREMDE 103

Query:    69 LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
              CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct:   104 FCKIGRYNLSPSIFFCATPPDDGNLCQFYKHNADFCYKLPDNVTYEEGALIEPLSVGIHA 163

Query:   129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
             CRRA +     V++ G+GPIGLVTL+ A+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct:   164 CRRAGITLGNKVLVCGAGPIGLVTLIVAKAMGAGQVLVTDLSASRLSKAKEVGADIVLQI 223

Query:   189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
             S   E       K+++ +G   + + +C G +  + + + ATR GG + L+GL     TV
Sbjct:   224 SK--ESPKEIASKVEDMLGCKPEATIECTGVESAIQSGIYATRAGGTLVLVGLGSEMTTV 281

Query:   249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
              LT A+ REVD+ G+FRY +TWP+ I  L S  ++VKPL+THRF   +K +E AFE +A+
Sbjct:   282 PLTHASTREVDIKGVFRYCNTWPMAISMLASKAVNVKPLVTHRFPL-EKALE-AFE-TAR 338

Query:   309 GGNAIKVM 316
              G  +KVM
Sbjct:   339 KGTGLKVM 346

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

WB|WBGene00011003 R04B5.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 138/308 (44%), Positives = 202/308 (65%)

Query:     9 CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
             C  +V Y        F+VK+PM++GHE +GI+ EVG+EVK L+VGDR+A+EPG+ C  C 
Sbjct:    41 CGSDVHYWTHGAIGPFVVKEPMIVGHETSGIVSEVGNEVKHLKVGDRIAMEPGLPCKLCE 100

Query:    69 LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
              CK G YNLCPEMRFF +PP +G+L+  VVH A  C+KLPDN+S E+GA+ EPLSV +HA
Sbjct:   101 HCKTGRYNLCPEMRFFATPPVHGTLSRFVVHDADFCFKLPDNLSFEDGALIEPLSVAIHA 160

Query:   129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
             CRR NV     V+++G+GPIG++ L+ A+A GA +++ITD+D  RL++A+ LGAD T  V
Sbjct:   161 CRRGNVQMGHRVLVLGAGPIGVLNLITAKAVGAGKVVITDLDDGRLALAKKLGADATINV 220

Query:   189 STDIEDVDTDVGKIQNAMGSGI-DVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMT 247
                 + +D    +I  A+G    DV  +C G   ++ TA+  T+ GG + L+GL    + 
Sbjct:   221 KG--KSLDAVKSEIITALGDQQPDVCIECTGAQPSIETAITTTKSGGVIVLVGLGADRVE 278

Query:   248 VALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA 307
             + +  +A REVD+ GIFRY + +P  IE + SGK+++  L   R  +  +E ++AF+   
Sbjct:   279 IPIIESATREVDMRGIFRYVNCYPTAIELISSGKLNLSGLT--RAHYKLEETQEAFK-RT 335

Query:   308 QGGNAIKV 315
             Q  + IKV
Sbjct:   336 QKADVIKV 343

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

UNIPROTKB|Q58D31 SORD "Sorbitol dehydrogenase" [Bos taurus (taxid:9913)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 146/309 (47%), Positives = 201/309 (65%)

Query:     9 CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
             C  +V Y Q  R  +F+VKKPMV+GHE +G + +VGS V+ L+ GDRVA+EPG       
Sbjct:    44 CGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIEPGAPRETDE 103

Query:    69 LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
              CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct:   104 FCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHA 163

Query:   129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
             CRRA V     V++ G+GPIGLV+LLAA+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct:   164 CRRAGVTLGNKVLVCGAGPIGLVSLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILQI 223

Query:   189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMT- 247
             S   E       K++  +GS  +V+ +C G + ++   + AT  GG + L+GL  +EMT 
Sbjct:   224 SN--ESPQEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLG-SEMTS 280

Query:   248 VALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA 307
             V L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPL+THRF   +K +E AFE S 
Sbjct:   281 VPLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL-EKALE-AFETSK 338

Query:   308 QGGNAIKVM 316
             +G   +KVM
Sbjct:   339 KG-LGLKVM 346

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5R5F3 SORD "Sorbitol dehydrogenase" [Pongo abelii (taxid:9601)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 143/308 (46%), Positives = 196/308 (63%)

Query:     9 CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
             C  +V Y +  R  NFIVKKPMV+GHE +G +E+VGS VK L+ GDRVA+EPG    +  
Sbjct:    45 CGSDVHYWEDGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGAPRENDE 104

Query:    69 LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
              CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGAM EPLSVG+HA
Sbjct:   105 FCKIGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGAMIEPLSVGIHA 164

Query:   129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
             CRR  V     V++ G+GPIG+VTLL A+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct:   165 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI 224

Query:   189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
             S   E       K++  +G   +V+ +C G   ++   + AT  GG + L+GL     T+
Sbjct:   225 SK--ESPQEIARKVEGLLGCKPEVTIECTGAGASIQAGIYATHSGGTLVLVGLGSEMTTI 282

Query:   249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
              L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPLITHRF   +K +E AFE + +
Sbjct:   283 PLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLITHRFPL-EKALE-AFE-TFK 339

Query:   309 GGNAIKVM 316
              G  +K+M
Sbjct:   340 KGLGLKIM 347

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B2JYP4	TDH_YERPB	1, ., 1, ., 1, ., 1, 0, 3	0.3144	0.9467	0.8856	yes	no
A8GLC6	TDH_SERP5	1, ., 1, ., 1, ., 1, 0, 3	0.3216	0.9310	0.8709	yes	no
Q64442	DHSO_MOUSE	1, ., 1, ., 1, ., 1, 4	0.4387	0.9561	0.8543	yes	no
A2QY54	XYL2_ASPNC	1, ., 1, ., 1, ., 9	0.3942	0.9655	0.8603	yes	no
Q5ARL6	XYL2_EMENI	1, ., 1, ., 1, ., 9	0.4070	0.9655	0.8579	yes	no
A6WUG6	TDH_SHEB8	1, ., 1, ., 1, ., 1, 0, 3	0.3130	0.9341	0.8739	yes	no
P27867	DHSO_RAT	1, ., 1, ., 1, ., 1, 4	0.4340	0.9529	0.8515	yes	no
A1JHX8	TDH_YERE8	1, ., 1, ., 1, ., 1, 0, 3	0.3113	0.9467	0.8856	yes	no
Q92MT4	XYLD_RHIME	1, ., 1, ., 1, ., 9	0.3754	0.8746	0.8063	yes	no
Q58D31	DHSO_BOVIN	1, ., 1, ., 1, ., 1, 4	0.4612	0.9561	0.8567	yes	no
A6W1W3	TDH_MARMS	1, ., 1, ., 1, ., 1, 0, 3	0.3257	0.9216	0.8621	yes	no
Q07786	DHSO2_YEAST	1, ., 1, ., 1, ., 1, 4	0.3860	0.9655	0.8627	yes	no
Q48AM4	TDH_COLP3	1, ., 1, ., 1, ., 1, 0, 3	0.3194	0.9341	0.8739	yes	no
Q00796	DHSO_HUMAN	1, ., 1, ., 1, ., 1, 4	0.4612	0.9561	0.8543	yes	no
B1JQW2	TDH_YERPY	1, ., 1, ., 1, ., 1, 0, 3	0.3144	0.9467	0.8856	yes	no
Q8U259	TDH_PYRFU	1, ., 1, ., 1, ., 1, 0, 3	0.3270	0.9561	0.8764	yes	no
Q5GN51	XYL2_ASPNG	1, ., 1, ., 1, ., 9	0.3942	0.9655	0.8603	yes	no
P36624	DHSO_SCHPO	1, ., 1, ., 1, ., 1, 4	0.3598	0.9592	0.85	yes	no
Q98D10	XYLD_RHILO	1, ., 1, ., 1, ., 9	0.3675	0.9216	0.8448	yes	no
Q1PSI9	IDND_VITVI	1, ., 1, ., 1, ., n, 8	0.7942	0.9749	0.8497	yes	no
B1KL24	TDH_SHEWM	1, ., 1, ., 1, ., 1, 0, 3	0.3113	0.9467	0.8856	yes	no
P35497	DHSO1_YEAST	1, ., 1, ., 1, ., 1, 4	0.3829	0.9655	0.8627	yes	no
A7FCU5	TDH_YERP3	1, ., 1, ., 1, ., 1, 0, 3	0.3144	0.9467	0.8856	yes	no
Q66GC5	TDH_YERPS	1, ., 1, ., 1, ., 1, 0, 3	0.3144	0.9467	0.8856	yes	no
P22144	XYL2_PICST	1, ., 1, ., 1, ., 9	0.3343	0.9529	0.8374	yes	no
Q06004	DHSO_BACSU	1, ., 1, ., 1, ., 1, 4	0.4032	0.9467	0.8555	yes	no
Q3IHW0	TDH_PSEHT	1, ., 1, ., 1, ., 1, 0, 3	0.3215	0.9404	0.8797	yes	no
Q5R5F3	DHSO_PONAB	1, ., 1, ., 1, ., 1, 4	0.4612	0.9561	0.8543	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.976
4th Layer	1.1.1.n8	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XII.1035.1	L-iditol 2-dehydrogenase (EC-1.1.1.14) (348 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_XVIII2895	xylose isomerase (EC-5.3.1.5) (477 aa)						•	•		0.919
	gw1.125.171.1	fructokinase (EC-2.7.1.4) (320 aa)	•					•			0.902
	eugene3.00070163	fructokinase (EC-2.7.1.4) (329 aa)	•					•			0.901
	gw1.II.2365.1	fructokinase (EC-2.7.1.4) (337 aa)						•			0.899
	gw1.8434.3.1	annotation not avaliable (125 aa)						•			0.899
	fgenesh4_pm.C_LG_IV000247	fructokinase (EC-2.7.1.4) (351 aa)						•			0.899
	fgenesh4_pm.C_LG_I000617	hexokinase (508 aa)						•			0.899
	fgenesh4_pg.C_LG_VII001238	hexokinase (EC-2.7.1.2) (502 aa)						•			0.899
	fgenesh4_pg.C_LG_IX001086	hexokinase (508 aa)						•			0.899
	eugene3.00151131	SubName- Full=Putative uncharacterized protein; (350 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	319
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	0.0
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	1e-155
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	4e-87
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	3e-83
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	2e-78
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	6e-76
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	2e-75
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	2e-73
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	6e-69
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	2e-62
cd05281	341	cd05281, TDH, Threonine dehydrogenase	2e-59
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	1e-58
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	7e-57
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	8e-56
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	3e-54
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	3e-53
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	3e-51
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	7e-50
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	8e-49
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	2e-47
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	1e-44
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	1e-44
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	3e-44
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	5e-44
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	4e-43
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	4e-43
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	4e-43
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	5e-41
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	1e-40
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	6e-40
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	2e-38
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	3e-38
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	4e-38
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	7e-38
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	7e-38
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	2e-37
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	5e-37
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	1e-36
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	6e-36
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	8e-36
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	3e-35
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	5e-35
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	2e-34
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	2e-34
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	7e-34
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	6e-31
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	2e-30
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	3e-30
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	4e-30
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	5e-30
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	7e-30
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	9e-30
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	2e-27
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	2e-25
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	3e-25
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	1e-24
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-24
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	6e-24
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	7e-24
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	1e-23
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	4e-23
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	9e-23
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	3e-22
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	3e-22
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	4e-22
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	7e-22
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	6e-21
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	1e-20
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-20
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	1e-20
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	2e-20
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	3e-19
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	1e-18
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	1e-18
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	2e-17
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	4e-17
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	6e-17
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	7e-17
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	2e-16
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	2e-16
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	4e-16
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	6e-16
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	6e-15
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	1e-14
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	9e-14
smart00829	287	smart00829, PKS_ER, Enoylreductase	4e-13
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	7e-13
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	2e-12
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	4e-12
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	2e-11
cd08237	341	cd08237, ribitol-5-phosphate_DH, ribitol-5-phospha	3e-11
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	1e-10
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	6e-10
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	6e-10
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	7e-10
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	2e-09
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	4e-09
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	6e-09
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	4e-07
pfam13602	129	pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenas	4e-07
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	6e-07
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	2e-06
TIGR01202	308	TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacter	4e-06
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	1e-05
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	2e-05
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	2e-05
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	1e-04
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	0.003

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score =  595 bits (1537), Expect = 0.0
 Identities = 247/317 (77%), Positives = 285/317 (89%), Gaps = 1/317 (0%)

Query: 3   KAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI 62
           KAV   C  +V Y +TMRCA+F+VK+PMVIGHECAGIIEEVGSEVK L VGDRVALEPGI
Sbjct: 49  KAV-GICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGI 107

Query: 63  SCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPL 122
           SC  C+LCK G YNLCPEM+FF +PP +GSLA++VVHPA LC+KLP+NVSLEEGAMCEPL
Sbjct: 108 SCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPL 167

Query: 123 SVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
           SVGVHACRRAN+GPETNV++MG+GPIGLVT+LAARAFGAPRI+I DVD +RLS+A+ LGA
Sbjct: 168 SVGVHACRRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGA 227

Query: 183 DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
           DE   VST+IEDV+++V +IQ AMG GIDVSFDCVGF+KTMSTAL ATR GGKVCL+G+ 
Sbjct: 228 DEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMG 287

Query: 243 KTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDA 302
             EMTV LTPAAAREVDV+G+FRYR+TWPLC+EFLRSGKIDVKPLITHRFGF+QKE+E+A
Sbjct: 288 HNEMTVPLTPAAAREVDVVGVFRYRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEA 347

Query: 303 FEISAQGGNAIKVMFNL 319
           FE SA+GGNAIKVMFNL
Sbjct: 348 FETSARGGNAIKVMFNL 364

Length = 364

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  438 bits (1128), Expect = e-155
 Identities = 160/306 (52%), Positives = 210/306 (68%), Gaps = 6/306 (1%)

Query: 15  YDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGS 74
           Y +  R  +F+VK+PMV+GHE AG +  VGS V  L+VGDRVA+EPG+ C  C  CK+G 
Sbjct: 41  YYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGR 100

Query: 75  YNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV 134
           YNLCP+MRF  +PP +G+L   V HPA  C+KLPDNVSLEEGA+ EPLSVGVHACRRA V
Sbjct: 101 YNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGVHACRRAGV 160

Query: 135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIED 194
            P   V++ G+GPIGL+T   A+AFGA ++++TD+D  RL  A+ LGA  T  V T  ED
Sbjct: 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT--ED 218

Query: 195 VDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPA 253
                 KI   +G  G DV  +C G +  + TA+ ATRPGG V L+G+ K E+T+ L+ A
Sbjct: 219 TPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAA 278

Query: 254 AAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGN-A 312
           + RE+D+ G+FRY +T+P  IE L SGK+DVKPLITHRF    ++  +AFE +A+G    
Sbjct: 279 SLREIDIRGVFRYANTYPTAIELLASGKVDVKPLITHRFPL--EDAVEAFETAAKGKKGV 336

Query: 313 IKVMFN 318
           IKV+  
Sbjct: 337 IKVVIE 342

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score =  264 bits (677), Expect = 4e-87
 Identities = 109/298 (36%), Positives = 157/298 (52%), Gaps = 13/298 (4%)

Query: 23  NFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR 82
              +++PMV+GHE +G++E VG  V  L  G RVA+ P   CG C  C+AG  NLC  MR
Sbjct: 48  TVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMR 107

Query: 83  FFGS----PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPET 138
           F GS    P   G     +V  A  C  LPD +SL   A+ EPL+V +HA  RA      
Sbjct: 108 FLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAALAEPLAVALHAVNRAGDLAGK 167

Query: 139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD 198
            V++ G+GPIG + + AAR  GA  I+ TD+    L++AR +GADET  ++ D       
Sbjct: 168 RVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYA- 226

Query: 199 VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREV 258
                 A     DV F+  G    +++AL   RPGG V  +G+    + + L    A+E+
Sbjct: 227 ------ADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKEL 280

Query: 259 DVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM 316
           D+ G FR+   +   +  L +G+IDV+PLIT  F     E  +AF ++A    ++KV 
Sbjct: 281 DLRGSFRFDDEFAEAVRLLAAGRIDVRPLITAVFPLE--EAAEAFALAADRTRSVKVQ 336

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  254 bits (652), Expect = 3e-83
 Identities = 114/303 (37%), Positives = 164/303 (54%), Gaps = 26/303 (8%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+V+GHE +G +EEVGS V  L VGDRVA+ P + CG C  CK G Y+LC    + GS  
Sbjct: 53  PLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSR- 111

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPI 148
            +G+ A  V  PA+   K+PD+V  EE AM EP +V +HA R A +     V+++G+G I
Sbjct: 112 RDGAFAEYVSVPARNLIKIPDHVDYEEAAMIEPAAVALHAVRLAGITLGDTVVVIGAGTI 171

Query: 149 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM-G 207
           GL+ +   +  GA R+I  D+D ++L++AR LGAD+T      I   + DV K++    G
Sbjct: 172 GLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDT------INPKEEDVEKVRELTEG 225

Query: 208 SGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAA------REVDVI 261
            G D+  +  G   T+  AL   RPGGKV L+G+   ++T       A      +E+ + 
Sbjct: 226 RGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVT---LSEEAFEKILRKELTIQ 282

Query: 262 GIFRYRST------WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNA-IK 314
           G +   S       W   ++ L SGKI V+PLITHR     ++   AFE  A       K
Sbjct: 283 GSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPL--EDGPAAFERLADREEFSGK 340

Query: 315 VMF 317
           V+ 
Sbjct: 341 VLL 343

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  242 bits (621), Expect = 2e-78
 Identities = 113/277 (40%), Positives = 155/277 (55%), Gaps = 6/277 (2%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+ +GHE +G++ EVGS V   +VGDRV +EP I CG C  CK G YNLC  + F G   
Sbjct: 65  PVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGG 124

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPI 148
             G  A  VV PA   +KLPDNV LEE A+ EPL+V  HA RR+   P    +++G+GPI
Sbjct: 125 GGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWHAVRRSGFKPGDTALVLGAGPI 184

Query: 149 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS 208
           GL+T+LA +A GA +II+++    R  +A  LGA      +    DV  +V K+    G 
Sbjct: 185 GLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTE--VDVVAEVRKLTG--GG 240

Query: 209 GIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-R 267
           G+DVSFDC G   T+ TA++A RP G    + + +  ++        +E  + G   Y R
Sbjct: 241 GVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTR 300

Query: 268 STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
             +   I+ L SGKID +PLIT R       +E  FE
Sbjct: 301 EDFEEVIDLLASGKIDAEPLITSRIPLEDI-VEKGFE 336

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  235 bits (602), Expect = 6e-76
 Identities = 110/297 (37%), Positives = 161/297 (54%), Gaps = 12/297 (4%)

Query: 24  FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF 83
           F    P+V GHE AG++  VGS+V   +VGDRVA++P I CG C  C+ G  NLC  +  
Sbjct: 48  FGAAPPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTA 107

Query: 84  FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIM 143
            G    NG  A  VV PAK  YK+PDN+S EE A+ EPLS  VH      + P  +V++ 
Sbjct: 108 VGVT-RNGGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVHGLDLLGIKPGDSVLVF 166

Query: 144 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
           G+GPIGL+     +  GA R+ + + + ++L +A+ LGA ET      ++    D    +
Sbjct: 167 GAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATET------VDPSREDPEAQK 220

Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTP--AAAREVDVI 261
                G DV  +  G  KT+  A+   R GG V + G+   +  V+++P     +E+ +I
Sbjct: 221 EDNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTII 280

Query: 262 GIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFN 318
           G F    T+P  I  L SGKIDVK L++HR     +E+ +A E   + G A+KV+  
Sbjct: 281 GSFINPYTFPRAIALLESGKIDVKGLVSHRLPL--EEVPEALE-GMRSGGALKVVVV 334

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  234 bits (599), Expect = 2e-75
 Identities = 104/305 (34%), Positives = 153/305 (50%), Gaps = 16/305 (5%)

Query: 24  FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF 83
           F+    +++GHE  G + EVG  V+  +VGDRV +EP I CGHC  C+AG YNLC    F
Sbjct: 51  FVPPGDIILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGF 109

Query: 84  FGS----PPTNGSLAHKVVHPAKLCY-KLPDNVSLEEGAMCEPLSVGVHAC-RRANVGPE 137
           +G        +G  A  V  PA     KLPD +  E  A+ EPL+   H    RA V P 
Sbjct: 110 YGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERAAVRPG 169

Query: 138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDT 197
             V+++G+GPIGL+ +  A+  GA  +I+ D   +RL +A+  G  +      +  + D 
Sbjct: 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV---VNPSEDDA 226

Query: 198 DVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA-AR 256
               ++   G G DV  + VG    +  AL A RPGG V ++G+   E          ++
Sbjct: 227 GAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSK 286

Query: 257 EVDVIGIFR--YRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGN-AI 313
           E+ + G  R   R  +   ++ L SGKID + LITHR      +  +A+E+ A     AI
Sbjct: 287 ELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPL--DDAAEAYELFADRKEEAI 344

Query: 314 KVMFN 318
           KV+  
Sbjct: 345 KVVLK 349

Length = 350

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  228 bits (585), Expect = 2e-73
 Identities = 113/290 (38%), Positives = 167/290 (57%), Gaps = 11/290 (3%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P ++GHE +G + EVG  V  L+VGDRV ++P ISCG C  C+ G  N C  ++  G   
Sbjct: 54  PRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHR 113

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPI 148
            +G  A  +V PA     +P+ +SL++ A+ EPL++G HA RRA V     V+++G+GPI
Sbjct: 114 -DGGFAEYIVVPAD-ALLVPEGLSLDQAALVEPLAIGAHAVRRAGVTAGDTVLVVGAGPI 171

Query: 149 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS 208
           GL  +  A+A GA R+I+ D+D +RL  AR LGAD+T  V    EDV   + ++ +  G 
Sbjct: 172 GLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD--EDVAARLRELTD--GE 226

Query: 209 GIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-R 267
           G DV  D  G   +M  A+     GG+V L+GL+K  +T        +E+ ++G     R
Sbjct: 227 GADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNATR 286

Query: 268 STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE-ISAQGGNAIKVM 316
             +P  I+ L SGK+D + LITHRF F   ++ +AF+   A  G  IKV+
Sbjct: 287 EDFPDVIDLLESGKVDPEALITHRFPFE--DVPEAFDLWEAPPGGVIKVL 334

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  217 bits (556), Expect = 6e-69
 Identities = 114/303 (37%), Positives = 171/303 (56%), Gaps = 20/303 (6%)

Query: 24  FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF 83
             +K P ++GHE AG I EVG  V   +VGDRV + P + CG C  C  G+ N+CP  + 
Sbjct: 49  TDLKPPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKK 108

Query: 84  FGSPPTNGSLAHKVVHPAKLC-----YKLPDNVSLEEGAMCEPLSVGVHACRRANVGPET 138
           FG+   +G  A  V  PA         KLPDNVS EE A+ EPL+  ++A R+A + P  
Sbjct: 109 FGNL-YDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCINAQRKAGIKPGD 167

Query: 139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD 198
            V+++G+GPIGL+  + A+A GA ++I++D++  RL  A+ LGAD T   +   ED+   
Sbjct: 168 TVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAE--EDLVEK 225

Query: 199 VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA--AR 256
           V ++ +  G G DV     G  +  + AL   R GG++   G      TV + P     R
Sbjct: 226 VRELTD--GRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYR 283

Query: 257 EVDVIGIFRYRST---WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAI 313
           E+ + G   Y ++   +   +E + SGKIDVK LITHRF    ++IE+AFE++A  G ++
Sbjct: 284 EITITG--SYAASPEDYKEALELIASGKIDVKDLITHRFPL--EDIEEAFELAAD-GKSL 338

Query: 314 KVM 316
           K++
Sbjct: 339 KIV 341

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  199 bits (507), Expect = 2e-62
 Identities = 85/256 (33%), Positives = 131/256 (51%), Gaps = 15/256 (5%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
            K P+++GHE AG++ EVG  V  ++VGDRV + P + CG C LC+              
Sbjct: 27  PKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE-----LCPGGGIL 81

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM-CEPLSVGVHACRRAN-VGPETNVMIM 143
               +G  A  VV PA     LPD +SLEE A+  EPL+   HA RRA  + P   V+++
Sbjct: 82  GEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVL 141

Query: 144 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
           G+G +GL+    A+A GA R+I+TD   ++L +A+ LGAD            +    +++
Sbjct: 142 GAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE-----EDLEEELR 195

Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVA-LTPAAAREVDVIG 262
              G G DV  D VG  +T++ AL   RPGG++ ++G       +  L     +E+ +IG
Sbjct: 196 LTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIG 255

Query: 263 IFRY-RSTWPLCIEFL 277
                R  +   ++ L
Sbjct: 256 STGGTREDFEEALDLL 271

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score =  193 bits (492), Expect = 2e-59
 Identities = 97/297 (32%), Positives = 155/297 (52%), Gaps = 13/297 (4%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           +K P++ GHE AG + EVG  V  ++VGD V+ E  I CG C  C+ G+Y++C   +  G
Sbjct: 55  IKPPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILG 114

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGS 145
              T+G  A  VV P +  +K   ++  E  ++ EPL   VH     +V    +V+I G 
Sbjct: 115 V-DTDGCFAEYVVVPEENLWKNDKDIPPEIASIQEPLGNAVHTVLAGDV-SGKSVLITGC 172

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
           GPIGL+ +  A+A GA  +I +D +  RL +A+ +GAD         E+   +V  + + 
Sbjct: 173 GPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPR---EEDVVEVKSVTD- 228

Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAA-REVDVIGIF 264
            G+G+DV  +  G  K +   L A  PGG+V ++GL    + + L      + + V GI 
Sbjct: 229 -GTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGIT 287

Query: 265 --RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
             +   TW      L+SGK+D+ P+ITH+     ++ E+AFE+  + G   KV+   
Sbjct: 288 GRKMFETWYQVSALLKSGKVDLSPVITHKLPL--EDFEEAFEL-MRSGKCGKVVLYP 341

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score =  191 bits (488), Expect = 1e-58
 Identities = 97/296 (32%), Positives = 153/296 (51%), Gaps = 14/296 (4%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           +  PMV+GHE  G + EVGSEV   +VGDRV+ E  I CGHC  C+AG  +LC   +  G
Sbjct: 55  IPVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVG 114

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGS 145
                G+ A  +V PA   +K+PD++  +  A+ +P    VH     ++  E  V+I G+
Sbjct: 115 V-NRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFGNAVHTALSFDLVGED-VLITGA 172

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQN 204
           GPIG++    A+  GA  ++ITDV+  RL +AR +GA     V+  D+ DV  ++G    
Sbjct: 173 GPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELG---- 228

Query: 205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIF 264
            M  G DV  +  G        L+    GG++ ++G+   +M +       + + + GI+
Sbjct: 229 -MTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGIY 287

Query: 265 --RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFN 318
                 TW      L+SG +D+ P+ITHRF     + +  FE   + G + KV+ +
Sbjct: 288 GREMFETWYKMSALLQSG-LDLSPIITHRFPID--DFQKGFEA-MRSGQSGKVILD 339

Length = 341

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score =  185 bits (473), Expect = 7e-57
 Identities = 93/260 (35%), Positives = 141/260 (54%), Gaps = 11/260 (4%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP-GISCGHCSLCKAGSYNLCPEMRFF 84
           V+ P+V+GHE +G I EVG +V+  +VGDRV  E    +CG C  C+ G YNLCP  +  
Sbjct: 53  VETPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGI 112

Query: 85  GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC-RRANVGPETNVMIM 143
           G+   +G  A  V+ P +  ++LP+N+SLE  A+ EPL+V VHA   R+ + P   V++ 
Sbjct: 113 GTQ-ADGGFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVHAVAERSGIRPGDTVVVF 171

Query: 144 GSGPIGLVTLLAARAFGAPRIII-TDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
           G GPIGL+    A+  GA  +++ T+ D  RL +A+ LGAD    V+   ED+   V +I
Sbjct: 172 GPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADA---VNGGEEDLAELVNEI 228

Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL-AKTEMTVALTPAAAREVDVI 261
            +  G G DV  +C G    +  AL   R GG++  +G+      ++ +     +E+ VI
Sbjct: 229 TD--GDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVI 286

Query: 262 GIFRYRST-WPLCIEFLRSG 280
           G        W   +  L SG
Sbjct: 287 GSRSSTPASWETALRLLASG 306

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score =  184 bits (468), Expect = 8e-56
 Identities = 94/311 (30%), Positives = 147/311 (47%), Gaps = 15/311 (4%)

Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  ++ Y Q  +  NF++K PMV+GHE  G I    S+   L+ G  VA+ P   CGHC 
Sbjct: 40  CGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVH--SDSSGLKEGQTVAINPSKPCGHCK 97

Query: 69  LCKAGSYNLCPEMRFFGS----PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSV 124
            C + + N C  MRFFGS    P  +G      V     C   P+    +  A  EPL+V
Sbjct: 98  YCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMAFAEPLAV 157

Query: 125 GVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 184
            +HA  +A       V + G GPIG + + A +  GA  I+  DV  + LS+AR +GAD+
Sbjct: 158 AIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK 217

Query: 185 TAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT 244
                  +   + D+   +   G   DVSF+  G   +++T L  TR  G +  +G+   
Sbjct: 218 L------VNPQNDDLDHYKAEKGY-FDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGA 270

Query: 245 EMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
                +     +E+ + G FR+   +   + +L +G I+  PL++  + FT   +E+A  
Sbjct: 271 PPEFPMMTLIVKEISLKGSFRFTEEFNTAVSWLANGVINPLPLLSAEYPFTD--LEEALI 328

Query: 305 ISAQGGNAIKV 315
            +     A KV
Sbjct: 329 FAGDKTQAAKV 339

Length = 343

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score =  180 bits (457), Expect = 3e-54
 Identities = 100/293 (34%), Positives = 157/293 (53%), Gaps = 13/293 (4%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           +K P V+GHE AG +  +G  V+ ++VGD V++E  I CG C  C+ G Y++C   + FG
Sbjct: 53  IKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFG 112

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGS 145
              T+G  A   V PA+  +K P ++  E   + EPL   VH      +  ++ V++ G+
Sbjct: 113 V-DTDGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVLAGPISGKS-VLVTGA 170

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
           GPIGL+ +  A+A GA  +I++D +  RL +A+ +GA     V+   EDV  +V  +   
Sbjct: 171 GPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYV--VNPFKEDVVKEVADL--T 226

Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAA-REVDVIGIF 264
            G G+DV  +  G  K +   L A  PGG+V L+GL   ++T+  T     + + + GI 
Sbjct: 227 DGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGIT 286

Query: 265 --RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI--SAQGGNAI 313
                 TW      ++SGK+D+ P+ITH+F F   + E  FE+  S Q G  I
Sbjct: 287 GRHMFETWYTVSRLIQSGKLDLDPIITHKFKF--DKFEKGFELMRSGQTGKVI 337

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  177 bits (451), Expect = 3e-53
 Identities = 96/311 (30%), Positives = 149/311 (47%), Gaps = 19/311 (6%)

Query: 11  QNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLC 70
            +++          + K P+ +GHE AG + EVG+ V + +VGDRVA+   I CG C+LC
Sbjct: 43  LHILDGGVP----TLTKLPLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALC 98

Query: 71  KAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA-MCEPLSVGVHAC 129
           + G  NLC      G    +G  A  +V PA+    +PD V   + A   + +    HA 
Sbjct: 99  RRGRGNLCLNQGMPGL-GIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAV 157

Query: 130 -RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
            R   V P   V+++G G +GL  +  A+A GA  +I  D+  ++L +A+ LGADE    
Sbjct: 158 VRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNS 216

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
                  D+   K    +G G DV FD VG   T   A  A +PGG++ ++GL + ++TV
Sbjct: 217 -----LDDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTV 271

Query: 249 ALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA 307
            L+   ARE+ +IG F       P  ++ +  GK+D              EI +  E   
Sbjct: 272 DLSDLIARELRIIGSFGGTPEDLPEVLDLIAKGKLD---PQVETRPL--DEIPEVLERLH 326

Query: 308 QGGNAIKVMFN 318
           +G    +V+  
Sbjct: 327 KGKVKGRVVLV 337

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  172 bits (438), Expect = 3e-51
 Identities = 89/300 (29%), Positives = 140/300 (46%), Gaps = 18/300 (6%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC----PEM 81
            K  M++GHE  G + EVGS+VK L+ GDRV++     CG C  C+ G +  C       
Sbjct: 52  AKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGW 111

Query: 82  RFFGSPPTNGSLAHKVVHPA--KLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPET 138
           +       +G  A  V  P       K+PD +  E+  M  + L  G H    A + P +
Sbjct: 112 KLGNRI--DGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGAELAGIKPGS 169

Query: 139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD 198
            V ++G+GP+GL  +  AR  GA RII  D + +RL +A+  GA +   ++    D+   
Sbjct: 170 TVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDI--INPKNGDIVEQ 227

Query: 199 VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVAL-TPAAARE 257
           + ++    G G+D   + VGF++T   A+   RPGG +  +G+      + L      + 
Sbjct: 228 ILELTG--GRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKN 285

Query: 258 VDV-IGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG-GNAIKV 315
           +    G+   R+  P  ++ +  GKID   LITHRF      I  A+ +        IKV
Sbjct: 286 LTFKTGLVPVRARMPELLDLIEEGKIDPSKLITHRFPLDD--ILKAYRLFDNKPDGCIKV 343

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  168 bits (428), Expect = 7e-50
 Identities = 98/299 (32%), Positives = 147/299 (49%), Gaps = 20/299 (6%)

Query: 28  KPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 87
           + ++ GHE AG++  VG  V    VGDRV +   + CG C  C+ G   LC   R     
Sbjct: 54  QGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGW 113

Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV----HACRRANVGPETNVMIM 143
             +G  A  ++ P K    LPD++S  +GA+   L  G+    HA RR  V     V+++
Sbjct: 114 NRDGGHAEYMLVPEKTLIPLPDDLSFADGAL---LLCGIGTAYHALRRVGVSGRDTVLVV 170

Query: 144 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV-STDIEDVDTDVGKI 202
           G+GP+GL  L+ ARA GA  +I  D   +RL +A+ LGAD        D++++       
Sbjct: 171 GAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTS-- 228

Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG 262
               G+G DV+ +C G       AL A RP G++ L+G               ++  +IG
Sbjct: 229 ----GAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGELTIEVSNDLIRKQRTLIG 284

Query: 263 IFRYRSTWPL--CIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
            + Y S   +  C EFL   K++V  L+THRFG  Q    +A+ + AQ G + KV+F  
Sbjct: 285 SW-YFSVPDMEECAEFLARHKLEVDRLVTHRFGLDQ--APEAYALFAQ-GESGKVVFVF 339

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  166 bits (423), Expect = 8e-49
 Identities = 92/311 (29%), Positives = 133/311 (42%), Gaps = 39/311 (12%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR---FFG 85
           P V+GHE AGI+E VG  V S++ GD V L     CG C  C +G  NLC  +R     G
Sbjct: 56  PAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKG 115

Query: 86  SPP--------TNGSLAH---------KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV-- 126
           + P            + H           V       K+  +  LE+      L  GV  
Sbjct: 116 TMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKAC---LLGCGVTT 172

Query: 127 ---HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 183
                   A V P   V + G G +GL  +  A+A GA RII  D++ ++L +A+  GA 
Sbjct: 173 GIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT 232

Query: 184 ETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK 243
                     +VD  V  I      G D +F+CVG  + M  AL AT  GG   +IG+A 
Sbjct: 233 HFVNPK----EVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAG 288

Query: 244 TEMTVALTPA---AAREV--DVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKE 298
               ++  P      R       G  R RS  P  ++   +GK+ +  L+TH      ++
Sbjct: 289 AGQEISTRPFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPL--ED 346

Query: 299 IEDAFEISAQG 309
           I +AF++  +G
Sbjct: 347 INEAFDLMHEG 357

Length = 366

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score =  162 bits (412), Expect = 2e-47
 Identities = 93/296 (31%), Positives = 158/296 (53%), Gaps = 13/296 (4%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKS--LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF 83
           VK PM+ GHE  G + E+G   +   ++VGDRV  E  + C +C  C  G Y +C +   
Sbjct: 60  VKPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL 119

Query: 84  FG-SPPTNGSLAHKVVHPAK-LCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVM 141
           +G     NG +A  +  P + + +K+PD++  E+  + EPL+  +HA  RAN+  +  V+
Sbjct: 120 YGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILIEPLACALHAVDRANIKFDDVVV 179

Query: 142 IMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGK 201
           + G+GP+GL  + AAR     ++I+ D+  +RL++AR  GAD       +  +VD  V K
Sbjct: 180 LAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVV----LNPPEVD-VVEK 234

Query: 202 IQNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAR-EVD 259
           I+    G G D+  +  G    +   LN  R  G+     +    +TV  +    R E+D
Sbjct: 235 IKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSIIGDRKELD 294

Query: 260 VIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKV 315
           V+G       +P+ I+ + SG++    ++TH+F    ++ E+AFE+ A+G ++IKV
Sbjct: 295 VLGSHLGPYCYPIAIDLIASGRLPTDGIVTHQFPL--EDFEEAFELMARGDDSIKV 348

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score =  155 bits (393), Expect = 1e-44
 Identities = 94/296 (31%), Positives = 140/296 (47%), Gaps = 18/296 (6%)

Query: 31  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---GSP 87
           V+GHE  G + EVG EV++L+VGDRV     I+CG C  C+ G    C +   F   GSP
Sbjct: 56  VLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSP 115

Query: 88  PTNGSLAHKVVHPA--KLCYKLPDNVSLEEG-AMCEPLSVGVHACRRANVGPETNVMIMG 144
             +G+ A  V  P       KLPD +S E    + + L  G    +RA V P   V ++G
Sbjct: 116 NLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKRAQVRPGDTVAVIG 175

Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
            GP+GL  +L+A+  GA R+   D   +RL  A  LGA E              V +++ 
Sbjct: 176 CGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGA-EPINFED-----AEPVERVRE 229

Query: 205 AM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE-MTVALTPAAAREVDV-I 261
           A  G G DV  + VG    +  A +  RPGG +  +G+   E        A  + + +  
Sbjct: 230 ATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRF 289

Query: 262 GIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF 317
           G    RS +P  +  L SG++D++ LI HR      E  +A+ +  +    +KV+ 
Sbjct: 290 GRCPVRSLFPELLPLLESGRLDLEFLIDHRMPLE--EAPEAYRLFDK-RKVLKVVL 342

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  155 bits (394), Expect = 1e-44
 Identities = 93/314 (29%), Positives = 134/314 (42%), Gaps = 39/314 (12%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE------MR 82
           P V+GHE AG++EEVG  V  ++ GD V L    +CG C  C  G  NLC         +
Sbjct: 54  PAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQ 113

Query: 83  FFGSPP-------------TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV--- 126
                                G+ A   V P     K+ D++ L+  A+   L  GV   
Sbjct: 114 LPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAAL---LGCGVTTG 170

Query: 127 --HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 184
                  A V P   V ++G G +GL  +  AR  GA RII  D   ++L +AR  GA  
Sbjct: 171 VGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGA-- 228

Query: 185 TAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT 244
           T  V+   +D    V  + +  G G D +F+ VG   T+  AL  TR GG   ++G+   
Sbjct: 229 THTVNASEDDAVEAVRDLTD--GRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPP 286

Query: 245 EMTVALTPA--AAREVDVIGIF----RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKE 298
             TV+L        E  + G        R   P  ++  R+G++ +  L+T R+     E
Sbjct: 287 GETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSL--DE 344

Query: 299 IEDAFEISAQGGNA 312
           I +AF     G NA
Sbjct: 345 INEAFADMLAGENA 358

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  155 bits (393), Expect = 3e-44
 Identities = 102/340 (30%), Positives = 152/340 (44%), Gaps = 59/340 (17%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC------P 79
           +KK  ++GHE  G++EEVG EV++L+VGDRV +   I+CG C  CK G Y+ C       
Sbjct: 52  MKKGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSA 111

Query: 80  EMR---------FFGSPPTNGSLAH------KVVHPAKLCYKLPDNVSLEEGA-MCEPLS 123
           EM           FG     G  A       +V       +K+PD++S E+   + + L 
Sbjct: 112 EMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILP 171

Query: 124 VGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 183
            G HA   A V P   V + G GP+GL    +A+  GA R+I  D   +RL +AR+    
Sbjct: 172 TGYHAAELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA 231

Query: 184 ETAKVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVGFD-------KTMST---------- 225
           ET     + E+VD  V  ++    G G DV  D VG +       K              
Sbjct: 232 ET----INFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPD 287

Query: 226 ----ALNATRPGGKVCLIGL-AKTEMTVALTPAAAREVDVIG----IFRYRSTWPLCIEF 276
               A+ A R GG V +IG+   T     +  A  + + +      + RY    P  +E 
Sbjct: 288 ALREAIQAVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTHVQRY---LPRLLEL 344

Query: 277 LRSGKIDVKPLITHRFGFTQKEIEDAFEI-SAQGGNAIKV 315
           + SG++D   +ITHR      +  +A++I   +    IKV
Sbjct: 345 IESGELDPSFIITHRLPLE--DAPEAYKIFDKKEDGCIKV 382

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  153 bits (388), Expect = 5e-44
 Identities = 86/287 (29%), Positives = 132/287 (45%), Gaps = 24/287 (8%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
            K P  +GHE AG +EEVGS V  L+ GD V + P   CG C  C+ G  N C   RF G
Sbjct: 55  YKLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPG 114

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS-VGV---HACRRAN--VGPETN 139
              T+G  A  ++ P++   KLP  +   E A   PL+  G+   HA ++A   + P + 
Sbjct: 115 I-GTDGGFAEYLLVPSRRLVKLPRGLDPVEAA---PLADAGLTAYHAVKKALPYLDPGST 170

Query: 140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDV 199
           V+++G G +G + +   RA     +I  D   + L +A  LGAD    V    +DV  +V
Sbjct: 171 VVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADH---VLNASDDVVEEV 227

Query: 200 GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVD 259
            ++    G G D   D VG D+T++ A      GG+  ++G       +  +     E+ 
Sbjct: 228 RELTG--GRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGG-HGRLPTSDLVPTEIS 284

Query: 260 VIGIF--RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
           VIG           + +    SGK+  K  IT    F  ++  +A +
Sbjct: 285 VIGSLWGTRAELVEV-VALAESGKV--KVEITK---FPLEDANEALD 325

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  151 bits (383), Expect = 4e-43
 Identities = 89/289 (30%), Positives = 136/289 (47%), Gaps = 31/289 (10%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALE-PGISCGHCSLCKAGSYNLCPEMRFF 84
            K P++ GHE  G + EVG  V  L+VGDRV +    ISCG C  C++G+ NLCP  +  
Sbjct: 55  PKLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKIT 114

Query: 85  GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS-VGV---HACRRANVGPETNV 140
           G   T+G  A  VV PA+   K+P+ + L E A   PL   G+    A ++ANV P   V
Sbjct: 115 GY-TTDGGYAEYVVVPARYVVKIPEGLDLAEAA---PLLCAGITTYRALKKANVKPGKWV 170

Query: 141 MIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVG 200
            ++G+G +G + +  A+A GA  +I      ++L +A+ LGAD           +++   
Sbjct: 171 AVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHV---------INSSDS 220

Query: 201 KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA--AREV 258
               A+    D   D VG   T+  +L A R GG + L+GL        L       +E+
Sbjct: 221 DALEAVKEIADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEI 279

Query: 259 DVIG--IFRYRSTWPLCIEFLR-SGKIDVKPLITHRFGFTQKEIEDAFE 304
            ++G  +           E L  + +  +KP I         EI +A+E
Sbjct: 280 SIVGSLVGTRADL----EEALDFAAEGKIKPEILETIPLD--EINEAYE 322

Length = 339

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  151 bits (383), Expect = 4e-43
 Identities = 95/313 (30%), Positives = 140/313 (44%), Gaps = 28/313 (8%)

Query: 25  IVKKPMVIGHECAGIIEEVGSEVKS------LEVGDRVALEPGISCGHCSLCKAGSYNLC 78
            V  P+++GHE  G +  +G  V +      L+VGDRV    G  CG C  C  G    C
Sbjct: 51  RVPLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKC 110

Query: 79  PEMRFFGS------PPTNGSLA-HKVVHPAKLCYKLPDNVSLE--EGAMCEPLSVGVHAC 129
              + +G       P  +G  A H  + P     ++PDNV  E    A C  L+  + A 
Sbjct: 111 ENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANC-ALATVLAAL 169

Query: 130 RRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
            RA  VG    V++ G+GP+GL  + AA+  GA R+I+ D   +RL +AR  GAD T  +
Sbjct: 170 DRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADAT--I 227

Query: 189 STDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMT 247
             D          +++  G  G DV  +  G    +   L   R GG   L+G      T
Sbjct: 228 DIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGT 287

Query: 248 VALTPAAA--REVDVIGIFRYR-STWPLCIEFLR--SGKIDVKPLITHRFGFTQKEIEDA 302
           V L P     + + +IG+  Y  S     + FL     +     L+THR+    ++I +A
Sbjct: 288 VPLDPERIVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFPFAELVTHRYP--LEDINEA 345

Query: 303 FEISAQGGNAIKV 315
            E  A+ G A+KV
Sbjct: 346 LE-LAESGTALKV 357

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score =  150 bits (382), Expect = 4e-43
 Identities = 90/291 (30%), Positives = 142/291 (48%), Gaps = 12/291 (4%)

Query: 31  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN 90
           ++GHE  G++EEVGS V + +VGDRV +    SCG C  C+ G Y+ C    +      +
Sbjct: 57  ILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLID 116

Query: 91  GSLAH--KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC--RRANVGPETNVMIMGSG 146
           G+ A   ++ H     YKLP+ V  E   M   +    + C      V P   V I+G+G
Sbjct: 117 GTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAG 176

Query: 147 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM 206
           P+GL  LL A+ +   +II+ D+D  RL +A+ LGA  T   +    D    V ++ +  
Sbjct: 177 PVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK--GDAIEQVLELTD-- 232

Query: 207 GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY 266
           G G+DV  + VG   T         PGG +  +G+    + + L     + + +      
Sbjct: 233 GRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITTGLVD 292

Query: 267 RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS--AQGGNAIKV 315
            +T P+ ++ + SGK+D   L+THRF  +  EIE A++    A    A+KV
Sbjct: 293 TNTTPMLLKLVSSGKLDPSKLVTHRFKLS--EIEKAYDTFSAAAKHKALKV 341

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  145 bits (368), Expect = 5e-41
 Identities = 94/288 (32%), Positives = 138/288 (47%), Gaps = 42/288 (14%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF-- 83
           V  P V GHE AG++ EVG +V    VGDRV +   + CG C  C+AG  N+C       
Sbjct: 52  VTLPHVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPG 111

Query: 84  FGSPPTNGSLAHKV-VHPAKL-CYKLPDNVSLEEGAMCEPLSVGVHACR----------R 131
           F  P   GS A  V V  A +   +LPD+V     A      +G   CR          +
Sbjct: 112 FTHP---GSFAEYVAVPRADVNLVRLPDDVDFVTAA-----GLG---CRFATAFRALVHQ 160

Query: 132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 191
           A V P   V + G G +GL  ++ A A GA R+I  D+D  +L +AR LGA  T   +++
Sbjct: 161 ARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVN-ASE 218

Query: 192 IEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL-AKTEMTVAL 250
           +EDV      +++  G G  VS D +G  +T   ++ + R  G+   +GL    E  VAL
Sbjct: 219 VEDV---AAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVAL 275

Query: 251 TPA--AAREVDVIGIF-----RYRSTWPLCIEFLRSGKIDVKPLITHR 291
                 ARE++++G       RY +     +  + SGK+D +PL+   
Sbjct: 276 PMDRVVARELEIVGSHGMPAHRYDAM----LALIASGKLDPEPLVGRT 319

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score =  144 bits (364), Expect = 1e-40
 Identities = 84/305 (27%), Positives = 141/305 (46%), Gaps = 17/305 (5%)

Query: 20  RCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP 79
           R  N   K P VIGHE  G+I+ VG  V +  +G+RVA++P ISCGHC  C  G  N+C 
Sbjct: 45  RGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCT 104

Query: 80  EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETN 139
            +   G    +G  +   V PAK  +++PD ++ +   M EP ++  +   R     +  
Sbjct: 105 SLVVLGV-HRDGGFSEYAVVPAKNAHRIPDAIADQYAVMVEPFTIAANVTGRTGPTEQDV 163

Query: 140 VMIMGSGPIGLVTLLA-ARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD 198
            +I G+GP+GL  +      +    +I+ D   +RL++A+  GAD        I +    
Sbjct: 164 ALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWV------INNAQEP 217

Query: 199 VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREV 258
           +G+     G    +  D       +  A+    P  ++ L+G +     +       +E 
Sbjct: 218 LGEALEEKGIKPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKE- 276

Query: 259 DVIGIFRYR---STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG-GNAIK 314
             + IF  R   + +P+ I++L  G ID + LITH F F  + + DA E+  +   +  K
Sbjct: 277 --LSIFSSRLNANKFPVVIDWLSKGLIDPEKLITHTFDF--QHVADAIELFEKDQRHCCK 332

Query: 315 VMFNL 319
           V+   
Sbjct: 333 VLLTF 337

Length = 339

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  142 bits (361), Expect = 6e-40
 Identities = 83/281 (29%), Positives = 126/281 (44%), Gaps = 13/281 (4%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           VK P+V+GHE  G +  VG +   ++VGD+V + P I CG C +C AG  NLC + R  G
Sbjct: 64  VKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALG 123

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGVHACRRANVG-PETNVMI 142
               +G  A  V+ P       P  +     A   C  L+    A ++      +  V+I
Sbjct: 124 IFQ-DGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTA-YSAVKKLMPLVADEPVVI 181

Query: 143 MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
           +G+G +GL+ L   +A G   II+ D+D  +L  A+  GAD       +  D D    +I
Sbjct: 182 IGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVV----VNGSDPD-AAKRI 236

Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG 262
             A G G+D   D V    T S A +    GGK+ L+GL   E T+ L     R + + G
Sbjct: 237 IKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALTIQG 296

Query: 263 IF--RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIED 301
            +         L +   ++GK+   PL           ++D
Sbjct: 297 SYVGSLEELREL-VALAKAGKLKPIPLTERPLSDVNDALDD 336

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score =  138 bits (350), Expect = 2e-38
 Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 20/292 (6%)

Query: 29  PMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 87
            +V+GHE  G + + G   +  L+VG RV   P + CG  + C  G            SP
Sbjct: 64  DIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGL-----------SP 112

Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGP 147
              G  A  ++    L  ++PD +S+E+ A+ EPL+VG+HA RRA + P    +++G GP
Sbjct: 113 EAPGGYAEYMLLSEALLLRVPDGLSMEDAALTEPLAVGLHAVRRARLTPGEVALVIGCGP 172

Query: 148 IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMG 207
           IGL  + A +A G   I+ +D   +R ++A  +GAD    V     D        + A  
Sbjct: 173 IGLAVIAALKARGVGPIVASDFSPERRALALAMGAD---IVVDPAADSPFAAWAAELARA 229

Query: 208 SGI--DVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFR 265
            G    V F+CVG    +   +    PGG++ ++G+      +    A  +E+ +     
Sbjct: 230 GGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESDNIEPALAIRKELTLQFSLG 289

Query: 266 Y-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM 316
           Y    +   ++ L  GK+DV P++T   G     + DAFE      +  K++
Sbjct: 290 YTPEEFADALDALAEGKVDVAPMVTGTVGL--DGVPDAFEALRDPEHHCKIL 339

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  138 bits (351), Expect = 3e-38
 Identities = 91/320 (28%), Positives = 136/320 (42%), Gaps = 48/320 (15%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM------- 81
           P V+GHE AG++E VGS V  L+ GD V L    SCG C+ C +G    C          
Sbjct: 56  PAVLGHEGAGVVEAVGSAVTGLKPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSG 114

Query: 82  -RFFGSPP--TNG------------SLA-HKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG 125
            R  GS P   +             S A + VVH  +   K+  +V LE  A   PL  G
Sbjct: 115 RRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVH-ERNVVKVDKDVPLELLA---PLGCG 170

Query: 126 VHA-----CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL 180
           +              P +++ + G+G +GL  ++AA+  G   II  D+   RL +A+ L
Sbjct: 171 IQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL 230

Query: 181 GADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG 240
           GA  T  ++   ED+   V  I+   G G+D + D  G    +  A++A  P G + L+G
Sbjct: 231 GA--THVINPKEEDL---VAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVG 285

Query: 241 LAK--TEMTVALTPAAAREVDVIGI---FRYRSTW-PLCIEFLRSGKIDVKPLITHRFGF 294
                 E+T+ +         + G+         + P  IE  R GK     L+T    +
Sbjct: 286 APPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTF---Y 342

Query: 295 TQKEIEDAFEISAQGGNAIK 314
             ++I  A   S   G  IK
Sbjct: 343 PFEDINQAIADSE-SGKVIK 361

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  138 bits (349), Expect = 4e-38
 Identities = 99/313 (31%), Positives = 144/313 (46%), Gaps = 40/313 (12%)

Query: 29  PMVIGHECAGIIEEVGSEVKS---LEVGDRVALEPGISCGHCSLCKAGSYNLCP------ 79
           P V+GHE +G + EVG  V++   L VGDRV     + CG C  C  G  NLC       
Sbjct: 54  PFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYN 113

Query: 80  ---------EMRFFGSPPT------NGSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPL 122
                      R F            G LA   V PA     LP+++   E A+  C   
Sbjct: 114 RLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGF 173

Query: 123 SVGVHACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 181
           +    A + A  V P   V ++G G +G   +  A+AFGA  II  DV  ++L+ A+ LG
Sbjct: 174 T-AYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELG 232

Query: 182 ADETAKVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG 240
           A  T  V+   ED    V  I+    G G+DV  + +G  +T   AL+  R GG+  ++G
Sbjct: 233 ATHT--VNAAKEDA---VAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287

Query: 241 LAKTEMTVAL--TPAAAREVDVIGIF--RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQ 296
           LA    T  +  T    R + +IG +  R R   P  +    SGK+D + L+TH++    
Sbjct: 288 LAPGGATAEIPITRLVRRGIKIIGSYGARPRQDLPELVGLAASGKLDPEALVTHKYKL-- 345

Query: 297 KEIEDAFEISAQG 309
           +EI +A+E   +G
Sbjct: 346 EEINEAYENLRKG 358

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  137 bits (346), Expect = 7e-38
 Identities = 90/285 (31%), Positives = 134/285 (47%), Gaps = 22/285 (7%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
            K P+++GHE  G +EEVG  V+  + GDRV L   I CG C  C +G  NLC     +G
Sbjct: 52  GKYPLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYG 111

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIM 143
               +G  A  V  P +   KLPDNVS E  A   C  +   VHA +RA V     V++ 
Sbjct: 112 E-EVDGGFAEYVKVPERSLVKLPDNVSDESAALAAC-VVGTAVHALKRAGVKKGDTVLVT 169

Query: 144 G-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
           G  G +G+  +  A+A GA  I +T    ++L I + LGAD       D      DV K+
Sbjct: 170 GAGGGVGIHAIQLAKALGARVIAVTRSP-EKLKILKELGAD----YVIDGSKFSEDVKKL 224

Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG-LAKTEMTVALTPAAAREVDVI 261
                 G DV  + VG   T+  +L +   GG++ LIG +      +       +E+ +I
Sbjct: 225 -----GGADVVIELVG-SPTIEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRII 278

Query: 262 GIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI 305
           G     ++     ++ ++ GKI  KP+I        ++I +A E 
Sbjct: 279 GSISATKADVEEALKLVKEGKI--KPVIDRVVSL--EDINEALED 319

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score =  137 bits (346), Expect = 7e-38
 Identities = 86/277 (31%), Positives = 139/277 (50%), Gaps = 24/277 (8%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+ +GHE +G +E VGS V  L  GD VA  P + C  C  C  G Y+LC +  F GS  
Sbjct: 54  PITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRR 113

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPI 148
             G+  + VV    L + LP ++ +E+GA  EP++VG+HA   A      NV+I+G+G I
Sbjct: 114 DGGNAEYIVVKRKNL-FALPTDMPIEDGAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTI 172

Query: 149 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS 208
           GL+ +  A A GA  +   D++ ++L++A++LGA +T          +    +IQ+ +  
Sbjct: 173 GLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQT------FNSREMSAPQIQSVLR- 225

Query: 209 GIDVSFD-----CVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAA---REVDV 260
             ++ FD       G  +T+  A+    P  ++ L+G    ++ +          +E+ V
Sbjct: 226 --ELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFGKILRKELTV 283

Query: 261 IGIF-RYRSTWP-----LCIEFLRSGKIDVKPLITHR 291
           IG +  Y S WP          L   K+ ++PLI HR
Sbjct: 284 IGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHR 320

Length = 347

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  136 bits (345), Expect = 2e-37
 Identities = 83/310 (26%), Positives = 129/310 (41%), Gaps = 35/310 (11%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM------- 81
           P+++GHE AGI+E +G  V +L+ GD+V    G  CG C  C     NLC +        
Sbjct: 54  PVILGHEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRG 113

Query: 82  -------RFFGSPPTN------GSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGV 126
                  RF              + A   V       K+  +  LE+  +  C   S G 
Sbjct: 114 LMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCG-FSTGY 172

Query: 127 HAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 185
            A    A V P +   + G G +GL  ++  +A GA RII  D++  +   A+ LGA E 
Sbjct: 173 GAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATEC 232

Query: 186 AKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI-GLAKT 244
                  + +   V  +      G+D +F+ +G   T+  AL+ATR GG   ++ G+  +
Sbjct: 233 INPRDQDKPI---VEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPS 289

Query: 245 EMTVALTPAAARE-----VDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEI 299
                L P            V G ++ + + P  +   R  K  +  LITH   F  +EI
Sbjct: 290 GTEATLDPNDLLTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPF--EEI 347

Query: 300 EDAFEISAQG 309
            D F++   G
Sbjct: 348 NDGFDLMRSG 357

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  134 bits (339), Expect = 5e-37
 Identities = 84/293 (28%), Positives = 130/293 (44%), Gaps = 28/293 (9%)

Query: 28  KPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 87
            P V GHE  GI+EE       L VG RV  E  I+CG C  C+ G Y  CP     G  
Sbjct: 50  FPGVPGHEFVGIVEEGPEA--EL-VGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIV 106

Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGP 147
             +G+ A  +  P +  + +PD V  E+    EPL+  +    +  + P   V ++G G 
Sbjct: 107 DRDGAFAEYLTLPLENLHVVPDLVPDEQAVFAEPLAAALEILEQVPITPGDKVAVLGDGK 166

Query: 148 IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMG 207
           +GL+        G P +++     ++L++AR LG       +   ++ +++        G
Sbjct: 167 LGLLIAQVLALTG-PDVVLVGRHSEKLALARRLGV-----ETVLPDEAESE--------G 212

Query: 208 SGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYR 267
            G DV  +  G    +  AL   RP G V L        +  LT A   E+ ++G     
Sbjct: 213 GGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVG----- 267

Query: 268 S---TWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF 317
           S    +   +  LR G +DV PLIT  +     E  +AFE +A+ G A+KV+ 
Sbjct: 268 SRCGPFAPALRLLRKGLVDVDPLITAVYPLE--EALEAFERAAEPG-ALKVLL 317

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  134 bits (339), Expect = 1e-36
 Identities = 84/307 (27%), Positives = 129/307 (42%), Gaps = 33/307 (10%)

Query: 30  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM----RFFG 85
           M++GHE  G++EEVGSEVK  + GDRV +            + G  +    M    +F  
Sbjct: 55  MILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKF-- 112

Query: 86  SPPTNGSLAHKVVHP---AKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVM 141
           S   +G  A         A L   LPD ++ E+  M  + +S G H    AN+     V 
Sbjct: 113 SNFKDGVFAEYFHVNDADANL-APLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVA 171

Query: 142 IMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGK 201
           + G GP+GL+ +  AR  GA RII       R+ +A+  GA +   V     DV   + K
Sbjct: 172 VFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDI--VDYKNGDVVEQILK 229

Query: 202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVI 261
           +    G G+D      G   T   AL   +PGG +  +     +  + +     RE   +
Sbjct: 230 LTG--GKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPI----PREEWGV 283

Query: 262 GIFRYRSTWPLC----------IEFLRSGKIDVKPLITHRF-GFTQKEIEDAFEISA-QG 309
           G+        LC             +  G++D   L+TH F GF   +IE+A  +   + 
Sbjct: 284 GMGHKTINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFFGF--DDIEEALMLMKDKP 341

Query: 310 GNAIKVM 316
            + IK +
Sbjct: 342 DDLIKPV 348

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score =  133 bits (335), Expect = 6e-36
 Identities = 82/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+VIGHE +G++E+ G  VK+ E GD V  E  + CG C  C++GS N C  ++  G   
Sbjct: 88  PVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGF-S 146

Query: 89  TNGSLAHKVVHPAKLCYKLPDNV-------SLEEGAMCEPLSVGVHAC--RRANVGPETN 139
            +G+ A  +   A+  +++ +         + E GA+ EP SV  +    R     P   
Sbjct: 147 ADGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAY 206

Query: 140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDV 199
           V++ G+GPIGL  +  A+A GA ++I  ++  +R ++A+ +GAD     +          
Sbjct: 207 VVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYV--FNPTKMRDCLSG 264

Query: 200 GKIQNAM-GSGIDVSFDCVG-FDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAARE 257
            K+     G G D+  +  G    T+     +    GK+  IG A T + + L     R 
Sbjct: 265 EKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQVRR 324

Query: 258 VDVIGIFRYR--STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
             ++G   +     +P  I+ + SGKID+  +IT RF    + I +A + +++
Sbjct: 325 AQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPL--EGIMEAIKAASE 375

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  131 bits (332), Expect = 8e-36
 Identities = 85/283 (30%), Positives = 132/283 (46%), Gaps = 20/283 (7%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P ++G + AG++E VG  V +++ G RV + PGISCG C  C AG  NLC +    G   
Sbjct: 58  PHILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGE-H 116

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV--HACR-RANVGPETNVMIMG- 144
            +G  A  V  PA+    +PDN+S EE A   PL+     H    RA + P   V++ G 
Sbjct: 117 VDGGYAEYVAVPARNLLPIPDNLSFEEAA-AAPLTFLTAWHMLVTRARLRPGETVLVHGA 175

Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
              +G   +  A+ FGA  +I T     +L  A+ LGAD    +    ED   +V ++  
Sbjct: 176 GSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYV--IDYRKEDFVREVRELTG 232

Query: 205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT--EMTVALTPAAAREVDVIG 262
               G+DV  + VG   T   +L +   GG++   G A T  E  + L     R++ ++G
Sbjct: 233 --KRGVDVVVEHVG-AATWEKSLKSLARGGRLVTCG-ATTGYEAPIDLRHVFWRQLSILG 288

Query: 263 IFR-YRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
                ++     +  +  GK+  KP+I   F    +E  +A  
Sbjct: 289 STMGTKAELDEALRLVFRGKL--KPVIDSVFPL--EEAAEAHR 327

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  129 bits (327), Expect = 3e-35
 Identities = 76/295 (25%), Positives = 118/295 (40%), Gaps = 45/295 (15%)

Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
             P + G E AG++  VGS V   +VGDRVA                           G 
Sbjct: 56  PLPFIPGSEAAGVVVAVGSGVTGFKVGDRVA-------------------------ALGG 90

Query: 87  PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG 144
              +G  A  VV PA     LPD +S EE A      L+  +    RA + P   V++ G
Sbjct: 91  VGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHG 150

Query: 145 -SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
            +G +G   +  A+A GA  + +     ++L + + LGAD    ++   ED    V ++ 
Sbjct: 151 AAGGVGSAAIQLAKALGATVVAVVSSS-EKLELLKELGADHV--INYREEDFVEQVRELT 207

Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA--KTEMTVALTPAAAREVDVI 261
              G G+DV  D VG   T + +L A  PGG++  IG       + + L P   + + + 
Sbjct: 208 G--GKGVDVVLDTVG-GDTFAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLR 264

Query: 262 GIFRYRSTWPLCIEF-------LRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG 309
           G+           E        L SGK+  KP+I   +   +     A  +  + 
Sbjct: 265 GVTLGSRDPEALAEALAELFDLLASGKL--KPVIDRVYPLAEAPAAAAHLLLERR 317

Length = 326

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  130 bits (328), Expect = 5e-35
 Identities = 97/310 (31%), Positives = 140/310 (45%), Gaps = 37/310 (11%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP--------- 79
           PM +GHE AG++ EVG  V  LEVGD V L    SCGHC  C  G   LC          
Sbjct: 62  PMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAG 121

Query: 80  -------EMRFFGSPPTN----GSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGV 126
                   +R  G    +     + A   V   +   K+  +V LE  A+  C  L+ GV
Sbjct: 122 TLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLT-GV 180

Query: 127 HAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 185
            A    A V P  +V ++G G +GL  LL A A GA +++  D++  +L++AR LGA  T
Sbjct: 181 GAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA--T 238

Query: 186 AKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE 245
           A V+    +    V +++   G G+D +F+  G    + TA   TR GG     GL   E
Sbjct: 239 ATVNAGDPNA---VEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPE 295

Query: 246 MTVALTPA--AAREVDVIGIFR----YRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEI 299
             +++      A E  + G +      R   P  +    SG++ V  L+THR      EI
Sbjct: 296 ARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPL--DEI 353

Query: 300 EDAFEISAQG 309
            + F+  A G
Sbjct: 354 NEGFDRLAAG 363

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score =  128 bits (323), Expect = 2e-34
 Identities = 76/220 (34%), Positives = 110/220 (50%), Gaps = 17/220 (7%)

Query: 32  IGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNG 91
           IGHE  G++EEVGSEV S++ GD V     IS G C  C+AG    C    F+G+    G
Sbjct: 57  IGHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGG 116

Query: 92  -SLAHKVVHPAKLCYKLPDNVSLEEG------AMCEPLSVGVHACRRANVGPETNVMIMG 144
                +V        K+P + S +E       A+ + +  G HA   A V P + V+++G
Sbjct: 117 QGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAAVSAGVRPGSTVVVVG 176

Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI--EDVDTDVGKI 202
            G +GL  +LAA+  GA RII       R ++AR  GA       TDI  E  +  V ++
Sbjct: 177 DGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGA-------TDIVAERGEEAVARV 229

Query: 203 QNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL 241
           +    G G D   +CVG  ++M  A+   RPGG+V  +G+
Sbjct: 230 RELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGV 269

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score =  127 bits (320), Expect = 2e-34
 Identities = 77/296 (26%), Positives = 121/296 (40%), Gaps = 43/296 (14%)

Query: 28  KPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 87
           +P   GHE  G +  +G  V+ L VGDRVA   G                          
Sbjct: 51  EPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLSG-------------------------- 84

Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGP 147
              G+ A   +  A     LP      +    EPL   ++  RR  +     V ++G+G 
Sbjct: 85  ---GAFAEYDLADADHAVPLPSL-LDGQAFPGEPLGCALNVFRRGWIRAGKTVAVIGAGF 140

Query: 148 IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMG 207
           IGL+ L  A A GA R+I  D    RL++AR LGA E   V+ D E +   V ++    G
Sbjct: 141 IGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEV--VTDDSEAIVERVRELTG--G 196

Query: 208 SGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEM-TVALTPAAAREVDVIGI-FR 265
           +G DV  + VG    +  A       G++ + G  +     V       + +D+I    R
Sbjct: 197 AGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVER 256

Query: 266 ----YRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNA-IKVM 316
                       ++ +  G++D+  L+TH F    +E+ DAFE + +  +  IK +
Sbjct: 257 DPRIGLEGMREAVKLIADGRLDLGSLLTHEFPL--EELGDAFEAARRRPDGFIKGV 310

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score =  125 bits (315), Expect = 7e-34
 Identities = 69/315 (21%), Positives = 111/315 (35%), Gaps = 60/315 (19%)

Query: 17  QTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYN 76
           + +      +  P+  G+   G + EVGS V   + GDRV                    
Sbjct: 9   EGLSTGTEKLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVF------------------- 49

Query: 77  LCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGP 136
                         G  A +VV PA L   LPD +  E  A+    +  ++  R A    
Sbjct: 50  ------------CFGPHAERVVVPANLLVPLPDGLPPERAALTALAATALNGVRDAEPRL 97

Query: 137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVD 196
              V ++G G +GL+    A+A GA  ++  D D  R  +A  LG  +     T  E   
Sbjct: 98  GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEI-- 155

Query: 197 TDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAR 256
                     G G DV  +  G    + TAL   R  G+V L+G    +  +       +
Sbjct: 156 ---------GGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFK 206

Query: 257 EVDVIG---IFRYRSTWP----------LCIEFLRSGKIDVKPLITHRFGFTQKEIEDAF 303
            + +         R   P            ++ L  G+++   LITHR  F   +  +A+
Sbjct: 207 RLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLE--ALITHRVPFE--DAPEAY 262

Query: 304 E-ISAQGGNAIKVMF 317
             +       +KV+ 
Sbjct: 263 RLLFEDPPECLKVVL 277

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score =  119 bits (300), Expect = 6e-31
 Identities = 79/260 (30%), Positives = 118/260 (45%), Gaps = 34/260 (13%)

Query: 24  FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM-- 81
              +  +V+GHE  G +EEVGS V+SL+VGDRV +   ++CG C  CK G   +C  +  
Sbjct: 49  TGAEPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNP 108

Query: 82  -------RFFGSPPTNGSLAHKVVHP-AKL-CYKLPDNVSLEEGAMCEPLS----VGVHA 128
                   +    P  G  A  +  P A     KLPD    +E      LS     G H 
Sbjct: 109 GRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHG 168

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
              A V P   V + G+GP+GL+   +A   GA R+ + D   +RL +A ++GA      
Sbjct: 169 LELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA------ 222

Query: 189 STDIEDVDTD-VGKIQNAMGSGIDVSFDCVGF-----------DKTMSTALNATRPGGKV 236
              I+  D D V +I      G+D + DCVG+           +  ++  +  TRPGG +
Sbjct: 223 -IPIDFSDGDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGI 281

Query: 237 CLIGLAKTEMTVALTPAAAR 256
            ++G+   E   A   AA +
Sbjct: 282 GIVGVYVAEDPGAGDAAAKQ 301

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  116 bits (293), Expect = 2e-30
 Identities = 79/246 (32%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPE 80
            K P+V GHE  G + EVG+ V+  +VGDRV    G+     SCG C  C+ G  NLC +
Sbjct: 51  SKYPLVPGHEIVGEVVEVGAGVEGRKVGDRV----GVGWLVGSCGRCEYCRRGLENLCQK 106

Query: 81  MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPET 138
               G   T G  A  +V  A+    LPD + L + A  +C  ++V   A R A   P  
Sbjct: 107 AVNTGY-TTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITV-YSALRDAGPRPGE 164

Query: 139 NVMIMGSGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIARNLGADETAKVSTDIEDVDT 197
            V ++G G +G + +  ARA G   + IT   D + L  AR LGADE             
Sbjct: 165 RVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKREL--ARKLGADEVV--------DSG 214

Query: 198 DVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL-AKTEMTVALTPAAAR 256
                Q A G G DV    V        AL   R GG++ L+GL      +  + P   +
Sbjct: 215 AELDEQAAAG-GADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMK 273

Query: 257 EVDVIG 262
              + G
Sbjct: 274 RQSIAG 279

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  116 bits (293), Expect = 3e-30
 Identities = 70/248 (28%), Positives = 104/248 (41%), Gaps = 54/248 (21%)

Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEM 81
           K P+V GHE  GI+  VGS+V   +VGDRV    G+     SCG C  CK+G    CP+ 
Sbjct: 52  KYPLVPGHEIVGIVVAVGSKVTKFKVGDRV----GVGCQVDSCGTCEQCKSGEEQYCPKG 107

Query: 82  RFFGSP------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MC------EPLSVGVH 127
               +        T G  A  +V   +  +K+P+ +     A  +C       PL     
Sbjct: 108 VVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPL----- 162

Query: 128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-------ARNL 180
             +R  VGP   V ++G G +G + +  A+A GA        +V   S        A  L
Sbjct: 163 --KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA--------EVTAFSRSPSKKEDALKL 212

Query: 181 GADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG 240
           GADE    + D E +    G         +D+  D V     +   L+  +PGG + L+G
Sbjct: 213 GADEFI-ATKDPEAMKKAAGS--------LDLIIDTVSASHDLDPYLSLLKPGGTLVLVG 263

Query: 241 LAKTEMTV 248
             +  + V
Sbjct: 264 APEEPLPV 271

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  117 bits (294), Expect = 4e-30
 Identities = 87/320 (27%), Positives = 133/320 (41%), Gaps = 46/320 (14%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGIS-CGHCSLCKAGSYNLCPEMRFFGS- 86
           P+++GHE AGI+E VG  V +L+ GD+V +   I  CG CS C++G  NLC + R   S 
Sbjct: 56  PVILGHEGAGIVESVGEGVTNLKPGDKV-IPLFIGQCGECSNCRSGKTNLCQKYRANESG 114

Query: 87  --PP----------------TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH- 127
             P                    + +   V       K+     LE   +   L  G   
Sbjct: 115 LMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCL---LGCGFST 171

Query: 128 ----ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 183
               A   A V P + V + G G +GL  ++ A+  GA RII  D++  +   A+  GA 
Sbjct: 172 GYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGAT 231

Query: 184 E---TAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLI 239
           +          + +V      I+   G G+D SF+C G    M+ AL +T+ G G   ++
Sbjct: 232 DFINPKDSDKPVSEV------IREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVV 285

Query: 240 GLAKTEM----TVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFT 295
           G+            L      +    G F+ RS  P  +    + K D+  LITH   F 
Sbjct: 286 GVPPGAELSIRPFQLILGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFE 345

Query: 296 QKEIEDAFEISAQGGNAIKV 315
             EI   F++  + G  I+ 
Sbjct: 346 --EINKGFDL-MKSGECIRT 362

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  116 bits (294), Expect = 5e-30
 Identities = 92/326 (28%), Positives = 135/326 (41%), Gaps = 67/326 (20%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---G 85
           P+++GHE AGI+E VG  V S++ GD V       CG C  CK+G  NLC ++R     G
Sbjct: 57  PVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKG 116

Query: 86  SPPTNGS--------LAH----------KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH 127
             P   S        + H           VV    +  K+     L++  +   L  GV 
Sbjct: 117 LMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVA-KINPEAPLDKVCL---LGCGVT 172

Query: 128 -----ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
                    A V P + V + G G +GL  +  A+A GA RII  D++  +  +A+  GA
Sbjct: 173 TGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGA 232

Query: 183 DET---AKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCL 238
            +          I+ V  ++         G+D +F+C+G  K M  AL A   G G   +
Sbjct: 233 TDCVNPKDHDKPIQQVLVEMTD------GGVDYTFECIGNVKVMRAALEACHKGWGTSVI 286

Query: 239 IGLAKTEMTVALTPAAAREVDV---------------IGIFRYRSTWPLCIEFLRSGKID 283
           IG+A          AA +E+                  G ++ RS  P  +E    GKI 
Sbjct: 287 IGVA----------AAGQEISTRPFQLVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIK 336

Query: 284 VKPLITHRFGFTQKEIEDAFEISAQG 309
           V   ITH       EI +AF++   G
Sbjct: 337 VDEFITHTMPL--DEINEAFDLMHAG 360

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score =  109 bits (274), Expect = 7e-30
 Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 19  MRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC 78
            R     VK P+++GHE AGI+EEVG  V  L+VGDRV + P I CG C+ C+ G  NLC
Sbjct: 21  YRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVVYPLIPCGKCAACREGRENLC 80

Query: 79  PEMRFFGSPPTNGSLAHKVVHPAKLCYKL 107
           P  +F G    +G  A  VV PA+    L
Sbjct: 81  PNGKFLGV-HLDGGFAEYVVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  115 bits (290), Expect = 9e-30
 Identities = 84/292 (28%), Positives = 128/292 (43%), Gaps = 34/292 (11%)

Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEM 81
           K P++ GHE AG++  VG  V  L+VGDRV    G+     +CG C  C+ G   LCP  
Sbjct: 55  KLPLIGGHEGAGVVVAVGPGVSGLKVGDRV----GVKWLYDACGKCEYCRTGDETLCPNQ 110

Query: 82  RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETN 139
           +  G    +G+ A   +  A+    +PD +S E+ A  +C  ++V   A ++A + P   
Sbjct: 111 KNSGY-TVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTV-YKALKKAGLKPGDW 168

Query: 140 VMIMGSGPIGLVTLLA---ARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVD 196
           V+I G+G  G +  L    A+A G  R+I  DV  ++L +A+ LGAD    V     D  
Sbjct: 169 VVISGAG--GGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAF--VDFKKSDDV 223

Query: 197 TDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPA-AA 255
             V ++    G G                AL+  RPGG +  +GL               
Sbjct: 224 EAVKEL--TGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVL 281

Query: 256 REVDVIGIFRYRSTW---PLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
           R + ++G      T       +EF   GK  VKP I        +++ + FE
Sbjct: 282 RGITIVG--SLVGTRQDLQEALEFAARGK--VKPHIQ-VVPL--EDLNEVFE 326

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  110 bits (276), Expect = 2e-27
 Identities = 89/320 (27%), Positives = 132/320 (41%), Gaps = 52/320 (16%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF---FG 85
           P ++GHE AGI+E VG  V  L+ GD V       C  C  CK+   N+C  +R     G
Sbjct: 57  PRILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRG 116

Query: 86  SPPTNGS---------LAH----------KVVHP---AKLCYKLP-DNVSLEEGAMCEPL 122
               +G          + H           VVH    AK+  + P D V L        L
Sbjct: 117 VMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCL--------L 168

Query: 123 SVGVH-----ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 177
           S GV      A   A V   + V I G G +GL     AR  GA RII  D++  +   A
Sbjct: 169 SCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQA 228

Query: 178 RNLGADETAKVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPG-GK 235
           +  G  E      + +D D  V ++   M G G+D SF+C G    M +A      G G 
Sbjct: 229 KKFGVTEF----VNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGV 284

Query: 236 VCLIGLAKTEMTVALTPA---AAREV--DVIGIFRYRSTWPLCIEFLRSGKIDVKPLITH 290
             L+G+   +   +  P      R +   + G ++ ++  P  +E     +++++  ITH
Sbjct: 285 TVLLGVPHKDAVFSTHPMNLLNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITH 344

Query: 291 RFGFTQKEIEDAFEISAQGG 310
              F   EI  AF++  +G 
Sbjct: 345 ELPF--SEINKAFDLLLKGE 362

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  103 bits (259), Expect = 2e-25
 Identities = 65/225 (28%), Positives = 98/225 (43%), Gaps = 31/225 (13%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           +K P+++GHE  G +EEVG  VK  + GDRVA       G C  C++G    C     +G
Sbjct: 52  MKYPVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYG 111

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP--LSVGVHACRRANVGPETNVMIM 143
               +G  A           K+P NVS +EGA+  P    +     RRA V     V++ 
Sbjct: 112 E-ELDGFFAEYAKVKVTSLVKVPPNVS-DEGAVIVPCVTGMVYRGLRRAGVKKGETVLVT 169

Query: 144 G-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIED--VDT--- 197
           G  G +G+  +  A+A GA  I +T              ++  AK+ +   D  +     
Sbjct: 170 GAGGGVGIHAIQVAKALGAKVIAVTS-------------SESKAKIVSKYADYVIVGSKF 216

Query: 198 --DVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG 240
             +V KI      G D+  + VG   T+  +L +   GGK+  IG
Sbjct: 217 SEEVKKI-----GGADIVIETVGTP-TLEESLRSLNMGGKIIQIG 255

Length = 334

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 97.8 bits (244), Expect = 3e-25
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 147 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM 206
            +GL  +  A+A GA R+I  D   ++L +A+ LGAD    ++   ED    V ++    
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHV--INYRDEDFVERVRELTG-- 56

Query: 207 GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVA-LTPAAAREVDVIGIFR 265
           G G+DV  DCVG   T+  AL   RPGG+V ++GL         L     +E+ ++G   
Sbjct: 57  GRGVDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLG 116

Query: 266 Y-RSTWPLCIEFL 277
             R  +   +E L
Sbjct: 117 GGREEFEEALELL 129

Length = 131

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  102 bits (255), Expect = 1e-24
 Identities = 86/313 (27%), Positives = 134/313 (42%), Gaps = 41/313 (13%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR------ 82
           P+++GHE AGI+E VG  V S++VGD V       CG C  C +G  NLC  +R      
Sbjct: 56  PVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKG 115

Query: 83  --------FF--GSPPTN----GSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGV 126
                   F   G P  +     + +   V P     K+     LEE  +  C  ++ G+
Sbjct: 116 LMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCG-VTTGI 174

Query: 127 HAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE- 184
            A    A V     V + G G IGL  +  AR   A RII  D++  +  +A+ LGA + 
Sbjct: 175 GAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDC 234

Query: 185 --TAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLIGL 241
                    I++V  ++         G+D SF+C+G    M  AL     G G+  +IG+
Sbjct: 235 VNPNDYDKPIQEVIVEITD------GGVDYSFECIGNVNVMRAALECCHKGWGESIIIGV 288

Query: 242 AKTEMTVALTPAAAREVDV-----IGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQ 296
           A     ++  P       V      G  + R+  P  +E    G+I +   +TH      
Sbjct: 289 AGAGQEISTRPFQLVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPL-- 346

Query: 297 KEIEDAFEISAQG 309
           ++I +AF++  +G
Sbjct: 347 EDINEAFDLMHEG 359

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  100 bits (252), Expect = 2e-24
 Identities = 85/306 (27%), Positives = 131/306 (42%), Gaps = 60/306 (19%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P V G E AG++E VG  V   +VGDRV                                
Sbjct: 58  PFVPGSEVAGVVEAVGEGVTGFKVGDRV---------------------------VALTG 90

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV--HAC-RRANVGPETNVMIMG- 144
             G  A +VV PA   + LPD +S EE A   P++ G   HA  RRA + P   V+++G 
Sbjct: 91  Q-GGFAEEVVVPAAAVFPLPDGLSFEEAA-ALPVTYGTAYHALVRRARLQPGETVLVLGA 148

Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
           +G +GL  +  A+A GA R+I      ++L++AR LGAD    +     D+   V  +  
Sbjct: 149 AGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHV--IDYRDPDLRERVKALTG 205

Query: 205 AMGSGIDVSFDCVG---FDKTMSTALNATRPGGKVCLIGLAKTEM-TVALTPAAAREVDV 260
             G G+DV +D VG   F+     +L +   GG++ +IG A  E+  +       + + V
Sbjct: 206 --GRGVDVVYDPVGGDVFEA----SLRSLAWGGRLLVIGFASGEIPQIPANLLLLKNISV 259

Query: 261 IGIF----------RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG 310
           +G++            R+      + L  GKI  +P ++  F   Q    +A    A   
Sbjct: 260 VGVYWGAYARREPELLRANLAELFDLLAEGKI--RPHVSAVFPLEQ--AAEALRALADRK 315

Query: 311 NAIKVM 316
              KV+
Sbjct: 316 ATGKVV 321

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score = 99.9 bits (249), Expect = 6e-24
 Identities = 87/310 (28%), Positives = 130/310 (41%), Gaps = 44/310 (14%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAG-------SYNLCPEM 81
           P ++GHE AG++E VG  V  +  GD V L     CG C  CK G       ++N   +M
Sbjct: 55  PFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKM 114

Query: 82  RFF-GSPPTN----GSLAHKVVHPAKLCYKL-PDNVSLEEGAMCEPLSVGVH-----ACR 130
               G+  +     G+ A K +  A  C K+ P      + A    L  GV      A  
Sbjct: 115 TLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPA----ADPAAAGLLGCGVMAGLGAAVN 170

Query: 131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 190
              V    +V ++G G +G   +  A   GA +II  D+D ++L  AR  GA  T   S 
Sbjct: 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSG 230

Query: 191 DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVAL 250
              D    +  +    G G DV  D VG  +T   A  A    G V L+G+   +MT+ L
Sbjct: 231 T--DPVEAIRALTG--GFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLEL 286

Query: 251 TPAAAREVDVIGI-FRYRSTW----------PLCIEFLRSGKIDVKPLITHRFGFTQKEI 299
            P     +DV G     +S+W          P+ ++    G++ +   +T R G     +
Sbjct: 287 -PL----LDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDD--V 339

Query: 300 EDAFEISAQG 309
           E+AF+    G
Sbjct: 340 EEAFDKMHAG 349

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 99.0 bits (247), Expect = 7e-24
 Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 20/215 (9%)

Query: 23  NFIVKKPM--VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE 80
           N +  KPM  + G E AG++EEVG  VK ++ GDRV +   +  G C +C +G+  LC  
Sbjct: 47  NAVKVKPMPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRN 106

Query: 81  MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV----HACRRANVGP 136
               G   +NG  A  +V P K  +K+PD++S E  A    L V      HA + A +GP
Sbjct: 107 GGIIGV-VSNGGYAEYIVVPEKNLFKIPDSISDELAA---SLPVAALTAYHALKTAGLGP 162

Query: 137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDV 195
              V++ G SG  G+  +  A+  GA  I ++     R    +  GADE        E V
Sbjct: 163 GETVVVFGASGNTGIFAVQLAKMMGAEVIAVS-----RKDWLKEFGADEVVDYDEVEEKV 217

Query: 196 DTDVGK---IQNAMGSGI-DVSFDCVGFDKTMSTA 226
                    + N++GS   D+S   +G    + T 
Sbjct: 218 KEITKMADVVINSLGSSFWDLSLSVLGRGGRLVTF 252

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 98.4 bits (246), Expect = 1e-23
 Identities = 71/224 (31%), Positives = 102/224 (45%), Gaps = 22/224 (9%)

Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP-GISCGHCSLCKAGSYNLCPEMRFFG 85
           K P++ GHE  G +E VG  V    VGDRV +   G +CG C  C++G  NLC   RF G
Sbjct: 57  KLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTG 116

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIM 143
               +G  A  +V   +  Y +P++   EE A  +C  + +G  A + A + P   + + 
Sbjct: 117 Y-TVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGI-IGYRALKLAGLKPGQRLGLY 174

Query: 144 GSGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
           G G    + L  AR  GA     T   + Q L  AR LGAD     S D+     D    
Sbjct: 175 GFGASAHLALQIARYQGAEVFAFTRSGEHQEL--ARELGADWAG-DSDDLPPEPLD---- 227

Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEM 246
                + I   F  VG    +  AL A + GG+V L G+  +++
Sbjct: 228 -----AAII--FAPVG--ALVPAALRAVKKGGRVVLAGIHMSDI 262

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score = 97.9 bits (244), Expect = 4e-23
 Identities = 91/318 (28%), Positives = 137/318 (43%), Gaps = 48/318 (15%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF----- 83
           P ++GHE AGI+E VG  V+ L+ GD V       CG C  CK    NLC   R      
Sbjct: 66  PRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKS 125

Query: 84  ---------FGSPPTNGSLAH----------KVVHPAKLC-YKLPDNVSLEEGAMCEPLS 123
                    F +      + H           V+  A  C  K+  N  L++  M   LS
Sbjct: 126 VMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSA--CVVKIDPNAPLKK--MSL-LS 180

Query: 124 VGVH-----ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 178
            GV      A   ANV   ++V I G G +GL     ARA GA +II  D++ ++    +
Sbjct: 181 CGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK 240

Query: 179 NLGADETAKVSTDIEDVDTDVGK-IQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKV 236
            +G  +      + +D D  V + I+   G G+D SF+C G  + +  A  +T  G G  
Sbjct: 241 EMGITDF----INPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLT 296

Query: 237 CLIGLAKTEMTVALTPAA---AREV--DVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHR 291
            L+G+  T   + L P      R +   V G F+ +S  P   +    G +++   ITH 
Sbjct: 297 VLLGIHPTPKMLPLHPMELFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHE 356

Query: 292 FGFTQKEIEDAFEISAQG 309
             F  ++I +AF++   G
Sbjct: 357 LPF--EKINEAFQLLEDG 372

Length = 381

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 96.1 bits (240), Expect = 9e-23
 Identities = 84/301 (27%), Positives = 130/301 (43%), Gaps = 34/301 (11%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           VK P++   + AG +  VG  V   +VGDRV   P            G      +     
Sbjct: 55  VKDPLIPLSDGAGEVVAVGEGVTRFKVGDRVV--PTFFPNW----LDGPPTA-EDEASAL 107

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA----CRRANVGPETNVM 141
             P +G LA  VV P +   + PD++S EE A   P + G+ A         + P   V+
Sbjct: 108 GGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAA-TLPCA-GLTAWNALFGLGPLKPGDTVL 165

Query: 142 IMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGK 201
           + G+G + L  L  A+A GA R+I T    ++L  A+ LGAD      T   D   +V K
Sbjct: 166 VQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRTT-PDWGEEVLK 223

Query: 202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG-LAKTEMTVALTPAAAREVDV 260
           +    G G+D   + VG   T++ ++ A  PGG + LIG L+  E  V L P   +   +
Sbjct: 224 LTG--GRGVDHVVE-VGGPGTLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATL 280

Query: 261 IGIF-----RYRSTWPLCIEFLRS-GKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIK 314
            GI      ++           R+     ++P+I   F F  +E ++A+     G +  K
Sbjct: 281 RGIAVGSRAQFE-------AMNRAIEAHRIRPVIDRVFPF--EEAKEAYRYLESGSHFGK 331

Query: 315 V 315
           V
Sbjct: 332 V 332

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 95.5 bits (238), Expect = 3e-22
 Identities = 84/318 (26%), Positives = 137/318 (43%), Gaps = 46/318 (14%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE--MRFFGS 86
           P++ GHE AG++ +VG  V  ++ GD V L    +CG C  C  G  NLC        GS
Sbjct: 56  PILGGHEGAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGS 115

Query: 87  PPTNGSLAHK-------------------VVHPAKLCYKLPDNVSLEEGAMCEPLSVGV- 126
             ++G+                       VV  A    K+ D++ L++  +   +  GV 
Sbjct: 116 QISDGTYRFHADGQDVGQMCLLGTFSEYTVVPEAS-VVKIDDDIPLDKACL---VGCGVP 171

Query: 127 ----HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
                A   A+V P   V++MG G +G+  +  A   GA ++I  D    +   A   GA
Sbjct: 172 TGWGSAVNIADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGA 231

Query: 183 DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDK--TMSTALNATRPGGKVCLIG 240
                    +E+    V ++ N  G G D +   VG      ++ AL+ATR GG+V + G
Sbjct: 232 THAF---ASMEEAVQLVRELTN--GQGADKTIITVGEVDGEHIAEALSATRKGGRVVVTG 286

Query: 241 LA---KTEMTVALTPAAAREVDVIG-IF---RYRSTWPLCIEFLRSGKIDVKPLITHRFG 293
           L      ++ V L      + ++ G +F     R+  P  +E  R+GK+ +  LIT    
Sbjct: 287 LGPMADVDVKVNLFELTLLQKELQGTLFGGANPRADIPRLLELYRAGKLKLDELITRT-- 344

Query: 294 FTQKEIEDAFEISAQGGN 311
           +T  +I + ++    G N
Sbjct: 345 YTLDQINEGYQDMLDGKN 362

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 95.5 bits (238), Expect = 3e-22
 Identities = 79/317 (24%), Positives = 132/317 (41%), Gaps = 39/317 (12%)

Query: 24  FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF 83
            +   P+++GHE AGI+E VG  V +++ GD+V       CG C  C     NLC +   
Sbjct: 56  LVTPFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDL 115

Query: 84  FGSPPT----------NGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL---------- 122
                            G   H  +  +    Y + D +++ +     PL          
Sbjct: 116 GKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGF 175

Query: 123 SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 181
           S G   A   A V P +   + G G +GL  ++  +A GA RII  D++  + + A+ LG
Sbjct: 176 STGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELG 235

Query: 182 ADETAK---VSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL 238
           A E          I++V      +      G+D SF+ +G   TM  AL +   G  V +
Sbjct: 236 ATECINPQDYKKPIQEV------LTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSV 289

Query: 239 I-GLAKTEMTVALTPA---AAREVD--VIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRF 292
           I G+  +   +++ P      R     V G ++ + + P  +    + K ++ PLITH  
Sbjct: 290 IVGVPPSSQNLSINPMLLLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTL 349

Query: 293 GFTQKEIEDAFEISAQG 309
            F +  I + F++   G
Sbjct: 350 PFEK--INEGFDLLRSG 364

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 94.0 bits (235), Expect = 4e-22
 Identities = 71/233 (30%), Positives = 100/233 (42%), Gaps = 51/233 (21%)

Query: 23  NFI----------VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKA 72
           NFI          +  P V+G E AG++E VG  V   +VGDRVA               
Sbjct: 39  NFIDTYFRSGLYPLPLPFVLGVEGAGVVEAVGPGVTGFKVGDRVA--------------- 83

Query: 73  GSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACR 130
                      +  PP  G+ A   V PA    KLPD +S E  A  + + L+       
Sbjct: 84  -----------YAGPP--GAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRE 130

Query: 131 RANVGPETNVMIMG-SGPIGLVTLLA--ARAFGAPRIIITDVDVQRLSIARNLGADETAK 187
              V P   V++   +G +GL  LL   A+A GA  +I T    ++  +AR  GAD    
Sbjct: 131 TYPVKPGDTVLVHAAAGGVGL--LLTQWAKALGA-TVIGTVSSEEKAELARAAGADHV-- 185

Query: 188 VSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG 240
           ++   ED    V +I    G G+DV +D VG D T   +L++ RP G +   G
Sbjct: 186 INYRDEDFVERVREITG--GRGVDVVYDGVGKD-TFEGSLDSLRPRGTLVSFG 235

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 93.4 bits (233), Expect = 7e-22
 Identities = 84/303 (27%), Positives = 122/303 (40%), Gaps = 55/303 (18%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P V G + AG++E VG  V  L+VGDRV L         +L                   
Sbjct: 58  PYVPGSDGAGVVEAVGEGVDGLKVGDRVWL--------TNLGWGRRQ------------- 96

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC-------RRANVGPETNVM 141
             G+ A  VV PA     LPD VS E+GA     ++G+ A         RA       V+
Sbjct: 97  --GTAAEYVVVPADQLVPLPDGVSFEQGA-----ALGIPALTAYRALFHRAGAKAGETVL 149

Query: 142 IMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVG 200
           + G SG +G   +  AR  GA R+I T    +   + R  GAD         ED+     
Sbjct: 150 VHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNYRA--EDL---AD 203

Query: 201 KIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVD 259
           +I  A  G G+DV  + V  +  ++  L+   PGG++ + G      T+ + P  A+E  
Sbjct: 204 RILAATAGQGVDVIIE-VLANVNLAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEAS 262

Query: 260 VIGIFRYRST---WPLCIE----FLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNA 312
           + G+  Y +T        E     L  G +  +P+I   +     E   A E    GG  
Sbjct: 263 IRGVLLYTATPEERAAAAEAIAAGLADGAL--RPVIAREYPLE--EAAAAHEAVESGGAI 318

Query: 313 IKV 315
            KV
Sbjct: 319 GKV 321

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 91.8 bits (228), Expect = 6e-21
 Identities = 81/276 (29%), Positives = 127/276 (46%), Gaps = 44/276 (15%)

Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           DQ M          +V+GHE  G + E G +V+ +++GD V++   I+CG C  CK G  
Sbjct: 49  DQHMVRGRTTAPTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHT 108

Query: 76  NLCPEMRFFGSPPTNGSL-------------AHKVVHPAK--LCYKLPD-NVSLEE---- 115
            +C  +    +P   G+              +  V+ P       K PD + +LE+    
Sbjct: 109 GVCLNV----NPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQALEKIRDL 164

Query: 116 GAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS 175
             + +    G H    A VGP + V I G+GP+GL    +A+  GA  +I+ D++  RL+
Sbjct: 165 TMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLA 224

Query: 176 IARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFD----------KTMS 224
            AR+ G  ET  +S D     T   +I+  +G   +D + DCVGF+          +  +
Sbjct: 225 QARSFGC-ETVDLSKD----ATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPA 279

Query: 225 TALNA----TRPGGKVCLIGLAKTEMTVALTPAAAR 256
           T LN+    TR GG + + GL  TE   A+  AA  
Sbjct: 280 TVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKT 315

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 90.3 bits (225), Expect = 1e-20
 Identities = 78/308 (25%), Positives = 112/308 (36%), Gaps = 64/308 (20%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P ++G + AG++E VG  V    VGD V    G                       G   
Sbjct: 58  PAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGG---------------------LGGLQ 96

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA----CRRANVGPETNVMIM- 143
             GSLA   V  A+L    P N+S+ E A   PL VG+ A      RA V     V+I  
Sbjct: 97  --GSLAEYAVVDARLLALKPANLSMREAA-ALPL-VGITAWEGLVDRAAVQAGQTVLIHG 152

Query: 144 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDV---DTDVG 200
           G+G +G V +  A+A GA   +      ++ + AR+LGAD        + +     T   
Sbjct: 153 GAGGVGHVAVQLAKAAGA--RVYATASSEKAAFARSLGADPIIYYRETVVEYVAEHTG-- 208

Query: 201 KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDV 260
                 G G DV FD VG + T+  +  A    G+V  I    T     L P + R    
Sbjct: 209 ------GRGFDVVFDTVGGE-TLDASFEAVALYGRVVSILGGATH---DLAPLSFRNATY 258

Query: 261 IGIF------------RYRSTWPLCIEFLRSGKIDVKPLI-THRFGFTQKEIEDAFEISA 307
            G+F             +          +  G++  +PL+    F     E   A     
Sbjct: 259 SGVFTLLPLLTGEGRAHHGEILREAARLVERGQL--RPLLDPRTFPLE--EAAAAHARLE 314

Query: 308 QGGNAIKV 315
            G    K+
Sbjct: 315 SGSARGKI 322

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 89.9 bits (224), Expect = 1e-20
 Identities = 76/298 (25%), Positives = 116/298 (38%), Gaps = 65/298 (21%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           +  P++ GH+ AG++  VG  V   +VGD V                           FG
Sbjct: 57  LTLPLIPGHDVAGVVVAVGPGVTGFKVGDEV---------------------------FG 89

Query: 86  SPPT--NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSV-----GVHACRRANVGPET 138
             P    G+ A  VV PA      P N+S EE A   PL+       +       +    
Sbjct: 90  MTPFTRGGAYAEYVVVPADELALKPANLSFEEAAAL-PLAGLTAWQALF--ELGGLKAGQ 146

Query: 139 NVMIMG-SGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVSTDIEDV 195
            V+I G +G +G   +  A+A GA R+I T    +   L   R+LGADE          +
Sbjct: 147 TVLIHGAAGGVGSFAVQLAKARGA-RVIATASAANADFL---RSLGADEV---------I 193

Query: 196 DTDVGKIQNA-MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA 254
           D   G  + A    G+D   D VG + T++ +L   +PGG++  I         A   A 
Sbjct: 194 DYTKGDFERAAAPGGVDAVLDTVGGE-TLARSLALVKPGGRLVSI----AGPPPAEQAAK 248

Query: 255 AREVDVIGIFRYRSTWPL--CIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG 310
            R V    +F       L    E + +GK+  +P++   F    ++  +A E    G 
Sbjct: 249 RRGVRAGFVFVEPDGEQLAELAELVEAGKL--RPVVDRVFPL--EDAAEAHERLESGH 302

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 90.3 bits (225), Expect = 1e-20
 Identities = 71/334 (21%), Positives = 119/334 (35%), Gaps = 66/334 (19%)

Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D   +   FI   P ++G + AG + EVGS V   +VGDRV        G          
Sbjct: 42  DWKHQDYGFIPSYPAILGCDFAGTVVEVGSGVTRFKVGDRV-------AGFV-------- 86

Query: 76  NLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA------------MCEPLS 123
                     + P NG+    VV  A L  K+PDN+S EE A            + + L 
Sbjct: 87  -----HGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLG 141

Query: 124 VGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
           + +   + +       V+I G S  +G + +  A+  G    +IT    +   + ++LGA
Sbjct: 142 LPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYK--VITTASPKNFDLVKSLGA 199

Query: 183 DETAKVSTDIEDVD----TDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL 238
           D            D      V  I+ A G  +  + DC+   ++      A    G   L
Sbjct: 200 DAV---------FDYHDPDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKL 250

Query: 239 IGLA------------KTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKP 286
           + L             K +  +  T       D      +    P   E L  GK+   P
Sbjct: 251 VSLLPVPEETEPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLP---ELLEEGKLKPHP 307

Query: 287 LITHRFGFTQKEIEDAFEISAQGG-NAIKVMFNL 319
           +     G   + +++  ++  +G  +  K++  L
Sbjct: 308 VRVVEGGL--EGVQEGLDLLRKGKVSGEKLVVRL 339

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 89.4 bits (223), Expect = 2e-20
 Identities = 85/311 (27%), Positives = 123/311 (39%), Gaps = 73/311 (23%)

Query: 31  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN 90
           ++G E AG++  VG  V   +VGDRV          C+L   G Y               
Sbjct: 60  ILGLEVAGVVVAVGPGVTGWKVGDRV----------CALLAGGGY--------------- 94

Query: 91  GSLAHKVVHPAKLCYKLPDNVSLEEGA-MCEPLSVGVHA-CRRANVGPETNVMIMG--SG 146
              A  VV PA     +P+ +SL E A + E          +   +     V+I G  SG
Sbjct: 95  ---AEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASG 151

Query: 147 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM 206
            +G   +  A+A GA R+I T    ++L   R LGAD    ++   ED   +V +     
Sbjct: 152 -VGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVA--INYRTEDFAEEVKEATG-- 205

Query: 207 GSGIDVSFDCVG---FDKTMSTALNATRPGGKVCLIGL---AKTEMTVALTPAAAREVDV 260
           G G+DV  D VG     +     L A  P G++ LIGL   AK E  + L P   + + +
Sbjct: 206 GRGVDVILDMVGGDYLARN----LRALAPDGRLVLIGLLGGAKAE--LDLAPLLRKRLTL 259

Query: 261 IG-IFRYRST--------------WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI 305
            G   R RS               WPL      SG+I  +P+I   F     E  +A   
Sbjct: 260 TGSTLRSRSLEEKAALAAAFREHVWPL----FASGRI--RPVIDKVFPLE--EAAEAHRR 311

Query: 306 SAQGGNAIKVM 316
                +  K++
Sbjct: 312 MESNEHIGKIV 322

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 81/290 (27%), Positives = 134/290 (46%), Gaps = 30/290 (10%)

Query: 31  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRFFGSPPT 89
           ++GHE  GI++EVG  V SL+VGDRV++      CGHC  C  G   LC  ++  G    
Sbjct: 56  ILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGY-TV 114

Query: 90  NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV---HACRRANVGPETNVMIMGSG 146
           +G +A + +  A    K+P+   L+          GV    A + + + P   + I G+G
Sbjct: 115 DGGMAEQCIVTADYAVKVPEG--LDPAQASSITCAGVTTYKAIKVSGIKPGQWIAIYGAG 172

Query: 147 PIG-LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVD----TDVGK 201
            +G L    A   F A ++I  D++  +L++A+ +GAD T   S  +EDV        G 
Sbjct: 173 GLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTIN-SKRVEDVAKIIQEKTGG 230

Query: 202 IQNAMGSGI-DVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDV 260
              A+ + +   +F+          A++A R GG+V  +GL    M +++       ++V
Sbjct: 231 AHAAVVTAVAKAAFN---------QAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEV 281

Query: 261 IG-IFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG 309
           +G +   R       +F   GK  V P +  R     ++I D F+   QG
Sbjct: 282 VGSLVGTRQDLEEAFQFGAEGK--VVPKVQLR---PLEDINDIFDEMEQG 326

Length = 338

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 84.6 bits (210), Expect = 1e-18
 Identities = 62/218 (28%), Positives = 88/218 (40%), Gaps = 36/218 (16%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P  +G+E AG++E VG+ V    VGDRV++ P                            
Sbjct: 58  PARLGYEAAGVVEAVGAGVTGFAVGDRVSVIP-----------------------AADLG 94

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC--RRANVGPETNVMIMG-S 145
             G+ A   + PA    KLPD +S  E A      +  +      A + P  +V+I   S
Sbjct: 95  QYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAAS 154

Query: 146 GPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
             +GL  +  A A GA  I  T        L     LGA     + TD ED+  +V +I 
Sbjct: 155 SSVGLAAIQIANAAGATVIATTRTSEKRDAL---LALGAAHV--IVTDEEDLVAEVLRIT 209

Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL 241
              G G+DV FD VG     +   +A  PGG + + G 
Sbjct: 210 G--GKGVDVVFDPVG-GPQFAKLADALAPGGTLVVYGA 244

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 61/245 (24%), Positives = 91/245 (37%), Gaps = 38/245 (15%)

Query: 30  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI---SCGHCSLCKAGSYNLCPEMRFF-- 84
           +V+GHE  G++EEVG     L  GD V           G C  C+ G  + C    +   
Sbjct: 59  LVLGHEALGVVEEVGDG-SGLSPGDLVV---PTVRRPPGKCLNCRIGRPDFCETGEYTER 114

Query: 85  GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA-------CRRANVGPE 137
           G    +G +    V   +   K+P +++ + G + EPLSV   A        +R      
Sbjct: 115 GIKGLHGFMREYFVDDPEYLVKVPPSLA-DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNP 173

Query: 138 TNVMIMGSGPIGLVTLLAARAFGAPRIII--TDVDVQRLSIARNLGADETAKVSTDIEDV 195
              +++G+GPIGL+  L  R  G    ++   D    +  I   LGA       T + +V
Sbjct: 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEV 233

Query: 196 DTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAA 255
                          D+  +  G       AL A  P G V L G           P   
Sbjct: 234 KLVG---------EFDLIIEATGVPPLAFEALPALAPNGVVILFG----------VPGGG 274

Query: 256 REVDV 260
           RE +V
Sbjct: 275 REFEV 279

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 81.1 bits (200), Expect = 2e-17
 Identities = 70/294 (23%), Positives = 125/294 (42%), Gaps = 29/294 (9%)

Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
             P+ +GHE +G + + G+   S  +G  V +   I CG C LCK G   +C   +  G+
Sbjct: 52  ALPLALGHEISGRVIQAGAGAASW-IGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGN 110

Query: 87  PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM--------CEPLSVGVHACRRANVGPET 138
               G  +H VV    LC  + D   L    +         + ++    A  +A +    
Sbjct: 111 DMQGGFASHIVVPAKGLC--VVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQAGLKKGD 168

Query: 139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA----KVSTDIED 194
            V+++G+G +G   +  A+A GA  + I D+D ++L + +  GAD T     K + +++ 
Sbjct: 169 LVIVIGAGGVGGYMVQTAKAMGAAVVAI-DIDPEKLEMMKGFGADLTLNPKDKSAREVKK 227

Query: 195 VDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA 254
           +     K +    +G  + F+C G      +AL+    GG + ++G    +    L+   
Sbjct: 228 LIKAFAKARGLRSTGWKI-FECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLSNLM 286

Query: 255 AREVDVIGIF-----RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAF 303
           A     +G +     RY +   L +     GKI + P +  R      +IE  F
Sbjct: 287 AFHARALGNWGCPPDRYPAALDLVL----DGKIQLGPFVERR---PLDQIEHVF 333

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 80.0 bits (198), Expect = 4e-17
 Identities = 77/303 (25%), Positives = 113/303 (37%), Gaps = 62/303 (20%)

Query: 24  FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF 83
                P + G + AG +  VGS V   +VGD V                  +   P    
Sbjct: 54  LGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEV------------------FGRLPPKGG 95

Query: 84  FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC----RRANVGPETN 139
                  G+LA  VV P     K P+ VS EE A   P++ G+ A         V P   
Sbjct: 96  -------GALAEYVVAPESGLAKKPEGVSFEEAA-ALPVA-GLTALQALRDAGKVKPGQR 146

Query: 140 VMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGADETAKVSTDIEDVDT 197
           V+I G SG +G   +  A+A GA    +T V   R   + R+LGADE   +    ED   
Sbjct: 147 VLINGASGGVGTFAVQIAKALGA---HVTGVCSTRNAELVRSLGADEV--IDYTTEDFVA 201

Query: 198 DVGKIQNAMGSGIDVSFDCVGFDK-TMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAR 256
                    G   DV FD VG    ++  A  A +PGG+   +G   + + + L      
Sbjct: 202 LTAG-----GEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLT 256

Query: 257 EVDVIGIFRYRSTWPLCI----------EFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS 306
               +G    R  + L            E +  GK+  KP+I   +    ++  +A+   
Sbjct: 257 ----LGGGGRRLKFFLAKPNAEDLEQLAELVEEGKL--KPVIDSVYPL--EDAPEAYRRL 308

Query: 307 AQG 309
             G
Sbjct: 309 KSG 311

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score = 80.3 bits (198), Expect = 6e-17
 Identities = 84/316 (26%), Positives = 132/316 (41%), Gaps = 47/316 (14%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM------- 81
           P + GHE +GI+E +G  V   E GD V       CG C  C +G  N+C  +       
Sbjct: 64  PRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGV 123

Query: 82  -------RFF--GSP-----PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH 127
                  RF   G P       +    + VVH +    K+     L +  +   LS GV 
Sbjct: 124 MHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVH-SGCAVKVDPLAPLHKICL---LSCGVA 179

Query: 128 A-----CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
           A        A+V   ++V+I G G +GL     A+  GA +II  D++ ++   A+  G 
Sbjct: 180 AGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV 239

Query: 183 DE---TAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCL 238
            +      +S  I+ V      I+   G G D SF+CVG     +TAL +   G G    
Sbjct: 240 TDFINPNDLSEPIQQV------IKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVT 293

Query: 239 IGLAKTEMTVA-----LTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFG 293
           +G+ K +  V+            +  + G ++ +S  P  ++   + +I +   ITH   
Sbjct: 294 LGVPKAKPEVSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLS 353

Query: 294 FTQKEIEDAFEISAQG 309
           F   EI  AFE+  +G
Sbjct: 354 F--DEINKAFELMREG 367

Length = 378

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 78.7 bits (194), Expect = 7e-17
 Identities = 63/253 (24%), Positives = 99/253 (39%), Gaps = 24/253 (9%)

Query: 31  VIGHECAGIIEEVGSEV------KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF 84
           V+GHE  G +  +            L +G RV     + CG C  C+ G    C  +R +
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY 60

Query: 85  GSPPTN------GSLAHKVVHPAKL-CYKLPDNV--SLEEGAMCEPLSVGVHACRRANVG 135
           G    +      G  A     PA      +PD++  ++   A C   +V + A   A   
Sbjct: 61  GHEALDSGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATV-MAALEAAGDL 119

Query: 136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDV 195
               V+++G+G +GL    AA A GA R++  D    R  +A + GA   A+      +V
Sbjct: 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAE-----PEV 174

Query: 196 DTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAA 255
             +        G G+DV+ +  G    +   L +   GG   L G       VAL P   
Sbjct: 175 LAERQGGLQN-GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQV 233

Query: 256 --REVDVIGIFRY 266
             R + + G+  Y
Sbjct: 234 VRRWLTIRGVHNY 246

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 78.8 bits (194), Expect = 2e-16
 Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 22/235 (9%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI---SCGHCSLCKAGSYNLCPEMRF-- 83
           P+V GHE  GI+ ++G  VK  + GDRV +  G+   SC  C  C     N CP+M F  
Sbjct: 67  PIVPGHEIVGIVTKLGKNVKKFKEGDRVGV--GVIVGSCKSCESCDQDLENYCPKMIFTY 124

Query: 84  --FGSPPTN--GSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPE 137
              G   T   G  +  +V       + PDN+ L+ GA  +C  ++V           P 
Sbjct: 125 NSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPG 184

Query: 138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDT 197
            ++ + G G +G V +   +AFG    +I+    +       LGAD           V T
Sbjct: 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFL--------VST 236

Query: 198 DVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTP 252
           D  K++ A+G+ +D   D V     +   L   +  GK+  +GL +  + + + P
Sbjct: 237 DPEKMKAAIGT-MDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFP 290

Length = 360

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 67/287 (23%), Positives = 112/287 (39%), Gaps = 33/287 (11%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALE-PGISCGHCSLCKAGSYNLCPEMRFFGSP 87
           P V GHE  G I+ VG  V   +VGDRV +   G  CG C  C+ G +  C   +  G  
Sbjct: 55  PRVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVT 114

Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGS 145
              G   + +     L  ++PD++   E A  +C  ++   +A R +   P   V + G 
Sbjct: 115 RDGGYAEYMLAPAEALA-RIPDDLDAAEAAPLLCAGVTT-FNALRNSGAKPGDLVAVQGI 172

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
           G +G + +  A   G  R +       +  +AR LGA         I+    DV +    
Sbjct: 173 GGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHY------IDTSKEDVAEALQE 225

Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFR 265
           +G G  +        K +S  +    P GK+ ++G A   + V+          + G   
Sbjct: 226 LG-GAKLILATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHG--- 281

Query: 266 YRSTWPL--------CIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
               WP          ++F  S    V+P++   F   +    +A++
Sbjct: 282 ----WPSGTALDSEDTLKF--SALHGVRPMV-ETFPLEK--ANEAYD 319

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 77.3 bits (191), Expect = 4e-16
 Identities = 69/310 (22%), Positives = 113/310 (36%), Gaps = 63/310 (20%)

Query: 28  KPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 87
            P V G+E  G++ EVGS V  L VG RV                               
Sbjct: 56  LPAVPGNEGVGVVVEVGSGVSGLLVGQRVLP----------------------------L 87

Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC--EPLSVGVHACRRANVGPETNVMIM-- 143
              G+    VV PA     +PD++S E+ AM    PL+  +         P  + +I   
Sbjct: 88  GGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWL-MLTEYLKLPPGDWVIQNA 146

Query: 144 -GSGPIG--LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVG 200
             S  +G  L+ L     F    ++  D  V+ L   + LGADE   + +  ED+   V 
Sbjct: 147 ANSA-VGRMLIQLAKLLGFKTINVVRRDEQVEEL---KALGADE--VIDSSPEDLAQRVK 200

Query: 201 KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDV 260
           +     G+G  ++ D VG +   +    + RPGG +   GL   E       +     D+
Sbjct: 201 EATG--GAGARLALDAVGGESA-TRLARSLRPGGTLVNYGLLSGEPVP-FPRSVFIFKDI 256

Query: 261 -IGIF--------RYRSTWPLC----IEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA 307
            +  F          +          I+ + +G +     +  +F    ++ E+A   + 
Sbjct: 257 TVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVL--TTPVGAKFPL--EDFEEAVAAAE 312

Query: 308 QGGNAIKVMF 317
           Q G   KV+ 
Sbjct: 313 QPGRGGKVLL 322

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 76.9 bits (190), Expect = 6e-16
 Identities = 77/306 (25%), Positives = 122/306 (39%), Gaps = 63/306 (20%)

Query: 31  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN 90
           ++G E AG +  VG  V   +VGDRV          C+L   G Y               
Sbjct: 60  ILGLEVAGEVVAVGEGVSRWKVGDRV----------CALVAGGGY--------------- 94

Query: 91  GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP---LSVGVHACRRANVGPETNVMIM-GSG 146
              A  V  PA     +P+ +SL E A   P    +V  +  +R  +     V+I  G+ 
Sbjct: 95  ---AEYVAVPAGQVLPVPEGLSLVEAAAL-PETFFTVWSNLFQRGGLKAGETVLIHGGAS 150

Query: 147 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM 206
            IG   +  A+AFGA R+  T    ++ +    LGAD  A    + + V  +V K +   
Sbjct: 151 GIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGAD-IAINYREEDFV--EVVKAETG- 205

Query: 207 GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK-TEMTVALTPAAAREVDVIG-IF 264
           G G+DV  D VG    ++  + A    G++  IG     +  + L P  A+ + + G   
Sbjct: 206 GKGVDVILDIVGGS-YLNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGSTL 264

Query: 265 RYRST--------------WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG 310
           R R                WPL    L SG++  +P+I   F    ++   A  +   G 
Sbjct: 265 RARPVAEKAAIAAELREHVWPL----LASGRV--RPVIDKVFPL--EDAAQAHALMESGD 316

Query: 311 NAIKVM 316
           +  K++
Sbjct: 317 HIGKIV 322

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 73.4 bits (181), Expect = 6e-15
 Identities = 68/311 (21%), Positives = 111/311 (35%), Gaps = 71/311 (22%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
              +G EC+GI+  VGS V  L+VGDRV    G++                         
Sbjct: 28  ETPLGLECSGIVTRVGSGVTGLKVGDRVM---GLA------------------------- 59

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC-------RRANVGPETNVM 141
             G+ A  V   A+L  K+PD++S EE A     ++ V            A +    +V+
Sbjct: 60  -PGAFATHVRVDARLVVKIPDSLSFEEAA-----TLPVAYLTAYYALVDLARLQKGESVL 113

Query: 142 IM-GSGPIGLVTLLAARAFGAPRIIIT---DVDVQRLSIARNLGADETAKVSTDIEDVDT 197
           I   +G +G   +  A+  GA  +  T   +   + L   R LG       S+       
Sbjct: 114 IHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFL---RELGGPVDHIFSSRDLSFAD 169

Query: 198 DVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT--------EMTVA 249
            + +     G G+DV  + +   + +  +     P G+   + + K          M   
Sbjct: 170 GILRATG--GRGVDVVLNSLS-GELLRASWRCLAPFGR--FVEIGKRDILSNSKLGMRPF 224

Query: 250 LTPAAAREVDVIGIFRYR-----STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
           L   +   VD+  + R R           +E L +G +  KPL             DAF 
Sbjct: 225 LRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVL--KPLPPTVVPSA--SEIDAFR 280

Query: 305 ISAQGGNAIKV 315
           +   G +  KV
Sbjct: 281 LMQSGKHIGKV 291

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 73.7 bits (181), Expect = 1e-14
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 20/226 (8%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRFFG-- 85
           PMV GHE  G + EVGS+V    VGD V +   +  CG CS CK+     C + R +   
Sbjct: 64  PMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNK-RIWSYN 122

Query: 86  -----SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPET 138
                  PT G  A  +V   K   K+P+ ++ E+ A  +C  ++V              
Sbjct: 123 DVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGL 182

Query: 139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD 198
              I+G G +G + +  A+A G    +I+  D +R     +LGAD+          V +D
Sbjct: 183 RGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYL--------VSSD 234

Query: 199 VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT 244
             ++Q A  S +D   D V     +   L+  +  GK+ L+G+  T
Sbjct: 235 AAEMQEAADS-LDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT 279

Length = 357

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 70.7 bits (174), Expect = 9e-14
 Identities = 76/310 (24%), Positives = 120/310 (38%), Gaps = 81/310 (26%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+ +G +C+G++ ++GS VKS E+GD V                           +G+ P
Sbjct: 74  PLTLGRDCSGVVVDIGSGVKSFEIGDEV---------------------------WGAVP 106

Query: 89  --TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC-------RRANVGPET- 138
             + G+ A  VV P     K P N+S EE A     S+                + P+  
Sbjct: 107 PWSQGTHAEYVVVPENEVSKKPKNLSHEEAA-----SLPYAGLTAWSALVNVGGLNPKNA 161

Query: 139 ---NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK-VSTDIE 193
               V+I+G SG +G   +   +A+GA   + T      + + ++LGAD+     + D E
Sbjct: 162 AGKRVLILGGSGGVGTFAIQLLKAWGA--HVTTTCSTDAIPLVKSLGADDVIDYNNEDFE 219

Query: 194 DVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG---LAKTE----M 246
           +  T+ GK         DV  D VG D     AL   + GG    +    L  T+    +
Sbjct: 220 EELTERGK--------FDVILDTVGGDTE-KWALKLLKKGGTYVTLVSPLLKNTDKLGLV 270

Query: 247 TVALTPAAAREVDVIGIFRYRST--W------PLCIEFLR----SGKIDVKPLITHRFGF 294
              L  A       +      S   W         ++ L      GKI  KP+I   F F
Sbjct: 271 GGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKI--KPVIDKVFPF 328

Query: 295 TQKEIEDAFE 304
             +E+ +A+E
Sbjct: 329 --EEVPEAYE 336

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 68.2 bits (168), Expect = 4e-13
 Identities = 76/325 (23%), Positives = 120/325 (36%), Gaps = 100/325 (30%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
             V+G ECAG++  VG  V  L VGDRV    G+                          
Sbjct: 23  EAVLGGECAGVVTRVGPGVTGLAVGDRVM---GL-------------------------- 53

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV------HA-CRRANVGPETNVM 141
             G+ A +VV  A+L   +PD  S EE A     +V V      +A    A + P  +V+
Sbjct: 54  APGAFATRVVTDARLVVPIPDGWSFEEAA-----TVPVVFLTAYYALVDLARLRPGESVL 108

Query: 142 I-MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST---------- 190
           I   +G +G     AA                 + +AR+LGA+  A   +          
Sbjct: 109 IHAAAGGVG----QAA-----------------IQLARHLGAEVFATAGSPEKRDFLRAL 147

Query: 191 --DIEDV----DTD-VGKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
               + +    D     +I  A  G G+DV  + +  +   ++ L    PGG+   + + 
Sbjct: 148 GIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLSGEFLDAS-LRCLAPGGR--FVEIG 204

Query: 243 KTEM----TVALTPAAA----REVDVIGIF----RYRSTWPLCIEFLRSGKIDVKPLITH 290
           K ++     +A+ P         VD+  +     R R      +E    G +  +PL   
Sbjct: 205 KRDIRDNSQLAMAPFRPNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVL--RPLPVT 262

Query: 291 RFGFTQKEIEDAFEISAQGGNAIKV 315
            F  +  + EDAF    QG +  KV
Sbjct: 263 VFPIS--DAEDAFRYMQQGKHIGKV 285

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 68.0 bits (167), Expect = 7e-13
 Identities = 56/228 (24%), Positives = 85/228 (37%), Gaps = 54/228 (23%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
            K P V G ECAG +E VG  VK  +VGDRV            L + G Y          
Sbjct: 54  PKPPFVPGFECAGTVEAVGEGVKDFKVGDRVM----------GLTRFGGY---------- 93

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA----CRRANVGPETNVM 141
                   A  V  PA   + LPD +S EE A        + A        N+ P  +V+
Sbjct: 94  --------AEVVNVPADQVFPLPDGMSFEEAAAF--PVNYLTAYYALFELGNLRPGQSVL 143

Query: 142 I-MGSGPIGLVTLLAARAFGAPRIIITDVDV------QRLSIARNLGADETAKVSTDIED 194
           +   +G +GL      +        + +V V       +    +  G        T  +D
Sbjct: 144 VHSAAGGVGLAAGQLCKT-------VPNVTVVGTASASKHEALKENGVTHVIDYRT--QD 194

Query: 195 VDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
              +V KI      G+D+  D +G + T   + +  +P G++ + G A
Sbjct: 195 YVEEVKKIS---PEGVDIVLDALGGEDT-RKSYDLLKPMGRLVVYGAA 238

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 56/166 (33%), Positives = 79/166 (47%), Gaps = 17/166 (10%)

Query: 26  VKKPMVI-GHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCP 79
           V +P V  GHE  G +   G++     VGDRV    GI     +CG C  C+ G+ NLCP
Sbjct: 53  VHRPRVTPGHEVVGEVAGRGADAGGFAVGDRV----GIAWLRRTCGVCRYCRRGAENLCP 108

Query: 80  EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPE 137
             R+ G   T+G  A     PA   Y+LP      E A  +C  + +G  A  RA++ P 
Sbjct: 109 ASRYTGW-DTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGI-IGYRALLRASLPPG 166

Query: 138 TNVMIMGSGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIARNLGA 182
             + + G G    +T   A A GA   ++T     +RL++A  LGA
Sbjct: 167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA--LGA 210

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 36/200 (18%)

Query: 20  RCANFIVKKPMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLC 78
           +  N + K+P+++GHE AG I +VG + +   + G R  ++P +       C   SY   
Sbjct: 54  KVPNDLAKEPVILGHEFAGTILKVGKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYP 113

Query: 79  PEMRFFGSPPTNGSLAHKVVHPAKL----CYKLPDNVSLEEGAMCEPLS--VG-VHACRR 131
                       G LA   + P ++    C  + +     E ++ EPLS  +G   A   
Sbjct: 114 ------------GGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYH 161

Query: 132 ANVGPETNVM----------IMGSGPIGLVTLLAARAFGAP----RIIITDVDVQRLSIA 177
              G   + M          + G+GP+GL+ +    A   P     +++TDV+ +RL+ A
Sbjct: 162 LQPGEYRHRMGIKPGGNTAILGGAGPMGLMAI--DYAIHGPIGPSLLVVTDVNDERLARA 219

Query: 178 RNLGADETAKVSTDIEDVDT 197
           + L   E A    ++  V+ 
Sbjct: 220 QRLFPPEAASRGIELLYVNP 239

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 51/215 (23%), Positives = 79/215 (36%), Gaps = 22/215 (10%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P + G +  G +  VG  V +  +G+RV ++P I             +   ++ + GS  
Sbjct: 78  PRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIR--------DPPEDDPADIDYIGS-E 128

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEE-GAMCEPLSVGVHACRRANVGPETNVMIMG-SG 146
            +G  A   V PA+  Y +   +S  E        S   +   RA VG    V++ G SG
Sbjct: 129 RDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENMLERAGVGAGETVLVTGASG 188

Query: 147 PIGLVTL-LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
            +G   + LA R       +      + +   R LGAD               +   +  
Sbjct: 189 GVGSALVQLAKRRGAIVIAVAGAAKEEAV---RALGADTVILRDAP------LLADAKAL 239

Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG 240
            G  +DV  D VG        L   RPGG+    G
Sbjct: 240 GGEPVDVVADVVG-GPLFPDLLRLLRPGGRYVTAG 273

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176199 cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 76/293 (25%), Positives = 121/293 (41%), Gaps = 39/293 (13%)

Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
           K PM + HE  GI   V     + +VG +V + P        +      N  P  RF  S
Sbjct: 57  KLPMALIHE--GIGVVVSDPTGTYKVGTKVVMVPNTPVEKDEIIPE---NYLPSSRFRSS 111

Query: 87  PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRAN---VGPETNVMIM 143
              +G +   V  P     KLPDNV  E  A  E +SVGVHA  R           + + 
Sbjct: 112 G-YDGFMQDYVFLPPDRLVKLPDNVDPEVAAFTELVSVGVHAISRFEQIAHKDRNVIGVW 170

Query: 144 GSGPIGLVTLLAAR-AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
           G G +G +T L  +  +   ++++     ++L       ADET  +    ED+       
Sbjct: 171 GDGNLGYITALLLKQIYPESKLVVFGKHQEKL--DLFSFADETYLIDDIPEDL------- 221

Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNA----TRPGGKVCLIGLAKTEMTVALTPAAARE- 257
                  +D +F+CVG   + S A+N      RP G + L+G+  +E  V +      E 
Sbjct: 222 ------AVDHAFECVGGRGSQS-AINQIIDYIRPQGTIGLMGV--SEYPVPINTRMVLEK 272

Query: 258 -VDVIGIFRY-RSTWPLCIEFL-RSGKI--DVKPLITHRFGFTQ-KEIEDAFE 304
            + ++G  R  R  +   +E L R+ ++   ++ L+   F      +I  AFE
Sbjct: 273 GLTLVGSSRSTREDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFE 325

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 341

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 23/240 (9%)

Query: 25  IVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRF 83
             + P++ GHE  GI  +VG  V   + GDRV +   I SC  C  C     N CP++ F
Sbjct: 57  FSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVF 116

Query: 84  -FGSPPTNGS-----LAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVG 135
            + S  ++G+      +  +V   +    +PD +  + GA  +C  ++V     +   + 
Sbjct: 117 TYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITV-YSPMKYYGMT 175

Query: 136 PET--NVMIMGSGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIARNLGADETAKVSTDI 192
            E+   + + G G +G + +   +AFG    +I+   + +R +I R LGAD         
Sbjct: 176 KESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-LGADSFL------ 228

Query: 193 EDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTP 252
             V TD  K++ A+G+ +D   D V  +  +    +  +  GK+  +GL +  + + + P
Sbjct: 229 --VTTDSQKMKEAVGT-MDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFP 285

Length = 375

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 31  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN 90
           + G + +GI+  VG  VK+ +VGD V +   +  G+      G     P  R +G     
Sbjct: 84  IGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNY 143

Query: 91  GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR------ANVGPETNVMIMG 144
           GS A   +  A      P ++S EE A    L VG  A R         V P  NV+I G
Sbjct: 144 GSFAQFALVQATQLMPKPKHLSWEEAA-AYML-VGATAYRMLFGWNPNTVKPGDNVLIWG 201

Query: 145 -SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
            SG +G + +  ARA GA  + +   + ++    R LGA
Sbjct: 202 ASGGLGSMAIQLARAAGANPVAVVSSE-EKAEYCRALGA 239

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 24/167 (14%)

Query: 31  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSL-------CKAGSYNLCPEMRF 83
           +IG + +G++  VG  V   +VGD V          C          + G   L  E R 
Sbjct: 80  IIGSDASGVVWRVGPGVTRWKVGDEVVA-------SCLQVDLTAPDGRDGDPMLSSEQRI 132

Query: 84  FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR------ANVGPE 137
           +G     GS A   +         P +++ EE A C  L  G  A R+      A V P 
Sbjct: 133 WGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAA-CPGL-TGATAYRQLVGWNPAAVKPG 190

Query: 138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 183
            NV+I G +G +G      ARA G   + +     ++    R+LGA+
Sbjct: 191 DNVLIWGAAGGLGSYATQLARAGGGNPVAVVS-SPEKAEYCRSLGAE 236

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 61/222 (27%), Positives = 88/222 (39%), Gaps = 42/222 (18%)

Query: 26  VKKPMVIGHECAGIIEEV-GSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM-RF 83
           VK P V+G E  G +EE  G        G RVA   G                   M R 
Sbjct: 54  VKFPRVLGIEAVGEVEEAPGGT---FTPGQRVATAMG------------------GMGRT 92

Query: 84  FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEE-GAMCEPLSVGVHACRRA-NVGPETNVM 141
           F     +GS A   + P +  Y +  ++S  E  A+ E       +  R+  + P   ++
Sbjct: 93  F-----DGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLL 147

Query: 142 IMG--SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDV 199
           I G  S  +GL  L  A+A G   +  T    +R ++ + LGADE   V  D   +   +
Sbjct: 148 IRGGTSS-VGLAALKLAKALG-ATVTATTRSPERAALLKELGADE---VVIDDGAIAEQL 202

Query: 200 GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL 241
                    G D   + VG   T+  +L   RPGG VC+ GL
Sbjct: 203 RAA----PGGFDKVLELVG-TATLKDSLRHLRPGGIVCMTGL 239

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 59/241 (24%), Positives = 86/241 (35%), Gaps = 39/241 (16%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P V G E AG+++ VG  V    +G RV    G                           
Sbjct: 60  PYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTGR-------------------------- 93

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC---RRANVGPETNVMIMG- 144
             G  A   V      + +PD + LE       +  G  A      A + P   V++   
Sbjct: 94  AGGGYAELAVADVDSLHPVPDGLDLEAAVAV--VHDGRTALGLLDLATLTPGDVVLVTAA 151

Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
           +G +G + +  A+A GA  +        + ++ R LGAD    V+ D    D      + 
Sbjct: 152 AGGLGSLLVQLAKAAGATVVGAAGGPA-KTALVRALGAD----VAVDYTRPDWPDQVREA 206

Query: 205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMT-VALTPAAAREVDVIGI 263
             G G+ V  D VG       AL    PGG+    G A  E T +    A  R V V+G+
Sbjct: 207 LGGGGVTVVLDGVGGA-IGRAALALLAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGL 265

Query: 264 F 264
            
Sbjct: 266 L 266

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 60/224 (26%), Positives = 82/224 (36%), Gaps = 52/224 (23%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P   G++  G ++ +GS V   EVGDRVA          +L + G               
Sbjct: 58  PFTPGYDLVGRVDALGSGVTGFEVGDRVA----------ALTRVGGN------------- 94

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC----RRANVGPETNVMIMG 144
                A  +   AK    +P+ V   E A+C  L   V A     R A V     V+I G
Sbjct: 95  -----AEYINLDAKYLVPVPEGVDAAE-AVCLVL-NYVTAYQMLHRAAKVLTGQRVLIHG 147

Query: 145 -SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA---DETAKVSTDIEDVDTDVG 200
            SG +G   L  A   GA  +  T    +  +  R LGA   D   K   D        G
Sbjct: 148 ASGGVGQALLELALLAGA-EVYGT-ASERNHAALRELGATPIDYRTK---DWLPAMLTPG 202

Query: 201 KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT 244
                   G+DV FD VG + +   +  A  PGG +   G   +
Sbjct: 203 --------GVDVVFDGVGGE-SYEESYAALAPGGTLVCYGGNSS 237

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 38/195 (19%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P V G + AG++  VG++V   +VGDRVA        H SL +                 
Sbjct: 57  PHVPGVDGAGVVVAVGAKVTGWKVGDRVAY-------HASLAR----------------- 92

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGVHACRRANVGPETNVMIMG-S 145
             GS A   V  A+    LPD++S EE A   C  L+      ++  +     ++I G +
Sbjct: 93  -GGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGA 151

Query: 146 GPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
           G +G   +  A+  G  R+I T    + + +   ++LGAD    +  + EDV   + +I 
Sbjct: 152 GGVGSFAVQLAKRAGL-RVITTCSKRNFEYV---KSLGADHV--IDYNDEDVCERIKEIT 205

Query: 204 NAMGSGIDVSFDCVG 218
              G G+D   D VG
Sbjct: 206 G--GRGVDAVLDTVG 218

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 50/211 (23%), Positives = 78/211 (36%), Gaps = 38/211 (18%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P   G E +G++  VG  V  L VGD V    G                           
Sbjct: 38  PFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG--------------------------E 71

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG---VHACRRANVGPETNVMIM-G 144
           + G  A  V  P     + P ++S EE   C    V    + A  RA +    +++I   
Sbjct: 72  SMGGHATLVTVPEDQVVRKPASLSFEEA--CALPVVFLTVIDAFARAGLAKGEHILIQTA 129

Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
           +G  GL+ +  AR  GA  I  T     +L   + LG           ED + ++ ++  
Sbjct: 130 TGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE--EDFEEEIMRLTG 186

Query: 205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGK 235
             G G+DV  + +  +  +   LN   PGG+
Sbjct: 187 --GRGVDVVINTLSGE-AIQKGLNCLAPGGR 214

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|222256 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 19/136 (13%)

Query: 180 LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI 239
           LGADE       I+    D    +   G G+DV  D VG + T+  AL A +PGG++  I
Sbjct: 1   LGADEV------IDYTTEDF--EEATAGEGVDVVLDTVGGE-TLLRALLALKPGGRLVSI 51

Query: 240 GLAKTEMTVALTPAAAREVDVIGIFRYRSTWPL-----CIEFLRSGKIDVKPLITHRFGF 294
           G     ++VA   A  R V  + +F               E + +GK+  +P+I   F  
Sbjct: 52  GGPDLLLSVAAK-AGGRGVRGVFLFPVSPGEAGADLAELAELVEAGKL--RPVIDRVFPL 108

Query: 295 TQKEIEDAFEISAQGG 310
              E  +A      G 
Sbjct: 109 E--EAAEAHRYLESGR 122

Length = 129

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 56/244 (22%), Positives = 91/244 (37%), Gaps = 48/244 (19%)

Query: 31  VIGHECAGIIEEVGSEVKSLEVGDRV-ALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPT 89
           ++G E AG +E+VGS+VK  + GDRV AL PG           G Y              
Sbjct: 61  ILGLEVAGYVEDVGSDVKRFKEGDRVMALLPG-----------GGY-------------- 95

Query: 90  NGSLAHKVVHPAKLCYKLPDNVSLEE-GAMCEPLSVGVHACRR-ANVGPETNVMIM--GS 145
               A   V        +P   + EE  A+ E         ++  +V    +V+I    S
Sbjct: 96  ----AEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGAS 151

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
           G +G      A  +GA  II T  + +++   + L A        D E     V   +  
Sbjct: 152 G-VGTAAAQLAEKYGAATIITTSSE-EKVDFCKKLAA-IILIRYPDEEGFAPKV--KKLT 206

Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFR 265
              G+++  DCVG    +S         GK  + G         +  A   + +++ + R
Sbjct: 207 GEKGVNLVLDCVG-GSYLSETAEVLAVDGKWIVYGF--------MGGAKVEKFNLLPLLR 257

Query: 266 YRST 269
            R++
Sbjct: 258 KRAS 261

Length = 334

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 35/195 (17%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P  +G E AG++ +VGS VK ++VGDRV           +    G+Y             
Sbjct: 58  PSGLGTEAAGVVSKVGSGVKHIKVGDRVVY---------AQSALGAY------------- 95

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRAN--VGP-ETNVMIMGS 145
              S  H V  PA     LPD +S E+ A      + V+   R    + P E  +    +
Sbjct: 96  ---SSVHNV--PADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAA 150

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
           G +GL+    A+A GA ++I T    Q+   A+  GA +        E++   V +I   
Sbjct: 151 GGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVINYRE--ENIVERVKEITG- 206

Query: 206 MGSGIDVSFDCVGFD 220
            G  + V +D VG D
Sbjct: 207 -GKKVRVVYDSVGKD 220

Length = 327

>gnl|CDD|130269 TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 60/290 (20%), Positives = 98/290 (33%), Gaps = 61/290 (21%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+V G+E  G + E G +      GDRV +              GS         FG   
Sbjct: 59  PLVPGYESVGRVVEAGPDTGFR-PGDRVFV-------------PGSNCYEDVRGLFGGA- 103

Query: 89  TNGSLAHKVVHPA-KLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNV---MIMG 144
                + ++V PA ++C      +    G     L++   A R A  G E  V   +I+G
Sbjct: 104 -----SKRLVTPASRVC-----RLDPALGPQGALLALAATA-RHAVAGAEVKVLPDLIVG 152

Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
            G +G +     +A G     + + + +R   A             ++ D + D  +   
Sbjct: 153 HGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA----------TGYEVLDPEKDPRR--- 199

Query: 205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIF 264
                    +D  G    + T +     GG++ L G     +     PA  +E       
Sbjct: 200 ----DYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMKEAR----L 251

Query: 265 RYRSTWP-----LCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG 309
           R  + W         E + SG + +  LITH     Q+   DA E     
Sbjct: 252 RIAAEWQPGDLHAVRELIESGALSLDGLITH-----QRPASDAAEAYMTA 296

[Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 308

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 30/101 (29%)

Query: 27  KKPMVIGHECAGIIEEVG-SEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
             P+  G E +G +   G   +    +G RVA              AGSY          
Sbjct: 59  ALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVA------------FLAGSY---------- 96

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC--EPLSV 124
                G+ A   V  A+ C  LPD VS E+GA     PL+ 
Sbjct: 97  -----GTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTA 132

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 70/313 (22%), Positives = 115/313 (36%), Gaps = 61/313 (19%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P V G+E  G + +VGS VKSL+ GD V                               P
Sbjct: 64  PAVGGNEGVGEVVKVGSGVKSLKPGDWVIP---------------------------LRP 96

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR-----ANVGPETNVMIM 143
             G+     V PA    K+P++V  E+ A    LSV      R       + P   V+  
Sbjct: 97  GLGTWRTHAVVPADDLIKVPNDVDPEQAAT---LSVNPCTAYRLLEDFVKLQPGDWVIQN 153

Query: 144 G-SGPIGLVTLLAARAFGAPRIII------TDVDVQRLSIARNLGADETAKVSTDIEDVD 196
           G +  +G   +  A+  G   I +       +   +RL   + LGAD           + 
Sbjct: 154 GANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERL---KALGADHVLTEEELRSLLA 210

Query: 197 TDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK-VCLIGLAKTEMTVALTPAAA 255
           T++ K  +A G    ++ +CVG  K+ +       PGG  V   G++   +TV  +    
Sbjct: 211 TELLK--SAPGGRPKLALNCVG-GKSATELARLLSPGGTMVTYGGMSGQPVTVPTSLLIF 267

Query: 256 REVDVIGIF-------RYRSTWPLCIEFL----RSGKIDVKPLITHRFGFTQKEIEDAFE 304
           +++ + G +                +E L    R GK+   P +        +E +DA  
Sbjct: 268 KDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKL-KAPPVEKVTDDPLEEFKDALA 326

Query: 305 ISAQGGNAIKVMF 317
            + +GG   K + 
Sbjct: 327 NALKGGGGGKQVL 339

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 52/196 (26%), Positives = 70/196 (35%), Gaps = 41/196 (20%)

Query: 28  KPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 87
            P + G E  G+++ VG  VK L+VG RVA                              
Sbjct: 58  LPAIGGSEAVGVVDAVGEGVKGLQVGQRVA-------------------------VAPVH 92

Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGVHACRRANVGP-ETNVMIMG 144
              G+ A   V PA     LPD +S E  A     PLS  +       V P +  +    
Sbjct: 93  ---GTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLS-ALMLLDFLGVKPGQWLIQNAA 148

Query: 145 SGPIG--LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
            G +G  +  L AAR      ++  D  V  L   R LG      VST+       V + 
Sbjct: 149 GGAVGKLVAMLAAARGINVINLVRRDAGVAEL---RALGIGPV--VSTEQPGWQDKVREA 203

Query: 203 QNAMGSGIDVSFDCVG 218
               G+ I V+ D VG
Sbjct: 204 AG--GAPISVALDSVG 217

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 76/314 (24%), Positives = 130/314 (41%), Gaps = 71/314 (22%)

Query: 28  KPMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
           K   +G + +G+I +VGS V S  +VGD V                G Y        +G 
Sbjct: 58  KEKGLGRDYSGVIVKVGSNVASEWKVGDEV---------------CGIY-----PHPYGG 97

Query: 87  PPTNGSLAHK-VVHPAKLCYKL---PDNVSLEEGAMCEPLSVG-----VHACRRANVGPE 137
               G+L+   +V P K    +   P+N+SLEE A   PL +G     +    +  +GP+
Sbjct: 98  ---QGTLSQYLLVDPKKDKKSITRKPENISLEEAA-AWPLVLGTAYQILEDLGQ-KLGPD 152

Query: 138 TNVMIMGSG-PIGLVTL-LAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVSTDIED 194
           + V+++G    +G   + LA   +    ++ T    +   + + LGAD      +     
Sbjct: 153 SKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGT-CSSRSAELNKKLGADHFIDYDAHSGVK 211

Query: 195 VDTDVGKIQNAMGSG-IDVSFDCVG---FDKTMSTALNATRPGGK-VCLIGLAK---TEM 246
           +   V  ++N  G G  D+  DCVG       +++ L      G  V ++G  K    + 
Sbjct: 212 LLKPV--LENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKD 269

Query: 247 TVALTP---AAAREV-DVIGI--FRYR-------STWP-LCIEFLRSGKIDVKPLI--TH 290
           T        A AR++   +G+  + Y+       + W   C E +  GK  VKP I   +
Sbjct: 270 TFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGK--VKPPIDSVY 327

Query: 291 RFGFTQKEIEDAFE 304
            F    ++ ++AFE
Sbjct: 328 PF----EDYKEAFE 337

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 60/267 (22%), Positives = 90/267 (33%), Gaps = 81/267 (30%)

Query: 25  IVKK-PMVIGHECAGIIEEVGSEVKSLEVGDRVALEP-GISCGHCSLCKAGSYNLCPEMR 82
           +V+  PM+ G + AG +    SE      GD V +   G+   H                
Sbjct: 52  VVRSYPMIPGIDAAGTVVS--SEDPRFREGDEVIVTGYGLGVSH---------------- 93

Query: 83  FFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEG----------AMCEPLSVGVHACRRA 132
                  +G  +     PA     LP+ +SL E           A+       V A  R 
Sbjct: 94  -------DGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALS------VMALERN 140

Query: 133 NVGPETNVMIMGSGPIGLVT------------LLAARAFGAPRIIITDVDVQRLSIARNL 180
            + PE        GP+ LVT            +L+   +    ++ +    +     + L
Sbjct: 141 GLTPE-------DGPV-LVTGATGGVGSLAVAILSKLGY---EVVASTGKAEEEDYLKEL 189

Query: 181 GADETAKVSTDIEDVDTDVGKIQNAMGSGI-DVSFDCVGFDKTMSTALNATRPGGKVCLI 239
           GA E      D ED+    GK    +       + D VG   T++  L   + GG V   
Sbjct: 190 GASEV----IDREDLS-PPGK---PLEKERWAGAVDTVG-GHTLANVLAQLKYGGAVAAC 240

Query: 240 GLA---KTEMTVALTPAAAREVDVIGI 263
           GLA       TV   P   R V ++GI
Sbjct: 241 GLAGGPDLPTTVL--PFILRGVSLLGI 265

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	100.0
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.98
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.98
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.98
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.98
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.98
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.97
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.97
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.97
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.97
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.97
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.97
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.97
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.97
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.97
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.97
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.97
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.97
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.97
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.97
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.96
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.95
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.94
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.87
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.73
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.46
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.44
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.34
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.64
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.64
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.48
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.37
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.31
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.28
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.21
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.2
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	98.13
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.13
PLN02494	477	adenosylhomocysteinase	97.99
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.85
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.84
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.82
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.82
PRK08324	681	short chain dehydrogenase; Validated	97.8
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.72
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.69
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.68
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.62
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.6
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.55
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.52
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.49
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.49
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.48
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.48
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.47
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.45
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.36
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.3
PRK14967	223	putative methyltransferase; Provisional	97.3
PRK05993	277	short chain dehydrogenase; Provisional	97.28
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.27
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.18
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.16
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.14
PRK06182	273	short chain dehydrogenase; Validated	97.11
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.11
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.04
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.01
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.93
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	96.93
TIGR00438	188	rrmJ cell division protein FtsJ.	96.9
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.85
PRK12742	237	oxidoreductase; Provisional	96.81
PRK08017	256	oxidoreductase; Provisional	96.81
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	96.79
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.79
PRK07402	196	precorrin-6B methylase; Provisional	96.76
PRK12828	239	short chain dehydrogenase; Provisional	96.74
PRK00811	283	spermidine synthase; Provisional	96.7
PRK05693	274	short chain dehydrogenase; Provisional	96.7
PRK04457	262	spermidine synthase; Provisional	96.68
PRK08265	261	short chain dehydrogenase; Provisional	96.63
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.63
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	96.56
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.56
PRK12939	250	short chain dehydrogenase; Provisional	96.56
PRK06057	255	short chain dehydrogenase; Provisional	96.55
PRK07326	237	short chain dehydrogenase; Provisional	96.55
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.54
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.54
PRK06139	330	short chain dehydrogenase; Provisional	96.53
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.5
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.48
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.48
PRK06949	258	short chain dehydrogenase; Provisional	96.47
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.47
PRK08267	260	short chain dehydrogenase; Provisional	96.46
PRK04148	134	hypothetical protein; Provisional	96.45
PLN03209	576	translocon at the inner envelope of chloroplast su	96.45
PRK07806	248	short chain dehydrogenase; Provisional	96.44
PRK07109	334	short chain dehydrogenase; Provisional	96.41
PRK08339	263	short chain dehydrogenase; Provisional	96.39
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.35
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.33
PRK00536	262	speE spermidine synthase; Provisional	96.33
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.32
PLN02366	308	spermidine synthase	96.32
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.32
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	96.31
PLN02823	336	spermine synthase	96.3
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.29
PRK07814	263	short chain dehydrogenase; Provisional	96.27
PRK07060	245	short chain dehydrogenase; Provisional	96.25
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.24
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.23
PRK01581	374	speE spermidine synthase; Validated	96.22
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.22
PRK07825	273	short chain dehydrogenase; Provisional	96.21
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.21
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.2
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.2
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.19
PRK05866	293	short chain dehydrogenase; Provisional	96.18
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.16
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.16
PRK08177	225	short chain dehydrogenase; Provisional	96.16
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.15
PRK06484	520	short chain dehydrogenase; Validated	96.14
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.14
PRK07574	385	formate dehydrogenase; Provisional	96.14
PRK11207	197	tellurite resistance protein TehB; Provisional	96.13
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.13
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	96.12
PRK08618	325	ornithine cyclodeaminase; Validated	96.11
PRK05872	296	short chain dehydrogenase; Provisional	96.1
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.07
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.06
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.06
PRK08317	241	hypothetical protein; Provisional	96.05
PRK07677	252	short chain dehydrogenase; Provisional	96.03
PLN02244	340	tocopherol O-methyltransferase	96.03
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.03
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.02
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	96.02
PRK07832	272	short chain dehydrogenase; Provisional	96.02
PRK07831	262	short chain dehydrogenase; Provisional	96.02
PRK09186	256	flagellin modification protein A; Provisional	96.01
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.0
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.99
PRK06128	300	oxidoreductase; Provisional	95.98
PRK08862	227	short chain dehydrogenase; Provisional	95.98
PRK06180	277	short chain dehydrogenase; Provisional	95.96
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.96
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.96
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.95
PLN03139	386	formate dehydrogenase; Provisional	95.95
PRK05867	253	short chain dehydrogenase; Provisional	95.95
PRK06841	255	short chain dehydrogenase; Provisional	95.91
PLN02233	261	ubiquinone biosynthesis methyltransferase	95.91
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.89
PRK12829	264	short chain dehydrogenase; Provisional	95.87
PRK06398	258	aldose dehydrogenase; Validated	95.86
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.86
PRK13255	218	thiopurine S-methyltransferase; Reviewed	95.84
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.83
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	95.83
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.81
PRK07062	265	short chain dehydrogenase; Provisional	95.81
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.8
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	95.79
PRK08628	258	short chain dehydrogenase; Provisional	95.79
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.78
PRK06500	249	short chain dehydrogenase; Provisional	95.78
COG4122	219	Predicted O-methyltransferase [General function pr	95.77
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	95.75
PLN03075	296	nicotianamine synthase; Provisional	95.75
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	95.75
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.73
PRK08703	239	short chain dehydrogenase; Provisional	95.73
PRK06196	315	oxidoreductase; Provisional	95.71
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.7
KOG0725	270	consensus Reductases with broad range of substrate	95.69
PRK07774	250	short chain dehydrogenase; Provisional	95.69
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.69
PRK09072	263	short chain dehydrogenase; Provisional	95.67
KOG1252	362	consensus Cystathionine beta-synthase and related	95.65
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.64
PRK08643	256	acetoin reductase; Validated	95.64
PRK08589	272	short chain dehydrogenase; Validated	95.63
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.63
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	95.62
PRK12937	245	short chain dehydrogenase; Provisional	95.61
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	95.59
PRK06198	260	short chain dehydrogenase; Provisional	95.58
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	95.58
PRK07024	257	short chain dehydrogenase; Provisional	95.57
PRK04266	226	fibrillarin; Provisional	95.57
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.56
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.56
PRK07478	254	short chain dehydrogenase; Provisional	95.56
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.55
PRK07454	241	short chain dehydrogenase; Provisional	95.55
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.53
PRK06483	236	dihydromonapterin reductase; Provisional	95.53
PRK06194	287	hypothetical protein; Provisional	95.52
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	95.52
KOG3201	201	consensus Uncharacterized conserved protein [Funct	95.51
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.5
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	95.5
PRK05717	255	oxidoreductase; Validated	95.49
PLN02780	320	ketoreductase/ oxidoreductase	95.49
PRK13243	333	glyoxylate reductase; Reviewed	95.48
PRK07576	264	short chain dehydrogenase; Provisional	95.47
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.46
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.46
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.45
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.45
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.45
PRK06953	222	short chain dehydrogenase; Provisional	95.44
PRK06179	270	short chain dehydrogenase; Provisional	95.41
CHL00194	317	ycf39 Ycf39; Provisional	95.41
PRK12747	252	short chain dehydrogenase; Provisional	95.4
PRK06172	253	short chain dehydrogenase; Provisional	95.39
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	95.38
PRK05854	313	short chain dehydrogenase; Provisional	95.37
PRK07985	294	oxidoreductase; Provisional	95.36
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	95.35
COG2910	211	Putative NADH-flavin reductase [General function p	95.33
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	95.33
PRK07063	260	short chain dehydrogenase; Provisional	95.33
PRK07035	252	short chain dehydrogenase; Provisional	95.32
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.32
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.31
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.31
PRK06138	252	short chain dehydrogenase; Provisional	95.3
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.3
PLN03013	429	cysteine synthase	95.29
PRK06701	290	short chain dehydrogenase; Provisional	95.29
PRK03612	521	spermidine synthase; Provisional	95.29
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.29
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.29
PRK07340	304	ornithine cyclodeaminase; Validated	95.28
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	95.28
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.26
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.26
PRK06940	275	short chain dehydrogenase; Provisional	95.26
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.24
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.23
PRK07890	258	short chain dehydrogenase; Provisional	95.22
PRK05875	276	short chain dehydrogenase; Provisional	95.21
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.21
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.19
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	95.18
PRK08226	263	short chain dehydrogenase; Provisional	95.16
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.15
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.15
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.14
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.13
PLN02253	280	xanthoxin dehydrogenase	95.12
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.11
PRK11761	296	cysM cysteine synthase B; Provisional	95.1
PRK09291	257	short chain dehydrogenase; Provisional	95.1
PRK12746	254	short chain dehydrogenase; Provisional	95.1
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.09
PRK09242	257	tropinone reductase; Provisional	95.08
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	95.08
PLN02476	278	O-methyltransferase	95.07
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	95.05
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.03
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.03
PLN02928	347	oxidoreductase family protein	95.02
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.02
PRK06197	306	short chain dehydrogenase; Provisional	95.0
PRK07067	257	sorbitol dehydrogenase; Provisional	94.99
PRK05876	275	short chain dehydrogenase; Provisional	94.99
PRK14901	434	16S rRNA methyltransferase B; Provisional	94.99
PRK07856	252	short chain dehydrogenase; Provisional	94.97
PRK06720	169	hypothetical protein; Provisional	94.97
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	94.95
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	94.94
PRK06114	254	short chain dehydrogenase; Provisional	94.92
PRK06181	263	short chain dehydrogenase; Provisional	94.88
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	94.87
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.85
PRK07904	253	short chain dehydrogenase; Provisional	94.85
PRK06914	280	short chain dehydrogenase; Provisional	94.84
PRK06482	276	short chain dehydrogenase; Provisional	94.84
PRK08328	231	hypothetical protein; Provisional	94.83
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.83
PRK08251	248	short chain dehydrogenase; Provisional	94.82
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.8
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	94.8
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	94.79
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	94.77
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.74
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.74
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	94.74
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.73
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	94.72
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	94.71
PRK08263	275	short chain dehydrogenase; Provisional	94.71
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.7
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.68
PRK12743	256	oxidoreductase; Provisional	94.67
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.66
PRK12938	246	acetyacetyl-CoA reductase; Provisional	94.66
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	94.65
PRK06101	240	short chain dehydrogenase; Provisional	94.64
PRK06125	259	short chain dehydrogenase; Provisional	94.63
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.63
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.61
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.6
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.6
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.58
PRK07074	257	short chain dehydrogenase; Provisional	94.57
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	94.55
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.54
PRK06523	260	short chain dehydrogenase; Provisional	94.53
PRK12480	330	D-lactate dehydrogenase; Provisional	94.51
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	94.48
PRK08264	238	short chain dehydrogenase; Validated	94.47
PRK06124	256	gluconate 5-dehydrogenase; Provisional	94.47
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	94.46
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	94.45
PRK10258	251	biotin biosynthesis protein BioC; Provisional	94.42
PRK10669	558	putative cation:proton antiport protein; Provision	94.41
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.39
PRK10538	248	malonic semialdehyde reductase; Provisional	94.39
PLN02336	475	phosphoethanolamine N-methyltransferase	94.38
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.38
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.38
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	94.37
PRK05884	223	short chain dehydrogenase; Provisional	94.37
PRK06484	520	short chain dehydrogenase; Validated	94.35
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.35
PRK12367	245	short chain dehydrogenase; Provisional	94.31
PRK12335	287	tellurite resistance protein TehB; Provisional	94.3
PRK07069	251	short chain dehydrogenase; Validated	94.3
PRK07097	265	gluconate 5-dehydrogenase; Provisional	94.29
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	94.25
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	94.25
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	94.24
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	94.24
PRK06436	303	glycerate dehydrogenase; Provisional	94.23
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.23
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	94.22
PRK07775	274	short chain dehydrogenase; Provisional	94.2
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.2
PRK08303	305	short chain dehydrogenase; Provisional	94.19
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	94.18
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.16
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	94.16
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	94.13
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.11
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.1
PRK14904	445	16S rRNA methyltransferase B; Provisional	94.09
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	94.07
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.07
PRK10901	427	16S rRNA methyltransferase B; Provisional	94.06
PRK07791	286	short chain dehydrogenase; Provisional	94.06
PLN00203	519	glutamyl-tRNA reductase	94.04
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	94.04
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	94.01
PRK09134	258	short chain dehydrogenase; Provisional	94.01
PRK07417	279	arogenate dehydrogenase; Reviewed	93.98
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	93.97
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	93.93
PRK14968	188	putative methyltransferase; Provisional	93.92
PRK05650	270	short chain dehydrogenase; Provisional	93.9
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	93.88
PRK14902	444	16S rRNA methyltransferase B; Provisional	93.87
PRK07577	234	short chain dehydrogenase; Provisional	93.87
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	93.86
PRK13256	226	thiopurine S-methyltransferase; Reviewed	93.83
PRK06932	314	glycerate dehydrogenase; Provisional	93.83
PLN02490	340	MPBQ/MSBQ methyltransferase	93.8
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	93.8
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.78
PRK06141	314	ornithine cyclodeaminase; Validated	93.76
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	93.71
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	93.69
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	93.67
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.65
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.65
PRK08936	261	glucose-1-dehydrogenase; Provisional	93.65
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	93.62
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	93.62
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	93.62
PTZ00146	293	fibrillarin; Provisional	93.6
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	93.59
PRK05855	582	short chain dehydrogenase; Validated	93.58
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	93.56
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	93.56
PLN02589	247	caffeoyl-CoA O-methyltransferase	93.53
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	93.49
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.49

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=7.4e-60  Score=390.54  Aligned_cols=314  Identities=49%  Similarity=0.897  Sum_probs=286.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |+++++|||+||+|++.+++.+.+..+.|.++|||.+|+|.++|++|+++++||||+..|..+|+.|..|++|+|++|++
T Consensus        34 v~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~  113 (354)
T KOG0024|consen   34 VAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPH  113 (354)
T ss_pred             EEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcccccccccCCeEEecCCCccccchhhhCcccccCCc
Confidence            57899999999999999988888888999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      +.|...++.+|++++|+..+++.++++|+++|+|++|++.|++++|||.+++++++|.+|||+|+|++|+.++..||.+|
T Consensus       114 m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G  193 (354)
T KOG0024|consen  114 MVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG  193 (354)
T ss_pred             cccccCCCcCCceEEEEEechHheeeCCCCCchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhh-hcC-CCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN-AMG-SGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~-~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      +++|++++..++|+++++++|++.+....... . ...+.++.+ ..+ ..+|+.|||.|..-.++.++..++.+|+++.
T Consensus       194 A~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~-~-~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vl  271 (354)
T KOG0024|consen  194 ASDVVITDLVANRLELAKKFGATVTDPSSHKS-S-PQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVL  271 (354)
T ss_pred             CCcEEEeecCHHHHHHHHHhCCeEEeeccccc-c-HHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEE
Confidence            99999999999999999999999887643322 1 222222222 222 4599999999998889999999999999999


Q ss_pred             ecccCCcccccchHHHhcCcEEEEeeccCC-CHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC-CceEEE
Q 020928          239 IGLAKTEMTVALTPAAAREVDVIGIFRYRS-TWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG-NAIKVM  316 (319)
Q Consensus       239 ~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~gkvv  316 (319)
                      .++.....+++......+++++.|++.+.. .+..+++++.+|+++++++++++|++  +++.+||+.+..++ ..-|++
T Consensus       272 vg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~~ai~li~sGki~~k~lIT~r~~~--~~~~eAf~~~~~~~~~~iKv~  349 (354)
T KOG0024|consen  272 VGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYPTAIELVSSGKIDVKPLITHRYKF--DDADEAFETLQHGEEGVIKVI  349 (354)
T ss_pred             eccCCCccccChhhhhhheeeeeeeeeeccccHHHHHHHHHcCCcCchhheeccccc--chHHHHHHHHHhCcCCceEEE
Confidence            999888889999999999999999999955 99999999999999999999999999  99999999988774 355887


Q ss_pred             Ee
Q 020928          317 FN  318 (319)
Q Consensus       317 i~  318 (319)
                      +.
T Consensus       350 i~  351 (354)
T KOG0024|consen  350 IT  351 (354)
T ss_pred             Ee
Confidence            74

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.2e-56  Score=383.07  Aligned_cols=300  Identities=31%  Similarity=0.494  Sum_probs=266.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEE-ccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVAL-EPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~-~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||+|||+|++|+|..+|.-..   ..+|+|+|||.+|+|+++|++|++|++||||.. ....+|++|.||.+|..++|+
T Consensus        33 I~v~~~GVChsDlH~~~G~~~~---~~~P~ipGHEivG~V~~vG~~V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~  109 (339)
T COG1064          33 IKVEACGVCHTDLHVAKGDWPV---PKLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCP  109 (339)
T ss_pred             EEEEEEeecchhhhhhcCCCCC---CCCCccCCcceEEEEEEecCCCccCCCCCEEEecCccCCCCCCccccCcccccCC
Confidence            6899999999999999985422   348999999999999999999999999999987 788899999999999999999


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      ...+.+. +.+|+|+||+++++.+++++|+++++++||.+. ...|+|++|++.+++||++|+|.|.|++|++++|+|+.
T Consensus       110 ~~~~~gy-~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka  188 (339)
T COG1064         110 NQKITGY-TTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKA  188 (339)
T ss_pred             Cccccce-eecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeehhhcCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence            8666655 489999999999999999999999999999886 56789999999999999999999999999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      +|+ +|++++++++++++++++|++++++..  ++++.+.+++       .+|+++|+++ +..+...++.|+++|+++.
T Consensus       189 ~ga-~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~~-------~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~  257 (339)
T COG1064         189 MGA-EVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVKE-------IADAIIDTVG-PATLEPSLKALRRGGTLVL  257 (339)
T ss_pred             cCC-eEEEEeCChHHHHHHHHhCCcEEEEcC--CchhhHHhHh-------hCcEEEECCC-hhhHHHHHHHHhcCCEEEE
Confidence            997 899999999999999999999998743  4454444332       2999999999 7799999999999999999


Q ss_pred             ecccC-Cc-ccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEE
Q 020928          239 IGLAK-TE-MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKV  315 (319)
Q Consensus       239 ~g~~~-~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  315 (319)
                      +|... .+ ..++...++.+++++.|+... ..++++++++..+|++  +|.+.+.+++  +++++|++.|++++..|+.
T Consensus       258 vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~I--kp~i~e~~~l--~~in~A~~~m~~g~v~gR~  333 (339)
T COG1064         258 VGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKI--KPEILETIPL--DEINEAYERMEKGKVRGRA  333 (339)
T ss_pred             ECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCc--eeeEEeeECH--HHHHHHHHHHHcCCeeeEE
Confidence            99874 33 346677788999999999987 7789999999999999  5555467888  9999999999999999999


Q ss_pred             EEeC
Q 020928          316 MFNL  319 (319)
Q Consensus       316 vi~~  319 (319)
                      |+++
T Consensus       334 Vi~~  337 (339)
T COG1064         334 VIDM  337 (339)
T ss_pred             EecC
Confidence            9863

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-51  Score=365.57  Aligned_cols=308  Identities=30%  Similarity=0.564  Sum_probs=266.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++++++...+.+..++|.++|||++|+|+++  ++++|++||||+..+..+|++|.+|..|.+++|+.
T Consensus        32 Vkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~  109 (343)
T PRK09880         32 VQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTT  109 (343)
T ss_pred             EEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCccCCCCCEEEECCCCCCcCChhhcCCChhhCCC
Confidence            6899999999999988643333333467999999999999999  78899999999999999999999999999999998


Q ss_pred             cccccCC----CCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHH
Q 020928           81 MRFFGSP----PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAA  156 (319)
Q Consensus        81 ~~~~~~~----~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la  156 (319)
                      ..+++..    ..+|+|+||++++++.++++|+++++++++...++++||+++++....++++|+|+|+|++|++++|+|
T Consensus       110 ~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~a~~al~~~~~~~g~~VlV~G~G~vG~~aiqla  189 (343)
T PRK09880        110 MRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMAFAEPLAVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAV  189 (343)
T ss_pred             cceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHHhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH
Confidence            7765531    247999999999999999999999998888778889999999887777899999999999999999999


Q ss_pred             HHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEE
Q 020928          157 RAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV  236 (319)
Q Consensus       157 ~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~  236 (319)
                      +.+|+++|++++++++++++++++|++.++++..  +++.+    +... .+++|++||++|++..+..++++++++|++
T Consensus       190 k~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~--~~~~~----~~~~-~g~~D~vid~~G~~~~~~~~~~~l~~~G~i  262 (343)
T PRK09880        190 KTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN--DDLDH----YKAE-KGYFDVSFEVSGHPSSINTCLEVTRAKGVM  262 (343)
T ss_pred             HHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCc--ccHHH----Hhcc-CCCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence            9999977889999999999999999999887643  23322    2221 236999999999877889999999999999


Q ss_pred             EEecccCCcccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEE
Q 020928          237 CLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       237 v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      +.+|......+++...+..+++++.++..+.+.++++++++++|++++.+.++++|++  +++++|++.+.++...||++
T Consensus       263 v~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l--~~~~~A~~~~~~~~~~gKvv  340 (343)
T PRK09880        263 VQVGMGGAPPEFPMMTLIVKEISLKGSFRFTEEFNTAVSWLANGVINPLPLLSAEYPF--TDLEEALIFAGDKTQAAKVQ  340 (343)
T ss_pred             EEEccCCCCCccCHHHHHhCCcEEEEEeeccccHHHHHHHHHcCCCCchhheEEEEEH--HHHHHHHHHHhcCCCceEEE
Confidence            9999765445566667788999999988777789999999999999887888899999  99999999999888889999


Q ss_pred             EeC
Q 020928          317 FNL  319 (319)
Q Consensus       317 i~~  319 (319)
                      +.+
T Consensus       341 l~~  343 (343)
T PRK09880        341 LVF  343 (343)
T ss_pred             EeC
Confidence            874

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=7.3e-50  Score=334.05  Aligned_cols=308  Identities=28%  Similarity=0.462  Sum_probs=263.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++|+|++|...++|.+    +..+|.++|||++|+|+++|++|+++++||.|+...+.+|++|..|++|++++|..
T Consensus        32 Vri~AtGVCHTD~~~~~G~~----p~~~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~  107 (366)
T COG1062          32 VRITATGVCHTDAHTLSGDD----PEGFPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEA  107 (366)
T ss_pred             EEEEEeeccccchhhhcCCC----CCCCceecccccccEEEEecCCccccCCCCEEEEcccCCCCCCchhhCCCcccccc
Confidence            68999999999999999865    44589999999999999999999999999999999888999999999999999985


Q ss_pred             cccccC--C----------------C--CCCcceeEEeecCCceEeCCCCCChhhhhccch-hHHHHHHH-HhcCCCCCC
Q 020928           81 MRFFGS--P----------------P--TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHAC-RRANVGPET  138 (319)
Q Consensus        81 ~~~~~~--~----------------~--~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~-~~~a~~~l-~~~~~~~~~  138 (319)
                      ......  .                .  ..++|+||..+++..+++++++.+++.++++.+ ..|.+-+. +.+++++|+
T Consensus       108 ~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~  187 (366)
T COG1062         108 IRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGD  187 (366)
T ss_pred             hhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCC
Confidence            332110  0                0  134899999999999999999999999999974 45667665 669999999


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|.|+|.|++|+++||-|+..|+.+|++++..++|++++++||++++++-... .+..+.++.++   ++++|++|||+|
T Consensus       188 tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~-~~vv~~i~~~T---~gG~d~~~e~~G  263 (366)
T COG1062         188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEV-DDVVEAIVELT---DGGADYAFECVG  263 (366)
T ss_pred             eEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhh-hhHHHHHHHhc---CCCCCEEEEccC
Confidence            99999999999999999999999999999999999999999999999873221 15666666664   569999999999


Q ss_pred             ChHHHHHHHHhhcCCCEEEEecccCCcccccchHHH-hcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeeeec
Q 020928          219 FDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA-AREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHRFG  293 (319)
Q Consensus       219 ~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~  293 (319)
                      +.+.+++++.+..++|+.+.+|........+++++. ..+..++|+...    ..++..+++++.+|++.+.++++++++
T Consensus       264 ~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~  343 (366)
T COG1062         264 NVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIP  343 (366)
T ss_pred             CHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeeccceEEEEeecCCccccchhHHHHHHHcCCCchhHHhhcccc
Confidence            999999999999999999999987655555454432 234778887765    668999999999999999999999999


Q ss_pred             CChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          294 FTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       294 ~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +  +|+++||+.|.+++.. |.|+++
T Consensus       344 L--e~INeaf~~m~~G~~I-R~Vi~~  366 (366)
T COG1062         344 L--EDINEAFDLMHEGKSI-RSVIRF  366 (366)
T ss_pred             H--HHHHHHHHHHhCCcee-eEEecC
Confidence            9  9999999999999664 666653

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1.7e-48  Score=345.36  Aligned_cols=309  Identities=35%  Similarity=0.623  Sum_probs=256.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCc-ccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPM-VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~-i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||+||++.+++...   ..+.|. ++|||++|+|+++| .++.|++||||+..+..+|++|++|+.|.+++|+
T Consensus        30 Vkv~~~gICGSDlh~~~g~~~---~~~~~~~i~GHE~~G~V~evG-~~~~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~  105 (350)
T COG1063          30 IRVTATGICGSDLHIYRGGEP---FVPPGDIILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCE  105 (350)
T ss_pred             EEEEEEeEchhhhhhccCCCC---CCCCCCcccCccceEEEEEec-cccCCCCCCEEEECCCcCCCCChhHhCcCcccCC
Confidence            689999999999999998541   123344 99999999999999 7788999999999999999999999999999999


Q ss_pred             CcccccCC----CCCCcceeEEeecCCceEe-CCCCCChhhhhccchhHHHHHHH-HhcCCCCCCeEEEECCCHHHHHHH
Q 020928           80 EMRFFGSP----PTNGSLAHKVVHPAKLCYK-LPDNVSLEEGAMCEPLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTL  153 (319)
Q Consensus        80 ~~~~~~~~----~~~g~~~e~~~~~~~~~~~-iP~~~~~~~aa~~~~~~~a~~~l-~~~~~~~~~~vlI~G~g~vG~~ai  153 (319)
                      +..+++..    ..+|+|+||+.+|.+.+++ +|+++++++|++..++++++++. .....+++.+|+|+|+|++|++++
T Consensus       106 ~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~  185 (350)
T COG1063         106 NPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAI  185 (350)
T ss_pred             CccccccccccCCCCCceEEEEEeccccCeecCCCCCChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHH
Confidence            76555432    2679999999999766555 47777888888889999997774 445555666999999999999999


Q ss_pred             HHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcC
Q 020928          154 LAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRP  232 (319)
Q Consensus       154 ~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  232 (319)
                      ++|+.+|+.+|++++.+++|++++++ .+++.+++. .. ++....+.+++  .+.++|++|||+|.+..+..+++.+++
T Consensus       186 ~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~-~~-~~~~~~~~~~t--~g~g~D~vie~~G~~~~~~~ai~~~r~  261 (350)
T COG1063         186 ALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNP-SE-DDAGAEILELT--GGRGADVVIEAVGSPPALDQALEALRP  261 (350)
T ss_pred             HHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecC-cc-ccHHHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHHhcC
Confidence            99999999999999999999999999 555555442 22 13333333333  456899999999998889999999999


Q ss_pred             CCEEEEecccCCcc-cccchHHHhcCcEEEEeec-c-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcC
Q 020928          233 GGKVCLIGLAKTEM-TVALTPAAAREVDVIGIFR-Y-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG  309 (319)
Q Consensus       233 ~G~~v~~g~~~~~~-~~~~~~~~~~~~~i~~~~~-~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  309 (319)
                      +|+++.+|...... .++...+..+++++.|++. . ...++.+++++.+|++++.+++++++++  +++++|++.+.+.
T Consensus       262 gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~~~~ll~~g~i~~~~lit~~~~~--~~~~~a~~~~~~~  339 (350)
T COG1063         262 GGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPL--DDAAEAYELFADR  339 (350)
T ss_pred             CCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccHHHHHHHHHcCCCChhHceEeeccH--HHHHHHHHHHHhc
Confidence            99999999876655 5667788899999999965 3 5679999999999999999888888888  9999999999886


Q ss_pred             CC-ceEEEEeC
Q 020928          310 GN-AIKVMFNL  319 (319)
Q Consensus       310 ~~-~gkvvi~~  319 (319)
                      .. ..|+++++
T Consensus       340 ~~~~~Kv~i~~  350 (350)
T COG1063         340 KEEAIKVVLKP  350 (350)
T ss_pred             CCCeEEEEecC
Confidence            44 66998863

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.6e-48  Score=322.30  Aligned_cols=304  Identities=24%  Similarity=0.402  Sum_probs=257.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEE-EccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVA-LEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~-~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||+|||||++|++..+|.- +  ..++|.++|||.+|+|+++|++|++|++||||- .....+|..|.||.+|..++|+
T Consensus        41 vkI~~cGIChsDlH~~~gdw-g--~s~~PlV~GHEiaG~VvkvGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCp  117 (360)
T KOG0023|consen   41 VKIEYCGVCHSDLHAWKGDW-G--LSKYPLVPGHEIAGVVVKVGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCP  117 (360)
T ss_pred             EEEEEEeccchhHHHhhccC-C--cccCCccCCceeeEEEEEECCCcccccccCeeeeeEEeccccCccccccCCcccCC
Confidence            68999999999999998743 2  268999999999999999999999999999995 4556799999999999999999


Q ss_pred             --Cccccc----CCCCCCcceeEEeecCCceEeCCCCCChhhhhccch-hHHHHHHHHhcCCCCCCeEEEECCCHHHHHH
Q 020928           80 --EMRFFG----SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHACRRANVGPETNVMIMGSGPIGLVT  152 (319)
Q Consensus        80 --~~~~~~----~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~-~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~a  152 (319)
                        +..+.+    +..+.|+||+|+++++..+++||+++++++||.+.+ ..|.|.+|.+.++.||+++.|.|+|++|.++
T Consensus       118 k~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~a  197 (360)
T KOG0023|consen  118 KMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMA  197 (360)
T ss_pred             ceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehhHHcCCCCCcEEEEecCcccchHH
Confidence              433332    233466799999999999999999999999998875 4567889999999999999999987799999


Q ss_pred             HHHHHHcCCCeEEEecCCh-hHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhc
Q 020928          153 LLAARAFGAPRIIITDVDV-QRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       153 i~la~~~g~~~vv~v~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  231 (319)
                      +|+||++|. +|++++++. +|++.++.||++..++. ..++++   ++.+.++.+.++|-|.+.  ....+..++.+|+
T Consensus       198 Vq~AKAMG~-rV~vis~~~~kkeea~~~LGAd~fv~~-~~d~d~---~~~~~~~~dg~~~~v~~~--a~~~~~~~~~~lk  270 (360)
T KOG0023|consen  198 VQYAKAMGM-RVTVISTSSKKKEEAIKSLGADVFVDS-TEDPDI---MKAIMKTTDGGIDTVSNL--AEHALEPLLGLLK  270 (360)
T ss_pred             HHHHHHhCc-EEEEEeCCchhHHHHHHhcCcceeEEe-cCCHHH---HHHHHHhhcCcceeeeec--cccchHHHHHHhh
Confidence            999999999 788888887 78888888999988764 334454   444444445666666655  3447888999999


Q ss_pred             CCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC
Q 020928          232 PGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG  310 (319)
Q Consensus       232 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  310 (319)
                      .+|+++++|.+.....+++.++.++.+.|.|+... .++.++++++..++.+  ++.+ +..++  +++++|++.|++++
T Consensus       271 ~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~i--k~~I-E~v~~--~~v~~a~erm~kgd  345 (360)
T KOG0023|consen  271 VNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLI--KSPI-ELVKL--SEVNEAYERMEKGD  345 (360)
T ss_pred             cCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCC--cCce-EEEeh--hHHHHHHHHHHhcC
Confidence            99999999998888888999999999999999876 7789999999999999  4444 55678  99999999999999


Q ss_pred             CceEEEEeC
Q 020928          311 NAIKVMFNL  319 (319)
Q Consensus       311 ~~gkvvi~~  319 (319)
                      ...|.|+.+
T Consensus       346 V~yRfVvD~  354 (360)
T KOG0023|consen  346 VRYRFVVDV  354 (360)
T ss_pred             eeEEEEEEc
Confidence            999998864

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=1.9e-47  Score=340.02  Aligned_cols=308  Identities=31%  Similarity=0.546  Sum_probs=261.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|++.+.+....  +..+|.++|||++|+|+++|++|++|++||||+..+..+|++|+.|+.|++++|..
T Consensus        29 V~v~~~gi~~~D~~~~~~~~~~--~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~  106 (339)
T cd08239          29 LRVKASGLCGSDLHYYYHGHRA--PAYQGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTS  106 (339)
T ss_pred             EEEEEEEeccccHHHHcCCCCc--cCCCCceeccCceEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCcC
Confidence            6899999999999988764322  22358999999999999999999999999999999889999999999999999987


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHc
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAF  159 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~  159 (319)
                      ..+..+....|+|+||+.++...++++|+++++++|++++ ++.+||++++..+++++++|||+|+|++|++++|+|+.+
T Consensus       107 ~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~  186 (339)
T cd08239         107 KRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVGVSGRDTVLVVGAGPVGLGALMLARAL  186 (339)
T ss_pred             cccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc
Confidence            6541122457999999999999999999999999999875 788999999888899999999999999999999999999


Q ss_pred             CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          160 GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       160 g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      |++.|+++++++++.++++++|++.++++..  ++ .+.+.++.  .+.++|++||++|++......+++++++|+++.+
T Consensus       187 G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~--~~-~~~~~~~~--~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~  261 (339)
T cd08239         187 GAEDVIGVDPSPERLELAKALGADFVINSGQ--DD-VQEIRELT--SGAGADVAIECSGNTAARRLALEAVRPWGRLVLV  261 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHhCCCEEEcCCc--ch-HHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            9965888999999999999999998887533  23 33444433  3458999999999886678889999999999999


Q ss_pred             cccCCcccccc-hHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          240 GLAKTEMTVAL-TPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       240 g~~~~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      |..... .+.. ..+..+++++.+++.. .++++++++++.+|++++.+.++++|++  +++++|++.++++. .||+|+
T Consensus       262 g~~~~~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l--~~~~~a~~~~~~~~-~gKvvi  337 (339)
T cd08239         262 GEGGEL-TIEVSNDLIRKQRTLIGSWYFSVPDMEECAEFLARHKLEVDRLVTHRFGL--DQAPEAYALFAQGE-SGKVVF  337 (339)
T ss_pred             cCCCCc-ccCcHHHHHhCCCEEEEEecCCHHHHHHHHHHHHcCCCChhHeEEEEecH--HHHHHHHHHHHcCC-ceEEEE
Confidence            864432 2332 3467789999998876 4679999999999999888888999999  99999999998875 799999


Q ss_pred             eC
Q 020928          318 NL  319 (319)
Q Consensus       318 ~~  319 (319)
                      ++
T Consensus       338 ~~  339 (339)
T cd08239         338 VF  339 (339)
T ss_pred             eC
Confidence            75

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=7.3e-47  Score=339.86  Aligned_cols=306  Identities=31%  Similarity=0.490  Sum_probs=260.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|..    +..+|.++|||++|+|+++|+++++|++||||++.+..+|+.|..|..|.+++|..
T Consensus        38 V~v~~~gi~~~D~~~~~g~~----~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~  113 (371)
T cd08281          38 VKIAAAGLCHSDLSVINGDR----PRPLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEP  113 (371)
T ss_pred             EEEEEEeeCccchHhhcCCC----CCCCCccCCccceeEEEEeCCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccC
Confidence            68999999999999998753    33579999999999999999999999999999987777899999999999999987


Q ss_pred             cccccC--------------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCC
Q 020928           81 MRFFGS--------------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPET  138 (319)
Q Consensus        81 ~~~~~~--------------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~  138 (319)
                      ....+.                    ....|+|+||+.+++..++++|+++++++|+.++ ...+||+++ +.+++++++
T Consensus       114 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~  193 (371)
T cd08281         114 GAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQ  193 (371)
T ss_pred             ccccccccccccCcccccccCcccccccCcccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCC
Confidence            532110                    0013799999999999999999999999999885 678899987 558899999


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|||.|+|++|++++|+|+..|++.|++++++++++++++++|++.++++.  .+++.+.+.++.   +.++|++|||+|
T Consensus       194 ~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~--~~~~~~~i~~~~---~~g~d~vid~~G  268 (371)
T cd08281         194 SVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAG--DPNAVEQVRELT---GGGVDYAFEMAG  268 (371)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCC--chhHHHHHHHHh---CCCCCEEEECCC
Confidence            999999999999999999999996688999999999999999999887753  345555665553   338999999999


Q ss_pred             ChHHHHHHHHhhcCCCEEEEecccCC--cccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeeee
Q 020928          219 FDKTMSTALNATRPGGKVCLIGLAKT--EMTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHRF  292 (319)
Q Consensus       219 ~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~  292 (319)
                      ++..+..++++++++|+++.+|....  ...++...+..+++++.+++..    .+++.++++++.+|++++.++++++|
T Consensus       269 ~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~  348 (371)
T cd08281         269 SVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRL  348 (371)
T ss_pred             ChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeee
Confidence            87788999999999999999996532  2345556678899999998754    45688899999999998888889999


Q ss_pred             cCChhhHHHHHHHHhcCCCceEEEE
Q 020928          293 GFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       293 ~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      ++  +++++|++.+.+++..+|+|+
T Consensus       349 ~l--~~~~~A~~~~~~~~~~~~vi~  371 (371)
T cd08281         349 PL--DEINEGFDRLAAGEAVRQVIL  371 (371)
T ss_pred             cH--HHHHHHHHHHhCCCceeeeeC
Confidence            99  999999999999988888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=2.6e-46  Score=337.18  Aligned_cols=311  Identities=26%  Similarity=0.432  Sum_probs=258.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++.+.|...  ....+|.++|||++|+|+++|+++++|++||||++.+..+|+.|.+|..|.+++|+.
T Consensus        40 V~v~~~gic~sD~~~~~g~~~--~~~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~  117 (381)
T PLN02740         40 IKILYTSICHTDLSAWKGENE--AQRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCET  117 (381)
T ss_pred             EEEEEEecChhhHHHhCCCCc--ccCCCCccccccceEEEEEeCCCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccC
Confidence            689999999999999987531  123579999999999999999999999999999999999999999999999999987


Q ss_pred             cccccC-----------------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCC
Q 020928           81 MRFFGS-----------------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVG  135 (319)
Q Consensus        81 ~~~~~~-----------------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~  135 (319)
                      ....+.                       ....|+|+||+.++.+.++++|+++++++++.+. .+.+||+++ +.++++
T Consensus       118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~  197 (381)
T PLN02740        118 YRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQ  197 (381)
T ss_pred             ccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCC
Confidence            543211                       0126999999999999999999999999998875 678899886 558999


Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      ++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++.++++...++++.+.+.++.   ++++|++||
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~---~~g~dvvid  274 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMT---GGGVDYSFE  274 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHh---CCCCCEEEE
Confidence            99999999999999999999999999668899999999999999999988875433334555565554   238999999


Q ss_pred             ccCChHHHHHHHHhhcCC-CEEEEecccCCcccccchHH-HhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCcee
Q 020928          216 CVGFDKTMSTALNATRPG-GKVCLIGLAKTEMTVALTPA-AAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLIT  289 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~  289 (319)
                      ++|++..+...+.+++++ |+++.+|.......+..... .++++++.|+...    ...+.++++++.+|++++.+.++
T Consensus       275 ~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it  354 (381)
T PLN02740        275 CAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFIT  354 (381)
T ss_pred             CCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHHhcCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHhee
Confidence            999877889999999996 99999997543322333222 3468888887653    24578899999999998878889


Q ss_pred             eeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          290 HRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       290 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++|++  +|+++|++.+.+++. .|++|++
T Consensus       355 ~~~~l--~e~~~A~~~~~~~~~-~k~~~~~  381 (381)
T PLN02740        355 HELPF--EKINEAFQLLEDGKA-LRCLLHL  381 (381)
T ss_pred             EEecH--HHHHHHHHHHHCCCc-eeEEEeC
Confidence            99999  999999999988855 5999874

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=8.3e-46  Score=333.07  Aligned_cols=307  Identities=25%  Similarity=0.421  Sum_probs=255.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++.+.+.      ..+|.++|||++|+|+++|+++++|++||||++.+..+|+.|.+|.+|.+++|+.
T Consensus        42 Vkv~~~gic~sD~~~~~g~------~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~  115 (378)
T PLN02827         42 IKVVSTSLCRSDLSAWESQ------ALFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQV  115 (378)
T ss_pred             EEEEEEecChhHHHHhcCC------CCCCeeecccceEEEEEcCCCCcccCCCCEEEEecCCCCCCChhhhCcCcccccC
Confidence            6899999999999988763      1468999999999999999999999999999998888999999999999999987


Q ss_pred             cccc----------------cCC----CCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCC
Q 020928           81 MRFF----------------GSP----PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPET  138 (319)
Q Consensus        81 ~~~~----------------~~~----~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~  138 (319)
                      ....                +..    ...|+|+||+.+++..++++|+++++++++.+. .+.++|+++ +.+++++++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~  195 (378)
T PLN02827        116 LGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGS  195 (378)
T ss_pred             ccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCC
Confidence            5321                000    024899999999999999999999999988775 567788766 458899999


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|||+|+|++|++++|+|+.+|++.|+++++++++.++++++|++.++++....+++.+.+.++.   ++++|++||++|
T Consensus       196 ~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~---~~g~d~vid~~G  272 (378)
T PLN02827        196 SVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMT---GGGADYSFECVG  272 (378)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHh---CCCCCEEEECCC
Confidence            99999999999999999999999778888889999999999999988875432235555555544   338999999999


Q ss_pred             ChHHHHHHHHhhcCC-CEEEEecccCCcccccc-hHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeeee
Q 020928          219 FDKTMSTALNATRPG-GKVCLIGLAKTEMTVAL-TPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHRF  292 (319)
Q Consensus       219 ~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~  292 (319)
                      .+..+...++.++++ |+++.+|.......+.. ..++.+++++.|+...    ..++.++++++++|++++.+.++++|
T Consensus       273 ~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~  352 (378)
T PLN02827        273 DTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNL  352 (378)
T ss_pred             ChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEe
Confidence            876788999999998 99999997543333322 3467789999987653    34688899999999997766888999


Q ss_pred             cCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          293 GFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       293 ~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++  +++++|++.+.+++. .|+||.+
T Consensus       353 ~l--e~~~~A~~~~~~~~~-~k~vi~~  376 (378)
T PLN02827        353 SF--DEINKAFELMREGKC-LRCVIHM  376 (378)
T ss_pred             cH--HHHHHHHHHHHCCCc-eEEEEEe
Confidence            99  999999999998865 6999864

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-45  Score=328.85  Aligned_cols=307  Identities=28%  Similarity=0.499  Sum_probs=258.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|++.+.+..    ...+|.++|||++|+|+++|+++++|++||||++.+..+|+.|.+|..|.+++|..
T Consensus        30 V~v~~~gi~~~D~~~~~~~~----~~~~p~i~G~e~~G~V~~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~  105 (347)
T PRK10309         30 VKVASSGLCGSDIPRIFKNG----AHYYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAK  105 (347)
T ss_pred             EEEEEEEEchhcHHHHhCCC----CCCCCcccccceEEEEEEeCCCCCCCCCCCEEEECCCcCCCCCcchhCcCcccCCC
Confidence            68999999999997543211    11358899999999999999999999999999999999999999999999999987


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+++. ...|+|+||+.++++.++++|+++++++|++++++++++++++..+++++++|+|+|+|++|++++|+|+.+|
T Consensus       106 ~~~~g~-~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~~~~~~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G  184 (347)
T PRK10309        106 YDFIGS-RRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALG  184 (347)
T ss_pred             cceecc-CCCCccceeEEeehHHeEECcCCCCHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            665543 3589999999999999999999999999998877777888887788999999999999999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCcc-EEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGID-VSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d-~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ++.|++++++++++++++++|++.++++..  .+ ...+.++.  .+.++| ++|||+|++..+..++++++++|+++.+
T Consensus       185 ~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~-~~~~~~~~--~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~  259 (347)
T PRK10309        185 AKSVTAIDINSEKLALAKSLGAMQTFNSRE--MS-APQIQSVL--RELRFDQLILETAGVPQTVELAIEIAGPRAQLALV  259 (347)
T ss_pred             CCeEEEECCCHHHHHHHHHcCCceEecCcc--cC-HHHHHHHh--cCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            976888889999999999999998877543  22 23344333  245788 9999999877889999999999999999


Q ss_pred             cccCCccccc---chHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC
Q 020928          240 GLAKTEMTVA---LTPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG  310 (319)
Q Consensus       240 g~~~~~~~~~---~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  310 (319)
                      |......+++   ...+..+++++.+++..      .++++++++++++|.+.+.+.++++|++  +++++|++.+.++.
T Consensus       260 G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l--~~~~~A~~~~~~~~  337 (347)
T PRK10309        260 GTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSF--ESFAQAVRDLAGNP  337 (347)
T ss_pred             ccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHHHHcCCCCchhheEEEeeH--HHHHHHHHHHhcCC
Confidence            9654332222   23467789999987653      2568899999999999888889999999  99999999999998


Q ss_pred             CceEEEEeC
Q 020928          311 NAIKVMFNL  319 (319)
Q Consensus       311 ~~gkvvi~~  319 (319)
                      ..||+++++
T Consensus       338 ~~gKvvv~~  346 (347)
T PRK10309        338 MPGKVLLQI  346 (347)
T ss_pred             cceEEEEeC
Confidence            889999874

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1.2e-45  Score=331.40  Aligned_cols=309  Identities=27%  Similarity=0.432  Sum_probs=252.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++..+|...   ...+|.++|||++|+|+++|+++++|++||||++.+..+|+.|.+|..|.+++|++
T Consensus        31 I~v~a~gi~~sD~~~~~g~~~---~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~  107 (368)
T TIGR02818        31 VRIVATGVCHTDAFTLSGADP---EGVFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVA  107 (368)
T ss_pred             EEEEEecccHHHHHHhcCCCC---CCCCCeeeccccEEEEEEECCCCccCCCCCEEEEcCCCCCCCChhhhCCCcccccC
Confidence            689999999999999887531   13579999999999999999999999999999998888999999999999999987


Q ss_pred             cccc---cC-----------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCC
Q 020928           81 MRFF---GS-----------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPET  138 (319)
Q Consensus        81 ~~~~---~~-----------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~  138 (319)
                      ....   +.                 ....|+|+||+.++.+.++++|+++++++|++++ ++.+||+++ +++++++++
T Consensus       108 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~  187 (368)
T TIGR02818       108 VRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGD  187 (368)
T ss_pred             cccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCC
Confidence            4310   00                 0024799999999999999999999999999886 778999998 558999999


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|||+|+|++|++++|+|+.+|+++|++++.+++++++++++|++.++++.....++.+.+.+++   ++++|++||++|
T Consensus       188 ~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~---~~g~d~vid~~G  264 (368)
T TIGR02818       188 TVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEIT---DGGVDYSFECIG  264 (368)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHh---CCCCCEEEECCC
Confidence            99999999999999999999999778999999999999999999998875432334445555554   238999999999


Q ss_pred             ChHHHHHHHHhhcCC-CEEEEecccCC--cccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeee
Q 020928          219 FDKTMSTALNATRPG-GKVCLIGLAKT--EMTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHR  291 (319)
Q Consensus       219 ~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~  291 (319)
                      ++..+..++++++++ |+++.+|....  ...+....+. ++..+.++...    ..++.++++++.+|++++.++++++
T Consensus       265 ~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~  343 (368)
T TIGR02818       265 NVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLV-TGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHT  343 (368)
T ss_pred             CHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHh-ccceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEE
Confidence            877888999999886 99999997532  2222222232 33445665432    3468899999999999888889999


Q ss_pred             ecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          292 FGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       292 ~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      |+|  +++++|++.+++++ ..|+++++
T Consensus       344 ~~l--~~~~~A~~~~~~~~-~~k~~v~~  368 (368)
T TIGR02818       344 MPL--EDINEAFDLMHEGK-SIRTVIHY  368 (368)
T ss_pred             ecH--HHHHHHHHHHhCCC-ceeEEeeC
Confidence            999  99999999998775 47999875

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=1e-45  Score=333.00  Aligned_cols=308  Identities=22%  Similarity=0.405  Sum_probs=243.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|..    ...+|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|.+|++++|+.
T Consensus        38 Vkv~a~gIcgsD~~~~~g~~----~~~~p~i~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~  113 (393)
T TIGR02819        38 LKVVTTNICGSDQHMVRGRT----TAPTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLN  113 (393)
T ss_pred             EEEEEeeecHHHHHHHCCCC----CCCCCccccceeEEEEEEEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcC
Confidence            68999999999999988642    23579999999999999999999999999999998888999999999999999997


Q ss_pred             cc------cccCC---CCCCcceeEEeecCC--ceEeCCCCCCh----hhhhcc-chhHHHHHHHHhcCCCCCCeEEEEC
Q 020928           81 MR------FFGSP---PTNGSLAHKVVHPAK--LCYKLPDNVSL----EEGAMC-EPLSVGVHACRRANVGPETNVMIMG  144 (319)
Q Consensus        81 ~~------~~~~~---~~~g~~~e~~~~~~~--~~~~iP~~~~~----~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G  144 (319)
                      ..      +++..   ..+|+|+||+.+++.  .++++|++++.    ++++.+ .++.++|+++++.+++++++|||.|
T Consensus       114 ~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G  193 (393)
T TIGR02819       114 VNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAG  193 (393)
T ss_pred             CCCCCccceecccccCCCCCceEEEEEechhhCceEECCCcccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEEC
Confidence            43      12211   246999999999964  79999998753    233444 5788999999888999999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCCh----
Q 020928          145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD----  220 (319)
Q Consensus       145 ~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~----  220 (319)
                      +|++|++++|+|+.+|++.+++++.++++.++++++|++. +++ ....++.+.+.++.  .+.++|++||++|.+    
T Consensus       194 ~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~-v~~-~~~~~~~~~v~~~~--~~~g~Dvvid~~G~~~~~~  269 (393)
T TIGR02819       194 AGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCET-VDL-SKDATLPEQIEQIL--GEPEVDCAVDCVGFEARGH  269 (393)
T ss_pred             CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeE-Eec-CCcccHHHHHHHHc--CCCCCcEEEECCCCccccc
Confidence            9999999999999999976777778889999999999974 433 22234555555543  346799999999985    


Q ss_pred             ----------HHHHHHHHhhcCCCEEEEecccC-Ccc-c-----------ccchHHHhcCcEEEEeeccC-CCHHHHHHH
Q 020928          221 ----------KTMSTALNATRPGGKVCLIGLAK-TEM-T-----------VALTPAAAREVDVIGIFRYR-STWPLCIEF  276 (319)
Q Consensus       221 ----------~~~~~~~~~l~~~G~~v~~g~~~-~~~-~-----------~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~  276 (319)
                                ..++.+++.++++|+++.+|... .+. .           +.....+.+++++.+..... +.+.+++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~~~  349 (393)
T TIGR02819       270 GHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQTPVMKYNRNLMQA  349 (393)
T ss_pred             cccccccchHHHHHHHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceEEeccCChhhhHHHHHHH
Confidence                      37899999999999999999753 111 1           11223345556666543322 334689999


Q ss_pred             HHcCCCCCCCcee-eeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          277 LRSGKIDVKPLIT-HRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       277 ~~~g~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +.+|++++.++++ ++|++  +++++|++.+.++. .+|+++++
T Consensus       350 ~~~g~i~~~~~i~~~~~~l--~~~~~a~~~~~~~~-~~Kvvi~~  390 (393)
T TIGR02819       350 ILHDRVQIAKAVNVTVISL--DDAPEGYAEFDAGA-AKKFVIDP  390 (393)
T ss_pred             HHcCCCCHHHceecceecH--HHHHHHHHHHhhCC-ceEEEEeC
Confidence            9999998777666 67999  99999999998874 58999863

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=2.3e-45  Score=328.69  Aligned_cols=307  Identities=25%  Similarity=0.431  Sum_probs=257.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|+++.+|..    ...+|.++|||++|+|+++|+++++|++||||++.+..+|+.|.+|..|++++|..
T Consensus        31 V~v~~~gi~~~D~~~~~g~~----~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~  106 (358)
T TIGR03451        31 VDIQACGVCHTDLHYREGGI----NDEFPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFD  106 (358)
T ss_pred             EEEEEEeecHHHHHHhcCCc----cccCCcccccceEEEEEEeCCCCcccCCCCEEEEccCCCCCCChHHhCcCcccCcC
Confidence            68999999999999988743    23579999999999999999999999999999998889999999999999999975


Q ss_pred             cccc--------cC----CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEECCC
Q 020928           81 MRFF--------GS----PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSG  146 (319)
Q Consensus        81 ~~~~--------~~----~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G~g  146 (319)
                      ....        +.    .-..|+|+||+.+++..++++|+++++++|+.+. .+.++|+++ +.++++++++|||+|+|
T Consensus       107 ~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g  186 (358)
T TIGR03451       107 THNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCG  186 (358)
T ss_pred             ccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCC
Confidence            3211        10    0135999999999999999999999999998875 567788876 45789999999999999


Q ss_pred             HHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHH
Q 020928          147 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTA  226 (319)
Q Consensus       147 ~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~  226 (319)
                      ++|++++|+|+..|+++|++++++++++++++++|++.++++.  .+++.+.+.++.  .+.++|++|||+|++..+..+
T Consensus       187 ~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~--~~~~~~~i~~~~--~~~g~d~vid~~g~~~~~~~~  262 (358)
T TIGR03451       187 GVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS--GTDPVEAIRALT--GGFGADVVIDAVGRPETYKQA  262 (358)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCC--CcCHHHHHHHHh--CCCCCCEEEECCCCHHHHHHH
Confidence            9999999999999997789999999999999999999888753  345555555543  346799999999987788999


Q ss_pred             HHhhcCCCEEEEecccCCc--ccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHH
Q 020928          227 LNATRPGGKVCLIGLAKTE--MTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIE  300 (319)
Q Consensus       227 ~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  300 (319)
                      +++++++|+++.+|.....  ..++...+..+++++.+++..    .+.++++++++++|++++.+.++++|++  ++++
T Consensus       263 ~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l--~~~~  340 (358)
T TIGR03451       263 FYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGL--DDVE  340 (358)
T ss_pred             HHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecH--HHHH
Confidence            9999999999999975432  234445677788998887542    4568889999999999887888899999  9999


Q ss_pred             HHHHHHhcCCCceEEEEe
Q 020928          301 DAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       301 ~a~~~~~~~~~~gkvvi~  318 (319)
                      +|++.+++++.. |+++.
T Consensus       341 ~A~~~~~~~~~~-k~~~~  357 (358)
T TIGR03451       341 EAFDKMHAGDVL-RSVVE  357 (358)
T ss_pred             HHHHHHhCCCcc-eeEEe
Confidence            999999988665 77775

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.7e-45  Score=303.05  Aligned_cols=310  Identities=26%  Similarity=0.417  Sum_probs=263.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++++|++|.....|.+   ....+|.|+|||++|+|+.+|++|+++++||+|+......|++|.+|+++..++|..
T Consensus        37 IKI~~t~vCHTD~~~~~g~~---~~~~fP~IlGHEaaGIVESvGegV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~  113 (375)
T KOG0022|consen   37 IKILATGVCHTDAYVWSGKD---PEGLFPVILGHEAAGIVESVGEGVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEK  113 (375)
T ss_pred             EEEEEEeeccccceeecCCC---ccccCceEecccceeEEEEecCCccccCCCCEEeeccccCCCCcccccCCCCChhhh
Confidence            68999999999999999875   234789999999999999999999999999999999999999999999999999977


Q ss_pred             cccccC---C------------------CCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCC
Q 020928           81 MRFFGS---P------------------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPE  137 (319)
Q Consensus        81 ~~~~~~---~------------------~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~  137 (319)
                      ......   .                  ....+|+||.+++...+++|++..+++.++++. ...|+|-|. +.+++++|
T Consensus       114 ~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~G  193 (375)
T KOG0022|consen  114 FRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPG  193 (375)
T ss_pred             hcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCC
Confidence            554321   0                  013489999999999999999999999999997 456777764 77999999


Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +++.|+|-|++|+++++-||+.|+++|+.+|-++++.+.++++|+++.++-........+.+.+++   ++|+|+.|||+
T Consensus       194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmT---dgGvDysfEc~  270 (375)
T KOG0022|consen  194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMT---DGGVDYSFECI  270 (375)
T ss_pred             CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHh---cCCceEEEEec
Confidence            999999999999999999999999999999999999999999999999875422223445555554   68999999999


Q ss_pred             CChHHHHHHHHhhcCC-CEEEEecccCCcccccchHH-HhcCcEEEEeec----cCCCHHHHHHHHHcCCCCCCCceeee
Q 020928          218 GFDKTMSTALNATRPG-GKVCLIGLAKTEMTVALTPA-AAREVDVIGIFR----YRSTWPLCIEFLRSGKIDVKPLITHR  291 (319)
Q Consensus       218 g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~  291 (319)
                      |....+++++.+...+ |.-+.+|.......+..+++ .+++..+.|+.-    ...++..+++.+.++++++...++++
T Consensus       271 G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~  350 (375)
T KOG0022|consen  271 GNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHE  350 (375)
T ss_pred             CCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcc
Confidence            9999999999999888 99999998766555555553 344566655432    27789999999999999999999999


Q ss_pred             ecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          292 FGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       292 ~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++|  +++++||+.|.+++.. |.|+.+
T Consensus       351 l~f--~~In~AF~ll~~Gksi-R~vl~~  375 (375)
T KOG0022|consen  351 LPF--EEINKAFDLLHEGKSI-RCVLWM  375 (375)
T ss_pred             cCH--HHHHHHHHHHhCCceE-EEEEeC
Confidence            999  9999999999999776 777753

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=3.9e-45  Score=326.81  Aligned_cols=301  Identities=21%  Similarity=0.317  Sum_probs=244.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEcc-CccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP-GISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|++++.|...   ...+|.++|||++|+|+++|++|++|++||||+..+ ..+|+.|.+|..|.+++|+
T Consensus        42 V~v~~~gic~sD~~~~~g~~~---~~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~  118 (360)
T PLN02586         42 VKILYCGVCHSDLHTIKNEWG---FTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCP  118 (360)
T ss_pred             EEEEEecCChhhHhhhcCCcC---CCCCCccCCcceeEEEEEECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCC
Confidence            689999999999999876431   125699999999999999999999999999998544 3579999999999999998


Q ss_pred             Cccccc------CCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEECCCHHHHH
Q 020928           80 EMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGSGPIGLV  151 (319)
Q Consensus        80 ~~~~~~------~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G~g~vG~~  151 (319)
                      +..+..      +...+|+|+||+.++++.++++|+++++++|+.+. ...++|+++.+ ..++++++|||.|+|++|++
T Consensus       119 ~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~  198 (360)
T PLN02586        119 KMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHV  198 (360)
T ss_pred             CccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHH
Confidence            764321      12247999999999999999999999999999775 56788988865 56789999999999999999


Q ss_pred             HHHHHHHcCCCeEEEecCChh-HHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhh
Q 020928          152 TLLAARAFGAPRIIITDVDVQ-RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT  230 (319)
Q Consensus       152 ai~la~~~g~~~vv~v~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l  230 (319)
                      ++|+|+.+|+ .+++++.+++ +.++++++|++.++++..  .   +.+.++.   + ++|++||++|++..+..+++++
T Consensus       199 avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~--~---~~~~~~~---~-~~D~vid~~g~~~~~~~~~~~l  268 (360)
T PLN02586        199 AVKIGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVSTD--P---EKMKAAI---G-TMDYIIDTVSAVHALGPLLGLL  268 (360)
T ss_pred             HHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcEEEcCCC--H---HHHHhhc---C-CCCEEEECCCCHHHHHHHHHHh
Confidence            9999999999 4665555544 456778899998876432  1   2333332   2 6999999999876788999999


Q ss_pred             cCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcC
Q 020928          231 RPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG  309 (319)
Q Consensus       231 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  309 (319)
                      +++|+++.+|.......++...++.++..+.++... ...++++++++.+|++++  .+ ++|++  +|+++|++.+.++
T Consensus       269 ~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~~--~~-~~~~l--~~~~~A~~~~~~~  343 (360)
T PLN02586        269 KVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSDIGGIKETQEMLDFCAKHNITA--DI-ELIRM--DEINTAMERLAKS  343 (360)
T ss_pred             cCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcCcCCHHHHHHHHHHHHhCCCCC--cE-EEEeH--HHHHHHHHHHHcC
Confidence            999999999965444455666677788888777654 456889999999999953  34 57888  9999999999999


Q ss_pred             CCceEEEEeC
Q 020928          310 GNAIKVMFNL  319 (319)
Q Consensus       310 ~~~gkvvi~~  319 (319)
                      +..||+|+++
T Consensus       344 ~~~gkvvi~~  353 (360)
T PLN02586        344 DVRYRFVIDV  353 (360)
T ss_pred             CCcEEEEEEc
Confidence            8889999874

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=7.4e-45  Score=326.82  Aligned_cols=308  Identities=25%  Similarity=0.428  Sum_probs=254.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++.++|...   ...+|.++|||++|+|+++|+++++|++||||+..+..+|++|.+|..|.+++|..
T Consensus        32 Ikv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~  108 (369)
T cd08301          32 IKILHTSLCHTDVYFWEAKGQ---TPLFPRILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDL  108 (369)
T ss_pred             EEEEEEeeCchhHHHhcCCCC---CCCCCcccccccceEEEEeCCCCCccccCCEEEEccCCCCCCCchhcCCCcccCcC
Confidence            689999999999999887532   23579999999999999999999999999999998889999999999999999987


Q ss_pred             cccc---cC------------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCC
Q 020928           81 MRFF---GS------------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPE  137 (319)
Q Consensus        81 ~~~~---~~------------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~  137 (319)
                      ..+.   +.                  ....|+|+||+.+++..++++|+++++++|++++ .+.++|+++ +..+++++
T Consensus       109 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g  188 (369)
T cd08301         109 LRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKG  188 (369)
T ss_pred             cccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCC
Confidence            5432   00                  0034899999999999999999999999998875 677889876 45889999


Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      ++|||+|+|++|++++|+|+.+|+.+|+++++++++.++++++|++.++++....+++...++++.   ++++|++||++
T Consensus       189 ~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~---~~~~d~vid~~  265 (369)
T cd08301         189 STVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMT---GGGVDYSFECT  265 (369)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHh---CCCCCEEEECC
Confidence            999999999999999999999998678999999999999999999888875432234445555544   34899999999


Q ss_pred             CChHHHHHHHHhhcCC-CEEEEecccCCcccccchH-HHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeee
Q 020928          218 GFDKTMSTALNATRPG-GKVCLIGLAKTEMTVALTP-AAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHR  291 (319)
Q Consensus       218 g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~  291 (319)
                      |+...+...+.+++++ |+++.+|.......+.... ...+++++.+++..    ...++++++++.+|.+++.+.++++
T Consensus       266 G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~  345 (369)
T cd08301         266 GNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLLNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHE  345 (369)
T ss_pred             CChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHhcCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeee
Confidence            9877788899999996 9999999754322222222 23478899887543    3467889999999999887788899


Q ss_pred             ecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          292 FGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       292 ~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      |++  +++++|++.+++++. .|+++
T Consensus       346 ~~l--~~~~~A~~~~~~~~~-~k~~~  368 (369)
T cd08301         346 LPF--SEINKAFDLLLKGEC-LRCIL  368 (369)
T ss_pred             ecH--HHHHHHHHHHHCCCc-eeEEe
Confidence            999  999999999999876 48886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=4.6e-45  Score=327.32  Aligned_cols=301  Identities=20%  Similarity=0.314  Sum_probs=246.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCc-cCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|++++.|...   ...+|.++|||++|+|+++|+++++|++||||+..+.. +|++|.+|++|.+++|+
T Consensus        36 VkV~a~gic~sD~~~~~G~~~---~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~  112 (375)
T PLN02178         36 VKILFCGVCHSDLHTIKNHWG---FSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCP  112 (375)
T ss_pred             EEEEEEcCchHHHHHhcCCCC---CCCCCcccCceeeEEEEEECCCCCccCCCCEEEEcCccCCCCCChhHhCcchhcCC
Confidence            689999999999999886431   12468999999999999999999999999999865544 69999999999999999


Q ss_pred             Cccccc------CCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcC--CCCCCeEEEECCCHHHH
Q 020928           80 EMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRAN--VGPETNVMIMGSGPIGL  150 (319)
Q Consensus        80 ~~~~~~------~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~--~~~~~~vlI~G~g~vG~  150 (319)
                      +..+..      +...+|+|+||+.++++.++++|+++++++|+.+. ...++|+++....  .+++++|+|.|+|++|+
T Consensus       113 ~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~  192 (375)
T PLN02178        113 KVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGH  192 (375)
T ss_pred             CccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHH
Confidence            865321      11236999999999999999999999999998775 5678888886643  46899999999999999


Q ss_pred             HHHHHHHHcCCCeEEEecCCh-hHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHh
Q 020928          151 VTLLAARAFGAPRIIITDVDV-QRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA  229 (319)
Q Consensus       151 ~ai~la~~~g~~~vv~v~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~  229 (319)
                      +++|+|+.+|+ ++++++.++ ++.++++++|++.++++..  .   ..+.+.   .+ ++|++||++|++..+..++++
T Consensus       193 ~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~--~---~~v~~~---~~-~~D~vid~~G~~~~~~~~~~~  262 (375)
T PLN02178        193 IAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVTTD--S---QKMKEA---VG-TMDFIIDTVSAEHALLPLFSL  262 (375)
T ss_pred             HHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcCcC--H---HHHHHh---hC-CCcEEEECCCcHHHHHHHHHh
Confidence            99999999999 566666554 4578889999998876432  1   233332   22 699999999987678899999


Q ss_pred             hcCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhc
Q 020928          230 TRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ  308 (319)
Q Consensus       230 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~  308 (319)
                      ++++|+++.+|.......++...+..+++++.|+... .+++.++++++++|+++  +.+ ++|+|  +++++|++.+.+
T Consensus       263 l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~--~~i-~~~~l--~~~~~A~~~~~~  337 (375)
T PLN02178        263 LKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIV--SDI-ELIKM--SDINSAMDRLAK  337 (375)
T ss_pred             hcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCccCHHHHHHHHHHHHhCCCc--ccE-EEEeH--HHHHHHHHHHHc
Confidence            9999999999975544455666777899999998765 45788999999999995  334 56888  999999999999


Q ss_pred             CCCceEEEEeC
Q 020928          309 GGNAIKVMFNL  319 (319)
Q Consensus       309 ~~~~gkvvi~~  319 (319)
                      ++..||+|+++
T Consensus       338 ~~~~gkvvi~~  348 (375)
T PLN02178        338 SDVRYRFVIDV  348 (375)
T ss_pred             CCCceEEEEEe
Confidence            98889999874

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=1.1e-44  Score=325.26  Aligned_cols=308  Identities=28%  Similarity=0.449  Sum_probs=251.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++.+.|...   ...+|.++|||++|+|+++|+++++|++||||++.+..+|++|.+|.+|++++|.+
T Consensus        32 Irv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~  108 (368)
T cd08300          32 IKILATGVCHTDAYTLSGADP---EGLFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQK  108 (368)
T ss_pred             EEEEEEEechhhHHHhcCCCc---cCCCCceeccceeEEEEEeCCCCccCCCCCEEEEcCCCCCCCChhhcCCCcCcCCC
Confidence            689999999999999887532   12579999999999999999999999999999998888999999999999999986


Q ss_pred             cccc---cC-----------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCC
Q 020928           81 MRFF---GS-----------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPET  138 (319)
Q Consensus        81 ~~~~---~~-----------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~  138 (319)
                      ....   +.                 ....|+|+||+.+++..++++|+++++++|+.++ ++.+||+++ +.+++++++
T Consensus       109 ~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~  188 (368)
T cd08300         109 IRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGS  188 (368)
T ss_pred             ccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCC
Confidence            4311   00                 0124799999999999999999999999999886 778999987 558899999


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++.++++...++++.+.+.+++   ++++|++||++|
T Consensus       189 ~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~---~~g~d~vid~~g  265 (368)
T cd08300         189 TVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMT---DGGVDYTFECIG  265 (368)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHh---CCCCcEEEECCC
Confidence            99999999999999999999999678999999999999999999998876443234666665554   348999999999


Q ss_pred             ChHHHHHHHHhhcCC-CEEEEecccCC--cccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeee
Q 020928          219 FDKTMSTALNATRPG-GKVCLIGLAKT--EMTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHR  291 (319)
Q Consensus       219 ~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~  291 (319)
                      ++..+..++++++++ |+++.+|....  ........+. +...+.++...    ..++.++++++.+|++++.+.++++
T Consensus       266 ~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~  344 (368)
T cd08300         266 NVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHT  344 (368)
T ss_pred             ChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeee
Confidence            877889999999886 99999986532  1222222222 33455554322    4568889999999999877888999


Q ss_pred             ecCChhhHHHHHHHHhcCCCceEEEEe
Q 020928          292 FGFTQKEIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       292 ~~~~~~~~~~a~~~~~~~~~~gkvvi~  318 (319)
                      |+|  +++++|++.+.+++. .|++++
T Consensus       345 ~~l--e~~~~A~~~~~~~~~-~k~~~~  368 (368)
T cd08300         345 MPL--DEINEAFDLMHAGKS-IRTVVK  368 (368)
T ss_pred             EcH--HHHHHHHHHHhCCCC-ceeeeC
Confidence            999  999999999988754 699875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=1.2e-44  Score=323.09  Aligned_cols=309  Identities=22%  Similarity=0.424  Sum_probs=258.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|++...+...  ...++|.++|||++|+|+++|+++..+ +||||+..+..+|++|.+|+.|++++|..
T Consensus        28 Vrv~~~gic~sD~~~~~~~~~--~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV~~~~~~~cg~c~~c~~g~~~~c~~  104 (349)
T TIGR03201        28 VKVAGCGVCHTDLSYYYMGVR--TNHALPLALGHEISGRVIQAGAGAASW-IGKAVIVPAVIPCGECELCKTGRGTICRA  104 (349)
T ss_pred             EEEEEEeecccchHHHcCCCC--ccCCCCeeccccceEEEEEeCCCcCCC-CCCEEEECCCCCCCCChhhhCcCcccCCC
Confidence            689999999999998744321  123568999999999999999999887 99999999999999999999999999987


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCC------CCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPD------NVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTL  153 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~------~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai  153 (319)
                      ..+.+. ..+|+|+||+.++.+.++++|+      ++++++++.+ .++.++|+++++.+++++++|+|+|+|++|++++
T Consensus       105 ~~~~g~-~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~~~~~~~g~~VlV~G~G~vG~~a~  183 (349)
T TIGR03201       105 QKMPGN-DMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQAGLKKGDLVIVIGAGGVGGYMV  183 (349)
T ss_pred             CCccCc-CCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHH
Confidence            655443 3479999999999999999999      8999888876 4788999999888899999999999999999999


Q ss_pred             HHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCC-cchhHHHHHhhhhcCCCcc----EEEEccCChHHHHHHHH
Q 020928          154 LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI-EDVDTDVGKIQNAMGSGID----VSFDCVGFDKTMSTALN  228 (319)
Q Consensus       154 ~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~i~~~~~~~~~~~d----~v~d~~g~~~~~~~~~~  228 (319)
                      |+|+..|+ .|++++++++++++++++|++.++++.... +++.+.+++++  .+.++|    ++|||+|+....+.+++
T Consensus       184 ~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t--~~~g~d~~~d~v~d~~g~~~~~~~~~~  260 (349)
T TIGR03201       184 QTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFA--KARGLRSTGWKIFECSGSKPGQESALS  260 (349)
T ss_pred             HHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhc--ccCCCCCCcCEEEECCCChHHHHHHHH
Confidence            99999999 688889999999999999998887753321 23444444443  245675    89999998877888999


Q ss_pred             hhcCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHh
Q 020928          229 ATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA  307 (319)
Q Consensus       229 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~  307 (319)
                      +++++|+++.+|.......+....++.++.++.+.+.. ..+++++++++++|++++.+.+ ++|++  +++++|++.+.
T Consensus       261 ~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~g~i~~~~~i-~~~~l--~~~~~A~~~~~  337 (349)
T TIGR03201       261 LLSHGGTLVVVGYTMAKTEYRLSNLMAFHARALGNWGCPPDRYPAALDLVLDGKIQLGPFV-ERRPL--DQIEHVFAAAH  337 (349)
T ss_pred             HHhcCCeEEEECcCCCCcccCHHHHhhcccEEEEEecCCHHHHHHHHHHHHcCCCCcccce-EEecH--HHHHHHHHHHH
Confidence            99999999999976544455555667778888888754 5578999999999999877666 46888  99999999999


Q ss_pred             cCCCceEEEEeC
Q 020928          308 QGGNAIKVMFNL  319 (319)
Q Consensus       308 ~~~~~gkvvi~~  319 (319)
                      +++..+|++++.
T Consensus       338 ~~~~~~k~~~~~  349 (349)
T TIGR03201       338 HHKLKRRAILTP  349 (349)
T ss_pred             cCCccceEEecC
Confidence            998899999863

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=6.8e-45  Score=318.27  Aligned_cols=282  Identities=29%  Similarity=0.415  Sum_probs=235.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||+.|+..++|.  .....++|+|+|.|++|+|+++|++|++|++||||+... .                  
T Consensus        32 VrV~a~gvN~~D~~~r~G~--~~~~~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~-~------------------   90 (326)
T COG0604          32 VRVKAAGVNPIDVLVRQGL--APPVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALG-G------------------   90 (326)
T ss_pred             EEEEEeecChHHHHhccCC--CCCCCCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEcc-C------------------
Confidence            6899999999999999986  222356899999999999999999999999999999742 0                  


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                            ...+|+|+||+.+|++.++++|+++|+++||+++ .+.|||+++.. .++++|++|||+| +|++|++++||||
T Consensus        91 ------~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk  164 (326)
T COG0604          91 ------VGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAK  164 (326)
T ss_pred             ------CCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHH
Confidence                  0047999999999999999999999999999996 78899999965 8899999999997 7999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      .+|+ .++++.+++++.++++++|++++++|..  +++.+.+++++.  +.++|+|||++|++ .+..++++|+++|+++
T Consensus       165 ~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~--~~~~~~v~~~t~--g~gvDvv~D~vG~~-~~~~~l~~l~~~G~lv  238 (326)
T COG0604         165 ALGA-TVVAVVSSSEKLELLKELGADHVINYRE--EDFVEQVRELTG--GKGVDVVLDTVGGD-TFAASLAALAPGGRLV  238 (326)
T ss_pred             HcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCc--ccHHHHHHHHcC--CCCceEEEECCCHH-HHHHHHHHhccCCEEE
Confidence            9998 4555556677777999999999999754  458888877763  56899999999987 8888999999999999


Q ss_pred             EecccC--CcccccchHHHhcCcEEEEeecc-C------CCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhc
Q 020928          238 LIGLAK--TEMTVALTPAAAREVDVIGIFRY-R------STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ  308 (319)
Q Consensus       238 ~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~-~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~  308 (319)
                      .+|...  ....++...+..+.+...+.... .      +.+.++++++.+|.+  ++.+..+|++  ++..++..+...
T Consensus       239 ~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l--~~~i~~~~~l--~e~~~a~a~~~~  314 (326)
T COG0604         239 SIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKL--KPVIDRVYPL--AEAPAAAAHLLL  314 (326)
T ss_pred             EEecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCC--cceeccEech--hhhHHHHHHHHc
Confidence            999654  33345566677788888877665 2      356779999999999  6777788999  886565555444


Q ss_pred             -CCCceEEEEeC
Q 020928          309 -GGNAIKVMFNL  319 (319)
Q Consensus       309 -~~~~gkvvi~~  319 (319)
                       ++..||+|+++
T Consensus       315 ~~~~~GKvvl~~  326 (326)
T COG0604         315 ERRTTGKVVLKV  326 (326)
T ss_pred             ccCCcceEEEeC
Confidence             48999999974

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=4.9e-44  Score=320.82  Aligned_cols=307  Identities=28%  Similarity=0.467  Sum_probs=254.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|+|++|++.+.|..    +..+|.++|||++|+|+++|+++++|++||||++.+..+|++|.+|..|.+++|+.
T Consensus        32 Vkv~~~gi~~sD~~~~~g~~----~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~  107 (365)
T cd08277          32 IKMLATSVCHTDILAIEGFK----ATLFPVILGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQK  107 (365)
T ss_pred             EEEEEEeechhhHHHhcCCC----CCCCCeecccceeEEEEeeCCCCccCCCCCEEEECCCCCCCCCchhcCcCcccCcC
Confidence            68999999999999988753    24578999999999999999999999999999998888999999999999999987


Q ss_pred             cccccC-------------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCe
Q 020928           81 MRFFGS-------------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETN  139 (319)
Q Consensus        81 ~~~~~~-------------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~  139 (319)
                      ..+...                   ....|+|+||+.++.+.++++|+++++++|+.++ ++.+||+++ +.++++++++
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~  187 (365)
T cd08277         108 YRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGST  187 (365)
T ss_pred             ccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCE
Confidence            543211                   0125899999999999999999999999999886 788999987 5588999999


Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      |+|+|+|++|++++|+|+.+|+++|++++++++++++++++|++.+++......++.+.+.++.   +.++|++||++|+
T Consensus       188 vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~---~~g~d~vid~~g~  264 (365)
T cd08277         188 VAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMT---GGGVDYSFECTGN  264 (365)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHh---CCCCCEEEECCCC
Confidence            9999999999999999999999778899999999999999999888775432233445555443   3579999999998


Q ss_pred             hHHHHHHHHhhcCC-CEEEEecccCC-cccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeeeec
Q 020928          220 DKTMSTALNATRPG-GKVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHRFG  293 (319)
Q Consensus       220 ~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~  293 (319)
                      ...+...+++++++ |+++.+|.... ..++....+.. ++++.+++..    ...+++++++++++++++.+.++++|+
T Consensus       265 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  343 (365)
T cd08277         265 ADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLP  343 (365)
T ss_pred             hHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEc
Confidence            76888999999875 99999986542 22333334443 7888877654    346889999999999988888999999


Q ss_pred             CChhhHHHHHHHHhcCCCceEEEEe
Q 020928          294 FTQKEIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       294 ~~~~~~~~a~~~~~~~~~~gkvvi~  318 (319)
                      +  +|+++|++.+++++ ..|++++
T Consensus       344 l--~~~~~A~~~~~~~~-~~k~~i~  365 (365)
T cd08277         344 F--EEINKGFDLMKSGE-CIRTVIT  365 (365)
T ss_pred             h--hhHHHHHHHHHCCC-CceEeeC
Confidence            9  99999999998886 4688874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=4.6e-44  Score=316.26  Aligned_cols=293  Identities=22%  Similarity=0.290  Sum_probs=248.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC-ccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|++.++|....   ..+|.++|||++|+|+++|+++++|++||||+..+. .+|+.|.+|..|.+++|+
T Consensus        32 Vkv~~~gi~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~  108 (329)
T TIGR02822        32 VRVRACGVCRTDLHVSEGDLPV---HRPRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCP  108 (329)
T ss_pred             EEEEEEeecchhHHHHcCCCCC---CCCCccCCcceEEEEEEECCCCcccCCCCEEEEcCccCcCCCChHHhCcCcccCC
Confidence            6899999999999999875311   234799999999999999999999999999987554 379999999999999999


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      +..+++. ..+|+|+||+.+++..++++|+++++++++.+. ++.+||+++++++++++++|||+|+|++|++++|+|+.
T Consensus       109 ~~~~~g~-~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~  187 (329)
T TIGR02822       109 ASRYTGW-DTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLRASLPPGGRLGLYGFGGSAHLTAQVALA  187 (329)
T ss_pred             CcccCCc-ccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHH
Confidence            8776543 357999999999999999999999999998664 77899999988899999999999999999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ +|++++++++++++++++|+++++++...              ...++|+++++.+....+...+++++++|+++.
T Consensus       188 ~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~--------------~~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~  252 (329)
T TIGR02822       188 QGA-TVHVMTRGAAARRLALALGAASAGGAYDT--------------PPEPLDAAILFAPAGGLVPPALEALDRGGVLAV  252 (329)
T ss_pred             CCC-eEEEEeCChHHHHHHHHhCCceecccccc--------------CcccceEEEECCCcHHHHHHHHHhhCCCcEEEE
Confidence            999 68888899999999999999998763211              023689999988877789999999999999999


Q ss_pred             ecccCC-cccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEE
Q 020928          239 IGLAKT-EMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       239 ~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      +|.... ...+....+..+++++.+++.. ...+.++++++++|+++   .++++|+|  +|+++|++.+.+++..||+|
T Consensus       253 ~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~---~i~~~~~l--~~~~~A~~~~~~~~~~Gkvv  327 (329)
T TIGR02822       253 AGIHLTDTPPLNYQRHLFYERQIRSVTSNTRADAREFLELAAQHGVR---VTTHTYPL--SEADRALRDLKAGRFDGAAV  327 (329)
T ss_pred             EeccCccCCCCCHHHHhhCCcEEEEeecCCHHHHHHHHHHHHhCCCe---eEEEEEeH--HHHHHHHHHHHcCCCceEEE
Confidence            997432 2244555567788999887664 44678899999999984   35688988  99999999999999999998


Q ss_pred             E
Q 020928          317 F  317 (319)
Q Consensus       317 i  317 (319)
                      +
T Consensus       328 l  328 (329)
T TIGR02822       328 L  328 (329)
T ss_pred             e
Confidence            7

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=1.9e-43  Score=317.25  Aligned_cols=318  Identities=76%  Similarity=1.292  Sum_probs=268.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|++++.+...+.+....|.++|||++|+|+++|+++.+|++||+|++.+..+|+.|..|..|.+.+|+.
T Consensus        46 Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~  125 (364)
T PLN02702         46 VRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPE  125 (364)
T ss_pred             EEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCC
Confidence            68999999999999987643333333468899999999999999999999999999999889999999999999999987


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+++.....|+|+||+.++...++++|+++++++|++..++.+++++++..+++++++++|+|+|++|++++|+|+..|
T Consensus       126 ~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G  205 (364)
T PLN02702        126 MKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVTMLAARAFG  205 (364)
T ss_pred             ccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            65554444579999999999999999999999999987666777888887788999999999999999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ++.++++++++++.++++++|++.++++.....++...+.++.+..+.++|++||++|+...+...+++++++|+++.+|
T Consensus       206 ~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g  285 (364)
T PLN02702        206 APRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVG  285 (364)
T ss_pred             CCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence            97788888899999999999999887765444566666655543345689999999997668899999999999999998


Q ss_pred             ccCCcccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEEe
Q 020928          241 LAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  318 (319)
                      .......+......++++++.+++.....++.++++++++.+.+.+.+.++|+++++++++|++.+.+++..+|+++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        286 MGHNEMTVPLTPAAAREVDVVGVFRYRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN  363 (364)
T ss_pred             cCCCCCcccHHHHHhCccEEEEeccChHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence            643333345556778899999887666678899999999998665667788777668999999999988888999985

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=2.3e-43  Score=315.23  Aligned_cols=312  Identities=38%  Similarity=0.632  Sum_probs=264.4

Q ss_pred             CCcceEeeccCCccccccccc-cc-------cccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRC-AN-------FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKA   72 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~-~~-------~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~   72 (319)
                      |||.++++|++|++.+.+... ..       ....+|.++|||++|+|+++|+++++|++||+|++.+..+|+.|.+|..
T Consensus        29 V~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~  108 (351)
T cd08233          29 IKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKR  108 (351)
T ss_pred             EEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEeCCCCCCCCCCCEEEECCCCCCCCChHHhC
Confidence            689999999999987653211 00       0123689999999999999999999999999999988889999999999


Q ss_pred             CCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHH
Q 020928           73 GSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVT  152 (319)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~a  152 (319)
                      |.+.+|+...+.+.....|+|+||+.++...++++|+++++++|+++.++.+||+++..++++++++|+|+|+|++|+++
T Consensus       109 ~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~ta~~~l~~~~~~~g~~vlI~g~g~vG~~a  188 (351)
T cd08233         109 GLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWHAVRRSGFKPGDTALVLGAGPIGLLT  188 (351)
T ss_pred             cCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHH
Confidence            99999987765544334799999999999999999999999999877788899999977899999999999999999999


Q ss_pred             HHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcC
Q 020928          153 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRP  232 (319)
Q Consensus       153 i~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  232 (319)
                      +|+|+.+|++.|+++++++++.++++++|++.++++.  ..++.+.+.++.  .+.++|++||++|+...+..+++++++
T Consensus       189 ~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~--~~~~~~~l~~~~--~~~~~d~vid~~g~~~~~~~~~~~l~~  264 (351)
T cd08233         189 ILALKAAGASKIIVSEPSEARRELAEELGATIVLDPT--EVDVVAEVRKLT--GGGGVDVSFDCAGVQATLDTAIDALRP  264 (351)
T ss_pred             HHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCC--ccCHHHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHhccC
Confidence            9999999997788888999999999999999888753  345666655543  345799999999976688999999999


Q ss_pred             CCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhH-HHHHHHHhcCC
Q 020928          233 GGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEI-EDAFEISAQGG  310 (319)
Q Consensus       233 ~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~  310 (319)
                      +|+++.+|.......+....+..+++++.+.+.+ .+.++++++++++|++++.+.++++|++  +++ ++|++.+.+++
T Consensus       265 ~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~l--~e~~~~a~~~~~~~~  342 (351)
T cd08233         265 RGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFEEVIDLLASGKIDAEPLITSRIPL--EDIVEKGFEELINDK  342 (351)
T ss_pred             CCEEEEEccCCCCCccCHHHHHhhCcEEEEEeccCcchHHHHHHHHHcCCCChHHheEEEecH--HHHHHHHHHHHHhCC
Confidence            9999999975544455666677899999998766 5789999999999999877778888998  996 78999999887


Q ss_pred             C-ceEEEEe
Q 020928          311 N-AIKVMFN  318 (319)
Q Consensus       311 ~-~gkvvi~  318 (319)
                      . .+|+|+.
T Consensus       343 ~~~~k~v~~  351 (351)
T cd08233         343 EQHVKILVS  351 (351)
T ss_pred             CCceEEEeC
Confidence            6 4999974

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=9.7e-44  Score=317.95  Aligned_cols=303  Identities=24%  Similarity=0.349  Sum_probs=242.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++.++|.........+|.++|||++|+|+++|++ ++|++||||+..+..+|+.|.+|..|++++|+.
T Consensus        30 Vkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~  108 (355)
T cd08230          30 VRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCET  108 (355)
T ss_pred             EEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCCCCCEEEeccccCCCcChhhhCcCcccCCC
Confidence            6899999999999999875321111246899999999999999999 999999999998888999999999999999987


Q ss_pred             cccc--cCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHh-------cCCCCCCeEEEECCCHHHHH
Q 020928           81 MRFF--GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR-------ANVGPETNVMIMGSGPIGLV  151 (319)
Q Consensus        81 ~~~~--~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~-------~~~~~~~~vlI~G~g~vG~~  151 (319)
                      ..++  +....+|+|+||+.++++.++++|++++ +++++..++++++.++..       .+++++++|+|+|+|++|++
T Consensus       109 ~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~  187 (355)
T cd08230         109 GEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLL  187 (355)
T ss_pred             cceeccCcCCCCccceeEEEeccccEEECCCCCC-cceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHH
Confidence            6543  2223579999999999999999999999 666655666665554422       33678999999999999999


Q ss_pred             HHHHHHHcCCCeEEEecC---ChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHH
Q 020928          152 TLLAARAFGAPRIIITDV---DVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALN  228 (319)
Q Consensus       152 ai~la~~~g~~~vv~v~~---~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~  228 (319)
                      ++|+|+..|+ +|+++++   +++++++++++|++.+ ++..  +++.+ .   .  ...++|+|||++|++..+...++
T Consensus       188 a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~v-~~~~--~~~~~-~---~--~~~~~d~vid~~g~~~~~~~~~~  257 (355)
T cd08230         188 AALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATYV-NSSK--TPVAE-V---K--LVGEFDLIIEATGVPPLAFEALP  257 (355)
T ss_pred             HHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEe-cCCc--cchhh-h---h--hcCCCCEEEECcCCHHHHHHHHH
Confidence            9999999999 6887876   6889999999999864 4322  23322 1   1  13579999999998767899999


Q ss_pred             hhcCCCEEEEecccCC--ccccc----chHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCC----CCCCceeeeecCChh
Q 020928          229 ATRPGGKVCLIGLAKT--EMTVA----LTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKI----DVKPLITHRFGFTQK  297 (319)
Q Consensus       229 ~l~~~G~~v~~g~~~~--~~~~~----~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~  297 (319)
                      +++++|+++.+|....  ..++.    ...+.++++++.|+... .++++++++++.++.+    .+.+.++++|++  +
T Consensus       258 ~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l--~  335 (355)
T cd08230         258 ALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQAVEDLAQWKYRWPGVLERLITRRVPL--E  335 (355)
T ss_pred             HccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHHHHHHHHhcccccccchHHheeeeecH--H
Confidence            9999999999997543  22333    34577899999998765 5678899999998873    246778899999  9


Q ss_pred             hHHHHHHHHhcCCCceEEEEeC
Q 020928          298 EIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       298 ~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++.+|++.++++.  +|+++++
T Consensus       336 ~~~~a~~~~~~~~--~K~v~~~  355 (355)
T cd08230         336 EFAEALTEKPDGE--IKVVIEW  355 (355)
T ss_pred             HHHHHHHhcccCC--eEEEeeC
Confidence            9999999887553  5999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=4.5e-43  Score=311.55  Aligned_cols=297  Identities=23%  Similarity=0.356  Sum_probs=233.0

Q ss_pred             CCcceEeeccCCcccccccccccc-ccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANF-IVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~-~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||+++|||++|+++++|...... ...+|.++|||++|+|+++|.+  +|++||||+..+..+|+. ..|  +..++|+
T Consensus        30 Vkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~~vGdrV~~~~~~~~~~-~~~--~~~~~c~  104 (341)
T cd08237          30 VRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TYKVGTKVVMVPNTPVEK-DEI--IPENYLP  104 (341)
T ss_pred             EEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--ccCCCCEEEECCCCCchh-ccc--chhccCC
Confidence            689999999999999988542211 2357999999999999998864  799999999987777763 344  3456676


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHh---cCCCCCCeEEEECCCHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR---ANVGPETNVMIMGSGPIGLVTLLAA  156 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~---~~~~~~~~vlI~G~g~vG~~ai~la  156 (319)
                      ...+.+. ..+|+|+||+.++++.++++|+++++++|+++.+++++|+++..   ..++++++|||+|+|++|++++|+|
T Consensus       105 ~~~~~g~-~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a  183 (341)
T cd08237         105 SSRFRSS-GYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFTELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLL  183 (341)
T ss_pred             CcceeEe-cCCCceEEEEEEchHHeEECCCCCChHHhhhhchHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHH
Confidence            6554432 24799999999999999999999999999988899999999853   4578999999999999999999999


Q ss_pred             HH-cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCC---hHHHHHHHHhhcC
Q 020928          157 RA-FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGF---DKTMSTALNATRP  232 (319)
Q Consensus       157 ~~-~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~  232 (319)
                      +. .|..+|++++++++|++++++++++..++      +       +.+  ..++|+|||++|+   +..+..+++++++
T Consensus       184 ~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~------~-------~~~--~~g~d~viD~~G~~~~~~~~~~~~~~l~~  248 (341)
T cd08237         184 KQIYPESKLVVFGKHQEKLDLFSFADETYLID------D-------IPE--DLAVDHAFECVGGRGSQSAINQIIDYIRP  248 (341)
T ss_pred             HHhcCCCcEEEEeCcHhHHHHHhhcCceeehh------h-------hhh--ccCCcEEEECCCCCccHHHHHHHHHhCcC
Confidence            86 66657888999999999998866543221      1       111  2369999999994   4578899999999


Q ss_pred             CCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcC---CCCCCCceeeeecCC-hhhHHHHHHHHh
Q 020928          233 GGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSG---KIDVKPLITHRFGFT-QKEIEDAFEISA  307 (319)
Q Consensus       233 ~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~-~~~~~~a~~~~~  307 (319)
                      +|+++.+|....+.++....+..+++++.++... .++++++++++.++   ...+.+.++++|+++ ++++.++++.+.
T Consensus       249 ~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~  328 (341)
T cd08237         249 QGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRSTREDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDL  328 (341)
T ss_pred             CcEEEEEeecCCCcccCHHHHhhCceEEEEecccCHHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHh
Confidence            9999999975544455666678899999998765 45688999999999   334678888888872 245666666655


Q ss_pred             cCCCceEEEEeC
Q 020928          308 QGGNAIKVMFNL  319 (319)
Q Consensus       308 ~~~~~gkvvi~~  319 (319)
                      ++ ..||+|+++
T Consensus       329 ~~-~~gKvvi~~  339 (341)
T cd08237         329 TN-SWGKTVMEW  339 (341)
T ss_pred             hc-CcceEEEEe
Confidence            54 679999864

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=7.8e-42  Score=305.46  Aligned_cols=301  Identities=21%  Similarity=0.299  Sum_probs=243.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC-ccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|++.+.|...   ...+|.++|||++|+|+++|+++++|++||+|+..+. .+|++|.+|..|.+++|.
T Consensus        39 Vrv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~E~~G~Vv~vG~~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~  115 (357)
T PLN02514         39 IKVIYCGICHTDLHQIKNDLG---MSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCN  115 (357)
T ss_pred             EEEEEeccChHHHHhhcCCcC---cCCCCccCCceeeEEEEEECCCcccccCCCEEEEcCccccCCCChhHhCCCcccCC
Confidence            689999999999999876431   1246899999999999999999999999999986443 379999999999999998


Q ss_pred             Ccccc------cCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEECCCHHHHH
Q 020928           80 EMRFF------GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGSGPIGLV  151 (319)
Q Consensus        80 ~~~~~------~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G~g~vG~~  151 (319)
                      ...+.      .+....|+|+||+.++...++++|+++++++|+.++ .+.+||+++.. ...+++++++|+|+|++|++
T Consensus       116 ~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~  195 (357)
T PLN02514        116 KRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHM  195 (357)
T ss_pred             CccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHH
Confidence            75321      111246999999999999999999999999998775 66889999865 55689999999999999999


Q ss_pred             HHHHHHHcCCCeEEEecCChhHH-HHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhh
Q 020928          152 TLLAARAFGAPRIIITDVDVQRL-SIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT  230 (319)
Q Consensus       152 ai~la~~~g~~~vv~v~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l  230 (319)
                      ++|+|+..|+ .+++++++++++ +.++++|++.+++...  .   ..+.++.    .++|++||++|....+..+++++
T Consensus       196 av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~--~---~~~~~~~----~~~D~vid~~g~~~~~~~~~~~l  265 (357)
T PLN02514        196 GVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLVSSD--A---AEMQEAA----DSLDYIIDTVPVFHPLEPYLSLL  265 (357)
T ss_pred             HHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecCCC--h---HHHHHhc----CCCcEEEECCCchHHHHHHHHHh
Confidence            9999999999 466666666555 4556799987765322  1   2233322    36999999999766888999999


Q ss_pred             cCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcC
Q 020928          231 RPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG  309 (319)
Q Consensus       231 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  309 (319)
                      +++|+++.+|.......+....+..+++++.+++.. ..+++++++++++|++  .+.+ ++|++  +++.+|++.+.++
T Consensus       266 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~l--~~~i-~~~~l--~~~~~A~~~~~~~  340 (357)
T PLN02514        266 KLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFIGSMKETEEMLEFCKEKGL--TSMI-EVVKM--DYVNTAFERLEKN  340 (357)
T ss_pred             ccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEecCCHHHHHHHHHHHHhCCC--cCcE-EEEcH--HHHHHHHHHHHcC
Confidence            999999999976544455566677899999998765 3468899999999987  4555 57888  9999999999999


Q ss_pred             CCceEEEEeC
Q 020928          310 GNAIKVMFNL  319 (319)
Q Consensus       310 ~~~gkvvi~~  319 (319)
                      ...||+++++
T Consensus       341 ~~~gk~v~~~  350 (357)
T PLN02514        341 DVRYRFVVDV  350 (357)
T ss_pred             CCceeEEEEc
Confidence            8889999864

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=1.2e-42  Score=277.87  Aligned_cols=277  Identities=26%  Similarity=0.355  Sum_probs=236.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||..|+|+|..|.-+++|...   +.+.|+++|.|++|+|+.+|++|++|++||||+..                     
T Consensus        40 iknka~GlNfid~y~RkGlY~---~~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl---------------------   95 (336)
T KOG1197|consen   40 IKNKACGLNFIDLYFRKGLYD---PAPLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYL---------------------   95 (336)
T ss_pred             EeehhcCccHHHHHHhccccC---CCCCCcCCCcccceEEEEecCCccccccccEEEEe---------------------
Confidence            578899999999988887541   56889999999999999999999999999999863                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                             ++.|.|+|+..+|...++++|+.+++++||++. -+.|||.-+++ .++++|++||++. +|++|+++.|+++
T Consensus        96 -------~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~r  168 (336)
T KOG1197|consen   96 -------NPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLR  168 (336)
T ss_pred             -------ccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHH
Confidence                   368999999999999999999999999999775 77888887766 8999999999996 7999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .+|.+.++.++++.+++.|+.+.|+|.  .+|+.+.+.+++  ++.|+|+++|.+|.+ .+...+.+|++.|.++
T Consensus       169 a~~a-~tI~~asTaeK~~~akenG~~h~I~y~--~eD~v~~V~kiT--ngKGVd~vyDsvG~d-t~~~sl~~Lk~~G~mV  242 (336)
T KOG1197|consen  169 AVGA-HTIATASTAEKHEIAKENGAEHPIDYS--TEDYVDEVKKIT--NGKGVDAVYDSVGKD-TFAKSLAALKPMGKMV  242 (336)
T ss_pred             hcCc-EEEEEeccHHHHHHHHhcCCcceeecc--chhHHHHHHhcc--CCCCceeeeccccch-hhHHHHHHhccCceEE
Confidence            9999 788888999999999999999999874  468888888886  488999999999976 8999999999999999


Q ss_pred             EecccC-CcccccchHHHhcCcEEEEeecc-----CC----CHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHh
Q 020928          238 LIGLAK-TEMTVALTPAAAREVDVIGIFRY-----RS----TWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA  307 (319)
Q Consensus       238 ~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-----~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~  307 (319)
                      .+|+.. ...+++...+..+.+++......     ..    -..+++.++.+|.+  ++.+.++|++  +++.+|+..++
T Consensus       243 SfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~l--k~~I~~~ypl--s~vadA~~die  318 (336)
T KOG1197|consen  243 SFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHL--KIHIDHVYPL--SKVADAHADIE  318 (336)
T ss_pred             EeccccCCCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCcc--ceeeeeecch--HHHHHHHHHHH
Confidence            999643 34455555565565555432221     22    23467888888988  7778999999  99999999999


Q ss_pred             cCCCceEEEEe
Q 020928          308 QGGNAIKVMFN  318 (319)
Q Consensus       308 ~~~~~gkvvi~  318 (319)
                      +.+..||+++-
T Consensus       319 srktvGkvlLl  329 (336)
T KOG1197|consen  319 SRKTVGKVLLL  329 (336)
T ss_pred             hhhccceEEEe
Confidence            99999999974

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=5.9e-41  Score=300.83  Aligned_cols=310  Identities=29%  Similarity=0.512  Sum_probs=255.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCC------CCCCCEEEEccCccCCCCccccCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS------LEVGDRVALEPGISCGHCSLCKAGS   74 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~------~~~Gd~V~~~~~~~~~~~~~~~~~~   74 (319)
                      |||.++++|++|+....|....   ..+|.++|||++|+|+++|+++++      |++||+|++.+..+|+.|..|+.|.
T Consensus        30 V~v~a~~l~~~d~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~  106 (361)
T cd08231          30 VRVRLAGVCGSDVHTVAGRRPR---VPLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGD  106 (361)
T ss_pred             EEEEEEeecCccHHHhcCCCCC---CCCCcccccCCceEEEEeCCCccccccCCccCCCCEEEEcccCCCCCChhHhCcC
Confidence            6899999999999998875311   457899999999999999999986      9999999999888999999999999


Q ss_pred             CCCCCCcccccCC------CCCCcceeEEeecCC-ceEeCCCCCChhhhhcc-chhHHHHHHHHh-cCCCCCCeEEEECC
Q 020928           75 YNLCPEMRFFGSP------PTNGSLAHKVVHPAK-LCYKLPDNVSLEEGAMC-EPLSVGVHACRR-ANVGPETNVMIMGS  145 (319)
Q Consensus        75 ~~~~~~~~~~~~~------~~~g~~~e~~~~~~~-~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~~~~vlI~G~  145 (319)
                      .++|....+++..      ...|+|+||+.++++ .++++|+++++++|+++ .++.|||+++.+ ...+++++|||+|+
T Consensus       107 ~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~  186 (361)
T cd08231         107 PTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGA  186 (361)
T ss_pred             ccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECC
Confidence            9999876655432      236999999999986 79999999999988887 588999999976 45569999999999


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCc-chhHHHHHhhhhcCCCccEEEEccCChHHHH
Q 020928          146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE-DVDTDVGKIQNAMGSGIDVSFDCVGFDKTMS  224 (319)
Q Consensus       146 g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~  224 (319)
                      |++|++++|+|+.+|++.|+++++++++.++++++|++.++++..... ++...+.++.  .+.++|++||++|+...+.
T Consensus       187 g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~--~~~~~d~vid~~g~~~~~~  264 (361)
T cd08231         187 GPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDIT--GGRGADVVIEASGHPAAVP  264 (361)
T ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHh--CCCCCcEEEECCCChHHHH
Confidence            999999999999999966888888999999999999988877543211 1112333332  3568999999999866788


Q ss_pred             HHHHhhcCCCEEEEecccCC--cccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcC--CCCCCCceeeeecCChhhH
Q 020928          225 TALNATRPGGKVCLIGLAKT--EMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSG--KIDVKPLITHRFGFTQKEI  299 (319)
Q Consensus       225 ~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~  299 (319)
                      ..+++++++|+++.+|....  ...+....+..+++.+.+++.. .+.+.++++++.++  .+.+.+.++++|++  +++
T Consensus       265 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l--~~~  342 (361)
T cd08231         265 EGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFPFAELVTHRYPL--EDI  342 (361)
T ss_pred             HHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccCCchhHHHHHHHHHhccCcCCchhheeeeeeH--HHH
Confidence            99999999999999986432  2234444568889999888765 56789999999998  55567777888999  999


Q ss_pred             HHHHHHHhcCCCceEEEEe
Q 020928          300 EDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       300 ~~a~~~~~~~~~~gkvvi~  318 (319)
                      ++|++.++++. .+|++|+
T Consensus       343 ~~a~~~~~~~~-~~k~vi~  360 (361)
T cd08231         343 NEALELAESGT-ALKVVID  360 (361)
T ss_pred             HHHHHHHHcCC-ceEEEeC
Confidence            99999998876 4899986

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=9.4e-41  Score=297.49  Aligned_cols=312  Identities=51%  Similarity=0.936  Sum_probs=258.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|+.|++.+.+...+.+....|.++|+|++|+|+++|+++++|++||+|++.+..+|+.|.+|+.|.+++|++
T Consensus        27 V~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  106 (343)
T cd05285          27 VRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPD  106 (343)
T ss_pred             EEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEEccccCCCCChhHhCcCcccCcC
Confidence            58999999999998765332222233467889999999999999999999999999998888999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+.+.....|+|+||+.++++.++++|+++++++|+.+.++.+|+++++.++++++++++|.|+|++|++++|+|+.+|
T Consensus       107 ~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G  186 (343)
T cd05285         107 MRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGVHACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFG  186 (343)
T ss_pred             ccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            75544334579999999999999999999999999988778888999887799999999999988999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcch---hHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDV---DTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      +++|+++.+++++.++++++|++.++++..  .++   ...+.+..  .+.++|++|||.|+...++..+++++++|+++
T Consensus       187 ~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~~~~~~~~~--~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v  262 (343)
T cd05285         187 ATKVVVTDIDPSRLEFAKELGATHTVNVRT--EDTPESAEKIAELL--GGKGPDVVIECTGAESCIQTAIYATRPGGTVV  262 (343)
T ss_pred             CcEEEEECCCHHHHHHHHHcCCcEEecccc--ccchhHHHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence            965888888899999999999998887543  232   44444433  35679999999998657889999999999999


Q ss_pred             EecccCCcccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC-CceEEE
Q 020928          238 LIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG-NAIKVM  316 (319)
Q Consensus       238 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~gkvv  316 (319)
                      .+|.......++.....++++++.++....+.+++++++++++.+.+.+...+++++  +++.+|++.+.+++ ..+|++
T Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l--~~~~~a~~~~~~~~~~~~k~~  340 (343)
T cd05285         263 LVGMGKPEVTLPLSAASLREIDIRGVFRYANTYPTAIELLASGKVDVKPLITHRFPL--EDAVEAFETAAKGKKGVIKVV  340 (343)
T ss_pred             EEccCCCCCccCHHHHhhCCcEEEEeccChHHHHHHHHHHHcCCCCchHhEEEEEeH--HHHHHHHHHHHcCCCCeeEEE
Confidence            998654333444456778888888877666778899999999987554556778888  99999999998884 568998


Q ss_pred             Ee
Q 020928          317 FN  318 (319)
Q Consensus       317 i~  318 (319)
                      |.
T Consensus       341 ~~  342 (343)
T cd05285         341 IE  342 (343)
T ss_pred             Ee
Confidence            74

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=2.4e-40  Score=294.53  Aligned_cols=307  Identities=26%  Similarity=0.504  Sum_probs=253.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|++...|...   ..++|.++|||++|+|+++|++++.|++||+|+..+..+|+.|.+|.+|++++|.+
T Consensus        29 V~v~~~gi~~~d~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  105 (339)
T PRK10083         29 VKVKLAGICGSDSHIYRGHNP---FAKYPRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTS  105 (339)
T ss_pred             EEEEEEEEcccchHHHcCCCC---cCCCCcccccceEEEEEEECCCCccCCCCCEEEEccccCCCCCccccCcCcccCCC
Confidence            689999999999998876431   12468999999999999999999999999999999989999999999999999988


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHH-c
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA-F  159 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~-~  159 (319)
                      +.+++. ..+|+|+||+.++...++++|+++++++++.+.++.+++++++..+++++++|+|+|+|++|++++|+|+. +
T Consensus       106 ~~~~~~-~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~  184 (339)
T PRK10083        106 LVVLGV-HRDGGFSEYAVVPAKNAHRIPDAIADQYAVMVEPFTIAANVTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVY  184 (339)
T ss_pred             CceEEE-ccCCcceeeEEechHHeEECcCCCCHHHHhhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            765433 34699999999999999999999999888766678888876677899999999999999999999999996 6


Q ss_pred             CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          160 GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       160 g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      |++.++++++++++.++++++|++.++++..  .++...+.   . .+.++|++||++|++..+...+++++++|+++.+
T Consensus       185 G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~~~~~~~---~-~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        185 NVKAVIVADRIDERLALAKESGADWVINNAQ--EPLGEALE---E-KGIKPTLIIDAACHPSILEEAVTLASPAARIVLM  258 (339)
T ss_pred             CCCEEEEEcCCHHHHHHHHHhCCcEEecCcc--ccHHHHHh---c-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            9977888999999999999999998877532  34433332   1 2345679999999776889999999999999999


Q ss_pred             cccCCcccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcC-CCceEEEEe
Q 020928          240 GLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG-GNAIKVMFN  318 (319)
Q Consensus       240 g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi~  318 (319)
                      |.......+....+..+++++.+.....+.+++++++++++++++.+.+.++|++  +++++|++.++++ ...+|+++.
T Consensus       259 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~l--~~~~~a~~~~~~~~~~~~kvvv~  336 (339)
T PRK10083        259 GFSSEPSEIVQQGITGKELSIFSSRLNANKFPVVIDWLSKGLIDPEKLITHTFDF--QHVADAIELFEKDQRHCCKVLLT  336 (339)
T ss_pred             ccCCCCceecHHHHhhcceEEEEEecChhhHHHHHHHHHcCCCChHHheeeeecH--HHHHHHHHHHhcCCCceEEEEEe
Confidence            8654322333334445777777765556678999999999999655456788888  9999999999865 467899986


Q ss_pred             C
Q 020928          319 L  319 (319)
Q Consensus       319 ~  319 (319)
                      +
T Consensus       337 ~  337 (339)
T PRK10083        337 F  337 (339)
T ss_pred             c
Confidence            4

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=4.1e-41  Score=294.88  Aligned_cols=277  Identities=18%  Similarity=0.239  Sum_probs=221.4

Q ss_pred             CCcceEeec-cCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYC-MQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~-~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||+++||| ++|+++++|.........+|.++|||++|+|+++|+++ +|++||||+..    |..|..|..       
T Consensus        30 Vkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~~~vGdrV~~~----~~~c~~~~~-------   97 (308)
T TIGR01202        30 VEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-GFRPGDRVFVP----GSNCYEDVR-------   97 (308)
T ss_pred             EEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-CCCCCCEEEEe----Ccccccccc-------
Confidence            689999996 79999887753211113579999999999999999998 69999999863    222333211       


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHc
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAF  159 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~  159 (319)
                              ...|+|+||+.++++.++++|++++++. +.+.+..+||+++++.. .++++++|+|+|++|++++|+|+++
T Consensus        98 --------~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~~~~~a~~~~~~~~-~~~~~vlV~G~G~vG~~a~q~ak~~  167 (308)
T TIGR01202        98 --------GLFGGASKRLVTPASRVCRLDPALGPQG-ALLALAATARHAVAGAE-VKVLPDLIVGHGTLGRLLARLTKAA  167 (308)
T ss_pred             --------ccCCcccceEEcCHHHceeCCCCCCHHH-HhhhHHHHHHHHHHhcc-cCCCcEEEECCCHHHHHHHHHHHHc
Confidence                    1259999999999999999999999864 55666789999997653 3688999999999999999999999


Q ss_pred             CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          160 GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       160 g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      |++.|++++..+++++.++++   .++++..   +           .+.++|++|||+|++..++.++++++++|+++.+
T Consensus       168 G~~~v~~~~~~~~rl~~a~~~---~~i~~~~---~-----------~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       168 GGSPPAVWETNPRRRDGATGY---EVLDPEK---D-----------PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             CCceEEEeCCCHHHHHhhhhc---cccChhh---c-----------cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEE
Confidence            997777777777777665543   3333211   0           1457999999999976789999999999999999


Q ss_pred             cccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEEe
Q 020928          240 GLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       240 g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  318 (319)
                      |......+++...++.+++++.++..+ .++++++++++++|++++.+.++++|++  +++++|++.+.++...+|++++
T Consensus       231 G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~g~i~~~~~it~~~~l--~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       231 GFYTEPVNFDFVPAFMKEARLRIAAEWQPGDLHAVRELIESGALSLDGLITHQRPA--SDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             eecCCCcccccchhhhcceEEEEecccchhHHHHHHHHHHcCCCChhhccceeecH--HHHHHHHHHHhcCcCceEEEeC
Confidence            976544556666777888999887766 5679999999999999888888999999  9999999988877778999974

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=3.8e-41  Score=291.35  Aligned_cols=260  Identities=24%  Similarity=0.427  Sum_probs=219.1

Q ss_pred             ccccceeEEEEEeCCCCC------CCCCCCEEEEccCccCCCCccccCCCCCCCCCcccccCC------CCCCcceeEEe
Q 020928           31 VIGHECAGIIEEVGSEVK------SLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP------PTNGSLAHKVV   98 (319)
Q Consensus        31 i~G~e~~G~V~~~G~~v~------~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~e~~~   98 (319)
                      ++|||++|+|+++|++|+      +|++||||+..+..+|+.|.+|..|++++|++..+++..      ..+|+|+||+.
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~   80 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH   80 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence            589999999999999999      899999999988889999999999999999987655432      24799999999


Q ss_pred             ecCC-ceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHH
Q 020928           99 HPAK-LCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  176 (319)
Q Consensus        99 ~~~~-~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~  176 (319)
                      +++. .++++|+++++++|+.+. .+.++|+++++....++++|||+|+|++|++++|+|+.+|+++|++++++++|+++
T Consensus        81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~  160 (280)
T TIGR03366        81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRREL  160 (280)
T ss_pred             ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            9997 699999999999998775 56889999988777799999999999999999999999999768888889999999


Q ss_pred             HHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC--CcccccchHHH
Q 020928          177 ARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK--TEMTVALTPAA  254 (319)
Q Consensus       177 ~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~  254 (319)
                      ++++|++.++++..    ....+.+++  .+.++|++||++|++..++.++++++++|+++.+|...  ...+++...+.
T Consensus       161 a~~~Ga~~~i~~~~----~~~~~~~~~--~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~  234 (280)
T TIGR03366       161 ALSFGATALAEPEV----LAERQGGLQ--NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVV  234 (280)
T ss_pred             HHHcCCcEecCchh----hHHHHHHHh--CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHH
Confidence            99999988876421    223333332  35689999999998878899999999999999999642  23355666788


Q ss_pred             hcCcEEEEeecc-CCCHHHHHHHHHcC--CCCCCCceeeeecCChhh
Q 020928          255 AREVDVIGIFRY-RSTWPLCIEFLRSG--KIDVKPLITHRFGFTQKE  298 (319)
Q Consensus       255 ~~~~~i~~~~~~-~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~  298 (319)
                      .+++++.++... .++++++++++.++  ++++.++++++|++  ++
T Consensus       235 ~~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l--~~  279 (280)
T TIGR03366       235 RRWLTIRGVHNYEPRHLDQAVRFLAANGQRFPFEELVGKPFPL--AD  279 (280)
T ss_pred             hCCcEEEecCCCCHHHHHHHHHHHHhhCCCCCHHHHhhccccc--cc
Confidence            899999998876 45789999999985  56666778888888  65

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=5.5e-40  Score=293.49  Aligned_cols=310  Identities=25%  Similarity=0.341  Sum_probs=251.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|+|++|++...+....   .+.|.++|||++|+|+++|+++++|++||+|++.+..+|+.|..|..|++++|..
T Consensus        29 Ikv~a~~i~~~d~~~~~g~~~~---~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~  105 (351)
T cd08285          29 VRPTAVAPCTSDVHTVWGGAPG---ERHGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGG  105 (351)
T ss_pred             EEEEEEEechhhHHHhcCCCCC---CCCCcccCcceEEEEEEecCCcCccCCCCEEEEcCcCCCCCCHHHHCcCcccCcC
Confidence            6899999999999988764321   3568999999999999999999999999999998778999999999999999986


Q ss_pred             ccc--ccCCCCCCcceeEEeecCC--ceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHH
Q 020928           81 MRF--FGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLA  155 (319)
Q Consensus        81 ~~~--~~~~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~l  155 (319)
                      ...  .......|+|+||+.++.+  .++++|+++++++++.+ .++.+||++++.++++++++|||+|+|++|++++|+
T Consensus       106 ~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~iG~~~~~l  185 (351)
T cd08285         106 MLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVAVFGIGPVGLMAVAG  185 (351)
T ss_pred             CCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHHHHHccCCCCCCEEEEECCCHHHHHHHHH
Confidence            421  1112347999999999974  89999999999999887 478899999877899999999999999999999999


Q ss_pred             HHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCE
Q 020928          156 ARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK  235 (319)
Q Consensus       156 a~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~  235 (319)
                      |+..|+..++++++++++.++++++|++.++++..  .++...+.++.  .+.++|++||++|++..+..++++++++|+
T Consensus       186 ak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~i~~~~--~~~~~d~vld~~g~~~~~~~~~~~l~~~G~  261 (351)
T cd08285         186 ARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN--GDVVEQILKLT--GGKGVDAVIIAGGGQDTFEQALKVLKPGGT  261 (351)
T ss_pred             HHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCC--CCHHHHHHHHh--CCCCCcEEEECCCCHHHHHHHHHHhhcCCE
Confidence            99999977889999999999999999988877532  35555555543  356799999999987788999999999999


Q ss_pred             EEEecccCCcc--cccchH--HHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCC-CceeeeecCChhhHHHHHHHHhc
Q 020928          236 VCLIGLAKTEM--TVALTP--AAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVK-PLITHRFGFTQKEIEDAFEISAQ  308 (319)
Q Consensus       236 ~v~~g~~~~~~--~~~~~~--~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~a~~~~~~  308 (319)
                      ++.+|......  .++...  ...+..++.+....  .+.++++++++++|++.+. ....+++++  +++++|++.+++
T Consensus       262 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l--~~~~~a~~~~~~  339 (351)
T cd08285         262 ISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFFGF--DDIEEALMLMKD  339 (351)
T ss_pred             EEEecccCCCceeecChhhhhhhccccEEEEeecCCccccHHHHHHHHHcCCCChhhceeccccCH--HHHHHHHHHHhc
Confidence            99998644322  222111  23455566655432  5678999999999999663 234455788  999999999998


Q ss_pred             CC-CceEEEEeC
Q 020928          309 GG-NAIKVMFNL  319 (319)
Q Consensus       309 ~~-~~gkvvi~~  319 (319)
                      ++ ...|+++++
T Consensus       340 ~~~~~~k~~~~~  351 (351)
T cd08285         340 KPDDLIKPVIIF  351 (351)
T ss_pred             ccCCeEEEEEeC
Confidence            86 578999875

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=6e-40  Score=294.86  Aligned_cols=309  Identities=24%  Similarity=0.409  Sum_probs=248.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|++.+.|..    ...+|.++|||++|+|+++|+++++|++||+|++.+..+|++|.+|..|++++|+.
T Consensus        37 vkv~~~gi~~~D~~~~~g~~----~~~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~  112 (373)
T cd08299          37 IKIVATGICRSDDHVVSGKL----VTPFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLK  112 (373)
T ss_pred             EEEEEEEcCcccHHHhcCCC----CCCCCccccccceEEEEEeCCCCccCCCCCEEEECCCCCCCCChhhhCCCcccCcC
Confidence            68999999999999998753    23578999999999999999999999999999998888999999999999999987


Q ss_pred             cccccC--------------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCC
Q 020928           81 MRFFGS--------------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPET  138 (319)
Q Consensus        81 ~~~~~~--------------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~  138 (319)
                      ....+.                    ....|+|+||+.++.+.++++|+++++++++++. ++.+||+++ ..+++++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~  192 (373)
T cd08299         113 NDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGS  192 (373)
T ss_pred             cccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCC
Confidence            654210                    0035899999999999999999999999999886 788999886 558899999


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|+|+|+|++|++++++|+.+|++.|+++++++++.++++++|++.++++.....++...+.++.   ++++|++||++|
T Consensus       193 ~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~---~~~~d~vld~~g  269 (373)
T cd08299         193 TCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMT---DGGVDFSFEVIG  269 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHh---CCCCeEEEECCC
Confidence            99999999999999999999998678888999999999999999888875432233455555543   357999999999


Q ss_pred             ChHHHHHHHHh-hcCCCEEEEecccCCcccccchH-HHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeeee
Q 020928          219 FDKTMSTALNA-TRPGGKVCLIGLAKTEMTVALTP-AAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHRF  292 (319)
Q Consensus       219 ~~~~~~~~~~~-l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~  292 (319)
                      ++..+..++.. ++++|+++.+|.......+.... ...++..+.+++..    ...+.++++.+.++.+++.+.+.++|
T Consensus       270 ~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (373)
T cd08299         270 RLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPMLLLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTL  349 (373)
T ss_pred             CcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHHHHhcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeee
Confidence            76667775665 46899999999653322222222 23467777776543    24566788888888777777778889


Q ss_pred             cCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          293 GFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       293 ~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++  +++++|++.+++++. .|+++++
T Consensus       350 ~l--~e~~~a~~~~~~~~~-~k~~~~~  373 (373)
T cd08299         350 PF--EKINEGFDLLRSGKS-IRTVLTF  373 (373)
T ss_pred             cH--HHHHHHHHHHhCCCc-ceEEEeC
Confidence            98  999999999887754 5888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.2e-39  Score=291.12  Aligned_cols=311  Identities=29%  Similarity=0.539  Sum_probs=255.5

Q ss_pred             CCcceEeeccCCcccccccccc------ccccCCCcccccceeEEEEEeCCCCC--CCCCCCEEEEccCccCCCCccccC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCA------NFIVKKPMVIGHECAGIIEEVGSEVK--SLEVGDRVALEPGISCGHCSLCKA   72 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~------~~~~~~p~i~G~e~~G~V~~~G~~v~--~~~~Gd~V~~~~~~~~~~~~~~~~   72 (319)
                      ||+.++|+|++|+....|....      +...++|.++|||++|+|+++|++++  +|++||+|++.+..+|+.|.+|..
T Consensus        29 V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~  108 (350)
T cd08256          29 VKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNR  108 (350)
T ss_pred             EEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCCCcccCCCCCCCEEEECCcCCCCCChHHhC
Confidence            6899999999999988774210      00124688999999999999999999  999999999999999999999999


Q ss_pred             CCCCCCCCcccccC-CCCCCcceeEEeecCC-ceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHH
Q 020928           73 GSYNLCPEMRFFGS-PPTNGSLAHKVVHPAK-LCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGL  150 (319)
Q Consensus        73 ~~~~~~~~~~~~~~-~~~~g~~~e~~~~~~~-~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~  150 (319)
                      |...+|....+++. ....|+|+||+.++++ .++++|+++++++|+.+.++.++|++++.++++++++|+|.|+|++|+
T Consensus       109 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vG~  188 (350)
T cd08256         109 GQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILIEPLACALHAVDRANIKFDDVVVLAGAGPLGL  188 (350)
T ss_pred             cCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHH
Confidence            99999987655433 1246999999999988 678999999999998777888999998778999999999988999999


Q ss_pred             HHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhh
Q 020928          151 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT  230 (319)
Q Consensus       151 ~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l  230 (319)
                      +++++|+.+|+++++++++++++.++++++|++.++++.  ..++...+.++.  .+.++|++||++|+...+..+++++
T Consensus       189 ~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~--~~~~~~~~~~~~--~~~~vdvvld~~g~~~~~~~~~~~l  264 (350)
T cd08256         189 GMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPP--EVDVVEKIKELT--GGYGCDIYIEATGHPSAVEQGLNMI  264 (350)
T ss_pred             HHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCC--CcCHHHHHHHHh--CCCCCCEEEECCCChHHHHHHHHHh
Confidence            999999999997888899999999999999998876643  345555555543  3567999999999765788899999


Q ss_pred             cCCCEEEEecccCCcccccchHH-HhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcC
Q 020928          231 RPGGKVCLIGLAKTEMTVALTPA-AAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG  309 (319)
Q Consensus       231 ~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  309 (319)
                      +++|+++.+|.......+....+ ..+++.+.++......+.++++++++|.+++.+.+.++|++  +++++|++.++++
T Consensus       265 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~l--~~~~~a~~~~~~~  342 (350)
T cd08256         265 RKLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSHLGPYCYPIAIDLIASGRLPTDGIVTHQFPL--EDFEEAFELMARG  342 (350)
T ss_pred             hcCCEEEEEccCCCCCccChhHhhcccccEEEEeccCchhHHHHHHHHHcCCCChhHheEEEeEH--HHHHHHHHHHHhC
Confidence            99999999986443333333322 35667777776656678899999999999665456788888  9999999999999


Q ss_pred             CCceEEEE
Q 020928          310 GNAIKVMF  317 (319)
Q Consensus       310 ~~~gkvvi  317 (319)
                      ...+|+++
T Consensus       343 ~~~~kvv~  350 (350)
T cd08256         343 DDSIKVVL  350 (350)
T ss_pred             CCceEEeC
Confidence            88899875

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=7.2e-40  Score=297.79  Aligned_cols=301  Identities=22%  Similarity=0.329  Sum_probs=236.9

Q ss_pred             CCcceEeeccCCccccc-ccccccc---ccCCCcccccceeEEEEEeCCCCC-CCCCCCEEEEccCccCCCCccccCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQ-TMRCANF---IVKKPMVIGHECAGIIEEVGSEVK-SLEVGDRVALEPGISCGHCSLCKAGSY   75 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~-~~~~~~~---~~~~p~i~G~e~~G~V~~~G~~v~-~~~~Gd~V~~~~~~~~~~~~~~~~~~~   75 (319)
                      |||.++|||++|++.+. |......   ..++|.++|||++|+|+++|++|+ +|++||||++.+..+|+.|.+|. +. 
T Consensus        31 VkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~vGdrV~~~~~~~c~~~~~c~-~~-  108 (410)
T cd08238          31 VRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKKWQGKYKPGQRFVIQPALILPDGPSCP-GY-  108 (410)
T ss_pred             EEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCCCccCCCCCCCEEEEcCCcCCCCCCCCC-Cc-
Confidence            68999999999999763 4311110   124789999999999999999998 69999999998877888887762 11 


Q ss_pred             CCCCCcccccCCCCCCcceeEEeecCC----ceEeCCCCCChhhhhccchhHHH---HHHH---------HhcCCCCCCe
Q 020928           76 NLCPEMRFFGSPPTNGSLAHKVVHPAK----LCYKLPDNVSLEEGAMCEPLSVG---VHAC---------RRANVGPETN  139 (319)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~e~~~~~~~----~~~~iP~~~~~~~aa~~~~~~~a---~~~l---------~~~~~~~~~~  139 (319)
                               + ...+|+|+||+.++++    .++++|+++++++|+++.+++++   +.++         ++++++++++
T Consensus       109 ---------g-~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~  178 (410)
T cd08238         109 ---------S-YTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGN  178 (410)
T ss_pred             ---------c-ccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCE
Confidence                     1 1247999999999987    58999999999999877554433   3332         3478899999


Q ss_pred             EEEEC-CCHHHHHHHHHHHHcC--CCeEEEecCChhHHHHHHHc--------CCC-EeeccCCCCcchhHHHHHhhhhcC
Q 020928          140 VMIMG-SGPIGLVTLLAARAFG--APRIIITDVDVQRLSIARNL--------GAD-ETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       140 vlI~G-~g~vG~~ai~la~~~g--~~~vv~v~~~~~~~~~~~~~--------g~~-~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      |+|+| +|++|++++|+|+.+|  +.+|++++++++++++++++        |++ .++++.. ..++.+.+.+++  .+
T Consensus       179 VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~-~~~~~~~v~~~t--~g  255 (410)
T cd08238         179 TAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPAT-IDDLHATLMELT--GG  255 (410)
T ss_pred             EEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCc-cccHHHHHHHHh--CC
Confidence            99997 6999999999999975  45789999999999999997        655 3454321 135555555554  35


Q ss_pred             CCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc-CC--cccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCC
Q 020928          208 SGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA-KT--EMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKID  283 (319)
Q Consensus       208 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~--~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~  283 (319)
                      .++|++||++|++..+...+++++++|+++.++.. ..  ..+++...+..+++++.|+... ..+++++++++++|+++
T Consensus       256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~  335 (410)
T cd08238         256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGNTDDMKEAIDLMAAGKLN  335 (410)
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCCCCHHHHHHHHHHHHcCCCc
Confidence            68999999999877899999999999988876532 21  2345566788899999998765 45789999999999998


Q ss_pred             CCCceeeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          284 VKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +.++++++|++  +++++|++.+. ++..||+|+.+
T Consensus       336 ~~~~it~~~~l--~~~~~A~~~~~-~~~~gKvvl~~  368 (410)
T cd08238         336 PARMVTHIGGL--NAAAETTLNLP-GIPGGKKLIYT  368 (410)
T ss_pred             hhhcEEEEecH--HHHHHHHHHhh-ccCCceEEEEC
Confidence            88889999999  99999999999 77889999863

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=2.6e-39  Score=287.89  Aligned_cols=310  Identities=36%  Similarity=0.661  Sum_probs=252.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+..++....+.+...+|.++|+|++|+|+++|+++++|++||+|++.+..+|++|.+|..|..++|+.
T Consensus        26 I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~g~~~~~~~  105 (339)
T cd08232          26 VRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLN  105 (339)
T ss_pred             EEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEccCCcCCCChHHhCcCcccCcc
Confidence            68999999999998764221122223568899999999999999999999999999999888999999999999999998


Q ss_pred             cccccC----CCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHH
Q 020928           81 MRFFGS----PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAA  156 (319)
Q Consensus        81 ~~~~~~----~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la  156 (319)
                      ..+++.    ....|+|+||+.++.+.++++|+++++++|+.+.++.++|+++......++++|||.|+|.+|++++|+|
T Consensus       106 ~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~VLI~g~g~vG~~~~~la  185 (339)
T cd08232         106 MRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAALAEPLAVALHAVNRAGDLAGKRVLVTGAGPIGALVVAAA  185 (339)
T ss_pred             ccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH
Confidence            665542    1247999999999999999999999999998767888999998664434999999998999999999999


Q ss_pred             HHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEE
Q 020928          157 RAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV  236 (319)
Q Consensus       157 ~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~  236 (319)
                      +.+|+++++++++++++.++++++|++.++++...  +    +..+.. ...++|++||+.|+....+..+++|+++|++
T Consensus       186 k~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~--~----~~~~~~-~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~  258 (339)
T cd08232         186 RRAGAAEIVATDLADAPLAVARAMGADETVNLARD--P----LAAYAA-DKGDFDVVFEASGAPAALASALRVVRPGGTV  258 (339)
T ss_pred             HHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCch--h----hhhhhc-cCCCccEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            99998668888888998899999999888765321  2    222221 2346999999999765788999999999999


Q ss_pred             EEecccCCcccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEE
Q 020928          237 CLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       237 v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      +.++............+..+++++.+.....+.+++++++++++.+.+.+.+.+++++  ++++++++.+.++...||+|
T Consensus       259 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~a~~~~~~~~~~gkvv  336 (339)
T cd08232         259 VQVGMLGGPVPLPLNALVAKELDLRGSFRFDDEFAEAVRLLAAGRIDVRPLITAVFPL--EEAAEAFALAADRTRSVKVQ  336 (339)
T ss_pred             EEEecCCCCccCcHHHHhhcceEEEEEecCHHHHHHHHHHHHcCCCCchhheeEEecH--HHHHHHHHHHHhCCCceeEE
Confidence            9998543222333344566888888877666678899999999998766667788888  99999999999888899999


Q ss_pred             EeC
Q 020928          317 FNL  319 (319)
Q Consensus       317 i~~  319 (319)
                      +++
T Consensus       337 v~~  339 (339)
T cd08232         337 LSF  339 (339)
T ss_pred             EeC
Confidence            874

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=7.3e-39  Score=287.35  Aligned_cols=306  Identities=27%  Similarity=0.458  Sum_probs=250.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|++.+++..    ...+|.++|||++|+|+++|++++++++||+|++.+..+|+.|.+|..|.+.+|..
T Consensus        30 v~v~~~~i~~~d~~~~~g~~----~~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~  105 (365)
T cd05279          30 IKVVATGVCHTDLHVIDGKL----PTPLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSK  105 (365)
T ss_pred             EEEEEeeecchhHHHhcCCC----CCCCCcccccceeEEEEEeCCCcccCCCCCEEEEcCCCCCCCChhhcCCCcccCCC
Confidence            57899999999999987743    34568899999999999999999999999999998888999999999999999987


Q ss_pred             cccccCCC--------------------CCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCC
Q 020928           81 MRFFGSPP--------------------TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPET  138 (319)
Q Consensus        81 ~~~~~~~~--------------------~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~  138 (319)
                      ..+++...                    ..|+|+||+.++++.++++|+++++++|+.+. .+.+||+++ +.+++++++
T Consensus       106 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~  185 (365)
T cd05279         106 SRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGS  185 (365)
T ss_pred             cccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCC
Confidence            66542110                    24799999999999999999999999999886 788999887 458899999


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|||+|+|++|++++|+|+.+|++.++++++++++.++++++|++++++....+.++...+.++.   +.++|++||++|
T Consensus       186 ~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~---~~~~d~vid~~g  262 (365)
T cd05279         186 TCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMT---DGGVDYAFEVIG  262 (365)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHh---CCCCcEEEECCC
Confidence            99999999999999999999999778888889999999999999888765332224545555443   467999999998


Q ss_pred             ChHHHHHHHHhhc-CCCEEEEecccC--CcccccchHHHhcCcEEEEeec----cCCCHHHHHHHHHcCCCCCCCceeee
Q 020928          219 FDKTMSTALNATR-PGGKVCLIGLAK--TEMTVALTPAAAREVDVIGIFR----YRSTWPLCIEFLRSGKIDVKPLITHR  291 (319)
Q Consensus       219 ~~~~~~~~~~~l~-~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~  291 (319)
                      ....+...+++++ ++|+++.+|...  ....+....+ .++.++.+.+.    ..+.+.+++++++++.+++.+...++
T Consensus       263 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~  341 (365)
T cd05279         263 SADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHV  341 (365)
T ss_pred             CHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeee
Confidence            7668889999999 999999998643  2233444444 66777777643    25678889999999999766567788


Q ss_pred             ecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          292 FGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       292 ~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      +++  +++++|++.+++++. .|+++
T Consensus       342 ~~l--~~~~~a~~~~~~~~~-~~~~~  364 (365)
T cd05279         342 LPF--EEINDGFDLMRSGES-IRTIL  364 (365)
T ss_pred             ecH--HHHHHHHHHHhCCCc-eeeee
Confidence            888  999999999887754 46665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=6.8e-39  Score=284.36  Aligned_cols=301  Identities=22%  Similarity=0.379  Sum_probs=251.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEcc-CccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP-GISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|+|++|++.+.|....   ..+|.++|||++|+|+++|+++++|++||+|++.+ ...|+.|.+|..|+++.|.
T Consensus        30 v~v~~~~i~~~d~~~~~g~~~~---~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~  106 (333)
T cd08296          30 IKVEACGVCHSDAFVKEGAMPG---LSYPRVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCE  106 (333)
T ss_pred             EEEEEEecchHHHHHHhCCCCC---CCCCcccCcceeEEEEEECCCCccCCCCCEEEeccccCCCCCChhhhCcCcccCC
Confidence            5889999999999988774311   25688999999999999999999999999998754 3579999999999999999


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      ...+.+. ...|+++||+.++...++++|+++++++++.++ .+.++|++++..+++++++|||+|+|++|++++++|+.
T Consensus       107 ~~~~~~~-~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~~~vlV~g~g~iG~~~~~~a~~  185 (333)
T cd08296         107 NGKVTGV-TRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNSGAKPGDLVAVQGIGGLGHLAVQYAAK  185 (333)
T ss_pred             CCCccCc-ccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence            8765433 346999999999999999999999999988774 67889999877789999999999999999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      +|+ .++++++++++.++++++|+++++++..  .++...+..+     .++|++||+.|....+...+++++++|+++.
T Consensus       186 ~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~-----~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~  257 (333)
T cd08296         186 MGF-RTVAISRGSDKADLARKLGAHHYIDTSK--EDVAEALQEL-----GGAKLILATAPNAKAISALVGGLAPRGKLLI  257 (333)
T ss_pred             CCC-eEEEEeCChHHHHHHHHcCCcEEecCCC--ccHHHHHHhc-----CCCCEEEECCCchHHHHHHHHHcccCCEEEE
Confidence            999 6888888999999999999988876532  3444444332     3699999999766688999999999999999


Q ss_pred             ecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          239 IGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       239 ~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      +|......+++...++.+++++.+.... ...+..++++++++.++  +.+ .+|++  +++.+|++.+.+++.+||+|+
T Consensus       258 ~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~--~~v-~~~~~--~~~~~a~~~~~~~~~~gk~v~  332 (333)
T cd08296         258 LGAAGEPVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKFSALHGVR--PMV-ETFPL--EKANEAYDRMMSGKARFRVVL  332 (333)
T ss_pred             EecCCCCCCcCHHHHhhcccEEEEeCcCCHHHHHHHHHHHHhCCCC--ceE-EEEEH--HHHHHHHHHHHCCCCceeEEe
Confidence            9875544445555567889999988654 45678888999888874  444 57888  999999999999999999998


Q ss_pred             e
Q 020928          318 N  318 (319)
Q Consensus       318 ~  318 (319)
                      +
T Consensus       333 ~  333 (333)
T cd08296         333 T  333 (333)
T ss_pred             C
Confidence            5

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=1e-38  Score=284.09  Aligned_cols=306  Identities=27%  Similarity=0.455  Sum_probs=255.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+....|......+..+|.++|+|++|+|+++|+++.+|++||+|++.+..+|+.|..|..|..++|+.
T Consensus        30 v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  109 (340)
T cd05284          30 VRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCEN  109 (340)
T ss_pred             EEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCcCCCEEEEcCCCCCCCChHHhCcCcccCCC
Confidence            58899999999999887754332345668999999999999999999999999999999888999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh--cCCCCCCeEEEECCCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR--ANVGPETNVMIMGSGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~--~~~~~~~~vlI~G~g~vG~~ai~la~  157 (319)
                      ..+.+. +..|+|++|+.++.+.++++|+++++++++.++ .+.+||+++..  .+++++++|||+|+|.+|++++|+|+
T Consensus       110 ~~~~~~-~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~  188 (340)
T cd05284         110 ARFPGI-GTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILR  188 (340)
T ss_pred             CcccCc-cCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHH
Confidence            877765 568999999999999999999999999999885 67899999865  46889999999998889999999999


Q ss_pred             HcC-CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEE
Q 020928          158 AFG-APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV  236 (319)
Q Consensus       158 ~~g-~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~  236 (319)
                      ..| . .|+++++++++.+.++++|+++++++..  . +...+.++.  .+.++|+++|++|+.......+++|+++|++
T Consensus       189 ~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~-~~~~i~~~~--~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~  262 (340)
T cd05284         189 ALTPA-TVIAVDRSEEALKLAERLGADHVLNASD--D-VVEEVRELT--GGRGADAVIDFVGSDETLALAAKLLAKGGRY  262 (340)
T ss_pred             HhCCC-cEEEEeCCHHHHHHHHHhCCcEEEcCCc--c-HHHHHHHHh--CCCCCCEEEEcCCCHHHHHHHHHHhhcCCEE
Confidence            999 6 6777888899999999999988877532  2 555555443  2457999999999866889999999999999


Q ss_pred             EEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEE
Q 020928          237 CLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKV  315 (319)
Q Consensus       237 v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  315 (319)
                      +.+|.... ..+.......+++.+.+.... .+.+++++++++++.+.+   ..++|++  +++++|++.+++++..||+
T Consensus       263 i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~---~~~~~~~--~~~~~a~~~~~~~~~~gkv  336 (340)
T cd05284         263 VIVGYGGH-GRLPTSDLVPTEISVIGSLWGTRAELVEVVALAESGKVKV---EITKFPL--EDANEALDRLREGRVTGRA  336 (340)
T ss_pred             EEEcCCCC-CccCHHHhhhcceEEEEEecccHHHHHHHHHHHHhCCCCc---ceEEEeH--HHHHHHHHHHHcCCccceE
Confidence            99986543 233333445678888876543 557888999999998853   3356888  9999999999999899999


Q ss_pred             EEeC
Q 020928          316 MFNL  319 (319)
Q Consensus       316 vi~~  319 (319)
                      ++.+
T Consensus       337 v~~~  340 (340)
T cd05284         337 VLVP  340 (340)
T ss_pred             EecC
Confidence            9863

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=1.3e-38  Score=283.52  Aligned_cols=309  Identities=32%  Similarity=0.570  Sum_probs=251.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||++++++|++|++++.+.........+|.++|||++|+|+++|+++++|++||+|++.+..+|+.|++|..+.+++|+.
T Consensus        30 V~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  109 (341)
T PRK05396         30 IKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRN  109 (341)
T ss_pred             EEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCCCCCEEEECCCCCCCCChhhhCcChhhCCC
Confidence            68999999999999876532111122467899999999999999999999999999999888999999999999999987


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+.+ .+.+|+|+||+.++.+.++++|+++++++++.+.++.++++++.. ...++++|+|.|+|++|++++|+|+.+|
T Consensus       110 ~~~~~-~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~vlV~~~g~vg~~~~~la~~~G  187 (341)
T PRK05396        110 TKGVG-VNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFGNAVHTALS-FDLVGEDVLITGAGPIGIMAAAVAKHVG  187 (341)
T ss_pred             cceee-ecCCCcceeeEEechHHeEECcCCCCHHHhHhhhHHHHHHHHHHc-CCCCCCeEEEECCCHHHHHHHHHHHHcC
Confidence            54433 345799999999999999999999999998877777777766533 3468999999989999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +++|+++++++++.++++++|++.++++..  .++...+.++.  .+.++|++|||.|+...++.++++++++|+++.+|
T Consensus       188 ~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~--~~~~~~~~~~~--~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        188 ARHVVITDVNEYRLELARKMGATRAVNVAK--EDLRDVMAELG--MTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             CCEEEEEcCCHHHHHHHHHhCCcEEecCcc--ccHHHHHHHhc--CCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence            966788888999999999999998877543  34555555443  35689999999998778899999999999999998


Q ss_pred             ccCCcccccchHHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEEe
Q 020928          241 LAKTEMTVALTPAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  318 (319)
                      .......+....+.++++++.++...  .+.+..+++++.++ +.+.+.+.+++++  +++++|++.+.++. .||++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l--~~~~~a~~~~~~~~-~gk~vv~  339 (341)
T PRK05396        264 IPPGDMAIDWNKVIFKGLTIKGIYGREMFETWYKMSALLQSG-LDLSPIITHRFPI--DDFQKGFEAMRSGQ-SGKVILD  339 (341)
T ss_pred             cCCCCCcccHHHHhhcceEEEEEEccCccchHHHHHHHHHcC-CChhHheEEEEeH--HHHHHHHHHHhcCC-CceEEEe
Confidence            65444444456677888888876532  34566788899888 4345556788888  99999999998876 7999986


Q ss_pred             C
Q 020928          319 L  319 (319)
Q Consensus       319 ~  319 (319)
                      +
T Consensus       340 ~  340 (341)
T PRK05396        340 W  340 (341)
T ss_pred             c
Confidence            4

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=2.4e-38  Score=285.92  Aligned_cols=310  Identities=31%  Similarity=0.495  Sum_probs=251.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++++|++|+....|....   .++|.++|||++|+|+++|+++++|++||+|++.+..+|++|.+|..+.+.+|+.
T Consensus        30 i~v~~~~i~~~d~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~  106 (386)
T cd08283          30 VRVTATAICGSDLHLYHGYIPG---MKKGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDN  106 (386)
T ss_pred             EEEEEEecchhhhhhhcCCCCC---CCCCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCCChhhcCCCcccCCC
Confidence            6899999999999999875422   2468999999999999999999999999999998888899999999999999986


Q ss_pred             cccc---------------cC----CCCCCcceeEEeecCC--ceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCC
Q 020928           81 MRFF---------------GS----PPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPET  138 (319)
Q Consensus        81 ~~~~---------------~~----~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~  138 (319)
                      ....               +.    ....|+|+||+.++.+  .++++|+++++++|+.++ .+.+||++++.+++++++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~  186 (386)
T cd08283         107 TNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAAELAEVKPGD  186 (386)
T ss_pred             cccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHHhhccCCCCC
Confidence            4321               10    1236999999999988  899999999999999875 788999999778899999


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|||+|+|++|++++++|+..|+.+++++++++++.+++++++...++++... .++...+..+.  .+.++|++||++|
T Consensus       187 ~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~-~~~~~~l~~~~--~~~~~D~vld~vg  263 (386)
T cd08283         187 TVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEV-DDVVEALRELT--GGRGPDVCIDAVG  263 (386)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcc-hHHHHHHHHHc--CCCCCCEEEECCC
Confidence            99999999999999999999998668999999999999999854455554321 13555555443  3457999999997


Q ss_pred             Ch---------------------HHHHHHHHhhcCCCEEEEecccCCc-ccccchHHHhcCcEEEEeecc-CCCHHHHHH
Q 020928          219 FD---------------------KTMSTALNATRPGGKVCLIGLAKTE-MTVALTPAAAREVDVIGIFRY-RSTWPLCIE  275 (319)
Q Consensus       219 ~~---------------------~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~  275 (319)
                      +.                     ..+..++++++++|+++.+|..... ..+.......+++.+.+.... .+.++++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  343 (386)
T cd08283         264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTHVQRYLPRLLE  343 (386)
T ss_pred             CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCcCccCHHHHHhCCcEEEeccCCchHHHHHHHH
Confidence            53                     3678899999999999999864432 223333456778888876544 556888999


Q ss_pred             HHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC-CceEEEEe
Q 020928          276 FLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG-NAIKVMFN  318 (319)
Q Consensus       276 ~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~  318 (319)
                      +++++++...++..+.+++  +++++|++.+.++. ..+|++++
T Consensus       344 ~l~~g~l~~~~~~~~~~~l--~~~~~a~~~~~~~~~~~~k~~~~  385 (386)
T cd08283         344 LIESGELDPSFIITHRLPL--EDAPEAYKIFDKKEDGCIKVVLK  385 (386)
T ss_pred             HHHcCCCChhHceEEEecH--HHHHHHHHHHHhCCCCeEEEEec
Confidence            9999999765556677888  99999999998875 56899986

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=1.9e-38  Score=287.59  Aligned_cols=309  Identities=21%  Similarity=0.236  Sum_probs=251.2

Q ss_pred             CCcceEeeccCCcccccccccccc------c-cCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANF------I-VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAG   73 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~------~-~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~   73 (319)
                      |||.++|+|++|++...+.....+      . ...+.++|||++|+|+++|++++.|++||+|++.+..+|+.|..|..|
T Consensus        47 I~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~  126 (393)
T cd08246          47 VAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGG  126 (393)
T ss_pred             EEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccc
Confidence            588999999999988766421111      0 112358999999999999999999999999999988899999999999


Q ss_pred             CCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHh---cCCCCCCeEEEECC-CHH
Q 020928           74 SYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRR---ANVGPETNVMIMGS-GPI  148 (319)
Q Consensus        74 ~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~---~~~~~~~~vlI~G~-g~v  148 (319)
                      .+++|+...+++.....|+|+||+.++...++++|+++++++++.+ .++.+||+++..   ++++++++|+|+|+ |++
T Consensus       127 ~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~i  206 (393)
T cd08246         127 DPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGL  206 (393)
T ss_pred             ccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHH
Confidence            9999998777776667899999999999999999999999998876 478899999843   68999999999985 999


Q ss_pred             HHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCC--------------------cchhHHHHHhhhhcCC
Q 020928          149 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI--------------------EDVDTDVGKIQNAMGS  208 (319)
Q Consensus       149 G~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~--------------------~~~~~~i~~~~~~~~~  208 (319)
                      |++++++|+.+|+ .++++++++++.++++++|++.++++...+                    ..+...+.++.  .+.
T Consensus       207 G~a~~~lak~~G~-~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~--~~~  283 (393)
T cd08246         207 GSMAIQLARAAGA-NPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDIL--GGR  283 (393)
T ss_pred             HHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHh--CCC
Confidence            9999999999999 566778899999999999999888753211                    01333344333  344


Q ss_pred             -CccEEEEccCChHHHHHHHHhhcCCCEEEEecccCC-cccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 020928          209 -GIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVK  285 (319)
Q Consensus       209 -~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~  285 (319)
                       ++|++||++|+. .+...+++++++|+++.+|.... ...+....+..++.++.+.+.. .+.+.+++++++++.+.  
T Consensus       284 ~g~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~--  360 (393)
T cd08246         284 EDPDIVFEHPGRA-TFPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFANDREAAEANRLVMKGRID--  360 (393)
T ss_pred             CCCeEEEECCchH-hHHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecccCcHHHHHHHHHHHHcCCce--
Confidence             799999999974 78889999999999999985432 2234455566778888887654 34688899999999884  


Q ss_pred             CceeeeecCChhhHHHHHHHHhcC-CCceEEEE
Q 020928          286 PLITHRFGFTQKEIEDAFEISAQG-GNAIKVMF  317 (319)
Q Consensus       286 ~~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi  317 (319)
                      +...++|++  +++++|++.+.++ ...||+++
T Consensus       361 ~~~~~~~~l--~~~~~a~~~~~~~~~~~gkvvv  391 (393)
T cd08246         361 PCLSKVFSL--DETPDAHQLMHRNQHHVGNMAV  391 (393)
T ss_pred             eeeeEEEeH--HHHHHHHHHHHhCccccceEEE
Confidence            446788888  9999999999988 78899986

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.7e-38  Score=285.45  Aligned_cols=311  Identities=27%  Similarity=0.480  Sum_probs=250.7

Q ss_pred             CCcceEeeccCCcccccccccc----ccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCA----NFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYN   76 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~----~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~   76 (319)
                      |||.++|+|++|++.+.+...+    ....++|.++|||++|+|+++|+++.+|++||+|++.+..+|+.|+.|..|.+.
T Consensus        56 V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~  135 (384)
T cd08265          56 IRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPN  135 (384)
T ss_pred             EEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChhhhCcCcc
Confidence            6899999999999887642111    112356899999999999999999999999999999988999999999999999


Q ss_pred             CCCCcccccCCCCCCcceeEEeecCCceEeCCCC-------CChhhhhccchhHHHHHHHH-h-cCCCCCCeEEEECCCH
Q 020928           77 LCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDN-------VSLEEGAMCEPLSVGVHACR-R-ANVGPETNVMIMGSGP  147 (319)
Q Consensus        77 ~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~-------~~~~~aa~~~~~~~a~~~l~-~-~~~~~~~~vlI~G~g~  147 (319)
                      +|+.+...+. ...|+|++|+.+++..++++|++       ++++.|+...++++||+++. . ++++++++|+|+|+|+
T Consensus       136 ~~~~~~~~g~-~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~  214 (384)
T cd08265         136 HCKNLKELGF-SADGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGP  214 (384)
T ss_pred             cCCCcceeee-cCCCcceeeEEechHHeEECCccccccccCCCHHHhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCH
Confidence            9987665543 24799999999999999999986       45665666678899999983 4 6899999999999999


Q ss_pred             HHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCC-CcchhHHHHHhhhhcCCCccEEEEccCCh-HHHHH
Q 020928          148 IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD-IEDVDTDVGKIQNAMGSGIDVSFDCVGFD-KTMST  225 (319)
Q Consensus       148 vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~i~~~~~~~~~~~d~v~d~~g~~-~~~~~  225 (319)
                      +|++++|+|+..|++.|+++++++++.++++++|++.++++... ..++...+.++.  .+.++|+|+|+.|++ .....
T Consensus       215 vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~--~g~gvDvvld~~g~~~~~~~~  292 (384)
T cd08265         215 IGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVT--KGWGADIQVEAAGAPPATIPQ  292 (384)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhc--CCCCCCEEEECCCCcHHHHHH
Confidence            99999999999998778888888889999999999888765432 224555555554  356899999999963 46788


Q ss_pred             HHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHH
Q 020928          226 ALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAF  303 (319)
Q Consensus       226 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~  303 (319)
                      .+++|+++|+++.+|.......+....+..+..++.+....  ...+.+++++++++.+.+.....++|++  +++++|+
T Consensus       293 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~g~l~~~~~~~~~~~~--~~~~~a~  370 (384)
T cd08265         293 MEKSIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPL--EGIMEAI  370 (384)
T ss_pred             HHHHHHcCCEEEEECCCCCCCcccHHHHhhCceEEEEeeccCCcchHHHHHHHHHcCCCChHHheEEEeeH--HHHHHHH
Confidence            99999999999999864333333445566677788777543  4568999999999999654456678888  9999999


Q ss_pred             HHHhcCCCceEEEE
Q 020928          304 EISAQGGNAIKVMF  317 (319)
Q Consensus       304 ~~~~~~~~~gkvvi  317 (319)
                      +.+.+. ..+|+++
T Consensus       371 ~~~~~~-~~~kvvv  383 (384)
T cd08265         371 KAASER-TDGKITI  383 (384)
T ss_pred             HHHhcC-CCceEEe
Confidence            997665 6788885

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.2e-38  Score=279.72  Aligned_cols=302  Identities=27%  Similarity=0.476  Sum_probs=242.7

Q ss_pred             CCcceEeeccCCccccccccc--------cccccCCCcccccceeEEEEEeCCCCCC-CCCCCEEEEccCccCCCCcccc
Q 020928            1 MPKAVTAYCMQNVVYDQTMRC--------ANFIVKKPMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGISCGHCSLCK   71 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~--------~~~~~~~p~i~G~e~~G~V~~~G~~v~~-~~~Gd~V~~~~~~~~~~~~~~~   71 (319)
                      |||.++++|+.|+....|...        ......+|.++|+|++|+|+++|+++++ |++||+|++.+..+|+.|+.|.
T Consensus        28 V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~  107 (341)
T cd08262          28 VKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCG  107 (341)
T ss_pred             EEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEeCCCCcCCCCCCCEEEecCCcCCCCChhhh
Confidence            689999999999999887321        0112346889999999999999999997 9999999999999999999995


Q ss_pred             CCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHH
Q 020928           72 AGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLV  151 (319)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~  151 (319)
                      .|..           ....|+|+||+.++.+.++++|+++++++++...++.+||+++..++++++++|||+|+|++|.+
T Consensus       108 ~~~~-----------~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~~~~~~~~a~~~~~~~~~~~g~~VlI~g~g~vg~~  176 (341)
T cd08262         108 IGLS-----------PEAPGGYAEYMLLSEALLLRVPDGLSMEDAALTEPLAVGLHAVRRARLTPGEVALVIGCGPIGLA  176 (341)
T ss_pred             CCCC-----------cCCCCceeeeEEechHHeEECCCCCCHHHhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHH
Confidence            4321           12469999999999999999999999998886568889999887799999999999999999999


Q ss_pred             HHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCc--chhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHh
Q 020928          152 TLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE--DVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA  229 (319)
Q Consensus       152 ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~--~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~  229 (319)
                      ++|+|+.+|++.++++++++++.++++++|++.++++.....  .+. .+...  ..+.++|++||++|+.......+++
T Consensus       177 ~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~-~~~~~--~~~~~~d~vid~~g~~~~~~~~~~~  253 (341)
T cd08262         177 VIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWA-AELAR--AGGPKPAVIFECVGAPGLIQQIIEG  253 (341)
T ss_pred             HHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHH-HHHHH--hCCCCCCEEEECCCCHHHHHHHHHH
Confidence            999999999977888888999999999999988877543211  111 12222  2356799999999985577889999


Q ss_pred             hcCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhc
Q 020928          230 TRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ  308 (319)
Q Consensus       230 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~  308 (319)
                      ++++|+++.+|.......+.......+++++.++... .+.+.++++++++|.+.+.+.+.+++++  ++++++++.+++
T Consensus       254 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l--~~~~~a~~~~~~  331 (341)
T cd08262         254 APPGGRIVVVGVCMESDNIEPALAIRKELTLQFSLGYTPEEFADALDALAEGKVDVAPMVTGTVGL--DGVPDAFEALRD  331 (341)
T ss_pred             hccCCEEEEECCCCCCCccCHHHHhhcceEEEEEecccHHHHHHHHHHHHcCCCChHHheEEEeeH--HHHHHHHHHHhc
Confidence            9999999999865332222222334577777765544 4468889999999999766666788888  999999999999


Q ss_pred             CCCceEEEEe
Q 020928          309 GGNAIKVMFN  318 (319)
Q Consensus       309 ~~~~gkvvi~  318 (319)
                      +...+|+|++
T Consensus       332 ~~~~~kvvv~  341 (341)
T cd08262         332 PEHHCKILVD  341 (341)
T ss_pred             CCCceEEEeC
Confidence            9999999974

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=4.8e-38  Score=282.05  Aligned_cols=304  Identities=28%  Similarity=0.449  Sum_probs=247.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|++...+..    +...|.++|||++|+|+++|+++.+|++||+|++.+. +|++|.+|..+++++|..
T Consensus        32 Vkv~a~gi~~~d~~~~~g~~----~~~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~  106 (365)
T cd08278          32 VRIVATGICHTDLVVRDGGL----PTPLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVLSFA-SCGECANCLSGHPAYCEN  106 (365)
T ss_pred             EEEEEeecCcccHHHhcCCC----CCCCCcccccceeEEEEEeCCCcccCCCCCEEEEccc-CCCCChHHhCCCcccccC
Confidence            68999999999999988743    2356889999999999999999999999999998764 899999999999999976


Q ss_pred             cccccC----------------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCC
Q 020928           81 MRFFGS----------------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGP  136 (319)
Q Consensus        81 ~~~~~~----------------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~  136 (319)
                      ......                      ....|+|+||+.+++..++++|+++++++++.+. .+.+|++++ +.+++++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~  186 (365)
T cd08278         107 FFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRP  186 (365)
T ss_pred             cccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCC
Confidence            432210                      1125899999999999999999999999988775 678888887 4588999


Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +++|||+|+|++|++++|+|+.+|++.++++++++++.++++++|++.++++.  ..++.+.+.++.   +.++|+++||
T Consensus       187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~--~~~~~~~v~~~~---~~~~d~vld~  261 (365)
T cd08278         187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPK--EEDLVAAIREIT---GGGVDYALDT  261 (365)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCC--CcCHHHHHHHHh---CCCCcEEEEC
Confidence            99999999999999999999999997799999999999999999998887653  335555555443   5679999999


Q ss_pred             cCChHHHHHHHHhhcCCCEEEEecccC--CcccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceee
Q 020928          217 VGFDKTMSTALNATRPGGKVCLIGLAK--TEMTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITH  290 (319)
Q Consensus       217 ~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~  290 (319)
                      +|++..+..++++++++|+++.+|...  ....+....+..+++.+.++...    .+.++++++++.++++.+.+.. .
T Consensus       262 ~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~-~  340 (365)
T cd08278         262 TGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLV-T  340 (365)
T ss_pred             CCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHhe-E
Confidence            997668899999999999999998642  22344455555778888776532    3457889999999998433333 5


Q ss_pred             eecCChhhHHHHHHHHhcCCCceEEEEe
Q 020928          291 RFGFTQKEIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       291 ~~~~~~~~~~~a~~~~~~~~~~gkvvi~  318 (319)
                      .+++  +++++|++.++++.. .|++++
T Consensus       341 ~~~l--~~~~~a~~~~~~~~~-~k~~~~  365 (365)
T cd08278         341 FYPF--EDINQAIADSESGKV-IKPVLR  365 (365)
T ss_pred             EecH--HHHHHHHHHHHCCCc-eEEEEC
Confidence            6788  999999999988754 588874

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=8.4e-38  Score=278.79  Aligned_cols=310  Identities=30%  Similarity=0.524  Sum_probs=254.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+..+.|....   .++|.++|||++|+|+++|++++++++||+|++.+...|+.|++|..+.+..|..
T Consensus        30 v~v~a~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  106 (345)
T cd08286          30 VKMLKTTICGTDLHILKGDVPT---VTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCES  106 (345)
T ss_pred             EEEEEeeecchhhHHHcCCCCC---CCCCceecccceEEEEEeccCccccCCCCEEEECCcCCCCCChHHHCcCcccCCC
Confidence            5899999999999998875422   2458899999999999999999999999999998888999999999999998887


Q ss_pred             cccccCCCCCCcceeEEeecCC--ceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEECCCHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAA  156 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G~g~vG~~ai~la  156 (319)
                      ..++.+....|+|+||+.++.+  .++++|++++.++++.+. .+.+||+++ ...++++++++||.|+|++|++++|+|
T Consensus       107 ~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a  186 (345)
T cd08286         107 GGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTA  186 (345)
T ss_pred             cccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHH
Confidence            6554333356999999999987  899999999999998774 678899875 458899999999999999999999999


Q ss_pred             HHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEE
Q 020928          157 RAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV  236 (319)
Q Consensus       157 ~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~  236 (319)
                      +.+|...++++++++++.++++++|++.++++..  .++...+.++.  .+.++|++||++|+...+..++++|+++|++
T Consensus       187 ~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~i~~~~--~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~  262 (345)
T cd08286         187 QLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK--GDAIEQVLELT--DGRGVDVVIEAVGIPATFELCQELVAPGGHI  262 (345)
T ss_pred             HHcCCCeEEEEcCCHHHHHHHHHhCCCceecccc--ccHHHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHhccCCcEE
Confidence            9999447888888999999999999988877542  34555555443  3567999999999876888999999999999


Q ss_pred             EEecccCCcccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC--CceE
Q 020928          237 CLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG--NAIK  314 (319)
Q Consensus       237 v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~gk  314 (319)
                      +.+|.......+....+..+++.+.+.....+.+.+++++++++.+.+.+...+++++  ++++++++.+++..  ...|
T Consensus       263 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--~~~~~a~~~~~~~~~~~~~k  340 (345)
T cd08286         263 ANVGVHGKPVDLHLEKLWIKNITITTGLVDTNTTPMLLKLVSSGKLDPSKLVTHRFKL--SEIEKAYDTFSAAAKHKALK  340 (345)
T ss_pred             EEecccCCCCCcCHHHHhhcCcEEEeecCchhhHHHHHHHHHcCCCChHHcEEeEeeH--HHHHHHHHHHhccCCCCeeE
Confidence            9998654434444455566788887754433568889999999998665556788888  99999999998763  4569


Q ss_pred             EEEeC
Q 020928          315 VMFNL  319 (319)
Q Consensus       315 vvi~~  319 (319)
                      ++|++
T Consensus       341 ~~~~~  345 (345)
T cd08286         341 VIIDF  345 (345)
T ss_pred             EEEeC
Confidence            99874

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=5.7e-38  Score=280.11  Aligned_cols=309  Identities=29%  Similarity=0.493  Sum_probs=250.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|++.+.|....   .++|.++|+|++|+|+++|+++++|++||+|++.+..+|+.|.+|.+|...+|+.
T Consensus        30 i~v~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  106 (347)
T cd05278          30 VRVTATSICGSDLHIYRGGVPG---AKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCEN  106 (347)
T ss_pred             EEEEEEEechhhHHHHcCCCCC---CCCCceeccceEEEEEEECCCccccCCCCEEEecCCCCCCCChhHhCcCcccCcC
Confidence            6899999999999988775422   3568999999999999999999999999999998888999999999999999987


Q ss_pred             cccc--cCCCCCCcceeEEeecCC--ceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHH
Q 020928           81 MRFF--GSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLA  155 (319)
Q Consensus        81 ~~~~--~~~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~l  155 (319)
                      ..+.  ......|+|+||+.++.+  .++++|+++++++|+.++ .+.+||+++...+++++++|||.|+|++|++++|+
T Consensus       107 ~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~~~VlI~g~g~vg~~~iql  186 (347)
T cd05278         107 GLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGAELAGIKPGSTVAVIGAGPVGLCAVAG  186 (347)
T ss_pred             CCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhheeehhhhcCCCCCCEEEEECCCHHHHHHHHH
Confidence            5532  122347999999999987  899999999999999875 78999999877889999999998889999999999


Q ss_pred             HHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCE
Q 020928          156 ARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK  235 (319)
Q Consensus       156 a~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~  235 (319)
                      |+..|...++++++++++.++++++|++.++++..  .++...+.++.  .+.++|++||++++...+...+++|+++|+
T Consensus       187 ak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~i~~~~--~~~~~d~vld~~g~~~~~~~~~~~l~~~G~  262 (347)
T cd05278         187 ARLLGAARIIAVDSNPERLDLAKEAGATDIINPKN--GDIVEQILELT--GGRGVDCVIEAVGFEETFEQAVKVVRPGGT  262 (347)
T ss_pred             HHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc--chHHHHHHHHc--CCCCCcEEEEccCCHHHHHHHHHHhhcCCE
Confidence            99999756788888888999999999888877543  34555555443  346799999999985588999999999999


Q ss_pred             EEEecccCCcccc-cchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCC-c
Q 020928          236 VCLIGLAKTEMTV-ALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGN-A  312 (319)
Q Consensus       236 ~v~~g~~~~~~~~-~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~  312 (319)
                      ++.+|........ .......+++.+.+.... .+.++++++++.++.+.+.+.....+++  ++++++++.+.+++. .
T Consensus       263 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~  340 (347)
T cd05278         263 IANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPVRARMPELLDLIEEGKIDPSKLITHRFPL--DDILKAYRLFDNKPDGC  340 (347)
T ss_pred             EEEEcCCCCCcccCccchhhhceeEEEeeccCchhHHHHHHHHHHcCCCChhHcEEEEecH--HHHHHHHHHHhcCCCCc
Confidence            9999854322111 111223456666654332 4578889999999998654445677888  999999999988766 7


Q ss_pred             eEEEEe
Q 020928          313 IKVMFN  318 (319)
Q Consensus       313 gkvvi~  318 (319)
                      +|++++
T Consensus       341 ~~~vv~  346 (347)
T cd05278         341 IKVVIR  346 (347)
T ss_pred             eEEEec
Confidence            899886

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=1.4e-37  Score=277.08  Aligned_cols=307  Identities=36%  Similarity=0.633  Sum_probs=255.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++++|+.|+.+..+...   +...|.++|+|++|+|+.+|+++++|++||+|++.+..+|+.|++|..|+.++|+.
T Consensus        29 i~v~~~~l~~~d~~~~~g~~~---~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  105 (343)
T cd08235          29 VKVRACGICGTDVKKIRGGHT---DLKPPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPN  105 (343)
T ss_pred             EEEEEeeeccccHHHHcCCCc---cCCCCcccccceEEEEEeeCCCCCCCCCCCEEEEccCCCCCCChHHHCcCcccCCC
Confidence            689999999999998876431   23457899999999999999999999999999999888999999999999999988


Q ss_pred             cccccCCCCCCcceeEEeecCCc-----eEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKL-----CYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLA  155 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~-----~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~l  155 (319)
                      ..+++. ...|+|++|+.++.+.     ++++|+++++++|+.+.++.+||+++...+++++++|+|+|+|.+|++++|+
T Consensus       106 ~~~~~~-~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~VlV~g~g~vg~~~~~l  184 (343)
T cd08235         106 YKKFGN-LYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCINAQRKAGIKPGDTVLVIGAGPIGLLHAML  184 (343)
T ss_pred             cceecc-CCCCcceeeEEecccccccccEEECCCCCCHHHHHhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHH
Confidence            665543 3579999999999998     9999999999999877778899999977789999999999989999999999


Q ss_pred             HHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCE
Q 020928          156 ARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK  235 (319)
Q Consensus       156 a~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~  235 (319)
                      |+..|++.++++++++++.+.++++|.+.++++.  ..++...+.++.  .+.++|++||++++.......+++++++|+
T Consensus       185 a~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~--~~~~~~~i~~~~--~~~~vd~vld~~~~~~~~~~~~~~l~~~g~  260 (343)
T cd08235         185 AKASGARKVIVSDLNEFRLEFAKKLGADYTIDAA--EEDLVEKVRELT--DGRGADVVIVATGSPEAQAQALELVRKGGR  260 (343)
T ss_pred             HHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCC--ccCHHHHHHHHh--CCcCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence            9999995488888889998998899988877653  345555555443  356799999999976688899999999999


Q ss_pred             EEEecccCCc--ccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCc
Q 020928          236 VCLIGLAKTE--MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNA  312 (319)
Q Consensus       236 ~v~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  312 (319)
                      ++.++.....  ..+......++++++.++... .+.++.++++++++.+.+.+.+..++++  +++.++++.+.+++ .
T Consensus       261 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~--~~~~~a~~~~~~~~-~  337 (343)
T cd08235         261 ILFFGGLPKGSTVNIDPNLIHYREITITGSYAASPEDYKEALELIASGKIDVKDLITHRFPL--EDIEEAFELAADGK-S  337 (343)
T ss_pred             EEEEeccCCCCCcccCHHHHhhCceEEEEEecCChhhHHHHHHHHHcCCCChHHheeeEeeH--HHHHHHHHHHhCCC-c
Confidence            9998853221  233345567788888776554 5568889999999998654456677888  99999999999998 8


Q ss_pred             eEEEEe
Q 020928          313 IKVMFN  318 (319)
Q Consensus       313 gkvvi~  318 (319)
                      +|+|++
T Consensus       338 ~k~vi~  343 (343)
T cd08235         338 LKIVIT  343 (343)
T ss_pred             EEEEeC
Confidence            999874

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.1e-37  Score=275.13  Aligned_cols=290  Identities=28%  Similarity=0.490  Sum_probs=243.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+....|..      ..|.++|||++|+|+++|++   +++||||...+..+|++|.+|..|.+.+|..
T Consensus        29 V~v~a~~i~~~d~~~~~g~~------~~~~~~G~e~~G~Vv~~G~~---~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~   99 (319)
T cd08242          29 VRVLLAGICNTDLEIYKGYY------PFPGVPGHEFVGIVEEGPEA---ELVGKRVVGEINIACGRCEYCRRGLYTHCPN   99 (319)
T ss_pred             EEEEEEEEccccHHHHcCCC------CCCCccCceEEEEEEEeCCC---CCCCCeEEECCCcCCCCChhhhCcCcccCCC
Confidence            68999999999999987643      36889999999999999998   7899999998888999999999999999887


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ....+....+|+|++|+.++.+.++++|+++++++++.+.++.++|..++..+++++++|||+|+|.+|++++|+|+.+|
T Consensus       100 ~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~~~~~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G  179 (319)
T cd08242         100 RTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTG  179 (319)
T ss_pred             CcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            65544323579999999999999999999999998886556667777777789999999999999999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      + .+++++.++++.++++++|++.++++...             ..+.++|++||++|+...+...+++++++|+++..+
T Consensus       180 ~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-------------~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~  245 (319)
T cd08242         180 P-DVVLVGRHSEKLALARRLGVETVLPDEAE-------------SEGGGFDVVVEATGSPSGLELALRLVRPRGTVVLKS  245 (319)
T ss_pred             C-eEEEEcCCHHHHHHHHHcCCcEEeCcccc-------------ccCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEc
Confidence            9 48888888999999999999887664211             135679999999998667889999999999999876


Q ss_pred             ccCCcccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEEe
Q 020928          241 LAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  318 (319)
                      .......+....+.+++.++.+....  .+++++++++++++++.+.+.++|++  +++++|++.+.++. .+|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~l--~~~~~a~~~~~~~~-~~k~vi~  318 (319)
T cd08242         246 TYAGPASFDLTKAVVNEITLVGSRCG--PFAPALRLLRKGLVDVDPLITAVYPL--EEALEAFERAAEPG-ALKVLLR  318 (319)
T ss_pred             ccCCCCccCHHHheecceEEEEEecc--cHHHHHHHHHcCCCChhhceEEEEeH--HHHHHHHHHHhcCC-ceEEEeC
Confidence            54433444455566788888876543  38889999999999766667888999  99999999998775 5899986

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=1.3e-37  Score=277.55  Aligned_cols=306  Identities=30%  Similarity=0.504  Sum_probs=249.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|+.|+....|..    +..+|.++|+|++|+|+++|++++++++||+|++.+..+|+.|.+|.++...+|+.
T Consensus        30 i~v~~~~i~~~d~~~~~g~~----~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  105 (344)
T cd08284          30 VKVTAAAICGSDLHIYRGHI----PSTPGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAK  105 (344)
T ss_pred             EEEEEeeccccchhhhcCCC----CCCCCcccccceEEEEEeeCCCccccCCCCEEEEcccCCCCCChHHhCcCcccCCC
Confidence            58899999999998887643    23557899999999999999999999999999998888999999999999999987


Q ss_pred             cccc---cCCCCCCcceeEEeecCC--ceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHH
Q 020928           81 MRFF---GSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLL  154 (319)
Q Consensus        81 ~~~~---~~~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~  154 (319)
                      ...+   +.....|+|++|+.++.+  .++++|+++++++|+.+ ..+.+||+++...+++++++|||+|+|++|++++|
T Consensus       106 ~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta~~~~~~~~~~~~~~vlI~g~g~vg~~~~~  185 (344)
T cd08284         106 GGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKRAQVRPGDTVAVIGCGPVGLCAVL  185 (344)
T ss_pred             CccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHHHhhhHhcCCccCCEEEEECCcHHHHHHHH
Confidence            6655   223346999999999965  99999999999999877 47899999997788999999999999999999999


Q ss_pred             HHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCC
Q 020928          155 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGG  234 (319)
Q Consensus       155 la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  234 (319)
                      +|+.+|+.+++++++++++.++++++|+.. ++.  ...++...+.++.  .+.++|++||++|+.......+++++++|
T Consensus       186 ~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~-~~~--~~~~~~~~l~~~~--~~~~~dvvid~~~~~~~~~~~~~~l~~~g  260 (344)
T cd08284         186 SAQVLGAARVFAVDPVPERLERAAALGAEP-INF--EDAEPVERVREAT--EGRGADVVLEAVGGAAALDLAFDLVRPGG  260 (344)
T ss_pred             HHHHcCCceEEEEcCCHHHHHHHHHhCCeE-Eec--CCcCHHHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHhcccCC
Confidence            999999756788888889999999999753 332  3345555555543  35689999999998768899999999999


Q ss_pred             EEEEecccCC-cccccchHHHhcCcEEEEeec-cCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCc
Q 020928          235 KVCLIGLAKT-EMTVALTPAAAREVDVIGIFR-YRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNA  312 (319)
Q Consensus       235 ~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  312 (319)
                      +++.+|.... ...........+++.+.+... ..+.++++++++.++.+.+.+.+.+++++  ++++++++.+.++.. 
T Consensus       261 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~a~~~~~~~~~-  337 (344)
T cd08284         261 VISSVGVHTAEEFPFPGLDAYNKNLTLRFGRCPVRSLFPELLPLLESGRLDLEFLIDHRMPL--EEAPEAYRLFDKRKV-  337 (344)
T ss_pred             EEEEECcCCCCCccccHHHHhhcCcEEEEecCCcchhHHHHHHHHHcCCCChHHhEeeeecH--HHHHHHHHHHhcCCc-
Confidence            9999986542 222333344567777765432 26678999999999998654456677888  999999999998877 


Q ss_pred             eEEEEe
Q 020928          313 IKVMFN  318 (319)
Q Consensus       313 gkvvi~  318 (319)
                      +|+|++
T Consensus       338 ~k~Vi~  343 (344)
T cd08284         338 LKVVLD  343 (344)
T ss_pred             eEEEec
Confidence            999985

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.2e-37  Score=279.98  Aligned_cols=308  Identities=31%  Similarity=0.507  Sum_probs=254.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCC---CCCCCEEEEccCccCCCCccccCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS---LEVGDRVALEPGISCGHCSLCKAGSYNL   77 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~---~~~Gd~V~~~~~~~~~~~~~~~~~~~~~   77 (319)
                      |||.++++|++|+.+..+..    +..+|.++|||++|+|+.+|+++.+   |++||+|++.+..+|+.|.+|..++.++
T Consensus        30 v~v~~~~l~~~d~~~~~~~~----~~~~p~~~g~e~~G~v~~vG~~~~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~  105 (367)
T cd08263          30 IRVAACGVCHSDLHVLKGEL----PFPPPFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENL  105 (367)
T ss_pred             EEEEEeeeCcchHHHhcCCC----CCCCCcccccccceEEEEeCCCCCCCCcCCCCCEEEEcCCCCCCCChHHhCcCccc
Confidence            57899999999999887643    3366889999999999999999988   9999999998888999999999999999


Q ss_pred             CCCcccccCC---------------------CCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCC
Q 020928           78 CPEMRFFGSP---------------------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANV  134 (319)
Q Consensus        78 ~~~~~~~~~~---------------------~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~  134 (319)
                      |++..++...                     ...|+|++|+.++...++++|+++++++++.++ .+.+||+++.. ..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~  185 (367)
T cd08263         106 CEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADV  185 (367)
T ss_pred             CcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccC
Confidence            9976532110                     136999999999999999999999999999875 68899999855 778


Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      +++++|||+|+|++|++++++|+..|++.++++++++++.++++++|++.++++.  ..++...+.++.  .+.++|++|
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~--~~~~~~~l~~~~--~~~~~d~vl  261 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAA--KEDAVAAIREIT--GGRGVDVVV  261 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCC--cccHHHHHHHHh--CCCCCCEEE
Confidence            9999999999999999999999999996688888889999999999998887753  335555555443  356799999


Q ss_pred             EccCChHHHHHHHHhhcCCCEEEEecccCC--cccccchHHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCceee
Q 020928          215 DCVGFDKTMSTALNATRPGGKVCLIGLAKT--EMTVALTPAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITH  290 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~  290 (319)
                      |++++......++++++++|+++.++....  ...+....+..+++.+.++...  .+.+++++++++++.+.+.+...+
T Consensus       262 d~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~  341 (367)
T cd08263         262 EALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGARPRQDLPELVGLAASGKLDPEALVTH  341 (367)
T ss_pred             EeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHcCCCCcccceeE
Confidence            999986578889999999999999985432  2233444555678888776433  356888999999999865555667


Q ss_pred             eecCChhhHHHHHHHHhcCCCceEEEEe
Q 020928          291 RFGFTQKEIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       291 ~~~~~~~~~~~a~~~~~~~~~~gkvvi~  318 (319)
                      .+++  +++.++++.++++...||+|++
T Consensus       342 ~~~~--~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         342 KYKL--EEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             EecH--HHHHHHHHHHhcCCccceeeeC
Confidence            7888  9999999999999888999974

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=2.5e-37  Score=275.71  Aligned_cols=306  Identities=28%  Similarity=0.479  Sum_probs=249.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++++|++|+....|..    +...|.++|||++|+|+++|+++.++++||+|++....+|+.|.+|..|...+|..
T Consensus        30 V~v~~~~i~~~d~~~~~g~~----~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  105 (345)
T cd08287          30 IRVVATCVCGSDLWPYRGVS----PTRAPAPIGHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVH  105 (345)
T ss_pred             EEEeeeeecccchhhhcCCC----CCCCCcccccceEEEEEEeCCCCCccCCCCEEEeccccCCCCChhhhCcCcccCCC
Confidence            58899999999999887643    23458899999999999999999999999999986667899999999999999987


Q ss_pred             cccccCCCCCCcceeEEeecCC--ceEeCCCCCChhhhhcc------chhHHHHHHHHhcCCCCCCeEEEECCCHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMC------EPLSVGVHACRRANVGPETNVMIMGSGPIGLVT  152 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~aa~~------~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~a  152 (319)
                      ..+++ ...+|+|+||+.++.+  .++++|++++++.+...      ..+.+|+++++.++++++++|+|.|+|++|+++
T Consensus       106 ~~~~~-~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vg~~~  184 (345)
T cd08287         106 GGFWG-AFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAAVSAGVRPGSTVVVVGDGAVGLCA  184 (345)
T ss_pred             CCccc-CCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHH
Confidence            66554 3567999999999975  99999999988322211      457788998877899999999999999999999


Q ss_pred             HHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcC
Q 020928          153 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRP  232 (319)
Q Consensus       153 i~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  232 (319)
                      +|+|+..|+++++++++++++.++++++|++.++++..  .++.+.+.++.  .+.++|++||++|++..+..+++++++
T Consensus       185 ~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~--~~~~~~i~~~~--~~~~~d~il~~~g~~~~~~~~~~~l~~  260 (345)
T cd08287         185 VLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERG--EEAVARVRELT--GGVGADAVLECVGTQESMEQAIAIARP  260 (345)
T ss_pred             HHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCc--ccHHHHHHHhc--CCCCCCEEEECCCCHHHHHHHHHhhcc
Confidence            99999999977888888888999999999988887543  34445555443  356799999999987788999999999


Q ss_pred             CCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCC
Q 020928          233 GGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGN  311 (319)
Q Consensus       233 ~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  311 (319)
                      +|+++.++.......+.......+++.+.+.... .+.++++++++.++.+++.+.+.+++++  +++++|++.+.+...
T Consensus       261 ~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--~~~~~a~~~~~~~~~  338 (345)
T cd08287         261 GGRVGYVGVPHGGVELDVRELFFRNVGLAGGPAPVRRYLPELLDDVLAGRINPGRVFDLTLPL--DEVAEGYRAMDERRA  338 (345)
T ss_pred             CCEEEEecccCCCCccCHHHHHhcceEEEEecCCcHHHHHHHHHHHHcCCCCHHHhEEeeecH--HHHHHHHHHHhCCCc
Confidence            9999998865433334443456788888776543 5678899999999998655556677888  999999999887654


Q ss_pred             ceEEEEe
Q 020928          312 AIKVMFN  318 (319)
Q Consensus       312 ~gkvvi~  318 (319)
                       .|++|+
T Consensus       339 -~k~~~~  344 (345)
T cd08287         339 -IKVLLR  344 (345)
T ss_pred             -eEEEeC
Confidence             499986

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=2.4e-37  Score=276.39  Aligned_cols=309  Identities=26%  Similarity=0.397  Sum_probs=253.3

Q ss_pred             CCcceEeeccCCcccccccccc---------ccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCcccc
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCA---------NFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCK   71 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~---------~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~   71 (319)
                      |||.++|+|++|++...+....         ....++|.++|+|++|+|+++|++++++++||+|++.+...|+.|..|.
T Consensus        30 V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~  109 (350)
T cd08240          30 VKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCL  109 (350)
T ss_pred             EEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEeeCCCCCCCCCCCEEEECCcCCCCCChHHH
Confidence            6899999999999988763210         0022457899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEECCCHHH
Q 020928           72 AGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGSGPIG  149 (319)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G~g~vG  149 (319)
                      ++.+++|....+.+. ...|++++|+.++.+.++++|+++++++++.+. .+.+||++++. ..++++++|+|+|+|++|
T Consensus       110 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg  188 (350)
T cd08240         110 AGDENLCAKGRALGI-FQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLG  188 (350)
T ss_pred             CcCcccCCCCCceee-eccCcceeeEEecHHHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHH
Confidence            999999987655443 257999999999999999999999999998774 77899999866 455689999999999999


Q ss_pred             HHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHh
Q 020928          150 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA  229 (319)
Q Consensus       150 ~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~  229 (319)
                      ++++|+|+..|++.|+++++++++.+.++++|++.+++.  ...++...+.+..   ++++|++||++|.......++++
T Consensus       189 ~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~---~~~~d~vid~~g~~~~~~~~~~~  263 (350)
T cd08240         189 LMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNG--SDPDAAKRIIKAA---GGGVDAVIDFVNNSATASLAFDI  263 (350)
T ss_pred             HHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecC--CCccHHHHHHHHh---CCCCcEEEECCCCHHHHHHHHHH
Confidence            999999999999778888889999999999998877653  3334444444433   23799999999976688999999


Q ss_pred             hcCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhc
Q 020928          230 TRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ  308 (319)
Q Consensus       230 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~  308 (319)
                      |+++|+++.+|..............++++.+.+.... .+++.+++++++++.+..  .....+++  ++++++++.+.+
T Consensus       264 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~i~~--~~~~~~~~--~~~~~a~~~~~~  339 (350)
T cd08240         264 LAKGGKLVLVGLFGGEATLPLPLLPLRALTIQGSYVGSLEELRELVALAKAGKLKP--IPLTERPL--SDVNDALDDLKA  339 (350)
T ss_pred             hhcCCeEEEECCCCCCCcccHHHHhhcCcEEEEcccCCHHHHHHHHHHHHcCCCcc--ceeeEEcH--HHHHHHHHHHHc
Confidence            9999999999865443333444456688888887655 457888999999999853  34567888  999999999999


Q ss_pred             CCCceEEEEeC
Q 020928          309 GGNAIKVMFNL  319 (319)
Q Consensus       309 ~~~~gkvvi~~  319 (319)
                      ++..||+++++
T Consensus       340 ~~~~gkvvv~~  350 (350)
T cd08240         340 GKVVGRAVLKP  350 (350)
T ss_pred             CCccceEEecC
Confidence            98899999863

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.9e-37  Score=275.52  Aligned_cols=300  Identities=25%  Similarity=0.380  Sum_probs=248.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEE-EccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVA-LEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~-~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++++|++|++.+.+...   ..++|.++|||++|+|+++|+++++|++||+|+ .....+|++|.+|..|.+++|+
T Consensus        29 irv~a~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  105 (337)
T cd05283          29 IKITYCGVCHSDLHTLRNEWG---PTKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCP  105 (337)
T ss_pred             EEEEEecccchHHHHhcCCcC---CCCCCcccCcceeeEEEEECCCCcccCCCCEEEEecCCCCCCCCccccCCchhcCc
Confidence            689999999999999887541   235689999999999999999999999999997 4445589999999999999998


Q ss_pred             Cccccc------CCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHH
Q 020928           80 EMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVT  152 (319)
Q Consensus        80 ~~~~~~------~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~a  152 (319)
                      +..+..      .....|+|+||+.++.+.++++|+++++++++.+. ...+||++++...++++++++|.|+|++|+++
T Consensus       106 ~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g~~vlV~g~g~vG~~~  185 (337)
T cd05283         106 KGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNGVGPGKRVGVVGIGGLGHLA  185 (337)
T ss_pred             chhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEECCcHHHHHH
Confidence            865432      12347999999999999999999999999998775 67889999887779999999999899999999


Q ss_pred             HHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcC
Q 020928          153 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRP  232 (319)
Q Consensus       153 i~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  232 (319)
                      +++|+..|+ +++++++++++.++++++|++.+++...  .++.   ..    .+.++|++||++|+......+++++++
T Consensus       186 ~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~--~~~~---~~----~~~~~d~v~~~~g~~~~~~~~~~~l~~  255 (337)
T cd05283         186 VKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKD--PEAM---KK----AAGSLDLIIDTVSASHDLDPYLSLLKP  255 (337)
T ss_pred             HHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcc--hhhh---hh----ccCCceEEEECCCCcchHHHHHHHhcC
Confidence            999999999 7888888889999999999888776422  1211   11    246799999999987458889999999


Q ss_pred             CCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCC
Q 020928          233 GGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGN  311 (319)
Q Consensus       233 ~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  311 (319)
                      +|+++.+|.......++...+..+++.+.+.... .+.++.+++++++++++  +.. +++++  +++++|++.+++++.
T Consensus       256 ~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~--~~~-~~~~~--~~~~~a~~~~~~~~~  330 (337)
T cd05283         256 GGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSLIGGRKETQEMLDFAAEHGIK--PWV-EVIPM--DGINEALERLEKGDV  330 (337)
T ss_pred             CCEEEEEeccCCCCccCHHHHhcCceEEEEecccCHHHHHHHHHHHHhCCCc--cce-EEEEH--HHHHHHHHHHHcCCC
Confidence            9999999865443344555566789999887664 45688899999999984  333 67888  999999999999999


Q ss_pred             ceEEEEe
Q 020928          312 AIKVMFN  318 (319)
Q Consensus       312 ~gkvvi~  318 (319)
                      .||+|++
T Consensus       331 ~~k~v~~  337 (337)
T cd05283         331 RYRFVLD  337 (337)
T ss_pred             cceEeeC
Confidence            9999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=5.1e-37  Score=273.14  Aligned_cols=310  Identities=34%  Similarity=0.597  Sum_probs=250.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|+.|+.++++........++|.++|+|++|+|+++|+++++|++||+|++.+...|+.|..|..+.+++|+.
T Consensus        28 V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  107 (340)
T TIGR00692        28 IKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQN  107 (340)
T ss_pred             EEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEECCcCCCCCChhhhCcChhhCcC
Confidence            58899999999999876532111123457789999999999999999999999999999888999999999999999988


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+++ .+..|+|++|+.++++.++++|+++++++|+...++.+|++++ ....+++++++|.|+|++|++++|+|+.+|
T Consensus       108 ~~~~~-~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~a~~~~-~~~~~~g~~vlI~~~g~vg~~a~~la~~~G  185 (340)
T TIGR00692       108 TKIFG-VDTDGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTV-LAGPISGKSVLVTGAGPIGLMAIAVAKASG  185 (340)
T ss_pred             cceEe-ecCCCcceeEEEeehHHcEECcCCCChHhhhhcchHHHHHHHH-HccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            65543 2357999999999999999999999998777667888888876 445789999999888999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+.|+++++++++.++++++|++.++++.  ..++.+.+.++.  .+.++|++||++|+.......+++|+++|+++.+|
T Consensus       186 ~~~v~~~~~~~~~~~~~~~~g~~~~v~~~--~~~~~~~l~~~~--~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g  261 (340)
T TIGR00692       186 AYPVIVSDPNEYRLELAKKMGATYVVNPF--KEDVVKEVADLT--DGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLG  261 (340)
T ss_pred             CcEEEEECCCHHHHHHHHHhCCcEEEccc--ccCHHHHHHHhc--CCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEc
Confidence            86577888889999999999998877653  245555555543  35679999999997768889999999999999998


Q ss_pred             ccCCcccccch-HHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          241 LAKTEMTVALT-PAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       241 ~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      .......+... .+.++++.+.+....  .+.+.+++++++++++++.+.+.+.+++  ++++++++.++++. .||+|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l--~~~~~a~~~~~~~~-~gkvvv  338 (340)
T TIGR00692       262 LPPGKVTIDFTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKF--DKFEKGFELMRSGQ-TGKVIL  338 (340)
T ss_pred             cCCCCcccchhhhhhhcceEEEEEecCCchhhHHHHHHHHHcCCCChHHheeeeeeH--HHHHHHHHHHhcCC-CceEEE
Confidence            65332233333 466777777765422  3457889999999999655556777888  99999999998886 499998


Q ss_pred             eC
Q 020928          318 NL  319 (319)
Q Consensus       318 ~~  319 (319)
                      ++
T Consensus       339 ~~  340 (340)
T TIGR00692       339 SL  340 (340)
T ss_pred             eC
Confidence            75

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=5.9e-37  Score=272.87  Aligned_cols=308  Identities=33%  Similarity=0.574  Sum_probs=248.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|+.|+.++.+..........|.++|+|++|+|+.+|+++..|++||+|++.+..+|+.|.+|..|++++|+.
T Consensus        30 V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  109 (341)
T cd05281          30 IKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQN  109 (341)
T ss_pred             EEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCCCCCEEEECCccCCCCChHHHCcCcccCcc
Confidence            68999999999998765421111123457889999999999999999999999999998888999999999999999987


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+.+. ...|+|++|+.++.+.++++|++++.++++++.++.++++++. ...+++++|+|.|+|++|++++|+|+..|
T Consensus       110 ~~~~~~-~~~g~~~~~v~v~~~~~~~lP~~~~~~~a~~~~~~~~a~~~~~-~~~~~g~~vlV~g~g~vg~~~~~la~~~G  187 (341)
T cd05281         110 TKILGV-DTDGCFAEYVVVPEENLWKNDKDIPPEIASIQEPLGNAVHTVL-AGDVSGKSVLITGCGPIGLMAIAVAKAAG  187 (341)
T ss_pred             cceEec-cCCCcceEEEEechHHcEECcCCCCHHHhhhhhHHHHHHHHHH-hcCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            655443 3579999999999999999999999877766678888888875 45688999999988999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+.++++++++++.++++++|+++++++.  ..++. .+.++.  .+.++|++||++|+......++++|+++|+++.+|
T Consensus       188 ~~~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~-~~~~~~--~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g  262 (341)
T cd05281         188 ASLVIASDPNPYRLELAKKMGADVVINPR--EEDVV-EVKSVT--DGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILG  262 (341)
T ss_pred             CcEEEEECCCHHHHHHHHHhCcceeeCcc--cccHH-HHHHHc--CCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence            86677778889999999999998877643  23444 454443  35689999999998767889999999999999998


Q ss_pred             ccCCcccccch-HHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          241 LAKTEMTVALT-PAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       241 ~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      .......+... ...++++.+.+....  .+.+.++++++.++.+.+.+.+.+.+++  ++++++++.+.++. .||+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--~~~~~a~~~~~~~~-~gk~vv  339 (341)
T cd05281         263 LPPGPVDIDLNNLVIFKGLTVQGITGRKMFETWYQVSALLKSGKVDLSPVITHKLPL--EDFEEAFELMRSGK-CGKVVL  339 (341)
T ss_pred             cCCCCcccccchhhhccceEEEEEecCCcchhHHHHHHHHHcCCCChhHheEEEecH--HHHHHHHHHHhcCC-CceEEe
Confidence            64432222222 356677777766532  4567789999999998765666677888  99999999999988 899998


Q ss_pred             e
Q 020928          318 N  318 (319)
Q Consensus       318 ~  318 (319)
                      +
T Consensus       340 ~  340 (341)
T cd05281         340 Y  340 (341)
T ss_pred             c
Confidence            5

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1e-36  Score=270.89  Aligned_cols=307  Identities=37%  Similarity=0.663  Sum_probs=250.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|+.|+.+..+....   ..+|.++|+|++|+|+++|++++.|++||+|++.+..+|+.|.-|..+..++|..
T Consensus        29 v~v~~~~l~~~d~~~~~~~~~~---~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  105 (337)
T cd08261          29 VRVKRVGICGSDLHIYHGRNPF---ASYPRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCEN  105 (337)
T ss_pred             EEEEEEeEcccChHHHcCCCCc---CCCCcccccccEEEEEEeCCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCC
Confidence            5899999999999998764321   2457899999999999999999999999999998888999999999999999853


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ....+ ....|+|++|+.++++ ++++|+++++++|++++.+.++++++...+++++++|||+|+|.+|.+++|+|+.+|
T Consensus       106 ~~~~~-~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~~~~~~a~~~~~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g  183 (337)
T cd08261         106 LQVLG-VHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALVEPLAIGAHAVRRAGVTAGDTVLVVGAGPIGLGVIQVAKARG  183 (337)
T ss_pred             CCeee-ecCCCcceeEEEechh-eEECCCCCCHHHhhhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            21111 1246999999999999 999999999999988777888888886689999999999998999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      + .++++.+++++.++++++++++++++..  .++...+.++.  .+.++|++||++|+...+..++++|+++|+++.++
T Consensus       184 ~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~--~~~~~~l~~~~--~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         184 A-RVIVVDIDDERLEFARELGADDTINVGD--EDVAARLRELT--DGEGADVVIDATGNPASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             C-eEEEECCCHHHHHHHHHhCCCEEecCcc--cCHHHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence            9 5777778899999999999999887543  34555555543  34579999999988668899999999999999988


Q ss_pred             ccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcC-CCceEEEEe
Q 020928          241 LAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG-GNAIKVMFN  318 (319)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi~  318 (319)
                      .......+....+..+++.+.+.... .+.++++++++++|.+.+.+....++++  ++++++++.+.++ ...+|+|++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~k~v~~  336 (337)
T cd08261         259 LSKGPVTFPDPEFHKKELTILGSRNATREDFPDVIDLLESGKVDPEALITHRFPF--EDVPEAFDLWEAPPGGVIKVLIE  336 (337)
T ss_pred             CCCCCCccCHHHHHhCCCEEEEeccCChhhHHHHHHHHHcCCCChhhheEEEeeH--HHHHHHHHHHhcCCCceEEEEEe
Confidence            65433333444556677777765433 4568889999999999653346677888  9999999999988 488999987


Q ss_pred             C
Q 020928          319 L  319 (319)
Q Consensus       319 ~  319 (319)
                      +
T Consensus       337 ~  337 (337)
T cd08261         337 F  337 (337)
T ss_pred             C
Confidence            5

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7.3e-37  Score=272.74  Aligned_cols=307  Identities=30%  Similarity=0.482  Sum_probs=253.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++++|++|+....|...   ...+|.++|+|++|+|+.+|+++++|++||+|++.+..+|++|.+|..|..++|++
T Consensus        30 v~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  106 (345)
T cd08260          30 VEVEACGVCRSDWHGWQGHDP---DVTLPHVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEH  106 (345)
T ss_pred             EEEEEeeccHHHHHHhcCCCC---CCCCCeeeccceeEEEEEECCCCccCCCCCEEEECCCCCCCCCccccCcCcccCCC
Confidence            578999999999998877532   13568899999999999999999999999999986667899999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCC--ceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEECCCHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAA  156 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G~g~vG~~ai~la  156 (319)
                      ....+. ...|+|++|+.++..  .++++|+++++++++.+. .+.+||+++ +.+++.++++++|+|+|++|++++|+|
T Consensus       107 ~~~~~~-~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a  185 (345)
T cd08260         107 QVQPGF-THPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIA  185 (345)
T ss_pred             Cccccc-CCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHH
Confidence            743332 247999999999975  899999999999988775 788999998 458899999999999999999999999


Q ss_pred             HHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEE
Q 020928          157 RAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV  236 (319)
Q Consensus       157 ~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~  236 (319)
                      +..|+ .++++++++++.++++++|++.++++.. ..++...+..+.  .+ ++|++||++|+.......+++++++|++
T Consensus       186 ~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~--~~-~~d~vi~~~g~~~~~~~~~~~l~~~g~~  260 (345)
T cd08260         186 SALGA-RVIAVDIDDDKLELARELGAVATVNASE-VEDVAAAVRDLT--GG-GAHVSVDALGIPETCRNSVASLRKRGRH  260 (345)
T ss_pred             HHcCC-eEEEEeCCHHHHHHHHHhCCCEEEcccc-chhHHHHHHHHh--CC-CCCEEEEcCCCHHHHHHHHHHhhcCCEE
Confidence            99999 6788888899999999999988887542 134555555443  23 7999999999766888999999999999


Q ss_pred             EEecccCCc---ccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCc
Q 020928          237 CLIGLAKTE---MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNA  312 (319)
Q Consensus       237 v~~g~~~~~---~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  312 (319)
                      +.+|.....   ..+....+..+++.+.+.... .+.+++++++++++++.+.+.+.+.+++  +++++|++.++++...
T Consensus       261 i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~--~~~~~a~~~~~~~~~~  338 (345)
T cd08260         261 VQVGLTLGEEAGVALPMDRVVARELEIVGSHGMPAHRYDAMLALIASGKLDPEPLVGRTISL--DEAPDALAAMDDYATA  338 (345)
T ss_pred             EEeCCcCCCCCccccCHHHHhhcccEEEeCCcCCHHHHHHHHHHHHcCCCChhhheeEEecH--HHHHHHHHHHHcCCCC
Confidence            999864322   233444455778888886554 5578889999999998655446677888  9999999999999999


Q ss_pred             eEEEEe
Q 020928          313 IKVMFN  318 (319)
Q Consensus       313 gkvvi~  318 (319)
                      +|+|++
T Consensus       339 ~~~v~~  344 (345)
T cd08260         339 GITVIT  344 (345)
T ss_pred             ceEEec
Confidence            999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=9.9e-37  Score=271.70  Aligned_cols=305  Identities=37%  Similarity=0.651  Sum_probs=251.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|+.|+..+.+..    ....|.++|+|++|+|+.+|+++..|++||+|++.+...|+.|.+|..|..+.|+.
T Consensus        29 v~v~~~~~n~~d~~~~~~~~----~~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  104 (343)
T cd08236          29 VKVKACGICGSDIPRYLGTG----AYHPPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSN  104 (343)
T ss_pred             EEEEEEEECccchHhhcCCC----CCCCCcccCcceEEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhHHCcChhhCCC
Confidence            68899999999999887632    23467899999999999999999999999999999888999999999999999987


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+++. ...|+|++|+.++.+.++++|+++++++|++++++.+||+++...+++++++|+|+|+|.+|++++|+|+.+|
T Consensus       105 ~~~~~~-~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~~~~~ta~~~l~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G  183 (343)
T cd08236         105 YDYIGS-RRDGAFAEYVSVPARNLIKIPDHVDYEEAAMIEPAAVALHAVRLAGITLGDTVVVIGAGTIGLLAIQWLKILG  183 (343)
T ss_pred             cceEec-ccCCcccceEEechHHeEECcCCCCHHHHHhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            655543 3679999999999999999999999999988878889999998788999999999998999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ++.++++++++++.++++++|++.++++..  .. ...+.+..  .+.++|++|||+|+......++++|+++|+++.+|
T Consensus       184 ~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~--~~-~~~~~~~~--~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         184 AKRVIAVDIDDEKLAVARELGADDTINPKE--ED-VEKVRELT--EGRGADLVIEAAGSPATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CCEEEEEcCCHHHHHHHHHcCCCEEecCcc--cc-HHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence            965888888888999999999988777543  22 44444443  35579999999987668899999999999999998


Q ss_pred             ccCCccc---ccchHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhc-CC
Q 020928          241 LAKTEMT---VALTPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ-GG  310 (319)
Q Consensus       241 ~~~~~~~---~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~  310 (319)
                      .......   .....+..++..+.++...      .+.++++.++++++.+.+.+...+.+++  ++++++++.+++ ..
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~  336 (343)
T cd08236         259 IPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPL--EDGPAAFERLADREE  336 (343)
T ss_pred             ccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHHHHHHHHHcCCCChHHheeeeecH--HHHHHHHHHHHcCCC
Confidence            5443211   1223345678888776543      3457889999999998644456677888  999999999998 67


Q ss_pred             CceEEEE
Q 020928          311 NAIKVMF  317 (319)
Q Consensus       311 ~~gkvvi  317 (319)
                      ..+|+|+
T Consensus       337 ~~~k~v~  343 (343)
T cd08236         337 FSGKVLL  343 (343)
T ss_pred             CeeEEeC
Confidence            7889875

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=7.1e-37  Score=274.44  Aligned_cols=306  Identities=31%  Similarity=0.491  Sum_probs=247.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|+.|+.++.|..    +..+|.++|+|++|+|+++|+++.+|++||+|++.+..+|++|.+|++++.++|+.
T Consensus        30 i~v~~~~i~~~d~~~~~g~~----~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  105 (363)
T cd08279          30 VRIAAAGLCHSDLHVVTGDL----PAPLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDL  105 (363)
T ss_pred             EEEEEeecCcHHHHHhcCCC----CCCCCccccccceEEEEEeCCCccccCCCCEEEECCCCCCCCChhhcCCCcccCcc
Confidence            58899999999999887643    24567899999999999999999999999999999999999999999999999976


Q ss_pred             cccc-cC------------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCe
Q 020928           81 MRFF-GS------------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETN  139 (319)
Q Consensus        81 ~~~~-~~------------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~  139 (319)
                      .... +.                  ....|+|+||+.++++.++++|+++++++++.++ .+.+||+++ +..+++++++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~  185 (363)
T cd08279         106 GAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDT  185 (363)
T ss_pred             cccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCE
Confidence            4310 00                  0236899999999999999999999999998876 678888887 4588999999


Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      |||+|+|++|++++++|+..|+++|+++++++++.++++++|+++++++.  ..++...+.++.  .+.++|++||++++
T Consensus       186 vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~--~~~~~~~l~~~~--~~~~vd~vld~~~~  261 (363)
T cd08279         186 VAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNAS--EDDAVEAVRDLT--DGRGADYAFEAVGR  261 (363)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCC--CccHHHHHHHHc--CCCCCCEEEEcCCC
Confidence            99998899999999999999996688888999999999999998877643  335555555443  25679999999997


Q ss_pred             hHHHHHHHHhhcCCCEEEEecccCC--cccccchHHHhcCcEEEEeec----cCCCHHHHHHHHHcCCCCCCCceeeeec
Q 020928          220 DKTMSTALNATRPGGKVCLIGLAKT--EMTVALTPAAAREVDVIGIFR----YRSTWPLCIEFLRSGKIDVKPLITHRFG  293 (319)
Q Consensus       220 ~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~  293 (319)
                      .......+++++++|+++.++....  ...+....+..++..+.+...    ..+.+++++++++++.+.+.+.+.++++
T Consensus       262 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~  341 (363)
T cd08279         262 AATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYS  341 (363)
T ss_pred             hHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEc
Confidence            6688999999999999999985432  223444445556666665532    2456888999999999865555667788


Q ss_pred             CChhhHHHHHHHHhcCCCceEEE
Q 020928          294 FTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       294 ~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      +  +++++|++.+.+++..+.++
T Consensus       342 ~--~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         342 L--DEINEAFADMLAGENARGVI  362 (363)
T ss_pred             H--HHHHHHHHHHhcCCceeEEe
Confidence            8  99999999999887654444

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=7.3e-37  Score=275.38  Aligned_cols=306  Identities=26%  Similarity=0.422  Sum_probs=245.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|+|++|++...|...    ...|.++|||++|+|+++|+++..|++||+|++.+..+|+.|..|+.|++.+|..
T Consensus        30 v~v~a~~i~~~D~~~~~g~~~----~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~  105 (375)
T cd08282          30 VRITTTAICGSDLHMYRGRTG----AEPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLT  105 (375)
T ss_pred             EEEEEEeeCHHHHHHHcCCCC----CCCCceeccccEEEEEEeCCCCCcCCCCCEEEEeCCCCCCCCHHHHCcCcccCCC
Confidence            689999999999999887542    3468999999999999999999999999999998888999999999999999975


Q ss_pred             ccc---------ccCCCCCCcceeEEeecCC--ceEeCCCCCChhh---hhcc-chhHHHHHHHHhcCCCCCCeEEEECC
Q 020928           81 MRF---------FGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEE---GAMC-EPLSVGVHACRRANVGPETNVMIMGS  145 (319)
Q Consensus        81 ~~~---------~~~~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~---aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~  145 (319)
                      ...         .+....+|+|+||+.++..  .++++|+++++++   ++.+ ..+.+||+++..++++++++|+|.|+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~~~~~~~~g~~vlI~g~  185 (375)
T cd08282         106 VNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGLELAGVQPGDTVAVFGA  185 (375)
T ss_pred             CCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhheeeecchHHHHHHHHHhcCCCCCCEEEEECC
Confidence            321         1122346999999999976  8999999999984   4444 47889999997789999999999999


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChH----
Q 020928          146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDK----  221 (319)
Q Consensus       146 g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~----  221 (319)
                      |++|++++|+|+.+|+..++++++++++.++++++|+. .+++  ...++...+.++.   +.++|++|||+|++.    
T Consensus       186 g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~-~v~~--~~~~~~~~i~~~~---~~~~d~v~d~~g~~~~~~~  259 (375)
T cd08282         186 GPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI-PIDF--SDGDPVEQILGLE---PGGVDRAVDCVGYEARDRG  259 (375)
T ss_pred             CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe-Eecc--CcccHHHHHHHhh---CCCCCEEEECCCCcccccc
Confidence            99999999999999986678888999999999999984 3443  2345555555443   357999999999762    


Q ss_pred             -------HHHHHHHhhcCCCEEEEecccCCc-------------ccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcC
Q 020928          222 -------TMSTALNATRPGGKVCLIGLAKTE-------------MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSG  280 (319)
Q Consensus       222 -------~~~~~~~~l~~~G~~v~~g~~~~~-------------~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g  280 (319)
                             .+..++++++++|+++.+|.....             ..+....+..++..+.+.... .+.+.++++++.++
T Consensus       260 ~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  339 (375)
T cd08282         260 GEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQAPVKKYNRQLRDLILAG  339 (375)
T ss_pred             cccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEecCCchhhHHHHHHHHHcC
Confidence                   478899999999999887753211             122334455667766665443 55688899999999


Q ss_pred             CCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          281 KIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++.+...+.+++++  ++++++++.+.++. .+|+|+++
T Consensus       340 ~l~~~~~~~~~~~l--~~~~~a~~~~~~~~-~~kvvv~~  375 (375)
T cd08282         340 RAKPSFVVSHVISL--EDAPEAYARFDKRL-ETKVVIKP  375 (375)
T ss_pred             CCChHHcEEEEeeH--HHHHHHHHHHhcCC-ceEEEeCC
Confidence            99654457788888  99999999999888 89999864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=5.8e-37  Score=278.08  Aligned_cols=311  Identities=20%  Similarity=0.211  Sum_probs=247.2

Q ss_pred             CCcceEeeccCCccccccccccc------cc-cCCC-cccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCAN------FI-VKKP-MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKA   72 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~------~~-~~~p-~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~   72 (319)
                      ||+.++|+|++|++...+.....      +. ...| .++|||++|+|+++|+++++|++||+|++....+|++|++|..
T Consensus        42 V~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~  121 (398)
T TIGR01751        42 VAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRV  121 (398)
T ss_pred             EEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhcc
Confidence            58899999999987665432110      00 1234 3899999999999999999999999999998899999999999


Q ss_pred             CCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH---hcCCCCCCeEEEECC-CH
Q 020928           73 GSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR---RANVGPETNVMIMGS-GP  147 (319)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~---~~~~~~~~~vlI~G~-g~  147 (319)
                      |+..+|+...+.+.....|+|+||+.++...++++|+++++++++.+. .+.+||+++.   .++++++++++|+|+ |+
T Consensus       122 ~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~  201 (398)
T TIGR01751       122 GDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGG  201 (398)
T ss_pred             CccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcH
Confidence            999999876555544467999999999999999999999999998775 7788999874   378899999999995 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCC--------------------cchhHHHHHhhhhcC
Q 020928          148 IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI--------------------EDVDTDVGKIQNAMG  207 (319)
Q Consensus       148 vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~--------------------~~~~~~i~~~~~~~~  207 (319)
                      +|++++|+|+.+|+ .++++++++++.++++++|++.++++...+                    ..+...+.++.  .+
T Consensus       202 vG~~ai~~ak~~G~-~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  278 (398)
T TIGR01751       202 LGSYATQLARAGGG-NPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELT--GG  278 (398)
T ss_pred             HHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHc--CC
Confidence            99999999999999 566677888899999999999988753210                    01222232222  34


Q ss_pred             CCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCc-ccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 020928          208 SGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE-MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVK  285 (319)
Q Consensus       208 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~  285 (319)
                      .++|++|||+|+. .+...+++++++|+++.+|..... ..+....+..++..+.+.... .+++++++++++++++.  
T Consensus       279 ~g~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--  355 (398)
T TIGR01751       279 EDPDIVFEHPGRA-TFPTSVFVCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFANLREAWEANRLVAKGRID--  355 (398)
T ss_pred             CCceEEEECCcHH-HHHHHHHhhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccccCcHHHHHHHHHHHHCCCcc--
Confidence            6799999999964 788899999999999999864332 344445566677777776543 33478899999999884  


Q ss_pred             CceeeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          286 PLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       286 ~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +.+.+++++  ++++++++.+.++...||+|+++
T Consensus       356 ~~~~~~~~l--~~~~~a~~~~~~~~~~gkvvv~~  387 (398)
T TIGR01751       356 PTLSKVYPL--EEIGQAHQDVHRNHHQGNVAVLV  387 (398)
T ss_pred             cceeeEEcH--HHHHHHHHHHHcCCCCceEEEEe
Confidence            446688888  99999999999999999999864

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=4e-37  Score=273.91  Aligned_cols=275  Identities=17%  Similarity=0.194  Sum_probs=220.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCccccc--ceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGH--ECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC   78 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~--e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~   78 (319)
                      |||.++|+||.|+..+.+.. .  ....|+++|+  |++|+|..+|+++++|++||+|++                    
T Consensus        48 Vkv~a~~inp~~~~~~~~~~-~--~~~~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~--------------------  104 (348)
T PLN03154         48 VKNLYLSCDPYMRGRMRDFH-D--SYLPPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISG--------------------  104 (348)
T ss_pred             EEEEEEccCHHHHHhhhccC-C--CCCCCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEe--------------------
Confidence            68999999999886543311 1  1246899998  889999999999999999999985                    


Q ss_pred             CCcccccCCCCCCcceeEEeecCCc--eE--eCCCCCChh-hhhcc-chhHHHHHHHH-hcCCCCCCeEEEECC-CHHHH
Q 020928           79 PEMRFFGSPPTNGSLAHKVVHPAKL--CY--KLPDNVSLE-EGAMC-EPLSVGVHACR-RANVGPETNVMIMGS-GPIGL  150 (319)
Q Consensus        79 ~~~~~~~~~~~~g~~~e~~~~~~~~--~~--~iP~~~~~~-~aa~~-~~~~~a~~~l~-~~~~~~~~~vlI~G~-g~vG~  150 (319)
                                 .|+|+||+.++.+.  +.  ++|++++++ +|+.+ .++.|||+++. .+++++|++|||+|+ |++|+
T Consensus       105 -----------~~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~  173 (348)
T PLN03154        105 -----------ITGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQ  173 (348)
T ss_pred             -----------cCCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHH
Confidence                       36899999998753  54  458999986 56665 47889999985 488999999999985 99999


Q ss_pred             HHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHh
Q 020928          151 VTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA  229 (319)
Q Consensus       151 ~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~  229 (319)
                      +++|+|+.+|+ +|+++++++++.++++ ++|++.++++.. ..++.+.+.++.   +.++|++||++|+. .+..++++
T Consensus       174 ~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~-~~~~~~~i~~~~---~~gvD~v~d~vG~~-~~~~~~~~  247 (348)
T PLN03154        174 LVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNYKE-EPDLDAALKRYF---PEGIDIYFDNVGGD-MLDAALLN  247 (348)
T ss_pred             HHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEECCC-cccHHHHHHHHC---CCCcEEEEECCCHH-HHHHHHHH
Confidence            99999999999 6888888999999987 799999988642 224555555443   45899999999975 88999999


Q ss_pred             hcCCCEEEEecccCCc-c-----cccchHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCCCCCceeeeecCChh
Q 020928          230 TRPGGKVCLIGLAKTE-M-----TVALTPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQK  297 (319)
Q Consensus       230 l~~~G~~v~~g~~~~~-~-----~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  297 (319)
                      ++++|+++.+|..... .     ......+..+++++.+++..      .+.++++++++++|+++  +.+..+|+|  +
T Consensus       248 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~--~~~~~~~~L--~  323 (348)
T PLN03154        248 MKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIV--YIEDMSEGL--E  323 (348)
T ss_pred             hccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCcc--CceecccCH--H
Confidence            9999999999964321 1     12344577788999887643      23577899999999994  456667888  9


Q ss_pred             hHHHHHHHHhcCCCceEEEEeC
Q 020928          298 EIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       298 ~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++++|++.+++++..||+|+++
T Consensus       324 ~~~~A~~~l~~g~~~GKvVl~~  345 (348)
T PLN03154        324 SAPAALVGLFSGKNVGKQVIRV  345 (348)
T ss_pred             HHHHHHHHHHcCCCCceEEEEe
Confidence            9999999999999999999974

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=4.8e-36  Score=266.64  Aligned_cols=305  Identities=31%  Similarity=0.549  Sum_probs=253.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|+.|+....+...  ...++|.++|+|++|+|+++|+++.+|++||+|++.+..+|+.|.+|+.++..+|..
T Consensus        31 i~v~~~~~~~~d~~~~~g~~~--~~~~~~~~~g~~~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  108 (338)
T cd08254          31 VKVKAAGVCHSDLHILDGGVP--TLTKLPLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLN  108 (338)
T ss_pred             EEEEEEeeccHhHHHHcCCCc--ccCCCCEeccccccEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCCC
Confidence            578999999999998876542  123568899999999999999999999999999998888999999999999999865


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHh-cCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      ..+.+. ...|+|++|+.++.+.++++|+++++++++.+ .++.+||+++.. .+++++++|||.|+|.+|++++++|+.
T Consensus       109 ~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~  187 (338)
T cd08254         109 QGMPGL-GIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKA  187 (338)
T ss_pred             CCcccc-ccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence            544333 45799999999999999999999999998877 588999999855 779999999999889999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ .|+++++++++.+.++++|.+.++...  .......+ ..  ..+.++|+++|++|.......++++|+++|+++.
T Consensus       188 ~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~--~~~~~~~~-~~--~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~  261 (338)
T cd08254         188 MGA-AVIAVDIKEEKLELAKELGADEVLNSL--DDSPKDKK-AA--GLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVV  261 (338)
T ss_pred             cCC-EEEEEcCCHHHHHHHHHhCCCEEEcCC--CcCHHHHH-HH--hcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            998 588888999999999999988876643  22333333 22  2456899999999877788999999999999999


Q ss_pred             ecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          239 IGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       239 ~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      ++.......+....+..++.++.+++.. .+.+..++++++++.+.+.   .+.+++  ++++++++.+.+++..+|+++
T Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~---~~~~~~--~~~~~a~~~~~~~~~~~kvv~  336 (338)
T cd08254         262 VGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPEVLDLIAKGKLDPQ---VETRPL--DEIPEVLERLHKGKVKGRVVL  336 (338)
T ss_pred             ECCCCCCCccCHHHHhhCccEEEEeccCCHHHHHHHHHHHHcCCCccc---ceeEcH--HHHHHHHHHHHcCCccceEEE
Confidence            9865444445555677788888876654 5678889999999998543   466778  999999999999999999998


Q ss_pred             eC
Q 020928          318 NL  319 (319)
Q Consensus       318 ~~  319 (319)
                      ++
T Consensus       337 ~~  338 (338)
T cd08254         337 VP  338 (338)
T ss_pred             eC
Confidence            74

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=5.9e-36  Score=265.73  Aligned_cols=303  Identities=37%  Similarity=0.633  Sum_probs=251.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++++|+.|+....|..    +..+|.++|+|++|+|+++|+++++|++||+|++.+..+|+.|.+|..++.++|+.
T Consensus        29 v~v~~~~l~~~d~~~~~g~~----~~~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  104 (334)
T cd08234          29 IKVAACGICGTDLHIYEGEF----GAAPPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCEN  104 (334)
T ss_pred             EEEEEEeEchhhhHHhcCCC----CCCCCcccccceEEEEEEeCCCCCCCCCCCEEEEcCCcCCCCCccccCcChhhCCC
Confidence            68999999999999887754    23478899999999999999999999999999998888999999999999999987


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+++. ...|+|++|+.++.+.++++|+++++.+|+.+.++.+++++++.++++++++++|+|+|.+|++++++|+..|
T Consensus       105 ~~~~~~-~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~a~~~l~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G  183 (334)
T cd08234         105 LTAVGV-TRNGGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNG  183 (334)
T ss_pred             cceecc-CCCCcceeEEEecHHHcEECcCCCCHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            765432 2579999999999999999999999999987777788998887789999999999998999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +++++++++++++.++++++|++.++++..  .++...    ....+.++|++||++|........+++|+++|+++.+|
T Consensus       184 ~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~----~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         184 ASRVTVAEPNEEKLELAKKLGATETVDPSR--EDPEAQ----KEDNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             CcEEEEECCCHHHHHHHHHhCCeEEecCCC--CCHHHH----HHhcCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEe
Confidence            965888888999999999999887776533  232222    12235689999999987668889999999999999998


Q ss_pred             ccCC--cccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          241 LAKT--EMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       241 ~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      ....  ...+....+..+++.+.+.....+.+++++++++++++.+.+...+++++  ++++++++.+.+ ...+|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~a~~~~~~-~~~~k~vi  333 (334)
T cd08234         258 VYAPDARVSISPFEIFQKELTIIGSFINPYTFPRAIALLESGKIDVKGLVSHRLPL--EEVPEALEGMRS-GGALKVVV  333 (334)
T ss_pred             cCCCCCCcccCHHHHHhCCcEEEEeccCHHHHHHHHHHHHcCCCChhhhEEEEecH--HHHHHHHHHHhc-CCceEEEe
Confidence            6432  22333333445778888776656678899999999998665556677888  999999999998 78899986

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=1.1e-36  Score=269.25  Aligned_cols=277  Identities=16%  Similarity=0.197  Sum_probs=221.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCC-CCCCCEEEEccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~-~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|+|++|++..+|....  ...+|.++|||++|+|+++|+++++ |++||+|++..                   
T Consensus        35 v~v~~~gi~~~d~~~~~g~~~~--~~~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~-------------------   93 (324)
T cd08291          35 IKVEAAPINPSDLGFLKGQYGS--TKALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLA-------------------   93 (324)
T ss_pred             EEEEEccCCHHHHHHhcCcCCC--CCCCCcCCCcceEEEEEEECCCccccCCCCCEEEecC-------------------
Confidence            5899999999999988774321  2356899999999999999999996 99999998641                   


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEE--CCCHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIM--GSGPIGLVTLLAA  156 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~--G~g~vG~~ai~la  156 (319)
                              ...|+|+||+.++++.++++|+++++++|+.++ ...+||..++..+. ++++++|+  |+|++|++++|+|
T Consensus        94 --------~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a  164 (324)
T cd08291          94 --------GSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGMLETARE-EGAKAVVHTAAASALGRMLVRLC  164 (324)
T ss_pred             --------CCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHHHhhcc-CCCcEEEEccCccHHHHHHHHHH
Confidence                    014999999999999999999999999988653 56677755555655 55566665  5799999999999


Q ss_pred             HHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEE
Q 020928          157 RAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV  236 (319)
Q Consensus       157 ~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~  236 (319)
                      +.+|+ .++++++++++.++++++|+++++++.  ..++.+.+.++.  .+.++|++||++|+. .....+++++++|++
T Consensus       165 ~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~v~~~~--~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~  238 (324)
T cd08291         165 KADGI-KVINIVRRKEQVDLLKKIGAEYVLNSS--DPDFLEDLKELI--AKLNATIFFDAVGGG-LTGQILLAMPYGSTL  238 (324)
T ss_pred             HHcCC-EEEEEeCCHHHHHHHHHcCCcEEEECC--CccHHHHHHHHh--CCCCCcEEEECCCcH-HHHHHHHhhCCCCEE
Confidence            99999 688888999999999999999988754  345666665554  356899999999987 667789999999999


Q ss_pred             EEecccCC-cc-cccchHHHhcCcEEEEeecc-------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHh
Q 020928          237 CLIGLAKT-EM-TVALTPAAAREVDVIGIFRY-------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA  307 (319)
Q Consensus       237 v~~g~~~~-~~-~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~  307 (319)
                      +.+|.... .. .++...+..+++++.++...       .+.+++++++++ +.+  ++.++++|++  +|+.+|++.++
T Consensus       239 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~i~~~~~l--~~~~~a~~~~~  313 (324)
T cd08291         239 YVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TEL--KTTFASRYPL--ALTLEAIAFYS  313 (324)
T ss_pred             EEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-Ccc--ccceeeEEcH--HHHHHHHHHHH
Confidence            99985432 22 24345566788888887643       224667788887 766  6778889999  99999999999


Q ss_pred             cCCCceEEEEe
Q 020928          308 QGGNAIKVMFN  318 (319)
Q Consensus       308 ~~~~~gkvvi~  318 (319)
                      ++...||+++.
T Consensus       314 ~~~~~Gkvv~~  324 (324)
T cd08291         314 KNMSTGKKLLI  324 (324)
T ss_pred             hCCCCCeEEeC
Confidence            99899999974

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=6e-36  Score=266.13  Aligned_cols=303  Identities=25%  Similarity=0.443  Sum_probs=244.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEcc-CccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP-GISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||+++++|++|++...|..    +...|.++|||++|+|+++|+++++|++||+|++.+ ..+|+.|.+|..+...+|.
T Consensus        30 v~v~~~~i~~~d~~~~~g~~----~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  105 (338)
T PRK09422         30 VKMEYCGVCHTDLHVANGDF----GDKTGRILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCR  105 (338)
T ss_pred             EEEEEEeechhHHHHHcCCC----CCCCCccCCcccceEEEEECCCCccCCCCCEEEEccCCCCCCCChhhcCCCcccCC
Confidence            58999999999999887643    223478999999999999999999999999999754 4479999999999999997


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      .....+. ...|+++||+.++...++++|+++++++++.++ .+.+||++++.++++++++|||+|+|++|++++++|+.
T Consensus       106 ~~~~~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g~~vlV~g~g~vG~~~~~la~~  184 (338)
T PRK09422        106 SVKNAGY-TVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVSGIKPGQWIAIYGAGGLGNLALQYAKN  184 (338)
T ss_pred             CccccCc-cccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence            6654332 357999999999999999999999999998875 67889999977899999999999999999999999998


Q ss_pred             -cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          159 -FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       159 -~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                       .|+ .++++++++++.++++++|++.++++.. ..++...+.+..   + ++|.++.+.++.+.+..++++++.+|+++
T Consensus       185 ~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~v~~~~---~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v  258 (338)
T PRK09422        185 VFNA-KVIAVDINDDKLALAKEVGADLTINSKR-VEDVAKIIQEKT---G-GAHAAVVTAVAKAAFNQAVDAVRAGGRVV  258 (338)
T ss_pred             hCCC-eEEEEeCChHHHHHHHHcCCcEEecccc-cccHHHHHHHhc---C-CCcEEEEeCCCHHHHHHHHHhccCCCEEE
Confidence             498 6888889999999999999988876532 133444444432   3 68855544455568999999999999999


Q ss_pred             EecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEE
Q 020928          238 LIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       238 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      .+|.......+.......+...+.+.... .+.++.+++++.+|.+.  +.+ ..+++  +++++|++.+.++...||++
T Consensus       259 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~v-~~~~~--~~~~~a~~~~~~~~~~gkvv  333 (338)
T PRK09422        259 AVGLPPESMDLSIPRLVLDGIEVVGSLVGTRQDLEEAFQFGAEGKVV--PKV-QLRPL--EDINDIFDEMEQGKIQGRMV  333 (338)
T ss_pred             EEeeCCCCceecHHHHhhcCcEEEEecCCCHHHHHHHHHHHHhCCCC--ccE-EEEcH--HHHHHHHHHHHcCCccceEE
Confidence            99865433344445566678888776543 45688899999999884  334 45777  99999999999999999999


Q ss_pred             EeC
Q 020928          317 FNL  319 (319)
Q Consensus       317 i~~  319 (319)
                      +++
T Consensus       334 v~~  336 (338)
T PRK09422        334 IDF  336 (338)
T ss_pred             Eec
Confidence            863

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=1.4e-36  Score=247.32  Aligned_cols=280  Identities=17%  Similarity=0.224  Sum_probs=220.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||..|+.|||+|+..++|..  +...++|.+-|.|++|+|+.+|+++++|++||+|+..                     
T Consensus        52 Vk~LAaPINPsDIN~IQGvY--pvrP~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~---------------------  108 (354)
T KOG0025|consen   52 VKMLAAPINPSDINQIQGVY--PVRPELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPL---------------------  108 (354)
T ss_pred             eeeeecCCChHHhhhhcccc--CCCCCCCcccCCcceEEEEEecCCcCccCCCCeEeec---------------------
Confidence            57789999999999999864  3345789999999999999999999999999999964                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                            ....|+|++|.+.+++.++++++.+++++||++. -.+|||..|.. -++++||+|+-.|+ +++|++.||+|+
T Consensus       109 ------~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlak  182 (354)
T KOG0025|consen  109 ------SANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAK  182 (354)
T ss_pred             ------CCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHH
Confidence                  3357999999999999999999999999999996 57899999965 89999998887885 999999999999


Q ss_pred             HcCCCeEEEecCChh---HHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCC
Q 020928          158 AFGAPRIIITDVDVQ---RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGG  234 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~---~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  234 (319)
                      ++|++.|=++...++   -.+.++.+||++|+.-.... +  ....... .....+.+.|||+|+. ....+.+.|..+|
T Consensus       183 a~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~-~--~~~~k~~-~~~~~prLalNcVGGk-sa~~iar~L~~Gg  257 (354)
T KOG0025|consen  183 ALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELR-D--RKMKKFK-GDNPRPRLALNCVGGK-SATEIARYLERGG  257 (354)
T ss_pred             HhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhc-c--hhhhhhh-ccCCCceEEEeccCch-hHHHHHHHHhcCc
Confidence            999965555543332   34455679999998532111 0  0111111 1245789999999998 7788999999999


Q ss_pred             EEEEec-ccCCcccccchHHHhcCcEEEEeecc------------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHH
Q 020928          235 KVCLIG-LAKTEMTVALTPAAAREVDVIGIFRY------------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIED  301 (319)
Q Consensus       235 ~~v~~g-~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  301 (319)
                      +++++| ++..+.++++..++|+++.+.|+|..            .+.+.++.+++++|++.....  ...++  ++.+.
T Consensus       258 tmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~--e~v~L--~~~~t  333 (354)
T KOG0025|consen  258 TMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNC--EKVPL--ADHKT  333 (354)
T ss_pred             eEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccc--eeeec--hhhhH
Confidence            999998 67888899999999999999999864            123567889999999954443  33467  77777


Q ss_pred             HHHHHh-cCCCceEEEEe
Q 020928          302 AFEISA-QGGNAIKVMFN  318 (319)
Q Consensus       302 a~~~~~-~~~~~gkvvi~  318 (319)
                      |++... .-...||.++.
T Consensus       334 ald~~L~~~~~~~Kq~i~  351 (354)
T KOG0025|consen  334 ALDAALSKFGKSGKQIIV  351 (354)
T ss_pred             HHHHHHHHhccCCceEEE
Confidence            777533 33344566554

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=7.1e-36  Score=266.38  Aligned_cols=279  Identities=18%  Similarity=0.226  Sum_probs=209.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||+.|+...+......+..++|.++|||++|+|+++|+++++|++||||++.                     
T Consensus        41 V~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~---------------------   99 (345)
T cd08293          41 VRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF---------------------   99 (345)
T ss_pred             EEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec---------------------
Confidence            68999999999864332110001223568899999999999999999999999999852                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhh-----hhccchhHHHHHHHH-hcCCCCC--CeEEEECC-CHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEE-----GAMCEPLSVGVHACR-RANVGPE--TNVMIMGS-GPIGLV  151 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~-----aa~~~~~~~a~~~l~-~~~~~~~--~~vlI~G~-g~vG~~  151 (319)
                               .++|+||+.++++.++++|+++++++     ++...++.+||+++. .++++++  ++|||+|+ |++|++
T Consensus       100 ---------~~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~  170 (345)
T cd08293         100 ---------NWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSL  170 (345)
T ss_pred             ---------CCCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHH
Confidence                     25799999999999999999864432     233457889999984 4778877  99999985 999999


Q ss_pred             HHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhh
Q 020928          152 TLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT  230 (319)
Q Consensus       152 ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l  230 (319)
                      ++|+|+.+|+.+|+++++++++.+++++ +|++.++++..  .++.+.++++.   +.++|++||++|+. ....++++|
T Consensus       171 aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~--~~~~~~i~~~~---~~gvd~vid~~g~~-~~~~~~~~l  244 (345)
T cd08293         171 AGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT--DNVAERLRELC---PEGVDVYFDNVGGE-ISDTVISQM  244 (345)
T ss_pred             HHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC--CCHHHHHHHHC---CCCceEEEECCCcH-HHHHHHHHh
Confidence            9999999998568888889999998876 99999887543  46666666553   46899999999986 678999999


Q ss_pred             cCCCEEEEecccC---Cccc--ccc----hHHH-hcCcEEEEeec--c----CCCHHHHHHHHHcCCCCCCCceeeeecC
Q 020928          231 RPGGKVCLIGLAK---TEMT--VAL----TPAA-AREVDVIGIFR--Y----RSTWPLCIEFLRSGKIDVKPLITHRFGF  294 (319)
Q Consensus       231 ~~~G~~v~~g~~~---~~~~--~~~----~~~~-~~~~~i~~~~~--~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~  294 (319)
                      +++|+++.+|...   .+..  ...    ..+. .+++....+..  .    .+.++++++++++|++++.  ....+++
T Consensus       245 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l  322 (345)
T cd08293         245 NENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVK--ETVYEGL  322 (345)
T ss_pred             ccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCccce--eEEeecH
Confidence            9999999998421   1111  111    1111 12333322211  1    2336678889999999543  3444577


Q ss_pred             ChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          295 TQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       295 ~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                        +++++|++.+.+++..||+|+++
T Consensus       323 --~~~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         323 --ENAGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             --HHHHHHHHHHhcCCCCCeEEEEC
Confidence              99999999999998899999975

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=3.9e-35  Score=261.20  Aligned_cols=306  Identities=26%  Similarity=0.441  Sum_probs=251.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEcc-CccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP-GISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++++|++|+..+.+.....  .+.|.++|+|++|+|+++|++++.|++||+|++.+ ..+|+.|.+|..++..+|+
T Consensus        31 v~v~~~~i~~~d~~~~~g~~~~~--~~~~~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  108 (341)
T cd08297          31 VKLEASGVCHTDLHAALGDWPVK--PKLPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCP  108 (341)
T ss_pred             EEEEEeecchhHHHHHcCCCCcC--CCCCccCCcccceEEEEeCCCCCCCCCCCEEEEecCCCCCCCCccccCCCcccCC
Confidence            57899999999999887643221  24577899999999999999999999999999865 4579999999999999998


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                      .....+. ...|++++|+.++.+.++++|+++++++++.+ ..+.+||+++...++++++++||+|+ +++|++++++|+
T Consensus       109 ~~~~~~~-~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~~~~~~~~~vlV~g~~~~vg~~~~~~a~  187 (341)
T cd08297         109 NQKNSGY-TVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKAGLKPGDWVVISGAGGGLGHLGVQYAK  187 (341)
T ss_pred             Ccccccc-ccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHH
Confidence            8655443 35789999999999999999999999998876 47788999987778999999999985 779999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      .+|+ .++++.+++++.+.++++|++.++++..  .++...+.++.  .+.++|++||+.++......++++++++|+++
T Consensus       188 ~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~--~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v  262 (341)
T cd08297         188 AMGL-RVIAIDVGDEKLELAKELGADAFVDFKK--SDDVEAVKELT--GGGGAHAVVVTAVSAAAYEQALDYLRPGGTLV  262 (341)
T ss_pred             HCCC-eEEEEeCCHHHHHHHHHcCCcEEEcCCC--ccHHHHHHHHh--cCCCCCEEEEcCCchHHHHHHHHHhhcCCEEE
Confidence            9999 6888888889999999999988877543  25555555443  35689999998877678899999999999999


Q ss_pred             EecccCCc-ccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEE
Q 020928          238 LIGLAKTE-MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKV  315 (319)
Q Consensus       238 ~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  315 (319)
                      .+|..... .++....+..++..+.+.... .+.+++++++++++.+.  +.+ ..|++  ++++++++.+.++...||+
T Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~-~~~~~--~~~~~a~~~~~~~~~~gkv  337 (341)
T cd08297         263 CVGLPPGGFIPLDPFDLVLRGITIVGSLVGTRQDLQEALEFAARGKVK--PHI-QVVPL--EDLNEVFEKMEEGKIAGRV  337 (341)
T ss_pred             EecCCCCCCCCCCHHHHHhcccEEEEeccCCHHHHHHHHHHHHcCCCc--cee-EEEcH--HHHHHHHHHHHcCCccceE
Confidence            99865432 234444455788888876543 46788899999999984  333 56778  9999999999999999999


Q ss_pred             EEeC
Q 020928          316 MFNL  319 (319)
Q Consensus       316 vi~~  319 (319)
                      ++++
T Consensus       338 vi~~  341 (341)
T cd08297         338 VVDF  341 (341)
T ss_pred             EEeC
Confidence            9975

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-35  Score=263.16  Aligned_cols=298  Identities=26%  Similarity=0.418  Sum_probs=244.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++++|++|+....|...   ..++|.++|||++|+|+.+|++++.+++||+|++.+..+|+.|.+|..|.+++|..
T Consensus        30 V~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~  106 (334)
T PRK13771         30 IKVNYAGLCYRDLLQLQGFYP---RMKYPVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKN  106 (334)
T ss_pred             EEEEEEeechhhHHHhcCCCC---CCCCCeeccccceEEEEEeCCCCccCCCCCEEEECCCCCCcCChhhcCCCcccCcc
Confidence            588999999999988776431   13567899999999999999999899999999998888999999999999999988


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECC-CHHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGS-GPIGLVTLLAARA  158 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~-g~vG~~ai~la~~  158 (319)
                      ...++. ...|+|++|+.++.+.++++|+++++++++.+. .+.++|+++...+++++++++|+|+ |++|++++|+|+.
T Consensus       107 ~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~~~~~~~~vlI~g~~g~~g~~~~~la~~  185 (334)
T PRK13771        107 RLGYGE-ELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQVAKA  185 (334)
T ss_pred             cccccc-ccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHH
Confidence            665543 357999999999999999999999999998775 7788999987678999999999985 9999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ +++++++++++.+.++++ ++.++++.    ++...++++     .++|++||++|+. ....++++++++|+++.
T Consensus       186 ~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~v~~~-----~~~d~~ld~~g~~-~~~~~~~~l~~~G~~v~  253 (334)
T PRK13771        186 LGA-KVIAVTSSESKAKIVSKY-ADYVIVGS----KFSEEVKKI-----GGADIVIETVGTP-TLEESLRSLNMGGKIIQ  253 (334)
T ss_pred             cCC-EEEEEeCCHHHHHHHHHH-HHHhcCch----hHHHHHHhc-----CCCcEEEEcCChH-HHHHHHHHHhcCCEEEE
Confidence            999 678888888899988888 66555432    333333332     2699999999986 78899999999999999


Q ss_pred             ecccCCcc--cccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEE
Q 020928          239 IGLAKTEM--TVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKV  315 (319)
Q Consensus       239 ~g~~~~~~--~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  315 (319)
                      +|......  .........+++++.+.... .+.++.++++++++.++  +...+.+++  +++++|++.++++...+|+
T Consensus       254 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~--~~~~~a~~~~~~~~~~~kv  329 (334)
T PRK13771        254 IGNVDPSPTYSLRLGYIILKDIEIIGHISATKRDVEEALKLVAEGKIK--PVIGAEVSL--SEIDKALEELKDKSRIGKI  329 (334)
T ss_pred             EeccCCCCCcccCHHHHHhcccEEEEecCCCHHHHHHHHHHHHcCCCc--ceEeeeEcH--HHHHHHHHHHHcCCCcceE
Confidence            98643321  23333445677888776543 45688899999999884  446677888  9999999999988888999


Q ss_pred             EEe
Q 020928          316 MFN  318 (319)
Q Consensus       316 vi~  318 (319)
                      +++
T Consensus       330 v~~  332 (334)
T PRK13771        330 LVK  332 (334)
T ss_pred             EEe
Confidence            986

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=4.4e-35  Score=259.79  Aligned_cols=299  Identities=30%  Similarity=0.523  Sum_probs=244.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++++|++|++...|...   ....|.++|+|++|+|+++|+++++|++||+|++....+|+.|.+|..+.+++|+.
T Consensus        30 v~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  106 (332)
T cd08259          30 IKVKAAGVCYRDLLFWKGFFP---RGKYPLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRN  106 (332)
T ss_pred             EEEEEEecchhhhHHhcCCCC---CCCCCeeccccceEEEEEECCCCccCCCCCEEEECCCCCCcCChhhhCCCcccCCC
Confidence            588999999999999877432   13567899999999999999999999999999999888999999999999999988


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEEC-CCHHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARA  158 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G-~g~vG~~ai~la~~  158 (319)
                      ...++ ....|+|++|+.++...++++|+++++++++.++ .+.+||++++.+++.+++++||+| +|.+|++++++++.
T Consensus       107 ~~~~~-~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~  185 (332)
T cd08259         107 RAEYG-EEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKA  185 (332)
T ss_pred             ccccc-cccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            64443 3457999999999999999999999999998775 778999998778899999999998 59999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ .++++.+++++.+.+++++.+.+++..    ++.+.+.+.     .++|++|+++|.. .....+++++++|+++.
T Consensus       186 ~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~d~v~~~~g~~-~~~~~~~~~~~~g~~v~  254 (332)
T cd08259         186 LGA-RVIAVTRSPEKLKILKELGADYVIDGS----KFSEDVKKL-----GGADVVIELVGSP-TIEESLRSLNKGGRLVL  254 (332)
T ss_pred             cCC-eEEEEeCCHHHHHHHHHcCCcEEEecH----HHHHHHHhc-----cCCCEEEECCChH-HHHHHHHHhhcCCEEEE
Confidence            999 577777888888888888887765432    133333332     2799999999976 67889999999999999


Q ss_pred             ecccCCcc-cccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEE
Q 020928          239 IGLAKTEM-TVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       239 ~g~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      ++...... .........++..+.++... .+.+++++++++++.+.  +.+.+++++  +++++|++.+.++...+|++
T Consensus       255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~--~~~~~a~~~~~~~~~~~kvv  330 (332)
T cd08259         255 IGNVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGKIK--PVIDRVVSL--EDINEALEDLKSGKVVGRIV  330 (332)
T ss_pred             EcCCCCCCcCCCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCCc--cceeEEEcH--HHHHHHHHHHHcCCcccEEE
Confidence            98543221 12333344567777766543 45678899999999884  446678888  99999999999998889998


Q ss_pred             Ee
Q 020928          317 FN  318 (319)
Q Consensus       317 i~  318 (319)
                      ++
T Consensus       331 ~~  332 (332)
T cd08259         331 LK  332 (332)
T ss_pred             eC
Confidence            75

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=1.9e-35  Score=262.85  Aligned_cols=276  Identities=17%  Similarity=0.167  Sum_probs=219.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccce--eEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHEC--AGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC   78 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~--~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~   78 (319)
                      |||+++|||+.|++.+.|....  ...+|+++|++.  .|++..+|+++++|++||+|++                    
T Consensus        42 v~v~~~~inp~d~~~~~g~~~~--~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V~~--------------------   99 (338)
T cd08295          42 VKNLYLSCDPYMRGRMKGHDDS--LYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDLVWG--------------------   99 (338)
T ss_pred             EEEEEEeeCHHHHHhhccCCcc--ccCCCcCCCCeEeccEEEEEEecCCCCCCCCCEEEe--------------------
Confidence            6899999999999998874311  125688999754  4566668888999999999985                    


Q ss_pred             CCcccccCCCCCCcceeEEeecC-CceEeCC-CCCChh-hhhcc-chhHHHHHHHH-hcCCCCCCeEEEECC-CHHHHHH
Q 020928           79 PEMRFFGSPPTNGSLAHKVVHPA-KLCYKLP-DNVSLE-EGAMC-EPLSVGVHACR-RANVGPETNVMIMGS-GPIGLVT  152 (319)
Q Consensus        79 ~~~~~~~~~~~~g~~~e~~~~~~-~~~~~iP-~~~~~~-~aa~~-~~~~~a~~~l~-~~~~~~~~~vlI~G~-g~vG~~a  152 (319)
                                 .|+|+||+++++ ..++++| ++++++ +++.+ .++.|||+++. .+++++|++|||+|+ |++|+++
T Consensus       100 -----------~g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~a  168 (338)
T cd08295         100 -----------FTGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLV  168 (338)
T ss_pred             -----------cCCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHH
Confidence                       368999999999 7999995 578876 56665 47889999985 488999999999985 9999999


Q ss_pred             HHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhc
Q 020928          153 LLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       153 i~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  231 (319)
                      +|+|+.+|+ +++++++++++.+++++ +|++.++++.. ..++.+.+.++.   +.++|++||++|+. .+..++++++
T Consensus       169 iqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~i~~~~---~~gvd~v~d~~g~~-~~~~~~~~l~  242 (338)
T cd08295         169 GQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKE-EPDLDAALKRYF---PNGIDIYFDNVGGK-MLDAVLLNMN  242 (338)
T ss_pred             HHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCC-cccHHHHHHHhC---CCCcEEEEECCCHH-HHHHHHHHhc
Confidence            999999999 68888889999999998 99999887532 235555555443   46899999999975 8899999999


Q ss_pred             CCCEEEEecccCCc-c-----cccchHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhH
Q 020928          232 PGGKVCLIGLAKTE-M-----TVALTPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEI  299 (319)
Q Consensus       232 ~~G~~v~~g~~~~~-~-----~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  299 (319)
                      ++|+++.+|..... .     ........++++++.++...      .+.++++++++.+|++++.  ....|++  +++
T Consensus       243 ~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l--~~~  318 (338)
T cd08295         243 LHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--EDIADGL--ESA  318 (338)
T ss_pred             cCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--eecccCH--HHH
Confidence            99999999853321 1     12335567788888875442      2236778999999998543  4455777  999


Q ss_pred             HHHHHHHhcCCCceEEEEeC
Q 020928          300 EDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       300 ~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++|++.+++++..||+|+++
T Consensus       319 ~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         319 PEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             HHHHHHHhcCCCCceEEEEC
Confidence            99999999998999999975

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.1e-35  Score=262.80  Aligned_cols=297  Identities=21%  Similarity=0.299  Sum_probs=233.1

Q ss_pred             CCcceEeeccCCcccccccccc-----------------ccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCcc
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCA-----------------NFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGIS   63 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~-----------------~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~   63 (319)
                      |||.++|+|++|+.++.|....                 ....++|.++|||++|+|+++|+++++|++||+|++.+..+
T Consensus        33 i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~  112 (350)
T cd08274          33 IRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIR  112 (350)
T ss_pred             EEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcccCCcceEEEEEeCCCCCCCCCCCEEEEecCcC
Confidence            5899999999999988764211                 11245789999999999999999999999999999887777


Q ss_pred             CCCCccccCCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEE
Q 020928           64 CGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMI  142 (319)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI  142 (319)
                      |+.|..|..        +.+++ ....|++++|+.++...++++|+++++++++.+. .+.+||+++...++++++++||
T Consensus       113 ~~~~~~~~~--------~~~~~-~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~~~~~~~~g~~vlI  183 (350)
T cd08274         113 DPPEDDPAD--------IDYIG-SERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENMLERAGVGAGETVLV  183 (350)
T ss_pred             CCCcccccc--------ccccC-CCCCccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHHhhcCCCCCCEEEE
Confidence            777665421        11122 1236999999999999999999999999888774 7888999987789999999999


Q ss_pred             ECC-CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChH
Q 020928          143 MGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDK  221 (319)
Q Consensus       143 ~G~-g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~  221 (319)
                      +|+ |++|++++++|+.+|++ ++++++++ +.+.++++|++.+.+.  ....+..  .  ....+.++|++||++|+. 
T Consensus       184 ~g~~g~ig~~~~~~a~~~g~~-vi~~~~~~-~~~~~~~~g~~~~~~~--~~~~~~~--~--~~~~~~~~d~vi~~~g~~-  254 (350)
T cd08274         184 TGASGGVGSALVQLAKRRGAI-VIAVAGAA-KEEAVRALGADTVILR--DAPLLAD--A--KALGGEPVDVVADVVGGP-  254 (350)
T ss_pred             EcCCcHHHHHHHHHHHhcCCE-EEEEeCch-hhHHHHhcCCeEEEeC--CCccHHH--H--HhhCCCCCcEEEecCCHH-
Confidence            985 99999999999999995 66666555 7888899998654432  2222222  1  222456899999999975 


Q ss_pred             HHHHHHHhhcCCCEEEEecccCCc-ccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhH
Q 020928          222 TMSTALNATRPGGKVCLIGLAKTE-MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEI  299 (319)
Q Consensus       222 ~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  299 (319)
                      .+...+++++++|+++.+|..... ..+....+..++..+.++... .+.+.++++++.+++++  +...+++++  +++
T Consensus       255 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~--~~~  330 (350)
T cd08274         255 LFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGTREVFRRLVRYIEEGEIR--PVVAKTFPL--SEI  330 (350)
T ss_pred             HHHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEeecCCHHHHHHHHHHHHCCCcc--cccccccCH--HHH
Confidence            889999999999999999854322 344455556788888887665 45688899999999884  445677788  999


Q ss_pred             HHHHHHHhcCCCceEEEEeC
Q 020928          300 EDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       300 ~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +++++.+.++...+|++++.
T Consensus       331 ~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         331 REAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             HHHHHHHhcCCCceEEEEeC
Confidence            99999999988899999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=6.6e-35  Score=258.49  Aligned_cols=292  Identities=23%  Similarity=0.359  Sum_probs=239.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEcc-CccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP-GISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~-~~~~~~~~~~~~~~~~~~~   79 (319)
                      ||+.++++|++|++...|....   ...|.++|||++|+|+.+|+++.+|++||+|++.+ ..+|+.|.+|..+.+++|+
T Consensus        34 irv~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  110 (329)
T cd08298          34 IKVEACGVCRTDLHIVEGDLPP---PKLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCD  110 (329)
T ss_pred             EEEEEEeccHHHHHHHhCCCCC---CCCCccccccccEEEEEECCCCCCCcCCCEEEEeccCCCCCCChhHhCcChhhCC
Confidence            5889999999999988764311   24588999999999999999999999999998754 3589999999999999999


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      ...+.+. ...|+|+||+.++...++++|+++++.+++.+ ..+.+||++++.++++++++++|+|+|++|++++++|+.
T Consensus       111 ~~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~vlV~g~g~vg~~~~~la~~  189 (329)
T cd08298         111 NARFTGY-TVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRALKLAGLKPGQRLGLYGFGASAHLALQIARY  189 (329)
T ss_pred             Ccccccc-ccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHHHhhCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence            8876654 24799999999999999999999999998877 478899999977999999999999999999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ .++++++++++.++++++|++.++++...              .+.++|+++++.+........+++++++|+++.
T Consensus       190 ~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~  254 (329)
T cd08298         190 QGA-EVFAFTRSGEHQELARELGADWAGDSDDL--------------PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVL  254 (329)
T ss_pred             CCC-eEEEEcCChHHHHHHHHhCCcEEeccCcc--------------CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEE
Confidence            998 68888888899999999998777654321              135799999987766688999999999999998


Q ss_pred             ecccCCcc-cccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEE
Q 020928          239 IGLAKTEM-TVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       239 ~g~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      +|...... .++.. ...++..+.+.... .+.+..++++++++.+.+  . .++|++  +++++|++.+++++..||++
T Consensus       255 ~g~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~l~~--~-~~~~~~--~~~~~a~~~~~~~~~~~~~v  328 (329)
T cd08298         255 AGIHMSDIPAFDYE-LLWGEKTIRSVANLTRQDGEEFLKLAAEIPIKP--E-VETYPL--EEANEALQDLKEGRIRGAAV  328 (329)
T ss_pred             EcCCCCCCCccchh-hhhCceEEEEecCCCHHHHHHHHHHHHcCCCCc--e-EEEEeH--HHHHHHHHHHHcCCCcceee
Confidence            87533211 11222 23456666666544 446788999999998853  3 477888  99999999999999999987


Q ss_pred             E
Q 020928          317 F  317 (319)
Q Consensus       317 i  317 (319)
                      +
T Consensus       329 ~  329 (329)
T cd08298         329 L  329 (329)
T ss_pred             C
Confidence            4

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.1e-34  Score=256.21  Aligned_cols=306  Identities=27%  Similarity=0.446  Sum_probs=247.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++|+|++|+....|....  ....|.++|||++|+|+.+|+++.+|++||+|++.+..+|+.|.+|..+.+++|+.
T Consensus        32 v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  109 (342)
T cd08266          32 VRVKAAALNHLDLWVRRGMPGI--KLPLPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQ  109 (342)
T ss_pred             EEEEeeecCHHHHHHhcCCCCC--CCCCCeecccceEEEEEEeCCCCCCCCCCCEEEEccccccccchhhcccccccccc
Confidence            5789999999999988774321  23568899999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                      ..+.+. ...|++++|+.++.+.++++|+++++++++.++ .+.++++++ +..+++++++++|+|+ +.+|++++++++
T Consensus       110 ~~~~g~-~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~  188 (342)
T cd08266         110 YGILGE-HVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAK  188 (342)
T ss_pred             cccccc-ccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHH
Confidence            765543 357899999999999999999999999998775 678899887 4588999999999985 799999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .++.+++++++.+.+++++.+.+++.  ...++...+....  .+.++|++++++|+. .+...+++++++|+++
T Consensus       189 ~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~d~~i~~~g~~-~~~~~~~~l~~~G~~v  262 (342)
T cd08266         189 LFGA-TVIATAGSEDKLERAKELGADYVIDY--RKEDFVREVRELT--GKRGVDVVVEHVGAA-TWEKSLKSLARGGRLV  262 (342)
T ss_pred             HcCC-EEEEEeCCHHHHHHHHHcCCCeEEec--CChHHHHHHHHHh--CCCCCcEEEECCcHH-HHHHHHHHhhcCCEEE
Confidence            9999 57788888888888888887665543  3334444444332  245799999999975 7888999999999999


Q ss_pred             EecccCCc-ccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEE
Q 020928          238 LIGLAKTE-MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKV  315 (319)
Q Consensus       238 ~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  315 (319)
                      .++..... ..+.......+++.+.+.... ...+.+++++++++.+.  +...+.|++  +++++|++.+.++...+|+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~--~~~~~a~~~~~~~~~~~kv  338 (342)
T cd08266         263 TCGATTGYEAPIDLRHVFWRQLSILGSTMGTKAELDEALRLVFRGKLK--PVIDSVFPL--EEAAEAHRRLESREQFGKI  338 (342)
T ss_pred             EEecCCCCCCCcCHHHHhhcceEEEEEecCCHHHHHHHHHHHHcCCcc--cceeeeEcH--HHHHHHHHHHHhCCCCceE
Confidence            99854322 223333345667777776544 44678899999999874  446677888  9999999999988888999


Q ss_pred             EEeC
Q 020928          316 MFNL  319 (319)
Q Consensus       316 vi~~  319 (319)
                      +++.
T Consensus       339 v~~~  342 (342)
T cd08266         339 VLTP  342 (342)
T ss_pred             EEeC
Confidence            9863

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=8.4e-35  Score=257.39  Aligned_cols=291  Identities=24%  Similarity=0.406  Sum_probs=233.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+....+..    ...+|.++|||++|+|+.+|+++++|++||+|++.+..+|+.|.+|..|++++|+.
T Consensus        31 v~v~~~~i~~~d~~~~~~~~----~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~  106 (325)
T cd08264          31 IRVKMAGVNPVDYNVINAVK----VKPMPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRN  106 (325)
T ss_pred             EEEEEEEechHHHHHHhCCC----CCCCCeecccceeEEEEEECCCCCCCCCCCEEEECCCcCCCCChhhcCCCccccCc
Confidence            57899999999998876311    12357899999999999999999999999999999888999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECC-CHHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGS-GPIGLVTLLAARA  158 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~-g~vG~~ai~la~~  158 (319)
                      ..+++. ...|+|++|+.++.+.++++|+++++++++.++ .+.+||+++..++++++++++|+|+ |++|++++++|+.
T Consensus       107 ~~~~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~  185 (325)
T cd08264         107 GGIIGV-VSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKM  185 (325)
T ss_pred             cceeec-cCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHH
Confidence            765543 357999999999999999999999999998875 6688999987789999999999985 9999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ .+++++    +.+.++++|++.+++..    +....+.++.    .++|+++|++|+. .+...+++|+++|+++.
T Consensus       186 ~G~-~v~~~~----~~~~~~~~g~~~~~~~~----~~~~~l~~~~----~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~  251 (325)
T cd08264         186 MGA-EVIAVS----RKDWLKEFGADEVVDYD----EVEEKVKEIT----KMADVVINSLGSS-FWDLSLSVLGRGGRLVT  251 (325)
T ss_pred             cCC-eEEEEe----HHHHHHHhCCCeeecch----HHHHHHHHHh----CCCCEEEECCCHH-HHHHHHHhhccCCEEEE
Confidence            999 466654    23677889988877542    1223343332    5799999999975 88999999999999999


Q ss_pred             ecccC-CcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEE
Q 020928          239 IGLAK-TEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       239 ~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      +|... ....++...+..++..+.+.... .+.++++++++...+    ..+.++|++  +++++|++.+.++...+|++
T Consensus       252 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~--~~~~~a~~~~~~~~~~~kv~  325 (325)
T cd08264         252 FGTLTGGEVKLDLSDLYSKQISIIGSTGGTRKELLELVKIAKDLK----VKVWKTFKL--EEAKEALKELFSKERDGRIL  325 (325)
T ss_pred             EecCCCCCCccCHHHHhhcCcEEEEccCCCHHHHHHHHHHHHcCC----ceeEEEEcH--HHHHHHHHHHHcCCCccccC
Confidence            98642 22344445566677777776544 456788888885332    235577888  99999999999887777753

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=1.1e-34  Score=256.60  Aligned_cols=278  Identities=21%  Similarity=0.257  Sum_probs=225.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+..+.|....  ....|.++|||++|+|+++|+++++|++||+|++.+                    
T Consensus        33 i~v~~~~~~~~d~~~~~g~~~~--~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~--------------------   90 (324)
T cd08292          33 VRTTLSPIHNHDLWTIRGTYGY--KPELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAP--------------------   90 (324)
T ss_pred             EEEEEccCCHHHHHHhcCcCCC--CCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEecc--------------------
Confidence            5899999999999988765321  124588999999999999999999999999998641                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEEC-CCHHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARA  158 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G-~g~vG~~ai~la~~  158 (319)
                              ..|+|++|+.++...++++|+++++++++.++ ...++|++++.++++++++|||+| +|.+|++++|+|+.
T Consensus        91 --------~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~  162 (324)
T cd08292          91 --------VHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAA  162 (324)
T ss_pred             --------CCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHhhCCCCCCEEEEcccccHHHHHHHHHHHH
Confidence                    36899999999999999999999999998775 567788888778999999999997 59999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      +|+ .++++.+++++.+.++++|++.++++  ...++...+.++.  .+.++|++||++|+. ....++++++++|+++.
T Consensus       163 ~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~i~~~~--~~~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~  236 (324)
T cd08292         163 RGI-NVINLVRRDAGVAELRALGIGPVVST--EQPGWQDKVREAA--GGAPISVALDSVGGK-LAGELLSLLGEGGTLVS  236 (324)
T ss_pred             CCC-eEEEEecCHHHHHHHHhcCCCEEEcC--CCchHHHHHHHHh--CCCCCcEEEECCCCh-hHHHHHHhhcCCcEEEE
Confidence            999 57777777888888888998887764  3345555655553  356899999999986 77889999999999999


Q ss_pred             ecccC-CcccccchHHHhcCcEEEEeecc-----------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          239 IGLAK-TEMTVALTPAAAREVDVIGIFRY-----------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       239 ~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      +|... ....+.......+++.+.++...           .+.+.++++++.+|.+.+.  +.+.|++  +++.+|++.+
T Consensus       237 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~~--~~~~~a~~~~  312 (324)
T cd08292         237 FGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFDL--GDAAKAAAAS  312 (324)
T ss_pred             EecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEecH--HHHHHHHHHH
Confidence            98642 22334444456788888876542           2357789999999998543  3577888  9999999999


Q ss_pred             hcCCCceEEEEe
Q 020928          307 AQGGNAIKVMFN  318 (319)
Q Consensus       307 ~~~~~~gkvvi~  318 (319)
                      .++...+|++++
T Consensus       313 ~~~~~~~kvvv~  324 (324)
T cd08292         313 MRPGRAGKVLLR  324 (324)
T ss_pred             HcCCCCceEEeC
Confidence            988888999874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=1.1e-34  Score=256.66  Aligned_cols=268  Identities=19%  Similarity=0.224  Sum_probs=211.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|+|+.|+.....      ....|.++|.|++|+|++.|+   +|++||||++.                     
T Consensus        36 v~v~a~~~n~~~~~g~~~------~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~---------------------   85 (325)
T TIGR02825        36 LEALFLSVDPYMRVAAKR------LKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS---------------------   85 (325)
T ss_pred             EEEEEEecCHHHhcccCc------CCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe---------------------
Confidence            689999999976543211      123478999999999999874   69999999852                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeC----CCCCChhhh-hcc-chhHHHHHHH-HhcCCCCCCeEEEEC-CCHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKL----PDNVSLEEG-AMC-EPLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVT  152 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~i----P~~~~~~~a-a~~-~~~~~a~~~l-~~~~~~~~~~vlI~G-~g~vG~~a  152 (319)
                                ++|+||+.++.+.+.++    |+++++++| +++ .++.|||+++ +.+++++|++|||+| +|++|+++
T Consensus        86 ----------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~a  155 (325)
T TIGR02825        86 ----------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVV  155 (325)
T ss_pred             ----------cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHH
Confidence                      46899999999888877    899999987 455 5789999998 558999999999998 69999999


Q ss_pred             HHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcC
Q 020928          153 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRP  232 (319)
Q Consensus       153 i~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  232 (319)
                      +|+|+..|+ +++++++++++.++++++|++.++++... .++.+.++..   .+.++|++||++|++ ....+++++++
T Consensus       156 iqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~-~~~~~~~~~~---~~~gvdvv~d~~G~~-~~~~~~~~l~~  229 (325)
T TIGR02825       156 GQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKTV-KSLEETLKKA---SPDGYDCYFDNVGGE-FSNTVIGQMKK  229 (325)
T ss_pred             HHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEecccc-ccHHHHHHHh---CCCCeEEEEECCCHH-HHHHHHHHhCc
Confidence            999999999 68888889999999999999998886432 2333333333   246899999999986 67899999999


Q ss_pred             CCEEEEecccCC-----ccc--ccchHHHhcCcEEEEeecc-------CCCHHHHHHHHHcCCCCCCCceeeeecCChhh
Q 020928          233 GGKVCLIGLAKT-----EMT--VALTPAAAREVDVIGIFRY-------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKE  298 (319)
Q Consensus       233 ~G~~v~~g~~~~-----~~~--~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  298 (319)
                      +|+++.+|....     ..+  .....+.++++++.++...       .+.++++++++++|++.+.  ...+|++  ++
T Consensus       230 ~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l--~~  305 (325)
T TIGR02825       230 FGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYK--EYVIEGF--EN  305 (325)
T ss_pred             CcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccc--eeccccH--HH
Confidence            999999985321     111  1233466788888876532       2357789999999999544  4456777  99


Q ss_pred             HHHHHHHHhcCCCceEEEEe
Q 020928          299 IEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       299 ~~~a~~~~~~~~~~gkvvi~  318 (319)
                      +++|++.+++++..||+|++
T Consensus       306 ~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       306 MPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             HHHHHHHHhcCCCCCeEEeC
Confidence            99999999999999999974

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=4.4e-34  Score=253.19  Aligned_cols=268  Identities=20%  Similarity=0.267  Sum_probs=212.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||+.|.+...+      ..+.|.++|+|++|+|++   .+++|++||||++                      
T Consensus        38 Vkv~a~~in~~~~~~~~~------~~~~p~v~G~e~~G~V~~---~~~~~~~Gd~V~~----------------------   86 (329)
T cd08294          38 CEALFLSVDPYMRPYSKR------LNEGDTMIGTQVAKVIES---KNSKFPVGTIVVA----------------------   86 (329)
T ss_pred             EEEEEEecCHHHhccccc------CCCCCcEecceEEEEEec---CCCCCCCCCEEEe----------------------
Confidence            689999999987653221      124689999999999985   4568999999985                      


Q ss_pred             cccccCCCCCCcceeEEeecCC---ceEeCCCCCC--h----hhhhccchhHHHHHHH-HhcCCCCCCeEEEEC-CCHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAK---LCYKLPDNVS--L----EEGAMCEPLSVGVHAC-RRANVGPETNVMIMG-SGPIG  149 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~---~~~~iP~~~~--~----~~aa~~~~~~~a~~~l-~~~~~~~~~~vlI~G-~g~vG  149 (319)
                               .++|++|+.++.+   .++++|++++  +    ..++...++.|||+++ +.+++++|++|||+| +|++|
T Consensus        87 ---------~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG  157 (329)
T cd08294          87 ---------SFGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVG  157 (329)
T ss_pred             ---------eCCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHH
Confidence                     2578999999999   9999999998  2    2232345789999998 458899999999998 69999


Q ss_pred             HHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHh
Q 020928          150 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA  229 (319)
Q Consensus       150 ~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~  229 (319)
                      ++++|+|+.+|+ .|+++++++++.++++++|++.++++.  .+++.+.++++.   +.++|++||++|++ .....+++
T Consensus       158 ~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~--~~~~~~~v~~~~---~~gvd~vld~~g~~-~~~~~~~~  230 (329)
T cd08294         158 SLVGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYK--TVSLEEALKEAA---PDGIDCYFDNVGGE-FSSTVLSH  230 (329)
T ss_pred             HHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC--CccHHHHHHHHC---CCCcEEEEECCCHH-HHHHHHHh
Confidence            999999999999 688888999999999999999988764  346666655443   46899999999985 88999999


Q ss_pred             hcCCCEEEEecccCC---cc----cccchHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCCCCCceeeeecCCh
Q 020928          230 TRPGGKVCLIGLAKT---EM----TVALTPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQ  296 (319)
Q Consensus       230 l~~~G~~v~~g~~~~---~~----~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  296 (319)
                      ++++|+++.+|....   ..    ......+.++++++.++...      .+.++++++++++|++++.  ...++++  
T Consensus       231 l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l--  306 (329)
T cd08294         231 MNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYR--EHVTEGF--  306 (329)
T ss_pred             hccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCC--cccccCH--
Confidence            999999999884211   11    12234567788888876543      2236678899999999654  3345777  


Q ss_pred             hhHHHHHHHHhcCCCceEEEEeC
Q 020928          297 KEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       297 ~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +++++|++.+.+++..||+++++
T Consensus       307 ~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         307 ENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             HHHHHHHHHHHcCCCCCeEEEeC
Confidence            99999999999999999999975

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=1.2e-33  Score=250.53  Aligned_cols=298  Identities=27%  Similarity=0.404  Sum_probs=241.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC-ccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~   79 (319)
                      ||+.++++|++|+....+...   ...+|.++|||++|+|+++|+++++|++||+|+..+. .+|++|.+|.++.+++|+
T Consensus        29 v~v~~~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  105 (330)
T cd08245          29 IKIEACGVCHTDLHAAEGDWG---GSKYPLVPGHEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQ  105 (330)
T ss_pred             EEEEEEeccHHHHHHHcCCCC---CCCCCcccCccceEEEEEECCCCcccccCCEEEEccccCCCCCChhhhCcCcccCc
Confidence            578999999999999876431   1246889999999999999999999999999987543 479999999999999999


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      +..+++. ...|+|++|+.++.+.++++|+++++++++.+. .+.+||++++..+++++++|+|+|+|.+|++++++|+.
T Consensus       106 ~~~~~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~vlI~g~g~iG~~~~~~a~~  184 (330)
T cd08245         106 KAVNTGY-TTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRDAGPRPGERVAVLGIGGLGHLAVQYARA  184 (330)
T ss_pred             CccccCc-ccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHhhCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence            8655433 246899999999999999999999999998764 67889999877889999999999988899999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ .++++++++++.++++++|++.+++...  .+...   .    ...++|++||++++......++++++++|+++.
T Consensus       185 ~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~---~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~  254 (330)
T cd08245         185 MGF-ETVAITRSPDKRELARKLGADEVVDSGA--ELDEQ---A----AAGGADVILVTVVSGAAAEAALGGLRRGGRIVL  254 (330)
T ss_pred             CCC-EEEEEeCCHHHHHHHHHhCCcEEeccCC--cchHH---h----ccCCCCEEEECCCcHHHHHHHHHhcccCCEEEE
Confidence            999 6888888999999999999888765432  12111   1    124799999998876688899999999999999


Q ss_pred             ecccCCc-ccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEE
Q 020928          239 IGLAKTE-MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       239 ~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      ++..... ..+....+..++.++.+.... .+.++++++++.++.+.+   ..+.+++  ++++++++.+.++...+|++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~---~~~~~~~--~~~~~a~~~~~~~~~~~~~v  329 (330)
T cd08245         255 VGLPESPPFSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGKVKP---MIETFPL--DQANEAYERMEKGDVRFRFV  329 (330)
T ss_pred             ECCCCCCccccchHHHHhCCCEEEEeccCCHHHHHHHHHHHHcCCCcc---eEEEEcH--HHHHHHHHHHHcCCCCccee
Confidence            9854322 122234466677788777654 456788899999999853   3466777  99999999999999889987


Q ss_pred             E
Q 020928          317 F  317 (319)
Q Consensus       317 i  317 (319)
                      +
T Consensus       330 ~  330 (330)
T cd08245         330 L  330 (330)
T ss_pred             C
Confidence            5

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.9e-33  Score=244.10  Aligned_cols=279  Identities=28%  Similarity=0.385  Sum_probs=224.0

Q ss_pred             CCcceEeeccCCcccc-ccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYD-QTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~-~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++++|++|+..+ .+..... ...+|.++|+|++|+|+.+|+++++|++||+|++.                    
T Consensus        24 v~v~~~~i~~~d~~~~~~g~~~~~-~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~--------------------   82 (312)
T cd08269          24 VRVEGCGVCGSDLPAFNQGRPWFV-YPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGL--------------------   82 (312)
T ss_pred             EEEEEeeecccchHHHccCCCCcc-cCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEe--------------------
Confidence            5789999999999887 5532111 12358899999999999999999999999999964                    


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                               ..|+|++|+.++.+.++++|+++  ..++.. .++.+++++++..+++++++++|+|+|.+|++++|+|+.
T Consensus        83 ---------~~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~vlI~g~g~vg~~~~~la~~  151 (312)
T cd08269          83 ---------SGGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFRRGWIRAGKTVAVIGAGFIGLLFLQLAAA  151 (312)
T ss_pred             ---------cCCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence                     25899999999999999999998  333343 677889999888889999999999989999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|++.++++.+++++.++++++|++.+++.  ...++...+.++.  .+.++|++|||+|+.......+++|+++|+++.
T Consensus       152 ~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~~--~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~  227 (312)
T cd08269         152 AGARRVIAIDRRPARLALARELGATEVVTD--DSEAIVERVRELT--GGAGADVVIEAVGHQWPLDLAGELVAERGRLVI  227 (312)
T ss_pred             cCCcEEEEECCCHHHHHHHHHhCCceEecC--CCcCHHHHHHHHc--CCCCCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            999548888888889999999999877653  3345555665543  356899999999877678899999999999999


Q ss_pred             ecccC-CcccccchHHHhcCcEEEEeecc-----CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCC-
Q 020928          239 IGLAK-TEMTVALTPAAAREVDVIGIFRY-----RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGN-  311 (319)
Q Consensus       239 ~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-  311 (319)
                      +|... ....+......++++++.++...     .+.+++++++++++.+.+.....+++++  ++++++++.+++++. 
T Consensus       228 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~a~~~~~~~~~~  305 (312)
T cd08269         228 FGYHQDGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPL--EELGDAFEAARRRPDG  305 (312)
T ss_pred             EccCCCCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecH--HHHHHHHHHHHhCCCC
Confidence            98543 22334445677888888776533     3568889999999998654345677888  999999999998854 


Q ss_pred             ceEEEE
Q 020928          312 AIKVMF  317 (319)
Q Consensus       312 ~gkvvi  317 (319)
                      ++|+++
T Consensus       306 ~~~~~~  311 (312)
T cd08269         306 FIKGVI  311 (312)
T ss_pred             ceEEEe
Confidence            689886

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=4.4e-33  Score=246.17  Aligned_cols=283  Identities=23%  Similarity=0.304  Sum_probs=225.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|+....|.....+....|.++|||++|+|+++|+++.++++||+|++...                   
T Consensus        32 v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-------------------   92 (324)
T cd08244          32 IAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTG-------------------   92 (324)
T ss_pred             EEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCCCCCCCEEEEccC-------------------
Confidence            5789999999999888775322223456789999999999999999999999999997420                   


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEEC-CCHHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARA  158 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G-~g~vG~~ai~la~~  158 (319)
                             ...|+|++|+.++.+.++++|+++++++++.++ .+.+||..++.++++++++++|+| +|++|++++++|+.
T Consensus        93 -------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~  165 (324)
T cd08244          93 -------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKA  165 (324)
T ss_pred             -------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHH
Confidence                   136899999999999999999999999998764 667775555668999999999998 69999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ .++++++++++.++++++|++.++++.  ..++...+..+.  .+.++|+++|++|+. ....++++++++|+++.
T Consensus       166 ~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~--~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~  239 (324)
T cd08244         166 AGA-TVVGAAGGPAKTALVRALGADVAVDYT--RPDWPDQVREAL--GGGGVTVVLDGVGGA-IGRAALALLAPGGRFLT  239 (324)
T ss_pred             CCC-EEEEEeCCHHHHHHHHHcCCCEEEecC--CccHHHHHHHHc--CCCCceEEEECCChH-hHHHHHHHhccCcEEEE
Confidence            999 688888889999999999988776643  334444444432  356799999999987 67889999999999999


Q ss_pred             ecccCCc-ccccchHHHhcCcEEEEeecc-------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC
Q 020928          239 IGLAKTE-MTVALTPAAAREVDVIGIFRY-------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG  310 (319)
Q Consensus       239 ~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  310 (319)
                      +|..... ..+.......+++.+.+....       .+.+.++++++.++.+.  +...+.+++  +++++|++.+.++.
T Consensus       240 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~--~~~~~a~~~~~~~~  315 (324)
T cd08244         240 YGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLV--PVVGQTFPL--ERAAEAHAALEARS  315 (324)
T ss_pred             EecCCCCCCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCcc--CccceEEeH--HHHHHHHHHHHcCC
Confidence            9864322 223333455778887766543       23467788999999884  346677888  99999999999999


Q ss_pred             CceEEEEeC
Q 020928          311 NAIKVMFNL  319 (319)
Q Consensus       311 ~~gkvvi~~  319 (319)
                      ..+|+++++
T Consensus       316 ~~~kvv~~~  324 (324)
T cd08244         316 TVGKVLLLP  324 (324)
T ss_pred             CCceEEEeC
Confidence            999999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7e-33  Score=242.84  Aligned_cols=270  Identities=34%  Similarity=0.633  Sum_probs=221.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC-ccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++++|++|+....+..   .....|.++|+|++|+|+++|++++.|++||+|++.+. .+|+.|++|..+.+..|+
T Consensus        31 V~v~~~~l~~~d~~~~~g~~---~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~  107 (306)
T cd08258          31 IKVAAAGICGSDLHIYKGDY---DPVETPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCP  107 (306)
T ss_pred             EEEEEEEechhhHHHHcCCC---CcCCCCeeeccceEEEEEEECCCcCcCCCCCEEEEccCcCCCCCCcchhCcCcccCC
Confidence            68899999999998887643   12345789999999999999999999999999998764 579999999999999998


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHH-hcCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACR-RANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~-~~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      ...+++ ....|+|+||+.++...++++|+++++++|+.+.++.+||+++. .++++++++|+|.|+|.+|++++|+|+.
T Consensus       108 ~~~~~~-~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~  186 (306)
T cd08258         108 HRKGIG-TQADGGFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKL  186 (306)
T ss_pred             CCceee-ecCCCceEEEEEcchHHeEECcCCCCHHHHHhhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence            754443 23469999999999999999999999999886678889999974 4889999999998889999999999999


Q ss_pred             cCCCeEEEe--cCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEE
Q 020928          159 FGAPRIIIT--DVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV  236 (319)
Q Consensus       159 ~g~~~vv~v--~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~  236 (319)
                      .|++ ++++  ++++++.++++++|++.+ ++  ...++...+..+.  .+.++|++||++|+.......+++|+++|++
T Consensus       187 ~G~~-v~~~~~~~~~~~~~~~~~~g~~~~-~~--~~~~~~~~l~~~~--~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~  260 (306)
T cd08258         187 QGAT-VVVVGTEKDEVRLDVAKELGADAV-NG--GEEDLAELVNEIT--DGDGADVVIECSGAVPALEQALELLRKGGRI  260 (306)
T ss_pred             cCCE-EEEECCCCCHHHHHHHHHhCCccc-CC--CcCCHHHHHHHHc--CCCCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence            9995 5554  345667888899998776 54  3345555555443  3567999999998766888999999999999


Q ss_pred             EEecccC-CcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcC
Q 020928          237 CLIGLAK-TEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSG  280 (319)
Q Consensus       237 v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g  280 (319)
                      +.+|... ....+....++++++++.|++.. .++++++++++++|
T Consensus       261 v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~  306 (306)
T cd08258         261 VQVGIFGPLAASIDVERIIQKELSVIGSRSSTPASWETALRLLASG  306 (306)
T ss_pred             EEEcccCCCCcccCHHHHhhcCcEEEEEecCchHhHHHHHHHHhcC
Confidence            9998754 23455667788899999999886 66799999998875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=9.9e-33  Score=245.25  Aligned_cols=278  Identities=18%  Similarity=0.281  Sum_probs=216.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++++|++|+..+.+...   ...+|.++|+|++|+|+++|+++++|++||+|++..                    
T Consensus        34 Ikv~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~--------------------   90 (336)
T TIGR02817        34 VEVKAISVNPVDTKVRARMAP---EAGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAG--------------------   90 (336)
T ss_pred             EEEEEEEcChHHHHHHcCCCC---CCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcC--------------------
Confidence            689999999999988876421   234688999999999999999999999999998631                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCC-----CCeEEEEC-CCHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGP-----ETNVMIMG-SGPIGLVT  152 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~-----~~~vlI~G-~g~vG~~a  152 (319)
                           .....|+|++|+.++.+.++++|+++++++++.++ ...+||+++ ...++++     +++|||+| +|++|+++
T Consensus        91 -----~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~  165 (336)
T TIGR02817        91 -----DIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSIL  165 (336)
T ss_pred             -----CCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHH
Confidence                 01236899999999999999999999999999875 678899998 4477776     99999998 59999999


Q ss_pred             HHHHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhc
Q 020928          153 LLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       153 i~la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  231 (319)
                      +|+|+.+ |+ .|+++++++++.++++++|+++++++..   ++...+.++   .+.++|+++|++++.......+++++
T Consensus       166 ~~~ak~~~G~-~vi~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~~i~~~---~~~~vd~vl~~~~~~~~~~~~~~~l~  238 (336)
T TIGR02817       166 IQLARQLTGL-TVIATASRPESQEWVLELGAHHVIDHSK---PLKAQLEKL---GLEAVSYVFSLTHTDQHFKEIVELLA  238 (336)
T ss_pred             HHHHHHhCCC-EEEEEcCcHHHHHHHHHcCCCEEEECCC---CHHHHHHHh---cCCCCCEEEEcCCcHHHHHHHHHHhc
Confidence            9999998 98 6888888889999999999998887532   455555542   35679999999876668899999999


Q ss_pred             CCCEEEEecccCCcccccchHHHhcCcEEEEeecc-------------CCCHHHHHHHHHcCCCCCCCceeeeec-CChh
Q 020928          232 PGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-------------RSTWPLCIEFLRSGKIDVKPLITHRFG-FTQK  297 (319)
Q Consensus       232 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~  297 (319)
                      ++|+++.++..   ..+....+..+++.+......             ...++++++++.++.+.  +.+.+.++ ++++
T Consensus       239 ~~G~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~~~~~  313 (336)
T TIGR02817       239 PQGRFALIDDP---AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIR--TTLAETFGTINAA  313 (336)
T ss_pred             cCCEEEEEccc---ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCee--ccchhccCCCCHH
Confidence            99999987532   123333344444544432111             13467899999999884  33334444 1238


Q ss_pred             hHHHHHHHHhcCCCceEEEEe
Q 020928          298 EIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       298 ~~~~a~~~~~~~~~~gkvvi~  318 (319)
                      ++++|++.+.+++..||++++
T Consensus       314 ~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       314 NLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             HHHHHHHHHHcCCccceEEEe
Confidence            999999999999888999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=5.2e-32  Score=233.02  Aligned_cols=263  Identities=34%  Similarity=0.598  Sum_probs=212.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|+.|+....+...  ....+|.++|+|++|+|+++|+++++|++||+|++.+..+|++|.+|..    +|..
T Consensus         4 i~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~~   77 (271)
T cd05188           4 VRVEAAGLCGTDLHIRRGGYP--PPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCPG   77 (271)
T ss_pred             EEEEEEEecchhHHHHcCCCC--cCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCCC
Confidence            689999999999999887542  1245688999999999999999999999999999999999999999997    5655


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHh-cCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      ..+.+ ....|++++|+.++.+.++++|+++++++++.+ .++.+||++++. ..++++++|||+|+|++|++++++++.
T Consensus        78 ~~~~~-~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~  156 (271)
T cd05188          78 GGILG-EGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA  156 (271)
T ss_pred             CCEec-cccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence            54433 345799999999999999999999999999988 589999999866 556999999999976699999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|. +++++++++++.+.++++|++.++++.  ..++...+.   ...+.++|++||++++......++++++++|+++.
T Consensus       157 ~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~---~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~  230 (271)
T cd05188         157 AGA-RVIVTDRSDEKLELAKELGADHVIDYK--EEDLEEELR---LTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVV  230 (271)
T ss_pred             cCC-eEEEEcCCHHHHHHHHHhCCceeccCC--cCCHHHHHH---HhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEE
Confidence            997 788888999999999999988776543  234444433   22456899999999984588899999999999999


Q ss_pred             ecccCCcccc-cchHHHhcCcEEEEeecc-CCCHHHHHHH
Q 020928          239 IGLAKTEMTV-ALTPAAAREVDVIGIFRY-RSTWPLCIEF  276 (319)
Q Consensus       239 ~g~~~~~~~~-~~~~~~~~~~~i~~~~~~-~~~~~~~~~~  276 (319)
                      ++........ .......+++.+.++... ...+++++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (271)
T cd05188         231 VGGTSGGPPLDDLRRLLFKELTIIGSTGGTREDFEEALDL  270 (271)
T ss_pred             EccCCCCCCcccHHHHHhcceEEEEeecCCHHHHHHHHhh
Confidence            9865433222 234466788888888765 3356665554

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=9.5e-33  Score=241.74  Aligned_cols=279  Identities=28%  Similarity=0.416  Sum_probs=206.7

Q ss_pred             CCcceEeeccCCcccccccccccc-ccCCCcccccceeEEE---EEeC-CCCCCCCCCCEEEEccCccCCCCccccCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANF-IVKKPMVIGHECAGII---EEVG-SEVKSLEVGDRVALEPGISCGHCSLCKAGSY   75 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~-~~~~p~i~G~e~~G~V---~~~G-~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~   75 (319)
                      ||+.++++||.|+.++.|...... ...+|.+.++++.|++   ...| ..+..+..||++..                 
T Consensus        37 i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~-----------------   99 (347)
T KOG1198|consen   37 IKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA-----------------   99 (347)
T ss_pred             EEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee-----------------
Confidence            578899999999999998653322 1256655565555553   3333 22334555655543                 


Q ss_pred             CCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-c------CCCCCCeEEEEC-CC
Q 020928           76 NLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-A------NVGPETNVMIMG-SG  146 (319)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~------~~~~~~~vlI~G-~g  146 (319)
                                 ....|+|+||+.+|...++++|+++++++||+++ ...+||.++.. .      +.++|++|||+| +|
T Consensus       100 -----------~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsg  168 (347)
T KOG1198|consen  100 -----------FLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSG  168 (347)
T ss_pred             -----------ccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCc
Confidence                       2358999999999999999999999999999886 78899999955 6      799999999996 69


Q ss_pred             HHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHH
Q 020928          147 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTA  226 (319)
Q Consensus       147 ~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~  226 (319)
                      ++|++++|+|+..|+ ..+++.+++++.++++++|++++++|..  +++.+.+++.   .+.+||+||||+|+. .....
T Consensus       169 gVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy~~--~~~~e~~kk~---~~~~~DvVlD~vg~~-~~~~~  241 (347)
T KOG1198|consen  169 GVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDYKD--ENVVELIKKY---TGKGVDVVLDCVGGS-TLTKS  241 (347)
T ss_pred             HHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecCCC--HHHHHHHHhh---cCCCccEEEECCCCC-ccccc
Confidence            999999999999996 5666779999999999999999999865  4555444433   367999999999987 66777


Q ss_pred             HHhhcCCCEEEEecccCC---ccccc-chHHHhcCcEEEE----------e-e-ccCCCHHHHHHHHHcCCCCCCCceee
Q 020928          227 LNATRPGGKVCLIGLAKT---EMTVA-LTPAAAREVDVIG----------I-F-RYRSTWPLCIEFLRSGKIDVKPLITH  290 (319)
Q Consensus       227 ~~~l~~~G~~v~~g~~~~---~~~~~-~~~~~~~~~~i~~----------~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~  290 (319)
                      ..++..+|+...++..+.   ..... ... ..+.+++..          . . ...+.++.+.++++++++  +|.+.+
T Consensus       242 ~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gki--kp~i~~  318 (347)
T KOG1198|consen  242 LSCLLKGGGGAYIGLVGDELANYKLDDLWQ-SANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGKI--KPVIDS  318 (347)
T ss_pred             hhhhccCCceEEEEeccccccccccccchh-hhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCcc--cCCcce
Confidence            788888876554443221   11111 000 011111111          0 1 115568899999999977  888889


Q ss_pred             eecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          291 RFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       291 ~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      .|++  +++++|++.+.++...||+++++
T Consensus       319 ~~p~--~~~~ea~~~~~~~~~~GK~vl~~  345 (347)
T KOG1198|consen  319 VYPF--SQAKEAFEKLEKSHATGKVVLEK  345 (347)
T ss_pred             eeeH--HHHHHHHHHHhhcCCcceEEEEe
Confidence            9999  99999999999999999999863

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=4.9e-32  Score=241.31  Aligned_cols=283  Identities=21%  Similarity=0.246  Sum_probs=219.9

Q ss_pred             CCcceEeeccCCccccccccccccc--cCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFI--VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC   78 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~--~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~   78 (319)
                      |||.++|+|++|+..+.|.......  ...|.++|||++|+|+++|+++.+|++||+|++..                  
T Consensus        34 v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~------------------   95 (341)
T cd08290          34 VKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLR------------------   95 (341)
T ss_pred             EEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEecC------------------
Confidence            5889999999999988775321110  12678999999999999999999999999999641                  


Q ss_pred             CCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHH
Q 020928           79 PEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLA  155 (319)
Q Consensus        79 ~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~l  155 (319)
                               ...|+|++|+.++.+.++++|+++++++++.++ .+.+||+++.. .+++++++|||+| +|++|++++|+
T Consensus        96 ---------~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~  166 (341)
T cd08290          96 ---------PGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQL  166 (341)
T ss_pred             ---------CCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHH
Confidence                     125899999999999999999999999998875 77889999854 7899999999998 59999999999


Q ss_pred             HHHcCCCeEEEecCCh----hHHHHHHHcCCCEeeccCCC-CcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhh
Q 020928          156 ARAFGAPRIIITDVDV----QRLSIARNLGADETAKVSTD-IEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT  230 (319)
Q Consensus       156 a~~~g~~~vv~v~~~~----~~~~~~~~~g~~~v~~~~~~-~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l  230 (319)
                      |+..|++ ++++.+++    ++.++++++|++.++++... ..++...+..+.  .+ ++|++||++|+. .....++++
T Consensus       167 a~~~g~~-v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~--~~-~~d~vld~~g~~-~~~~~~~~l  241 (341)
T cd08290         167 AKLLGIK-TINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAP--GG-RPKLALNCVGGK-SATELARLL  241 (341)
T ss_pred             HHHcCCe-EEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHc--CC-CceEEEECcCcH-hHHHHHHHh
Confidence            9999994 55555554    67788889999988765321 013444444433  23 799999999986 677889999


Q ss_pred             cCCCEEEEecccC-CcccccchHHHhcCcEEEEeecc-----------CCCHHHHHHHHHcCCCCCCCceeeee---cCC
Q 020928          231 RPGGKVCLIGLAK-TEMTVALTPAAAREVDVIGIFRY-----------RSTWPLCIEFLRSGKIDVKPLITHRF---GFT  295 (319)
Q Consensus       231 ~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~  295 (319)
                      +++|+++.+|... ....+.......+++.+.+....           .+.+.++++++.++.+.+.  ...++   ++ 
T Consensus       242 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~-  318 (341)
T cd08290         242 SPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAP--PVEKVTDDPL-  318 (341)
T ss_pred             CCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCC--cccccccCCH-
Confidence            9999999998532 22234444556788888876543           1247778999999998543  33445   77 


Q ss_pred             hhhHHHHHHHHhcCCCceEEEEeC
Q 020928          296 QKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       296 ~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                       ++++++++.+.++...+|+|++.
T Consensus       319 -~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         319 -EEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             -HHHHHHHHHHhhcCCCCeEEEeC
Confidence             99999999999998999999863

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2e-31  Score=236.67  Aligned_cols=301  Identities=27%  Similarity=0.349  Sum_probs=236.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++|+|++|+....|....  ....|.++|||++|+|+++|+++.+|++||+|++.....|+.      +.+.+|..
T Consensus        32 i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~------~~~~~~~~  103 (336)
T cd08276          32 VRVHAVSLNYRDLLILNGRYPP--PVKDPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLD------GPPTAEDE  103 (336)
T ss_pred             EEEEEEecCHHHHHHhcCCCCC--CCCCCcccccceeEEEEEeCCCCcCCCCCCEEEEeccccccc------cccccccc
Confidence            5789999999999988764322  124688999999999999999999999999999876544433      33334433


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      ..+.+ ....|+|++|+.++.+.++++|+++++.+++.+. .+.+||+++.. .+++++++|+|+|+|++|++++++|+.
T Consensus       104 ~~~~~-~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~  182 (336)
T cd08276         104 ASALG-GPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKA  182 (336)
T ss_pred             ccccc-cccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence            22222 2347899999999999999999999999888775 67889999854 789999999999999999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ .+++++.++++.++++++|.+.+++... ..++...+..+.  .+.++|++||++++. ....++++++++|+++.
T Consensus       183 ~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~--~~~~~d~~i~~~~~~-~~~~~~~~l~~~G~~v~  257 (336)
T cd08276         183 AGA-RVIATSSSDEKLERAKALGADHVINYRT-TPDWGEEVLKLT--GGRGVDHVVEVGGPG-TLAQSIKAVAPGGVISL  257 (336)
T ss_pred             cCC-EEEEEeCCHHHHHHHHHcCCCEEEcCCc-ccCHHHHHHHHc--CCCCCcEEEECCChH-HHHHHHHhhcCCCEEEE
Confidence            999 5888888889999999999888776432 134555555443  356899999999865 78899999999999999


Q ss_pred             ecccCCc-ccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEE
Q 020928          239 IGLAKTE-MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       239 ~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      +|..... ..........+++.+.+.... .+.+.++++++.++.+.+  ...+.+++  ++++++++.+.++...+|++
T Consensus       258 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~~~~--~~~~~a~~~~~~~~~~~kvv  333 (336)
T cd08276         258 IGFLSGFEAPVLLLPLLTKGATLRGIAVGSRAQFEAMNRAIEAHRIRP--VIDRVFPF--EEAKEAYRYLESGSHFGKVV  333 (336)
T ss_pred             EccCCCCccCcCHHHHhhcceEEEEEecCcHHHHHHHHHHHHcCCccc--ccCcEEeH--HHHHHHHHHHHhCCCCceEE
Confidence            9864332 233344556788888887654 456888899998887743  34567788  99999999999888889999


Q ss_pred             EeC
Q 020928          317 FNL  319 (319)
Q Consensus       317 i~~  319 (319)
                      +++
T Consensus       334 ~~~  336 (336)
T cd08276         334 IRV  336 (336)
T ss_pred             EeC
Confidence            874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=100.00  E-value=1.7e-31  Score=236.01  Aligned_cols=278  Identities=23%  Similarity=0.321  Sum_probs=222.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|+.|+.++.+....  ....|.++|||++|+|+.+|++++++++||+|++.+                    
T Consensus        31 i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~--------------------   88 (323)
T cd05282          31 VRMLAAPINPSDLITISGAYGS--RPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLG--------------------   88 (323)
T ss_pred             EEEEeccCCHHHHHHhcCcCCC--CCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeC--------------------
Confidence            5889999999999988764322  234678999999999999999999999999999741                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                              ..|+|++|+.++...++++|+++++++++.++ ...+||+++.. .+++++++|+|+|+ |.+|++++++|+
T Consensus        89 --------~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~  160 (323)
T cd05282          89 --------GEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAK  160 (323)
T ss_pred             --------CCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHH
Confidence                    15899999999999999999999998888764 67788988754 77899999999985 999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      .+|+ .++++.+++++.++++++|++.++++..  .++...+.+..  .+.++|++||++|+. .....+++++++|+++
T Consensus       161 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~--~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v  234 (323)
T cd05282         161 LLGF-KTINVVRRDEQVEELKALGADEVIDSSP--EDLAQRVKEAT--GGAGARLALDAVGGE-SATRLARSLRPGGTLV  234 (323)
T ss_pred             HCCC-eEEEEecChHHHHHHHhcCCCEEecccc--hhHHHHHHHHh--cCCCceEEEECCCCH-HHHHHHHhhCCCCEEE
Confidence            9999 5777778888889999999988877532  34444444433  356899999999987 5678899999999999


Q ss_pred             EecccCCc-ccccchHHHhcCcEEEEeecc-----------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHH
Q 020928          238 LIGLAKTE-MTVALTPAAAREVDVIGIFRY-----------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI  305 (319)
Q Consensus       238 ~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~  305 (319)
                      .+|..... ..+....+..+++.+.+....           .+.+.++++++.++.+.  +...++|++  ++++++++.
T Consensus       235 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~--~~~~~a~~~  310 (323)
T cd05282         235 NYGLLSGEPVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLT--TPVGAKFPL--EDFEEAVAA  310 (323)
T ss_pred             EEccCCCCCCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcc--cCccceecH--HHHHHHHHH
Confidence            99864332 233444444478887776543           13477788999999885  335677888  999999999


Q ss_pred             HhcCCCceEEEEe
Q 020928          306 SAQGGNAIKVMFN  318 (319)
Q Consensus       306 ~~~~~~~gkvvi~  318 (319)
                      +.++...+|++++
T Consensus       311 ~~~~~~~~kvv~~  323 (323)
T cd05282         311 AEQPGRGGKVLLT  323 (323)
T ss_pred             HhcCCCCceEeeC
Confidence            9998888999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-31  Score=236.09  Aligned_cols=280  Identities=21%  Similarity=0.323  Sum_probs=221.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|+.|+....+....  ....|.++|+|++|+|+++|+++.++++||+|++..                    
T Consensus        33 v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~--------------------   90 (334)
T PTZ00354         33 IKVSAAGVNRADTLQRQGKYPP--PPGSSEILGLEVAGYVEDVGSDVKRFKEGDRVMALL--------------------   90 (334)
T ss_pred             EEEEEEecCHHHHHHhCCCCCC--CCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEec--------------------
Confidence            5899999999999888764311  223467899999999999999999999999998631                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                              .+|+|++|+.++.+.++++|+++++++++.+ .++.+||+++.. ++++++++|+|+| +|++|++++++|+
T Consensus        91 --------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~  162 (334)
T PTZ00354         91 --------PGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAE  162 (334)
T ss_pred             --------CCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHH
Confidence                    2589999999999999999999999888876 477889999855 8899999999998 6999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .++++.+++++.++++++|++.++++... .++...+.++.  .+.++|++||++++. ....++++++++|+++
T Consensus       163 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~--~~~~~d~~i~~~~~~-~~~~~~~~l~~~g~~i  237 (334)
T PTZ00354        163 KYGA-ATIITTSSEEKVDFCKKLAAIILIRYPDE-EGFAPKVKKLT--GEKGVNLVLDCVGGS-YLSETAEVLAVDGKWI  237 (334)
T ss_pred             HcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCCh-hHHHHHHHHHh--CCCCceEEEECCchH-HHHHHHHHhccCCeEE
Confidence            9999 45667788999999999999877764321 12555555443  356799999999865 8889999999999999


Q ss_pred             EecccCC-ccc-ccchHHHhcCcEEEEeeccC-----------CCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHH
Q 020928          238 LIGLAKT-EMT-VALTPAAAREVDVIGIFRYR-----------STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE  304 (319)
Q Consensus       238 ~~g~~~~-~~~-~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~  304 (319)
                      .++.... ... +....+..+...+.++....           +.++++++++.++.+.  +...+.+++  ++++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~--~~~~~~~~  313 (334)
T PTZ00354        238 VYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIK--PIVDRTYPL--EEVAEAHT  313 (334)
T ss_pred             EEecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCcc--CccccEEcH--HHHHHHHH
Confidence            9985332 212 44555566666777754321           2246788889899884  345677888  99999999


Q ss_pred             HHhcCCCceEEEEeC
Q 020928          305 ISAQGGNAIKVMFNL  319 (319)
Q Consensus       305 ~~~~~~~~gkvvi~~  319 (319)
                      .+.++...+|+++++
T Consensus       314 ~~~~~~~~~kvvv~~  328 (334)
T PTZ00354        314 FLEQNKNIGKVVLTV  328 (334)
T ss_pred             HHHhCCCCceEEEec
Confidence            999888889999863

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2e-31  Score=233.69  Aligned_cols=265  Identities=23%  Similarity=0.292  Sum_probs=215.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|+.|+++..+       ...|.++|||++|+|+++|+++.+|++||+|++..                    
T Consensus        31 v~v~~~~i~~~d~~~~~~-------~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~--------------------   83 (305)
T cd08270          31 VRVAAISLNRGELKFAAE-------RPDGAVPGWDAAGVVERAAADGSGPAVGARVVGLG--------------------   83 (305)
T ss_pred             EEEEEEecCHHHHHhhcc-------CCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEec--------------------
Confidence            588999999999987652       13367899999999999999999999999998631                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECC-CHHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGS-GPIGLVTLLAARA  158 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~-g~vG~~ai~la~~  158 (319)
                              ..|+|++|+.++.+.++++|+++++++++.++ .+.+||+++......++++++|+|+ |++|++++++|+.
T Consensus        84 --------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~  155 (305)
T cd08270          84 --------AMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPLLGRRVLVTGASGGVGRFAVQLAAL  155 (305)
T ss_pred             --------CCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHH
Confidence                    26899999999999999999999999998875 6789999987644446999999985 9999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ .++.+++++++.+.++++|++..+....          ++.   +.++|+++|++|+. .....+++++++|+++.
T Consensus       156 ~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~---~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~  220 (305)
T cd08270         156 AGA-HVVAVVGSPARAEGLRELGAAEVVVGGS----------ELS---GAPVDLVVDSVGGP-QLARALELLAPGGTVVS  220 (305)
T ss_pred             cCC-EEEEEeCCHHHHHHHHHcCCcEEEeccc----------ccc---CCCceEEEECCCcH-HHHHHHHHhcCCCEEEE
Confidence            999 6888888899999999999875543111          111   24799999999986 78899999999999999


Q ss_pred             ecccCCc-ccccchHHHh--cCcEEEEeecc-----CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC
Q 020928          239 IGLAKTE-MTVALTPAAA--REVDVIGIFRY-----RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG  310 (319)
Q Consensus       239 ~g~~~~~-~~~~~~~~~~--~~~~i~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  310 (319)
                      +|..... ..+....+..  ++..+.++...     .+.+..+++++.++++.+  .+.+++++  ++++++++.+.++.
T Consensus       221 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~--~~~~~a~~~~~~~~  296 (305)
T cd08270         221 VGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDP--RIGWRGSW--TEIDEAAEALLARR  296 (305)
T ss_pred             EeccCCCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCccc--eeccEEcH--HHHHHHHHHHHcCC
Confidence            9864322 2333444443  57777776543     345778999999999953  35677888  99999999999998


Q ss_pred             CceEEEEeC
Q 020928          311 NAIKVMFNL  319 (319)
Q Consensus       311 ~~gkvvi~~  319 (319)
                      ..||+++++
T Consensus       297 ~~gkvvi~~  305 (305)
T cd08270         297 FRGKAVLDV  305 (305)
T ss_pred             CCceEEEeC
Confidence            999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=1.9e-31  Score=236.16  Aligned_cols=280  Identities=23%  Similarity=0.289  Sum_probs=217.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|+.+..+...   ....|.++|||++|+|+.+|++++.+++||+|++.                     
T Consensus        33 i~v~~~gi~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~---------------------   88 (327)
T PRK10754         33 VENKAIGINYIDTYIRSGLYP---PPSLPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYA---------------------   88 (327)
T ss_pred             EEEEEEEcCHHHhhhcCCCCC---CCCCCCccCcceEEEEEEeCCCCCCCCCCCEEEEC---------------------
Confidence            588999999999988876431   12358899999999999999999999999999852                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                            ....|+|++|+.++...++++|+++++++++.++ ...++|+++.. ++++++++++|+| +|.+|++++|+|+
T Consensus        89 ------~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak  162 (327)
T PRK10754         89 ------QSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAK  162 (327)
T ss_pred             ------CCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHH
Confidence                  1135899999999999999999999999988764 66788888754 7899999999996 6999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      .+|+ .++++++++++.++++++|++.+++.  ...++.+.+..+.  .+.++|++||++|+. .....+++++++|+++
T Consensus       163 ~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~--~~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~v  236 (327)
T PRK10754        163 ALGA-KLIGTVGSAQKAQRAKKAGAWQVINY--REENIVERVKEIT--GGKKVRVVYDSVGKD-TWEASLDCLQRRGLMV  236 (327)
T ss_pred             HcCC-EEEEEeCCHHHHHHHHHCCCCEEEcC--CCCcHHHHHHHHc--CCCCeEEEEECCcHH-HHHHHHHHhccCCEEE
Confidence            9999 57788888999999999999887764  3345555555554  356899999999975 7888999999999999


Q ss_pred             EecccCCc-ccccchHHHhcCc------EEEEeecc----CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          238 LIGLAKTE-MTVALTPAAAREV------DVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       238 ~~g~~~~~-~~~~~~~~~~~~~------~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      .+|..... ..+....+..++.      .+.+....    .+.+.++++++.+|.+++.....++|++  ++++++++.+
T Consensus       237 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~--~~~~~a~~~~  314 (327)
T PRK10754        237 SFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKFPL--KDAQRAHEIL  314 (327)
T ss_pred             EEccCCCCCCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcH--HHHHHHHHHH
Confidence            99854322 1122222222221      11121111    1234568899999998654444577888  9999999999


Q ss_pred             hcCCCceEEEEe
Q 020928          307 AQGGNAIKVMFN  318 (319)
Q Consensus       307 ~~~~~~gkvvi~  318 (319)
                      +++...+|+|+.
T Consensus       315 ~~~~~~~~~~~~  326 (327)
T PRK10754        315 ESRATQGSSLLI  326 (327)
T ss_pred             HcCCCcceEEEe
Confidence            999999999985

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=100.00  E-value=4.5e-31  Score=233.94  Aligned_cols=277  Identities=21%  Similarity=0.267  Sum_probs=215.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|++...|....  ...+|.++|||++|+|+.+|+++++|++||+|++.                     
T Consensus        35 i~v~~~gi~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~---------------------   91 (329)
T cd08250          35 VKNRFVGINASDINFTAGRYDP--GVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATM---------------------   91 (329)
T ss_pred             EEEEEEecCHHHHHHHhCCCCC--CCCCCcccCceeEEEEEEECCCCCCCCCCCEEEEe---------------------
Confidence            5899999999999987764321  13578899999999999999999999999999963                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAARA  158 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~~  158 (319)
                              ..|+|++|+.++.+.++++|++. .+.++....+.+||+++.. .+++++++++|+| +|.+|++++|+|+.
T Consensus        92 --------~~g~~~s~~~v~~~~~~~ip~~~-~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~  162 (329)
T cd08250          92 --------SFGAFAEYQVVPARHAVPVPELK-PEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKL  162 (329)
T ss_pred             --------cCcceeEEEEechHHeEECCCCc-chhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHH
Confidence                    25899999999999999999973 3333344578899999855 7899999999998 69999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ .++++++++++.+.++++|++.+++..  ..++...+.+.   .+.++|++||++|+. .....+++++++|+++.
T Consensus       163 ~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~--~~~~~~~~~~~---~~~~vd~v~~~~g~~-~~~~~~~~l~~~g~~v~  235 (329)
T cd08250         163 AGC-HVIGTCSSDEKAEFLKSLGCDRPINYK--TEDLGEVLKKE---YPKGVDVVYESVGGE-MFDTCVDNLALKGRLIV  235 (329)
T ss_pred             cCC-eEEEEeCcHHHHHHHHHcCCceEEeCC--CccHHHHHHHh---cCCCCeEEEECCcHH-HHHHHHHHhccCCeEEE
Confidence            999 577777888888999999987776543  23444444433   246799999999974 88899999999999999


Q ss_pred             ecccCCc---c------ccc-chHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHH
Q 020928          239 IGLAKTE---M------TVA-LTPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDA  302 (319)
Q Consensus       239 ~g~~~~~---~------~~~-~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a  302 (319)
                      +|.....   .      ... ......+++.+.+....      .+.+.++++++.++.+.+.....+.+++  +++++|
T Consensus       236 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~a  313 (329)
T cd08250         236 IGFISGYQSGTGPSPVKGATLPPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGL--ESVADA  313 (329)
T ss_pred             EecccCCcccCcccccccccccHHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCH--HHHHHH
Confidence            9854321   0      011 12234567777776432      3346778899999988653334455677  999999


Q ss_pred             HHHHhcCCCceEEEEe
Q 020928          303 FEISAQGGNAIKVMFN  318 (319)
Q Consensus       303 ~~~~~~~~~~gkvvi~  318 (319)
                      ++.+.++...+|++++
T Consensus       314 ~~~~~~~~~~~kvvv~  329 (329)
T cd08250         314 VDYLYSGKNIGKVVVE  329 (329)
T ss_pred             HHHHHcCCCCceEEeC
Confidence            9999998888999874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=2.8e-31  Score=218.57  Aligned_cols=273  Identities=16%  Similarity=0.143  Sum_probs=216.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeC--CCCCCCCCCCEEEEccCccCCCCccccCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVG--SEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC   78 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G--~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~   78 (319)
                      +|+.|.+++|.    ++|.+........|+-+|-..+|-++...  ++...|++||.|..                    
T Consensus        44 l~~~ylS~DPy----mRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~--------------------   99 (340)
T COG2130          44 LRTLYLSLDPY----MRGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVG--------------------   99 (340)
T ss_pred             EEEEEeccCHH----HeecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEe--------------------
Confidence            46788888883    33433333345678888877665444332  56788999999986                    


Q ss_pred             CCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhh---ccchhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHH
Q 020928           79 PEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA---MCEPLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTL  153 (319)
Q Consensus        79 ~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa---~~~~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai  153 (319)
                                 ..+|+||..++.+.+.++++..-...+.   +-++..|||.+|.+ +..|+|++|+|.+ +|++|..+.
T Consensus       100 -----------~~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvg  168 (340)
T COG2130         100 -----------VSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVG  168 (340)
T ss_pred             -----------cccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHH
Confidence                       3589999999999999998664333333   34689999999855 9999999999997 699999999


Q ss_pred             HHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcC
Q 020928          154 LAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRP  232 (319)
Q Consensus       154 ~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  232 (319)
                      |+||..|+ +||.+..+++|.+++++ +|.+.+++|..  +++...+.+.   ...|+|+.||++|++ .+...+..|+.
T Consensus       169 QiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~--~d~~~~L~~a---~P~GIDvyfeNVGg~-v~DAv~~~ln~  241 (340)
T COG2130         169 QIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA--EDFAQALKEA---CPKGIDVYFENVGGE-VLDAVLPLLNL  241 (340)
T ss_pred             HHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc--ccHHHHHHHH---CCCCeEEEEEcCCch-HHHHHHHhhcc
Confidence            99999998 89999999999999998 99999999865  3777766554   478999999999997 99999999999


Q ss_pred             CCEEEEecccC---Cc-cc---ccchHHHhcCcEEEEeecc-------CCCHHHHHHHHHcCCCCCCCceeeeecCChhh
Q 020928          233 GGKVCLIGLAK---TE-MT---VALTPAAAREVDVIGIFRY-------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKE  298 (319)
Q Consensus       233 ~G~~v~~g~~~---~~-~~---~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  298 (319)
                      .+|+..||...   .. .+   -....++.+.+.+.|+...       .+..+++..|+.+|+++...  +.+-++  +.
T Consensus       242 ~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~e--ti~dGl--En  317 (340)
T COG2130         242 FARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRE--TIVDGL--EN  317 (340)
T ss_pred             ccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEe--eehhhh--hc
Confidence            99999999522   11 11   1223366778999998762       35678899999999997665  333478  99


Q ss_pred             HHHHHHHHhcCCCceEEEEeC
Q 020928          299 IEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       299 ~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +++||.-+-+++.+||+|+++
T Consensus       318 aP~Af~gLl~G~N~GK~vvKv  338 (340)
T COG2130         318 APEAFIGLLSGKNFGKLVVKV  338 (340)
T ss_pred             cHHHHHHHhcCCccceEEEEe
Confidence            999999999999999999985

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=5.9e-31  Score=232.03  Aligned_cols=277  Identities=24%  Similarity=0.333  Sum_probs=215.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+....+...   ....|.++|||++|+|+++|.  .++++||+|++.....                 
T Consensus        32 v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~vG~--~~~~~Gd~V~~~~~~~-----------------   89 (320)
T cd08243          32 IRVKAFGLNRSEIFTRQGHSP---SVKFPRVLGIEAVGEVEEAPG--GTFTPGQRVATAMGGM-----------------   89 (320)
T ss_pred             EEEEEEecCHHHHHHhcCCCC---CCCCCccccceeEEEEEEecC--CCCCCCCEEEEecCCC-----------------
Confidence            578999999999998876431   234578999999999999995  5799999998752100                 


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                           +....|+|++|+.++...++++|+++++++++.++ ++.+||+++.. .+++++++|+|+|+ |++|++++|+|+
T Consensus        90 -----~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~  164 (320)
T cd08243          90 -----GRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAK  164 (320)
T ss_pred             -----CCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHH
Confidence                 01235899999999999999999999999888774 78899999865 77999999999985 999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .|+++.+++++.+.++++|++.++..   ..++...+.++    +.++|++||++|+. .....+++++++|+++
T Consensus       165 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~i~~~----~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~v  235 (320)
T cd08243         165 ALGA-TVTATTRSPERAALLKELGADEVVID---DGAIAEQLRAA----PGGFDKVLELVGTA-TLKDSLRHLRPGGIVC  235 (320)
T ss_pred             HcCC-EEEEEeCCHHHHHHHHhcCCcEEEec---CccHHHHHHHh----CCCceEEEECCChH-HHHHHHHHhccCCEEE
Confidence            9999 58888888999999999999877642   23454544444    56899999999975 8889999999999999


Q ss_pred             EecccCCcccc---cchHHH--hcCcEEEEeecc---CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcC
Q 020928          238 LIGLAKTEMTV---ALTPAA--AREVDVIGIFRY---RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG  309 (319)
Q Consensus       238 ~~g~~~~~~~~---~~~~~~--~~~~~i~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  309 (319)
                      .+|........   ......  .+++.+.++...   ...+.++++++.++.+.+  ...+.+++  +++++|++.+.++
T Consensus       236 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l--~~~~~a~~~~~~~  311 (320)
T cd08243         236 MTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVPQTPLQELFDFVAAGHLDI--PPSKVFTF--DEIVEAHAYMESN  311 (320)
T ss_pred             EEccCCCCcccCCcchhhhhhhccceEEEecchhhhhHHHHHHHHHHHHCCceec--ccccEEcH--HHHHHHHHHHHhC
Confidence            99864322111   111111  456666655432   234778899999998853  35567888  9999999999988


Q ss_pred             CCceEEEE
Q 020928          310 GNAIKVMF  317 (319)
Q Consensus       310 ~~~gkvvi  317 (319)
                      ...+|+++
T Consensus       312 ~~~~kvvv  319 (320)
T cd08243         312 RAFGKVVV  319 (320)
T ss_pred             CCCCcEEe
Confidence            88889886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.98  E-value=1.5e-30  Score=231.41  Aligned_cols=285  Identities=24%  Similarity=0.324  Sum_probs=213.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|+....+..    ....|.++|||++|+|+.+|+++++|++||+|++.....|+               
T Consensus        31 i~v~~~~i~~~d~~~~~~~~----~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~---------------   91 (339)
T cd08249          31 VKVKAVALNPVDWKHQDYGF----IPSYPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNP---------------   91 (339)
T ss_pred             EEEEEEEcCchheeeeeccc----ccCCCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEeccccC---------------
Confidence            57899999999998875532    12457899999999999999999999999999975322111               


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCC----------CCCCeEEEECC-CH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANV----------GPETNVMIMGS-GP  147 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~----------~~~~~vlI~G~-g~  147 (319)
                           ....+|+|++|+.++.+.++++|+++++++++.++ ++.+||+++.. .++          +++++++|+|+ |.
T Consensus        92 -----~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~  166 (339)
T cd08249          92 -----NDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSS  166 (339)
T ss_pred             -----CCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhH
Confidence                 01247999999999999999999999999998876 78899999853 444          78999999985 99


Q ss_pred             HHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHH
Q 020928          148 IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTAL  227 (319)
Q Consensus       148 vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~  227 (319)
                      +|++++++|+..|+ .++++. ++++.+.++++|++.++++.  ..++.+.+..+.   ++++|++||++|++..+...+
T Consensus       167 vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~~g~~~v~~~~--~~~~~~~l~~~~---~~~~d~vl~~~g~~~~~~~~~  239 (339)
T cd08249         167 VGTLAIQLAKLAGY-KVITTA-SPKNFDLVKSLGADAVFDYH--DPDVVEDIRAAT---GGKLRYALDCISTPESAQLCA  239 (339)
T ss_pred             HHHHHHHHHHHcCC-eEEEEE-CcccHHHHHhcCCCEEEECC--CchHHHHHHHhc---CCCeeEEEEeeccchHHHHHH
Confidence            99999999999999 566665 56888888999998887653  345555554443   467999999999855889999


Q ss_pred             HhhcC--CCEEEEecccCCcccccchHHHhcCcEEEEeec---c-----CCCHHHHHHHHHcCCCCCCCceeeeecCChh
Q 020928          228 NATRP--GGKVCLIGLAKTEMTVALTPAAAREVDVIGIFR---Y-----RSTWPLCIEFLRSGKIDVKPLITHRFGFTQK  297 (319)
Q Consensus       228 ~~l~~--~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~---~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  297 (319)
                      +++++  +|+++.++......... .......+.......   .     ...+++++++++++.+.+.+  ...+++.++
T Consensus       240 ~~l~~~~~g~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~  316 (339)
T cd08249         240 EALGRSGGGKLVSLLPVPEETEPR-KGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHP--VRVVEGGLE  316 (339)
T ss_pred             HHHhccCCCEEEEecCCCccccCC-CCceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCCC--ceecCCcHH
Confidence            99999  99999998643321111 111111111111110   1     23466788999999986543  344561139


Q ss_pred             hHHHHHHHHhcCC-CceEEEEeC
Q 020928          298 EIEDAFEISAQGG-NAIKVMFNL  319 (319)
Q Consensus       298 ~~~~a~~~~~~~~-~~gkvvi~~  319 (319)
                      ++++|++.+.+++ ..+|+|+++
T Consensus       317 ~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         317 GVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             HHHHHHHHHHCCCccceEEEEeC
Confidence            9999999999998 899999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08251 polyketide_synthase polyketide synthase

Probab=99.98  E-value=3.3e-30  Score=225.37  Aligned_cols=279  Identities=22%  Similarity=0.358  Sum_probs=218.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++++|+.|+..+.+....  ...+|.++|+|++|+|+++|+++.+|++||+|++..                    
T Consensus        12 v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~--------------------   69 (303)
T cd08251          12 IQVRAFSLNFGDLLCVRGLYPT--MPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGT--------------------   69 (303)
T ss_pred             EEEEEeecChHHHHHHCCCCCC--CCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEec--------------------
Confidence            5789999999999998765321  235688999999999999999999999999998742                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEEC-CCHHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARA  158 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G-~g~vG~~ai~la~~  158 (319)
                            ....|+|++|+.++.+.++++|+++++++++.++ .+.+||++++..+++++++++|+| +|++|++++|+++.
T Consensus        70 ------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~  143 (303)
T cd08251          70 ------GESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARL  143 (303)
T ss_pred             ------CCCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHHhcCCCCCCEEEEecCCcHHHHHHHHHHHH
Confidence                  1236899999999999999999999999998875 778899999888999999999986 79999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ .++++++++++.++++++|++.+++..  ..++...+..+.  .+.++|+++|++++. .....+++++++|+++.
T Consensus       144 ~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~i~~~~--~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~  217 (303)
T cd08251         144 KGA-EIYATASSDDKLEYLKQLGVPHVINYV--EEDFEEEIMRLT--GGRGVDVVINTLSGE-AIQKGLNCLAPGGRYVE  217 (303)
T ss_pred             cCC-EEEEEcCCHHHHHHHHHcCCCEEEeCC--CccHHHHHHHHc--CCCCceEEEECCcHH-HHHHHHHHhccCcEEEE
Confidence            999 688888888899999999998887643  335555555443  356799999999864 78889999999999999


Q ss_pred             ecccCCc--ccccchHHH----hcCcEEEEeecc-----CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHh
Q 020928          239 IGLAKTE--MTVALTPAA----AREVDVIGIFRY-----RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA  307 (319)
Q Consensus       239 ~g~~~~~--~~~~~~~~~----~~~~~i~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~  307 (319)
                      ++..+..  ..+....+.    ++.+.+......     .+.+.++++++.+|.+.  +...+.+++  ++++++++.+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~--~~~~~~~~~~~  293 (303)
T cd08251         218 IAMTALKSAPSVDLSVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELR--PTVSRIFPF--DDIGEAYRYLS  293 (303)
T ss_pred             EeccCCCccCccChhHhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCcc--CCCceEEcH--HHHHHHHHHHH
Confidence            8754321  112222211    112222111111     23467788899999884  335577888  99999999999


Q ss_pred             cCCCceEEEE
Q 020928          308 QGGNAIKVMF  317 (319)
Q Consensus       308 ~~~~~gkvvi  317 (319)
                      ++...+|+++
T Consensus       294 ~~~~~~~iv~  303 (303)
T cd08251         294 DRENIGKVVV  303 (303)
T ss_pred             hCCCcceEeC
Confidence            9888889874

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.98  E-value=2.9e-30  Score=228.49  Aligned_cols=282  Identities=17%  Similarity=0.242  Sum_probs=209.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++|+|++|+....+.  +.....+|.++|||++|+|++.|  +.+|++||+|++.+..                  
T Consensus        32 i~v~~~~i~~~d~~~~~~~--~~~~~~~~~~~g~e~~G~V~~~~--~~~~~~Gd~V~~~~~~------------------   89 (326)
T cd08289          32 IRVAYSSVNYKDGLASIPG--GKIVKRYPFIPGIDLAGTVVESN--DPRFKPGDEVIVTSYD------------------   89 (326)
T ss_pred             EEEEEEecChHHhhhhcCC--ccccCCCCcCcccceeEEEEEcC--CCCCCCCCEEEEcccc------------------
Confidence            5889999999998765421  11123468999999999999954  5789999999975210                  


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh---cCC-CCCCeEEEECC-CHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR---ANV-GPETNVMIMGS-GPIGLVTLL  154 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~---~~~-~~~~~vlI~G~-g~vG~~ai~  154 (319)
                         + +....|+|+||+.++++.++++|+++++++++.++ .+.+||++++.   ..+ .++++|||+|+ |++|++++|
T Consensus        90 ---~-~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~  165 (326)
T cd08289          90 ---L-GVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVS  165 (326)
T ss_pred             ---c-CCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHH
Confidence               0 11247999999999999999999999999998875 56678877743   333 45789999985 999999999


Q ss_pred             HHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCC
Q 020928          155 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGG  234 (319)
Q Consensus       155 la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  234 (319)
                      +|+..|+ .++++++++++.++++++|++.++++..   .....+..+   .+.++|++||++|+. .....+++++++|
T Consensus       166 ~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~---~~~~~d~vld~~g~~-~~~~~~~~l~~~G  237 (326)
T cd08289         166 ILAKLGY-EVVASTGKADAADYLKKLGAKEVIPREE---LQEESIKPL---EKQRWAGAVDPVGGK-TLAYLLSTLQYGG  237 (326)
T ss_pred             HHHHCCC-eEEEEecCHHHHHHHHHcCCCEEEcchh---HHHHHHHhh---ccCCcCEEEECCcHH-HHHHHHHHhhcCC
Confidence            9999999 6888888999999999999988776432   122333333   246799999999985 8889999999999


Q ss_pred             EEEEecccCC-cccccchHHHhcCcEEEEeecc---CCCHHHHHHHHHcCCCC---CCCceeeeecCChhhHHHHHHHHh
Q 020928          235 KVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY---RSTWPLCIEFLRSGKID---VKPLITHRFGFTQKEIEDAFEISA  307 (319)
Q Consensus       235 ~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~a~~~~~  307 (319)
                      +++.+|.... ..+.....++.+++.+.+....   .....++++.+.. .+.   ..+.+.+++++  +++++|++.+.
T Consensus       238 ~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l--~~~~~a~~~~~  314 (326)
T cd08289         238 SVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLAT-DLKPTQLLNEIKQEITL--DELPEALKQIL  314 (326)
T ss_pred             EEEEEeecCCCCCCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHh-hcCccccccccceEeeH--HHHHHHHHHHh
Confidence            9999986432 2233344555788888886432   1223334444332 221   12234678888  99999999999


Q ss_pred             cCCCceEEEEeC
Q 020928          308 QGGNAIKVMFNL  319 (319)
Q Consensus       308 ~~~~~gkvvi~~  319 (319)
                      +++..||+++++
T Consensus       315 ~~~~~gkvvv~~  326 (326)
T cd08289         315 QGRVTGRTVVKL  326 (326)
T ss_pred             cCcccceEEEeC
Confidence            999999999875

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.98  E-value=7.1e-30  Score=225.80  Aligned_cols=280  Identities=18%  Similarity=0.264  Sum_probs=210.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|+..+.|..  .....+|.++|||++|+|+++  +++.|++||+|++...                   
T Consensus        32 v~v~~~~i~~~d~~~~~g~~--~~~~~~~~~~g~e~~G~v~~~--~~~~~~~Gd~V~~~~~-------------------   88 (325)
T cd05280          32 IRVHYSSLNYKDALAATGNG--GVTRNYPHTPGIDAAGTVVSS--DDPRFREGDEVLVTGY-------------------   88 (325)
T ss_pred             EEEEEeecChHHHHHhcCCC--CCCCCCCCccCcccEEEEEEe--CCCCCCCCCEEEEccc-------------------
Confidence            58899999999999987743  112346889999999999999  5678999999997421                   


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh---cCCC-CCCeEEEECC-CHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR---ANVG-PETNVMIMGS-GPIGLVTLL  154 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~---~~~~-~~~~vlI~G~-g~vG~~ai~  154 (319)
                        .. +....|+|+||+.++++.++++|+++++++|+.++ .+.++|++++.   .+++ .+++|+|+|+ |++|++++|
T Consensus        89 --~~-g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~  165 (325)
T cd05280          89 --DL-GMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVA  165 (325)
T ss_pred             --cc-CCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHH
Confidence              00 11236899999999999999999999999999875 56788888754   3445 4579999985 999999999


Q ss_pred             HHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCC
Q 020928          155 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGG  234 (319)
Q Consensus       155 la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  234 (319)
                      +|+..|+ .|++++++++++++++++|++.+++...    ......+..  .+.++|++||++|+. .+...+++++++|
T Consensus       166 ~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~--~~~~~d~vi~~~~~~-~~~~~~~~l~~~g  237 (325)
T cd05280         166 ILAKLGY-TVVALTGKEEQADYLKSLGASEVLDRED----LLDESKKPL--LKARWAGAIDTVGGD-VLANLLKQTKYGG  237 (325)
T ss_pred             HHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEcchh----HHHHHHHHh--cCCCccEEEECCchH-HHHHHHHhhcCCC
Confidence            9999999 5888889999999999999988776421    111121221  245799999999985 8899999999999


Q ss_pred             EEEEecccCC-cccccchHHHhcCcEEEEeecc--C-CC----HHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          235 KVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY--R-ST----WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       235 ~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~--~-~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      +++.+|.... +..+....+..+++.+.+....  . +.    ++.+.+++.++..   +.+..+|++  ++++++++.+
T Consensus       238 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~a~~~~  312 (325)
T cd05280         238 VVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDLL---EIVVREISL--EELPEAIDRL  312 (325)
T ss_pred             EEEEEecCCCCccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCCc---cceeeEecH--HHHHHHHHHH
Confidence            9999986432 2233334444678888775543  1 12    2334444455532   235677888  9999999999


Q ss_pred             hcCCCceEEEEeC
Q 020928          307 AQGGNAIKVMFNL  319 (319)
Q Consensus       307 ~~~~~~gkvvi~~  319 (319)
                      .+++..||+++++
T Consensus       313 ~~~~~~gk~vv~~  325 (325)
T cd05280         313 LAGKHRGRTVVKI  325 (325)
T ss_pred             hcCCcceEEEEeC
Confidence            9999999999874

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.98  E-value=4.6e-30  Score=226.90  Aligned_cols=279  Identities=19%  Similarity=0.293  Sum_probs=210.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|++.+.|...  ...+.|.++|||++|+|+.  .++.+|++||+|++....                  
T Consensus        31 v~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~~~------------------   88 (323)
T TIGR02823        31 IKVAYSSLNYKDALAITGKGG--VVRSYPMIPGIDAAGTVVS--SEDPRFREGDEVIVTGYG------------------   88 (323)
T ss_pred             EEEEEEEcCHHHHHHHcCCCC--CCCCCCccceeeeEEEEEe--cCCCCCCCCCEEEEccCC------------------
Confidence            689999999999998877431  1134588999999999998  567789999999974210                  


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH---hcCCCCCC-eEEEECC-CHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR---RANVGPET-NVMIMGS-GPIGLVTLL  154 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~---~~~~~~~~-~vlI~G~-g~vG~~ai~  154 (319)
                         + +....|++++|+.++.+.++++|+++++++++.++ .+.+|+++++   ++.+++++ +|+|+|+ |++|+++++
T Consensus        89 ---~-~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~  164 (323)
T TIGR02823        89 ---L-GVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVA  164 (323)
T ss_pred             ---C-CCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHH
Confidence               0 11236899999999999999999999999998875 5667776653   35588998 9999985 999999999


Q ss_pred             HHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCC
Q 020928          155 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGG  234 (319)
Q Consensus       155 la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  234 (319)
                      +|+.+|+ .++++++++++.++++++|++.+++...  .+  ..+..+.   ..++|.++|++|+. .....+++++++|
T Consensus       165 la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~--~~~~~~~---~~~~d~vld~~g~~-~~~~~~~~l~~~G  235 (323)
T TIGR02823       165 ILSKLGY-EVVASTGKAEEEDYLKELGASEVIDRED--LS--PPGKPLE---KERWAGAVDTVGGH-TLANVLAQLKYGG  235 (323)
T ss_pred             HHHHcCC-eEEEEeCCHHHHHHHHhcCCcEEEcccc--HH--HHHHHhc---CCCceEEEECccHH-HHHHHHHHhCCCC
Confidence            9999999 5666667777789999999987766421  11  1233232   33599999999976 7888999999999


Q ss_pred             EEEEecccCC-cccccchHHHhcCcEEEEeecc---CC----CHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          235 KVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY---RS----TWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       235 ~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      +++.+|.... ........++.+++++.+....   ..    .+..+.+++..+.+.  +. ...+++  +++++|++.+
T Consensus       236 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l--~~~~~a~~~~  310 (323)
T TIGR02823       236 AVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLE--SI-TREITL--EELPEALEQI  310 (323)
T ss_pred             EEEEEcccCCCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCc--Cc-eeeecH--HHHHHHHHHH
Confidence            9999986432 2222334455778888875432   11    244566666677763  33 457788  9999999999


Q ss_pred             hcCCCceEEEEeC
Q 020928          307 AQGGNAIKVMFNL  319 (319)
Q Consensus       307 ~~~~~~gkvvi~~  319 (319)
                      .+++..+|+++++
T Consensus       311 ~~~~~~~k~vv~~  323 (323)
T TIGR02823       311 LAGQHRGRTVVDV  323 (323)
T ss_pred             hCCCccceEEEeC
Confidence            9999999999874

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.97  E-value=1.3e-29  Score=223.66  Aligned_cols=284  Identities=27%  Similarity=0.389  Sum_probs=222.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++++|++|+....|....  ....|+++|||++|+|+++|+++.+|++||+|++....                  
T Consensus        32 i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~~~------------------   91 (325)
T cd08253          32 VRVHASGVNPVDTYIRAGAYPG--LPPLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTNLG------------------   91 (325)
T ss_pred             EEEEEEecChhHhhhccCCCCC--CCCCCeecccceEEEEEeeCCCCCCCCCCCEEEEeccc------------------
Confidence            5789999999999988764321  23578899999999999999999999999999975210                  


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                           .....|++++|+.++...++++|+++++++++.+. ++.+||+++.. .+++++++++|+| +|++|++++++++
T Consensus        92 -----~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~  166 (325)
T cd08253          92 -----WGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLAR  166 (325)
T ss_pred             -----cCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHH
Confidence                 01136899999999999999999999999988774 78889999865 8899999999998 5999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .++++++++++.+.++++|++.+++..  ..++...+..+.  .+.++|+++|++++. .....+++++++|+++
T Consensus       167 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~--~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v  240 (325)
T cd08253         167 WAGA-RVIATASSAEGAELVRQAGADAVFNYR--AEDLADRILAAT--AGQGVDVIIEVLANV-NLAKDLDVLAPGGRIV  240 (325)
T ss_pred             HcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC--CcCHHHHHHHHc--CCCceEEEEECCchH-HHHHHHHhhCCCCEEE
Confidence            9998 688888888999999999988776642  334444444443  245799999999986 6788899999999999


Q ss_pred             EecccCCcccccchHHHhcCcEEEEeecc-------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC
Q 020928          238 LIGLAKTEMTVALTPAAAREVDVIGIFRY-------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG  310 (319)
Q Consensus       238 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  310 (319)
                      .++.......+....+..++..+.+...+       .+.+..+.+++.++.+.  +.....+++  ++++++++.+.++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~--~~~~~~~~~~~~~~  316 (325)
T cd08253         241 VYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALR--PVIAREYPL--EEAAAAHEAVESGG  316 (325)
T ss_pred             EEeecCCcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCcc--CccccEEcH--HHHHHHHHHHHcCC
Confidence            99864432333444445566666655433       12355666778888774  345567788  99999999999998


Q ss_pred             CceEEEEeC
Q 020928          311 NAIKVMFNL  319 (319)
Q Consensus       311 ~~gkvvi~~  319 (319)
                      ..+|+++++
T Consensus       317 ~~~kvv~~~  325 (325)
T cd08253         317 AIGKVVLDP  325 (325)
T ss_pred             CcceEEEeC
Confidence            999999864

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.97  E-value=1e-29  Score=219.87  Aligned_cols=247  Identities=28%  Similarity=0.404  Sum_probs=197.2

Q ss_pred             cccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCCcccccCCCCCCcceeEEeecCCc
Q 020928           24 FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKL  103 (319)
Q Consensus        24 ~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~  103 (319)
                      ++.++|.++|||++|+|+++|+++++|++||+|++.                               ++|++|+.++.+.
T Consensus        16 ~~~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~-------------------------------~~~~~~~~v~~~~   64 (277)
T cd08255          16 EKLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF-------------------------------GPHAERVVVPANL   64 (277)
T ss_pred             ccCcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-------------------------------CCcceEEEcCHHH
Confidence            456789999999999999999999999999999863                               4689999999999


Q ss_pred             eEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC-C
Q 020928          104 CYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-A  182 (319)
Q Consensus       104 ~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g-~  182 (319)
                      ++++|+++++++++.+.++.+||++++.++++++++++|+|+|++|++++++|+.+|+++|+++++++++.++++++| +
T Consensus        65 ~~~ip~~l~~~~aa~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~  144 (277)
T cd08255          65 LVPLPDGLPPERAALTALAATALNGVRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA  144 (277)
T ss_pred             eeECcCCCCHHHhHHHHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC
Confidence            999999999999887777888999988889999999999999999999999999999955888889999999999998 4


Q ss_pred             CEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEE
Q 020928          183 DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG  262 (319)
Q Consensus       183 ~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~  262 (319)
                      +.++.+..          ..  ..+.++|++||+++........+++++++|+++.+|............+..+.+.+.+
T Consensus       145 ~~~~~~~~----------~~--~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~  212 (277)
T cd08255         145 DPVAADTA----------DE--IGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRLPIRS  212 (277)
T ss_pred             ccccccch----------hh--hcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCccccHHHHHhccCeEEe
Confidence            44433211          01  1256799999999877688899999999999999986443311111234445555554


Q ss_pred             eecc-------------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcC-CCceEEEE
Q 020928          263 IFRY-------------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG-GNAIKVMF  317 (319)
Q Consensus       263 ~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi  317 (319)
                      ....             .+.++++++++.++.+.  +...+.+++  +++++|++.++++ ....|+++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~--~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         213 SQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLE--ALITHRVPF--EDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             ecccccccccccccccccccHHHHHHHHHcCCcc--ccccCccCH--HHHHHHHHHHHcCCccceeeeC
Confidence            4321             25688999999999874  345566778  9999999999877 56677764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=1.4e-29  Score=222.84  Aligned_cols=276  Identities=27%  Similarity=0.342  Sum_probs=218.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|+....+..    +..+|.++|||++|+|+.+|+++.+|++||+|++..                    
T Consensus        31 i~v~~~~i~~~d~~~~~~~~----~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~--------------------   86 (320)
T cd05286          31 VRNTAIGVNFIDTYFRSGLY----PLPLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAG--------------------   86 (320)
T ss_pred             EEEEEeecCHHHHHHhcCCC----CCCCCccCCcceeEEEEEECCCCCCCCCCCEEEEec--------------------
Confidence            57899999999998877643    224578999999999999999999999999998631                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHH-hcCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACR-RANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                              ..|++++|+.++.+.++++|+++++++++.+ ....++++++. ..+++++++|+|+| +|++|++++++|+
T Consensus        87 --------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~  158 (320)
T cd05286          87 --------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAK  158 (320)
T ss_pred             --------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHH
Confidence                    2589999999999999999999999988876 46778888885 48899999999998 6999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      .+|+ .+++++.++++.++++++|++.++..  ...++...+..+.  .+.++|.+|||+++. .....+++++++|+++
T Consensus       159 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~--~~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~v  232 (320)
T cd05286         159 ALGA-TVIGTVSSEEKAELARAAGADHVINY--RDEDFVERVREIT--GGRGVDVVYDGVGKD-TFEGSLDSLRPRGTLV  232 (320)
T ss_pred             HcCC-EEEEEcCCHHHHHHHHHCCCCEEEeC--CchhHHHHHHHHc--CCCCeeEEEECCCcH-hHHHHHHhhccCcEEE
Confidence            9999 67888888899999999998877653  2234445554443  356799999999985 8889999999999999


Q ss_pred             EecccCCc-ccccchHHHhcCcEEEEeecc---------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHh
Q 020928          238 LIGLAKTE-MTVALTPAAAREVDVIGIFRY---------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA  307 (319)
Q Consensus       238 ~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~  307 (319)
                      .+|..... ..+....+..+++.+.+....         .+.+.++++++.++.+.+.  ..+.|++  ++++++++.+.
T Consensus       233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~--~~~~~a~~~~~  308 (320)
T cd05286         233 SFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVE--IGKRYPL--ADAAQAHRDLE  308 (320)
T ss_pred             EEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCc--ccceEcH--HHHHHHHHHHH
Confidence            99864332 122333333667776543221         2235568888989888543  4566788  99999999999


Q ss_pred             cCCCceEEEEe
Q 020928          308 QGGNAIKVMFN  318 (319)
Q Consensus       308 ~~~~~gkvvi~  318 (319)
                      ++...+|++++
T Consensus       309 ~~~~~~~vv~~  319 (320)
T cd05286         309 SRKTTGKLLLI  319 (320)
T ss_pred             cCCCCceEEEe
Confidence            98888999885

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.97  E-value=1.2e-29  Score=225.42  Aligned_cols=279  Identities=18%  Similarity=0.284  Sum_probs=217.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++++|++|+....+...   ..+.|.++|||++|+|+++|+++.+|++||+|++..                    
T Consensus        35 v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~--------------------   91 (336)
T cd08252          35 VRVEAVSVNPVDTKVRAGGAP---VPGQPKILGWDASGVVEAVGSEVTLFKVGDEVYYAG--------------------   91 (336)
T ss_pred             EEEEEEEcCHHHHHHHcCCCC---CCCCCcccccceEEEEEEcCCCCCCCCCCCEEEEcC--------------------
Confidence            578999999999988765321   124678999999999999999999999999998631                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCC-----CCeEEEEC-CCHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGP-----ETNVMIMG-SGPIGLVT  152 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~-----~~~vlI~G-~g~vG~~a  152 (319)
                           .....|+|++|+.++...++++|+++++++++.++ .+.++|+++ +.+.+.+     +++|+|+| +|++|+++
T Consensus        92 -----~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~  166 (336)
T cd08252          92 -----DITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIA  166 (336)
T ss_pred             -----CCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHH
Confidence                 01136899999999999999999999999988775 567888887 4477777     99999998 69999999


Q ss_pred             HHHHHHcC-CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhc
Q 020928          153 LLAARAFG-APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       153 i~la~~~g-~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  231 (319)
                      +|+|+.+| + .++++++++++.++++++|++.+++..   .++...+...   .+.++|++||++|+......++++++
T Consensus       167 ~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~i~~~---~~~~~d~vl~~~~~~~~~~~~~~~l~  239 (336)
T cd08252         167 IQLAKQLTGL-TVIATASRPESIAWVKELGADHVINHH---QDLAEQLEAL---GIEPVDYIFCLTDTDQHWDAMAELIA  239 (336)
T ss_pred             HHHHHHcCCc-EEEEEcCChhhHHHHHhcCCcEEEeCC---ccHHHHHHhh---CCCCCCEEEEccCcHHHHHHHHHHhc
Confidence            99999999 7 788888888899999999998877643   1444444322   34579999999997668899999999


Q ss_pred             CCCEEEEecccCCcccccchHHHhcCcEEEEeecc-------------CCCHHHHHHHHHcCCCCCCCc-eeeeecCChh
Q 020928          232 PGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-------------RSTWPLCIEFLRSGKIDVKPL-ITHRFGFTQK  297 (319)
Q Consensus       232 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~  297 (319)
                      ++|+++.+|...  ..+....+..+++.+.+....             .+.+.++++++.+|.+.+.+. ....+++  +
T Consensus       240 ~~g~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~  315 (336)
T cd08252         240 PQGHICLIVDPQ--EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINA--E  315 (336)
T ss_pred             CCCEEEEecCCC--CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCH--H
Confidence            999999998542  233333444566666653321             123667889999998853321 1133566  9


Q ss_pred             hHHHHHHHHhcCCCceEEEEe
Q 020928          298 EIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       298 ~~~~a~~~~~~~~~~gkvvi~  318 (319)
                      ++++|++.+.++...+|++++
T Consensus       316 ~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         316 NLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             HHHHHHHHHHcCCccceEEeC
Confidence            999999999999899999874

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.97  E-value=2.7e-29  Score=224.55  Aligned_cols=288  Identities=19%  Similarity=0.246  Sum_probs=209.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCC-CCCCCCEEEEccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVK-SLEVGDRVALEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~-~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++++|++|+..+.+..  ......|.++|+|++|+|+++|++++ +|++||+|++....+                
T Consensus        33 I~v~~~~~~~~d~~~~~~~~--~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~----------------   94 (352)
T cd08247          33 VKVHAAALNPVDLKLYNSYT--FHFKVKEKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIYPHP----------------   94 (352)
T ss_pred             EEEEEEecChHhHHHhcccc--cccccCCCccCceeEEEEEEeCcccccCCCCCCEEEEeecCC----------------
Confidence            58999999999998775311  11112478999999999999999998 899999999753211                


Q ss_pred             CcccccCCCCCCcceeEEeecCC----ceEeCCCCCChhhhhccc-hhHHHHHHHHh-c-CCCCCCeEEEECC-CHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAK----LCYKLPDNVSLEEGAMCE-PLSVGVHACRR-A-NVGPETNVMIMGS-GPIGLV  151 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~----~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~-~~~~~~~vlI~G~-g~vG~~  151 (319)
                             ....|+|++|+.++..    .++++|+++++++++.++ .+.+||+++.. . ++++|++++|+|+ |.+|++
T Consensus        95 -------~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~  167 (352)
T cd08247          95 -------YGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRF  167 (352)
T ss_pred             -------CCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHH
Confidence                   1136899999999987    789999999999999875 67889999866 4 6999999999985 899999


Q ss_pred             HHHHHHHcCC-CeEEEecCChhHHHHHHHcCCCEeeccCCCCc-chhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHh
Q 020928          152 TLLAARAFGA-PRIIITDVDVQRLSIARNLGADETAKVSTDIE-DVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA  229 (319)
Q Consensus       152 ai~la~~~g~-~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~  229 (319)
                      ++|+|+.+|. +.++++.+ +++.++++++|++.++++..... .+...+.... ..+.++|++|||+|+......++++
T Consensus       168 ~~~~a~~~~~~~~v~~~~~-~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~~g~~~~~~~~~~~  245 (352)
T cd08247         168 AIQLAKNHYNIGTVVGTCS-SRSAELNKKLGADHFIDYDAHSGVKLLKPVLENV-KGQGKFDLILDCVGGYDLFPHINSI  245 (352)
T ss_pred             HHHHHHhcCCcceEEEEeC-hhHHHHHHHhCCCEEEecCCCcccchHHHHHHhh-cCCCCceEEEECCCCHHHHHHHHHH
Confidence            9999998754 35666654 55556778899988876533210 0323322221 1256899999999986578889999


Q ss_pred             hc---CCCEEEEec-ccCCccc-----------c----cchHHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCce
Q 020928          230 TR---PGGKVCLIG-LAKTEMT-----------V----ALTPAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLI  288 (319)
Q Consensus       230 l~---~~G~~v~~g-~~~~~~~-----------~----~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~  288 (319)
                      ++   ++|+++.++ ....+..           .    ......+...++......  .+.+.++++++.++.+.  +..
T Consensus       246 l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~  323 (352)
T cd08247         246 LKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGKVK--PPI  323 (352)
T ss_pred             hCccCCCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecCCHHHHHHHHHHHhCCCeE--eee
Confidence            99   999999874 2211100           0    011222334443332211  23577889999999884  445


Q ss_pred             eeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          289 THRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       289 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      .+++++  +++++|++.+++++..||+++++
T Consensus       324 ~~~~~l--~~~~~a~~~~~~~~~~gkvvi~~  352 (352)
T cd08247         324 DSVYPF--EDYKEAFERLKSNRAKGKVVIKV  352 (352)
T ss_pred             ccEecH--HHHHHHHHHHHcCCCCCcEEEeC
Confidence            677888  99999999999998899999874

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.97  E-value=3.7e-29  Score=220.38  Aligned_cols=277  Identities=27%  Similarity=0.376  Sum_probs=219.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|+.|+....+...  .....|.++|||++|+|+++|+++.++++||+|++.                     
T Consensus        32 v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~---------------------   88 (323)
T cd05276          32 IRVAAAGVNRADLLQRQGLYP--PPPGASDILGLEVAGVVVAVGPGVTGWKVGDRVCAL---------------------   88 (323)
T ss_pred             EEEEEeecCHHHHHHhCCCCC--CCCCCCCcccceeEEEEEeeCCCCCCCCCCCEEEEe---------------------
Confidence            588999999999988765431  123467899999999999999999999999999863                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                             ..+|+|++|+.++.+.++++|+++++++++.+ .++.++|+++.. ..++++++++|+| +|++|++++++++
T Consensus        89 -------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~  161 (323)
T cd05276          89 -------LAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAK  161 (323)
T ss_pred             -------cCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHH
Confidence                   12589999999999999999999999888876 478889999754 7899999999998 5999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .++++++++++.+.++++|.+.+++.  ...++...+.++.  .+.++|++||+.|+. .....+++++++|+++
T Consensus       162 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~--~~~~~d~vi~~~g~~-~~~~~~~~~~~~g~~i  235 (323)
T cd05276         162 ALGA-RVIATAGSEEKLEACRALGADVAINY--RTEDFAEEVKEAT--GGRGVDVILDMVGGD-YLARNLRALAPDGRLV  235 (323)
T ss_pred             HcCC-EEEEEcCCHHHHHHHHHcCCCEEEeC--CchhHHHHHHHHh--CCCCeEEEEECCchH-HHHHHHHhhccCCEEE
Confidence            9999 58888888888888888998776653  2234444554443  246799999999986 5788899999999999


Q ss_pred             EecccCC-cccccchHHHhcCcEEEEeeccC-----------CCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHH
Q 020928          238 LIGLAKT-EMTVALTPAAAREVDVIGIFRYR-----------STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI  305 (319)
Q Consensus       238 ~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~  305 (319)
                      .++.... ........++.+++.+.++....           +.+.++++++.++++.  +...+.|++  ++++++++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~a~~~  311 (323)
T cd05276         236 LIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIR--PVIDKVFPL--EEAAEAHRR  311 (323)
T ss_pred             EEecCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCcc--CCcceEEcH--HHHHHHHHH
Confidence            9985432 22333444456788887765431           1246678888888884  445677888  999999999


Q ss_pred             HhcCCCceEEEE
Q 020928          306 SAQGGNAIKVMF  317 (319)
Q Consensus       306 ~~~~~~~gkvvi  317 (319)
                      +.++...+|+++
T Consensus       312 ~~~~~~~~kvv~  323 (323)
T cd05276         312 MESNEHIGKIVL  323 (323)
T ss_pred             HHhCCCcceEeC
Confidence            998888888874

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>smart00829 PKS_ER Enoylreductase

Probab=99.97  E-value=2.4e-29  Score=218.06  Aligned_cols=271  Identities=25%  Similarity=0.383  Sum_probs=212.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|++...+..      ..|.++|||++|+|+.+|+++++|++||+|++.                     
T Consensus         2 i~v~~~~i~~~d~~~~~g~~------~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~---------------------   54 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLL------PGEAVLGGECAGVVTRVGPGVTGLAVGDRVMGL---------------------   54 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCC------CCCCCCCceeEEEEEeeCCCCcCCCCCCEEEEE---------------------
Confidence            68999999999999887632      236889999999999999999999999999863                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                              ..|+|+||+.++.+.++++|+++++++++.+. ...++|+++ +...++++++|+|+| +|.+|++++++|+
T Consensus        55 --------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~  126 (288)
T smart00829       55 --------APGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQ  126 (288)
T ss_pred             --------cCCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHH
Confidence                    25899999999999999999999999998875 678899888 558899999999998 6999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCC--CEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGA--DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK  235 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~  235 (319)
                      ..|+ .++++++++++.+.++++|+  +.++++  ...++...+....  .+.++|.++|++++ ......+++++++|+
T Consensus       127 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~--~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~  200 (288)
T smart00829      127 HLGA-EVFATAGSPEKRDFLRELGIPDDHIFSS--RDLSFADEILRAT--GGRGVDVVLNSLAG-EFLDASLRCLAPGGR  200 (288)
T ss_pred             HcCC-EEEEEeCCHHHHHHHHHcCCChhheeeC--CCccHHHHHHHHh--CCCCcEEEEeCCCH-HHHHHHHHhccCCcE
Confidence            9999 68888888999999999997  566553  2334545544433  24579999999996 478889999999999


Q ss_pred             EEEecccCCc--ccccchHHHhcCcEEEEeecc---------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHH
Q 020928          236 VCLIGLAKTE--MTVALTPAAAREVDVIGIFRY---------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE  304 (319)
Q Consensus       236 ~v~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~  304 (319)
                      ++.++.....  ....... ..+++.+.+....         .+.+.++++++.++++.+  ...+.|++  ++++++++
T Consensus       201 ~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~  275 (288)
T smart00829      201 FVEIGKRDIRDNSQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRP--LPVTVFPI--SDVEDAFR  275 (288)
T ss_pred             EEEEcCcCCccccccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccC--cCceEEcH--HHHHHHHH
Confidence            9999854311  1222222 2334444443211         224667888888898853  24466788  99999999


Q ss_pred             HHhcCCCceEEEE
Q 020928          305 ISAQGGNAIKVMF  317 (319)
Q Consensus       305 ~~~~~~~~gkvvi  317 (319)
                      .+..+...+|+++
T Consensus       276 ~~~~~~~~~~ivv  288 (288)
T smart00829      276 YMQQGKHIGKVVL  288 (288)
T ss_pred             HHhcCCCcceEeC
Confidence            9998877788774

Enoylreductase in Polyketide synthases.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.97  E-value=1.9e-29  Score=223.45  Aligned_cols=273  Identities=18%  Similarity=0.165  Sum_probs=210.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|.....+......+...+.++|+|++|+|+++|++  +|++||+|++                      
T Consensus        37 Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~----------------------   92 (329)
T cd05288          37 VRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP--DFKVGDLVSG----------------------   92 (329)
T ss_pred             EEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC--CCCCCCEEec----------------------
Confidence            6899999999887655543211111223568999999999999964  7999999985                      


Q ss_pred             cccccCCCCCCcceeEEeecC-CceEeCCCCCC--hhhhhc-c-chhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPA-KLCYKLPDNVS--LEEGAM-C-EPLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTL  153 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~-~~~~~iP~~~~--~~~aa~-~-~~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai  153 (319)
                               .++|++|+.++. +.++++|++++  +++++. + .++.+||+++.. +++.++++|||+| +|++|++++
T Consensus        93 ---------~~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~  163 (329)
T cd05288          93 ---------FLGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVG  163 (329)
T ss_pred             ---------ccceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHH
Confidence                     258999999999 99999999985  444433 4 578899999854 7899999999998 699999999


Q ss_pred             HHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcC
Q 020928          154 LAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRP  232 (319)
Q Consensus       154 ~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  232 (319)
                      |+|+..|+ .++++++++++.+.+++ +|++.++++.  ..++...+.++.   +.++|++||++|+. .+...++++++
T Consensus       164 ~~a~~~G~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~v~~~~---~~~~d~vi~~~g~~-~~~~~~~~l~~  236 (329)
T cd05288         164 QIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINYK--TPDLAEALKEAA---PDGIDVYFDNVGGE-ILDAALTLLNK  236 (329)
T ss_pred             HHHHHcCC-EEEEEeCCHHHHHHHHhhcCCceEEecC--ChhHHHHHHHhc---cCCceEEEEcchHH-HHHHHHHhcCC
Confidence            99999999 68888888999999988 9998877653  234555554443   35799999999975 88899999999


Q ss_pred             CCEEEEecccCCccc------ccchHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHH
Q 020928          233 GGKVCLIGLAKTEMT------VALTPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIE  300 (319)
Q Consensus       233 ~G~~v~~g~~~~~~~------~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  300 (319)
                      +|+++.+|.......      ........+++.+.+....      .+.+.++++++.++.+++.+  ...+++  ++++
T Consensus       237 ~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~~~~~l--~~~~  312 (329)
T cd05288         237 GGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRE--DVVEGL--ENAP  312 (329)
T ss_pred             CceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccc--cccccH--HHHH
Confidence            999999985432211      1233455678888776543      23467788999999986543  344677  9999


Q ss_pred             HHHHHHhcCCCceEEEE
Q 020928          301 DAFEISAQGGNAIKVMF  317 (319)
Q Consensus       301 ~a~~~~~~~~~~gkvvi  317 (319)
                      ++++.+.++...+|+++
T Consensus       313 ~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         313 EAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             HHHHHHhcCCCccceeC
Confidence            99999998888888874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.97  E-value=4.5e-29  Score=223.00  Aligned_cols=279  Identities=25%  Similarity=0.354  Sum_probs=208.6

Q ss_pred             CCcceEeeccCCcccccccccc-------c-----cccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCc
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCA-------N-----FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS   68 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~-------~-----~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~   68 (319)
                      |||.++++|++|+.+..|...+       .     ...+.|.++|||++|+|+.+|+++.+|++||||++.+.       
T Consensus        34 v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~v~~vG~~v~~~~~Gd~V~~~~~-------  106 (350)
T cd08248          34 IKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVP-------  106 (350)
T ss_pred             EEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecceeEEEEEecCCCcccCCCCCEEEEecC-------
Confidence            5899999999999988763210       0     02356889999999999999999999999999997421       


Q ss_pred             cccCCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCC----CCCeEEE
Q 020928           69 LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVG----PETNVMI  142 (319)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~----~~~~vlI  142 (319)
                                        ....|+|++|+.++.+.++++|+++++++++.++ .+.++|+++.. ..+.    ++++++|
T Consensus       107 ------------------~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI  168 (350)
T cd08248         107 ------------------PWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLI  168 (350)
T ss_pred             ------------------CCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEE
Confidence                              1136899999999999999999999999988775 77889998854 5564    4999999


Q ss_pred             EC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChH
Q 020928          143 MG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDK  221 (319)
Q Consensus       143 ~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~  221 (319)
                      +| +|++|++++++|+..|+ .++++.++ ++.+.++++|.+.+++..  ..++...   +..  ..++|++||++|+. 
T Consensus       169 ~g~~g~ig~~~~~~a~~~G~-~v~~~~~~-~~~~~~~~~g~~~~~~~~--~~~~~~~---l~~--~~~vd~vi~~~g~~-  238 (350)
T cd08248         169 LGGSGGVGTFAIQLLKAWGA-HVTTTCST-DAIPLVKSLGADDVIDYN--NEDFEEE---LTE--RGKFDVILDTVGGD-  238 (350)
T ss_pred             ECCCChHHHHHHHHHHHCCC-eEEEEeCc-chHHHHHHhCCceEEECC--ChhHHHH---HHh--cCCCCEEEECCChH-
Confidence            98 69999999999999999 46666554 577888999987776642  2233333   322  35799999999987 


Q ss_pred             HHHHHHHhhcCCCEEEEecccCCcc----cc----cchHHHhcCcE---------EE-Ee-eccCCCHHHHHHHHHcCCC
Q 020928          222 TMSTALNATRPGGKVCLIGLAKTEM----TV----ALTPAAAREVD---------VI-GI-FRYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       222 ~~~~~~~~l~~~G~~v~~g~~~~~~----~~----~~~~~~~~~~~---------i~-~~-~~~~~~~~~~~~~~~~g~~  282 (319)
                      ....++++++++|+++.++......    ..    ......+....         +. +. ....+.+.++++++.++.+
T Consensus       239 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  318 (350)
T cd08248         239 TEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKI  318 (350)
T ss_pred             HHHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCE
Confidence            8889999999999999998532110    11    00111111111         11 11 1113458889999999988


Q ss_pred             CCCCceeeeecCChhhHHHHHHHHhcCCCceEEEEe
Q 020928          283 DVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  318 (319)
                      .  +...+.|++  ++++++++.+.++...+|++++
T Consensus       319 ~--~~~~~~~~~--~~~~~a~~~~~~~~~~~~vv~~  350 (350)
T cd08248         319 K--PVIDKVFPF--EEVPEAYEKVESGHARGKTVIK  350 (350)
T ss_pred             e--cccceeecH--HHHHHHHHHHhcCCCceEEEeC
Confidence            4  345677888  9999999999988888898874

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=9.1e-29  Score=218.48  Aligned_cols=279  Identities=27%  Similarity=0.345  Sum_probs=216.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+....+...  .....|.++|||++|+|+.+|+++.+|++||+|++...           |       
T Consensus        32 v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~-----------~-------   91 (326)
T cd08272          32 VRVHASGVNPLDTKIRRGGAA--ARPPLPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAG-----------G-------   91 (326)
T ss_pred             EEEEEEecCHHHHHHhCCCCC--CCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC-----------C-------
Confidence            578999999999988766432  12345889999999999999999999999999996421           0       


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                           .....|+|++|+.++...++++|+++++++++.++ .+.+||+++ +..+++++++++|+| +|.+|++++++|+
T Consensus        92 -----~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~  166 (326)
T cd08272          92 -----LGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAK  166 (326)
T ss_pred             -----cCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHH
Confidence                 01236899999999999999999999999888775 678889887 558999999999998 6999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .+++++++ ++.++++++|++.+++..  .. +...+..+.  .+.++|.++|++++. .....+++++++|+++
T Consensus       167 ~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~--~~-~~~~~~~~~--~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v  238 (326)
T cd08272         167 AAGA-RVYATASS-EKAAFARSLGADPIIYYR--ET-VVEYVAEHT--GGRGFDVVFDTVGGE-TLDASFEAVALYGRVV  238 (326)
T ss_pred             HcCC-EEEEEech-HHHHHHHHcCCCEEEecc--hh-HHHHHHHhc--CCCCCcEEEECCChH-HHHHHHHHhccCCEEE
Confidence            9999 56777677 888888889987776532  22 444554443  356799999999985 7788999999999999


Q ss_pred             EecccCCcccccchHHHhcCcEEEEeecc------------CCCHHHHHHHHHcCCCCCCCcee-eeecCChhhHHHHHH
Q 020928          238 LIGLAKTEMTVALTPAAAREVDVIGIFRY------------RSTWPLCIEFLRSGKIDVKPLIT-HRFGFTQKEIEDAFE  304 (319)
Q Consensus       238 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~a~~  304 (319)
                      .++... .  ........+++.+.+....            .+.+..+++++.++.+.  +.+. +.+++  ++++++++
T Consensus       239 ~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~--~~~~~~~~  311 (326)
T cd08272         239 SILGGA-T--HDLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLR--PLLDPRTFPL--EEAAAAHA  311 (326)
T ss_pred             EEecCC-c--cchhhHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCcc--cccccceecH--HHHHHHHH
Confidence            987543 1  1222233566666655421            23466788888888874  3333 66788  99999999


Q ss_pred             HHhcCCCceEEEEeC
Q 020928          305 ISAQGGNAIKVMFNL  319 (319)
Q Consensus       305 ~~~~~~~~gkvvi~~  319 (319)
                      .+.++...+|+++++
T Consensus       312 ~~~~~~~~~~vv~~~  326 (326)
T cd08272         312 RLESGSARGKIVIDV  326 (326)
T ss_pred             HHHcCCcccEEEEEC
Confidence            999888889999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=7e-29  Score=220.05  Aligned_cols=272  Identities=25%  Similarity=0.327  Sum_probs=208.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+.++.+.....  ..+|.++|||++|+|+.+|+++++|++||+|++..                    
T Consensus        32 i~v~~~~i~~~d~~~~~g~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~--------------------   89 (331)
T cd08273          32 VKVEASGVSFADVQMRRGLYPDQ--PPLPFTPGYDLVGRVDALGSGVTGFEVGDRVAALT--------------------   89 (331)
T ss_pred             EEEEEEecCHHHHHHhCCCCCCC--CCCCcccccceEEEEEEeCCCCccCCCCCEEEEeC--------------------
Confidence            57899999999999887653211  24688999999999999999999999999999741                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                              ..|+|++|+.++.+.++++|+++++++++.++ ++.+||+++.. .+++++++++|+| +|++|++++++|+
T Consensus        90 --------~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~  161 (331)
T cd08273          90 --------RVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELAL  161 (331)
T ss_pred             --------CCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence                    24899999999999999999999999988764 78889999855 7899999999998 5999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .++.+.. +++.++++++|+.. ++.  ...++...  .+   .++++|++||++|+. .....+++++++|+++
T Consensus       162 ~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~--~~~~~~~~--~~---~~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~v  230 (331)
T cd08273         162 LAGA-EVYGTAS-ERNHAALRELGATP-IDY--RTKDWLPA--ML---TPGGVDVVFDGVGGE-SYEESYAALAPGGTLV  230 (331)
T ss_pred             HcCC-EEEEEeC-HHHHHHHHHcCCeE-EcC--CCcchhhh--hc---cCCCceEEEECCchH-HHHHHHHHhcCCCEEE
Confidence            9999 5777766 88888989999654 232  22233222  12   235799999999987 5888999999999999


Q ss_pred             EecccCCccc--ccc--------------hHHHhcCcEEEEeecc--------CCCHHHHHHHHHcCCCCCCCceeeeec
Q 020928          238 LIGLAKTEMT--VAL--------------TPAAAREVDVIGIFRY--------RSTWPLCIEFLRSGKIDVKPLITHRFG  293 (319)
Q Consensus       238 ~~g~~~~~~~--~~~--------------~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~  293 (319)
                      .+|.......  ...              .....++.........        .+.+.+++++++++.+.  +...++++
T Consensus       231 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~--~~~~~~~~  308 (331)
T cd08273         231 CYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIR--PKIAKRLP  308 (331)
T ss_pred             EEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCcc--CCcceEEc
Confidence            9986432211  110              0011122222222211        24577899999999884  44567788


Q ss_pred             CChhhHHHHHHHHhcCCCceEEEE
Q 020928          294 FTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       294 ~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      +  ++++++++.+.++...||+|+
T Consensus       309 ~--~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         309 L--SEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             H--HHHHHHHHHHHcCCCcceEEe
Confidence            8  999999999998888899886

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.97  E-value=1.7e-28  Score=216.64  Aligned_cols=279  Identities=24%  Similarity=0.334  Sum_probs=219.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|+.|+....+....  +..+|.++|||++|+|+.+|+++.+|++||+|++.                     
T Consensus        32 i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~---------------------   88 (325)
T TIGR02824        32 IRVAAAGVNRPDLLQRAGKYPP--PPGASDILGLEVAGEVVAVGEGVSRWKVGDRVCAL---------------------   88 (325)
T ss_pred             EEEEEEecCHHHHHHhcCCCCC--CCCCCCCccceeEEEEEEeCCCCCCCCCCCEEEEc---------------------
Confidence            5789999999999887653321  12357899999999999999999999999999863                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHH-HhcCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                             ..+|++++|+.++...++++|+++++.+++.+ .++.++|+++ +...++++++++|+| +|++|++++++++
T Consensus        89 -------~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~  161 (325)
T TIGR02824        89 -------VAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAK  161 (325)
T ss_pred             -------cCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHH
Confidence                   12489999999999999999999999888766 4788899886 458899999999998 5999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .++++.+++++.+.++++|.+.+++.  ...++...+....  .+.++|+++|++|+. .....+++++++|+++
T Consensus       162 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~--~~~~~d~~i~~~~~~-~~~~~~~~l~~~g~~v  235 (325)
T TIGR02824       162 AFGA-RVFTTAGSDEKCAACEALGADIAINY--REEDFVEVVKAET--GGKGVDVILDIVGGS-YLNRNIKALALDGRIV  235 (325)
T ss_pred             HcCC-EEEEEeCCHHHHHHHHHcCCcEEEec--CchhHHHHHHHHc--CCCCeEEEEECCchH-HHHHHHHhhccCcEEE
Confidence            9999 67778788888888888998766553  2234444444433  245799999999975 7888999999999999


Q ss_pred             EecccCC-cccccchHHHhcCcEEEEeeccC-----------CCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHH
Q 020928          238 LIGLAKT-EMTVALTPAAAREVDVIGIFRYR-----------STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI  305 (319)
Q Consensus       238 ~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~  305 (319)
                      .++.... ...+....+..+++.+.+.....           +.+.+++++++++.+.  +..++.+++  ++++++++.
T Consensus       236 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~--~~~~~~~~~  311 (325)
T TIGR02824       236 QIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVR--PVIDKVFPL--EDAAQAHAL  311 (325)
T ss_pred             EEecCCCCcCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCccc--CccccEEeH--HHHHHHHHH
Confidence            9986432 12334444557888888765431           1245677888888874  345677788  999999999


Q ss_pred             HhcCCCceEEEEeC
Q 020928          306 SAQGGNAIKVMFNL  319 (319)
Q Consensus       306 ~~~~~~~gkvvi~~  319 (319)
                      +.++...+|+++++
T Consensus       312 ~~~~~~~~~~v~~~  325 (325)
T TIGR02824       312 MESGDHIGKIVLTV  325 (325)
T ss_pred             HHhCCCcceEEEeC
Confidence            99888889999875

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.97  E-value=1e-28  Score=214.44  Aligned_cols=272  Identities=24%  Similarity=0.326  Sum_probs=213.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|++...|..     ..+|.++|||++|+|+++|+++.+|++||+|++.                     
T Consensus         5 i~v~~~~~~~~d~~~~~g~~-----~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~---------------------   58 (293)
T cd05195           5 VEVKAAGLNFRDVLVALGLL-----PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGL---------------------   58 (293)
T ss_pred             EEEEEEecCHHHHHHHhCCC-----CCCCCccceeeeEEEEeecCCccCCCCCCEEEEE---------------------
Confidence            58899999999999887642     2458899999999999999999999999999864                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                              ..|+|+||+.++.+.++++|+++++++++.+ .+..++|+++.. .+++++++++|+| +|++|++++|+|+
T Consensus        59 --------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~  130 (293)
T cd05195          59 --------APGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQ  130 (293)
T ss_pred             --------ecCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHH
Confidence                    2589999999999999999999999998877 477889988844 8899999999997 6999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcC--CCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLG--ADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK  235 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~  235 (319)
                      ..|+ +++++.+++++.+.+++++  ++.+++.  ...++...+.++.  .+.++|+++|++|+. .....+++++++|+
T Consensus       131 ~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~  204 (293)
T cd05195         131 HLGA-EVFATVGSEEKREFLRELGGPVDHIFSS--RDLSFADGILRAT--GGRGVDVVLNSLSGE-LLRASWRCLAPFGR  204 (293)
T ss_pred             HcCC-EEEEEeCCHHHHHHHHHhCCCcceEeec--CchhHHHHHHHHh--CCCCceEEEeCCCch-HHHHHHHhcccCce
Confidence            9999 6888888888888888887  5666553  2334445554443  356799999999987 88999999999999


Q ss_pred             EEEecccCCc--ccccchHHHhcCcEEEEeecc----------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHH
Q 020928          236 VCLIGLAKTE--MTVALTPAAAREVDVIGIFRY----------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAF  303 (319)
Q Consensus       236 ~v~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~  303 (319)
                      ++.++.....  ..+.... ..+++.+......          .+.+.++++++.++.+.  +.....+.+  +++.+++
T Consensus       205 ~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~a~  279 (293)
T cd05195         205 FVEIGKRDILSNSKLGMRP-FLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLK--PLPPTVVPS--ASEIDAF  279 (293)
T ss_pred             EEEeeccccccCCccchhh-hccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcc--cCCCeeech--hhHHHHH
Confidence            9999854321  1122222 2233444332211          23467788899999884  445566777  9999999


Q ss_pred             HHHhcCCCceEEEE
Q 020928          304 EISAQGGNAIKVMF  317 (319)
Q Consensus       304 ~~~~~~~~~gkvvi  317 (319)
                      +.+.++...+|+++
T Consensus       280 ~~~~~~~~~~~ivv  293 (293)
T cd05195         280 RLMQSGKHIGKVVL  293 (293)
T ss_pred             HHHhcCCCCceecC
Confidence            99998888888874

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.97  E-value=3.6e-28  Score=214.87  Aligned_cols=279  Identities=21%  Similarity=0.266  Sum_probs=210.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+.+..|...  ....+|.++|||++|+|+.  ++++++++||+|++....                  
T Consensus        32 v~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~~~------------------   89 (324)
T cd08288          32 VEVHYSTLNYKDGLAITGKGG--IVRTFPLVPGIDLAGTVVE--SSSPRFKPGDRVVLTGWG------------------   89 (324)
T ss_pred             EEEEEEecCHHHHHHhcCCcc--ccCCCCCccccceEEEEEe--CCCCCCCCCCEEEECCcc------------------
Confidence            578999999999988766421  1124578899999999999  777889999999974200                  


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH---hcCCC-CCCeEEEECC-CHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR---RANVG-PETNVMIMGS-GPIGLVTLL  154 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~---~~~~~-~~~~vlI~G~-g~vG~~ai~  154 (319)
                         . .....|+|++|+.++.+.++++|+++++++++.++ .+.+++.+++   ..+.. ++++++|+|+ |++|++++|
T Consensus        90 ---~-~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~  165 (324)
T cd08288          90 ---V-GERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVA  165 (324)
T ss_pred             ---C-CCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHH
Confidence               0 01136899999999999999999999999998775 5666766653   44555 6789999985 999999999


Q ss_pred             HHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCC
Q 020928          155 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGG  234 (319)
Q Consensus       155 la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  234 (319)
                      +|+.+|+ .++++++++++.++++++|++.++++..    ....+..+   ...++|.+||++++. .....+..++.+|
T Consensus       166 ~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~---~~~~~~~~~d~~~~~-~~~~~~~~~~~~g  236 (324)
T cd08288         166 LLARLGY-EVVASTGRPEEADYLRSLGASEIIDRAE----LSEPGRPL---QKERWAGAVDTVGGH-TLANVLAQTRYGG  236 (324)
T ss_pred             HHHHCCC-eEEEEeCCHHHHHHHHhcCCCEEEEcch----hhHhhhhh---ccCcccEEEECCcHH-HHHHHHHHhcCCC
Confidence            9999999 5777778889999999999988877532    12233322   234689999999974 6678888899999


Q ss_pred             EEEEecccCC-cccccchHHHhcCcEEEEeecc-------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          235 KVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY-------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       235 ~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      +++.+|.... ........+..+++.+.+....       .+.+..+.+++.++.+.  +. .+.+++  +++++|++.+
T Consensus       237 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i-~~~~~~--~~~~~a~~~~  311 (324)
T cd08288         237 AVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLE--AL-TREIPL--ADVPDAAEAI  311 (324)
T ss_pred             EEEEEEecCCCCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCcc--cc-ceeecH--HHHHHHHHHH
Confidence            9999986421 1223334444678888876432       12355677777788773  32 577888  9999999999


Q ss_pred             hcCCCceEEEEeC
Q 020928          307 AQGGNAIKVMFNL  319 (319)
Q Consensus       307 ~~~~~~gkvvi~~  319 (319)
                      ++++..+|+++++
T Consensus       312 ~~~~~~~~vvv~~  324 (324)
T cd08288         312 LAGQVRGRVVVDV  324 (324)
T ss_pred             hcCCccCeEEEeC
Confidence            9999999999874

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=1.7e-27  Score=210.43  Aligned_cols=283  Identities=27%  Similarity=0.378  Sum_probs=218.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|+.|+....+.....  ..+|.++|||++|+|+.+|+++.+|++||+|++.+..                  
T Consensus        32 i~v~~~~~~~~d~~~~~~~~~~~--~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~------------------   91 (328)
T cd08268          32 IRVEAIGLNRADAMFRRGAYIEP--PPLPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIPAA------------------   91 (328)
T ss_pred             EEEEEEecChHHhheeccccCCC--CCCCCCCCcceEEEEEeeCCCCCcCCCCCEEEecccc------------------
Confidence            57899999999998887643221  3458899999999999999999999999999875210                  


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHH-hcCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACR-RANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                           .....|++++|+.++.+.++++|+++++++++.+ .++.++|+++. ...+.++++++|+| +|++|++++++++
T Consensus        92 -----~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~  166 (328)
T cd08268          92 -----DLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIAN  166 (328)
T ss_pred             -----ccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHH
Confidence                 1123689999999999999999999999888776 47889999985 48889999999998 5999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .++.+++++++.+.++++|.+.+++..  ..++...+....  .+.++|++++++++. .....+++++++|+++
T Consensus       167 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~--~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v  240 (328)
T cd08268         167 AAGA-TVIATTRTSEKRDALLALGAAHVIVTD--EEDLVAEVLRIT--GGKGVDVVFDPVGGP-QFAKLADALAPGGTLV  240 (328)
T ss_pred             HcCC-EEEEEcCCHHHHHHHHHcCCCEEEecC--CccHHHHHHHHh--CCCCceEEEECCchH-hHHHHHHhhccCCEEE
Confidence            9998 677778888888888889987776543  234444444333  245799999999985 7888999999999999


Q ss_pred             EecccCCc-ccccchHHHhcCcEEEEeecc---------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHh
Q 020928          238 LIGLAKTE-MTVALTPAAAREVDVIGIFRY---------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA  307 (319)
Q Consensus       238 ~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~  307 (319)
                      .+|..... ..+.....+.+++.+.+....         ...+..+.+++.++.+.  +.....|++  +++.++++.+.
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~  316 (328)
T cd08268         241 VYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALK--PVVDRVFPF--DDIVEAHRYLE  316 (328)
T ss_pred             EEEeCCCCCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCc--CCcccEEcH--HHHHHHHHHHH
Confidence            99854321 223333345677777665432         12345556667777774  335566778  99999999999


Q ss_pred             cCCCceEEEEe
Q 020928          308 QGGNAIKVMFN  318 (319)
Q Consensus       308 ~~~~~gkvvi~  318 (319)
                      ++...+|++++
T Consensus       317 ~~~~~~~vv~~  327 (328)
T cd08268         317 SGQQIGKIVVT  327 (328)
T ss_pred             cCCCCceEEEe
Confidence            88888899986

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=5.9e-28  Score=212.82  Aligned_cols=278  Identities=29%  Similarity=0.482  Sum_probs=220.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++++|++|+....+....  ....|.++|||++|+|+.+|+++.++++||+|++..                    
T Consensus        32 i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~--------------------   89 (323)
T cd08241          32 IRVEAAGVNFPDLLMIQGKYQV--KPPLPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALT--------------------   89 (323)
T ss_pred             EEEEEEecCHHHHHHHcCCCCC--CCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEec--------------------
Confidence            5788999999999887664311  123477899999999999999999999999999741                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHH-hcCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACR-RANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                              ..|++++|+.++.+.++++|++++..+++.+ .++.+|++++. ..+++++++++|+|+ |++|++++++|+
T Consensus        90 --------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~  161 (323)
T cd08241          90 --------GQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAK  161 (323)
T ss_pred             --------CCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHH
Confidence                    2589999999999999999999998888766 57888998885 588999999999985 999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .+++++.++++.+.++++|++..+..  ...++...+..+.  .+.++|.++|++|+. ....++++++++|+++
T Consensus       162 ~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~i~~~~--~~~~~d~v~~~~g~~-~~~~~~~~~~~~g~~v  235 (323)
T cd08241         162 ALGA-RVIAAASSEEKLALARALGADHVIDY--RDPDLRERVKALT--GGRGVDVVYDPVGGD-VFEASLRSLAWGGRLL  235 (323)
T ss_pred             HhCC-EEEEEeCCHHHHHHHHHcCCceeeec--CCccHHHHHHHHc--CCCCcEEEEECccHH-HHHHHHHhhccCCEEE
Confidence            9999 58888888888999999998776653  2335555555443  345799999999974 7888999999999999


Q ss_pred             EecccCCccc-ccchHHHhcCcEEEEeecc----------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          238 LIGLAKTEMT-VALTPAAAREVDVIGIFRY----------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       238 ~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      .++....... +.......+++.+.+....          .+.+.++++++.++.+.  +.....|++  ++++++++.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~  311 (323)
T cd08241         236 VIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIR--PHVSAVFPL--EQAAEALRAL  311 (323)
T ss_pred             EEccCCCCcCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcc--cccceEEcH--HHHHHHHHHH
Confidence            9986433222 2233345677777776532          13467788999999874  445677888  9999999999


Q ss_pred             hcCCCceEEEEe
Q 020928          307 AQGGNAIKVMFN  318 (319)
Q Consensus       307 ~~~~~~gkvvi~  318 (319)
                      .++...+|++++
T Consensus       312 ~~~~~~~~vvv~  323 (323)
T cd08241         312 ADRKATGKVVLT  323 (323)
T ss_pred             HhCCCCCcEEeC
Confidence            988888898864

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=3.9e-28  Score=213.92  Aligned_cols=279  Identities=27%  Similarity=0.333  Sum_probs=205.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||+.++++|++|+....|..........|.++|||++|+|+++|+++.+|++||+|++...                   
T Consensus        31 v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-------------------   91 (319)
T cd08267          31 VKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLP-------------------   91 (319)
T ss_pred             EEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEecc-------------------
Confidence            5788999999999988764311112345778999999999999999999999999987421                   


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                            .+..|+|++|+.++.+.++++|+++++++++.+. .+.+||++++. .+++++++++|+|+ |++|++++++|+
T Consensus        92 ------~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~  165 (319)
T cd08267          92 ------PKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAK  165 (319)
T ss_pred             ------CCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence                  0236899999999999999999999998888774 78889999866 56999999999985 999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKV  236 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~  236 (319)
                      ..|+ .+++++++ ++.+.++++|.+.+++...  .++.   .  ....+.++|+++||+|+. ......+..++++|++
T Consensus       166 ~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~--~~~~---~--~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~  236 (319)
T cd08267         166 ALGA-HVTGVCST-RNAELVRSLGADEVIDYTT--EDFV---A--LTAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRY  236 (319)
T ss_pred             HcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC--CCcc---h--hccCCCCCcEEEECCCchHHHHHHhhhccCCCCEE
Confidence            9999 57776654 7788889999877765432  2222   1  122356799999999953 2233334449999999


Q ss_pred             EEecccCCcccccc-----h-HHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC
Q 020928          237 CLIGLAKTEMTVAL-----T-PAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG  310 (319)
Q Consensus       237 v~~g~~~~~~~~~~-----~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  310 (319)
                      +.+|..........     . ....+.+.........+.+.++++++.++.+.  +...++|++  ++++++++.+.+..
T Consensus       237 i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~--~~i~~a~~~~~~~~  312 (319)
T cd08267         237 VSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVEEGKLK--PVIDSVYPL--EDAPEAYRRLKSGR  312 (319)
T ss_pred             EEeccccccccccccccchhhccccceEEEEEecCCHHHHHHHHHHHHCCCee--eeeeeEEcH--HHHHHHHHHHhcCC
Confidence            99986432211111     1 11122222222111245688899999999874  446677888  99999999999888


Q ss_pred             CceEEEE
Q 020928          311 NAIKVMF  317 (319)
Q Consensus       311 ~~gkvvi  317 (319)
                      ..+|+++
T Consensus       313 ~~~~vvv  319 (319)
T cd08267         313 ARGKVVI  319 (319)
T ss_pred             CCCcEeC
Confidence            8888874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=5.4e-28  Score=213.62  Aligned_cols=280  Identities=23%  Similarity=0.290  Sum_probs=212.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+..+.+...   ....|.++|||++|+|+.+|+++.++++||+|++...                   
T Consensus        32 v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~-------------------   89 (325)
T cd08271          32 VKVHAAGLNPVDWKVIAWGPP---AWSYPHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHAS-------------------   89 (325)
T ss_pred             EEEEEEecCHHHHHHhcCCCC---CCCCCcccccceEEEEEEeCCCCCcCCCCCEEEeccC-------------------
Confidence            578999999999988765431   1134789999999999999999999999999997421                   


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHh-cCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRR-ANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                            ....|+|++|+.++...++++|+++++.+++.+ ..+.++++++.. ++++++++++|+|+ |++|++++++|+
T Consensus        90 ------~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~  163 (325)
T cd08271          90 ------LARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAK  163 (325)
T ss_pred             ------CCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHH
Confidence                  113689999999999999999999999988876 478889999855 88999999999995 899999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .++++. ++++.+.++++|++.+++.  ...++...+..+.  .+.++|.+++++++. .....+++++++|+++
T Consensus       164 ~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~--~~~~~d~vi~~~~~~-~~~~~~~~l~~~G~~v  236 (325)
T cd08271         164 RAGL-RVITTC-SKRNFEYVKSLGADHVIDY--NDEDVCERIKEIT--GGRGVDAVLDTVGGE-TAAALAPTLAFNGHLV  236 (325)
T ss_pred             HcCC-EEEEEE-cHHHHHHHHHcCCcEEecC--CCccHHHHHHHHc--CCCCCcEEEECCCcH-hHHHHHHhhccCCEEE
Confidence            9999 455555 6677788888998777653  3334444454443  356799999999986 5667899999999999


Q ss_pred             EecccCCcc--cccchHHHhcCcEEEEeecc---------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          238 LIGLAKTEM--TVALTPAAAREVDVIGIFRY---------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       238 ~~g~~~~~~--~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      .++......  ........++.+++......         .+.+.++++++.++.+.  +...+.+++  +++.++++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~--~~~~~a~~~~  312 (325)
T cd08271         237 CIQGRPDASPDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLE--PLVIEVLPF--EQLPEALRAL  312 (325)
T ss_pred             EEcCCCCCcchhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCee--eccceEEcH--HHHHHHHHHH
Confidence            887432211  11112233344444333221         12356788889999884  334566788  9999999999


Q ss_pred             hcCCCceEEEEeC
Q 020928          307 AQGGNAIKVMFNL  319 (319)
Q Consensus       307 ~~~~~~gkvvi~~  319 (319)
                      .++...+|+++++
T Consensus       313 ~~~~~~~kiv~~~  325 (325)
T cd08271         313 KDRHTRGKIVVTI  325 (325)
T ss_pred             HcCCccceEEEEC
Confidence            9888889999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=2.7e-27  Score=210.17  Aligned_cols=277  Identities=23%  Similarity=0.344  Sum_probs=213.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|+|++|+....+....  ....|.++|||++|+|+.+|+++.+|++||+|++..                    
T Consensus        31 i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~--------------------   88 (337)
T cd08275          31 VRVEACGLNFADLMARQGLYDS--APKPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLT--------------------   88 (337)
T ss_pred             EEEEEEecCHHHHHHHCCCCCC--CCCCCCCCcceeEEEEEEECCCCcCCCCCCEEEEec--------------------
Confidence            5789999999999987764311  124578999999999999999999999999999741                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH-hcCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR-RANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~-~~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                              ..|+|++|+.++.+.++++|+++++++++.++ ++.++|+++. ..+++++++|+|+|+ |.+|++++++|+
T Consensus        89 --------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~  160 (337)
T cd08275          89 --------RFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCK  160 (337)
T ss_pred             --------CCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHH
Confidence                    25899999999999999999999998888775 7888999974 588999999999985 999999999999


Q ss_pred             HcCCCeEEEec-CChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEE
Q 020928          158 AFGAPRIIITD-VDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV  236 (319)
Q Consensus       158 ~~g~~~vv~v~-~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~  236 (319)
                      .. . .+.+++ ..+++.++++++|++.+++.  ...++...+....   +.++|+++|++|+. .....+++++++|++
T Consensus       161 ~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~---~~~~d~v~~~~g~~-~~~~~~~~l~~~g~~  232 (337)
T cd08275         161 TV-P-NVTVVGTASASKHEALKENGVTHVIDY--RTQDYVEEVKKIS---PEGVDIVLDALGGE-DTRKSYDLLKPMGRL  232 (337)
T ss_pred             Hc-c-CcEEEEeCCHHHHHHHHHcCCcEEeeC--CCCcHHHHHHHHh---CCCceEEEECCcHH-HHHHHHHhhccCcEE
Confidence            98 2 223332 34557788888998776653  3345555555443   45799999999986 778899999999999


Q ss_pred             EEecccCCc--ccc---------------cchHHHhcCcEEEEeecc---------CCCHHHHHHHHHcCCCCCCCceee
Q 020928          237 CLIGLAKTE--MTV---------------ALTPAAAREVDVIGIFRY---------RSTWPLCIEFLRSGKIDVKPLITH  290 (319)
Q Consensus       237 v~~g~~~~~--~~~---------------~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~  290 (319)
                      +.+|.....  ...               .......+++.+.++...         ...+.++++++.++.+.  +....
T Consensus       233 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  310 (337)
T cd08275         233 VVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIK--PKIDS  310 (337)
T ss_pred             EEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCC--Cceee
Confidence            999854321  111               112345667777665431         12356788888899874  44567


Q ss_pred             eecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          291 RFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       291 ~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      .|++  ++++++++.+.++...+|+++++
T Consensus       311 ~~~~--~~~~~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         311 VFPF--EEVGEAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             EEcH--HHHHHHHHHHHcCCCcceEEEeC
Confidence            7888  99999999999988889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.96  E-value=9.4e-28  Score=210.35  Aligned_cols=273  Identities=26%  Similarity=0.360  Sum_probs=209.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++++|++|+....+........+.|.++|||++|+|+.+|++++++++||+|++.+.                   
T Consensus        32 v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~~-------------------   92 (309)
T cd05289          32 VKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTP-------------------   92 (309)
T ss_pred             EEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCCCCCCCEEEEccC-------------------
Confidence            5789999999999988764321112345889999999999999999999999999997421                   


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                            ....|+|++|+.++...++++|+++++++++.++ .+.++++++.. ..++++++++|+|+ |.+|++++++++
T Consensus        93 ------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~  166 (309)
T cd05289          93 ------FTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAK  166 (309)
T ss_pred             ------CCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHH
Confidence                  0125899999999999999999999998888775 67788988866 56999999999985 999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ .++++..++ +.++++++|.+.++....  .++..      ...+.++|.+||++++. .....+++++++|+++
T Consensus       167 ~~g~-~v~~~~~~~-~~~~~~~~g~~~~~~~~~--~~~~~------~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v  235 (309)
T cd05289         167 ARGA-RVIATASAA-NADFLRSLGADEVIDYTK--GDFER------AAAPGGVDAVLDTVGGE-TLARSLALVKPGGRLV  235 (309)
T ss_pred             HcCC-EEEEEecch-hHHHHHHcCCCEEEeCCC--Cchhh------ccCCCCceEEEECCchH-HHHHHHHHHhcCcEEE
Confidence            9999 566666666 788888899877665332  22221      12356799999999987 8889999999999999


Q ss_pred             EecccCCcccccchHHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEE
Q 020928          238 LIGLAKTEMTVALTPAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKV  315 (319)
Q Consensus       238 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  315 (319)
                      .++.......    ....++..+......  .+.+.+++++++++.+.  +..++.|++  ++++++++.+.++...+|+
T Consensus       236 ~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~a~~~~~~~~~~~kv  307 (309)
T cd05289         236 SIAGPPPAEQ----AAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLR--PVVDRVFPL--EDAAEAHERLESGHARGKV  307 (309)
T ss_pred             EEcCCCcchh----hhhhccceEEEEEecccHHHHHHHHHHHHCCCEE--EeeccEEcH--HHHHHHHHHHHhCCCCCcE
Confidence            9986433211    222334444333221  35688899999999873  446677888  9999999999988777888


Q ss_pred             EE
Q 020928          316 MF  317 (319)
Q Consensus       316 vi  317 (319)
                      ++
T Consensus       308 v~  309 (309)
T cd05289         308 VL  309 (309)
T ss_pred             eC
Confidence            74

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.95  E-value=1.1e-27  Score=224.78  Aligned_cols=273  Identities=20%  Similarity=0.277  Sum_probs=215.5

Q ss_pred             cceEeeccCCccccccccccc-cc---cCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCC
Q 020928            3 KAVTAYCMQNVVYDQTMRCAN-FI---VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC   78 (319)
Q Consensus         3 v~~~~i~~~D~~~~~~~~~~~-~~---~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~   78 (319)
                      |-|+.||..|+-...|+.... .|   .....++|.||+|+          .+-|.||+++.                  
T Consensus      1451 VYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRvM~mv------------------ 1502 (2376)
T KOG1202|consen 1451 VYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRVMGMV------------------ 1502 (2376)
T ss_pred             EEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEEEEee------------------
Confidence            568899999998888766332 11   34567899999996          56799999864                  


Q ss_pred             CCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEE-CCCHHHHHHHHH
Q 020928           79 PEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIM-GSGPIGLVTLLA  155 (319)
Q Consensus        79 ~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~-G~g~vG~~ai~l  155 (319)
                                .--++++.+.++.+++|.+|.+++.++|++.| .+.|+||+| .++..++|+++||+ |+|++|++||.+
T Consensus      1503 ----------pAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIai 1572 (2376)
T KOG1202|consen 1503 ----------PAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAI 1572 (2376)
T ss_pred             ----------ehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHH
Confidence                      24578889999999999999999999999998 688999998 67999999999999 689999999999


Q ss_pred             HHHcCCCeEEEecCChhHHHHHHHcC--CCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCC
Q 020928          156 ARAFGAPRIIITDVDVQRLSIARNLG--ADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG  233 (319)
Q Consensus       156 a~~~g~~~vv~v~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~  233 (319)
                      |.+.|+ .|+.+..++++++++.+..  ..+...-++.+.+|..-+  ++.+.|+|+|+|++.... +-++..++||+.+
T Consensus      1573 ALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdtsFEq~v--l~~T~GrGVdlVLNSLae-EkLQASiRCLa~~ 1648 (2376)
T KOG1202|consen 1573 ALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANSRDTSFEQHV--LWHTKGRGVDLVLNSLAE-EKLQASIRCLALH 1648 (2376)
T ss_pred             HHHcCC-EEEEecCcHHHHHHHHHhchhhhhhcccccccccHHHHH--HHHhcCCCeeeehhhhhH-HHHHHHHHHHHhc
Confidence            999999 7999999999999988733  122111234455665444  345579999999999985 4899999999999


Q ss_pred             CEEEEecccCCcccccc-hHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCC--CCCceeeeecCChhhHHHHHH
Q 020928          234 GKVCLIGLAKTEMTVAL-TPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKID--VKPLITHRFGFTQKEIEDAFE  304 (319)
Q Consensus       234 G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~a~~  304 (319)
                      |||..+|-.+...+-+. .....++..+.|.+..      .+.+.++..++++|...  ..|+.+.+|+-  .++++||+
T Consensus      1649 GRFLEIGKfDLSqNspLGMavfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~--~qvE~AFR 1726 (2376)
T KOG1202|consen 1649 GRFLEIGKFDLSQNSPLGMAVFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHG--QQVEDAFR 1726 (2376)
T ss_pred             CeeeeecceecccCCcchhhhhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccH--HHHHHHHH
Confidence            99999985443333333 3355677888776643      44577888888887653  47777787777  99999999


Q ss_pred             HHhcCCCceEEEEeC
Q 020928          305 ISAQGGNAIKVMFNL  319 (319)
Q Consensus       305 ~~~~~~~~gkvvi~~  319 (319)
                      +|.++++.||+|+++
T Consensus      1727 fMasGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1727 FMASGKHIGKVVIKV 1741 (2376)
T ss_pred             HHhccCccceEEEEE
Confidence            999999999999974

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=178.68  Aligned_cols=249  Identities=16%  Similarity=0.202  Sum_probs=196.1

Q ss_pred             CCcccc----cceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCCcccccCCCCCCcceeEEeecCC-
Q 020928           28 KPMVIG----HECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK-  102 (319)
Q Consensus        28 ~p~i~G----~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~-  102 (319)
                      .|+.+|    ..++|.|++.  +.++|++||.|.+.                               -+|.||..+++. 
T Consensus        67 ~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g~-------------------------------~gWeeysii~~~~  113 (343)
T KOG1196|consen   67 PPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWGI-------------------------------VGWEEYSVITPND  113 (343)
T ss_pred             CcccCCcEecCCceEEEEec--CCCCCCcCceEEEe-------------------------------ccceEEEEecCcc
Confidence            455555    3678999996  45789999999974                               289999999875 


Q ss_pred             -ceEeCCC--CCChhhhh--ccchhHHHHHHHH-hcCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH
Q 020928          103 -LCYKLPD--NVSLEEGA--MCEPLSVGVHACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS  175 (319)
Q Consensus       103 -~~~~iP~--~~~~~~aa--~~~~~~~a~~~l~-~~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~  175 (319)
                       ..+++|.  ++++-...  +-++..|||-.+. ....++|++++|-| +|++|+.+.|+|+..|+ .||.+..++++.+
T Consensus       114 ~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~  192 (343)
T KOG1196|consen  114 LEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVD  192 (343)
T ss_pred             hhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhh
Confidence             3455554  34444443  3368889998884 58899999999997 69999999999999999 8999999999999


Q ss_pred             HHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC---Ccccc---
Q 020928          176 IARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK---TEMTV---  248 (319)
Q Consensus       176 ~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~---~~~~~---  248 (319)
                      +++. +|.+.+++|.. +.+..+.+++.   ...++|+.||++|+. ..+..+..|+..||++.||+..   .+.+.   
T Consensus       193 ll~~~~G~d~afNYK~-e~~~~~aL~r~---~P~GIDiYfeNVGG~-~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~  267 (343)
T KOG1196|consen  193 LLKTKFGFDDAFNYKE-ESDLSAALKRC---FPEGIDIYFENVGGK-MLDAVLLNMNLHGRIAVCGMISQYNLENPEGLH  267 (343)
T ss_pred             hhHhccCCccceeccC-ccCHHHHHHHh---CCCcceEEEeccCcH-HHHHHHHhhhhccceEeeeeehhccccCCcccc
Confidence            9887 79999999854 33666666664   367899999999997 8999999999999999999633   12222   


Q ss_pred             cchHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          249 ALTPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       249 ~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      .....++|++++.++...      .+.+..+..++++|+++....+.  -++  +..++||.-|-+++..||.++++
T Consensus       268 ~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi~--~Gl--en~P~A~vglf~GkNvGKqiv~v  340 (343)
T KOG1196|consen  268 NLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDIA--DGL--ENGPSALVGLFHGKNVGKQLVKV  340 (343)
T ss_pred             chhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhHH--HHH--hccHHHHHHHhccCcccceEEEe
Confidence            224467888999887543      55678899999999997655443  256  99999999999999999999874

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.87  E-value=1.1e-22  Score=150.39  Aligned_cols=104  Identities=32%  Similarity=0.612  Sum_probs=91.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++++++.  .....+.|.++|||++|+|+++|+++++|++||||++.+..+|+.|.+|..+.+.+|+.
T Consensus         6 Vkv~a~gic~~D~~~~~g~--~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~   83 (109)
T PF08240_consen    6 VKVRAAGICGSDLHIREGG--PPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNLCPN   83 (109)
T ss_dssp             EEEEEEEE-HHHHHHHTTS--SSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGGTTT
T ss_pred             EEEEEeeeCHHHHHHHhhc--cccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCccccCCC
Confidence            6899999999999999984  23346889999999999999999999999999999998888999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKL  107 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~i  107 (319)
                      ...++.. .+|+|+||+.++++.++|+
T Consensus        84 ~~~~g~~-~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   84 PEVLGLG-LDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             BEETTTS-STCSSBSEEEEEGGGEEEE
T ss_pred             CCEeEcC-CCCcccCeEEEehHHEEEC
Confidence            8877664 7999999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.73  E-value=9.7e-17  Score=122.54  Aligned_cols=128  Identities=28%  Similarity=0.569  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHH
Q 020928          147 PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTA  226 (319)
Q Consensus       147 ~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~  226 (319)
                      ++|++++|+|+..|+ +|++++++++++++++++|++.+++++.  .++.+.++++..  +.++|+||||+|++..++.+
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~--~~~~~~i~~~~~--~~~~d~vid~~g~~~~~~~~   75 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD--DDFVEQIRELTG--GRGVDVVIDCVGSGDTLQEA   75 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT--SSHHHHHHHHTT--TSSEEEEEESSSSHHHHHHH
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc--cccccccccccc--cccceEEEEecCcHHHHHHH
Confidence            589999999999995 8999999999999999999999988643  457777777753  46899999999987899999


Q ss_pred             HHhhcCCCEEEEecccC-CcccccchHHHhcCcEEEEeeccC-CCHHHHHHHHHc
Q 020928          227 LNATRPGGKVCLIGLAK-TEMTVALTPAAAREVDVIGIFRYR-STWPLCIEFLRS  279 (319)
Q Consensus       227 ~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~  279 (319)
                      +++++++|+++.+|... ...+++...++++++++.+++... ++++++++++++
T Consensus        76 ~~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~la~  130 (130)
T PF00107_consen   76 IKLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQEALQLLAQ  130 (130)
T ss_dssp             HHHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHHHHH-
T ss_pred             HHHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHHHhcC
Confidence            99999999999999877 667888889999999999999884 778888888753

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.46  E-value=1.9e-12  Score=118.65  Aligned_cols=155  Identities=16%  Similarity=0.230  Sum_probs=114.6

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEe-eccCCCC-----------cchhHHHHH
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVSTDI-----------EDVDTDVGK  201 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v-~~~~~~~-----------~~~~~~i~~  201 (319)
                      ..++++|+|+|+|.+|+++++.|+.+|+ .|++++.++++++.++++|++.+ ++.....           +++.+...+
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            5689999999999999999999999999 79999999999999999999854 4321110           122222222


Q ss_pred             hhhhcCCCccEEEEccCChH-----H-HHHHHHhhcCCCEEEEeccc-CCc--ccccchHHHh-cCcEEEEeeccCCCHH
Q 020928          202 IQNAMGSGIDVSFDCVGFDK-----T-MSTALNATRPGGKVCLIGLA-KTE--MTVALTPAAA-REVDVIGIFRYRSTWP  271 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~~-----~-~~~~~~~l~~~G~~v~~g~~-~~~--~~~~~~~~~~-~~~~i~~~~~~~~~~~  271 (319)
                      +......++|++|+|++.+.     . .+.+++.++++|+++.++.. +..  .+.+...+.. +++++.|.+..+..+.
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~p  320 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRLP  320 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhHH
Confidence            21112257999999999742     4 48999999999999999874 332  3344445554 8999999887765555


Q ss_pred             -HHHHHHHcCCCCCCCcee
Q 020928          272 -LCIEFLRSGKIDVKPLIT  289 (319)
Q Consensus       272 -~~~~~~~~g~~~~~~~~~  289 (319)
                       ++.+++.++.+++.+.++
T Consensus       321 ~~As~lla~~~i~l~~lIt  339 (509)
T PRK09424        321 TQSSQLYGTNLVNLLKLLC  339 (509)
T ss_pred             HHHHHHHHhCCccHHHHhc
Confidence             599999999886555544

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.44  E-value=4.3e-12  Score=113.49  Aligned_cols=172  Identities=19%  Similarity=0.296  Sum_probs=132.9

Q ss_pred             HHHHHHh-cC-CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHh
Q 020928          125 GVHACRR-AN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       125 a~~~l~~-~~-~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      ++.++.+ .+ .-+|++|+|+|+|.+|+.+++.++.+|+ +|++++.++.+.+.++++|++.+ +.       .+.   +
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~~-------~e~---v  255 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-TM-------EEA---V  255 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-cH-------HHH---H
Confidence            3555533 33 4689999999999999999999999999 68889999999999999997432 11       111   1


Q ss_pred             hhhcCCCccEEEEccCChHHHHHH-HHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEeeccCC--CHH--HHHHHH
Q 020928          203 QNAMGSGIDVSFDCVGFDKTMSTA-LNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRS--TWP--LCIEFL  277 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~--~~~~~~  277 (319)
                           .++|+||+|.|.+..+... ++.++++|+++.+|..  +..++...+..+++++.+......  .++  ..+.++
T Consensus       256 -----~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--~~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LL  328 (413)
T cd00401         256 -----KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--DVEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILL  328 (413)
T ss_pred             -----cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--CCccCHHHHHhhccEEEEccCCcceEEcCCcchhhhh
Confidence                 2579999999988777764 9999999999999964  346777778888999998887632  345  689999


Q ss_pred             HcCCC-CCCCceeee-----ecCChh-hHHHHHHHHhcCCC-ceEEEE
Q 020928          278 RSGKI-DVKPLITHR-----FGFTQK-EIEDAFEISAQGGN-AIKVMF  317 (319)
Q Consensus       278 ~~g~~-~~~~~~~~~-----~~~~~~-~~~~a~~~~~~~~~-~gkvvi  317 (319)
                      .+|.+ ++.+.+.+.     ++|  + ++.++++.+.+... ..|+++
T Consensus       329 a~Grlvnl~~~~gH~~~vmd~sf--~~q~l~a~~l~~~~~~~~~kV~~  374 (413)
T cd00401         329 AEGRLVNLGCATGHPSFVMSNSF--TNQVLAQIELWTNRDKYEVGVYF  374 (413)
T ss_pred             hCcCCCCCcccCCCccceechhH--HHHHHHHHHHHhcCCcCCCcEEE
Confidence            99999 777666665     556  8 99999998887643 346654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.34  E-value=4.1e-13  Score=101.96  Aligned_cols=119  Identities=29%  Similarity=0.389  Sum_probs=77.9

Q ss_pred             cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC--ChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcC
Q 020928          180 LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG--FDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAARE  257 (319)
Q Consensus       180 ~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g--~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  257 (319)
                      ||++++++|..  +++         ....++|+|||++|  ++..+..++++| ++|+++.++.   .............
T Consensus         1 LGAd~vidy~~--~~~---------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~---~~~~~~~~~~~~~   65 (127)
T PF13602_consen    1 LGADEVIDYRD--TDF---------AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG---DLPSFARRLKGRS   65 (127)
T ss_dssp             CT-SEEEETTC--SHH---------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S---HHHHHHHHHHCHH
T ss_pred             CCcCEEecCCC--ccc---------cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC---cccchhhhhcccc
Confidence            68999999863  333         13678999999999  654446777788 9999998873   0000011011223


Q ss_pred             cEEEEeec------cCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          258 VDVIGIFR------YRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       258 ~~i~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      ++......      ..+.++++.+++++|++  +|.+.++|++  +++.+|++.++++...||+|+
T Consensus        66 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l--~~~i~~~f~l--~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   66 IRYSFLFSVDPNAIRAEALEELAELVAEGKL--KPPIDRVFPL--EEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             CEEECCC-H--HHHHHHHHHHHHHHHHTTSS-----EEEEEEG--GGHHHHHHHHHCT--SSEEEE
T ss_pred             eEEEEEEecCCCchHHHHHHHHHHHHHCCCe--EEeeccEECH--HHHHHHHHHHHhCCCCCeEeC
Confidence            33333331      13458999999999999  7778889999  999999999999999999996

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.64  E-value=3.9e-07  Score=83.80  Aligned_cols=105  Identities=17%  Similarity=0.256  Sum_probs=79.9

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCC-------------CcchhHHHHH
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD-------------IEDVDTDVGK  201 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~-------------~~~~~~~i~~  201 (319)
                      .++++++|+|+|.+|++++++|+.+|+ .|++++.++++.+.++++|++.+.. +..             .+++.+...+
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v-~~~e~g~~~~gYa~~~s~~~~~~~~~  239 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLEL-DFKEEGGSGDGYAKVMSEEFIAAEME  239 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEec-cccccccccccceeecCHHHHHHHHH
Confidence            467999999999999999999999999 6889999999999999999876322 211             1233333333


Q ss_pred             hhhhcCCCccEEEEcc---CChH---HHHHHHHhhcCCCEEEEecc
Q 020928          202 IQNAMGSGIDVSFDCV---GFDK---TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~---g~~~---~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +..+...++|++|+|+   |.+.   .....++.|++++.+++++.
T Consensus       240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence            3332346799999999   6543   56778999999999999874

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.64  E-value=5.5e-07  Score=77.58  Aligned_cols=172  Identities=17%  Similarity=0.257  Sum_probs=104.8

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      .+.++++++||.+|+|. |..++++++..|.. .|++++.+++..+.+++.    +...+....   .+    +..+.. 
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~---~d----~~~l~~-  142 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL---GE----IEALPV-  142 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE---cc----hhhCCC-
Confidence            46789999999999988 98888888887764 699999999988888763    322221110   11    222211 


Q ss_pred             cCCCccEEEEcc------CChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEe-eccCCCHHHHHHHHH
Q 020928          206 MGSGIDVSFDCV------GFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGI-FRYRSTWPLCIEFLR  278 (319)
Q Consensus       206 ~~~~~d~v~d~~------g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~  278 (319)
                      ....+|+|+...      .....+..+.+.|+++|+++..+..... ..+  ....+...+.+. ........++.++++
T Consensus       143 ~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~l~  219 (272)
T PRK11873        143 ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG-ELP--EEIRNDAELYAGCVAGALQEEEYLAMLA  219 (272)
T ss_pred             CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC-CCC--HHHHHhHHHHhccccCCCCHHHHHHHHH
Confidence            234799998543      2235788999999999999987643322 111  111111111111 112335667777777


Q ss_pred             c-CCCCCCCceeeeecCChhhHHHHHHHH--hcCCCceEEE
Q 020928          279 S-GKIDVKPLITHRFGFTQKEIEDAFEIS--AQGGNAIKVM  316 (319)
Q Consensus       279 ~-g~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~gkvv  316 (319)
                      + |.........+.+.+  +++.++++.+  .++...++.+
T Consensus       220 ~aGf~~v~i~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~  258 (272)
T PRK11873        220 EAGFVDITIQPKREYRI--PDAREFLEDWGIAPGRQLDGYI  258 (272)
T ss_pred             HCCCCceEEEeccceec--ccHHHHHHHhccccccccCceE
Confidence            6 433333333444566  8888998888  5554444444

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.48  E-value=8.8e-06  Score=69.13  Aligned_cols=135  Identities=21%  Similarity=0.324  Sum_probs=86.0

Q ss_pred             cceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928           92 SLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus        92 ~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +|.+|.. +...++.+++++++..+.. +........+.. .++++.+||-+|+|. |..++.+++ .|...|++++.++
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~h-~tt~~~l~~l~~-~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis~  152 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGTH-PTTRLCLEALEK-LVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDIDP  152 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCCC-HHHHHHHHHHHh-hcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECCH
Confidence            3445543 6677899999998887652 222223333332 257889999999988 888886655 6776799999999


Q ss_pred             hHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCCh---HHHHHHHHhhcCCCEEEEeccc
Q 020928          172 QRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD---KTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       172 ~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      ...+.+++.-....+.   .  .    + .+.. ....+|+|+.+....   ..++.+.+.|+++|+++..+..
T Consensus       153 ~~l~~A~~n~~~~~~~---~--~----~-~~~~-~~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        153 QAVEAARENAELNGVE---L--N----V-YLPQ-GDLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             HHHHHHHHHHHHcCCC---c--e----E-EEcc-CCCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            9888776531110000   0  0    0 0100 111589998766543   2456788899999999987643

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.37  E-value=8.8e-06  Score=73.54  Aligned_cols=103  Identities=23%  Similarity=0.265  Sum_probs=78.3

Q ss_pred             HHHHHHhc-CCC-CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHh
Q 020928          125 GVHACRRA-NVG-PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       125 a~~~l~~~-~~~-~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      +|+++.++ ++. .|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|+. +.+           +.++
T Consensus       198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~~-----------l~ea  264 (425)
T PRK05476        198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VMT-----------MEEA  264 (425)
T ss_pred             hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ecC-----------HHHH
Confidence            45666553 554 89999999999999999999999999 788898888776666555643 211           1112


Q ss_pred             hhhcCCCccEEEEccCChHHHH-HHHHhhcCCCEEEEecccCC
Q 020928          203 QNAMGSGIDVSFDCVGFDKTMS-TALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~  244 (319)
                      .    .++|++|++.|....+. ..+..+++++.++..|....
T Consensus       265 l----~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        265 A----ELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDN  303 (425)
T ss_pred             H----hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence            1    26899999999876665 68889999999999986554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.31  E-value=4.8e-05  Score=66.15  Aligned_cols=113  Identities=15%  Similarity=0.219  Sum_probs=83.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+.+++|+|.|.+|+.+++.++.+|+ .|.+.++++++.+.++++|...+ .+        ..+.+.    -.++|+||+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~--------~~l~~~----l~~aDiVI~  216 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL--------SELAEE----VGKIDIIFN  216 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH--------HHHHHH----hCCCCEEEE
Confidence            58999999999999999999999998 78889999888888888886532 11        112222    136999999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEee
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIF  264 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~  264 (319)
                      |++..-.....++.+++++.++.++..+....+  .....++++..+..
T Consensus       217 t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~~~~  263 (296)
T PRK08306        217 TIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKALLAP  263 (296)
T ss_pred             CCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEEEEC
Confidence            988653446677889999999999876554444  23344566666543

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.28  E-value=6.2e-06  Score=72.30  Aligned_cols=108  Identities=20%  Similarity=0.299  Sum_probs=81.3

Q ss_pred             CceEeCCCCCChhhhhccchhHHHHHHHHhcCC----CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhH-HHH
Q 020928          102 KLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV----GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR-LSI  176 (319)
Q Consensus       102 ~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~----~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~-~~~  176 (319)
                      ...+++|+.+..+.++...+.++++.+++.+..    -++.+|+|+|+|.+|..+++.++..|...|+++++++++ .++
T Consensus       139 ~~a~~~~k~vr~et~i~~~~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l  218 (311)
T cd05213         139 QKAIKVGKRVRTETGISRGAVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL  218 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            356778889999988888888888888765332    478999999999999999999998887788889998876 467


Q ss_pred             HHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHH
Q 020928          177 ARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKT  222 (319)
Q Consensus       177 ~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~  222 (319)
                      ++++|.. +..+        +.+.+..    ...|+||.|++.+..
T Consensus       219 a~~~g~~-~~~~--------~~~~~~l----~~aDvVi~at~~~~~  251 (311)
T cd05213         219 AKELGGN-AVPL--------DELLELL----NEADVVISATGAPHY  251 (311)
T ss_pred             HHHcCCe-EEeH--------HHHHHHH----hcCCEEEECCCCCch
Confidence            7888863 2221        1121111    358999999998754

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.8e-05  Score=63.93  Aligned_cols=105  Identities=16%  Similarity=0.223  Sum_probs=77.9

Q ss_pred             HHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChh----HHHHHHHcCCCEeeccCCCCcchhHHHHH
Q 020928          126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ----RLSIARNLGADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       126 ~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~~i~~  201 (319)
                      ...++...++++++||-+|+|+ |..+.-+|+..+  +|+++++.++    ....++.+|...+.....+ .  ..-   
T Consensus        62 A~m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD-G--~~G---  132 (209)
T COG2518          62 ARMLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGD-G--SKG---  132 (209)
T ss_pred             HHHHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC-c--ccC---
Confidence            4456778999999999999988 999999999988  7999999887    4445666887554432211 1  000   


Q ss_pred             hhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecc
Q 020928          202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +  .....||.|+-+.+.+..-+.+++.|+++|+++..-.
T Consensus       133 ~--~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         133 W--PEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             C--CCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence            1  1136799999888887777889999999999986643

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.20  E-value=1.3e-07  Score=86.09  Aligned_cols=159  Identities=19%  Similarity=0.258  Sum_probs=104.0

Q ss_pred             ccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCCcccccCCCCCCcceeEEeecCCceEe---C
Q 020928           31 VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYK---L  107 (319)
Q Consensus        31 i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~---i  107 (319)
                      .-|.|+++.+.++++++.+     +|++.+.. |++|.+|    |..|......|. ..++.|++++.++. .+..   |
T Consensus        89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~~g~-~l~~lf~~a~~~~k-~vr~~t~i  156 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKTVGK-VLERLFQKAFSVGK-RVRTETDI  156 (417)
T ss_pred             cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCCchH-HHHHHHHHHHHHhh-hhhhhcCC
Confidence            4788999999999998876     56666666 8888888    344433333221 34678999988876 3322   3


Q ss_pred             -CCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHH-HHHHHcCCCEe
Q 020928          108 -PDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL-SIARNLGADET  185 (319)
Q Consensus       108 -P~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~-~~~~~~g~~~v  185 (319)
                       +..+|...+|.       -.+.+.....++++++|+|+|.+|..+++.++..|+..|++++++.++. +++++++... 
T Consensus       157 ~~~~vSv~~~Av-------~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~-  228 (417)
T TIGR01035       157 SAGAVSISSAAV-------ELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEA-  228 (417)
T ss_pred             CCCCcCHHHHHH-------HHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeE-
Confidence             22333322210       0112333446789999999999999999999999976888998988774 4667777532 


Q ss_pred             eccCCCCcchhHHHHHhhhhcCCCccEEEEccCChH
Q 020928          186 AKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDK  221 (319)
Q Consensus       186 ~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~  221 (319)
                      +.+        ..+.+..    .++|+||+|++.+.
T Consensus       229 i~~--------~~l~~~l----~~aDvVi~aT~s~~  252 (417)
T TIGR01035       229 VKF--------EDLEEYL----AEADIVISSTGAPH  252 (417)
T ss_pred             eeH--------HHHHHHH----hhCCEEEECCCCCC
Confidence            221        1111111    36899999998764

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=98.13  E-value=0.00024  Score=61.24  Aligned_cols=237  Identities=11%  Similarity=0.108  Sum_probs=128.9

Q ss_pred             EEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCCcccccCC--------------CCCCcceeEEeecCCc
Q 020928           38 GIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP--------------PTNGSLAHKVVHPAKL  103 (319)
Q Consensus        38 G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~g~~~e~~~~~~~~  103 (319)
                      ++|++  +++.++.+|.||.+..               +++.+...-...              ...-.|-+|.++..+.
T Consensus        39 A~Vve--S~~~~i~vGerlyGy~---------------P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~  101 (314)
T PF11017_consen   39 ATVVE--SRHPGIAVGERLYGYF---------------PMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADP  101 (314)
T ss_pred             EEEEe--eCCCCccCccEEEeec---------------cccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCc
Confidence            45555  6788899999999752               222221111111              1123355565555443


Q ss_pred             eEeCCCCCChhhh-hcc-chhHHHHHHHHh---cCCCCCCeEEEEC-CCHHHHHHHHHHH-HcCCCeEEEecCChhHHHH
Q 020928          104 CYKLPDNVSLEEG-AMC-EPLSVGVHACRR---ANVGPETNVMIMG-SGPIGLVTLLAAR-AFGAPRIIITDVDVQRLSI  176 (319)
Q Consensus       104 ~~~iP~~~~~~~a-a~~-~~~~~a~~~l~~---~~~~~~~~vlI~G-~g~vG~~ai~la~-~~g~~~vv~v~~~~~~~~~  176 (319)
                      .+.-    +.+.. +++ +.+.|.|..-+.   .+.-..+.|+|.+ ++-.++.+...++ ..+..++|.++ |+.+..+
T Consensus       102 ~y~~----~~e~~~~LlrPLf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~F  176 (314)
T PF11017_consen  102 AYDP----EREDWQMLLRPLFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAF  176 (314)
T ss_pred             ccCc----chhHHHHHHHHHHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhh
Confidence            3311    22222 233 445666644322   3344456677776 4777777777776 45555788884 5566679


Q ss_pred             HHHcC-CCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCE-EEEecccCCccc-------
Q 020928          177 ARNLG-ADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK-VCLIGLAKTEMT-------  247 (319)
Q Consensus       177 ~~~~g-~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~-~v~~g~~~~~~~-------  247 (319)
                      ++++| .+.++.|+.        +.++.   ...--+++|..|+.+....+.+++...=+ .+.+|....+..       
T Consensus       177 ve~lg~Yd~V~~Yd~--------i~~l~---~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th~~~~~~~~~l~  245 (314)
T PF11017_consen  177 VESLGCYDEVLTYDD--------IDSLD---APQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATHWDKVEAPADLP  245 (314)
T ss_pred             hhccCCceEEeehhh--------hhhcc---CCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccCccccCccccCC
Confidence            99999 567777743        33332   34567899999999888888888877643 455564322110       


Q ss_pred             ------ccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC
Q 020928          248 ------VALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG  310 (319)
Q Consensus       248 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  310 (319)
                            ++....+.+.++-.|...+.+.+.+.+..+.+.... .-.+.+.-+.  +.++++++.+.+++
T Consensus       246 g~~~~~FFAp~~~~kr~~~~G~~~~~~r~~~aw~~f~~~~~~-wl~~~~~~G~--ea~~~~y~~l~~G~  311 (314)
T PF11017_consen  246 GPRPEFFFAPDQIDKRIKEWGAAEFFQRMAAAWKRFAADAQP-WLKVEEVAGP--EAVEAAYQDLLAGK  311 (314)
T ss_pred             CCCcEEEeChHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhcC-cEEEEEecCH--HHHHHHHHHHhcCC
Confidence                  111112222222222222222233333333332221 2223455677  99999999988774

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.13  E-value=6.6e-05  Score=67.54  Aligned_cols=102  Identities=24%  Similarity=0.267  Sum_probs=76.7

Q ss_pred             HHHHHHh-cC-CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHh
Q 020928          125 GVHACRR-AN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       125 a~~~l~~-~~-~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      ++.++.+ .+ .-.|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.+...++..|+.. ..       ..+.   +
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~v-~~-------leea---l  248 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFRV-MT-------MEEA---A  248 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCEe-CC-------HHHH---H
Confidence            3444433 34 4689999999999999999999999999 6888888887776666666522 11       1111   1


Q ss_pred             hhhcCCCccEEEEccCChHHHHH-HHHhhcCCCEEEEecccC
Q 020928          203 QNAMGSGIDVSFDCVGFDKTMST-ALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~~~~-~~~~l~~~G~~v~~g~~~  243 (319)
                           .+.|++|++.|....+.. .+..+++++.++.+|...
T Consensus       249 -----~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       249 -----KIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             -----hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence                 257999999998876664 888999999999998654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02494 adenosylhomocysteinase

Probab=97.99  E-value=0.00013  Score=66.30  Aligned_cols=101  Identities=24%  Similarity=0.277  Sum_probs=76.3

Q ss_pred             HHHHHh-cCC-CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhh
Q 020928          126 VHACRR-ANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       126 ~~~l~~-~~~-~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      +.++.+ .++ -.|++++|+|.|.+|+.+++.++.+|+ +|++++.++.+...+...|+..+ .       ..+    ..
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~vv-~-------leE----al  307 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQVL-T-------LED----VV  307 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCeec-c-------HHH----HH
Confidence            555533 333 679999999999999999999999999 68888888877666666665421 1       111    11


Q ss_pred             hhcCCCccEEEEccCChHH-HHHHHHhhcCCCEEEEecccC
Q 020928          204 NAMGSGIDVSFDCVGFDKT-MSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~G~~v~~g~~~  243 (319)
                          ...|+++.+.|.... ....+..|++++.++.+|...
T Consensus       308 ----~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~  344 (477)
T PLN02494        308 ----SEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD  344 (477)
T ss_pred             ----hhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCC
Confidence                247999999998754 478999999999999998754

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.85  E-value=6.2e-05  Score=68.93  Aligned_cols=160  Identities=19%  Similarity=0.303  Sum_probs=98.9

Q ss_pred             cccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCC
Q 020928           30 MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD  109 (319)
Q Consensus        30 ~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~  109 (319)
                      .--|+|+++.+.++++++.+.-+|+.-     . |++|..    -+..|......+ ...++.|++.        +++|+
T Consensus        90 ~~~g~ea~~hl~~V~~GldS~V~GE~q-----I-lgQvk~----a~~~a~~~g~~g-~~l~~lf~~a--------~~~~k  150 (423)
T PRK00045         90 VHEGEEAVRHLFRVASGLDSMVLGEPQ-----I-LGQVKD----AYALAQEAGTVG-TILNRLFQKA--------FSVAK  150 (423)
T ss_pred             hcCCHHHHHHHHHHHhhhhhhhcCChH-----H-HHHHHH----HHHHHHHcCCch-HHHHHHHHHH--------HHHHh
Confidence            346999999999999998774444432     2 333331    111111111110 0123444443        34455


Q ss_pred             CCChhhhhccchhHHHHHHHHhcC----CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCCE
Q 020928          110 NVSLEEGAMCEPLSVGVHACRRAN----VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADE  184 (319)
Q Consensus       110 ~~~~~~aa~~~~~~~a~~~l~~~~----~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~~  184 (319)
                      .+..+.+..-.+.++++.+++.+.    -.++.+++|+|+|.+|.++++.++..|+..|++++++.++.+ +++++|.. 
T Consensus       151 ~v~~~t~i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-  229 (423)
T PRK00045        151 RVRTETGIGAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-  229 (423)
T ss_pred             hHhhhcCCCCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-
Confidence            555444444456777777775432    257899999999999999999999999878888889887754 67777753 


Q ss_pred             eeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChH
Q 020928          185 TAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDK  221 (319)
Q Consensus       185 v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~  221 (319)
                      ++.+        ..+.+.    -.++|+||+|++.+.
T Consensus       230 ~~~~--------~~~~~~----l~~aDvVI~aT~s~~  254 (423)
T PRK00045        230 AIPL--------DELPEA----LAEADIVISSTGAPH  254 (423)
T ss_pred             EeeH--------HHHHHH----hccCCEEEECCCCCC
Confidence            2221        111111    136899999999763

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.84  E-value=0.00019  Score=64.50  Aligned_cols=96  Identities=20%  Similarity=0.351  Sum_probs=67.0

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      ++.+++|+|+|.+|+.+++.++.+|+ .|+++++++++.+.+.. ++......+.    + .+.+.+..    .++|++|
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~----~-~~~l~~~l----~~aDvVI  235 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYS----N-AYEIEDAV----KRADLLI  235 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccC----C-HHHHHHHH----ccCCEEE
Confidence            34569999999999999999999999 68889998888776654 4543221111    1 11222221    3689999


Q ss_pred             EccC---C--hH-HHHHHHHhhcCCCEEEEecc
Q 020928          215 DCVG---F--DK-TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       215 d~~g---~--~~-~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +|++   .  +. .....++.+++++.++.++.
T Consensus       236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~  268 (370)
T TIGR00518       236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAI  268 (370)
T ss_pred             EccccCCCCCCcCcCHHHHhcCCCCCEEEEEec
Confidence            9983   2  11 23677788999999999874

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.82  E-value=0.00083  Score=58.13  Aligned_cols=111  Identities=15%  Similarity=0.181  Sum_probs=77.5

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+++++|+|.|.+|.+++..++.+|+ +|.+.++++++.+.+.+++...+ .+        ..+.+.    -.+.|+||+
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~~-~~--------~~l~~~----l~~aDiVin  215 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIPF-PL--------NKLEEK----VAEIDIVIN  215 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeee-cH--------HHHHHH----hccCCEEEE
Confidence            47899999999999999999999998 78888888887777666664321 11        112222    136899999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEE
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG  262 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~  262 (319)
                      +++..-.....++.++++..++.++..+...++  ...-.++++...
T Consensus       216 t~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~~  260 (287)
T TIGR02853       216 TIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKALL  260 (287)
T ss_pred             CCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEEE
Confidence            987542234567788888888888876655554  444455555553

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.82  E-value=1.7e-05  Score=75.46  Aligned_cols=80  Identities=21%  Similarity=0.374  Sum_probs=56.6

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC---------------------hhHHHHHHHcCCCEeeccCCC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD---------------------VQRLSIARNLGADETAKVSTD  191 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~---------------------~~~~~~~~~~g~~~v~~~~~~  191 (319)
                      ..++|++|+|+|+|++|+++++.++..|+ .|++++..                     +.+.+.++++|++..++... 
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~-  210 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV-  210 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE-
Confidence            36789999999999999999999999999 57777642                     34667788899766543211 


Q ss_pred             CcchhHHHHHhhhhcCCCccEEEEccCCh
Q 020928          192 IEDVDTDVGKIQNAMGSGIDVSFDCVGFD  220 (319)
Q Consensus       192 ~~~~~~~i~~~~~~~~~~~d~v~d~~g~~  220 (319)
                      ..+..  ...+    ..++|+||+++|..
T Consensus       211 ~~~~~--~~~~----~~~~D~Vi~AtG~~  233 (564)
T PRK12771        211 GEDIT--LEQL----EGEFDAVFVAIGAQ  233 (564)
T ss_pred             CCcCC--HHHH----HhhCCEEEEeeCCC
Confidence            01211  1111    23699999999976

>PRK08324 short chain dehydrogenase; Validated

Probab=97.80  E-value=0.00023  Score=69.45  Aligned_cols=140  Identities=19%  Similarity=0.267  Sum_probs=84.1

Q ss_pred             CcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC
Q 020928           91 GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus        91 g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      -++++|..+++..++.+ +.++.++|.....        -.....+++++||+| +|.+|..+++.+...|+ .|+.+++
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~--------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r  454 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRM--------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL  454 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhhcC--------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            34566777776666666 5566666641100        011223678999998 69999999999989998 6888888


Q ss_pred             ChhHHHHHHH-cCC---CEeeccC-CCCcchhHHHHHhhhhcCCCccEEEEccCCh------------------------
Q 020928          170 DVQRLSIARN-LGA---DETAKVS-TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD------------------------  220 (319)
Q Consensus       170 ~~~~~~~~~~-~g~---~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~------------------------  220 (319)
                      +.++.+.+.+ ++.   ...+..+ .+..+....+.++.+. .+++|++|++.|..                        
T Consensus       455 ~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~-~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~  533 (681)
T PRK08324        455 DEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALA-FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGH  533 (681)
T ss_pred             CHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHH-cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHH
Confidence            8876654433 442   1111112 1222223333333332 34799999999831                        


Q ss_pred             -HHHHHHHHhhcC---CCEEEEecc
Q 020928          221 -KTMSTALNATRP---GGKVCLIGL  241 (319)
Q Consensus       221 -~~~~~~~~~l~~---~G~~v~~g~  241 (319)
                       ...+.+.+.++.   +|+++.+++
T Consensus       534 ~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        534 FLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEECC
Confidence             123444566655   588998875

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.72  E-value=0.00072  Score=53.55  Aligned_cols=102  Identities=22%  Similarity=0.312  Sum_probs=69.7

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEeeccCCCCcchhHHHHHhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      +...++++++.++=+|+|. |...+++|+..-..+++++++++++.+..+    +||.+.+.....   +..+.+..+  
T Consensus        27 ls~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g---~Ap~~L~~~--  100 (187)
T COG2242          27 LSKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG---DAPEALPDL--  100 (187)
T ss_pred             HHhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec---cchHhhcCC--
Confidence            3557889999777788766 677788885544448999999988776654    578665544333   222333221  


Q ss_pred             hcCCCccEEEEccCC--hHHHHHHHHhhcCCCEEEEe
Q 020928          205 AMGSGIDVSFDCVGF--DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~--~~~~~~~~~~l~~~G~~v~~  239 (319)
                         ..+|.+|--=|.  ++.++.++..|+++|+++.-
T Consensus       101 ---~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~n  134 (187)
T COG2242         101 ---PSPDAIFIGGGGNIEEILEAAWERLKPGGRLVAN  134 (187)
T ss_pred             ---CCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEE
Confidence               268999843332  35788999999999999854

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.69  E-value=0.00091  Score=54.66  Aligned_cols=102  Identities=17%  Similarity=0.310  Sum_probs=70.4

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHH----HcC-CCEeeccCCCCcchhHHHHHh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIAR----NLG-ADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~----~~g-~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      +.+.++.++++++.+|+|. |..++++|+..+. .+|++++.+++..+.++    .++ .+.+....   .+..+.+.. 
T Consensus        33 l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~---~d~~~~l~~-  107 (198)
T PRK00377         33 LSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK---GEAPEILFT-  107 (198)
T ss_pred             HHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE---echhhhHhh-
Confidence            4567899999999999988 8899999887642 37999999998877654    355 23322211   122222221 


Q ss_pred             hhhcCCCccEEEEccCC---hHHHHHHHHhhcCCCEEEE
Q 020928          203 QNAMGSGIDVSFDCVGF---DKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~  238 (319)
                         ....+|.||...+.   ...+..+.+.|+++|+++.
T Consensus       108 ---~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        108 ---INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             ---cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence               23579999985543   3467788889999999885

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.68  E-value=0.0008  Score=58.42  Aligned_cols=96  Identities=20%  Similarity=0.314  Sum_probs=64.5

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCE-eeccCCCCcchhHHHHHhhhhcCC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADE-TAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~-v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      .+++++||-+|+|+ |..++.+++ .|..+|++++.++...+.+++.    +... +.....   +    .   ......
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~---~----~---~~~~~~  224 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI---Y----L---EQPIEG  224 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec---c----c---ccccCC
Confidence            45789999999988 888877776 5777899999999887777652    2111 111100   0    0   111235


Q ss_pred             CccEEEEccCCh---HHHHHHHHhhcCCCEEEEecc
Q 020928          209 GIDVSFDCVGFD---KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       209 ~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ++|+|+......   ..+..+.+.|+++|+++..|.
T Consensus       225 ~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       225 KADVIVANILAEVIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             CceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            799998765543   356677889999999988764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.62  E-value=0.0016  Score=53.82  Aligned_cols=81  Identities=25%  Similarity=0.370  Sum_probs=57.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCC--CE--eeccCCCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA--DE--TAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~--~~--v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      +++.++|.| ++++|.+..+.+...|+ +++.+.++.++++.+. +++.  ..  .+|+ .+..+....+..+.+.. +.
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DV-tD~~~~~~~i~~~~~~~-g~   81 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDV-TDRAAVEAAIEALPEEF-GR   81 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeecc-CCHHHHHHHHHHHHHhh-Cc
Confidence            346788999 59999999999999999 7888888888877554 4773  12  2332 23334445555555433 47


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|+++++.|-
T Consensus        82 iDiLvNNAGl   91 (246)
T COG4221          82 IDILVNNAGL   91 (246)
T ss_pred             ccEEEecCCC
Confidence            9999999986

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=0.0011  Score=56.88  Aligned_cols=130  Identities=20%  Similarity=0.328  Sum_probs=79.5

Q ss_pred             CCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-
Q 020928          101 AKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-  179 (319)
Q Consensus       101 ~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-  179 (319)
                      ....+++.+++.|-... -++...+..++++ .++++.++|=+|+|+ |.++|..++ +|+.+++++|..+...+.+++ 
T Consensus       129 ~~~~i~lDPGlAFGTG~-HpTT~lcL~~Le~-~~~~g~~vlDvGcGS-GILaIAa~k-LGA~~v~g~DiDp~AV~aa~eN  204 (300)
T COG2264         129 DELNIELDPGLAFGTGT-HPTTSLCLEALEK-LLKKGKTVLDVGCGS-GILAIAAAK-LGAKKVVGVDIDPQAVEAAREN  204 (300)
T ss_pred             CceEEEEccccccCCCC-ChhHHHHHHHHHH-hhcCCCEEEEecCCh-hHHHHHHHH-cCCceEEEecCCHHHHHHHHHH
Confidence            35667777777554221 1222223333433 356999999999988 888887666 588799999998877666554 


Q ss_pred             ---cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCCh---HHHHHHHHhhcCCCEEEEeccc
Q 020928          180 ---LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD---KTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       180 ---~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                         -+.... .  . ...+ ..   .....+..+|+|+-++=..   .+...+.++++++|++++.|.-
T Consensus       205 a~~N~v~~~-~--~-~~~~-~~---~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         205 ARLNGVELL-V--Q-AKGF-LL---LEVPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             HHHcCCchh-h--h-cccc-cc---hhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence               222210 0  0 0000 00   0111235899999776543   3466777899999999998843

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.55  E-value=0.0028  Score=53.96  Aligned_cols=102  Identities=20%  Similarity=0.369  Sum_probs=71.0

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~~  203 (319)
                      ++..++++|.+||=+|+|- |-+++.+|+..|+ +|++++-|++..+.+++    .|.. .+-..-.   |    .+.+.
T Consensus        65 ~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~---d----~rd~~  135 (283)
T COG2230          65 LEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQ---D----YRDFE  135 (283)
T ss_pred             HHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEec---c----ccccc
Confidence            3669999999999999988 8889999999999 79999999988776655    4543 1111111   1    11121


Q ss_pred             hhcCCCccEE-----EEccCC---hHHHHHHHHhhcCCCEEEEecccC
Q 020928          204 NAMGSGIDVS-----FDCVGF---DKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       204 ~~~~~~~d~v-----~d~~g~---~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                          ..||.|     |+-+|.   ++.+..+.+.|+++|++.+.....
T Consensus       136 ----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         136 ----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             ----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence                237766     344454   246778888999999998766433

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.52  E-value=0.00079  Score=61.50  Aligned_cols=93  Identities=20%  Similarity=0.275  Sum_probs=70.4

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .-.|++++|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|+..+        +    +.++.    ...|+|
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~~--------~----leell----~~ADIV  313 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQVV--------T----LEDVV----ETADIF  313 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCceec--------c----HHHHH----hcCCEE
Confidence            4578999999999999999999999999 68888777766544444554321        1    11221    358999


Q ss_pred             EEccCChHHHH-HHHHhhcCCCEEEEecccC
Q 020928          214 FDCVGFDKTMS-TALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       214 ~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~~  243 (319)
                      +.+.|....+. ..+..|++++.++.+|...
T Consensus       314 I~atGt~~iI~~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        314 VTATGNKDIITLEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             EECCCcccccCHHHHhccCCCcEEEEcCCCc
Confidence            99999876654 7899999999999998653

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.49  E-value=0.0018  Score=56.85  Aligned_cols=103  Identities=22%  Similarity=0.287  Sum_probs=71.9

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHH----HcCCCEeeccCCCCcchhHHHHHh
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIAR----NLGADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      .++...++++++||.+|+|. |..++.+++..+. ..|++++.+++..+.++    +.|.+.+....   .|..+.+   
T Consensus        72 ll~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~---gD~~~~~---  144 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC---GDGYYGV---  144 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe---CChhhcc---
Confidence            34557788999999999985 9999999998764 25899999988666554    35654433221   1221111   


Q ss_pred             hhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      .  ....+|+|+.+.+.........+.|+++|+++..
T Consensus       145 ~--~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        145 P--EFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             c--ccCCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence            1  1246999999888665667788999999998764

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.49  E-value=0.00058  Score=58.98  Aligned_cols=127  Identities=21%  Similarity=0.390  Sum_probs=73.2

Q ss_pred             CceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH--
Q 020928          102 KLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN--  179 (319)
Q Consensus       102 ~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~--  179 (319)
                      ..++.|.+++.|-...- ++...+...+++. .+++++||=+|+|+ |.++|..++ +|+++|+++|..+...+.+++  
T Consensus       129 ~~~I~idPg~AFGTG~H-~TT~lcl~~l~~~-~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~  204 (295)
T PF06325_consen  129 EIVIEIDPGMAFGTGHH-PTTRLCLELLEKY-VKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDIDPLAVEAARENA  204 (295)
T ss_dssp             SEEEEESTTSSS-SSHC-HHHHHHHHHHHHH-SSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHH
T ss_pred             cEEEEECCCCcccCCCC-HHHHHHHHHHHHh-ccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHH
Confidence            44455555555433311 1122223333333 67888999999876 777766666 599899999999887666554  


Q ss_pred             --cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChH---HHHHHHHhhcCCCEEEEecccC
Q 020928          180 --LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDK---TMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       180 --~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~---~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                        -+....+.... ..+          .....+|+|+-++-.+-   ....+.++|+++|.++..|...
T Consensus       205 ~~N~~~~~~~v~~-~~~----------~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  205 ELNGVEDRIEVSL-SED----------LVEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             HHTT-TTCEEESC-TSC----------TCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred             HHcCCCeeEEEEE-ecc----------cccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence              23222111111 011          11367999998887652   3445566889999999988544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.48  E-value=0.0026  Score=51.25  Aligned_cols=83  Identities=20%  Similarity=0.288  Sum_probs=60.3

Q ss_pred             CCCeEEEEC-C-CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCE-eeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-S-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADE-TAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~-g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~-v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ....|||.| + |++|.+...-..+.|+ .|+++.++-+....+. ++|... -.|+ +++++..+....+++...++.|
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV-~~~~~V~~v~~evr~~~~Gkld   83 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDV-SKPEEVVTVSGEVRANPDGKLD   83 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEecc-CChHHHHHHHHHHhhCCCCceE
Confidence            356789987 3 9999998888888899 8999988888777666 566322 2332 3444555555666665678899


Q ss_pred             EEEEccCCh
Q 020928          212 VSFDCVGFD  220 (319)
Q Consensus       212 ~v~d~~g~~  220 (319)
                      +.++..|.+
T Consensus        84 ~L~NNAG~~   92 (289)
T KOG1209|consen   84 LLYNNAGQS   92 (289)
T ss_pred             EEEcCCCCC
Confidence            999999875

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.48  E-value=0.0011  Score=50.64  Aligned_cols=73  Identities=19%  Similarity=0.278  Sum_probs=52.4

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCC--EeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD--ETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~--~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .+.+++|+|+|++|.+++..+...|++.+.++.++.++.+.+ ++++..  ..+.++    +    +.+.    -..+|+
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~----~----~~~~----~~~~Di   78 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLE----D----LEEA----LQEADI   78 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGG----G----HCHH----HHTESE
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHH----H----HHHH----HhhCCe
Confidence            578999999999999999999999998899999998876655 445322  122221    1    1111    136999


Q ss_pred             EEEccCCh
Q 020928          213 SFDCVGFD  220 (319)
Q Consensus       213 v~d~~g~~  220 (319)
                      ||+|.+.+
T Consensus        79 vI~aT~~~   86 (135)
T PF01488_consen   79 VINATPSG   86 (135)
T ss_dssp             EEE-SSTT
T ss_pred             EEEecCCC
Confidence            99998875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.47  E-value=0.00073  Score=55.48  Aligned_cols=105  Identities=20%  Similarity=0.287  Sum_probs=68.7

Q ss_pred             HHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHH----HHcCCCEeeccCCCCcchhHHHH
Q 020928          126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIA----RNLGADETAKVSTDIEDVDTDVG  200 (319)
Q Consensus       126 ~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~i~  200 (319)
                      ...++...+++|++||-+|+|+ |..+.-+++..|.. +|++++..++-.+.+    ++++.+.+.....   |-...  
T Consensus        62 a~~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g---dg~~g--  135 (209)
T PF01135_consen   62 ARMLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVG---DGSEG--  135 (209)
T ss_dssp             HHHHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES----GGGT--
T ss_pred             HHHHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEc---chhhc--
Confidence            3355667899999999999887 88888888888754 588998887654444    4456543322111   11111  


Q ss_pred             HhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          201 KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       201 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                       +.  ....||.|+-+.+-+......++.|+++|+++..
T Consensus       136 -~~--~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  136 -WP--EEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             -TG--GG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred             -cc--cCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEE
Confidence             11  2357999998888776778899999999999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.45  E-value=0.0043  Score=51.29  Aligned_cols=103  Identities=15%  Similarity=0.226  Sum_probs=69.3

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHh
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      .+...+++++++||-+|+|. |..+..+++..+. .+|++++.+++-.+.+++    .+...+.....   |....   +
T Consensus        68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g---d~~~~---~  140 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG---DGTLG---Y  140 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC---CcccC---C
Confidence            44567789999999999877 7788888887753 279999999887766654    34322211111   11000   0


Q ss_pred             hhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                        .....||.|+-+.........+.+.|+++|+++..
T Consensus       141 --~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        141 --EENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             --CcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence              12357999876555555677889999999998875

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.36  E-value=0.0063  Score=51.00  Aligned_cols=105  Identities=19%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcC---CCEeeccCCC-CcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG---ADETAKVSTD-IEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g---~~~v~~~~~~-~~~~~~~i~~~~~~~~~~  209 (319)
                      .+++++|+| +|.+|..+++.+...|+ .|+.+++++++.+.+ +++.   ..+.+..+-. .++....+++.... -++
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~   81 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKV-LNA   81 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHH-hCC
Confidence            467999998 59999999999999999 678888887766554 2222   1122222211 11222222222221 246


Q ss_pred             ccEEEEccCCh-----------------------HHHHHHHHhhcCCCEEEEeccc
Q 020928          210 IDVSFDCVGFD-----------------------KTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       210 ~d~v~d~~g~~-----------------------~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      +|.++.+.+..                       ...+...++++.+|+++.++..
T Consensus        82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  137 (238)
T PRK05786         82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM  137 (238)
T ss_pred             CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            89999888742                       1244555667778999988753

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.30  E-value=0.0083  Score=44.59  Aligned_cols=102  Identities=20%  Similarity=0.284  Sum_probs=67.4

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ....++++++++-+|+|. |..+..+++..+...+++++.++...+.+++    ++...+.....   +.......    
T Consensus        13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~----   84 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEG---DAPEALED----   84 (124)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEec---cccccChh----
Confidence            445677788899999887 8889999998754589999999887776643    44332211111   11000101    


Q ss_pred             cCCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ....+|.|+-..+.   ...++.+.+.|+++|+++..
T Consensus        85 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        85 SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence            13479999875433   23678899999999998864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14967 putative methyltransferase; Provisional

Probab=97.30  E-value=0.0068  Score=50.54  Aligned_cols=100  Identities=24%  Similarity=0.299  Sum_probs=65.3

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      +....++++++||-.|+|. |..++.+++. +..++++++.+++..+.+++    .+....+ ..   .++.+.   +  
T Consensus        29 l~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~-~~---~d~~~~---~--   97 (223)
T PRK14967         29 LAAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDV-RR---GDWARA---V--   97 (223)
T ss_pred             HHhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEE-EE---Cchhhh---c--
Confidence            4445678899999999988 8888888875 55589999999987776554    3332111 11   122221   1  


Q ss_pred             hcCCCccEEEEccC--------------------C-------hHHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFDCVG--------------------F-------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d~~g--------------------~-------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                       ....+|+|+...+                    +       ...+..+.+.|+++|+++.+.
T Consensus        98 -~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~  159 (223)
T PRK14967         98 -EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ  159 (223)
T ss_pred             -cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence             1357999986521                    0       113456778999999988653

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0027  Score=54.73  Aligned_cols=82  Identities=18%  Similarity=0.251  Sum_probs=54.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEe-eccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .+++++|+| +|.+|..+++.+...|. .|+++++++++.+.+.+.+...+ .|+ .+.++....+..+.+..++.+|++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl-~d~~~~~~~~~~~~~~~~g~id~l   80 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDY-AEPESIAALVAQVLELSGGRLDAL   80 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccC-CCHHHHHHHHHHHHHHcCCCccEE
Confidence            467899998 59999999998888898 68888888887776666554332 122 222233333444433334579999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        81 i~~Ag~   86 (277)
T PRK05993         81 FNNGAY   86 (277)
T ss_pred             EECCCc
Confidence            998763

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.27  E-value=0.0064  Score=50.37  Aligned_cols=103  Identities=16%  Similarity=0.183  Sum_probs=67.4

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHh
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      .++...++++++||-+|+|. |..++.+++..+. ..|++++.+++..+.+++    ++.+.+.....   +....   +
T Consensus        69 ~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~---d~~~~---~  141 (215)
T TIGR00080        69 MTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVG---DGTQG---W  141 (215)
T ss_pred             HHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC---CcccC---C
Confidence            44557789999999999877 7777788887653 258999999887766654    44432221111   11110   0


Q ss_pred             hhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      .  ....||+|+-..........+.+.|+++|+++..
T Consensus       142 ~--~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       142 E--PLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             c--ccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEE
Confidence            0  1247999875544444667788999999998764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.18  E-value=0.0011  Score=48.62  Aligned_cols=93  Identities=25%  Similarity=0.415  Sum_probs=63.0

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHH-cCCCeEEEecCChhHHHHHHHc----CC-CEeeccCCCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARNL----GA-DETAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~-~g~~~vv~v~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      |+.+||-+|+|. |..++.+++. .++ ++++++.+++..+.+++.    +. +.+....   .++ .    .......+
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~---~d~-~----~~~~~~~~   70 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQ---GDA-E----FDPDFLEP   70 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE---SCC-H----GGTTTSSC
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---Ccc-c----cCcccCCC
Confidence            678999999887 8888888885 566 899999999988887762    21 2221111   122 1    11112457


Q ss_pred             ccEEEEcc-CCh---------HHHHHHHHhhcCCCEEEE
Q 020928          210 IDVSFDCV-GFD---------KTMSTALNATRPGGKVCL  238 (319)
Q Consensus       210 ~d~v~d~~-g~~---------~~~~~~~~~l~~~G~~v~  238 (319)
                      +|+|+... ...         ..++.+.+.|+|+|+++.
T Consensus        71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence            99999876 211         237888899999999875

...

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.16  E-value=0.013  Score=48.10  Aligned_cols=103  Identities=15%  Similarity=0.208  Sum_probs=67.7

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCE-eeccCCCCcchhHHHHH
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADE-TAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~-v~~~~~~~~~~~~~i~~  201 (319)
                      .++...++++++||-+|+|. |..+..+++..+ ...|++++.+++..+.+++    .+... +.....   +..+.   
T Consensus        64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~---d~~~~---  136 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG---DGKRG---  136 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC---CcccC---
Confidence            34557788999999999877 777778888764 2279999999886665543    44321 111111   11111   


Q ss_pred             hhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +.  ....+|.|+-+.........+.+.|+++|+++..
T Consensus       137 ~~--~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        137 LE--KHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             Cc--cCCCccEEEEccCcchhhHHHHHhcCcCcEEEEE
Confidence            11  1347999987666555667888999999998764

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.14  E-value=0.0043  Score=52.57  Aligned_cols=85  Identities=19%  Similarity=0.177  Sum_probs=55.6

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCC-----CEeeccCCCCcchhHHHHHhhhhcC
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGA-----DETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~-----~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      ..+.+++|+| ++++|...+..+...|. .++-+.|++++++.+.+ +.-     ..++..+-.+.+-...+.......+
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            4678999999 59999999888888898 67777799988776643 331     1233333222222223332222234


Q ss_pred             CCccEEEEccCCh
Q 020928          208 SGIDVSFDCVGFD  220 (319)
Q Consensus       208 ~~~d~v~d~~g~~  220 (319)
                      ..+|+.++++|-.
T Consensus        83 ~~IdvLVNNAG~g   95 (265)
T COG0300          83 GPIDVLVNNAGFG   95 (265)
T ss_pred             CcccEEEECCCcC
Confidence            5799999999963

>PRK06182 short chain dehydrogenase; Validated

Probab=97.11  E-value=0.0086  Score=51.44  Aligned_cols=81  Identities=23%  Similarity=0.288  Sum_probs=53.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEe-eccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      ++.+++|+| +|.+|..+++.+...|. .|+.+++++++.+.+.+.+...+ .|+ .+.+++...+.++.+. .+++|++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv-~~~~~~~~~~~~~~~~-~~~id~l   78 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDV-TDEASIKAAVDTIIAE-EGRIDVL   78 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeC-CCHHHHHHHHHHHHHh-cCCCCEE
Confidence            357899998 59999999998888898 68888888777665544443322 122 2222333344444332 3579999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        79 i~~ag~   84 (273)
T PRK06182         79 VNNAGY   84 (273)
T ss_pred             EECCCc
Confidence            999884

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.11  E-value=0.0071  Score=48.50  Aligned_cols=108  Identities=21%  Similarity=0.242  Sum_probs=72.1

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      -.|.+|.|+|.|.+|..+++.++.+|. +|++.+++....+.....+...    .    +    +.++.    ...|+|+
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~----~----~----l~ell----~~aDiv~   96 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEY----V----S----LDELL----AQADIVS   96 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEE----S----S----HHHHH----HH-SEEE
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccccee----e----e----hhhhc----chhhhhh
Confidence            468999999999999999999999999 8999988887766444444311    1    2    22222    2478888


Q ss_pred             EccCChH-----HHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCC
Q 020928          215 DCVGFDK-----TMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       215 d~~g~~~-----~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~  282 (319)
                      .+....+     .-...+..|+++..++.++....                       -+.+.+++.+++|++
T Consensus        97 ~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~-----------------------vde~aL~~aL~~g~i  146 (178)
T PF02826_consen   97 LHLPLTPETRGLINAEFLAKMKPGAVLVNVARGEL-----------------------VDEDALLDALESGKI  146 (178)
T ss_dssp             E-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGG-----------------------B-HHHHHHHHHTTSE
T ss_pred             hhhccccccceeeeeeeeeccccceEEEeccchhh-----------------------hhhhHHHHHHhhccC
Confidence            7776321     22456788999998888764321                       235566777777776

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.04  E-value=0.0079  Score=53.80  Aligned_cols=97  Identities=14%  Similarity=0.186  Sum_probs=64.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC--CCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG--ADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+|||+|+|.+|+.+++.+.+.+-..|.+++++.++.+.+....  --....++..  +. +.+.++.    .++|+||+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~--d~-~al~~li----~~~d~VIn   74 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAA--DV-DALVALI----KDFDLVIN   74 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEeccc--Ch-HHHHHHH----hcCCEEEE
Confidence            47899999999999999988888458999999999888886653  1122222222  21 2233332    24599999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEecc
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +.+..-....+-.+++.+=.++.+..
T Consensus        75 ~~p~~~~~~i~ka~i~~gv~yvDts~  100 (389)
T COG1748          75 AAPPFVDLTILKACIKTGVDYVDTSY  100 (389)
T ss_pred             eCCchhhHHHHHHHHHhCCCEEEccc
Confidence            99976334444456666666776654

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.01  E-value=0.004  Score=53.47  Aligned_cols=99  Identities=21%  Similarity=0.392  Sum_probs=59.8

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ++++++++|++||-+|+|- |-.++.+|+..|+ .|.+++.|++..+.+++    .|....+.+..  .|+    +++  
T Consensus        55 ~~~~~l~~G~~vLDiGcGw-G~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~--~D~----~~~--  124 (273)
T PF02353_consen   55 CEKLGLKPGDRVLDIGCGW-GGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRL--QDY----RDL--  124 (273)
T ss_dssp             HTTTT--TT-EEEEES-TT-SHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE--S-G----GG---
T ss_pred             HHHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE--eec----ccc--
Confidence            4668999999999999875 7788899999999 79999999988887753    45321111100  122    112  


Q ss_pred             hcCCCccEEEE-----ccCC---hHHHHHHHHhhcCCCEEEEe
Q 020928          205 AMGSGIDVSFD-----CVGF---DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       205 ~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~G~~v~~  239 (319)
                        ...+|.|+.     .+|.   +..+..+.+.|+|+|+++.-
T Consensus       125 --~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  125 --PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             --CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence              237888753     4442   24578888999999998743

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.93  E-value=0.022  Score=48.72  Aligned_cols=107  Identities=22%  Similarity=0.254  Sum_probs=63.9

Q ss_pred             CCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eecc--C-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKV--S-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G~-g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~--~-~~~~~~~~~i~~~~~~~  206 (319)
                      .++.|+|.|| +++|.++..-.-..|++.+.+ .+..++++.+    ++.+... ++.+  + ++.++....+.++.. .
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lv-ar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~-~   88 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLV-ARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR-H   88 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEe-ehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH-h
Confidence            4678899995 999977777666678854444 4555555554    4444433 3222  1 222233333332222 3


Q ss_pred             CCCccEEEEccCCh-------------------------HHHHHHHHhhcCC--CEEEEecccCC
Q 020928          207 GSGIDVSFDCVGFD-------------------------KTMSTALNATRPG--GKVCLIGLAKT  244 (319)
Q Consensus       207 ~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~--G~~v~~g~~~~  244 (319)
                      -+++|+.+++.|-.                         ...+.++++|+..  |+++.+++...
T Consensus        89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG  153 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAG  153 (282)
T ss_pred             cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccc
Confidence            56899999998863                         1345666777443  99999886443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=96.93  E-value=0.011  Score=53.50  Aligned_cols=99  Identities=18%  Similarity=0.306  Sum_probs=69.0

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCC
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      +..+++++++||.+|+|. |..++.+++..|+ .|++++.+++..+.+++......+.+.  ..++    ..+    .+.
T Consensus       161 ~~l~l~~g~rVLDIGcG~-G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~--~~D~----~~l----~~~  228 (383)
T PRK11705        161 RKLQLKPGMRVLDIGCGW-GGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIR--LQDY----RDL----NGQ  228 (383)
T ss_pred             HHhCCCCCCEEEEeCCCc-cHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEE--ECch----hhc----CCC
Confidence            557889999999999875 7788899998888 799999999999988874321111111  1121    111    346


Q ss_pred             ccEEEEc-----cCC---hHHHHHHHHhhcCCCEEEEec
Q 020928          210 IDVSFDC-----VGF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       210 ~d~v~d~-----~g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +|.|+..     +|.   +..++.+.+.|+|+|+++...
T Consensus       229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            8988643     332   246778888999999988654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.90  E-value=0.018  Score=46.59  Aligned_cols=101  Identities=19%  Similarity=0.280  Sum_probs=58.9

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      ..++++++||.+|+|+-++ +..+++.. +..+|++++.++..    +..+.. .+..+.........+.+..  .+.++
T Consensus        28 ~~i~~g~~VLDiG~GtG~~-~~~l~~~~~~~~~v~~vDis~~~----~~~~i~-~~~~d~~~~~~~~~l~~~~--~~~~~   99 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGW-SQVAVEQVGGKGRVIAVDLQPMK----PIENVD-FIRGDFTDEEVLNKIRERV--GDDKV   99 (188)
T ss_pred             cccCCCCEEEEecCCCCHH-HHHHHHHhCCCceEEEEeccccc----cCCCce-EEEeeCCChhHHHHHHHHh--CCCCc
Confidence            5679999999999887444 44444443 44479999988754    112222 2211111112112222111  24579


Q ss_pred             cEEEEc-----cCC------------hHHHHHHHHhhcCCCEEEEec
Q 020928          211 DVSFDC-----VGF------------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       211 d~v~d~-----~g~------------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |+|+..     .|.            ...+..+.+.|+++|+++...
T Consensus       100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438       100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            999952     121            246777889999999998753

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.85  E-value=0.018  Score=46.49  Aligned_cols=98  Identities=18%  Similarity=0.243  Sum_probs=63.7

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++.+||-+|+|. |..++.+++......|++++.+++..+.+++    .+.+.+.....   +.    .++..  ..
T Consensus        42 ~l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~---d~----~~~~~--~~  111 (187)
T PRK00107         42 YLPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG---RA----EEFGQ--EE  111 (187)
T ss_pred             hcCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec---cH----hhCCC--CC
Confidence            356689999999876 7777777775544489999999877665553    44433211111   11    11211  34


Q ss_pred             CccEEEEccCC--hHHHHHHHHhhcCCCEEEEec
Q 020928          209 GIDVSFDCVGF--DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       209 ~~d~v~d~~g~--~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+|+|+-....  +..+..+.+.|+++|+++.+-
T Consensus       112 ~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        112 KFDVVTSRAVASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             CccEEEEccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            79999864332  246778889999999998773

>PRK12742 oxidoreductase; Provisional

Probab=96.81  E-value=0.035  Score=46.43  Aligned_cols=100  Identities=20%  Similarity=0.279  Sum_probs=59.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEec-CChhHHH-HHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLS-IARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~-~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      +++++||+| +|.+|..+++.+...|+ .|+.+. +++++.+ +.++++... +..+..  +. +.+.++.+. .+++|+
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~-~~~D~~--~~-~~~~~~~~~-~~~id~   78 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATA-VQTDSA--DR-DAVIDVVRK-SGALDI   78 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeE-EecCCC--CH-HHHHHHHHH-hCCCcE
Confidence            467999998 59999999998888998 455543 3444433 334455432 222221  21 122223222 246899


Q ss_pred             EEEccCChH-------------------------HHHHHHHhhcCCCEEEEecc
Q 020928          213 SFDCVGFDK-------------------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       213 v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +|++.|...                         ....+.+.+...|+++.++.
T Consensus        79 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  132 (237)
T PRK12742         79 LVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGS  132 (237)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            999987520                         11344455667789998875

>PRK08017 oxidoreductase; Provisional

Probab=96.81  E-value=0.012  Score=49.99  Aligned_cols=80  Identities=21%  Similarity=0.317  Sum_probs=52.5

Q ss_pred             CeEEEECC-CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEee-ccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          138 TNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA-KVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       138 ~~vlI~G~-g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      ++++|+|+ |.+|..+++.+...|. .|++++++.++.+.+++.+...+. ++ ....+....+..+....++.+|.++.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~~~~~~ii~   80 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDL-DDPESVERAADEVIALTDNRLYGLFN   80 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeec-CCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            57999985 9999999999888898 688888888887777766654322 22 11122222233332222356888888


Q ss_pred             ccCC
Q 020928          216 CVGF  219 (319)
Q Consensus       216 ~~g~  219 (319)
                      +.|.
T Consensus        81 ~ag~   84 (256)
T PRK08017         81 NAGF   84 (256)
T ss_pred             CCCC
Confidence            8764

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=96.79  E-value=0.012  Score=47.26  Aligned_cols=82  Identities=21%  Similarity=0.299  Sum_probs=55.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC---CEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA---DETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .|.+|||.| ++++|+...+-...+|- .|++..+++++++.++....   ..+-|+. +.....+.+..+.+ .-...+
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~-d~~~~~~lvewLkk-~~P~lN   80 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVA-DRDSRRELVEWLKK-EYPNLN   80 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeeccc-chhhHHHHHHHHHh-hCCchh
Confidence            478999996 79999999998888896 78999999999998887442   2233321 11122222223333 234688


Q ss_pred             EEEEccCCh
Q 020928          212 VSFDCVGFD  220 (319)
Q Consensus       212 ~v~d~~g~~  220 (319)
                      +++++.|-.
T Consensus        81 vliNNAGIq   89 (245)
T COG3967          81 VLINNAGIQ   89 (245)
T ss_pred             eeeeccccc
Confidence            999888863

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.79  E-value=0.034  Score=51.58  Aligned_cols=81  Identities=16%  Similarity=0.259  Sum_probs=48.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh--H-HHHHHHcCCCEe-eccCCCCcchhHHHHHhhhhcCCCc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ--R-LSIARNLGADET-AKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~--~-~~~~~~~g~~~v-~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      ++.++||+| +|.+|..+++.+...|+ +|+.+++.+.  . .+..++++...+ .|+ .+..+....+..+.+. .+++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv-~~~~~~~~~~~~~~~~-~g~i  285 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDI-TAPDAPARIAEHLAER-HGGL  285 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeC-CCHHHHHHHHHHHHHh-CCCC
Confidence            468899998 59999999998888998 5777665332  2 233344554322 222 1222222233333222 3479


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |++|++.|.
T Consensus       286 d~vi~~AG~  294 (450)
T PRK08261        286 DIVVHNAGI  294 (450)
T ss_pred             CEEEECCCc
Confidence            999999983

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.76  E-value=0.056  Score=43.98  Aligned_cols=104  Identities=13%  Similarity=0.280  Sum_probs=63.3

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      +...+++++++||=.|+|. |..++.+++......|++++.+++..+.+++    ++...+....   .+..+.+..+  
T Consensus        33 ~~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~---~d~~~~~~~~--  106 (196)
T PRK07402         33 ISQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIE---GSAPECLAQL--  106 (196)
T ss_pred             HHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE---CchHHHHhhC--
Confidence            3456788899988888765 6566677766533489999999988776654    4543322111   1222222111  


Q ss_pred             hcCCCccE-EEEccCC-hHHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDV-SFDCVGF-DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~-v~d~~g~-~~~~~~~~~~l~~~G~~v~~g  240 (319)
                        ...+|. .++.... ...++.+.+.|+++|+++...
T Consensus       107 --~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~  142 (196)
T PRK07402        107 --APAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATA  142 (196)
T ss_pred             --CCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence              122344 4443222 356788899999999988764

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.043  Score=45.82  Aligned_cols=81  Identities=20%  Similarity=0.207  Sum_probs=48.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHH---cCCCEeeccCC-CCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARN---LGADETAKVST-DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~---~g~~~v~~~~~-~~~~~~~~i~~~~~~~~~~  209 (319)
                      ++.++||+| +|.+|..+++.+...|+ +|+.+++++++.+ .+++   .+... +..+- +.++....+.++.+.. ++
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~~~~~-~~   82 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRI-GGIDLVDPQAARRAVDEVNRQF-GR   82 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceE-EEeecCCHHHHHHHHHHHHHHh-CC
Confidence            367999998 59999999998888898 6888877665422 2222   22222 11111 1222223333333322 47


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|.+.|.
T Consensus        83 ~d~vi~~ag~   92 (239)
T PRK12828         83 LDALVNIAGA   92 (239)
T ss_pred             cCEEEECCcc
Confidence            8999998874

>PRK00811 spermidine synthase; Provisional

Probab=96.70  E-value=0.013  Score=50.73  Aligned_cols=98  Identities=16%  Similarity=0.150  Sum_probs=64.5

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC--------CEeeccCCCCcchhHHHHHhhhhc
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA--------DETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~--------~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      +++++||++|+|. |..+..+++..+..+|.+++.+++-.+.+++.-.        +.-+.+  ...|....+.    ..
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v--~~~Da~~~l~----~~  147 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVEL--VIGDGIKFVA----ET  147 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEE--EECchHHHHh----hC
Confidence            4578999999876 7777788887777789999999998888887321        100000  1123222222    23


Q ss_pred             CCCccEEEEccCC----------hHHHHHHHHhhcCCCEEEEe
Q 020928          207 GSGIDVSFDCVGF----------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       207 ~~~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ...+|+||--...          .+.++.+.+.|+++|.++.-
T Consensus       148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        148 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            4679998754321          23467788999999998864

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.015  Score=49.94  Aligned_cols=79  Identities=22%  Similarity=0.265  Sum_probs=52.4

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEe-eccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+...+...+ .|+ .+.++....+..+.+. .+++|++|+
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~~~~-~~~id~vi~   78 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDV-NDGAALARLAEELEAE-HGGLDVLIN   78 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeC-CCHHHHHHHHHHHHHh-cCCCCEEEE
Confidence            4789998 59999999998888898 68888888777666655554332 232 2222333333443332 357999999


Q ss_pred             ccCC
Q 020928          216 CVGF  219 (319)
Q Consensus       216 ~~g~  219 (319)
                      +.|.
T Consensus        79 ~ag~   82 (274)
T PRK05693         79 NAGY   82 (274)
T ss_pred             CCCC
Confidence            9984

>PRK04457 spermidine synthase; Provisional

Probab=96.68  E-value=0.029  Score=48.00  Aligned_cols=97  Identities=18%  Similarity=0.174  Sum_probs=65.4

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc-CCCE---eeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL-GADE---TAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~-g~~~---v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      +++++||++|+|+ |..+..+++.....++.+++.+++-.+.+++. +...   -+.+  ...|..+.+.+    ....+
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v--~~~Da~~~l~~----~~~~y  137 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEV--IEADGAEYIAV----HRHST  137 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEE--EECCHHHHHHh----CCCCC
Confidence            4567899999877 88888888877555899999999999988874 3211   0111  11233333322    23578


Q ss_pred             cEEE-EccCC---------hHHHHHHHHhhcCCCEEEE
Q 020928          211 DVSF-DCVGF---------DKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       211 d~v~-d~~g~---------~~~~~~~~~~l~~~G~~v~  238 (319)
                      |+|+ |...+         .+.++.+.+.|+++|.++.
T Consensus       138 D~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi  175 (262)
T PRK04457        138 DVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV  175 (262)
T ss_pred             CEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence            9985 43222         3578889999999999876

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.057  Score=46.02  Aligned_cols=104  Identities=21%  Similarity=0.266  Sum_probs=63.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCCE-eeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .+.+++|+| +|.+|..++..+...|+ .|+.+++++++.+ ..++++... .+..+ .+.++....+.++.+.. +.+|
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~id   82 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARF-GRVD   82 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHh-CCCC
Confidence            467899998 59999999998888898 6888888776544 334444221 11112 12223333444443322 4689


Q ss_pred             EEEEccCCh---------H---------------HHHHHHHhh-cCCCEEEEecc
Q 020928          212 VSFDCVGFD---------K---------------TMSTALNAT-RPGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~---------~---------------~~~~~~~~l-~~~G~~v~~g~  241 (319)
                      +++.+.|..         +               ..+.+.+.+ +.+|+++.++.
T Consensus        83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS  137 (261)
T PRK08265         83 ILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTS  137 (261)
T ss_pred             EEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            999988741         0               123334444 56789988874

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.63  E-value=0.017  Score=49.33  Aligned_cols=131  Identities=15%  Similarity=0.220  Sum_probs=86.5

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC---------CCcchhHHHHHhhhh
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST---------DIEDVDTDVGKIQNA  205 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~---------~~~~~~~~i~~~~~~  205 (319)
                      -++.++++.|.|.+|+.++..++..|+ .|-.-+....+.+..+++|+...-.-+.         -+++|...-.++...
T Consensus       162 v~pA~vlv~G~Gvagl~aiata~~lG~-iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~  240 (356)
T COG3288         162 VSPAKVLVIGAGVAGLAAIATAVRLGA-IVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE  240 (356)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHhhcce-EEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence            356778999999999999999999999 6666677777888888888644321111         112332222223333


Q ss_pred             cCCCccEEEEccCCh------HHHHHHHHhhcCCCEEEEecccC-Cccc--ccchHHHhcCcEEEEeecc
Q 020928          206 MGSGIDVSFDCVGFD------KTMSTALNATRPGGKVCLIGLAK-TEMT--VALTPAAAREVDVIGIFRY  266 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~------~~~~~~~~~l~~~G~~v~~g~~~-~~~~--~~~~~~~~~~~~i~~~~~~  266 (319)
                      .-.++|+||-+.--|      -....+...|+|++.++.+.... ..-.  -+-.-...++++|+|....
T Consensus       241 ~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~nl  310 (356)
T COG3288         241 QAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYTNL  310 (356)
T ss_pred             HhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCcccccCCeEEEeCCeEEEeecCc
Confidence            456899999876553      24567889999999999886422 1111  1113345678999998765

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=96.56  E-value=0.11  Score=44.85  Aligned_cols=60  Identities=27%  Similarity=0.355  Sum_probs=46.8

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEec--CChhHHHHHHHcCCCEeec
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAK  187 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~--~~~~~~~~~~~~g~~~v~~  187 (319)
                      +.+++.+++|.+|+---+|+.|.+...+|+.+|++.++++.  -++++..+++.+|+.-+..
T Consensus        53 Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t  114 (300)
T COG0031          53 AEKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILT  114 (300)
T ss_pred             HHHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEc
Confidence            34557799999655544799999999999999997666663  4778999999999876543

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.56  E-value=0.033  Score=46.47  Aligned_cols=107  Identities=21%  Similarity=0.331  Sum_probs=72.3

Q ss_pred             HHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHH
Q 020928          126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVG  200 (319)
Q Consensus       126 ~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~  200 (319)
                      .+.+.+.++.+|++|+-.|+|+ |.++.-||+..|. -+|+..+..++..+.+++    ++....+..  ...|..+.+ 
T Consensus        84 ~~I~~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~--~~~Dv~~~~-  159 (256)
T COG2519          84 GYIVARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL--KLGDVREGI-  159 (256)
T ss_pred             HHHHHHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE--Eeccccccc-
Confidence            3445678999999999999887 8888899987775 478888888776665544    443332211  112222211 


Q ss_pred             HhhhhcCCCccEEEEccCC-hHHHHHHHHhhcCCCEEEEecc
Q 020928          201 KIQNAMGSGIDVSFDCVGF-DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       201 ~~~~~~~~~~d~v~d~~g~-~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                           .+..+|.+|=-... .+.++.+.+.|.++|.++.+..
T Consensus       160 -----~~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P  196 (256)
T COG2519         160 -----DEEDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSP  196 (256)
T ss_pred             -----cccccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence                 13478887544443 3678889999999999998753

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.059  Score=45.39  Aligned_cols=82  Identities=15%  Similarity=0.127  Sum_probs=49.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HH---cCCC-EeeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RN---LGAD-ETAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~---~g~~-~v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      ++.+++|+| +|.+|..++..+...|. +++.+++++++.+.+ ++   .+.. ..+..+-. .++....+.++.+. -+
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~   83 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAA-LG   83 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH-cC
Confidence            468899998 59999999998888898 677777776654433 22   2322 12221221 12222223333222 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|.+.|.
T Consensus        84 ~id~vi~~ag~   94 (250)
T PRK12939         84 GLDGLVNNAGI   94 (250)
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.55  E-value=0.025  Score=48.04  Aligned_cols=81  Identities=21%  Similarity=0.306  Sum_probs=50.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeeccCCC-CcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVSTD-IEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~~~-~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      ++++++|+| +|.+|..+++.+...|+ .|+.+++++.+.+.+ ++++.. .+..+-. .++....+.++.+. .+++|+
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~-~~~id~   82 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGL-FVPTDVTDEDAVNALFDTAAET-YGSVDI   82 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCc-EEEeeCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            468999998 59999999998888898 677777777665443 344432 2222221 22233333333322 246899


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      +|.+.|.
T Consensus        83 vi~~ag~   89 (255)
T PRK06057         83 AFNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998874

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.55  E-value=0.065  Score=44.75  Aligned_cols=82  Identities=29%  Similarity=0.278  Sum_probs=49.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCC---CEeeccC-CCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA---DETAKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~---~~v~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      .+.+++|+| +|.+|..+++.+...|+ .|+++++++++.+.+ +++..   .+.+..+ .+..++...+..+.+. ..+
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~   82 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAA-FGG   82 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHH-cCC
Confidence            467899998 59999999987777898 588888877655433 33321   1112112 1222333333333332 247


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|++.|.
T Consensus        83 ~d~vi~~ag~   92 (237)
T PRK07326         83 LDVLIANAGV   92 (237)
T ss_pred             CCEEEECCCC
Confidence            9999998764

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.54  E-value=0.064  Score=46.21  Aligned_cols=104  Identities=20%  Similarity=0.248  Sum_probs=63.2

Q ss_pred             CCCeEEEECC---CHHHHHHHHHHHHcCCCeEEEecCChh---HHH-HHHHcCCCEeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVDVQ---RLS-IARNLGADETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~---g~vG~~ai~la~~~g~~~vv~v~~~~~---~~~-~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+|+   +++|.++++.+...|+ +|+.+.++++   +.+ ..++++....+..+ .+.++....+.++.+. .
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~-~   81 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKD-L   81 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHH-c
Confidence            3678999985   5899999998888899 5666666642   222 22344533222222 2222333444444433 2


Q ss_pred             CCccEEEEccCCh--------------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD--------------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +.+|+++++.|..              +               ..+..++.|..+|+++.++.
T Consensus        82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS  144 (274)
T PRK08415         82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSY  144 (274)
T ss_pred             CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEec
Confidence            5799999998841              0               23456667777899988764

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.54  E-value=0.04  Score=44.11  Aligned_cols=91  Identities=14%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          140 VMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       140 vlI~G~-g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      |+|+|+ |.+|..+++.+...|. .|.++.+++++.+.  ..+... +..+..  +. +.+.+..    .++|.||.++|
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~-~~~d~~--d~-~~~~~al----~~~d~vi~~~~   69 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEI-IQGDLF--DP-DSVKAAL----KGADAVIHAAG   69 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEE-EESCTT--CH-HHHHHHH----TTSSEEEECCH
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--cccccc-ceeeeh--hh-hhhhhhh----hhcchhhhhhh
Confidence            688985 9999999999999997 78888898887766  333332 222222  22 2232222    37999999998


Q ss_pred             C----hHHHHHHHHhhcCCC--EEEEecc
Q 020928          219 F----DKTMSTALNATRPGG--KVCLIGL  241 (319)
Q Consensus       219 ~----~~~~~~~~~~l~~~G--~~v~~g~  241 (319)
                      .    ......+.+.++..|  +++.++.
T Consensus        70 ~~~~~~~~~~~~~~a~~~~~~~~~v~~s~   98 (183)
T PF13460_consen   70 PPPKDVDAAKNIIEAAKKAGVKRVVYLSS   98 (183)
T ss_dssp             STTTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred             hhcccccccccccccccccccccceeeec
Confidence            4    224555556554443  7777664

...

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.026  Score=50.09  Aligned_cols=82  Identities=32%  Similarity=0.408  Sum_probs=51.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+    ++.+... ++..+ ++.++....+.++.+ ..+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~-~~g   83 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS-FGG   83 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH-hcC
Confidence            467899998 59999999998888999 677788887765433    2345432 11111 122233333333332 235


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        84 ~iD~lVnnAG~   94 (330)
T PRK06139         84 RIDVWVNNVGV   94 (330)
T ss_pred             CCCEEEECCCc
Confidence            79999999984

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.50  E-value=0.079  Score=43.69  Aligned_cols=101  Identities=15%  Similarity=0.120  Sum_probs=63.7

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhh
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      .+...+++++.+||-+|+|. |..+..+++..+  .+++++.+++..+.+++    .+...+.....   +....   +.
T Consensus        70 l~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~---~~  140 (212)
T PRK00312         70 MTELLELKPGDRVLEIGTGS-GYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG---DGWKG---WP  140 (212)
T ss_pred             HHHhcCCCCCCEEEEECCCc-cHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC---CcccC---CC
Confidence            34557789999999998766 656666666643  78999988877665544    34332211111   11110   11


Q ss_pred             hhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                        ....+|.|+-...-......+.+.|+++|+++..
T Consensus       141 --~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        141 --AYAPFDRILVTAAAPEIPRALLEQLKEGGILVAP  174 (212)
T ss_pred             --cCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEE
Confidence              1246999876554445667788999999998754

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.48  E-value=0.057  Score=45.14  Aligned_cols=107  Identities=21%  Similarity=0.400  Sum_probs=74.3

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      ..+.++|++||=.|+|. |-.++.+++..|-..|+++|.+++-++.+++-    +... +.+...      ....+. -.
T Consensus        46 ~~~~~~g~~vLDva~GT-Gd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~------dAe~LP-f~  116 (238)
T COG2226          46 LLGIKPGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVG------DAENLP-FP  116 (238)
T ss_pred             hhCCCCCCEEEEecCCc-cHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEe------chhhCC-CC
Confidence            35667999999887776 88999999999866899999999988877762    2111 111111      111111 12


Q ss_pred             CCCccEEEEccCC------hHHHHHHHHhhcCCCEEEEecccCCcc
Q 020928          207 GSGIDVSFDCVGF------DKTMSTALNATRPGGKVCLIGLAKTEM  246 (319)
Q Consensus       207 ~~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g~~~~~~  246 (319)
                      ++.||+|.-+.|-      +..+.++.+.|+|+|+++.+.......
T Consensus       117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~  162 (238)
T COG2226         117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN  162 (238)
T ss_pred             CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence            5678888666554      246889999999999999988665443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.48  E-value=0.014  Score=49.99  Aligned_cols=97  Identities=16%  Similarity=0.296  Sum_probs=70.5

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      ++.+|.|+|.|.+|.-+..+|..+|+ .|.+.+.+..|++.++.+....+..+.+...    .+++..    .+.|++|.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st~~----~iee~v----~~aDlvIg  237 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYSTPS----NIEEAV----KKADLVIG  237 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcCHH----HHHHHh----hhccEEEE
Confidence            34567888999999999999999999 6889999999999988855444433322222    222221    36889988


Q ss_pred             ccCCh------HHHHHHHHhhcCCCEEEEecc
Q 020928          216 CVGFD------KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       216 ~~g~~------~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ++=.+      -..+++.+.|++++.++.+..
T Consensus       238 aVLIpgakaPkLvt~e~vk~MkpGsVivDVAi  269 (371)
T COG0686         238 AVLIPGAKAPKLVTREMVKQMKPGSVIVDVAI  269 (371)
T ss_pred             EEEecCCCCceehhHHHHHhcCCCcEEEEEEE
Confidence            76443      246788999999999998863

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.031  Score=47.37  Aligned_cols=83  Identities=18%  Similarity=0.324  Sum_probs=52.3

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c---CC-CEeeccCC-CCcchhHHHHHhhhhcC
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L---GA-DETAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~---g~-~~v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      -.+++++|+| +|.+|..++..+...|+ .|+.+.+++++.+.+.+ +   +. ...+..+- +.++....+.++.+. .
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~   84 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETE-A   84 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh-c
Confidence            3478999998 59999999998888898 68888887776544332 1   21 12222221 222333333333332 3


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +.+|++|++.|.
T Consensus        85 ~~~d~li~~ag~   96 (258)
T PRK06949         85 GTIDILVNNSGV   96 (258)
T ss_pred             CCCCEEEECCCC
Confidence            578999999984

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.47  E-value=0.099  Score=40.78  Aligned_cols=104  Identities=20%  Similarity=0.234  Sum_probs=65.0

Q ss_pred             HHHHHHh--cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHh
Q 020928          125 GVHACRR--ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       125 a~~~l~~--~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      .+.++.+  ...-.|++++|+|=|-+|...++.++.+|+ +|++++..+-+.-.+..-|... ..           +.+.
T Consensus         9 ~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~v-~~-----------~~~a   75 (162)
T PF00670_consen    9 LVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFEV-MT-----------LEEA   75 (162)
T ss_dssp             HHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-EE-E------------HHHH
T ss_pred             HHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcEe-cC-----------HHHH
Confidence            3445433  345678999999999999999999999999 8999998887665555445432 11           1111


Q ss_pred             hhhcCCCccEEEEccCChHH-HHHHHHhhcCCCEEEEecccCCc
Q 020928          203 QNAMGSGIDVSFDCVGFDKT-MSTALNATRPGGKVCLIGLAKTE  245 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~G~~v~~g~~~~~  245 (319)
                          -...|++|.+.|.... ..+.++.|+++..+...|....+
T Consensus        76 ----~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~E  115 (162)
T PF00670_consen   76 ----LRDADIFVTATGNKDVITGEHFRQMKDGAILANAGHFDVE  115 (162)
T ss_dssp             ----TTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTS
T ss_pred             ----HhhCCEEEECCCCccccCHHHHHHhcCCeEEeccCcCcee
Confidence                2357999999998653 35778889999877777754433

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.064  Score=45.60  Aligned_cols=81  Identities=28%  Similarity=0.371  Sum_probs=49.8

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cC-C-CEeeccC-CCCcchhHHHHHhhhhcCCCccE
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LG-A-DETAKVS-TDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g-~-~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      +++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+.+ .+ . ...+..+ .+..+..+.+..+.+...+++|+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~   80 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV   80 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence            4789998 59999999998888898 67788787776554433 32 1 1122112 12223333333333222457999


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      ++.+.|.
T Consensus        81 vi~~ag~   87 (260)
T PRK08267         81 LFNNAGI   87 (260)
T ss_pred             EEECCCC
Confidence            9999885

>PRK04148 hypothetical protein; Provisional

Probab=96.45  E-value=0.1  Score=39.44  Aligned_cols=94  Identities=12%  Similarity=0.155  Sum_probs=62.5

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      ..++.+++++|.| .|......+...|. .|+++|.+++..+.+++.+.+.+.+ +-.+++.  .   +    -.++|++
T Consensus        14 ~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~d-Dlf~p~~--~---~----y~~a~li   81 (134)
T PRK04148         14 KGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVD-DLFNPNL--E---I----YKNAKLI   81 (134)
T ss_pred             cccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEEC-cCCCCCH--H---H----HhcCCEE
Confidence            3456889999998 78755555557798 8999999999999998887655443 1111111  1   1    2468999


Q ss_pred             EEccCChHHHHHHHHhhcCC-CEEEEe
Q 020928          214 FDCVGFDKTMSTALNATRPG-GKVCLI  239 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~~~-G~~v~~  239 (319)
                      +..-..++....+.+.-+.- ..++..
T Consensus        82 ysirpp~el~~~~~~la~~~~~~~~i~  108 (134)
T PRK04148         82 YSIRPPRDLQPFILELAKKINVPLIIK  108 (134)
T ss_pred             EEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            98888877776666655433 334433

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.45  E-value=0.054  Score=51.11  Aligned_cols=46  Identities=20%  Similarity=0.256  Sum_probs=37.5

Q ss_pred             HhcCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH
Q 020928          130 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  176 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~  176 (319)
                      ...+.+.++++||+| +|.+|..+++.+...|+ .|+++.++.++.+.
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~  119 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAES  119 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            347788999999998 59999999998888898 67777787776543

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.1  Score=43.91  Aligned_cols=104  Identities=19%  Similarity=0.238  Sum_probs=58.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh-hHHH-HH---HHcCCC-EeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV-QRLS-IA---RNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~-~~~~-~~---~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      ++.++||+| +|.+|..++..+...|. .|+.+.++. ++.+ +.   +..+.. ..+..+ .+.++....+.++.+. .
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~   82 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE-F   82 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh-C
Confidence            357899998 59999999998888898 566665543 2222 22   222321 111112 1222223333333322 2


Q ss_pred             CCccEEEEccCCh-------------------HHHHHHHHhhcCCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD-------------------KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~-------------------~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .++|+++.+.|..                   ..++.+.+.+...|+++.++.
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            4689998887642                   134455555566788887764

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.078  Score=47.11  Aligned_cols=82  Identities=21%  Similarity=0.267  Sum_probs=50.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEe-eccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADET-AKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      ++.+++|+| +|++|..+++.+...|+ .|+.+++++++.+.+    ++.|.... +..+ .+.++....+..+.+.. +
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~-g   84 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL-G   84 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC-C
Confidence            457899998 59999999998888898 677777877665433    23343221 1111 12223333333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|++|++.|.
T Consensus        85 ~iD~lInnAg~   95 (334)
T PRK07109         85 PIDTWVNNAMV   95 (334)
T ss_pred             CCCEEEECCCc
Confidence            79999999885

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.083  Score=45.13  Aligned_cols=81  Identities=21%  Similarity=0.221  Sum_probs=50.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c----CCC-EeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L----GAD-ETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~----g~~-~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||.| ++++|.++++.+...|+ +|+.+++++++.+.+.+ +    +.. ..+..+ .+.++....+.++. . -
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~-~-~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK-N-I   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH-h-h
Confidence            467899998 59999999998888998 67778887766543332 2    221 112212 12223333333332 1 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus        84 g~iD~lv~nag~   95 (263)
T PRK08339         84 GEPDIFFFSTGG   95 (263)
T ss_pred             CCCcEEEECCCC
Confidence            469999999875

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.35  E-value=0.12  Score=42.37  Aligned_cols=93  Identities=15%  Similarity=0.149  Sum_probs=58.4

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChh-HHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ-RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .+.+|||+|+|.+|..-++.+...|+ .|.+++.... ..+.+.+.+--..+.  .   ++...  .     -.++++||
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~~--~---~~~~~--d-----l~~~~lVi   74 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWLA--R---CFDAD--I-----LEGAFLVI   74 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEEe--C---CCCHH--H-----hCCcEEEE
Confidence            36799999999999999999999998 5666654332 222222333111111  1   11111  1     14689999


Q ss_pred             EccCChHHHHHHHHhhcCCCEEEEecc
Q 020928          215 DCVGFDKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      -+.+.++.-..+....+..|.++.+-.
T Consensus        75 ~at~d~~ln~~i~~~a~~~~ilvn~~d  101 (205)
T TIGR01470        75 AATDDEELNRRVAHAARARGVPVNVVD  101 (205)
T ss_pred             ECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            999987666667666777787776543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.33  E-value=0.072  Score=44.00  Aligned_cols=105  Identities=17%  Similarity=0.166  Sum_probs=64.0

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeec-------cCCCCcc-hhHHHHHhhh
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAK-------VSTDIED-VDTDVGKIQN  204 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~-------~~~~~~~-~~~~i~~~~~  204 (319)
                      .+++.+||+.|+|. |.-++.||. .|. .|++++.++...+.+ ++.+......       +....-+ ....+-++..
T Consensus        32 ~~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        32 LPAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            36778999999988 889988986 698 799999999987764 3333211000       0000000 0001111111


Q ss_pred             hcCCCccEEEEccCC--------hHHHHHHHHhhcCCCEEEEecc
Q 020928          205 AMGSGIDVSFDCVGF--------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .....+|.++|...-        ...++.+.++|+|+|+++....
T Consensus       109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            012468999996531        2357789999999998766654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00536 speE spermidine synthase; Provisional

Probab=96.33  E-value=0.026  Score=47.96  Aligned_cols=101  Identities=6%  Similarity=-0.144  Sum_probs=66.1

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      -++.++|||+|+|- |-++-.++|.-.  +|+.++-.++-.++.+++-....-.++..+-....   .+.+.....+|+|
T Consensus        70 h~~pk~VLIiGGGD-Gg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~---~~~~~~~~~fDVI  143 (262)
T PRK00536         70 KKELKEVLIVDGFD-LELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLLDLDIKKYDLI  143 (262)
T ss_pred             CCCCCeEEEEcCCc-hHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee---hhhhccCCcCCEE
Confidence            46679999998766 667788888753  79999999999999888321100011111111111   1222223579996


Q ss_pred             -EEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          214 -FDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       214 -~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                       +|+.-.++....+.++|+++|.++.=+
T Consensus       144 IvDs~~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        144 ICLQEPDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             EEcCCCChHHHHHHHHhcCCCcEEEECC
Confidence             565666778889999999999887643

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.32  E-value=0.017  Score=49.58  Aligned_cols=45  Identities=22%  Similarity=0.296  Sum_probs=39.3

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  179 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~  179 (319)
                      .++++++|.|+|+.+.+++.-+...|++++.++.++.+|.+.+.+
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            357999999999999999999999999899999998888665554

>PLN02366 spermidine synthase

Probab=96.32  E-value=0.046  Score=47.81  Aligned_cols=102  Identities=22%  Similarity=0.234  Sum_probs=64.2

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCE--eec---cCCCCcchhHHHHHhhhhcCC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE--TAK---VSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~--v~~---~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      .+++++||++|+|. |.++..+++.-+..+|.+++.+++-.+.+++.-...  ..+   +.-...|....+++.   .++
T Consensus        89 ~~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~---~~~  164 (308)
T PLN02366         89 IPNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA---PEG  164 (308)
T ss_pred             CCCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc---cCC
Confidence            45678999998776 667778888777668999999988888887732110  000   000011222222211   245


Q ss_pred             CccEEEEccCC----------hHHHHHHHHhhcCCCEEEEe
Q 020928          209 GIDVSFDCVGF----------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       209 ~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      .+|+||--...          .+.++.+.++|+++|.++.-
T Consensus       165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            79998653332          24578889999999998753

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.32  E-value=0.11  Score=43.70  Aligned_cols=82  Identities=20%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcC--CC-EeeccC-CCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG--AD-ETAKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g--~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      ++.++||+| +|.+|..+++.+...|. .|+.+++++++.+.+ ..+.  .. ..+..+ .+.+++...+.++... ...
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~   81 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALER-FGS   81 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-hCC
Confidence            456899998 59999999988888898 588888887665443 2232  11 111111 1122333333333222 246


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|.+|.+.|.
T Consensus        82 ~d~vi~~ag~   91 (251)
T PRK07231         82 VDILVNNAGT   91 (251)
T ss_pred             CCEEEECCCC
Confidence            9999999875

>TIGR00417 speE spermidine synthase

Probab=96.31  E-value=0.046  Score=47.00  Aligned_cols=102  Identities=14%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC-CC-Eeec---cCCCCcchhHHHHHhhhhcCC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-AD-ETAK---VSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g-~~-~v~~---~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.+++||++|+|. |..+..+++......+.+++.+++-.+.+++.- .. ....   .+-...|....+++    ...
T Consensus        70 ~~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----~~~  144 (270)
T TIGR00417        70 HPNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----TEN  144 (270)
T ss_pred             CCCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----CCC
Confidence            34556999998766 556667777665668999999988877777632 10 0000   00001222222222    245


Q ss_pred             CccEEEEccC----------ChHHHHHHHHhhcCCCEEEEec
Q 020928          209 GIDVSFDCVG----------FDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       209 ~~d~v~d~~g----------~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+|+|+-...          ..+.++.+.+.|+++|.++...
T Consensus       145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             CccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            7999864332          1245678889999999998753

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02823 spermine synthase

Probab=96.30  E-value=0.065  Score=47.43  Aligned_cols=99  Identities=17%  Similarity=0.233  Sum_probs=62.3

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC-CE-eec---cCCCCcchhHHHHHhhhhcCCC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA-DE-TAK---VSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~-~~-v~~---~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      +..++|||+|.|. |.++..+++..+..++++++-+++-.++++++-. .. ...   +.-...|....+    +.....
T Consensus       102 ~~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L----~~~~~~  176 (336)
T PLN02823        102 PNPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL----EKRDEK  176 (336)
T ss_pred             CCCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH----hhCCCC
Confidence            3567999998765 6667778887777789999999999999988431 11 000   000012222222    223567


Q ss_pred             ccEEEEccCC------------hHHHH-HHHHhhcCCCEEEE
Q 020928          210 IDVSFDCVGF------------DKTMS-TALNATRPGGKVCL  238 (319)
Q Consensus       210 ~d~v~d~~g~------------~~~~~-~~~~~l~~~G~~v~  238 (319)
                      +|+||--...            .+.++ .+.+.|+++|.++.
T Consensus       177 yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~  218 (336)
T PLN02823        177 FDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT  218 (336)
T ss_pred             ccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence            9998543211            23455 78889999998764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.29  E-value=0.085  Score=43.21  Aligned_cols=35  Identities=31%  Similarity=0.499  Sum_probs=30.7

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      ...+|+|+|+|++|..+++.+.+.|+.++..+|..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            34789999999999999999999999888888765

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.047  Score=46.61  Aligned_cols=82  Identities=18%  Similarity=0.258  Sum_probs=50.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c---CCC-EeeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L---GAD-ETAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~---g~~-~v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      ++.++||.| +|.+|..+++.+...|+ .|+.+++++++.+.+.+ +   +.. ..+..+-. .++....+.++.+.. +
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   86 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF-G   86 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            468899998 59999999998888899 78888887766543322 2   221 12222222 222222333333222 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        87 ~id~vi~~Ag~   97 (263)
T PRK07814         87 RLDIVVNNVGG   97 (263)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.047  Score=45.87  Aligned_cols=78  Identities=22%  Similarity=0.382  Sum_probs=50.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      ++.+++|+| +|.+|..+++.+...|. .|+.+++++++.+.+.+ .+.. .+..+-.  + .+.+.++.+. ..++|++
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~D~~--~-~~~v~~~~~~-~~~~d~v   81 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCE-PLRLDVG--D-DAAIRAALAA-AGAFDGL   81 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCe-EEEecCC--C-HHHHHHHHHH-hCCCCEE
Confidence            467899998 59999999999988998 68888887766554433 4432 2222222  1 1233333332 2468999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        82 i~~ag~   87 (245)
T PRK07060         82 VNCAGI   87 (245)
T ss_pred             EECCCC
Confidence            999985

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.24  E-value=0.066  Score=46.08  Aligned_cols=97  Identities=18%  Similarity=0.207  Sum_probs=64.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc-CCCEeeccCCC----CcchhHHHHHhhhhcCCCccE
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL-GADETAKVSTD----IEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~-g~~~v~~~~~~----~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      ++|||+|.|. |-.+-.+++.....++++++-.++-.++.+++ +....-..+..    ..|-.+.++    ....++|+
T Consensus        78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~----~~~~~fDv  152 (282)
T COG0421          78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR----DCEEKFDV  152 (282)
T ss_pred             CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH----hCCCcCCE
Confidence            6999997655 55777888888888999999999999999884 32221010111    112222222    23448999


Q ss_pred             EE-EccCC---------hHHHHHHHHhhcCCCEEEEe
Q 020928          213 SF-DCVGF---------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       213 v~-d~~g~---------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      || |+.-.         .+..+.+.++|+++|.++.-
T Consensus       153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            74 44333         35788999999999988765

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.23  E-value=0.066  Score=41.60  Aligned_cols=104  Identities=18%  Similarity=0.284  Sum_probs=62.0

Q ss_pred             HHHhcCC-CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HHHcCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          128 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       128 ~l~~~~~-~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      +++...+ .++.+++|+|+|.+|...++.+...|...+.+.++++++.+. .++++... +....  .+.    .+.   
T Consensus         9 a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-~~~~~--~~~----~~~---   78 (155)
T cd01065           9 ALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-IAIAY--LDL----EEL---   78 (155)
T ss_pred             HHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-cceee--cch----hhc---
Confidence            3444443 456889999999999999988888864478888888776554 45555321 00000  011    111   


Q ss_pred             cCCCccEEEEccCChHH----HHHHHHhhcCCCEEEEeccc
Q 020928          206 MGSGIDVSFDCVGFDKT----MSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~~~----~~~~~~~l~~~G~~v~~g~~  242 (319)
                       -.++|+|+.|++....    .......++++..++.++..
T Consensus        79 -~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~  118 (155)
T cd01065          79 -LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN  118 (155)
T ss_pred             -cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence             2468999999886521    11112345666666666543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK01581 speE spermidine synthase; Validated

Probab=96.22  E-value=0.074  Score=47.21  Aligned_cols=102  Identities=18%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC-CCE----ee---ccCCCCcchhHHHHHhhhh
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-ADE----TA---KVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g-~~~----v~---~~~~~~~~~~~~i~~~~~~  205 (319)
                      ....++|||+|+|. |.++..+++..+..+|++++.+++-.++++++. ...    ..   .+.-...|....+.    .
T Consensus       148 h~~PkrVLIIGgGd-G~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~----~  222 (374)
T PRK01581        148 VIDPKRVLILGGGD-GLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS----S  222 (374)
T ss_pred             CCCCCEEEEECCCH-HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH----h
Confidence            45567999999764 667777888766668999999999999988631 100    00   00000122222222    2


Q ss_pred             cCCCccEEEEccCC-----------hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVGF-----------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g~-----------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+||--...           .+.+..+.+.|+++|.++.-.
T Consensus       223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            34579998654322           235678889999999987654

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.22  E-value=0.12  Score=43.90  Aligned_cols=82  Identities=24%  Similarity=0.285  Sum_probs=49.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc---CCCE-eeccC-CCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL---GADE-TAKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~---g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      ++.++||.| +|.+|..+++.+...|+ .|+.+++++...+..+++   +... .+..+ .+.++....+.++.+. .+.
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~   84 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA-FGR   84 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH-cCC
Confidence            357899998 59999999998888898 677777765433333332   3221 11111 1222333344444332 246


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|+++.+.|.
T Consensus        85 id~lv~nAg~   94 (260)
T PRK12823         85 IDVLINNVGG   94 (260)
T ss_pred             CeEEEECCcc
Confidence            9999999873

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.055  Score=46.38  Aligned_cols=81  Identities=28%  Similarity=0.336  Sum_probs=50.8

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccEE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +.++||+| +|++|..+++.+...|+ .|+.+++++++.+.+ ++++....+..+ .+.+++...+..+.+.. +++|++
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~l   82 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADL-GPIDVL   82 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            56899998 59999999987778898 577777877765543 334412222222 12223333344443322 479999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      +++.|.
T Consensus        83 i~~ag~   88 (273)
T PRK07825         83 VNNAGV   88 (273)
T ss_pred             EECCCc
Confidence            999884

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.21  E-value=0.073  Score=48.60  Aligned_cols=74  Identities=15%  Similarity=0.324  Sum_probs=52.7

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .+.+++|+|+|.+|.+++..+...|+..+.++.++.++.+ ++.+++...++.+        +.+...    -..+|+||
T Consensus       180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~--------~~l~~~----l~~aDiVI  247 (414)
T PRK13940        180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYL--------SELPQL----IKKADIII  247 (414)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecH--------HHHHHH----hccCCEEE
Confidence            5678999999999999999999999888999999877654 4444542222221        122222    13589999


Q ss_pred             EccCChH
Q 020928          215 DCVGFDK  221 (319)
Q Consensus       215 d~~g~~~  221 (319)
                      +|++.+.
T Consensus       248 ~aT~a~~  254 (414)
T PRK13940        248 AAVNVLE  254 (414)
T ss_pred             ECcCCCC
Confidence            9999873

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.20  E-value=0.049  Score=46.82  Aligned_cols=82  Identities=23%  Similarity=0.283  Sum_probs=49.1

Q ss_pred             CCCeEEEECCC---HHHHHHHHHHHHcCCCeEEEecCChhHHH----HHHHcCCCEeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGSG---PIGLVTLLAARAFGAPRIIITDVDVQRLS----IARNLGADETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~g---~vG~~ai~la~~~g~~~vv~v~~~~~~~~----~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +++++||+|++   ++|.++.+.+...|+ +|+.+.++++..+    ..+++|....+..+ .+.++....+.++.+.. 
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~-   83 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKW-   83 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHh-
Confidence            46789999864   899999998888999 5666666543222    22334533222222 22233344444444332 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +.+|+++++.|.
T Consensus        84 g~iD~lVnnAG~   95 (271)
T PRK06505         84 GKLDFVVHAIGF   95 (271)
T ss_pred             CCCCEEEECCcc
Confidence            479999999883

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.20  E-value=0.037  Score=50.25  Aligned_cols=93  Identities=18%  Similarity=0.290  Sum_probs=57.3

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHH--cCC-CEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARN--LGA-DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~--~g~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      |+|+|+|.+|..+++.+...+-. .|++.+++.++.+.+.+  .+. ......+..  +. +.+.++.    .+.|+|++
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~--~~-~~l~~~~----~~~dvVin   73 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVN--DP-ESLAELL----RGCDVVIN   73 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TT--TH-HHHHHHH----TTSSEEEE
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecC--CH-HHHHHHH----hcCCEEEE
Confidence            68888899999999988876643 78999999998766654  221 111112211  21 2244443    35699999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEe
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      |+|.......+..++..+-.++..
T Consensus        74 ~~gp~~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   74 CAGPFFGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             -SSGGGHHHHHHHHHHHT-EEEES
T ss_pred             CCccchhHHHHHHHHHhCCCeecc
Confidence            999654455566677778888874

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.19  E-value=0.02  Score=45.46  Aligned_cols=100  Identities=19%  Similarity=0.310  Sum_probs=64.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeec-cCCC--------------CcchhHHHH
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK-VSTD--------------IEDVDTDVG  200 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~-~~~~--------------~~~~~~~i~  200 (319)
                      ++.+|+|+|+|.+|+.|+.+++.+|+ .+++.+...++.+..+..+...+.. +...              .......+.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            34789999999999999999999999 7999999999888888877655433 1111              111111222


Q ss_pred             HhhhhcCCCccEEEEccCCh------HHHHHHHHhhcCCCEEEEec
Q 020928          201 KIQNAMGSGIDVSFDCVGFD------KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       201 ~~~~~~~~~~d~v~d~~g~~------~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +..    ..+|++|.+.--+      -.....++.|+++..++.+.
T Consensus        98 ~~i----~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   98 EFI----APADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHH----HH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHH----hhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            221    2478887533211      12356778888888888775

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.06  Score=46.85  Aligned_cols=81  Identities=20%  Similarity=0.338  Sum_probs=50.1

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCC-CCcchhHHHHHhhhhcCCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVST-DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~  209 (319)
                      +.+++|+| +|++|..+++.+...|. .|+.+++++++.+.+.+    .+.. ..+..+- +.++....+..+.+.. +.
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~-g~  117 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRI-GG  117 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-CC
Confidence            47899998 59999999998888898 68888888766543322    2322 1222221 1223333333333322 47


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|+++++.|.
T Consensus       118 id~li~~AG~  127 (293)
T PRK05866        118 VDILINNAGR  127 (293)
T ss_pred             CCEEEECCCC
Confidence            9999999875

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.16  E-value=0.056  Score=47.42  Aligned_cols=91  Identities=25%  Similarity=0.350  Sum_probs=60.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      .+|.|+|+|.+|......++..|. ..|++.++++++.+.+++.|......  .   +..    +.    -...|+||.|
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~--~---~~~----~~----~~~aDvViia   73 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT--T---SAA----EA----VKGADLVILC   73 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec--C---CHH----HH----hcCCCEEEEC
Confidence            579999999999999998888885 36888899998888888877432110  0   111    11    1357999999


Q ss_pred             cCChH---HHHHHHHhhcCCCEEEEecc
Q 020928          217 VGFDK---TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       217 ~g~~~---~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +....   ....+...++++..++.++.
T Consensus        74 vp~~~~~~v~~~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         74 VPVGASGAVAAEIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence            88642   23333445667776666654

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.16  E-value=0.054  Score=46.14  Aligned_cols=104  Identities=16%  Similarity=0.240  Sum_probs=61.8

Q ss_pred             CCCeEEEECCC---HHHHHHHHHHHHcCCCeEEEecCChhHHH----HHHHcCCCEeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGSG---PIGLVTLLAARAFGAPRIIITDVDVQRLS----IARNLGADETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~g---~vG~~ai~la~~~g~~~vv~v~~~~~~~~----~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||.|++   ++|.++++.+...|+ .|+.++++++..+    ..++++....+..+ .+.++....+.++.+.. 
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-   86 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEW-   86 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHc-
Confidence            46789999853   899999988888898 5666666644322    22334432222222 22233333444444332 


Q ss_pred             CCccEEEEccCCh--------------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD--------------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +.+|+++++.|..              +               ..+.+++.|+.+|+++.++.
T Consensus        87 g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss  149 (258)
T PRK07533         87 GRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSY  149 (258)
T ss_pred             CCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            4799999988731              0               13445666777788887764

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.044  Score=45.53  Aligned_cols=78  Identities=19%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCC-cchhHHHHHhhhhcCCCccEEEE
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI-EDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+++|+| +|.+|...+..+...|. .|+.+++++++.+.+++++....+..+-.+ ++.......+   .+.++|++|.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~---~~~~id~vi~   77 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRL---QGQRFDLLFV   77 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHh---hcCCCCEEEE
Confidence            4688998 69999998888778898 788888877766555554322222222111 1222222222   2347999998


Q ss_pred             ccCC
Q 020928          216 CVGF  219 (319)
Q Consensus       216 ~~g~  219 (319)
                      +.|.
T Consensus        78 ~ag~   81 (225)
T PRK08177         78 NAGI   81 (225)
T ss_pred             cCcc
Confidence            8764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.15  E-value=0.045  Score=51.34  Aligned_cols=74  Identities=26%  Similarity=0.374  Sum_probs=52.8

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .+.++++|+|+|.|..|++++.+++..|+ .|++.+..+.+.+.++++|.... .. .+   ...   .+     ..+|+
T Consensus         8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~~-~~-~~---~~~---~l-----~~~D~   73 (488)
T PRK03369          8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVATV-ST-SD---AVQ---QI-----ADYAL   73 (488)
T ss_pred             cccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEEE-cC-cc---hHh---Hh-----hcCCE
Confidence            35678999999999999999999999998 68888877666666677776332 11 11   011   11     24689


Q ss_pred             EEEccCCh
Q 020928          213 SFDCVGFD  220 (319)
Q Consensus       213 v~d~~g~~  220 (319)
                      |+.+-|.+
T Consensus        74 VV~SpGi~   81 (488)
T PRK03369         74 VVTSPGFR   81 (488)
T ss_pred             EEECCCCC
Confidence            99888875

>PRK06484 short chain dehydrogenase; Validated

Probab=96.14  E-value=0.14  Score=48.36  Aligned_cols=104  Identities=24%  Similarity=0.331  Sum_probs=66.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCE-eeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| ++++|..+++.+...|+ .|+.+++++++.+.+.+ ++... .+..+ .+.++....+.++.+.. +.+|
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~id  345 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARW-GRLD  345 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHc-CCCC
Confidence            567889998 69999999998888898 68888887776665544 44322 12122 12223333444443322 4699


Q ss_pred             EEEEccCChH--------------------------HHHHHHHhhcCCCEEEEecc
Q 020928          212 VSFDCVGFDK--------------------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ++|++.|...                          ..+.+++.++.+|+++.++.
T Consensus       346 ~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS  401 (520)
T PRK06484        346 VLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGS  401 (520)
T ss_pred             EEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECc
Confidence            9999887420                          13444556667799998875

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.14  E-value=0.062  Score=45.78  Aligned_cols=82  Identities=21%  Similarity=0.248  Sum_probs=52.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCC-EeeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +++++||+| ++.+|..+++.+...|+ .|+.+++++++.+.+.+ ++.. ..+..+ .+.++....+.++.+. .+.+|
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~g~id   82 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA-FGKLD   82 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh-cCCCC
Confidence            467899998 59999999998888898 67778887776655543 3321 112111 1222333344444333 24699


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|++.|.
T Consensus        83 ~li~~ag~   90 (263)
T PRK06200         83 CFVGNAGI   90 (263)
T ss_pred             EEEECCCC
Confidence            99999873

>PRK07574 formate dehydrogenase; Provisional

Probab=96.14  E-value=0.13  Score=46.47  Aligned_cols=92  Identities=21%  Similarity=0.233  Sum_probs=62.7

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|+.+.+.++.+|. .|.+.+++....+..+.++...   +.    +    +.++.    ...|+|+-
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~~~---~~----~----l~ell----~~aDvV~l  254 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGLTY---HV----S----FDSLV----SVCDVVTI  254 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCcee---cC----C----HHHHh----hcCCEEEE
Confidence            46789999999999999999999999 7888887764444444444321   00    1    22222    35789888


Q ss_pred             ccCChHHH-----HHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFDKTM-----STALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~~~~-----~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +.......     ...+..|+++..++.++...
T Consensus       255 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~  287 (385)
T PRK07574        255 HCPLHPETEHLFDADVLSRMKRGSYLVNTARGK  287 (385)
T ss_pred             cCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCc
Confidence            77643222     34677889999888887543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.13  E-value=0.056  Score=44.10  Aligned_cols=97  Identities=18%  Similarity=0.273  Sum_probs=61.9

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      ..+..++.+||-+|+|. |..++.+|+. |. .|++++.+++..+.+++.    +...+.   ....++    .++.  .
T Consensus        25 ~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~---~~~~d~----~~~~--~   92 (197)
T PRK11207         25 AVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDNLH---TAVVDL----NNLT--F   92 (197)
T ss_pred             hcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCcce---EEecCh----hhCC--c
Confidence            34556778999999887 8888888875 76 799999999876666542    222111   000111    1111  1


Q ss_pred             CCCccEEEEccCC--------hHHHHHHHHhhcCCCEEEEe
Q 020928          207 GSGIDVSFDCVGF--------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       207 ~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ...+|+|+.+..-        ...+..+.+.|+++|.++.+
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            3469999875431        13567788899999996544

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.13  E-value=0.074  Score=44.82  Aligned_cols=82  Identities=18%  Similarity=0.284  Sum_probs=50.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      +++++||.| +|.+|..+++.+...|. +|+.+++++++.+.+    ++.+... .+..+-. .++..+.+..+.+. -+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~   81 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAED-FG   81 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence            467899998 59999999998888898 688888877654332    2233321 1222211 12222333333322 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|.+|.+.|.
T Consensus        82 ~id~vi~~ag~   92 (253)
T PRK08217         82 QLNGLINNAGI   92 (253)
T ss_pred             CCCEEEECCCc
Confidence            68999999873

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=96.12  E-value=0.032  Score=46.99  Aligned_cols=110  Identities=25%  Similarity=0.398  Sum_probs=66.4

Q ss_pred             HHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHH
Q 020928          127 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       127 ~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~  201 (319)
                      +.+...++.||++|+-.|+|+ |.+...|++..|-. +|+..+..+++.+.+++    .|....+....  .|....-  
T Consensus        31 ~I~~~l~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~--~Dv~~~g--  105 (247)
T PF08704_consen   31 YILMRLDIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHH--RDVCEEG--  105 (247)
T ss_dssp             HHHHHTT--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEE--S-GGCG---
T ss_pred             HHHHHcCCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEe--cceeccc--
Confidence            345678999999999998766 66777888876532 79999999988777654    45432222111  1221100  


Q ss_pred             hhhhcCCCccEEEEccCCh-HHHHHHHHhh-cCCCEEEEecc
Q 020928          202 IQNAMGSGIDVSFDCVGFD-KTMSTALNAT-RPGGKVCLIGL  241 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l-~~~G~~v~~g~  241 (319)
                      +.+.....+|.||=-+..+ ..+..+.+.| +++|+++.+.-
T Consensus       106 ~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP  147 (247)
T PF08704_consen  106 FDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSP  147 (247)
T ss_dssp             -STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred             ccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence            1011135688875444444 5788999999 89999998853

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.11  E-value=0.15  Score=45.06  Aligned_cols=101  Identities=11%  Similarity=0.113  Sum_probs=66.3

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHH-HHHcCCCeEEEecCChhHHHHH-HHc----CCCEeeccCCCCcchhHHHHH
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLA-ARAFGAPRIIITDVDVQRLSIA-RNL----GADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~l-a~~~g~~~vv~v~~~~~~~~~~-~~~----g~~~v~~~~~~~~~~~~~i~~  201 (319)
                      +.+...-+...+++|+|+|..|...+.. +...+++.|.+.++++++.+.+ +++    +.. +..+.    +..+    
T Consensus       118 a~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~----~~~~----  188 (325)
T PRK08618        118 ATKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVN----SADE----  188 (325)
T ss_pred             HHHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeC----CHHH----
Confidence            3344434567789999999999776654 4567888899999988876543 333    322 11111    2111    


Q ss_pred             hhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      ..    .+.|+|+.|.++... -.. +.++++-.+..+|...
T Consensus       189 ~~----~~aDiVi~aT~s~~p-~i~-~~l~~G~hV~~iGs~~  224 (325)
T PRK08618        189 AI----EEADIIVTVTNAKTP-VFS-EKLKKGVHINAVGSFM  224 (325)
T ss_pred             HH----hcCCEEEEccCCCCc-chH-HhcCCCcEEEecCCCC
Confidence            11    368999999987633 334 8899999999998654

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.065  Score=46.69  Aligned_cols=81  Identities=27%  Similarity=0.416  Sum_probs=52.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HHHcCCC-Ee----eccCCCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGAD-ET----AKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~~~g~~-~v----~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      +++++||+| +|++|..+++.+...|+ +|+.+++++++.+. .++++.. .+    .|+ .+.++....+.++.+.. +
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv-~d~~~v~~~~~~~~~~~-g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADV-TDLAAMQAAAEEAVERF-G   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecC-CCHHHHHHHHHHHHHHc-C
Confidence            468999998 59999999999888998 67878887776554 3445421 11    122 12223333334443322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|++|++.|.
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            69999999985

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.07  E-value=0.13  Score=43.88  Aligned_cols=104  Identities=17%  Similarity=0.277  Sum_probs=59.9

Q ss_pred             CCCeEEEECC---CHHHHHHHHHHHHcCCCeEEEecCCh---hHHH-HHHHcCCCEe--eccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVDV---QRLS-IARNLGADET--AKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G~---g~vG~~ai~la~~~g~~~vv~v~~~~---~~~~-~~~~~g~~~v--~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      .+++++|.|+   +++|.++++.+...|+ +|+.+.++.   ++.+ ..+++....+  +..+ .+.++....+.++.+.
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            4678999985   5999999888878898 566665432   2333 3333321111  1112 2223333444444433


Q ss_pred             cCCCccEEEEccCCh--------------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          206 MGSGIDVSFDCVGFD--------------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      . +++|+++++.|..              +               ..+.+++.+.++|+++.++.
T Consensus        85 ~-g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS  148 (257)
T PRK08594         85 V-GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTY  148 (257)
T ss_pred             C-CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcc
Confidence            2 4799999987631              0               12344556677899998874

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.06  E-value=0.061  Score=45.60  Aligned_cols=81  Identities=19%  Similarity=0.197  Sum_probs=47.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .+.+++|+| +|.+|..+++.+...|+ .|+.+ .++++..+.+++.+.. .+..+ .+.++....+.++.+. -+++|+
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~-~~~~Dl~~~~~~~~~~~~~~~~-~~~id~   82 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVF-TIKCDVGNRDQVKKSKEVVEKE-FGRVDV   82 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCe-EEEecCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            357899998 59999999998888898 45554 3344444444433322 22111 2222333334443332 246999


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      +|.+.|.
T Consensus        83 li~~ag~   89 (255)
T PRK06463         83 LVNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9999875

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.06  E-value=0.061  Score=45.85  Aligned_cols=81  Identities=20%  Similarity=0.240  Sum_probs=50.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc-CCCE-eeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL-GADE-TAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~-g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++++++|.| +|.+|..+++.+...|. +|+.+++++++.+.+++. +... .+..+ ...++....+.++.+.. +.+|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~id   81 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAF-GKID   81 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHh-CCCC
Confidence            467899998 59999999998888898 678888877665555442 3211 11111 11122333344433322 4689


Q ss_pred             EEEEccC
Q 020928          212 VSFDCVG  218 (319)
Q Consensus       212 ~v~d~~g  218 (319)
                      ++|++.|
T Consensus        82 ~li~~Ag   88 (262)
T TIGR03325        82 CLIPNAG   88 (262)
T ss_pred             EEEECCC
Confidence            9999886

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08317 hypothetical protein; Provisional

Probab=96.05  E-value=0.099  Score=43.68  Aligned_cols=104  Identities=21%  Similarity=0.303  Sum_probs=67.8

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHc--CCCEeeccCCCCcchhHHHHHhhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL--GADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~--g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ++..+++++++||.+|+|. |..+..+++..+ ...+++++.+++..+.+++.  .....+.+...  +.    ..+. .
T Consensus        12 ~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~--d~----~~~~-~   83 (241)
T PRK08317         12 FELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG--DA----DGLP-F   83 (241)
T ss_pred             HHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec--cc----ccCC-C
Confidence            4557889999999999877 888889998873 33799999999888877764  11111111110  11    0000 0


Q ss_pred             cCCCccEEEEcc-----CC-hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCV-----GF-DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~-----g~-~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+|+-..     .. ...+..+.+.|+++|+++...
T Consensus        84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            134688887532     22 246788899999999998664

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.062  Score=45.48  Aligned_cols=81  Identities=25%  Similarity=0.286  Sum_probs=49.7

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCC-CCcchhHHHHHhhhhcCCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVST-DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~  209 (319)
                      +++++|.| +|.+|..+++.+...|. .|+++++++++.+.+.+    .+.. ..+..+- +.++....+.++.+.. +.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~   78 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKF-GR   78 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh-CC
Confidence            46889998 59999999998888998 78888877765543322    2211 1222222 2223333333333322 46


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|+++++.|.
T Consensus        79 id~lI~~ag~   88 (252)
T PRK07677         79 IDALINNAAG   88 (252)
T ss_pred             ccEEEECCCC
Confidence            8999999874

>PLN02244 tocopherol O-methyltransferase

Probab=96.03  E-value=0.15  Score=45.50  Aligned_cols=97  Identities=16%  Similarity=0.239  Sum_probs=62.9

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      +++++||=+|+|. |..+..+++..|+ .|++++.++...+.+++.    +...-+.+..  .|.    ..+. ...+.|
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~--~D~----~~~~-~~~~~F  187 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQV--ADA----LNQP-FEDGQF  187 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE--cCc----ccCC-CCCCCc
Confidence            7888999899876 7778888888887 799999998876665542    3211111100  011    0010 013569


Q ss_pred             cEEEEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          211 DVSFDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       211 d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |+|+.....      ...++.+.+.|+++|+++...
T Consensus       188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            999864332      236778899999999998765

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.03  E-value=0.16  Score=39.79  Aligned_cols=88  Identities=11%  Similarity=0.052  Sum_probs=50.9

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|+|+|+|.+|.--++.+...|+ .|.+++  ++..+.+++++.-....     ..       +.+..-.++|+||-
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~~~~-----~~-------~~~~dl~~a~lVia   76 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYITWKQ-----KT-------FSNDDIKDAHLIYA   76 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcEEEe-----cc-------cChhcCCCceEEEE
Confidence            46889999999999998888888898 555553  33333334443211110     01       11112246899999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEe
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +.+.++.-..+....+..+ ++..
T Consensus        77 aT~d~e~N~~i~~~a~~~~-~vn~   99 (157)
T PRK06719         77 ATNQHAVNMMVKQAAHDFQ-WVNV   99 (157)
T ss_pred             CCCCHHHHHHHHHHHHHCC-cEEE
Confidence            9998744333333333433 4443

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.02  E-value=0.092  Score=44.22  Aligned_cols=82  Identities=17%  Similarity=0.187  Sum_probs=49.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh--HHHHHHHcCCC-EeeccCC-CCcchhHHHHHhhhhcCCCc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ--RLSIARNLGAD-ETAKVST-DIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~--~~~~~~~~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .++++||.| +|.+|..++..+...|+ .|+.+++++.  ..+.+++.+.. ..+..+- +.++....+.++.+. .+++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~~   81 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE-FGHI   81 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH-cCCC
Confidence            468999998 59999999998888898 6777776542  22333444422 2222222 222333333333332 2469


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |+++++.|.
T Consensus        82 d~li~~ag~   90 (248)
T TIGR01832        82 DILVNNAGI   90 (248)
T ss_pred             CEEEECCCC
Confidence            999999875

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=96.02  E-value=0.16  Score=40.92  Aligned_cols=99  Identities=16%  Similarity=0.296  Sum_probs=63.8

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ....+.++.+||=+|+|. |..++.+++.....++++++.+++..+.+++    ++...+.....   +...   .    
T Consensus        25 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~---d~~~---~----   93 (187)
T PRK08287         25 SKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG---EAPI---E----   93 (187)
T ss_pred             HhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec---Cchh---h----
Confidence            445677889999898776 7777777877543479999999987776654    33322211111   1110   1    


Q ss_pred             cCCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ....+|+|+.....   ...+..+.+.|+++|+++..
T Consensus        94 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~  130 (187)
T PRK08287         94 LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLT  130 (187)
T ss_pred             cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEE
Confidence            12468999854321   23567788999999998764

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.21  Score=42.80  Aligned_cols=78  Identities=28%  Similarity=0.440  Sum_probs=46.6

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEe----eccCCCCcchhHHHHHhhhhcCCC
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADET----AKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v----~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      +++|+| +|++|..+++.+...|+ .|+.+++++++.+.+    +..+...+    .|+ .+.++....+.++.+. .++
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~-~~~   78 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDI-SDYDAVAAFAADIHAA-HGS   78 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeC-CCHHHHHHHHHHHHHh-cCC
Confidence            688998 59999999998888898 577777766554322    22333221    222 1122222223333322 346


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|++.|.
T Consensus        79 id~lv~~ag~   88 (272)
T PRK07832         79 MDVVMNIAGI   88 (272)
T ss_pred             CCEEEECCCC
Confidence            9999999984

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.075  Score=45.24  Aligned_cols=84  Identities=24%  Similarity=0.324  Sum_probs=51.3

Q ss_pred             CCCCCeEEEECC-C-HHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-----cCCCEee--ccCC-CCcchhHHHHHhh
Q 020928          134 VGPETNVMIMGS-G-PIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-----LGADETA--KVST-DIEDVDTDVGKIQ  203 (319)
Q Consensus       134 ~~~~~~vlI~G~-g-~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-----~g~~~v~--~~~~-~~~~~~~~i~~~~  203 (319)
                      +.++++++|+|+ | ++|.++++.+...|+ .|+++++++++.+...+     ++...+.  ..+- +.++....+.++.
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   92 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV   92 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            445789999984 5 799999999989998 57777777665443322     3432222  1111 1122333333333


Q ss_pred             hhcCCCccEEEEccCC
Q 020928          204 NAMGSGIDVSFDCVGF  219 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~  219 (319)
                      +. .+.+|++|++.|.
T Consensus        93 ~~-~g~id~li~~ag~  107 (262)
T PRK07831         93 ER-LGRLDVLVNNAGL  107 (262)
T ss_pred             HH-cCCCCEEEECCCC
Confidence            32 2479999999984

>PRK09186 flagellin modification protein A; Provisional

Probab=96.01  E-value=0.23  Score=42.01  Aligned_cols=81  Identities=23%  Similarity=0.357  Sum_probs=49.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc----CCCE--eeccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL----GADE--TAKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~----g~~~--v~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      ++.++||.| +|.+|..++..+...|+ .|+.+.+++++.+.+ +++    +...  .+..+ .+.+++...+.++.+..
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   81 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY   81 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            467899998 59999999998888898 677777776654432 222    2211  11111 12223333344433322


Q ss_pred             CCCccEEEEccC
Q 020928          207 GSGIDVSFDCVG  218 (319)
Q Consensus       207 ~~~~d~v~d~~g  218 (319)
                       +++|+++.+.+
T Consensus        82 -~~id~vi~~A~   92 (256)
T PRK09186         82 -GKIDGAVNCAY   92 (256)
T ss_pred             -CCccEEEECCc
Confidence             46899999885

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.00  E-value=0.078  Score=38.23  Aligned_cols=89  Identities=13%  Similarity=0.231  Sum_probs=57.9

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+.+|||+|+|.+|..-++.+...|+ .|.+++...   +..+  +.-....     ..+.+        .-.++++||-
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~--~~i~~~~-----~~~~~--------~l~~~~lV~~   66 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSE--GLIQLIR-----REFEE--------DLDGADLVFA   66 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHH--TSCEEEE-----SS-GG--------GCTTESEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhh--hHHHHHh-----hhHHH--------HHhhheEEEe
Confidence            47899999999999999999999998 677776654   2222  2111111     12211        1246999999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +.+.++.-+.+.+..+..|.++.+...+
T Consensus        67 at~d~~~n~~i~~~a~~~~i~vn~~D~p   94 (103)
T PF13241_consen   67 ATDDPELNEAIYADARARGILVNVVDDP   94 (103)
T ss_dssp             -SS-HHHHHHHHHHHHHTTSEEEETT-C
T ss_pred             cCCCHHHHHHHHHHHhhCCEEEEECCCc
Confidence            9998877777777778788888776533

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.99  E-value=0.19  Score=41.98  Aligned_cols=99  Identities=18%  Similarity=0.209  Sum_probs=61.8

Q ss_pred             HHHhcC-CCCCCeEEEECCCHHHHHHHHHHHHcCCC--eEEEecCC----hhH--------HHHHHHcCCCEeeccCCCC
Q 020928          128 ACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAP--RIIITDVD----VQR--------LSIARNLGADETAKVSTDI  192 (319)
Q Consensus       128 ~l~~~~-~~~~~~vlI~G~g~vG~~ai~la~~~g~~--~vv~v~~~----~~~--------~~~~~~~g~~~v~~~~~~~  192 (319)
                      +++... --.+.+++|+|+|+.|..++..+...|++  ++..++++    +++        .+++++++... .     .
T Consensus        15 al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~-----~   88 (226)
T cd05311          15 ALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-T-----G   88 (226)
T ss_pred             HHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-c-----c
Confidence            344433 24567999999999999999988889998  89999887    333        33444443211 0     0


Q ss_pred             cchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          193 EDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       193 ~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .++.+.   +     .++|++|++++..-.....++.|.+...++.+.
T Consensus        89 ~~l~~~---l-----~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls  128 (226)
T cd05311          89 GTLKEA---L-----KGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA  128 (226)
T ss_pred             CCHHHH---H-----hcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC
Confidence            111111   2     248999999973312246667777776655544

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK06128 oxidoreductase; Provisional

Probab=95.98  E-value=0.19  Score=43.87  Aligned_cols=104  Identities=18%  Similarity=0.204  Sum_probs=59.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh--H----HHHHHHcCCCEe-eccCC-CCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ--R----LSIARNLGADET-AKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~--~----~~~~~~~g~~~v-~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      .++++||.| +|.+|..++..+...|+ .|+.+.++.+  .    .+.+++.+.... +..+- +.++....+.++.+. 
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-  131 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE-  131 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH-
Confidence            467899998 69999999998888898 5555544321  1    222333343221 11111 122223333333332 


Q ss_pred             CCCccEEEEccCCh--------------------------HHHHHHHHhhcCCCEEEEecc
Q 020928          207 GSGIDVSFDCVGFD--------------------------KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      -+++|++|.+.|..                          ...+.+.+.+..+|+++.++.
T Consensus       132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence            24799999998841                          023344555667889988764

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.98  E-value=0.079  Score=44.24  Aligned_cols=82  Identities=16%  Similarity=0.185  Sum_probs=50.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      ++.+++|.| ++++|.+....+...|+ .|+.+.+++++.+.+    ++.+... .+..+ .+.++....+.++.+..+.
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            467899998 58999998888888899 677777777665433    2334321 11111 2223333344444443343


Q ss_pred             CccEEEEccC
Q 020928          209 GIDVSFDCVG  218 (319)
Q Consensus       209 ~~d~v~d~~g  218 (319)
                      .+|++|++.|
T Consensus        83 ~iD~li~nag   92 (227)
T PRK08862         83 APDVLVNNWT   92 (227)
T ss_pred             CCCEEEECCc
Confidence            7999999986

>PRK06180 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.081  Score=45.54  Aligned_cols=82  Identities=22%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC--EeeccCCC-CcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD--ETAKVSTD-IEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~--~v~~~~~~-~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .+.++||+| +|.+|..+++.+...|. +|+++++++++.+.+.+....  ..+..+-. .+.....+..+.+. -+.+|
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~-~~~~d   80 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEAT-FGPID   80 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHH-hCCCC
Confidence            356899998 59999999998888898 688888888776655543221  11211211 12222233333222 24689


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus        81 ~vv~~ag~   88 (277)
T PRK06180         81 VLVNNAGY   88 (277)
T ss_pred             EEEECCCc
Confidence            99999886

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.96  E-value=0.039  Score=47.73  Aligned_cols=76  Identities=14%  Similarity=0.139  Sum_probs=50.7

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCE-eeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADE-TAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~-v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .+.+++|+|+|+.+.+++..+..+|++.+.++.++.++.+.+. .++... +..+.     ..+.+..    .-..+|+|
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~-----~~~~~~~----~~~~~DiV  194 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE-----GDSGGLA----IEKAAEVL  194 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc-----chhhhhh----cccCCCEE
Confidence            5789999999999999999999999988999999887766543 343211 11110     0011111    11468999


Q ss_pred             EEccCCh
Q 020928          214 FDCVGFD  220 (319)
Q Consensus       214 ~d~~g~~  220 (319)
                      |+|++..
T Consensus       195 InaTp~g  201 (282)
T TIGR01809       195 VSTVPAD  201 (282)
T ss_pred             EECCCCC
Confidence            9998753

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.96  E-value=0.23  Score=40.66  Aligned_cols=91  Identities=10%  Similarity=0.182  Sum_probs=52.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChh-H-HHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ-R-LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~-~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .+.+|||+|+|.+|...+..+...|+ .|.+++.... . .+++.+ +.  + .+...  .+       ....-.++|+|
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~-~~--i-~~~~~--~~-------~~~~l~~adlV   74 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEE-GK--I-RWKQK--EF-------EPSDIVDAFLV   74 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhC-CC--E-EEEec--CC-------ChhhcCCceEE
Confidence            46799999999999999888888897 5666654321 1 222222 21  1 11111  11       01112468999


Q ss_pred             EEccCChHHHHHHHHhhcCCCEEEEecc
Q 020928          214 FDCVGFDKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      |-+.+.++.-..+.... ..+.++.+..
T Consensus        75 iaaT~d~elN~~i~~~a-~~~~lvn~~d  101 (202)
T PRK06718         75 IAATNDPRVNEQVKEDL-PENALFNVIT  101 (202)
T ss_pred             EEcCCCHHHHHHHHHHH-HhCCcEEECC
Confidence            99999885444444443 4455655543

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.95  E-value=0.053  Score=46.32  Aligned_cols=81  Identities=22%  Similarity=0.411  Sum_probs=51.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh-HHHHH---HHcCCC--EeeccCCCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ-RLSIA---RNLGAD--ETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~-~~~~~---~~~g~~--~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      .|+.|||+| ++++|.+.++-...+|+ +++..|.+++ ..+.+   ++.|-.  ..-|. ++.++......++.++.| 
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdi-s~~eei~~~a~~Vk~e~G-  113 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDI-SDREEIYRLAKKVKKEVG-  113 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecC-CCHHHHHHHHHHHHHhcC-
Confidence            688999998 58999877776666787 5666665443 33333   434411  12222 344555555566665554 


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|++++++|-
T Consensus       114 ~V~ILVNNAGI  124 (300)
T KOG1201|consen  114 DVDILVNNAGI  124 (300)
T ss_pred             CceEEEecccc
Confidence            89999999986

>PLN03139 formate dehydrogenase; Provisional

Probab=95.95  E-value=0.13  Score=46.46  Aligned_cols=92  Identities=16%  Similarity=0.200  Sum_probs=62.5

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++....+..++.|+...       .+    +.++.    ...|+|+-
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~~~~-------~~----l~ell----~~sDvV~l  261 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGAKFE-------ED----LDAML----PKCDVVVI  261 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCceec-------CC----HHHHH----hhCCEEEE
Confidence            56799999999999999999999999 68888876544444444553221       01    22232    24788877


Q ss_pred             ccCChHHH-----HHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFDKTM-----STALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~~~~-----~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +.......     ...+..|+++..++.++...
T Consensus       262 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~  294 (386)
T PLN03139        262 NTPLTEKTRGMFNKERIAKMKKGVLIVNNARGA  294 (386)
T ss_pred             eCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCc
Confidence            77643222     34677889999888887543

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.076  Score=44.95  Aligned_cols=82  Identities=21%  Similarity=0.323  Sum_probs=50.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c---CCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L---GADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~---g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|..+++.+...|+ +|+.+++++++.+.+.+ +   +... .+..+ .+.++....+.++.+.. +
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   85 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL-G   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            468899998 59999999998888898 67777777765543322 2   2211 11111 12223333334433322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|+++.+.|.
T Consensus        86 ~id~lv~~ag~   96 (253)
T PRK05867         86 GIDIAVCNAGI   96 (253)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.91  E-value=0.086  Score=44.61  Aligned_cols=82  Identities=21%  Similarity=0.245  Sum_probs=51.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCE--eeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE--TAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~--v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++.++||+| +|.+|..+++.+...|+ .|+.++++++..+...++....  .+..+- +.++....+.++.+. ..++|
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~~d   91 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISA-FGRID   91 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHH-hCCCC
Confidence            467899998 59999999988888898 6888888776655555543222  222222 122223333333332 24689


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      .++.+.|.
T Consensus        92 ~vi~~ag~   99 (255)
T PRK06841         92 ILVNSAGV   99 (255)
T ss_pred             EEEECCCC
Confidence            99999985

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=95.91  E-value=0.14  Score=43.73  Aligned_cols=104  Identities=16%  Similarity=0.249  Sum_probs=66.5

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHHcC-------CCEeeccCCCCcchhHHHHHh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNLG-------ADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~~g-------~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      ...++++++||-.|+|. |..+..+++..+. ..|+++|.+++-.+.+++..       ...+.....   +    ...+
T Consensus        68 ~~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~---d----~~~l  139 (261)
T PLN02233         68 WSGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEG---D----ATDL  139 (261)
T ss_pred             HhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEc---c----cccC
Confidence            35778899999998776 6677788887653 27999999999888776421       111100001   1    1111


Q ss_pred             hhhcCCCccEEEEccCC------hHHHHHHHHhhcCCCEEEEecccC
Q 020928          203 QNAMGSGIDVSFDCVGF------DKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      . ..++.+|.|+-..+-      ...++++.+.|+|+|+++.+....
T Consensus       140 p-~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        140 P-FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             C-CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            1 013468988754321      246788999999999998876543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.89  E-value=0.081  Score=43.83  Aligned_cols=95  Identities=21%  Similarity=0.284  Sum_probs=64.5

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEe--eccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET--AKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      -+|.+||=+|+|+ |+++.-+|+. |+ .|.++|-+++..+.++......-  ++|..      ..+.++.. .+..||+
T Consensus        58 l~g~~vLDvGCGg-G~Lse~mAr~-Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~------~~~edl~~-~~~~FDv  127 (243)
T COG2227          58 LPGLRVLDVGCGG-GILSEPLARL-GA-SVTGIDASEKPIEVAKLHALESGVNIDYRQ------ATVEDLAS-AGGQFDV  127 (243)
T ss_pred             CCCCeEEEecCCc-cHhhHHHHHC-CC-eeEEecCChHHHHHHHHhhhhccccccchh------hhHHHHHh-cCCCccE
Confidence            4788899899877 7888888874 77 89999999999888875322111  33432      12333433 2368999


Q ss_pred             EEE-----ccCCh-HHHHHHHHhhcCCCEEEEe
Q 020928          213 SFD-----CVGFD-KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       213 v~d-----~~g~~-~~~~~~~~~l~~~G~~v~~  239 (319)
                      |+.     -+..+ ..+..+.+.++|+|.++.-
T Consensus       128 V~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         128 VTCMEVLEHVPDPESFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             EEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence            963     33333 3567799999999987754

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.067  Score=45.49  Aligned_cols=85  Identities=20%  Similarity=0.245  Sum_probs=52.1

Q ss_pred             CCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCC--EeeccCCC-CcchhHHHHHhhhhcCC
Q 020928          134 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD--ETAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       134 ~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~--~v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      .-++.++||+| +|.+|..++..+...|. .|+.++++++..+.+.+ ....  ..+..+-. .++....+.++.+.. .
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   85 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERF-G   85 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            35678999998 59999999998888898 58888777665554433 2211  12221211 122222333333222 4


Q ss_pred             CccEEEEccCCh
Q 020928          209 GIDVSFDCVGFD  220 (319)
Q Consensus       209 ~~d~v~d~~g~~  220 (319)
                      ++|.||.+.|..
T Consensus        86 ~~d~vi~~ag~~   97 (264)
T PRK12829         86 GLDVLVNNAGIA   97 (264)
T ss_pred             CCCEEEECCCCC
Confidence            799999988753

>PRK06398 aldose dehydrogenase; Validated

Probab=95.86  E-value=0.15  Score=43.43  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=47.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .++++||+| ++.+|..++..+...|+ .|+.+++++.+..     .. ..+..+ .+.++....+.++.+. .+.+|++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~-----~~-~~~~~D~~~~~~i~~~~~~~~~~-~~~id~l   76 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN-----DV-DYFKVDVSNKEQVIKGIDYVISK-YGRIDIL   76 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC-----ce-EEEEccCCCHHHHHHHHHHHHHH-cCCCCEE
Confidence            367899998 59999999998888998 6777776654321     11 111111 2222333344444332 2469999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        77 i~~Ag~   82 (258)
T PRK06398         77 VNNAGI   82 (258)
T ss_pred             EECCCC
Confidence            998874

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.86  E-value=0.38  Score=35.20  Aligned_cols=92  Identities=16%  Similarity=0.160  Sum_probs=60.3

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      ++|+|.|.+|..+++.++..+. .|++++.++++.+.+++.|.. ++.-+..+.+   .+++.   .-..++.++-+.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~-~i~gd~~~~~---~l~~a---~i~~a~~vv~~~~~   72 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE-VIYGDATDPE---VLERA---GIEKADAVVILTDD   72 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE-EEES-TTSHH---HHHHT---TGGCESEEEEESSS
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc-cccccchhhh---HHhhc---CccccCEEEEccCC
Confidence            5788999999999999998664 799999999999999988844 3332332222   22222   23568888888876


Q ss_pred             hHH---HHHHHHhhcCCCEEEEe
Q 020928          220 DKT---MSTALNATRPGGKVCLI  239 (319)
Q Consensus       220 ~~~---~~~~~~~l~~~G~~v~~  239 (319)
                      +..   .....+.+.+..+++..
T Consensus        73 d~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   73 DEENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             HHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCeEEEE
Confidence            532   22334445566666643

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=95.84  E-value=0.069  Score=44.29  Aligned_cols=105  Identities=12%  Similarity=0.112  Sum_probs=62.8

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEee-------ccCCCCcc-hhHHHHHh
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETA-------KVSTDIED-VDTDVGKI  202 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~-------~~~~~~~~-~~~~i~~~  202 (319)
                      ....++.+||+.|+|. |.-++.||. .|. .|++++.++...+.+ ++.+.....       .+....-+ +...+-.+
T Consensus        33 ~~~~~~~rvL~~gCG~-G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l  109 (218)
T PRK13255         33 LALPAGSRVLVPLCGK-SLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL  109 (218)
T ss_pred             hCCCCCCeEEEeCCCC-hHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence            3456778999999887 888888886 698 799999999877754 333322100       00000000 00111111


Q ss_pred             hhhcCCCccEEEEccCC--------hHHHHHHHHhhcCCCEEEEe
Q 020928          203 QNAMGSGIDVSFDCVGF--------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      .......+|.|+|...-        ...++.+.++|+++|++..+
T Consensus       110 ~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        110 TAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             CcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            11112468999986531        23578888999999975543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.83  E-value=0.22  Score=42.12  Aligned_cols=82  Identities=22%  Similarity=0.381  Sum_probs=49.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---CCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---GADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.++||+| +|.+|..+++.+...|. .|+.+++++++.+.+ .++   +... .+..+- +.++....+..+.+. ..
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~   80 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVET-FG   80 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence            357899998 69999999998888898 677777777654433 222   3221 122121 222333333333332 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|.+.+.
T Consensus        81 ~~d~vi~~a~~   91 (258)
T PRK12429         81 GVDILVNNAGI   91 (258)
T ss_pred             CCCEEEECCCC
Confidence            69999998874

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=95.83  E-value=0.09  Score=42.24  Aligned_cols=94  Identities=19%  Similarity=0.238  Sum_probs=58.9

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++++||-+|+|. |..++.+++.....+|++++.+++..+.++    +.+...+.....   +.    .++.  ....+|
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~---d~----~~~~--~~~~fD  111 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG---RA----EDFQ--HEEQFD  111 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec---ch----hhcc--ccCCcc
Confidence            378888888766 667777776654447999999987665554    344432211111   21    1111  135799


Q ss_pred             EEEEccC-C-hHHHHHHHHhhcCCCEEEEe
Q 020928          212 VSFDCVG-F-DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       212 ~v~d~~g-~-~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +|+-..- . +..++.+.+.|+++|+++..
T Consensus       112 ~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       112 VITSRALASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             EEEehhhhCHHHHHHHHHHhcCCCCEEEEE
Confidence            9876431 1 24566778899999998865

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.81  E-value=0.2  Score=42.55  Aligned_cols=97  Identities=24%  Similarity=0.306  Sum_probs=67.3

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      +.....+++++||=+|+|. |..+..+++.. +. .|++++.++...+.+++.+.+...      .+.    ..+.  ..
T Consensus        22 l~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~~------~d~----~~~~--~~   87 (255)
T PRK14103         22 LARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDART------GDV----RDWK--PK   87 (255)
T ss_pred             HHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEEE------cCh----hhCC--CC
Confidence            4556678889999999877 77888888875 44 799999999988888775533211      121    1121  13


Q ss_pred             CCccEEEEccC-----C-hHHHHHHHHhhcCCCEEEEe
Q 020928          208 SGIDVSFDCVG-----F-DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       208 ~~~d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ..+|+|+....     . ...+..+.+.|+|+|+++..
T Consensus        88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            47999986443     1 23567888899999998764

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.81  E-value=0.088  Score=44.87  Aligned_cols=82  Identities=26%  Similarity=0.333  Sum_probs=50.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c----CCCEe--eccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L----GADET--AKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~----g~~~v--~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      .+++++|.| ++.+|..+++.+...|+ +|+.+++++++.+.+.+ +    +...+  +..+ .+.++....+.++.+..
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            467899998 59999999998888899 67778787765443321 1    11122  1111 12223333333333322


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                       +.+|+++++.|.
T Consensus        86 -g~id~li~~Ag~   97 (265)
T PRK07062         86 -GGVDMLVNNAGQ   97 (265)
T ss_pred             -CCCCEEEECCCC
Confidence             469999999984

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.80  E-value=0.093  Score=44.73  Aligned_cols=82  Identities=15%  Similarity=0.212  Sum_probs=47.6

Q ss_pred             CCCeEEEECC-C--HHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~-g--~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .+++++|.|+ +  ++|.++.+.+...|+ +|+...+++...+.++    +.+....+..+ .+.++....+.++.+.. 
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~-   84 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW-   84 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc-
Confidence            4678899985 4  799998887777898 5666666543222232    23432222222 22233334444444333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +.+|+++++.|.
T Consensus        85 g~iDilVnnag~   96 (260)
T PRK06603         85 GSFDFLLHGMAF   96 (260)
T ss_pred             CCccEEEEcccc
Confidence            469999998873

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=95.79  E-value=0.14  Score=44.07  Aligned_cols=88  Identities=26%  Similarity=0.312  Sum_probs=55.0

Q ss_pred             eEEEECCCHHHHHH-HHHHHHcCCCeEEEecCChhH--HHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          139 NVMIMGSGPIGLVT-LLAARAFGAPRIIITDVDVQR--LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       139 ~vlI~G~g~vG~~a-i~la~~~g~~~vv~v~~~~~~--~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      ++.|+|+|.+|... ..+.+..++..+.+++.++++  .++.+++|......      +    +..+..  ..++|+||+
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~------~----~e~ll~--~~dIDaV~i   70 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAE------G----VDGLLA--NPDIDIVFD   70 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEEC------C----HHHHhc--CCCCCEEEE
Confidence            68899999999754 566665667444445555543  45677777543221      1    112221  247999999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEE
Q 020928          216 CVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      +.+...+.+....++..+-.++.
T Consensus        71 aTp~~~H~e~a~~al~aGk~VId   93 (285)
T TIGR03215        71 ATSAKAHARHARLLAELGKIVID   93 (285)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEE
Confidence            99988666666666666555543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.79  E-value=0.074  Score=45.11  Aligned_cols=82  Identities=21%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc---CCC-EeeccCC-CCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL---GAD-ETAKVST-DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~---g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~  209 (319)
                      ++.++||+| +|.+|..+++.+...|+ .++.+++++++.+..+++   +.. ..+..+- +.++....+.++.+. .++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~   83 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAK-FGR   83 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh-cCC
Confidence            357899998 59999999888778898 566676766665444432   322 1122221 122233333333332 247


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|.+.|.
T Consensus        84 id~vi~~ag~   93 (258)
T PRK08628         84 IDGLVNNAGV   93 (258)
T ss_pred             CCEEEECCcc
Confidence            9999999984

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.78  E-value=0.1  Score=44.58  Aligned_cols=82  Identities=18%  Similarity=0.255  Sum_probs=47.8

Q ss_pred             CCCeEEEECC---CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~---g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +++++||.|+   +++|.+..+.+...|+ .|+.+.+.+...+.+++    .+....+..+ .+.++....+.++.+. .
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~   82 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKH-W   82 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHH-h
Confidence            4678999983   5899999988888999 56655444433333333    2322222222 2223333344444432 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus        83 g~iD~lVnnAG~   94 (261)
T PRK08690         83 DGLDGLVHSIGF   94 (261)
T ss_pred             CCCcEEEECCcc
Confidence            479999999874

>PRK06500 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.11  Score=43.66  Aligned_cols=82  Identities=26%  Similarity=0.303  Sum_probs=50.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HHHcCCCEe-eccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGADET-AKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~~~g~~~v-~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++.+++|.| +|.+|..+++.+...|+ .|+.+++++++.+. .++++.... +..+- +..+....+..+.+. .+++|
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id   82 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEA-FGRLD   82 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHH-hCCCC
Confidence            467899998 59999999998888998 67778777665443 344553321 11111 112222222333322 34699


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|.+.|.
T Consensus        83 ~vi~~ag~   90 (249)
T PRK06500         83 AVFINAGV   90 (249)
T ss_pred             EEEECCCC
Confidence            99999874

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=95.77  E-value=0.19  Score=41.39  Aligned_cols=104  Identities=23%  Similarity=0.342  Sum_probs=69.8

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      ++....+++|-+|++. |..++.+|..+. -.++++++.++++.+.+++    .|.+..+..--. .+..+.+.+   ..
T Consensus        55 ~~~~~~k~iLEiGT~~-GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~---~~  129 (219)
T COG4122          55 ARLSGPKRILEIGTAI-GYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSR---LL  129 (219)
T ss_pred             HHhcCCceEEEeeccc-CHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHh---cc
Confidence            5567889999998654 788888888776 3379999999998777765    565553221111 243333333   23


Q ss_pred             CCCccEEE-EccCC--hHHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSF-DCVGF--DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~-d~~g~--~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...||.|| |+.=.  +..++.+++.|+++|-++.=.
T Consensus       130 ~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DN  166 (219)
T COG4122         130 DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADN  166 (219)
T ss_pred             CCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence            46799986 43322  357889999999999887543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=95.75  E-value=0.21  Score=42.78  Aligned_cols=105  Identities=16%  Similarity=0.229  Sum_probs=67.6

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-EeeccCCCCcchhHHHHHhhhhc
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .+...+++++.+||=+|+|. |..+..+++..+. .|++++.+++..+.+++.... ..+....  .+..    ... ..
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~~~~--~D~~----~~~-~~  114 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIEFEA--NDIL----KKD-FP  114 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceEEEE--CCcc----cCC-CC
Confidence            45667889999999998765 6667777777777 799999999888877763221 1111100  1110    000 01


Q ss_pred             CCCccEEEEc--c---C--C-hHHHHHHHHhhcCCCEEEEecc
Q 020928          207 GSGIDVSFDC--V---G--F-DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~--~---g--~-~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ...+|+|+..  +   +  . ...++.+.+.|+|+|+++....
T Consensus       115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3469998852  1   1  1 2356788899999999987653

>PLN03075 nicotianamine synthase; Provisional

Probab=95.75  E-value=0.14  Score=44.33  Aligned_cols=99  Identities=24%  Similarity=0.271  Sum_probs=65.4

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHcC-C----CEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNLG-A----DETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~g-~----~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++|+-+|+|+.++.++.+++... -.+++.+|.+++..+.+++.- .    ..-+.+..  .+..    +... ...
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~--~Da~----~~~~-~l~  194 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT--ADVM----DVTE-SLK  194 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE--Cchh----hccc-ccC
Confidence            47899999999998998888886543 337999999999888887743 1    11111111  1111    1110 125


Q ss_pred             CccEEEEcc------CC-hHHHHHHHHhhcCCCEEEEec
Q 020928          209 GIDVSFDCV------GF-DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       209 ~~d~v~d~~------g~-~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +||+||-.+      .. ...+..+.+.|+++|.++.=.
T Consensus       195 ~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        195 EYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             CcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            799998764      12 246788999999999887643

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=95.75  E-value=0.059  Score=42.29  Aligned_cols=81  Identities=20%  Similarity=0.257  Sum_probs=49.2

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC--hhHHH-HH---HHcCCCEeecc--C-CCCcchhHHHHHhhhhcC
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD--VQRLS-IA---RNLGADETAKV--S-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~--~~~~~-~~---~~~g~~~v~~~--~-~~~~~~~~~i~~~~~~~~  207 (319)
                      ++++|+| ++++|..+++.+-..|..+|+.+.++  .++.+ +.   +..+ ..+..+  + ...++....+..+.+ ..
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~-~~   78 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIK-RF   78 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHH-HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccc-cc
Confidence            3688998 69999988887777777678888887  33333 32   3334 322222  2 222333334444432 24


Q ss_pred             CCccEEEEccCCh
Q 020928          208 SGIDVSFDCVGFD  220 (319)
Q Consensus       208 ~~~d~v~d~~g~~  220 (319)
                      ..+|++|.+.|..
T Consensus        79 ~~ld~li~~ag~~   91 (167)
T PF00106_consen   79 GPLDILINNAGIF   91 (167)
T ss_dssp             SSESEEEEECSCT
T ss_pred             ccccccccccccc
Confidence            5799999998874

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.73  E-value=0.29  Score=41.66  Aligned_cols=99  Identities=23%  Similarity=0.290  Sum_probs=66.8

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-EeeccCCCCcchhHHHHHhhhhcC
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      +....++++++||=+|+|. |..+..+++..+...|++++.++...+.+++.... ..+.     .+.    ..+.  ..
T Consensus        24 l~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~-----~d~----~~~~--~~   91 (258)
T PRK01683         24 LARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVE-----ADI----ASWQ--PP   91 (258)
T ss_pred             HhhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEE-----Cch----hccC--CC
Confidence            3446678889999999876 77788888876544899999999888887764221 1111     111    1111  13


Q ss_pred             CCccEEEEccCC------hHHHHHHHHhhcCCCEEEEe
Q 020928          208 SGIDVSFDCVGF------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       208 ~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ..+|+|+....-      ...++.+.+.|+++|.++..
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            478998754432      24678888999999998775

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.092  Score=44.00  Aligned_cols=83  Identities=19%  Similarity=0.329  Sum_probs=50.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H---cCCCE--e--eccCC-CCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N---LGADE--T--AKVST-DIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~---~g~~~--v--~~~~~-~~~~~~~~i~~~~~~  205 (319)
                      ++.+++|.| +|.+|..+++.+...|. .|+++++++++.+.+. +   .+...  .  .+... ...++.....++.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            357899998 59999999998888898 6888888776654332 2   12111  1  12211 112333333344433


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      .+..+|.+|.+.|.
T Consensus        84 ~~~~id~vi~~ag~   97 (239)
T PRK08703         84 TQGKLDGIVHCAGY   97 (239)
T ss_pred             hCCCCCEEEEeccc
Confidence            33478999999984

>PRK06196 oxidoreductase; Provisional

Probab=95.71  E-value=0.093  Score=46.16  Aligned_cols=82  Identities=21%  Similarity=0.286  Sum_probs=49.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeeccCC-CCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVST-DIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~~-~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .+.+++|+| +|.+|..++..+...|+ .|+.+++++++.+.+ .++.....+..+- +.++....+.++.+ ..+++|+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~-~~~~iD~  102 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLD-SGRRIDI  102 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHh-cCCCCCE
Confidence            467899998 59999999988888898 677777776654433 3332112222221 12222223333332 2357999


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      +|++.|.
T Consensus       103 li~nAg~  109 (315)
T PRK06196        103 LINNAGV  109 (315)
T ss_pred             EEECCCC
Confidence            9999874

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.70  E-value=0.078  Score=43.15  Aligned_cols=95  Identities=19%  Similarity=0.276  Sum_probs=58.8

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      ....++.+||-+|+|. |..++.+++. |. .|+++|.++...+.+++.    +.. + .  ....+.    ....  ..
T Consensus        26 ~~~~~~~~vLDiGcG~-G~~a~~la~~-g~-~V~~iD~s~~~l~~a~~~~~~~~~~-v-~--~~~~d~----~~~~--~~   92 (195)
T TIGR00477        26 VKTVAPCKTLDLGCGQ-GRNSLYLSLA-GY-DVRAWDHNPASIASVLDMKARENLP-L-R--TDAYDI----NAAA--LN   92 (195)
T ss_pred             hccCCCCcEEEeCCCC-CHHHHHHHHC-CC-eEEEEECCHHHHHHHHHHHHHhCCC-c-e--eEeccc----hhcc--cc
Confidence            4445567899899876 7788788874 76 799999998877765442    222 1 0  000111    0010  12


Q ss_pred             CCccEEEEccC-----C---hHHHHHHHHhhcCCCEEEEe
Q 020928          208 SGIDVSFDCVG-----F---DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       208 ~~~d~v~d~~g-----~---~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ..+|+|+.+..     .   ...+..+.+.|+++|.++.+
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            46999876422     1   24677888899999995544

Part of a tellurite-reducing operon tehA and tehB

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=95.69  E-value=0.082  Score=45.39  Aligned_cols=85  Identities=22%  Similarity=0.223  Sum_probs=53.4

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC--Ee--eccC-CCCcchhHHHHHhhh
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD--ET--AKVS-TDIEDVDTDVGKIQN  204 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~--~v--~~~~-~~~~~~~~~i~~~~~  204 (319)
                      -.+..++|+| +.++|.+++..+...|+ +|+++.+++++.+...+    .+..  .+  +..+ ...++....+....+
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~   84 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE   84 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence            3567888897 69999999999999999 78888888776544332    2221  11  1111 122333333333334


Q ss_pred             hcCCCccEEEEccCCh
Q 020928          205 AMGSGIDVSFDCVGFD  220 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~  220 (319)
                      ...+++|+.+++.|..
T Consensus        85 ~~~GkidiLvnnag~~  100 (270)
T KOG0725|consen   85 KFFGKIDILVNNAGAL  100 (270)
T ss_pred             HhCCCCCEEEEcCCcC
Confidence            3357899999988864

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.13  Score=43.42  Aligned_cols=82  Identities=18%  Similarity=0.329  Sum_probs=48.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---CCC-EeeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---GAD-ETAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.+++|+| +|.+|..+++.+...|. .|+.+++++++.+.+ +++   +.. ..+..+- +.++......++.+.. +
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~   82 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF-G   82 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh-C
Confidence            467899998 59999999998888898 688888876554332 222   211 1122221 1222222233333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|.+.|.
T Consensus        83 ~id~vi~~ag~   93 (250)
T PRK07774         83 GIDYLVNNAAI   93 (250)
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.69  E-value=0.11  Score=43.98  Aligned_cols=104  Identities=16%  Similarity=0.242  Sum_probs=62.4

Q ss_pred             CCCeEEEECC---CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEe--eccC-CCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET--AKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G~---g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v--~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      .+++++|.|+   +++|.++.+.+...|+ +|+.+.++++..+.++++....+  +..+ .+.++....+..+.+.. +.
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-g~   83 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERV-GK   83 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh-CC
Confidence            4678999985   4899999998888898 57777666544444454432221  1111 22223333444443322 46


Q ss_pred             ccEEEEccCCh--------------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          210 IDVSFDCVGFD--------------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       210 ~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +|+++++.|..              +               ..+..++.++.+|+++.++.
T Consensus        84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss  144 (252)
T PRK06079         84 IDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTY  144 (252)
T ss_pred             CCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEec
Confidence            99999988731              0               12344566777788887764

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.67  E-value=0.13  Score=43.71  Aligned_cols=81  Identities=21%  Similarity=0.322  Sum_probs=48.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c--CC-CEeeccCCCC-cchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L--GA-DETAKVSTDI-EDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~--g~-~~v~~~~~~~-~~~~~~i~~~~~~~~~~  209 (319)
                      ++.++||+| +|.+|..++..+...|+ .|+++++++++.+.+.+ +  +. ...+..+-.+ ++.......+.+  .+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARARE--MGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHh--cCC
Confidence            467899998 69999999998888898 68888887766554432 2  11 1111111111 122222222222  357


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|.++.+.|.
T Consensus        81 id~lv~~ag~   90 (263)
T PRK09072         81 INVLINNAGV   90 (263)
T ss_pred             CCEEEECCCC
Confidence            8999999875

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=95.65  E-value=0.1  Score=45.20  Aligned_cols=57  Identities=23%  Similarity=0.296  Sum_probs=46.0

Q ss_pred             HhcCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe--cCChhHHHHHHHcCCCEee
Q 020928          130 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETA  186 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v--~~~~~~~~~~~~~g~~~v~  186 (319)
                      +.+.++||.++||-. +|..|.....++...|++.++++  .-+.+|+..++++|+..+.
T Consensus        96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~  155 (362)
T KOG1252|consen   96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIIL  155 (362)
T ss_pred             HcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEe
Confidence            447899999999987 69999999999999999544444  3366888999999987664

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.64  E-value=0.039  Score=51.18  Aligned_cols=92  Identities=11%  Similarity=0.156  Sum_probs=56.5

Q ss_pred             hcCCCCCCeEE----EEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCE-eeccCCCCcchhHHHHHhhh
Q 020928          131 RANVGPETNVM----IMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE-TAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       131 ~~~~~~~~~vl----I~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ..++++++.+|    |+| +|++|.+++|+++..|+ .|+++...+.+....+..+.+. +++  ....++.+.+..+. 
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~l~~~~-  103 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFD--ATGITDPADLKALY-  103 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEE--CCCCCCHHHHHHHH-
Confidence            36788899888    775 79999999999999999 6776655544332222223332 222  22122222222111 


Q ss_pred             hcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc
Q 020928          205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                                      +..+..++.|.++|+++.++..
T Consensus       104 ----------------~~~~~~l~~l~~~griv~i~s~  125 (450)
T PRK08261        104 ----------------EFFHPVLRSLAPCGRVVVLGRP  125 (450)
T ss_pred             ----------------HHHHHHHHhccCCCEEEEEccc
Confidence                            2456667788888898888753

>PRK08643 acetoin reductase; Validated

Probab=95.64  E-value=0.13  Score=43.63  Aligned_cols=81  Identities=17%  Similarity=0.246  Sum_probs=48.8

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H---cCCCE-eeccCC-CCcchhHHHHHhhhhcCCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N---LGADE-TAKVST-DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~---~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~  209 (319)
                      ++++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+. +   .+... .+..+- +.+.....+.++.+. .++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~   79 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDT-FGD   79 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-cCC
Confidence            56889998 69999999998888898 6888877766544332 2   22211 111111 122222333333332 246


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|.+.|.
T Consensus        80 id~vi~~ag~   89 (256)
T PRK08643         80 LNVVVNNAGV   89 (256)
T ss_pred             CCEEEECCCC
Confidence            9999999875

>PRK08589 short chain dehydrogenase; Validated

Probab=95.63  E-value=0.12  Score=44.25  Aligned_cols=82  Identities=22%  Similarity=0.344  Sum_probs=49.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc---CCC-EeeccC-CCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL---GAD-ETAKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~---g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      +++++||.| ++.+|..+++.+...|+ .|+.++++++..+.++++   +.. ..+..+ .+.++....+.++.+.. +.
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~   82 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF-GR   82 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc-CC
Confidence            467899998 59999999988778898 677777774433334333   221 112111 22223333444444333 46


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|++.|.
T Consensus        83 id~li~~Ag~   92 (272)
T PRK08589         83 VDVLFNNAGV   92 (272)
T ss_pred             cCEEEECCCC
Confidence            8999998874

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.63  E-value=0.16  Score=44.00  Aligned_cols=92  Identities=24%  Similarity=0.287  Sum_probs=54.7

Q ss_pred             CeEEEECCCHHHHH-HHHHHHHcCCCeEEEecCChh--HHHHHHHcCCCEeeccCCCCcchhHHHHHhhhh-cCCCccEE
Q 020928          138 TNVMIMGSGPIGLV-TLLAARAFGAPRIIITDVDVQ--RLSIARNLGADETAKVSTDIEDVDTDVGKIQNA-MGSGIDVS  213 (319)
Q Consensus       138 ~~vlI~G~g~vG~~-ai~la~~~g~~~vv~v~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~-~~~~~d~v  213 (319)
                      -++.|+|+|.+|.. +..+.+.-++..+.+++.+++  ..++++++|.....      .+    +..+.+. ...++|+|
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~------~~----ie~LL~~~~~~dIDiV   74 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSA------EG----IDGLLAMPEFDDIDIV   74 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCccc------CC----HHHHHhCcCCCCCCEE
Confidence            47899999999986 445555556644445555554  34567777743211      12    2222221 11469999


Q ss_pred             EEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          214 FDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      |++.+...+.+....++..+-.++..
T Consensus        75 f~AT~a~~H~e~a~~a~eaGk~VID~  100 (302)
T PRK08300         75 FDATSAGAHVRHAAKLREAGIRAIDL  100 (302)
T ss_pred             EECCCHHHHHHHHHHHHHcCCeEEEC
Confidence            99999875555555565555555543

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.62  E-value=0.13  Score=44.20  Aligned_cols=105  Identities=21%  Similarity=0.274  Sum_probs=61.3

Q ss_pred             CCCCeEEEECC---CHHHHHHHHHHHHcCCCeEEEecCChh---HHH-HHHHcCCCEeeccCC-CCcchhHHHHHhhhhc
Q 020928          135 GPETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVDVQ---RLS-IARNLGADETAKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       135 ~~~~~vlI~G~---g~vG~~ai~la~~~g~~~vv~v~~~~~---~~~-~~~~~g~~~v~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      -.++++||+|+   +++|.+++..+...|+ +|+.+.+++.   +.+ +.++++....+..+- +.++....+.++.+. 
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-   85 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK-   85 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh-
Confidence            35678999985   5899999988888999 5666655532   222 223345322222222 222333333444332 


Q ss_pred             CCCccEEEEccCCh--------------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          207 GSGIDVSFDCVGFD--------------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .+.+|+++++.|..              +               ..+.+.+.+..+|+++.++.
T Consensus        86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss  149 (272)
T PRK08159         86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTY  149 (272)
T ss_pred             cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            24799999998731              0               12344556677799887764

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.37  Score=40.36  Aligned_cols=104  Identities=16%  Similarity=0.219  Sum_probs=59.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-ChhHH-HHH---HHcCCC-EeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRL-SIA---RNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-~~~~~-~~~---~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      ++.+++|+| +|.+|..++..+...|.+ ++.+.+ ++.+. +..   +..+.. ..+..+ .+.++..+.++++.+.. 
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-   81 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAF-   81 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            467899998 699999999988888984 544443 33222 222   223321 111111 12223333334433322 


Q ss_pred             CCccEEEEccCCh----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +++|++|.+.|..          +               ..+.+.+.+...|+++.++.
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (245)
T PRK12937         82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST  140 (245)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence            4789999988842          0               12344556667789888874

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=95.59  E-value=0.21  Score=41.64  Aligned_cols=103  Identities=21%  Similarity=0.255  Sum_probs=65.2

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ...+++++++||=+|+|. |..+..+++..+. ..+++++.+++..+.+++.    +.+.+.....   +.    ..+. 
T Consensus        39 ~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~----~~~~-  109 (231)
T TIGR02752        39 KRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG---NA----MELP-  109 (231)
T ss_pred             HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe---ch----hcCC-
Confidence            456788999999999876 7677788887642 2799999998887766642    2222111111   11    1111 


Q ss_pred             hcCCCccEEEEccC-----C-hHHHHHHHHhhcCCCEEEEecc
Q 020928          205 AMGSGIDVSFDCVG-----F-DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       205 ~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .....+|+|+-+..     . ...+..+.+.|+++|+++....
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            01356899875322     1 2356778899999999987653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK06198 short chain dehydrogenase; Provisional

Probab=95.58  E-value=0.14  Score=43.41  Aligned_cols=83  Identities=18%  Similarity=0.284  Sum_probs=50.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH----HHHHcCCCEe-eccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS----IARNLGADET-AKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~----~~~~~g~~~v-~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      ++.+++|.| +|.+|..+++.+...|++.|+.+++++++.+    .+++.+.... +..+-. .++..+.+..+.+.. +
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   83 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF-G   83 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            467899998 5999999999888889854888877765443    2223333221 111211 222223333332222 3


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|.+|++.|.
T Consensus        84 ~id~li~~ag~   94 (260)
T PRK06198         84 RLDALVNAAGL   94 (260)
T ss_pred             CCCEEEECCCc
Confidence            69999999985

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=95.58  E-value=0.052  Score=45.48  Aligned_cols=106  Identities=23%  Similarity=0.386  Sum_probs=62.4

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      +....++|++||=.|+|. |..+..+++..+. ..|+++|.+++-++.+++    .+...+.-...+.++       +. 
T Consensus        41 ~~~~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~-------lp-  111 (233)
T PF01209_consen   41 KLLGLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAED-------LP-  111 (233)
T ss_dssp             HHHT--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----------
T ss_pred             hccCCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHH-------hc-
Confidence            346788999999988766 7788888888763 279999999988877765    222222111111111       11 


Q ss_pred             hcCCCccEEEEccCCh------HHHHHHHHhhcCCCEEEEecccCC
Q 020928          205 AMGSGIDVSFDCVGFD------KTMSTALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~------~~~~~~~~~l~~~G~~v~~g~~~~  244 (319)
                      ..++.+|.|.-+.|-.      ..+.++.+.|+|||+++.+....+
T Consensus       112 ~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p  157 (233)
T PF01209_consen  112 FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP  157 (233)
T ss_dssp             S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred             CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence            0245689998666542      467889999999999998875443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK07024 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.13  Score=43.74  Aligned_cols=81  Identities=19%  Similarity=0.159  Sum_probs=48.7

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCC-Ee--eccCC-CCcchhHHHHHhhhhcCCCc
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGAD-ET--AKVST-DIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~-~v--~~~~~-~~~~~~~~i~~~~~~~~~~~  210 (319)
                      +.+++|+| +|.+|..++..+...|+ .|+.+++++++.+.+. ++... .+  +..+- +.++..+.+.++.+.. +.+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~-g~i   79 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAH-GLP   79 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhC-CCC
Confidence            46899998 69999999998888898 6777877776654433 23211 11  11111 1223333333333322 358


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |+++.+.|.
T Consensus        80 d~lv~~ag~   88 (257)
T PRK07024         80 DVVIANAGI   88 (257)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK04266 fibrillarin; Provisional

Probab=95.57  E-value=0.36  Score=40.27  Aligned_cols=104  Identities=11%  Similarity=0.157  Sum_probs=61.8

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC--CCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG--ADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      +..+++++++||=.|+|+ |..+..+++..+...|++++.+++..+.+.+.-  ...+.....+..+. .....+    .
T Consensus        66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~-~~~~~l----~  139 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKP-ERYAHV----V  139 (226)
T ss_pred             hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCc-chhhhc----c
Confidence            457899999999888765 556667777765337999999997666443221  11111111111110 000011    2


Q ss_pred             CCccEEEEccCChH----HHHHHHHhhcCCCEEEEe
Q 020928          208 SGIDVSFDCVGFDK----TMSTALNATRPGGKVCLI  239 (319)
Q Consensus       208 ~~~d~v~d~~g~~~----~~~~~~~~l~~~G~~v~~  239 (319)
                      ..+|+++-....+.    .+..+.+.|+++|+++..
T Consensus       140 ~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        140 EKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             ccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            35999986554331    357788899999999873

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.56  E-value=0.79  Score=37.44  Aligned_cols=81  Identities=20%  Similarity=0.241  Sum_probs=53.5

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      -.|.+++|.|.|.+|..+.+.+...|+ +|++.+.++++.+.+++ +++..+ +  .  +       ++.   ...+|++
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~~v-~--~--~-------~l~---~~~~Dv~   89 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGATVV-A--P--E-------EIY---SVDADVF   89 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCEEE-c--c--h-------hhc---cccCCEE
Confidence            356889999999999999999999999 78888888877665544 454321 1  1  0       111   2357888


Q ss_pred             EEccCChHHHHHHHHhhc
Q 020928          214 FDCVGFDKTMSTALNATR  231 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~  231 (319)
                      +-|..+.......++.|+
T Consensus        90 vp~A~~~~I~~~~~~~l~  107 (200)
T cd01075          90 APCALGGVINDDTIPQLK  107 (200)
T ss_pred             EecccccccCHHHHHHcC
Confidence            865544334444555554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.56  E-value=0.074  Score=45.67  Aligned_cols=52  Identities=19%  Similarity=0.126  Sum_probs=41.1

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  179 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~  179 (319)
                      +++......+++++|+|+|+.+.+++..+...|+.++.++++++++.+.+.+
T Consensus       113 ~L~~~~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~  164 (272)
T PRK12550        113 LLASYQVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAE  164 (272)
T ss_pred             HHHhcCCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            4444344556789999999999999999999999889999998887665543

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.15  Score=43.13  Aligned_cols=82  Identities=18%  Similarity=0.220  Sum_probs=50.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      ++.+++|+| +|++|..++..+...|+ +|+.+++++++.+.+.    +.+... .+..+- +.++....+.++.+.. +
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   82 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF-G   82 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc-C
Confidence            357899998 59999999998888898 6777777776654332    223221 121121 1222333334443322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|++|.+.|.
T Consensus        83 ~id~li~~ag~   93 (254)
T PRK07478         83 GLDIAFNNAGT   93 (254)
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.55  E-value=0.14  Score=45.14  Aligned_cols=81  Identities=21%  Similarity=0.334  Sum_probs=48.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCC---C-EeeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA---D-ETAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~---~-~v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.+++|+| +|.+|..+++.+...|+ .|+.+++++++.+.+ +++..   . ..+..+ .+.++....+..+.+ ...
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~~~   82 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRA-LGK   82 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHH-hCC
Confidence            467899998 59999999988888898 677777777665433 33321   1 111111 112222223333322 234


Q ss_pred             CccEEEEccC
Q 020928          209 GIDVSFDCVG  218 (319)
Q Consensus       209 ~~d~v~d~~g  218 (319)
                      .+|++|++.|
T Consensus        83 ~iD~li~nAg   92 (322)
T PRK07453         83 PLDALVCNAA   92 (322)
T ss_pred             CccEEEECCc
Confidence            6999999987

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.55  E-value=0.19  Score=42.16  Aligned_cols=83  Identities=18%  Similarity=0.224  Sum_probs=50.5

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCE-eeccCC-CCcchhHHHHHhhhhcC
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADE-TAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      ....+++|.| +|.+|..++..+...|. +|+++++++++.+.+.+    .+... .+..+- +.++....+..+.+. .
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~   81 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ-F   81 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH-c
Confidence            3457899998 59999999998888898 68888887765443322    22211 122221 122222333333332 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|.++.+.|.
T Consensus        82 ~~id~lv~~ag~   93 (241)
T PRK07454         82 GCPDVLINNAGM   93 (241)
T ss_pred             CCCCEEEECCCc
Confidence            469999999884

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.53  E-value=0.15  Score=43.15  Aligned_cols=82  Identities=20%  Similarity=0.310  Sum_probs=49.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+    ++.|... .+..+- +.++....+.++.+. -+
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~   86 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAE-IG   86 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHh-cC
Confidence            467999998 59999999998888898 677787776654322    2222211 111111 122223333333322 34


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|.+|.+.|.
T Consensus        87 ~~d~li~~ag~   97 (255)
T PRK07523         87 PIDILVNNAGM   97 (255)
T ss_pred             CCCEEEECCCC
Confidence            68999999985

>PRK06483 dihydromonapterin reductase; Provisional

Probab=95.53  E-value=0.15  Score=42.60  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=48.7

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH-HHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccEE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~-~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      ++++||.| ++.+|..+++.+...|+ .|+.++++++. .+.+++.+.. .+..+ .+.++....+.++.+. -+++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~-~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQ-CIQADFSTNAGIMAFIDELKQH-TDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCE-EEEcCCCCHHHHHHHHHHHHhh-CCCccEE
Confidence            46889998 59999999998888898 57777665533 3334444532 22222 1222333334444332 2468999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      +++.|.
T Consensus        79 v~~ag~   84 (236)
T PRK06483         79 IHNASD   84 (236)
T ss_pred             EECCcc
Confidence            999874

>PRK06194 hypothetical protein; Provisional

Probab=95.52  E-value=0.16  Score=43.91  Aligned_cols=81  Identities=20%  Similarity=0.326  Sum_probs=48.4

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---CCCE-eeccCCC-CcchhHHHHHhhhhcCCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---GADE-TAKVSTD-IEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g~~~-v~~~~~~-~~~~~~~i~~~~~~~~~~  209 (319)
                      +.++||+| +|.+|..++..+...|. .|+.++++.++.+.. .++   +... .+..+-. .++....+..+.+. .++
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~-~g~   83 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER-FGA   83 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-cCC
Confidence            57899998 69999999988888898 677777766543332 222   3221 1222211 22222333333222 246


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|.+.|.
T Consensus        84 id~vi~~Ag~   93 (287)
T PRK06194         84 VHLLFNNAGV   93 (287)
T ss_pred             CCEEEECCCC
Confidence            8999999985

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.52  E-value=0.1  Score=44.36  Aligned_cols=97  Identities=19%  Similarity=0.297  Sum_probs=61.6

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .++.+||-+|+|. |..+..+++. |. .|++++.+++..+.+++.    |...-+.+..  .+    +..+.......+
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~--~d----~~~l~~~~~~~f  113 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH--CA----AQDIAQHLETPV  113 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEE--cC----HHHHhhhcCCCC
Confidence            4567888889877 7888888875 66 799999999888877653    2211111100  11    111211124579


Q ss_pred             cEEEEccC-----C-hHHHHHHHHhhcCCCEEEEec
Q 020928          211 DVSFDCVG-----F-DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       211 d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |+|+-...     . ...+..+.+.|+|+|+++.+-
T Consensus       114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            99874321     2 235778899999999997653

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.51  E-value=0.093  Score=40.55  Aligned_cols=117  Identities=17%  Similarity=0.226  Sum_probs=74.5

Q ss_pred             HHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC-CCEeeccCCCC-cchhHHHH
Q 020928          123 SVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-ADETAKVSTDI-EDVDTDVG  200 (319)
Q Consensus       123 ~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g-~~~v~~~~~~~-~~~~~~i~  200 (319)
                      +.||+.++..+.-.|.+|+-.|+|-.|++-+.+|...-.+.|-.++.+++..+.+++.- ......+++-. -.+. ...
T Consensus        16 ala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~-~~~   94 (201)
T KOG3201|consen   16 ALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL-IWG   94 (201)
T ss_pred             HHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH-Hhh
Confidence            45788887777777789999999999999999999888778999999998888777632 11111111100 0000 000


Q ss_pred             HhhhhcCCCccEEEE--ccCCh----HHHHHHHHhhcCCCEEEEec
Q 020928          201 KIQNAMGSGIDVSFD--CVGFD----KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       201 ~~~~~~~~~~d~v~d--~~g~~----~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .....-+..||+|+.  |+--+    ++...++.+|+|.|+-..+.
T Consensus        95 aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fs  140 (201)
T KOG3201|consen   95 AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFS  140 (201)
T ss_pred             hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEec
Confidence            001112457999864  44333    35566777899999966554

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.50  E-value=0.15  Score=43.62  Aligned_cols=81  Identities=14%  Similarity=0.177  Sum_probs=46.9

Q ss_pred             CCCeEEEECCC---HHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGSG---PIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~g---~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .+++++|.|++   ++|.++.+.+...|+ .|+.+++++...+.++++    +....+..+ .+.++....+.++.+. -
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~   82 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKV-W   82 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhh-c
Confidence            46789999853   799998887777898 566666653222333332    222222222 2223333344444332 2


Q ss_pred             CCccEEEEccC
Q 020928          208 SGIDVSFDCVG  218 (319)
Q Consensus       208 ~~~d~v~d~~g  218 (319)
                      +.+|+++++.|
T Consensus        83 g~iD~linnAg   93 (262)
T PRK07984         83 PKFDGFVHSIG   93 (262)
T ss_pred             CCCCEEEECCc
Confidence            46999999997

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=95.50  E-value=0.58  Score=40.08  Aligned_cols=101  Identities=20%  Similarity=0.274  Sum_probs=61.6

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ..+++++++||=.|+|+ |-.++.++...+ ...|++++.++++.+.+++    +|...+.....   |..    .+.. 
T Consensus        66 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~---D~~----~~~~-  136 (264)
T TIGR00446        66 ALEPDPPERVLDMAAAP-GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNF---DGR----VFGA-  136 (264)
T ss_pred             HhCCCCcCEEEEECCCc-hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecC---CHH----Hhhh-
Confidence            35678999988888766 555556666553 2279999999998776654    55543322211   111    1111 


Q ss_pred             cCCCccEEE-E--ccCC-------------------------hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSF-D--CVGF-------------------------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|.|| |  |.|.                         .+.+..+++.|+++|+++...
T Consensus       137 ~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       137 AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            123589886 3  3332                         125677788999999987543

>PRK05717 oxidoreductase; Validated

Probab=95.49  E-value=0.17  Score=42.92  Aligned_cols=82  Identities=21%  Similarity=0.285  Sum_probs=49.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCCE-eeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADE-TAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .+.+++|+| +|.+|..++..+...|+ +|+.+++++++.+ ..++++... .+..+- +..+....+.++.+.. +.+|
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~id   86 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQF-GRLD   86 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHh-CCCC
Confidence            467899998 69999999988888898 6777776665433 334444221 112111 1222223334443322 3689


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|.+.|.
T Consensus        87 ~li~~ag~   94 (255)
T PRK05717         87 ALVCNAAI   94 (255)
T ss_pred             EEEECCCc
Confidence            99998874

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.49  E-value=0.11  Score=45.84  Aligned_cols=80  Identities=18%  Similarity=0.312  Sum_probs=48.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-Hc----CCCEe----eccCCCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL----GADET----AKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~----g~~~v----~~~~~~~~~~~~~i~~~~~~  205 (319)
                      .|.+++|+| ++++|.+.+..+...|+ .|+.+++++++.+.+. ++    +...+    .|+..   +..+.+.++.+.
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~---~~~~~~~~l~~~  127 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG---DIDEGVKRIKET  127 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC---CcHHHHHHHHHH
Confidence            578999998 59999988887777898 5777888887765432 22    11121    22221   222333333332


Q ss_pred             c-CCCccEEEEccCC
Q 020928          206 M-GSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~-~~~~d~v~d~~g~  219 (319)
                      . +.++|+++++.|.
T Consensus       128 ~~~~didilVnnAG~  142 (320)
T PLN02780        128 IEGLDVGVLINNVGV  142 (320)
T ss_pred             hcCCCccEEEEecCc
Confidence            2 2356799998873

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.48  E-value=0.28  Score=43.52  Aligned_cols=90  Identities=21%  Similarity=0.246  Sum_probs=61.0

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|..+++.++.+|. .|++.+++.... ...+.+...        .+    +.++.    ...|+|+-
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~~~~~--------~~----l~ell----~~aDiV~l  210 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPE-AEKELGAEY--------RP----LEELL----RESDFVSL  210 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCChh-hHHHcCCEe--------cC----HHHHH----hhCCEEEE
Confidence            46899999999999999999999999 688888765432 223333211        01    22222    24688888


Q ss_pred             ccCChHH-----HHHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFDKT-----MSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~~~-----~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      ++.....     -...+..|+++..++.++...
T Consensus       211 ~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~  243 (333)
T PRK13243        211 HVPLTKETYHMINEERLKLMKPTAILVNTARGK  243 (333)
T ss_pred             eCCCChHHhhccCHHHHhcCCCCeEEEECcCch
Confidence            7765321     135677889999999887543

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.18  Score=43.10  Aligned_cols=82  Identities=18%  Similarity=0.228  Sum_probs=49.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HH---cCCC-EeeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RN---LGAD-ETAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~---~g~~-~v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      +++++||.| +|.+|..+++.+...|. .|+.+++++++.+.. ++   .+.. ..+..+-. .++....++++... .+
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~-~~   85 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADE-FG   85 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH-cC
Confidence            578999998 59999999998888898 688887776654322 22   2221 11222221 22233333333332 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|.+.|.
T Consensus        86 ~iD~vi~~ag~   96 (264)
T PRK07576         86 PIDVLVSGAAG   96 (264)
T ss_pred             CCCEEEECCCC
Confidence            68999988763

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.46  E-value=0.033  Score=43.13  Aligned_cols=100  Identities=14%  Similarity=0.168  Sum_probs=57.6

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      |+|+|+|++|......++..|. .|..+.+.+ +.+.+++.|......-....-......... ......+|++|-|+=.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP-SADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH-GHHHSTESEEEE-SSG
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc-hhccCCCcEEEEEecc
Confidence            6889999999988888877888 677777777 777777766432211000000000000000 0124679999998866


Q ss_pred             hH---HHHHHHHhhcCCCEEEEeccc
Q 020928          220 DK---TMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       220 ~~---~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      ..   .++.+.+.+.++..++.+...
T Consensus        78 ~~~~~~l~~l~~~~~~~t~iv~~qNG  103 (151)
T PF02558_consen   78 YQLEQALQSLKPYLDPNTTIVSLQNG  103 (151)
T ss_dssp             GGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred             cchHHHHHHHhhccCCCcEEEEEeCC
Confidence            42   334444455666677776543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.46  E-value=0.14  Score=43.26  Aligned_cols=81  Identities=19%  Similarity=0.228  Sum_probs=46.5

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHHH-HHcCCC-EeeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA-RNLGAD-ETAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~~-~~~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +.++||+| +|.+|..++..+...|++ |+.+ .+++++.+.+ .+++.. ..+..+- +.++....+.++.+..+.++|
T Consensus         5 ~k~ilItGas~gIG~~la~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id   83 (253)
T PRK08642          5 EQTVLVTGGSRGLGAAIARAFAREGAR-VVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPIT   83 (253)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCe
Confidence            46899998 699999999988888984 5444 4444443333 334321 1111111 222333344444433344599


Q ss_pred             EEEEccC
Q 020928          212 VSFDCVG  218 (319)
Q Consensus       212 ~v~d~~g  218 (319)
                      ++|.+.|
T Consensus        84 ~li~~ag   90 (253)
T PRK08642         84 TVVNNAL   90 (253)
T ss_pred             EEEECCC
Confidence            9999876

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.45  E-value=0.17  Score=42.95  Aligned_cols=79  Identities=27%  Similarity=0.307  Sum_probs=48.1

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---CCCEeeccC-CCCcchhHHHHHhhhhcCCCccE
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---GADETAKVS-TDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      ++||+| ++++|..+++.+...|+ .|+.+++++++.+.+ +++   +....+..+ .+.++....+.++.+. -+++|+
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~-~g~id~   79 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWEL-LGGIDA   79 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHh-cCCCCE
Confidence            689998 59999999988888898 677777877654433 222   211222222 1222333334443332 247999


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      +|++.|.
T Consensus        80 li~naG~   86 (259)
T PRK08340         80 LVWNAGN   86 (259)
T ss_pred             EEECCCC
Confidence            9999884

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.45  E-value=0.12  Score=46.84  Aligned_cols=72  Identities=19%  Similarity=0.369  Sum_probs=54.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .+.++||+|+|-+|..++..+...|+..+.++.++.++.+ +++++|+..+ .++        .+...    -..+|+||
T Consensus       177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~-~l~--------el~~~----l~~~DvVi  243 (414)
T COG0373         177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAV-ALE--------ELLEA----LAEADVVI  243 (414)
T ss_pred             ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeee-cHH--------HHHHh----hhhCCEEE
Confidence            6788999999999999999999999888999988887654 6677884332 221        11111    14689999


Q ss_pred             EccCCh
Q 020928          215 DCVGFD  220 (319)
Q Consensus       215 d~~g~~  220 (319)
                      .+++.+
T Consensus       244 ssTsa~  249 (414)
T COG0373         244 SSTSAP  249 (414)
T ss_pred             EecCCC
Confidence            999986

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.45  E-value=0.1  Score=48.73  Aligned_cols=77  Identities=21%  Similarity=0.325  Sum_probs=51.9

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh---------------------hHHHHHHHcCCCEeeccCCCCcc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV---------------------QRLSIARNLGADETAKVSTDIED  194 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~---------------------~~~~~~~~~g~~~v~~~~~~~~~  194 (319)
                      ++++|+|+|+|+.|+.+...++..|. .|++++..+                     ...+.++++|.+...+..- ..+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v-~~~  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV-GRD  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe-CCc
Confidence            57899999999999999999999999 576666543                     2456777888654432110 011


Q ss_pred             hhHHHHHhhhhcCCCccEEEEccCCh
Q 020928          195 VDTDVGKIQNAMGSGIDVSFDCVGFD  220 (319)
Q Consensus       195 ~~~~i~~~~~~~~~~~d~v~d~~g~~  220 (319)
                      .  .+..+.    .++|.||.++|..
T Consensus       218 ~--~~~~~~----~~~D~vilAtGa~  237 (467)
T TIGR01318       218 I--SLDDLL----EDYDAVFLGVGTY  237 (467)
T ss_pred             c--CHHHHH----hcCCEEEEEeCCC
Confidence            1  111221    3699999999975

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06953 short chain dehydrogenase; Provisional

Probab=95.44  E-value=0.13  Score=42.65  Aligned_cols=77  Identities=27%  Similarity=0.330  Sum_probs=48.3

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhh-hcCCCccEEEE
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN-AMGSGIDVSFD  215 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~-~~~~~~d~v~d  215 (319)
                      .+++|+| +|.+|..+++.+...|+ +|+.++++++..+.++..+... +..+-.+.   +.+..+.+ ..+.++|+++.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~-~~~D~~~~---~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEA-LALDVADP---ASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceE-EEecCCCH---HHHHHHHHHhcCCCCCEEEE
Confidence            4688888 69999999887777898 6788888877766666555322 22221111   12222221 12346999999


Q ss_pred             ccCC
Q 020928          216 CVGF  219 (319)
Q Consensus       216 ~~g~  219 (319)
                      +.|.
T Consensus        77 ~ag~   80 (222)
T PRK06953         77 VAGV   80 (222)
T ss_pred             CCCc
Confidence            8775

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.41  E-value=0.064  Score=45.89  Aligned_cols=78  Identities=24%  Similarity=0.260  Sum_probs=48.6

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEe-eccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      +.+++|+| +|.+|..+++.+...|+ .|+++++++++.+..  .+...+ .|+ .+.+++...+..+.+. .+.+|++|
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~--~~~~~~~~D~-~d~~~~~~~~~~~~~~-~g~~d~li   78 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPI--PGVELLELDV-TDDASVQAAVDEVIAR-AGRIDVLV   78 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccc--CCCeeEEeec-CCHHHHHHHHHHHHHh-CCCCCEEE
Confidence            56789998 59999999988888898 678887776554321  122111 122 2223334444444333 24699999


Q ss_pred             EccCC
Q 020928          215 DCVGF  219 (319)
Q Consensus       215 d~~g~  219 (319)
                      ++.|.
T Consensus        79 ~~ag~   83 (270)
T PRK06179         79 NNAGV   83 (270)
T ss_pred             ECCCC
Confidence            99985

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.41  E-value=0.26  Score=43.35  Aligned_cols=94  Identities=12%  Similarity=0.180  Sum_probs=56.6

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +|||+| +|-+|..++..+...|. .|.+++++.++...+...+...+. .+-.  +. ..+....    .++|+||+++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~-~Dl~--d~-~~l~~al----~g~d~Vi~~~   72 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVY-GDLS--LP-ETLPPSF----KGVTAIIDAS   72 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEE-CCCC--CH-HHHHHHH----CCCCEEEECC
Confidence            689998 59999999998888898 677777776665554444543321 1111  11 1222222    3689999987


Q ss_pred             CChH------------HHHHHHHhhcCCC--EEEEecc
Q 020928          218 GFDK------------TMSTALNATRPGG--KVCLIGL  241 (319)
Q Consensus       218 g~~~------------~~~~~~~~l~~~G--~~v~~g~  241 (319)
                      +...            ....+++.++..|  +++.++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss  110 (317)
T CHL00194         73 TSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI  110 (317)
T ss_pred             CCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence            6320            1123444444444  7887765

>PRK12747 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.39  Score=40.53  Aligned_cols=105  Identities=16%  Similarity=0.216  Sum_probs=58.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHH-HHHHH---cCCC-EeeccCC-CCcchhHHHHHhhhh--
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRL-SIARN---LGAD-ETAKVST-DIEDVDTDVGKIQNA--  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~-~~~~~---~g~~-~v~~~~~-~~~~~~~~i~~~~~~--  205 (319)
                      .+.+++|+| ++.+|.++++.+...|+ .|+.. .+.+++. +...+   .+.. ..+..+- ..++....+.++.+.  
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   81 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence            467899998 69999999998888998 45554 3443332 22222   2221 1111111 111222223333221  


Q ss_pred             --cC-CCccEEEEccCCh----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          206 --MG-SGIDVSFDCVGFD----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       206 --~~-~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                        .+ .++|+++++.|..          +               ..+.+++.+...|+++.++.
T Consensus        82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS  145 (252)
T PRK12747         82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISS  145 (252)
T ss_pred             hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECC
Confidence              12 3799999998841          0               12345566667799998875

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.39  E-value=0.18  Score=42.59  Aligned_cols=82  Identities=22%  Similarity=0.303  Sum_probs=49.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCC-EeeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGAD-ETAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~-~v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      ++.+++|.| +|.+|..+++.+...|. +|+.+++++++.+.+    ++.+.. ..+..+-. ..+....+.++.+.. +
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~-g   83 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY-G   83 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh-C
Confidence            467899998 59999999988888898 688888877654322    233322 11211211 122223333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|+++.+.|.
T Consensus        84 ~id~li~~ag~   94 (253)
T PRK06172         84 RLDYAFNNAGI   94 (253)
T ss_pred             CCCEEEECCCC
Confidence            68999999874

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=95.38  E-value=0.24  Score=41.53  Aligned_cols=105  Identities=18%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .+..++++||-+|+|. |..++.+++..+ ..++++++.+++..+.+++    .|...-+.+  ...+..+.+.++....
T Consensus        64 ~~~~~~~~vLEiGt~~-G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~--~~gda~~~L~~l~~~~  140 (234)
T PLN02781         64 VKIMNAKNTLEIGVFT-GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINF--IQSDALSALDQLLNND  140 (234)
T ss_pred             HHHhCCCEEEEecCcc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE--EEccHHHHHHHHHhCC
Confidence            5567788999999754 666667777653 3389999999988777655    443322221  1234444444443221


Q ss_pred             -CCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEe
Q 020928          207 -GSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       207 -~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~  239 (319)
                       ...||.||--..-   ...+..+.+.++++|.++.-
T Consensus       141 ~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        141 PKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence             3579999744321   24577888999999987753

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.19  Score=44.14  Aligned_cols=82  Identities=16%  Similarity=0.220  Sum_probs=48.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc----CCCEe--eccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL----GADET--AKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~----g~~~v--~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      .+.+++|+| ++++|..++..+...|+ +|+.+.+++++.+.+ +++    +...+  +..+ .+.++......++.+. 
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~-   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE-   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh-
Confidence            367899998 59999999988878898 677777776654322 222    11111  1111 1122222233333322 


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                      .+.+|++|++.|.
T Consensus        91 ~~~iD~li~nAG~  103 (313)
T PRK05854         91 GRPIHLLINNAGV  103 (313)
T ss_pred             CCCccEEEECCcc
Confidence            3578999998874

>PRK07985 oxidoreductase; Provisional

Probab=95.36  E-value=0.44  Score=41.43  Aligned_cols=104  Identities=16%  Similarity=0.153  Sum_probs=59.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh--hHHHHH----HHcCCCE-eeccCC-CCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSIA----RNLGADE-TAKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~--~~~~~~----~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      ++.++||.| +|.+|.++++.+...|+ .|+.+.++.  ++.+.+    ++.+... .+..+- +.++....+.++.+. 
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-  125 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA-  125 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            457899998 59999999998888898 566654332  222222    2233221 121121 222333333333332 


Q ss_pred             CCCccEEEEccCCh--------------------------HHHHHHHHhhcCCCEEEEecc
Q 020928          207 GSGIDVSFDCVGFD--------------------------KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      -+++|+++.+.|..                          ...+.+.+.+..+|+++.++.
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS  186 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS  186 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence            34789999887731                          023344555667789988774

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=95.35  E-value=0.18  Score=49.30  Aligned_cols=114  Identities=23%  Similarity=0.394  Sum_probs=65.5

Q ss_pred             cceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhc---CCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe
Q 020928           92 SLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA---NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT  167 (319)
Q Consensus        92 ~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~---~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v  167 (319)
                      +..+|..+++...+.+ +-+++|++-+           ++.   ..-.++++||+| +|.+|..+++.+...|+ .|+.+
T Consensus       378 ~~~~~~~~~~~~~f~~-eyw~~e~~kl-----------~~~~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~  444 (676)
T TIGR02632       378 AVSEYVSLPEQEAFDI-EYWPLEEAKL-----------RRMPKEKTLARRVAFVTGGAGGIGRETARRLAAEGA-HVVLA  444 (676)
T ss_pred             cccceecCchhhccch-hhhhhhHHhh-----------ccCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEE
Confidence            3455666666666666 5555555521           111   111367899998 69999999998888898 68888


Q ss_pred             cCChhHHHHHH-Hc----CCCEe--eccC-CCCcchhHHHHHhhhhcCCCccEEEEccCC
Q 020928          168 DVDVQRLSIAR-NL----GADET--AKVS-TDIEDVDTDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       168 ~~~~~~~~~~~-~~----g~~~v--~~~~-~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      +++.++.+.+. ++    +...+  +..+ .+..++...+.++.+. -+++|++|++.|.
T Consensus       445 ~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~-~g~iDilV~nAG~  503 (676)
T TIGR02632       445 DLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA-YGGVDIVVNNAGI  503 (676)
T ss_pred             eCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh-cCCCcEEEECCCC
Confidence            78776554332 22    22111  1111 1222333333333332 3479999999985

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.33  E-value=0.11  Score=41.07  Aligned_cols=93  Identities=22%  Similarity=0.332  Sum_probs=58.4

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +|.|+| +|-+|...++-|+.+|. .|.++.+++++....+..-.   .  ..+--+... +..    .=.++|+||++.
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i---~--q~Difd~~~-~a~----~l~g~DaVIsA~   70 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTI---L--QKDIFDLTS-LAS----DLAGHDAVISAF   70 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhcccccccee---e--cccccChhh-hHh----hhcCCceEEEec
Confidence            578888 59999999999999998 68888898888654321111   0  010001111 111    124899999999


Q ss_pred             CCh---------HHHHHHHHhhcCCC--EEEEeccc
Q 020928          218 GFD---------KTMSTALNATRPGG--KVCLIGLA  242 (319)
Q Consensus       218 g~~---------~~~~~~~~~l~~~G--~~v~~g~~  242 (319)
                      |..         ...+.+...|+..|  |+..+|..
T Consensus        71 ~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGA  106 (211)
T COG2910          71 GAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGA  106 (211)
T ss_pred             cCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence            875         12344666676644  77777753

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=95.33  E-value=0.16  Score=41.62  Aligned_cols=99  Identities=14%  Similarity=0.104  Sum_probs=63.0

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++.+||-+|+|. |..+..+++......+++++.+++..+.+++    .+...+....   .+....+...  .....+|
T Consensus        40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~---~d~~~~l~~~--~~~~~~D  113 (202)
T PRK00121         40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLC---GDAVEVLLDM--FPDGSLD  113 (202)
T ss_pred             CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEe---cCHHHHHHHH--cCccccc
Confidence            667888899877 7788888887654479999999988877764    2322221111   1221122111  1234688


Q ss_pred             EEEEccC--------------ChHHHHHHHHhhcCCCEEEEec
Q 020928          212 VSFDCVG--------------FDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       212 ~v~d~~g--------------~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .|+-...              ....++.+.+.|+++|.++...
T Consensus       114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            8875432              1346788899999999998653

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.33  E-value=0.18  Score=42.78  Aligned_cols=82  Identities=23%  Similarity=0.304  Sum_probs=50.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc-----CCC-EeeccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL-----GAD-ETAKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~-----g~~-~v~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      .+++++|.| +|++|..+++.+...|+ .|+.+++++++.+.+ +++     +.. ..+..+ .+.++....+.++.+..
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            367899998 59999999998888898 677777776654433 222     211 111111 12223333444443322


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                       +.+|++|.+.|.
T Consensus        85 -g~id~li~~ag~   96 (260)
T PRK07063         85 -GPLDVLVNNAGI   96 (260)
T ss_pred             -CCCcEEEECCCc
Confidence             479999999884

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.32  E-value=0.2  Score=42.30  Aligned_cols=82  Identities=16%  Similarity=0.244  Sum_probs=49.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H---cCCC-EeeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N---LGAD-ETAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~---~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      ++.++||.| +|.+|..+++.+...|. +|+.++++.++.+.+. +   .+.. ..+..+ .+..+....+.++.+.. +
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   84 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERH-G   84 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-C
Confidence            357899998 69999999998888898 6888888766544332 2   2221 112111 12222333333333322 3


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|+++.+.|.
T Consensus        85 ~id~li~~ag~   95 (252)
T PRK07035         85 RLDILVNNAAA   95 (252)
T ss_pred             CCCEEEECCCc
Confidence            68999998873

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.32  E-value=0.21  Score=43.86  Aligned_cols=90  Identities=12%  Similarity=0.141  Sum_probs=60.1

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+.+|.|+|.|.+|....+.++.+|. +|.+.+++.++..     +.....   .     ...+.++.    ...|+|+-
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~-----~~~~~~---~-----~~~l~e~l----~~aDvvv~  196 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWP-----GVQSFA---G-----REELSAFL----SQTRVLIN  196 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCC-----Cceeec---c-----cccHHHHH----hcCCEEEE
Confidence            57899999999999999999999999 6778776543311     111111   0     01222232    35789988


Q ss_pred             ccCChHHH-----HHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFDKTM-----STALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~~~~-----~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +.......     ...++.|+++..++.++...
T Consensus       197 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~  229 (312)
T PRK15469        197 LLPNTPETVGIINQQLLEQLPDGAYLLNLARGV  229 (312)
T ss_pred             CCCCCHHHHHHhHHHHHhcCCCCcEEEECCCcc
Confidence            88754322     34677899999999887543

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.31  E-value=0.69  Score=38.32  Aligned_cols=91  Identities=13%  Similarity=0.073  Sum_probs=54.4

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC--ChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~--~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      ++.+|||+|+|.++.-=+..+...|+ .|.+++.  +++-.++. +.+.-..+.   .  ++...  .     -.++++|
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~-~~~~i~~~~---r--~~~~~--d-----l~g~~LV   89 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLK-KYGNLKLIK---G--NYDKE--F-----IKDKHLI   89 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHH-hCCCEEEEe---C--CCChH--H-----hCCCcEE
Confidence            46799999999999887888878898 4555533  22222222 222211111   1  11111  1     1468999


Q ss_pred             EEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          214 FDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |-|++.++.-+.+....+..+.++...
T Consensus        90 iaATdD~~vN~~I~~~a~~~~~lvn~v  116 (223)
T PRK05562         90 VIATDDEKLNNKIRKHCDRLYKLYIDC  116 (223)
T ss_pred             EECCCCHHHHHHHHHHHHHcCCeEEEc
Confidence            999998865556666666667666554

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.31  E-value=0.19  Score=42.57  Aligned_cols=82  Identities=20%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH---HHHHcCCC-EeeccCC-CCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS---IARNLGAD-ETAKVST-DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~---~~~~~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~  209 (319)
                      .+.++||+| +|.+|..+++.+...|+ .|+.+.++++..+   .+.+.+.. ..+..+- +.++....+.++.+. .+.
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~-~g~   91 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE-FGK   91 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-cCC
Confidence            468999998 59999999998888899 5666666532222   22233322 1122222 122333334444332 246


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|.++.+.|.
T Consensus        92 id~li~~ag~  101 (258)
T PRK06935         92 IDILVNNAGT  101 (258)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.30  E-value=0.2  Score=42.23  Aligned_cols=82  Identities=22%  Similarity=0.289  Sum_probs=48.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HHHc--CCC-EeeccCCC-CcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNL--GAD-ETAKVSTD-IEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~~~--g~~-~v~~~~~~-~~~~~~~i~~~~~~~~~~  209 (319)
                      ++.+++|.| +|.+|..+++.+...|. +|+.+.++.++.+. .+++  +.. ..+..+-. .++..+.+.++.+.. ++
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~-~~   81 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARW-GR   81 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-CC
Confidence            357899998 59999999987777898 67777777654433 2222  221 12222221 222223333333322 47


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|+++.+.|.
T Consensus        82 id~vi~~ag~   91 (252)
T PRK06138         82 LDVLVNNAGF   91 (252)
T ss_pred             CCEEEECCCC
Confidence            9999999884

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.30  E-value=0.11  Score=50.40  Aligned_cols=77  Identities=23%  Similarity=0.288  Sum_probs=52.5

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChh---------------------HHHHHHHcCCCEeeccCCCCcc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ---------------------RLSIARNLGADETAKVSTDIED  194 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~---------------------~~~~~~~~g~~~v~~~~~~~~~  194 (319)
                      .+++|+|+|+|+.|+.++..++..|. .|++++..+.                     ..++++++|.+...+..- ..+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v-~~~  386 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI-GRD  386 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc-CCc
Confidence            48999999999999999999999999 5777765542                     456777788655433211 111


Q ss_pred             hhHHHHHhhhhcCCCccEEEEccCCh
Q 020928          195 VDTDVGKIQNAMGSGIDVSFDCVGFD  220 (319)
Q Consensus       195 ~~~~i~~~~~~~~~~~d~v~d~~g~~  220 (319)
                      .  .+..+    ..++|.||.++|..
T Consensus       387 ~--~~~~l----~~~~DaV~latGa~  406 (639)
T PRK12809        387 I--TFSDL----TSEYDAVFIGVGTY  406 (639)
T ss_pred             C--CHHHH----HhcCCEEEEeCCCC
Confidence            1  12222    23689999999974

>PLN03013 cysteine synthase

Probab=95.29  E-value=0.45  Score=43.52  Aligned_cols=110  Identities=16%  Similarity=0.222  Sum_probs=69.5

Q ss_pred             HhcCCCCCCeEEEE-CCCHHHHHHHHHHHHcCCCeEEEec--CChhHHHHHHHcCCCEeeccCCCC--------------
Q 020928          130 RRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDI--------------  192 (319)
Q Consensus       130 ~~~~~~~~~~vlI~-G~g~vG~~ai~la~~~g~~~vv~v~--~~~~~~~~~~~~g~~~v~~~~~~~--------------  192 (319)
                      +.+.+++|.+.+|. -+|+.|++....++.+|++.++++.  .++++.+.++.+|+..+.. ....              
T Consensus       167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v-~~~~~~~~a~~~A~ela~  245 (429)
T PLN03013        167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLT-DPAKGMTGAVQKAEEILK  245 (429)
T ss_pred             HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEE-CCCCChHHHHHHHHHHHh
Confidence            34667888666665 4799999999999999997666653  4667888999999866532 1100              


Q ss_pred             -------------cchh-----HHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhc---CCCEEEEec
Q 020928          193 -------------EDVD-----TDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATR---PGGKVCLIG  240 (319)
Q Consensus       193 -------------~~~~-----~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~---~~G~~v~~g  240 (319)
                                   +...     ..-.++.++.+..+|+++-.+|+..++..+.+.++   |+=+++.+.
T Consensus       246 ~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVe  314 (429)
T PLN03013        246 NTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVE  314 (429)
T ss_pred             hcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEE
Confidence                         0000     00013333333468888888888766666666554   333565554

>PRK06701 short chain dehydrogenase; Provisional

Probab=95.29  E-value=0.58  Score=40.58  Aligned_cols=105  Identities=17%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh-HHH----HHHHcCCCE-eeccCC-CCcchhHHHHHhhhhc
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ-RLS----IARNLGADE-TAKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~-~~~----~~~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      -++.++||.| +|.+|..++..+...|+ .|+.+.++++ ..+    .++..+... .+..+- +..+....+.++.+..
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~  122 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL  122 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3467899998 59999999987777898 5666655432 111    222223221 121121 1222223333333322


Q ss_pred             CCCccEEEEccCCh--------------------------HHHHHHHHhhcCCCEEEEecc
Q 020928          207 GSGIDVSFDCVGFD--------------------------KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~  241 (319)
                       +++|++|.+.|..                          ...+.+.+.+.+.|+++.++.
T Consensus       123 -~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        123 -GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             -CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence             4689999988741                          012333445566789988875

>PRK03612 spermidine synthase; Provisional

Probab=95.29  E-value=0.21  Score=47.28  Aligned_cols=102  Identities=15%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC-CCEe----ec---cCCCCcchhHHHHHhhhh
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-ADET----AK---VSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g-~~~v----~~---~~~~~~~~~~~i~~~~~~  205 (319)
                      .+++++||++|+|. |..+..+++.-...++.+++.+++-.+.+++.. ....    .+   .+-...|..+.++    .
T Consensus       295 ~~~~~rVL~IG~G~-G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~----~  369 (521)
T PRK03612        295 SARPRRVLVLGGGD-GLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR----K  369 (521)
T ss_pred             CCCCCeEEEEcCCc-cHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH----h
Confidence            35678999998765 667777777545468999999999999988721 1100    00   0001122222222    2


Q ss_pred             cCCCccEEEEccCCh-----------HHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVGFD-----------KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~-----------~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+|+-....+           +.++.+.+.|+++|.++.-.
T Consensus       370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            345899987544321           35678889999999987643

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.29  E-value=0.2  Score=42.35  Aligned_cols=82  Identities=20%  Similarity=0.240  Sum_probs=49.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh--HHHHHHHcCCCE-eeccC-CCCcchhHHHHHhhhhcCCCc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ--RLSIARNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~--~~~~~~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      +++++||+| ++++|.++++.+...|+ +|+.+++++.  ..+.+++.+... .+..+ .+.++....+.++.+.. +++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~i   84 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM-GHI   84 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc-CCC
Confidence            468899998 69999999998888999 5666665432  223334444321 12112 22233334444443322 469


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |+++++.|.
T Consensus        85 D~lv~~ag~   93 (251)
T PRK12481         85 DILINNAGI   93 (251)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.29  E-value=0.23  Score=42.14  Aligned_cols=82  Identities=16%  Similarity=0.283  Sum_probs=48.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH----HHHcCCCEe-eccCCCC-cchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI----ARNLGADET-AKVSTDI-EDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~----~~~~g~~~v-~~~~~~~-~~~~~~i~~~~~~~~~  208 (319)
                      ++.++||+| +|.+|..+++.+...|. .|+.+++++++.+.    +++.+.... +..+-.+ ......+..+... -+
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~   83 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAER-FG   83 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHH-cC
Confidence            467899998 59999999998888898 57777777654432    223343221 1112111 1222222333222 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|++|.+.|.
T Consensus        84 ~~d~vi~~ag~   94 (262)
T PRK13394         84 SVDILVSNAGI   94 (262)
T ss_pred             CCCEEEECCcc
Confidence            68999998875

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.28  E-value=0.16  Score=44.41  Aligned_cols=108  Identities=16%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             HHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEecCChhHHH-HHHHcCCCEeeccCCCCcchhHHHH
Q 020928          123 SVGVHACRRANVGPETNVMIMGSGPIGLVTLLAAR-AFGAPRIIITDVDVQRLS-IARNLGADETAKVSTDIEDVDTDVG  200 (319)
Q Consensus       123 ~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~-~~g~~~vv~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i~  200 (319)
                      +.+..+.+...-+...+++|+|+|..|...+..+. ..+.+.|.+.++++++.+ +++++.... +...  ..+..+.+ 
T Consensus       111 A~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~--~~~~~~av-  186 (304)
T PRK07340        111 AVSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAE--PLDGEAIP-  186 (304)
T ss_pred             HHHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeE--ECCHHHHh-
Confidence            33333444433356689999999999988888765 478878999999887755 444443211 0000  01111111 


Q ss_pred             HhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          201 KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       201 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                             .+.|+|+.|..+...+-..  .++++-.+..+|...
T Consensus       187 -------~~aDiVitaT~s~~Pl~~~--~~~~g~hi~~iGs~~  220 (304)
T PRK07340        187 -------EAVDLVVTATTSRTPVYPE--AARAGRLVVAVGAFT  220 (304)
T ss_pred             -------hcCCEEEEccCCCCceeCc--cCCCCCEEEecCCCC
Confidence                   3789999998876433222  478888888888644

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=95.28  E-value=0.19  Score=42.59  Aligned_cols=81  Identities=11%  Similarity=0.199  Sum_probs=48.0

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H----cCCCEe--eccCCC-CcchhHHHHHhhhhcC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N----LGADET--AKVSTD-IEDVDTDVGKIQNAMG  207 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~----~g~~~v--~~~~~~-~~~~~~~i~~~~~~~~  207 (319)
                      ++++||.| +|.+|..++..+...|+ .|+.++++.++.+.+. +    .+...+  +..+-. .++....+.++.+.. 
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~-   79 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIF-   79 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHc-
Confidence            46899998 59999999988888898 6778877765543322 1    121122  222221 122222333333322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +.+|.++++.|.
T Consensus        80 ~~id~vv~~ag~   91 (259)
T PRK12384         80 GRVDLLVYNAGI   91 (259)
T ss_pred             CCCCEEEECCCc
Confidence            478999999874

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.26  E-value=0.78  Score=37.98  Aligned_cols=96  Identities=20%  Similarity=0.181  Sum_probs=57.0

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh----------hHHHHHHHcCCCEeeccCCCCcchhHHHHHhhh
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV----------QRLSIARNLGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~----------~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      -.+.+|+|.|.|.+|..+++++...|.+.|.+.+.+.          +..+..++.+....  +..  .+... -..+. 
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~--~~~--~~~~~-~~~l~-   94 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSAR--VKV--QDYFP-GEAIL-   94 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccc--cCc--ccccC-cccce-
Confidence            3578999999999999999999999986666667666          56665555442211  110  00000 00111 


Q ss_pred             hcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                        ..++|+++-|..+...-......++  .+++.-+
T Consensus        95 --~~~~DVlipaA~~~~i~~~~a~~l~--a~~V~e~  126 (217)
T cd05211          95 --GLDVDIFAPCALGNVIDLENAKKLK--AKVVAEG  126 (217)
T ss_pred             --eccccEEeeccccCccChhhHhhcC--ccEEEeC
Confidence              2368888888876533333333333  4455444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.26  E-value=0.2  Score=43.00  Aligned_cols=81  Identities=17%  Similarity=0.237  Sum_probs=48.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---CCC-EeeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---GAD-ETAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g~~-~v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      .+.+++|.| +|.+|..++..+...|. .|+.+++++++.+.+ +++   +.. ..+..+-. ..+....+.++.+. -+
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~g   86 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILED-FG   86 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-cC
Confidence            467899998 59999999998888898 677777776544332 222   221 11111211 12222333333322 24


Q ss_pred             CccEEEEccC
Q 020928          209 GIDVSFDCVG  218 (319)
Q Consensus       209 ~~d~v~d~~g  218 (319)
                      .+|++|.+.|
T Consensus        87 ~id~li~~ag   96 (278)
T PRK08277         87 PCDILINGAG   96 (278)
T ss_pred             CCCEEEECCC
Confidence            7999999987

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.47  Score=40.80  Aligned_cols=100  Identities=21%  Similarity=0.325  Sum_probs=57.4

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---CCCE-eeccCC-CCcchhHHHHHhhhhcCCCc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---GADE-TAKVST-DIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~~  210 (319)
                      +++++|.|+|++|..++..+. .|. .|+.+++++++.+.+ +++   +... .+..+- +.++....+..+ +. .+++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~-~~-~g~i   77 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA-QT-LGPV   77 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH-Hh-cCCC
Confidence            357788898999998888774 787 677777776654332 222   3221 122221 222333333333 22 2479


Q ss_pred             cEEEEccCChH------------------HHHHHHHhhcCCCEEEEec
Q 020928          211 DVSFDCVGFDK------------------TMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       211 d~v~d~~g~~~------------------~~~~~~~~l~~~G~~v~~g  240 (319)
                      |++|++.|...                  ..+.+.+.+..+|+++.++
T Consensus        78 d~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~is  125 (275)
T PRK06940         78 TGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIA  125 (275)
T ss_pred             CEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEE
Confidence            99999998521                  1334445566667766655

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.24  E-value=0.31  Score=41.88  Aligned_cols=114  Identities=15%  Similarity=0.191  Sum_probs=65.2

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCCE-eeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADE-TAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~~-v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ..++++++|+|+|++|.+++..+...|. .+.+.++++++.+ +++++.... +...     ..    ...   ....+|
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~-----~~----~~~---~~~~~D  180 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAF-----SM----DEL---PLHRVD  180 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEe-----ch----hhh---cccCcc
Confidence            3457889999999999999988888897 7888888876654 334333210 1100     00    001   123689


Q ss_pred             EEEEccCChH--HH---HHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEE
Q 020928          212 VSFDCVGFDK--TM---STALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVI  261 (319)
Q Consensus       212 ~v~d~~g~~~--~~---~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~  261 (319)
                      +||+|++..-  ..   ......++++..++.+...+... ........++.++.
T Consensus       181 ivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T-~ll~~A~~~G~~~v  234 (270)
T TIGR00507       181 LIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGET-PFLAEAKSLGTKTI  234 (270)
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCC-HHHHHHHHCCCeee
Confidence            9999998630  01   11234567777777665433332 22333444555544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.23  E-value=0.23  Score=42.17  Aligned_cols=82  Identities=20%  Similarity=0.291  Sum_probs=50.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCE-eeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADE-TAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~-v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      ++.++||.| +|.+|..+++.+...|+ .|+.++++.++.+.+.+    .+... .+..+-. .++....+.++.+.. .
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~-~   88 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF-G   88 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            467899998 69999999998888898 67888887766554432    22211 1211211 222223333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|.+|.+.|.
T Consensus        89 ~id~vi~~ag~   99 (259)
T PRK08213         89 HVDILVNNAGA   99 (259)
T ss_pred             CCCEEEECCCC
Confidence            68999999874

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.22  Score=42.18  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=49.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c---CCC-EeeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L---GAD-ETAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~---g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.++||.| +|.+|..++..+...|. .|+.+++++++.+.+.+ +   +.. ..+..+- +.++....+.+..+.. +
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   81 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERF-G   81 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHc-C
Confidence            567899998 59999999998888998 68888777765443322 2   221 1121111 2223333333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|++|.+.|.
T Consensus        82 ~~d~vi~~ag~   92 (258)
T PRK07890         82 RVDALVNNAFR   92 (258)
T ss_pred             CccEEEECCcc
Confidence            68999998874

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.21  E-value=0.22  Score=42.66  Aligned_cols=82  Identities=18%  Similarity=0.249  Sum_probs=48.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcC----CCE--eeccCC-CCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLG----ADE--TAKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g----~~~--v~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      ++.++||.| +|.+|..+++.+...|+ .|+.+++++++.+.. +++.    ...  .+..+- +.++....+.+..+. 
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-   83 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW-   83 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH-
Confidence            367999998 59999999998888898 677777776554322 2221    111  111111 112222233333222 


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                      .+++|++|.+.|.
T Consensus        84 ~~~~d~li~~ag~   96 (276)
T PRK05875         84 HGRLHGVVHCAGG   96 (276)
T ss_pred             cCCCCEEEECCCc
Confidence            2468999998873

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.21  E-value=0.23  Score=41.93  Aligned_cols=82  Identities=27%  Similarity=0.481  Sum_probs=49.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---CCC-EeeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---GAD-ETAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g~~-~v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+ .++   +.. ..+..+-. ..++...+..+.+. .+
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~   85 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD-IG   85 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh-cC
Confidence            467899998 59999999998888898 677787776554322 222   221 11222222 22223333333322 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|+++.+.|.
T Consensus        86 ~id~vi~~ag~   96 (254)
T PRK08085         86 PIDVLINNAGI   96 (254)
T ss_pred             CCCEEEECCCc
Confidence            69999999984

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.19  E-value=0.38  Score=42.38  Aligned_cols=90  Identities=20%  Similarity=0.327  Sum_probs=61.4

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE-E
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS-F  214 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v-~  214 (319)
                      .|.++.|+|.|.+|++..+.++.+|. +|+..++++. .+..++.++..+        +    +.++.    ...|++ +
T Consensus       145 ~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~-~~~~~~~~~~y~--------~----l~ell----~~sDii~l  206 (324)
T COG1052         145 RGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN-PEAEKELGARYV--------D----LDELL----AESDIISL  206 (324)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC-hHHHhhcCceec--------c----HHHHH----HhCCEEEE
Confidence            47899999999999999999999998 7888877765 444445554332        1    22222    245666 4


Q ss_pred             EccCChHHH----HHHHHhhcCCCEEEEecccC
Q 020928          215 DCVGFDKTM----STALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       215 d~~g~~~~~----~~~~~~l~~~G~~v~~g~~~  243 (319)
                      .|-.+++..    ...++.|++++.+|.++...
T Consensus       207 ~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~  239 (324)
T COG1052         207 HCPLTPETRHLINAEELAKMKPGAILVNTARGG  239 (324)
T ss_pred             eCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence            444444322    34677899999999887544

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=95.18  E-value=0.42  Score=44.05  Aligned_cols=103  Identities=15%  Similarity=0.174  Sum_probs=62.7

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCE-eeccCCCCcchhHHHHHhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADE-TAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~-v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ...+.+++++||=+|+|+ |-.++++++..+..+|++++.++++.+.++    .+|... +...........    ... 
T Consensus       232 ~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~----~~~-  305 (426)
T TIGR00563       232 TWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS----QWA-  305 (426)
T ss_pred             HHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc----ccc-
Confidence            446788999999888765 555556666665337999999999876654    356542 111111110000    000 


Q ss_pred             hcCCCccEEE-E--ccCC-------------------------hHHHHHHHHhhcCCCEEEEe
Q 020928          205 AMGSGIDVSF-D--CVGF-------------------------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       205 ~~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~G~~v~~  239 (319)
                       ....+|.|| |  |.|.                         ...+..+++.|++||+++..
T Consensus       306 -~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys  367 (426)
T TIGR00563       306 -ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA  367 (426)
T ss_pred             -cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence             134699986 3  3432                         13567788899999998854

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.16  E-value=0.25  Score=42.02  Aligned_cols=82  Identities=20%  Similarity=0.266  Sum_probs=49.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc---CCCE-eeccC-CCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL---GADE-TAKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~---g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      .+.+++|+| +|.+|..++..+...|+ .|+.++++++..+.++++   +... .+..+ .+..+....+..+.+. .+.
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~~~   82 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEK-EGR   82 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH-cCC
Confidence            467899998 69999999998888898 688887776544443332   3221 11111 1122223333333332 246


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|.+.|.
T Consensus        83 id~vi~~ag~   92 (263)
T PRK08226         83 IDILVNNAGV   92 (263)
T ss_pred             CCEEEECCCc
Confidence            8999999884

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.15  E-value=0.77  Score=39.26  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      .+.+|+|+|+|++|..++..+-+.|+.++..+|..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            44689999999999999999999998888888643

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.15  E-value=0.2  Score=38.00  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=28.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      ..+|+|.|+|++|..++..+.+.|+..+..+|.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~   34 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD   34 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence            468999999999999999888889988888864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.14  E-value=0.25  Score=41.49  Aligned_cols=82  Identities=21%  Similarity=0.304  Sum_probs=48.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCC-EeeccCCCC-cchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGAD-ETAKVSTDI-EDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~-~v~~~~~~~-~~~~~~i~~~~~~~~~  208 (319)
                      ++.++||+| +|.+|..++..+...|. .|+.++++.++.+.+.    +.+.. ..+..+-.+ ++....+..+.+. -.
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~   79 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQA-LG   79 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence            467899998 59999999998888898 6777777665544332    22221 122222211 1222233333322 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|.+.|.
T Consensus        80 ~~d~vi~~ag~   90 (250)
T TIGR03206        80 PVDVLVNNAGW   90 (250)
T ss_pred             CCCEEEECCCC
Confidence            68999999973

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.13  E-value=0.34  Score=43.05  Aligned_cols=34  Identities=32%  Similarity=0.525  Sum_probs=29.8

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +.+|+|+|+|++|..++..+.+.|+..+..+|..
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3679999999999999999999999888888765

>PLN02253 xanthoxin dehydrogenase

Probab=95.12  E-value=0.22  Score=42.82  Aligned_cols=82  Identities=18%  Similarity=0.234  Sum_probs=49.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCC---CEeeccC-CCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGA---DETAKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~---~~v~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      .+.++||.| +|.+|.++++.+...|+ .|+.++++++..+ ..++++.   ...+..+ .+.++..+.+..+.+.. ++
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~-g~   94 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKF-GT   94 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHh-CC
Confidence            367899998 69999999987777898 6777777655433 3333321   1111111 12223333334443332 46


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|++.|.
T Consensus        95 id~li~~Ag~  104 (280)
T PLN02253         95 LDIMVNNAGL  104 (280)
T ss_pred             CCEEEECCCc
Confidence            9999998874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.11  E-value=0.36  Score=39.82  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=30.3

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      ...+|+|.|+|++|..+++.+.+.|..++..+|..
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            34689999999999999998889999888888765

>PRK11761 cysM cysteine synthase B; Provisional

Probab=95.10  E-value=1.2  Score=38.94  Aligned_cols=58  Identities=21%  Similarity=0.289  Sum_probs=45.1

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEec--CChhHHHHHHHcCCCEee
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETA  186 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~--~~~~~~~~~~~~g~~~v~  186 (319)
                      .+...+.++++|+...+|+.|+++...|+.+|.+.++++.  .++++.+.++.+|+..+.
T Consensus        55 ~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~  114 (296)
T PRK11761         55 EKRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELIL  114 (296)
T ss_pred             HHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            3445667788876666899999999999999997666664  356788899999987654

>PRK09291 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.08  Score=44.83  Aligned_cols=76  Identities=18%  Similarity=0.250  Sum_probs=46.3

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      +.++||+| +|.+|..+++.+...|+ .|+++.+++.+.+.+++    .+.. .++..+-  .+. ..+.+..   ..++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~-~~~~~~~---~~~i   74 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDL--TDA-IDRAQAA---EWDV   74 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeC--CCH-HHHHHHh---cCCC
Confidence            45799998 59999999999888998 67777776665444332    2221 1111111  111 1222222   3479


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |++|.+.|.
T Consensus        75 d~vi~~ag~   83 (257)
T PRK09291         75 DVLLNNAGI   83 (257)
T ss_pred             CEEEECCCc
Confidence            999999873

>PRK12746 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.51  Score=39.77  Aligned_cols=82  Identities=22%  Similarity=0.301  Sum_probs=46.5

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEE-ecCChhHHH-HHHHc---CCC-EeeccC-CCCcchhHHHHHhhhhc--
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIII-TDVDVQRLS-IARNL---GAD-ETAKVS-TDIEDVDTDVGKIQNAM--  206 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~-v~~~~~~~~-~~~~~---g~~-~v~~~~-~~~~~~~~~i~~~~~~~--  206 (319)
                      +.+++|.| +|.+|..+++.+...|. +|++ ..++.++.+ .++++   +.. ..+..+ .+.+++...++++.+..  
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   84 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQI   84 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhcc
Confidence            57899998 69999999998877898 4544 456555433 22222   211 112111 12223333333333221  


Q ss_pred             ---CCCccEEEEccCC
Q 020928          207 ---GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ---~~~~d~v~d~~g~  219 (319)
                         ..++|++|.+.|.
T Consensus        85 ~~~~~~id~vi~~ag~  100 (254)
T PRK12746         85 RVGTSEIDILVNNAGI  100 (254)
T ss_pred             ccCCCCccEEEECCCC
Confidence               1368999999875

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.09  E-value=0.34  Score=43.10  Aligned_cols=34  Identities=29%  Similarity=0.509  Sum_probs=30.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      ..+|+|+|+|++|..+++.+.+.|...+..+|..
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999889999888888764

>PRK09242 tropinone reductase; Provisional

Probab=95.08  E-value=0.28  Score=41.56  Aligned_cols=82  Identities=23%  Similarity=0.311  Sum_probs=50.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-Hc-----CCCE-eeccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL-----GADE-TAKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~-----g~~~-v~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      .+++++|.| +|.+|..++..+...|+ .|+.+++++++.+.+. ++     +... .+..+ .+.++....+.++.+..
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            467899998 59999999998888898 6777777776544332 22     2111 11111 11223333333333322


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                       +++|+++.+.|.
T Consensus        87 -g~id~li~~ag~   98 (257)
T PRK09242         87 -DGLHILVNNAGG   98 (257)
T ss_pred             -CCCCEEEECCCC
Confidence             479999999985

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=95.08  E-value=0.26  Score=41.72  Aligned_cols=82  Identities=13%  Similarity=0.215  Sum_probs=48.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh--HHHHHHHcCCC-EeeccC-CCCcchhHHHHHhhhhcCCCc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ--RLSIARNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~--~~~~~~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .+.++||.| +|.+|.++++.+...|+ .|+.+++.+.  ..+.+++.+.. ..+..+ .+.++....+.++.+.. +.+
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~~~   86 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEF-GHI   86 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh-CCC
Confidence            367899998 69999999998888898 5666655432  22333334421 111222 12223333444444332 479


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |+++++.|.
T Consensus        87 D~li~~Ag~   95 (253)
T PRK08993         87 DILVNNAGL   95 (253)
T ss_pred             CEEEECCCC
Confidence            999999885

>PLN02476 O-methyltransferase

Probab=95.07  E-value=0.35  Score=41.56  Aligned_cols=105  Identities=16%  Similarity=0.205  Sum_probs=67.3

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .+..+.++||-+|++. |..++.+|+.++- .++++++.+++..+.+++    .|..+-+.+  ...+..+.+.++....
T Consensus       114 ~~~~~ak~VLEIGT~t-GySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~l--i~GdA~e~L~~l~~~~  190 (278)
T PLN02476        114 VQILGAERCIEVGVYT-GYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNV--KHGLAAESLKSMIQNG  190 (278)
T ss_pred             HHhcCCCeEEEecCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE--EEcCHHHHHHHHHhcc
Confidence            5567789999998644 6677778876532 268999999988777654    554432222  1234455555543221


Q ss_pred             -CCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEe
Q 020928          207 -GSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       207 -~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~  239 (319)
                       ...||.||--..-   ...+..+++.|+++|.++.=
T Consensus       191 ~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        191 EGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence             3579998643332   23577888999999987753

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=95.05  E-value=0.16  Score=41.61  Aligned_cols=106  Identities=25%  Similarity=0.310  Sum_probs=68.6

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .+..+.++||-+|++. |..++.+|+.+.- .++++++.++++.+.+++    .|...-+.+  ...+..+.+.++....
T Consensus        41 ~~~~~~k~vLEIGt~~-GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~--~~gda~~~l~~l~~~~  117 (205)
T PF01596_consen   41 VRLTRPKRVLEIGTFT-GYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEV--IEGDALEVLPELANDG  117 (205)
T ss_dssp             HHHHT-SEEEEESTTT-SHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEE--EES-HHHHHHHHHHTT
T ss_pred             HHhcCCceEEEecccc-ccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEE--EEeccHhhHHHHHhcc
Confidence            4456678999999765 8888899987631 289999999988777754    453322221  1235555666665422


Q ss_pred             -CCCccEEE-EccCCh--HHHHHHHHhhcCCCEEEEec
Q 020928          207 -GSGIDVSF-DCVGFD--KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 -~~~~d~v~-d~~g~~--~~~~~~~~~l~~~G~~v~~g  240 (319)
                       .+.||.|| |+.=..  ..+..++++|+++|.++.=.
T Consensus       118 ~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  118 EEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             TTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             CCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEcc
Confidence             24799985 443321  35677889999999887543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.03  E-value=0.54  Score=43.33  Aligned_cols=102  Identities=16%  Similarity=0.246  Sum_probs=62.8

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ..++++|++||=.|+|+ |-.+++++...+ -..|++++.++++.+.+++    +|...+.....   |... +...   
T Consensus       232 ~l~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~---Da~~-l~~~---  303 (431)
T PRK14903        232 LMELEPGLRVLDTCAAP-GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIA---DAER-LTEY---  303 (431)
T ss_pred             HhCCCCCCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC---chhh-hhhh---
Confidence            46788999988888766 556666777652 2379999999999887754    56543221111   1111 1111   


Q ss_pred             cCCCccEEEE---ccCCh-------------------------HHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFD---CVGFD-------------------------KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....||.|+-   |+|..                         ..+..+++.|+++|+++...
T Consensus       304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  366 (431)
T PRK14903        304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST  366 (431)
T ss_pred             hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            1346899863   33221                         13567888999999986543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.03  E-value=0.3  Score=38.89  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=28.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +|+|+|+|++|..+++.+.+.|...+..+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999988889998788887654

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02928 oxidoreductase family protein

Probab=95.02  E-value=0.54  Score=42.00  Aligned_cols=101  Identities=18%  Similarity=0.260  Sum_probs=60.5

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC--CEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA--DETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .|.++.|+|.|.+|..+++.++.+|. +|++.+++..+... ..++.  ..+-.+...... ...+.++.    ...|+|
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~L~ell----~~aDiV  230 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKGG-HEDIYEFA----GEADIV  230 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh-hhhccccccccccccccCc-ccCHHHHH----hhCCEE
Confidence            47899999999999999999999999 78888776332111 11110  000000000000 11222232    257899


Q ss_pred             EEccCChHH-----HHHHHHhhcCCCEEEEecccC
Q 020928          214 FDCVGFDKT-----MSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       214 ~d~~g~~~~-----~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +-+......     -...+..|+++..+|.++...
T Consensus       231 vl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~  265 (347)
T PLN02928        231 VLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGG  265 (347)
T ss_pred             EECCCCChHhhcccCHHHHhcCCCCeEEEECCCcc
Confidence            887764321     245778999999999887543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.02  E-value=0.32  Score=40.96  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=28.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      .+|+|.|+|++|..+++.+.+.|+.++..+|.
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~   56 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF   56 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence            68999999999999999999999988888864

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.00  E-value=0.25  Score=43.18  Aligned_cols=82  Identities=16%  Similarity=0.256  Sum_probs=48.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc----CCCE--eeccCC-CCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL----GADE--TAKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~----g~~~--v~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      .+.+++|.| +|.+|..+++.+...|+ .|+.+.++.++.+.+ +++    +...  .+..+- +.++....+.++.+. 
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~-   92 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA-   92 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh-
Confidence            567899998 59999999987777898 677777776554322 221    1111  111121 122222333333322 


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                      -+++|++|.+.|.
T Consensus        93 ~~~iD~li~nAg~  105 (306)
T PRK06197         93 YPRIDLLINNAGV  105 (306)
T ss_pred             CCCCCEEEECCcc
Confidence            2469999999874

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=94.99  E-value=0.31  Score=41.24  Aligned_cols=81  Identities=23%  Similarity=0.338  Sum_probs=50.1

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCC-EeeccC-CCCcchhHHHHHhhhhcCCCccE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      +.++||.| +|.+|..+++.+...|. +|+.++++.++.+.+.+ ++.. ..+..+ .+..+....+.++.+. ...+|+
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~   83 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVER-FGGIDI   83 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            57899998 59999999998888898 68888887776554433 3321 111111 1222333333333332 246899


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      ++.+.|.
T Consensus        84 li~~ag~   90 (257)
T PRK07067         84 LFNNAAL   90 (257)
T ss_pred             EEECCCc
Confidence            9998874

>PRK05876 short chain dehydrogenase; Provisional

Probab=94.99  E-value=0.28  Score=42.25  Aligned_cols=82  Identities=29%  Similarity=0.361  Sum_probs=49.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---CCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---GADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|..++..+...|+ .|+.+++++++.+.+ +++   +... .+..+ .+..+....+.++.+. .+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g   82 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL-LG   82 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-cC
Confidence            467899998 69999999998888899 577777766554422 222   3221 11111 1122233333333332 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|++|++.|.
T Consensus        83 ~id~li~nAg~   93 (275)
T PRK05876         83 HVDVVFSNAGI   93 (275)
T ss_pred             CCCEEEECCCc
Confidence            68999999884

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=94.99  E-value=0.41  Score=44.24  Aligned_cols=104  Identities=19%  Similarity=0.292  Sum_probs=62.3

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ..+.++|++||=.|+|+ |-.+.++++..+ ...|++++.++++.+.+++    +|...+.....   |... +......
T Consensus       247 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~---D~~~-~~~~~~~  321 (434)
T PRK14901        247 LLDPQPGEVILDACAAP-GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAA---DSRN-LLELKPQ  321 (434)
T ss_pred             HhCCCCcCEEEEeCCCC-chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeC---Chhh-ccccccc
Confidence            45788899998887665 545556666653 2279999999988776654    66554322211   1111 1000000


Q ss_pred             cCCCccEEE-E--ccCC-------------------------hHHHHHHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSF-D--CVGF-------------------------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ....||.|+ |  |.|.                         .+.+..+++.|+++|+++..
T Consensus       322 ~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys  383 (434)
T PRK14901        322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA  383 (434)
T ss_pred             ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            124689986 4  3331                         13477788899999998754

>PRK07856 short chain dehydrogenase; Provisional

Probab=94.97  E-value=0.22  Score=42.08  Aligned_cols=78  Identities=22%  Similarity=0.201  Sum_probs=47.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-EeeccC-CCCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .++++||+| +|.+|..+++.+...|. .|+.+++++++    +..+.. ..+..+ .+.++....+..+.+. .+.+|+
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~   78 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE----TVDGRPAEFHAADVRDPDQVAALVDAIVER-HGRLDV   78 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh----hhcCCceEEEEccCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            468899998 69999999998888898 67777776654    112211 111111 1122333333333332 246899


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      +|.+.|.
T Consensus        79 vi~~ag~   85 (252)
T PRK07856         79 LVNNAGG   85 (252)
T ss_pred             EEECCCC
Confidence            9999874

>PRK06720 hypothetical protein; Provisional

Probab=94.97  E-value=0.47  Score=37.62  Aligned_cols=82  Identities=27%  Similarity=0.329  Sum_probs=48.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-H---HcCCCE-eeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-R---NLGADE-TAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~---~~g~~~-v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      ++..++|.| ++++|......+...|+ .|+.++++++..+.. +   +.+... .+..+-. .+++...+.++.+. -+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~-~G   92 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNA-FS   92 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH-cC
Confidence            467889998 58899999888778898 677777776544322 2   223221 2222211 12223333333332 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|+++++.|.
T Consensus        93 ~iDilVnnAG~  103 (169)
T PRK06720         93 RIDMLFQNAGL  103 (169)
T ss_pred             CCCEEEECCCc
Confidence            68999998874

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=94.95  E-value=0.62  Score=39.21  Aligned_cols=77  Identities=21%  Similarity=0.229  Sum_probs=45.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-EeeccCC-CCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVST-DIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      +++++||+| +|.+|..++..+...|. +|+.++++.     .+..+.. ..+..+- +.+++...+.++.+. ...+|+
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~   79 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF-----LTQEDYPFATFVLDVSDAAAVAQVCQRLLAE-TGPLDV   79 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch-----hhhcCCceEEEEecCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            357899998 59999999998888898 677776654     1222211 1111111 122333333333322 246899


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      +|.+.|.
T Consensus        80 vi~~ag~   86 (252)
T PRK08220         80 LVNAAGI   86 (252)
T ss_pred             EEECCCc
Confidence            9999885

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=94.94  E-value=0.29  Score=40.60  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=29.1

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      +...|+|+|.|++|..++..+-+.|+.++..+|-
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~   62 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM   62 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence            4578999999999999999998899987777753

>PRK06114 short chain dehydrogenase; Provisional

Probab=94.92  E-value=0.31  Score=41.26  Aligned_cols=82  Identities=13%  Similarity=0.238  Sum_probs=48.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh-H-HHHHH---HcCCCE-eeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ-R-LSIAR---NLGADE-TAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~-~-~~~~~---~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      ++.++||+| ++.+|..+++.+...|+ .|+.++++++ . .+..+   ..+... .+..+- +.++....+.++.+. .
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~-~   84 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAE-L   84 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence            467899998 69999999998888998 6666766532 2 22222   233221 122121 222333334443332 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +.+|++|++.|.
T Consensus        85 g~id~li~~ag~   96 (254)
T PRK06114         85 GALTLAVNAAGI   96 (254)
T ss_pred             CCCCEEEECCCC
Confidence            468999999985

>PRK06181 short chain dehydrogenase; Provisional

Probab=94.88  E-value=0.34  Score=41.12  Aligned_cols=80  Identities=21%  Similarity=0.320  Sum_probs=47.5

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-H---HcCCCE-eeccCC-CCcchhHHHHHhhhhcCCCc
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-R---NLGADE-TAKVST-DIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~---~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .++||.| +|.+|..+++.+...|. .|+.+++++++.+.+ +   ..+... .+..+- +.+.....+..+.+. -+++
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~i   79 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVAR-FGGI   79 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH-cCCC
Confidence            5789998 59999999998888898 688888876554322 2   223221 111111 112222233333222 2468


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |++|.+.|.
T Consensus        80 d~vi~~ag~   88 (263)
T PRK06181         80 DILVNNAGI   88 (263)
T ss_pred             CEEEECCCc
Confidence            999999874

>TIGR01138 cysM cysteine synthase B

Probab=94.87  E-value=1.4  Score=38.29  Aligned_cols=58  Identities=19%  Similarity=0.239  Sum_probs=44.3

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC--ChhHHHHHHHcCCCEee
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADETA  186 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~--~~~~~~~~~~~g~~~v~  186 (319)
                      .+...+.++++|+...+|+.|+++...|+.+|.+.++++..  ++.+.+.++.+|+..+.
T Consensus        51 ~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~  110 (290)
T TIGR01138        51 EKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELIL  110 (290)
T ss_pred             HHcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence            34466677777766668999999999999999976666543  46788889999986653

Alternate name: O-acetylserine (thiol)-lyase

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.85  E-value=0.53  Score=36.02  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=27.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +|+|.|+|++|..++..+.+.|..++..+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            48899999999999999999999888888654

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07904 short chain dehydrogenase; Provisional

Probab=94.85  E-value=0.25  Score=41.87  Aligned_cols=83  Identities=19%  Similarity=0.323  Sum_probs=48.5

Q ss_pred             CCCCCeEEEEC-CCHHHHHHHHHHHHc-CCCeEEEecCChhH-HH-HHH---HcCCC--EeeccCC-CCcchhHHHHHhh
Q 020928          134 VGPETNVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQR-LS-IAR---NLGAD--ETAKVST-DIEDVDTDVGKIQ  203 (319)
Q Consensus       134 ~~~~~~vlI~G-~g~vG~~ai~la~~~-g~~~vv~v~~~~~~-~~-~~~---~~g~~--~v~~~~~-~~~~~~~~i~~~~  203 (319)
                      +..+.++||+| +|++|..+++-+... |+ .|+.+++++++ .+ ..+   +.+..  ..+..+- +.++....++++.
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence            55678999998 599999988865555 47 67777776553 22 223   33321  2222222 2223333344444


Q ss_pred             hhcCCCccEEEEccCC
Q 020928          204 NAMGSGIDVSFDCVGF  219 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~  219 (319)
                      +  .+++|+++.+.|.
T Consensus        84 ~--~g~id~li~~ag~   97 (253)
T PRK07904         84 A--GGDVDVAIVAFGL   97 (253)
T ss_pred             h--cCCCCEEEEeeec
Confidence            3  2579999887765

>PRK06914 short chain dehydrogenase; Provisional

Probab=94.84  E-value=0.31  Score=41.90  Aligned_cols=80  Identities=18%  Similarity=0.234  Sum_probs=48.0

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCC---CEeeccCC-CCcchhHHHHHhhhhcC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGA---DETAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~---~~v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      +.++||+| +|.+|..++..+...|+ .|+++++++++.+.+.+    .+.   ...+..+- +.+++.. +.++.+. -
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~-~   79 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKE-I   79 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHh-c
Confidence            56789998 59999999998888898 67777777665443322    221   11121121 2222223 3333332 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++.+.|.
T Consensus        80 ~~id~vv~~ag~   91 (280)
T PRK06914         80 GRIDLLVNNAGY   91 (280)
T ss_pred             CCeeEEEECCcc
Confidence            478999999874

>PRK06482 short chain dehydrogenase; Provisional

Probab=94.84  E-value=0.33  Score=41.63  Aligned_cols=80  Identities=23%  Similarity=0.180  Sum_probs=48.8

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCC-EeeccCC-CCcchhHHHHHhhhhcCCCccEE
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD-ETAKVST-DIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .++||+| +|.+|..+++.+...|. .|+++.+++++.+.+++ .+.. ..+..+- +.++....+.++.+. ..++|++
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~v   80 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAA-LGRIDVV   80 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHH-cCCCCEE
Confidence            5789998 69999999988778898 67888888776665544 2221 1111111 112222333333322 2468999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |.+.|.
T Consensus        81 i~~ag~   86 (276)
T PRK06482         81 VSNAGY   86 (276)
T ss_pred             EECCCC
Confidence            999874

>PRK08328 hypothetical protein; Provisional

Probab=94.83  E-value=0.53  Score=39.40  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=29.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      +.+|+|+|+|++|..++..+.+.|+.++..+|.
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~   59 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE   59 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            468999999999999999999999988888864

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.83  E-value=0.22  Score=42.87  Aligned_cols=83  Identities=16%  Similarity=0.222  Sum_probs=56.3

Q ss_pred             HHhcCC-CCCCeEEEECCCH-HHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          129 CRRANV-GPETNVMIMGSGP-IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       129 l~~~~~-~~~~~vlI~G~g~-vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      ++..++ -.|.+++|+|.|. +|..+..++...|+ .|.+..+...                         .+.+..   
T Consensus       149 l~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~-------------------------~l~~~~---  199 (286)
T PRK14175        149 LKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSK-------------------------DMASYL---  199 (286)
T ss_pred             HHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCch-------------------------hHHHHH---
Confidence            344433 3689999999755 99999999999998 4555533210                         111111   


Q ss_pred             CCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          207 GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       207 ~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                       ..+|+||.++|.+..+..  +.++++..++.+|...
T Consensus       200 -~~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~  233 (286)
T PRK14175        200 -KDADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP  233 (286)
T ss_pred             -hhCCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence             358999999998755443  4688888888888643

>PRK08251 short chain dehydrogenase; Provisional

Probab=94.82  E-value=0.37  Score=40.52  Aligned_cols=81  Identities=20%  Similarity=0.270  Sum_probs=48.3

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c-----CCC-EeeccCC-CCcchhHHHHHhhhhcC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L-----GAD-ETAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~-----g~~-~v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      +.+++|+| +|.+|...++.+...|. .|+.+++++++.+.+.+ +     +.. ..+..+- +.++....+.++.+. -
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~   79 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDE-L   79 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence            46899998 69999988887777787 67777777766544322 1     111 1111121 222333334444332 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|.+.|.
T Consensus        80 ~~id~vi~~ag~   91 (248)
T PRK08251         80 GGLDRVIVNAGI   91 (248)
T ss_pred             CCCCEEEECCCc
Confidence            469999998873

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.80  E-value=0.1  Score=45.17  Aligned_cols=44  Identities=27%  Similarity=0.363  Sum_probs=37.6

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  178 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~  178 (319)
                      ..+.+++|+|+|++|.+++..+...|++++.++++++++.+.+.
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            35678999999999999999999999988999999887766543

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=94.80  E-value=0.87  Score=39.75  Aligned_cols=43  Identities=14%  Similarity=0.158  Sum_probs=34.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  182 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~  182 (319)
                      +|.|+|.|.+|.....-+...|. .|++.++++++.+.+.+.+.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~   44 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRT   44 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence            57889999999988877777887 67888999988887776553

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.79  E-value=0.3  Score=41.59  Aligned_cols=82  Identities=22%  Similarity=0.336  Sum_probs=47.1

Q ss_pred             CCCeEEEECC---CHHHHHHHHHHHHcCCCeEEEecCC---hhHHH-HHHHcCCCEeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVD---VQRLS-IARNLGADETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~---g~vG~~ai~la~~~g~~~vv~v~~~---~~~~~-~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||.|+   +++|.++.+.+...|+ +|+.+.+.   +++.+ +.++++....+..+ .+.++....+..+.+.. 
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-   82 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHW-   82 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHh-
Confidence            4678999983   5899998888777898 56555432   22222 22334432222222 22233444444444333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +.+|+++++.|.
T Consensus        83 g~iD~lvnnAG~   94 (260)
T PRK06997         83 DGLDGLVHSIGF   94 (260)
T ss_pred             CCCcEEEEcccc
Confidence            479999998864

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=94.77  E-value=0.65  Score=38.85  Aligned_cols=34  Identities=24%  Similarity=0.394  Sum_probs=29.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      ..+|+|+|+|++|..++..+-+.|+..+..+|..
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3589999999999999998888999888888653

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.74  E-value=0.94  Score=37.79  Aligned_cols=82  Identities=20%  Similarity=0.294  Sum_probs=44.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh-HH-HHHH---HcCCCE-eeccCCC-CcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ-RL-SIAR---NLGADE-TAKVSTD-IEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~-~~-~~~~---~~g~~~-v~~~~~~-~~~~~~~i~~~~~~~~  207 (319)
                      .+.++||.| +|.+|..++..+...|++ |+++.++.. +. +...   ..+... .+..+-. .++....+.++.+. -
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~   81 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGAN-VVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAE-F   81 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence            346899998 699999999988888984 544444332 22 2222   222221 1111211 12222233333322 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      .++|.+|.+.|.
T Consensus        82 ~~id~vi~~ag~   93 (248)
T PRK05557         82 GGVDILVNNAGI   93 (248)
T ss_pred             CCCCEEEECCCc
Confidence            468999998874

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.74  E-value=0.37  Score=40.79  Aligned_cols=82  Identities=13%  Similarity=0.214  Sum_probs=49.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCC-EeeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGAD-ETAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.++||.| ++.+|..++..+...|+ .++.+++++++.+.+.    +.+.. ..+..+- +.++....+..+.+. -+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~-~~   87 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSK-LG   87 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH-cC
Confidence            368999998 69999999998888898 5777777666544332    22321 1122221 222233333333332 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|+++.+.|.
T Consensus        88 ~~d~li~~ag~   98 (255)
T PRK06113         88 KVDILVNNAGG   98 (255)
T ss_pred             CCCEEEECCCC
Confidence            68999998874

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.74  E-value=0.21  Score=34.71  Aligned_cols=86  Identities=22%  Similarity=0.352  Sum_probs=52.8

Q ss_pred             EECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeecc-CCCCcchhHHHHHhhhhcCCCccEEEEccCC-
Q 020928          142 IMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV-STDIEDVDTDVGKIQNAMGSGIDVSFDCVGF-  219 (319)
Q Consensus       142 I~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~-  219 (319)
                      -+|+|. |..+..+++. +...+++++.+++..+.+++.....-..+ ..+..+       + .-.++.+|.|+....- 
T Consensus         2 diG~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~-------l-~~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen    2 DIGCGT-GRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAED-------L-PFPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             EET-TT-SHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTS-------S-SS-TT-EEEEEEESHGG
T ss_pred             EecCcC-CHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHh-------C-cccccccccccccccee
Confidence            357664 8888889888 44489999999998888887543221111 011111       1 0124568888754332 


Q ss_pred             -----hHHHHHHHHhhcCCCEEE
Q 020928          220 -----DKTMSTALNATRPGGKVC  237 (319)
Q Consensus       220 -----~~~~~~~~~~l~~~G~~v  237 (319)
                           ...+.++.+.|+++|+++
T Consensus        72 ~~~~~~~~l~e~~rvLk~gG~l~   94 (95)
T PF08241_consen   72 HLEDPEAALREIYRVLKPGGRLV   94 (95)
T ss_dssp             GSSHHHHHHHHHHHHEEEEEEEE
T ss_pred             eccCHHHHHHHHHHHcCcCeEEe
Confidence                 135788999999999886

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.73  E-value=0.18  Score=49.18  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=29.8

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      .+.+|+|+|+|+.|++++..++..|+ .|++++..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            57899999999999999999999998 57777654

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=94.72  E-value=0.4  Score=36.00  Aligned_cols=92  Identities=15%  Similarity=0.253  Sum_probs=55.3

Q ss_pred             EEEEC-CCHHHHHHHHHHHHcC--CCeEEEecCChh---HHHHHHHcCCCEeeccCCCCcchhHHHH-------------
Q 020928          140 VMIMG-SGPIGLVTLLAARAFG--APRIIITDVDVQ---RLSIARNLGADETAKVSTDIEDVDTDVG-------------  200 (319)
Q Consensus       140 vlI~G-~g~vG~~ai~la~~~g--~~~vv~v~~~~~---~~~~~~~~g~~~v~~~~~~~~~~~~~i~-------------  200 (319)
                      |.|.| +|++|..++++.+...  + .|++.....+   -.+.++++....+...+.   +....++             
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~---~~~~~l~~~~~~~~~~~~v~   76 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIADE---EAYEELKKALPSKGPGIEVL   76 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESSH---HHHHHHHHHHHHTTSSSEEE
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH---HHHHHHHHHhhhcCCCCEEE
Confidence            56789 5999999999999887  5 5665544333   234556677777665332   1111121             


Q ss_pred             -------HhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          201 -------KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       201 -------~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                             ++..  ..++|+++.++.+-.-+.-.+..++.+-++-
T Consensus        77 ~G~~~l~~~~~--~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~ia  118 (129)
T PF02670_consen   77 SGPEGLEELAE--EPEVDIVVNAIVGFAGLKPTLAAIKAGKDIA  118 (129)
T ss_dssp             ESHHHHHHHHT--HTT-SEEEE--SSGGGHHHHHHHHHTTSEEE
T ss_pred             eChHHHHHHhc--CCCCCEEEEeCcccchHHHHHHHHHCCCeEE
Confidence                   2221  2568999888888767777777887665554

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=94.71  E-value=0.71  Score=33.90  Aligned_cols=85  Identities=22%  Similarity=0.251  Sum_probs=55.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHc--CCCeEEEecCChhHHHH-HHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          139 NVMIMGSGPIGLVTLLAARAF--GAPRIIITDVDVQRLSI-ARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~--g~~~vv~v~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      ++.|+|+|.+|..-..-++..  +...+.+.+.++++.+. .++++.. .  |.    +    +.++.+  ..++|+|+-
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~--~~----~----~~~ll~--~~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-V--YT----D----LEELLA--DEDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-E--ES----S----HHHHHH--HTTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-c--hh----H----HHHHHH--hhcCCEEEE
Confidence            578999999998877655544  45334456777766665 4557765 2  21    2    223332  237999999


Q ss_pred             ccCChHHHHHHHHhhcCCCEE
Q 020928          216 CVGFDKTMSTALNATRPGGKV  236 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~  236 (319)
                      ++........+..++..+-.+
T Consensus        69 ~tp~~~h~~~~~~~l~~g~~v   89 (120)
T PF01408_consen   69 ATPPSSHAEIAKKALEAGKHV   89 (120)
T ss_dssp             ESSGGGHHHHHHHHHHTTSEE
T ss_pred             ecCCcchHHHHHHHHHcCCEE
Confidence            999887777777777776643

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK08263 short chain dehydrogenase; Provisional

Probab=94.71  E-value=0.39  Score=41.19  Aligned_cols=81  Identities=22%  Similarity=0.210  Sum_probs=49.4

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCC-EeeccCC-CCcchhHHHHHhhhhcCCCccE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD-ETAKVST-DIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      +.++||+| +|.+|..+++.+...|. .|+.+++++++.+.+.+ ++.. ..+..+- +.++....+.++.+. -.++|.
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~~d~   80 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEH-FGRLDI   80 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            46799998 69999999888877898 68888887776554443 2211 1111111 122222333333322 247899


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      +|.+.|.
T Consensus        81 vi~~ag~   87 (275)
T PRK08263         81 VVNNAGY   87 (275)
T ss_pred             EEECCCC
Confidence            9999885

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.70  E-value=0.29  Score=40.92  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=29.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      ..+|+|.|+|++|..++..+.+.|...+..+|.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~   53 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD   53 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            468999999999999999999999988888753

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.68  E-value=1.1  Score=37.63  Aligned_cols=104  Identities=14%  Similarity=0.192  Sum_probs=57.9

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH-HH---HHHHcCCCE-eeccCC-CCcchhHHHHHhhhhcCCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LS---IARNLGADE-TAKVST-DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~-~~---~~~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~  209 (319)
                      +.++||.| +|.+|..++.-+...|++.++...++.+. .+   .+++.+... .+..+- +..+....+.++.+.. ..
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~   84 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRY-GV   84 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHc-CC
Confidence            57899998 59999998887778898533333333222 22   223333221 111111 1222223333333322 47


Q ss_pred             ccEEEEccCCh----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          210 IDVSFDCVGFD----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       210 ~d~v~d~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +|.+|.+.|..          +               ..+.+.+.++..|+++.++.
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIAS  141 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcc
Confidence            89999999841          0               13344556677789998875

>PRK12743 oxidoreductase; Provisional

Probab=94.67  E-value=0.36  Score=40.92  Aligned_cols=81  Identities=21%  Similarity=0.264  Sum_probs=46.4

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHH----HHHcCCC-EeeccC-CCCcchhHHHHHhhhhcCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSI----ARNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~----~~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      ++++||+| +|.+|..+++.+...|+ .|+.+ .++.++.+.    +++.+.. ..+..+ .+.++....+.++.+.. +
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~   79 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL-G   79 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            46899998 59999999998888999 45554 344443322    2233432 122122 12222333333343322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|++|.+.|.
T Consensus        80 ~id~li~~ag~   90 (256)
T PRK12743         80 RIDVLVNNAGA   90 (256)
T ss_pred             CCCEEEECCCC
Confidence            68999998874

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.66  E-value=0.4  Score=42.25  Aligned_cols=102  Identities=22%  Similarity=0.249  Sum_probs=59.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHcC----CCeEEEecC--ChhHHHHHHHcCCCEe------------eccCCCCcchh--HH
Q 020928          139 NVMIMGSGPIGLVTLLAARAFG----APRIIITDV--DVQRLSIARNLGADET------------AKVSTDIEDVD--TD  198 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g----~~~vv~v~~--~~~~~~~~~~~g~~~v------------~~~~~~~~~~~--~~  198 (319)
                      +|.|.|.|.+|..+++.+...+    + .++.+..  +.+....+-+++..+-            +.++...-.+.  ..
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~-~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGI-EVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCe-EEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            4789999999999999877653    5 4555533  2333444444332110            00000000000  01


Q ss_pred             HHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc
Q 020928          199 VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       199 i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      ..++.+ ...++|+||+|.|.......+..++..|++.+.++.+
T Consensus        80 p~~~~w-~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP  122 (325)
T TIGR01532        80 PEALPW-RALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP  122 (325)
T ss_pred             hhhccc-cccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence            111111 2358999999999876677788899999888888754

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=94.66  E-value=0.33  Score=40.78  Aligned_cols=82  Identities=18%  Similarity=0.265  Sum_probs=46.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEE-ecCCh-hHHHHHH---HcCCCEe-eccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIII-TDVDV-QRLSIAR---NLGADET-AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~-v~~~~-~~~~~~~---~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      ++.+++|+| +|.+|..+++.+...|++ ++. ..+.+ ...+.++   +.+.... +..+ .+.++....+.++.+.. 
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   79 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFK-VVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEV-   79 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh-
Confidence            357889998 699999999988888984 544 33333 2223333   2343322 1111 12223333333333322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus        80 ~~id~li~~ag~   91 (246)
T PRK12938         80 GEIDVLVNNAGI   91 (246)
T ss_pred             CCCCEEEECCCC
Confidence            479999999985

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.65  E-value=0.34  Score=40.73  Aligned_cols=83  Identities=17%  Similarity=0.204  Sum_probs=47.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-H---HHHcCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-I---ARNLGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~---~~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      ++.++||.| +|.+|..++..+...|.+.++...++.++.+ .   +++.+... .+..+- +.++....+.++.+.. +
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   81 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF-G   81 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-C
Confidence            357899998 5999999999888889843433455554432 2   22233322 121221 2223333333343322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|.+.|.
T Consensus        82 ~id~vi~~ag~   92 (250)
T PRK08063         82 RLDVFVNNAAS   92 (250)
T ss_pred             CCCEEEECCCC
Confidence            68999998874

>PRK06101 short chain dehydrogenase; Provisional

Probab=94.64  E-value=0.34  Score=40.66  Aligned_cols=41  Identities=24%  Similarity=0.246  Sum_probs=32.2

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  179 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~  179 (319)
                      .+++|.| +|++|..++..+...|+ .|+.+++++++.+.+.+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~   43 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHT   43 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            4688998 69999988887777898 68888888877665554

>PRK06125 short chain dehydrogenase; Provisional

Probab=94.63  E-value=0.39  Score=40.72  Aligned_cols=79  Identities=22%  Similarity=0.278  Sum_probs=48.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c----CCC-EeeccCCCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L----GAD-ETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~----g~~-~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.+++|.| ++++|..+++.+...|+ .|+.+++++++.+.+.+ +    +.. ..+..+-.  + .+.+.++.+.. +
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~--~-~~~~~~~~~~~-g   80 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLS--S-PEAREQLAAEA-G   80 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCC--C-HHHHHHHHHHh-C
Confidence            368999998 59999999998888899 78888887765543222 2    221 12221211  1 12333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|.+|.+.|.
T Consensus        81 ~id~lv~~ag~   91 (259)
T PRK06125         81 DIDILVNNAGA   91 (259)
T ss_pred             CCCEEEECCCC
Confidence            69999999875

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.63  E-value=0.21  Score=43.18  Aligned_cols=82  Identities=15%  Similarity=0.194  Sum_probs=55.7

Q ss_pred             HHhcC-CCCCCeEEEECCCH-HHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          129 CRRAN-VGPETNVMIMGSGP-IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       129 l~~~~-~~~~~~vlI~G~g~-vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      ++..+ --.|.+++|+|.|. +|..+.+++...|+ .|.+..+...  +                       +.+..   
T Consensus       150 L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~--~-----------------------L~~~~---  200 (283)
T PRK14192        150 LKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQ--N-----------------------LPELV---  200 (283)
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCch--h-----------------------HHHHh---
Confidence            34433 35788999999876 99999999999998 6666543110  0                       11111   


Q ss_pred             CCCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc
Q 020928          207 GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       207 ~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                       ..+|++++++|.+..+  -.+.++++..++.++..
T Consensus       201 -~~aDIvI~AtG~~~~v--~~~~lk~gavViDvg~n  233 (283)
T PRK14192        201 -KQADIIVGAVGKPELI--KKDWIKQGAVVVDAGFH  233 (283)
T ss_pred             -ccCCEEEEccCCCCcC--CHHHcCCCCEEEEEEEe
Confidence             3689999999876432  23568888888888754

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.61  E-value=0.66  Score=36.47  Aligned_cols=89  Identities=18%  Similarity=0.262  Sum_probs=56.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|.++|.|.+|...+.-+...|+ .|.+.++++++.+.+.+.|+..+-       +    ..++.    ...|+||-++.
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~~-------s----~~e~~----~~~dvvi~~v~   66 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVAD-------S----PAEAA----EQADVVILCVP   66 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEES-------S----HHHHH----HHBSEEEE-SS
T ss_pred             EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhhh-------h----hhhHh----hcccceEeecc
Confidence            68889999999998888888898 788899999998888877743321       1    11122    13589998888


Q ss_pred             ChHHHHHH------HHhhcCCCEEEEecccC
Q 020928          219 FDKTMSTA------LNATRPGGKVCLIGLAK  243 (319)
Q Consensus       219 ~~~~~~~~------~~~l~~~G~~v~~g~~~  243 (319)
                      ........      ...+.++..++.++...
T Consensus        67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~   97 (163)
T PF03446_consen   67 DDDAVEAVLFGENILAGLRPGKIIIDMSTIS   97 (163)
T ss_dssp             SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--
T ss_pred             cchhhhhhhhhhHHhhccccceEEEecCCcc
Confidence            75444443      34456666777766543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.60  E-value=0.19  Score=43.40  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  178 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~  178 (319)
                      ..+++++|+|+|+.+.+++.-+...|++++.+++++.++.+.+.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            34678999999999999999888899988999999888766554

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.60  E-value=0.47  Score=42.54  Aligned_cols=34  Identities=32%  Similarity=0.515  Sum_probs=30.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      ..+|+|+|+|++|..++..+.+.|+.++..+|..
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999999999888888754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.58  E-value=0.73  Score=37.64  Aligned_cols=34  Identities=26%  Similarity=0.450  Sum_probs=29.9

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      ..+|+|.|+|++|..+++.+.+.|...++.+|.+
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4689999999999999998888999778888776

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07074 short chain dehydrogenase; Provisional

Probab=94.57  E-value=0.43  Score=40.34  Aligned_cols=81  Identities=19%  Similarity=0.261  Sum_probs=48.3

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCC--EeeccCCCC-cchhHHHHHhhhhcCCCcc
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD--ETAKVSTDI-EDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~--~v~~~~~~~-~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++++||+| +|.+|...+..+...|. .|+.++++.++.+.+ +++...  ..+..+-.+ ++....+.++.+.. +++|
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~d   79 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAER-GPVD   79 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            46899998 59999999887777898 677787777665433 333211  112222211 12222333333222 4689


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      .++.+.|.
T Consensus        80 ~vi~~ag~   87 (257)
T PRK07074         80 VLVANAGA   87 (257)
T ss_pred             EEEECCCC
Confidence            99999974

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=94.55  E-value=0.39  Score=40.78  Aligned_cols=81  Identities=17%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEec-CChhHHHH-HHH----cCCC-EeeccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLSI-ARN----LGAD-ETAKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~-~~~~~~~~-~~~----~g~~-~v~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      +++++||.| ++++|.+++..+...|++ |+.+. +++++.+. .++    .+.. ..+..+ .+.++....+.++.+. 
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-   84 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED-   84 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh-
Confidence            467999998 599999999988889994 55543 34443322 222    2321 122222 1222333333333332 


Q ss_pred             CCCccEEEEccC
Q 020928          207 GSGIDVSFDCVG  218 (319)
Q Consensus       207 ~~~~d~v~d~~g  218 (319)
                      -+.+|+++++.|
T Consensus        85 ~g~id~lv~nAg   96 (260)
T PRK08416         85 FDRVDFFISNAI   96 (260)
T ss_pred             cCCccEEEECcc
Confidence            246899999885

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.54  E-value=0.3  Score=38.64  Aligned_cols=78  Identities=14%  Similarity=0.201  Sum_probs=52.0

Q ss_pred             CCCCCeEEEECCCH-HHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          134 VGPETNVMIMGSGP-IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       134 ~~~~~~vlI~G~g~-vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      --.+.+++|+|+|. +|..++..++..|+ .|.++.++.+                     +    +.+..    ..+|+
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~---------------------~----l~~~l----~~aDi   90 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTK---------------------N----LKEHT----KQADI   90 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCch---------------------h----HHHHH----hhCCE
Confidence            45789999999986 59989999988998 5666655421                     1    11111    35899


Q ss_pred             EEEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          213 SFDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       213 v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      ||.+++.+..  ...+.++++-.++.++.+.
T Consensus        91 VIsat~~~~i--i~~~~~~~~~viIDla~pr  119 (168)
T cd01080          91 VIVAVGKPGL--VKGDMVKPGAVVIDVGINR  119 (168)
T ss_pred             EEEcCCCCce--ecHHHccCCeEEEEccCCC
Confidence            9999998642  2223566666667776543

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06523 short chain dehydrogenase; Provisional

Probab=94.53  E-value=0.28  Score=41.58  Aligned_cols=76  Identities=18%  Similarity=0.228  Sum_probs=45.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC-CEeeccCCC-CcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA-DETAKVSTD-IEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~-~~v~~~~~~-~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      ++.++||.| +|.+|..+++.+...|+ .|+.++++++..     .+. ...+..+-. .++....+.++.+. .+++|+
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~   80 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDD-----LPEGVEFVAADLTTAEGCAAVARAVLER-LGGVDI   80 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhh-----cCCceeEEecCCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            468899998 59999999998888898 677777765431     111 111111111 12222233333332 346999


Q ss_pred             EEEccC
Q 020928          213 SFDCVG  218 (319)
Q Consensus       213 v~d~~g  218 (319)
                      +|++.|
T Consensus        81 vi~~ag   86 (260)
T PRK06523         81 LVHVLG   86 (260)
T ss_pred             EEECCc
Confidence            999987

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=94.51  E-value=0.93  Score=40.19  Aligned_cols=88  Identities=19%  Similarity=0.163  Sum_probs=59.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|..+.+.++..|. .|++.+++++.....    .    .+.   .+    +.++.    ...|+|+-
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~~~~~----~----~~~---~~----l~ell----~~aDiVil  204 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNKDLDF----L----TYK---DS----VKEAI----KDADIISL  204 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhHhhhh----h----hcc---CC----HHHHH----hcCCEEEE
Confidence            45689999999999999999999998 788888776542210    0    010   01    22222    35789888


Q ss_pred             ccCChH-----HHHHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFDK-----TMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      ++....     .....+..|+++..++.++...
T Consensus       205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~  237 (330)
T PRK12480        205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGA  237 (330)
T ss_pred             eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence            887642     2235667888999888887543

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=94.48  E-value=0.11  Score=38.89  Aligned_cols=79  Identities=18%  Similarity=0.186  Sum_probs=47.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      -+|-|+|+|.+|......++..|. .|..+ .++.++.+.+.. ++...+.++           .++    -...|++|=
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~-----------~~~----~~~aDlv~i   74 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDL-----------EEI----LRDADLVFI   74 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----T-----------TGG----GCC-SEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCccccccccccccccccccc-----------ccc----cccCCEEEE
Confidence            478899999999999999999998 56665 455555555544 333222211           111    246899999


Q ss_pred             ccCChHHHHHHHHhhcCC
Q 020928          216 CVGFDKTMSTALNATRPG  233 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~  233 (319)
                      ++..+ .+...++.|...
T Consensus        75 avpDd-aI~~va~~La~~   91 (127)
T PF10727_consen   75 AVPDD-AIAEVAEQLAQY   91 (127)
T ss_dssp             -S-CC-HHHHHHHHHHCC
T ss_pred             EechH-HHHHHHHHHHHh
Confidence            99976 667777766544

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK08264 short chain dehydrogenase; Validated

Probab=94.47  E-value=0.32  Score=40.57  Aligned_cols=77  Identities=19%  Similarity=0.274  Sum_probs=47.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-EeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .+.+++|+| +|.+|..+++.+...|.++|+.++++.++.+.   .+.. ..+..+-.  + .+.+.++.+.. ..+|++
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~--~-~~~~~~~~~~~-~~id~v   77 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVT--D-PASVAAAAEAA-SDVTIL   77 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCC--C-HHHHHHHHHhc-CCCCEE
Confidence            457899997 69999999998888898567777776655432   2211 11111111  1 12233333322 358999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |.+.|.
T Consensus        78 i~~ag~   83 (238)
T PRK08264         78 VNNAGI   83 (238)
T ss_pred             EECCCc
Confidence            999886

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=94.47  E-value=0.54  Score=39.74  Aligned_cols=82  Identities=21%  Similarity=0.336  Sum_probs=50.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCC-EeeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      ++.+++|.| +|.+|..++..+...|+ .|+.+++++++.+.+    ++.+.. ..+..+ .+.++....+.++.... +
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~   87 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH-G   87 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc-C
Confidence            478899998 59999999987777898 688887876553322    223321 122111 22223333444443323 3


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|.+|.+.|.
T Consensus        88 ~id~vi~~ag~   98 (256)
T PRK06124         88 RLDILVNNVGA   98 (256)
T ss_pred             CCCEEEECCCC
Confidence            68999998885

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=94.46  E-value=0.51  Score=39.64  Aligned_cols=85  Identities=15%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             CCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE--ee--ccCC-CCcchhHHHHHh
Q 020928          133 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE--TA--KVST-DIEDVDTDVGKI  202 (319)
Q Consensus       133 ~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~--v~--~~~~-~~~~~~~~i~~~  202 (319)
                      +..++.+++|.| +|.+|...++.+...|+ .|+.++++.++.+.+    ++.+...  .+  +++. ...+..+.+..+
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTI   86 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence            345788999998 69999999988777898 677787776553322    2223221  11  2211 122333333334


Q ss_pred             hhhcCCCccEEEEccCC
Q 020928          203 QNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~  219 (319)
                      .+. ...+|.+|.+.|.
T Consensus        87 ~~~-~~~id~vi~~Ag~  102 (247)
T PRK08945         87 EEQ-FGRLDGVLHNAGL  102 (247)
T ss_pred             HHH-hCCCCEEEECCcc
Confidence            332 2469999988764

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=94.45  E-value=0.51  Score=39.43  Aligned_cols=82  Identities=22%  Similarity=0.293  Sum_probs=48.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCC-EeeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD-ETAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++.++||.| +|.+|..++..+...|. .|+..+++.++.+.+ ..++.. ..+..+- +.++....+.++.+. -.++|
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id   82 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEAD-LEGVD   82 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH-cCCCC
Confidence            467899998 59999999988888898 676666666555433 333321 1121111 122222233333322 24699


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      .+|.+.|.
T Consensus        83 ~vi~~ag~   90 (245)
T PRK12936         83 ILVNNAGI   90 (245)
T ss_pred             EEEECCCC
Confidence            99999884

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=94.42  E-value=0.86  Score=38.58  Aligned_cols=96  Identities=20%  Similarity=0.298  Sum_probs=62.0

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-EeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      ....++.+||-+|+|. |..+..+++ .|. .++++|.+++..+.+++.... ..+.-     |.    ..+. .....+
T Consensus        38 l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~-----d~----~~~~-~~~~~f  104 (251)
T PRK10258         38 LPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAG-----DI----ESLP-LATATF  104 (251)
T ss_pred             cCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEc-----Cc----ccCc-CCCCcE
Confidence            3344678899999876 766666665 465 799999999988888775321 11111     11    1111 123469


Q ss_pred             cEEEEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          211 DVSFDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       211 d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |+|+....-      ...+..+.+.|+++|.++...
T Consensus       105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        105 DLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             EEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            999865431      235778888999999998764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.41  E-value=0.6  Score=44.68  Aligned_cols=93  Identities=12%  Similarity=0.107  Sum_probs=61.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +.++|.|.|.+|+.+++.++..|. .+++++.++++.+.+++.|...+.- +..+++   .+++.   .=..+|.++-++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~G-D~~~~~---~L~~a---~i~~a~~viv~~  489 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLG-NAANEE---IMQLA---HLDCARWLLLTI  489 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEc-CCCCHH---HHHhc---CccccCEEEEEc
Confidence            678999999999999999999998 6999999999999999887554432 222222   22221   234688888777


Q ss_pred             CChHHH---HHHHHhhcCCCEEEE
Q 020928          218 GFDKTM---STALNATRPGGKVCL  238 (319)
Q Consensus       218 g~~~~~---~~~~~~l~~~G~~v~  238 (319)
                      ++++..   -.+.+...+.-+++.
T Consensus       490 ~~~~~~~~iv~~~~~~~~~~~iia  513 (558)
T PRK10669        490 PNGYEAGEIVASAREKRPDIEIIA  513 (558)
T ss_pred             CChHHHHHHHHHHHHHCCCCeEEE
Confidence            664321   123344445555543

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.39  E-value=0.14  Score=44.14  Aligned_cols=115  Identities=20%  Similarity=0.212  Sum_probs=67.1

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      ..+.+++|+|+|++|.+++..+...|+..|.+++++.++.+.+. +++....+.+..   +    ..+    .-.++|+|
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~---~----~~~----~~~~~Div  189 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDL---E----LQE----ELADFDLI  189 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecc---c----chh----ccccCCEE
Confidence            45678999999999999999999999768999999888765543 343211011100   0    000    12468999


Q ss_pred             EEccCChHH-----HHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEE
Q 020928          214 FDCVGFDKT-----MSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVI  261 (319)
Q Consensus       214 ~d~~g~~~~-----~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~  261 (319)
                      ++|+...-.     .......++++..++.+--.+. .+........+++++.
T Consensus       190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~-~T~ll~~A~~~G~~~~  241 (278)
T PRK00258        190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPL-PTPFLAWAKAQGARTI  241 (278)
T ss_pred             EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCC-CCHHHHHHHHCcCeec
Confidence            999875410     0112345666666665543222 2333333444455544

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=94.39  E-value=0.48  Score=39.90  Aligned_cols=79  Identities=19%  Similarity=0.289  Sum_probs=48.8

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCE-eeccC-CCCcchhHHHHHhhhhcCCCccEEE
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      +++|.| +|.+|..++..+...|+ +|+.+++++++.+.+.. ++... .+..+ .+.++....+..+.+. .+++|.++
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~-~~~id~vi   79 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE-WRNIDVLV   79 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH-cCCCCEEE
Confidence            588998 59999999998888898 68888888776655433 34321 11111 1122223333333322 24699999


Q ss_pred             EccCC
Q 020928          215 DCVGF  219 (319)
Q Consensus       215 d~~g~  219 (319)
                      .+.|.
T Consensus        80 ~~ag~   84 (248)
T PRK10538         80 NNAGL   84 (248)
T ss_pred             ECCCc
Confidence            98874

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=94.38  E-value=0.28  Score=45.93  Aligned_cols=101  Identities=21%  Similarity=0.316  Sum_probs=64.7

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc--CCCEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL--GADETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~--g~~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      ...++++.+||-+|+|. |..++.+++..+. .+++++.+++..+.+++.  +....+.+..  .++.    ... ....
T Consensus       261 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~--~d~~----~~~-~~~~  331 (475)
T PLN02336        261 KLDLKPGQKVLDVGCGI-GGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGRKCSVEFEV--ADCT----KKT-YPDN  331 (475)
T ss_pred             hcCCCCCCEEEEEeccC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcCCCceEEEE--cCcc----cCC-CCCC
Confidence            34567888999998876 6677788888887 799999999888777652  2111011100  1110    010 0134


Q ss_pred             CccEEEEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          209 GIDVSFDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       209 ~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+|+|+..-.-      ...+..+.+.|+|+|+++...
T Consensus       332 ~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        332 SFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             CEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            69999863221      246788999999999988664

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.38  E-value=0.61  Score=39.43  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=29.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      ..+|+|+|+|++|..++..+.+.|+.++..+|.
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   64 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF   64 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            468999999999999999999999988888864

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.38  E-value=0.42  Score=39.81  Aligned_cols=74  Identities=20%  Similarity=0.278  Sum_probs=51.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HH-HcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-AR-NLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~-~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +++|.|+|.+|...++.+...|. .|+.++..+++.+. +. ++....+ .-+..+++   .   +.+.+-..+|+++-+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~~v-~gd~t~~~---~---L~~agi~~aD~vva~   73 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTHVV-IGDATDED---V---LEEAGIDDADAVVAA   73 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceEEE-EecCCCHH---H---HHhcCCCcCCEEEEe
Confidence            57889999999999999999998 68888888888666 33 2444333 22232222   2   333345679999999


Q ss_pred             cCCh
Q 020928          217 VGFD  220 (319)
Q Consensus       217 ~g~~  220 (319)
                      +|.+
T Consensus        74 t~~d   77 (225)
T COG0569          74 TGND   77 (225)
T ss_pred             eCCC
Confidence            9975

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=94.37  E-value=0.5  Score=42.49  Aligned_cols=83  Identities=16%  Similarity=0.139  Sum_probs=48.0

Q ss_pred             CCCCeEEEEC-CCHHHHH--HHHHHHHcCCCeEEEecCCh---h-------------HHHHHHHcCCCE-eeccCC-CCc
Q 020928          135 GPETNVMIMG-SGPIGLV--TLLAARAFGAPRIIITDVDV---Q-------------RLSIARNLGADE-TAKVST-DIE  193 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~--ai~la~~~g~~~vv~v~~~~---~-------------~~~~~~~~g~~~-v~~~~~-~~~  193 (319)
                      ..++++||+| ++++|++  +.+.+ ..|+ .+++++...   +             -.+.+++.|... .+..+- +.+
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E  116 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE  116 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence            4567889998 6899999  45555 7898 455554321   1             123445556432 222222 223


Q ss_pred             chhHHHHHhhhhcCCCccEEEEccCCh
Q 020928          194 DVDTDVGKIQNAMGSGIDVSFDCVGFD  220 (319)
Q Consensus       194 ~~~~~i~~~~~~~~~~~d~v~d~~g~~  220 (319)
                      +....+..+.+.. +++|+++++++.+
T Consensus       117 ~v~~lie~I~e~~-G~IDiLVnSaA~~  142 (398)
T PRK13656        117 IKQKVIELIKQDL-GQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHHhc-CCCCEEEECCccC
Confidence            3334444444433 4799999999876

>PRK05884 short chain dehydrogenase; Provisional

Probab=94.37  E-value=0.36  Score=40.07  Aligned_cols=75  Identities=13%  Similarity=0.236  Sum_probs=45.3

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +++|.| +|.+|..+++.+...|. .|+.+++++++.+.+ ++++...+ ..+-.+.   +.+.++.+.....+|+++++
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~-~~D~~~~---~~v~~~~~~~~~~id~lv~~   76 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAI-VCDNTDP---ASLEEARGLFPHHLDTIVNV   76 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEE-ecCCCCH---HHHHHHHHHHhhcCcEEEEC
Confidence            578997 59999999998888898 677777877765543 34443322 1221111   12222222112368999988


Q ss_pred             cC
Q 020928          217 VG  218 (319)
Q Consensus       217 ~g  218 (319)
                      .|
T Consensus        77 ag   78 (223)
T PRK05884         77 PA   78 (223)
T ss_pred             CC
Confidence            65

>PRK06484 short chain dehydrogenase; Validated

Probab=94.35  E-value=0.34  Score=45.86  Aligned_cols=82  Identities=22%  Similarity=0.398  Sum_probs=52.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HHHcCCCE-eeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +++++||+| ++++|.++++.+...|+ .|+.++++.++.+. .++++... .+..+ .+.++....+.++.+.. +++|
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~iD   81 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREF-GRID   81 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHh-CCCC
Confidence            567899998 59999999998888998 67777777776543 34455322 11111 22233334444443322 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus        82 ~li~nag~   89 (520)
T PRK06484         82 VLVNNAGV   89 (520)
T ss_pred             EEEECCCc
Confidence            99999874

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.35  E-value=0.36  Score=46.71  Aligned_cols=93  Identities=16%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      ..+|+|.|.|.+|+...+.++..|. .+++++.++++.+.+++.|..... -+..+.+   .   +.+.+-..+|.++-+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~-GDat~~~---~---L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFY-GDATRMD---L---LESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEE-EeCCCHH---H---HHhcCCCcCCEEEEE
Confidence            3579999999999999999999998 689999999999999988754332 2333222   2   222233578899988


Q ss_pred             cCChHHHH---HHHHhhcCCCEEE
Q 020928          217 VGFDKTMS---TALNATRPGGKVC  237 (319)
Q Consensus       217 ~g~~~~~~---~~~~~l~~~G~~v  237 (319)
                      .++++.-.   ...+.+.|+-+++
T Consensus       472 ~~d~~~n~~i~~~ar~~~p~~~ii  495 (621)
T PRK03562        472 IDDPQTSLQLVELVKEHFPHLQII  495 (621)
T ss_pred             eCCHHHHHHHHHHHHHhCCCCeEE
Confidence            88764322   3344455555544

>PRK12367 short chain dehydrogenase; Provisional

Probab=94.31  E-value=0.35  Score=40.90  Aligned_cols=34  Identities=32%  Similarity=0.342  Sum_probs=28.0

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +++++|+| +|++|..+++.+...|. .|+.+++++
T Consensus        14 ~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~   48 (245)
T PRK12367         14 GKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK   48 (245)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            57899998 59999999998888898 677776665

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=94.30  E-value=0.17  Score=43.93  Aligned_cols=91  Identities=18%  Similarity=0.272  Sum_probs=56.9

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++.+||-+|+|. |..++.+++. |. .|+++|.++...+.+++.    +......    ..|..    ...  ....+|
T Consensus       120 ~~~~vLDlGcG~-G~~~~~la~~-g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~----~~D~~----~~~--~~~~fD  186 (287)
T PRK12335        120 KPGKALDLGCGQ-GRNSLYLALL-GF-DVTAVDINQQSLENLQEIAEKENLNIRTG----LYDIN----SAS--IQEEYD  186 (287)
T ss_pred             CCCCEEEeCCCC-CHHHHHHHHC-CC-EEEEEECCHHHHHHHHHHHHHcCCceEEE----Eechh----ccc--ccCCcc
Confidence            445888898876 7777777774 76 799999999877766542    3211110    00110    010  135699


Q ss_pred             EEEEccC----C----hHHHHHHHHhhcCCCEEEEe
Q 020928          212 VSFDCVG----F----DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       212 ~v~d~~g----~----~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +|+...-    .    +..+..+.+.|+++|.++.+
T Consensus       187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9987532    1    23577788899999996554

>PRK07069 short chain dehydrogenase; Validated

Probab=94.30  E-value=0.78  Score=38.50  Aligned_cols=78  Identities=22%  Similarity=0.343  Sum_probs=45.0

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC-hhHHHHHH-HcC----CCEe--e--ccCCCCcchhHHHHHhhhhcC
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD-VQRLSIAR-NLG----ADET--A--KVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~-~~~~~~~~-~~g----~~~v--~--~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      +++|+| +|.+|..+++.+...|+ +|+.++++ .++.+.+. ++.    ...+  +  |+ .+.+++...+.++.+. -
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~-~   77 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA-KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDV-TDEAQWQALLAQAADA-M   77 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeec-CCHHHHHHHHHHHHHH-c
Confidence            378887 69999999888878898 67777765 44433322 221    1111  1  22 1222333333333332 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++.+.|.
T Consensus        78 ~~id~vi~~ag~   89 (251)
T PRK07069         78 GGLSVLVNNAGV   89 (251)
T ss_pred             CCccEEEECCCc
Confidence            468999999874

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=94.29  E-value=0.55  Score=39.98  Aligned_cols=82  Identities=24%  Similarity=0.351  Sum_probs=48.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.+++|.| ++.+|..++..+...|+ .++.+++++++.+.+    ++.+... .+..+- +.++....+.++.+.. +
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~   86 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEV-G   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC-C
Confidence            467899998 59999988887778898 577777776654332    2233321 122222 1222223333333222 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|.++.+.|.
T Consensus        87 ~id~li~~ag~   97 (265)
T PRK07097         87 VIDILVNNAGI   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            68999999885

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=94.25  E-value=0.45  Score=39.84  Aligned_cols=81  Identities=15%  Similarity=0.158  Sum_probs=45.4

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HH---HHcCCC-EeeccCC-CCcchhHHHHHhhhhcCCCc
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IA---RNLGAD-ETAKVST-DIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~---~~~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .++||+| +|.+|..++..+...|.+.++...+++++.+ ..   ++.+.. ..+..+- +.++....+.++.+ ..+++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~-~~~~i   80 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQ-HDEPL   80 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHH-hCCCC
Confidence            3789998 5999999999888889853333445554432 22   222321 1122221 12223333333332 24579


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |.+|.+.|.
T Consensus        81 d~vi~~ag~   89 (247)
T PRK09730         81 AALVNNAGI   89 (247)
T ss_pred             CEEEECCCC
Confidence            999999985

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=94.25  E-value=0.23  Score=43.08  Aligned_cols=36  Identities=11%  Similarity=0.119  Sum_probs=30.7

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      .+.++||+|+|+.+.+++..+...|++++.++++++
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            567899999999999887777778998899998884

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=94.24  E-value=0.14  Score=42.50  Aligned_cols=101  Identities=19%  Similarity=0.258  Sum_probs=64.3

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeeccCCC------------CcchhHH
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVSTD------------IEDVDTD  198 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~~~------------~~~~~~~  198 (319)
                      ...+++.+|||-|+|. |.-+..||. .|. .|++++-++...+.+ ++.+..........            ..|+-  
T Consensus        33 l~~~~~~rvLvPgCG~-g~D~~~La~-~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF--  107 (218)
T PF05724_consen   33 LALKPGGRVLVPGCGK-GYDMLWLAE-QGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFF--  107 (218)
T ss_dssp             HTTSTSEEEEETTTTT-SCHHHHHHH-TTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TT--
T ss_pred             cCCCCCCeEEEeCCCC-hHHHHHHHH-CCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccc--
Confidence            5678888999988876 677777886 498 899999999888776 34443221110000            01221  


Q ss_pred             HHHhhhhcCCCccEEEEccCC--------hHHHHHHHHhhcCCCEEEEe
Q 020928          199 VGKIQNAMGSGIDVSFDCVGF--------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       199 i~~~~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~  239 (319)
                        ++.....+.||.|+|...=        +...+.+.++|+++|++.++
T Consensus       108 --~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen  108 --ELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             --TGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             --cCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence              1222122469999997543        24678888999999994443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=94.24  E-value=0.72  Score=35.82  Aligned_cols=95  Identities=17%  Similarity=0.212  Sum_probs=62.5

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhh-----cCCCcc
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA-----MGSGID  211 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~-----~~~~~d  211 (319)
                      .+|+|.| -|++|.++++.-|..+. -|..++-+++..     ..+..+++.   +..|.++-+++.+.     .+.++|
T Consensus         4 grVivYGGkGALGSacv~~Fkanny-wV~siDl~eNe~-----Ad~sI~V~~---~~swtEQe~~v~~~vg~sL~gekvD   74 (236)
T KOG4022|consen    4 GRVIVYGGKGALGSACVEFFKANNY-WVLSIDLSENEQ-----ADSSILVDG---NKSWTEQEQSVLEQVGSSLQGEKVD   74 (236)
T ss_pred             ceEEEEcCcchHhHHHHHHHHhcCe-EEEEEeeccccc-----ccceEEecC---CcchhHHHHHHHHHHHHhhcccccc
Confidence            5788997 59999999999999998 677777654431     123333332   23454444433321     367899


Q ss_pred             EEEEccCChH--------------------------HHHHHHHhhcCCCEEEEecc
Q 020928          212 VSFDCVGFDK--------------------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .||.-.|+-.                          ....+..+|+++|-+.+.|.
T Consensus        75 av~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGA  130 (236)
T KOG4022|consen   75 AVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGA  130 (236)
T ss_pred             eEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeeccc
Confidence            9998777631                          12344568999999988875

>PRK06436 glycerate dehydrogenase; Provisional

Probab=94.23  E-value=0.61  Score=40.75  Aligned_cols=87  Identities=22%  Similarity=0.207  Sum_probs=58.7

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|++|.|+|.|.+|....++++.+|. +|++.+++...      .+....  +    .    .+.++.    ...|+|+-
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~~~------~~~~~~--~----~----~l~ell----~~aDiv~~  179 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSYVN------DGISSI--Y----M----EPEDIM----KKSDFVLI  179 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcc------cCcccc--c----C----CHHHHH----hhCCEEEE
Confidence            57899999999999999999999999 78888765321      121110  0    1    122222    24788888


Q ss_pred             ccCChHH-----HHHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFDKT-----MSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~~~-----~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +....+.     -...++.|+++..++.++...
T Consensus       180 ~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~  212 (303)
T PRK06436        180 SLPLTDETRGMINSKMLSLFRKGLAIINVARAD  212 (303)
T ss_pred             CCCCCchhhcCcCHHHHhcCCCCeEEEECCCcc
Confidence            7775322     235677899999888887544

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.23  E-value=0.57  Score=39.11  Aligned_cols=82  Identities=21%  Similarity=0.313  Sum_probs=48.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HH---cCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RN---LGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~---~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.+++|.| +|.+|..++..+...|. .|+.+++++++.+.+ .+   .+... .+..+- +..+....++.+.+ ..+
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~   83 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKN-ELG   83 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHH-HcC
Confidence            357899998 69999999988778898 677787776654322 22   22211 122221 12222233333322 224


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|.+|.+.|.
T Consensus        84 ~id~vi~~ag~   94 (239)
T PRK07666         84 SIDILINNAGI   94 (239)
T ss_pred             CccEEEEcCcc
Confidence            78999998874

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=94.22  E-value=0.96  Score=37.22  Aligned_cols=97  Identities=20%  Similarity=0.302  Sum_probs=55.8

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhh-cCCCcc
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA-MGSGID  211 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~-~~~~~d  211 (319)
                      ++++++||=+|+|+ |..+..+++..+. ..|++++.++..    ...+. .++.  .+-.+. ..+.++.+. ....+|
T Consensus        49 ~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v-~~i~--~D~~~~-~~~~~i~~~~~~~~~D  119 (209)
T PRK11188         49 FKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPMD----PIVGV-DFLQ--GDFRDE-LVLKALLERVGDSKVQ  119 (209)
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEeccccc----CCCCc-EEEe--cCCCCh-HHHHHHHHHhCCCCCC
Confidence            68888888888766 6666667776653 379999887621    00121 1121  111111 112222221 245799


Q ss_pred             EEEEcc-----CC------------hHHHHHHHHhhcCCCEEEEe
Q 020928          212 VSFDCV-----GF------------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       212 ~v~d~~-----g~------------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +|+...     |.            ...++.+.+.|+++|+++..
T Consensus       120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            998644     21            12467788899999999874

>PRK07775 short chain dehydrogenase; Provisional

Probab=94.20  E-value=0.57  Score=40.19  Aligned_cols=81  Identities=21%  Similarity=0.255  Sum_probs=46.4

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eeccCC-CCcchhHHHHHhhhhcCCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKVST-DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~  209 (319)
                      ..+++|+| +|.+|..+++.+...|+ +|+++.++.++.+.+    +..+... .+..+- +.++....+.++.+. -++
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~   87 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEA-LGE   87 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHh-cCC
Confidence            35789998 59999999988778898 677776665543322    2223221 111111 122222233333222 246


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|.+.|.
T Consensus        88 id~vi~~Ag~   97 (274)
T PRK07775         88 IEVLVSGAGD   97 (274)
T ss_pred             CCEEEECCCc
Confidence            8999999875

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.20  E-value=0.54  Score=39.41  Aligned_cols=82  Identities=17%  Similarity=0.223  Sum_probs=47.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH----HHHcCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI----ARNLGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~----~~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.++||+| +|.+|..++..+...|. .|++++++.++...    +++.+... .+..+- +..+....+..+.+. -.
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~   82 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVED-FG   82 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-hC
Confidence            457899998 59999999988888898 67778777544332    22222211 111111 112222223233222 23


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|.+|.+.|.
T Consensus        83 ~~d~vi~~ag~   93 (251)
T PRK12826         83 RLDILVANAGI   93 (251)
T ss_pred             CCCEEEECCCC
Confidence            68999998865

>PRK08303 short chain dehydrogenase; Provisional

Probab=94.19  E-value=0.58  Score=40.96  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=27.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      .+.+++|.| ++++|.++++.+...|+ .|+.++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            467899998 58999999998888998 56666665

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=94.18  E-value=1.4  Score=36.73  Aligned_cols=104  Identities=19%  Similarity=0.363  Sum_probs=65.2

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHcCCC----EeeccCCCCcchhHHHHHhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNLGAD----ETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      +....+++.+||-+|+|. |..+..+++..+ ...+++++.+++..+.+++.-..    ..+.+..  .+...    +. 
T Consensus        45 ~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~----~~-  116 (239)
T PRK00216         45 KWLGVRPGDKVLDLACGT-GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQ--GDAEA----LP-  116 (239)
T ss_pred             HHhCCCCCCeEEEeCCCC-CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEe--ccccc----CC-
Confidence            344566788999999887 888888888775 23799999998887777763211    1111100  01110    11 


Q ss_pred             hcCCCccEEEEccC------ChHHHHHHHHhhcCCCEEEEecc
Q 020928          205 AMGSGIDVSFDCVG------FDKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       205 ~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .....+|+|+-..+      -...+..+.+.|+++|.++.+..
T Consensus       117 ~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        117 FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            01346888864321      12467788899999999987754

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.16  E-value=0.61  Score=38.89  Aligned_cols=82  Identities=21%  Similarity=0.278  Sum_probs=49.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEee-ccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADETA-KVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v~-~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      ++.++||+| +|.+|..+++.+...|. .|+.+++++++.+.+    ++.+....+ ..+- +..++...+..+... -.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~   81 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEA-FG   81 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH-hC
Confidence            346899998 59999999998888898 588888877664433    223322211 1111 122233333333322 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|.++.+.|.
T Consensus        82 ~id~vi~~ag~   92 (246)
T PRK05653         82 ALDILVNNAGI   92 (246)
T ss_pred             CCCEEEECCCc
Confidence            68999998865

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.16  E-value=0.8  Score=39.57  Aligned_cols=91  Identities=22%  Similarity=0.365  Sum_probs=60.0

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChh---HHHHHHH-cCCCE-eeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ---RLSIARN-LGADE-TAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~---~~~~~~~-~g~~~-v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .|.+||=+|++. |.....++++ |++.|++++.+..   +.+++++ +|.+. +...       .-.+..+..  .+.|
T Consensus       115 ~gk~VLDIGC~n-GY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-------plgvE~Lp~--~~~F  183 (315)
T PF08003_consen  115 KGKRVLDIGCNN-GYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-------PLGVEDLPN--LGAF  183 (315)
T ss_pred             CCCEEEEecCCC-cHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-------Ccchhhccc--cCCc
Confidence            578899999887 8888787775 8878999998775   3444444 33222 1111       012333332  3579


Q ss_pred             cEEEEccCCh-------HHHHHHHHhhcCCCEEEE
Q 020928          211 DVSFDCVGFD-------KTMSTALNATRPGGKVCL  238 (319)
Q Consensus       211 d~v~d~~g~~-------~~~~~~~~~l~~~G~~v~  238 (319)
                      |+|| |.|.-       +.+..+.++|+++|.+++
T Consensus       184 DtVF-~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvL  217 (315)
T PF08003_consen  184 DTVF-SMGVLYHRRSPLDHLKQLKDSLRPGGELVL  217 (315)
T ss_pred             CEEE-EeeehhccCCHHHHHHHHHHhhCCCCEEEE
Confidence            9999 55542       467788889999999884

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=94.13  E-value=0.47  Score=40.36  Aligned_cols=104  Identities=14%  Similarity=0.195  Sum_probs=59.1

Q ss_pred             CCCeEEEECC---CHHHHHHHHHHHHcCCCeEEEecCC------hhHHHHHHHcC-CCEeeccC-CCCcchhHHHHHhhh
Q 020928          136 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVD------VQRLSIARNLG-ADETAKVS-TDIEDVDTDVGKIQN  204 (319)
Q Consensus       136 ~~~~vlI~G~---g~vG~~ai~la~~~g~~~vv~v~~~------~~~~~~~~~~g-~~~v~~~~-~~~~~~~~~i~~~~~  204 (319)
                      .+++++|.|+   +++|.+++..+...|+ +|+.+.++      ++..+.+++.+ ....+..+ .+.++....+.++.+
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   83 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ   83 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence            4678999985   5899999988888999 45554322      12222222222 11122122 222233334444443


Q ss_pred             hcCCCccEEEEccCCh-------H----------------------HHHHHHHhhcCCCEEEEecc
Q 020928          205 AMGSGIDVSFDCVGFD-------K----------------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~-------~----------------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .. +.+|+++++.|..       .                      ..+.+++.|+.+|+++.++.
T Consensus        84 ~~-g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS  148 (258)
T PRK07370         84 KW-GKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTY  148 (258)
T ss_pred             Hc-CCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEec
Confidence            33 4799999998731       0                      13456667777899888764

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.11  E-value=0.56  Score=39.47  Aligned_cols=80  Identities=20%  Similarity=0.334  Sum_probs=48.5

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCE-eeccC-CCCcchhHHHHHhhhhcCCCc
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .++||.| +|.+|..++..+...|. .|+.+++++++.+.+.+    .+... .+..+ .+.+++...+..+.+. ..++
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~~   79 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAE-FGGL   79 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh-cCCC
Confidence            5789998 59999999988888898 68888887766554433    22211 11111 1222333333344332 2468


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |.+|.+.+.
T Consensus        80 d~vi~~a~~   88 (255)
T TIGR01963        80 DILVNNAGI   88 (255)
T ss_pred             CEEEECCCC
Confidence            999988764

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.10  E-value=0.53  Score=41.04  Aligned_cols=96  Identities=15%  Similarity=0.115  Sum_probs=55.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|+|+|+|++|.+....+...|. .|..+++++++.+.+++.|...  . ...............+  ...+|+||-++-
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~--~-~~~~~~~~~~~~~~~~--~~~~d~vila~k   75 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRL--E-DGEITVPVLAADDPAE--LGPQDLVILAVK   75 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcc--c-CCceeecccCCCChhH--cCCCCEEEEecc
Confidence            58899999999988888777887 6777777777777776655421  0 0000000000000111  146899998887


Q ss_pred             ChH---HHHHHHHhhcCCCEEEEec
Q 020928          219 FDK---TMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       219 ~~~---~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...   .++.+...+.++..++.+.
T Consensus        76 ~~~~~~~~~~l~~~l~~~~~iv~~~  100 (304)
T PRK06522         76 AYQLPAALPSLAPLLGPDTPVLFLQ  100 (304)
T ss_pred             cccHHHHHHHHhhhcCCCCEEEEec
Confidence            642   2333444444555666554

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=94.09  E-value=1.2  Score=41.38  Aligned_cols=102  Identities=22%  Similarity=0.308  Sum_probs=61.5

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      .......++++||=+|+|+ |-.+..+++..+ ...|++++.++++.+.+++    +|...+.....   |..    .+.
T Consensus       243 ~~~l~~~~g~~VLDlgaG~-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~---Da~----~~~  314 (445)
T PRK14904        243 CLLLNPQPGSTVLDLCAAP-GGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEG---DAR----SFS  314 (445)
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeC---ccc----ccc
Confidence            3446678899998887655 444445555432 2379999999998776654    56543221111   111    111


Q ss_pred             hhcCCCccEEEE---ccCCh-------------------------HHHHHHHHhhcCCCEEEEec
Q 020928          204 NAMGSGIDVSFD---CVGFD-------------------------KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       204 ~~~~~~~d~v~d---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g  240 (319)
                        ....||.||-   |.|..                         ..+..+.+.|+++|+++...
T Consensus       315 --~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst  377 (445)
T PRK14904        315 --PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT  377 (445)
T ss_pred             --cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence              1346899863   44321                         24677888999999988654

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=94.07  E-value=0.076  Score=44.92  Aligned_cols=101  Identities=17%  Similarity=0.186  Sum_probs=61.3

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeecc-CC----CCcchhHHHHHhhhhcCC-
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV-ST----DIEDVDTDVGKIQNAMGS-  208 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~-~~----~~~~~~~~i~~~~~~~~~-  208 (319)
                      ++.++|||+|.|. |..+-++++......+.+++-+++-.+.++++-......+ +.    ...|-...+++    ... 
T Consensus        75 ~~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~----~~~~  149 (246)
T PF01564_consen   75 PNPKRVLIIGGGD-GGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE----TQEE  149 (246)
T ss_dssp             SST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----SSST
T ss_pred             CCcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----ccCC
Confidence            3789999998655 5566677777767789999999999898888431100000 00    01122222222    334 


Q ss_pred             CccEEE-EccC---------ChHHHHHHHHhhcCCCEEEEec
Q 020928          209 GIDVSF-DCVG---------FDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       209 ~~d~v~-d~~g---------~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+|+|+ |...         +.+.++.+.++|+++|.++.-.
T Consensus       150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            899986 4443         1357888999999999887543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.07  E-value=0.57  Score=32.38  Aligned_cols=35  Identities=17%  Similarity=0.317  Sum_probs=28.6

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      -.+.+++|+|+|.+|..+.+.+...+..++.+.++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45688999999999999999998886556777655

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=94.06  E-value=1.2  Score=41.11  Aligned_cols=103  Identities=20%  Similarity=0.256  Sum_probs=61.8

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ....+++++++||=.|+|+ |..+..+++..+...|++++.++++.+.+++    +|....+. ..   |... +.... 
T Consensus       237 ~~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~-~~---D~~~-~~~~~-  309 (427)
T PRK10901        237 ATLLAPQNGERVLDACAAP-GGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVI-VG---DARD-PAQWW-  309 (427)
T ss_pred             HHHcCCCCCCEEEEeCCCC-ChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEE-Ec---Cccc-chhhc-
Confidence            3446788999999888765 5555666666542489999999988776654    44332111 11   1110 00010 


Q ss_pred             hcCCCccEEE-E--ccCC-------------------------hHHHHHHHHhhcCCCEEEEe
Q 020928          205 AMGSGIDVSF-D--CVGF-------------------------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       205 ~~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~G~~v~~  239 (319)
                       ....+|.|+ |  |.+.                         ...+..+.+.|++||+++..
T Consensus       310 -~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys  371 (427)
T PRK10901        310 -DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA  371 (427)
T ss_pred             -ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence             134689986 2  3321                         13567788899999998754

>PRK07791 short chain dehydrogenase; Provisional

Probab=94.06  E-value=0.57  Score=40.53  Aligned_cols=83  Identities=24%  Similarity=0.398  Sum_probs=48.2

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh---------hH-HHHHHHc---CCCE-eeccC-CCCcchhHH
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV---------QR-LSIARNL---GADE-TAKVS-TDIEDVDTD  198 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~---------~~-~~~~~~~---g~~~-v~~~~-~~~~~~~~~  198 (319)
                      -++.++||+| ++++|.++++.+...|+ .|+.++++.         ++ .+..+++   +... .+..+ .+.++....
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~   82 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL   82 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence            3578999998 69999999988778898 566655432         22 2222322   3221 11111 222233334


Q ss_pred             HHHhhhhcCCCccEEEEccCC
Q 020928          199 VGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       199 i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      +.++.+.. +.+|++|++.|.
T Consensus        83 ~~~~~~~~-g~id~lv~nAG~  102 (286)
T PRK07791         83 VDAAVETF-GGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHHhc-CCCCEEEECCCC
Confidence            44444333 469999999885

>PLN00203 glutamyl-tRNA reductase

Probab=94.04  E-value=0.39  Score=45.22  Aligned_cols=74  Identities=15%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      +.+|+|+|+|.+|.+++..+...|+..|+++.++.++.+.+. +++...+ .+.    .+ +.+...    -.+.|+||.
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i-~~~----~~-~dl~~a----l~~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEI-IYK----PL-DEMLAC----AAEADVVFT  335 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCce-Eee----cH-hhHHHH----HhcCCEEEE
Confidence            678999999999999999998899877888999888766554 4532111 110    11 111111    136899999


Q ss_pred             ccCCh
Q 020928          216 CVGFD  220 (319)
Q Consensus       216 ~~g~~  220 (319)
                      |++.+
T Consensus       336 AT~s~  340 (519)
T PLN00203        336 STSSE  340 (519)
T ss_pred             ccCCC
Confidence            98775

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=94.04  E-value=0.47  Score=43.30  Aligned_cols=38  Identities=21%  Similarity=0.417  Sum_probs=30.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL  174 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~  174 (319)
                      ++++++|.| +|++|.+++..+...|. +|+++++++++.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l  215 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKI  215 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence            467999998 59999999998888898 677777766554

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.01  E-value=0.62  Score=39.53  Aligned_cols=82  Identities=18%  Similarity=0.340  Sum_probs=47.1

Q ss_pred             CCCeEEEECC---CHHHHHHHHHHHHcCCCeEEEecCCh--hHH-HHHHHcCCC-EeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGS---GPIGLVTLLAARAFGAPRIIITDVDV--QRL-SIARNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~---g~vG~~ai~la~~~g~~~vv~v~~~~--~~~-~~~~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .+++++|.|+   +++|.++.+.+...|+ +|+.++++.  +.. +..++++.. ..+..+ .+.++....+.++.+. .
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~-~   83 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREH-V   83 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHH-c
Confidence            4678999984   7999999988778898 577666543  322 233334321 112112 1222333333333332 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus        84 g~iD~li~nAG~   95 (256)
T PRK07889         84 DGLDGVVHSIGF   95 (256)
T ss_pred             CCCcEEEEcccc
Confidence            579999998874

>PRK09134 short chain dehydrogenase; Provisional

Probab=94.01  E-value=0.65  Score=39.35  Aligned_cols=83  Identities=17%  Similarity=0.199  Sum_probs=45.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHH---cCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARN---LGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~---~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.++||.| +|.+|..++..+...|.+.++...++.++.+ ..++   .+... .+..+- +..+....+.+..+. .+
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~-~~   86 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAA-LG   86 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence            456899998 5999999888888889843333333333332 2222   23221 111111 122222233333322 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|.+.|.
T Consensus        87 ~iD~vi~~ag~   97 (258)
T PRK09134         87 PITLLVNNASL   97 (258)
T ss_pred             CCCEEEECCcC
Confidence            79999999874

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.98  E-value=0.6  Score=40.33  Aligned_cols=87  Identities=20%  Similarity=0.183  Sum_probs=54.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|.|+|.|.+|......++..|. .|.+.++++++.+.+.+.|.....   ..  +    .. .    -...|+||-|+.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~---~~--~----~~-~----~~~aDlVilavp   66 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEA---ST--D----LS-L----LKDCDLVILALP   66 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCcccc---cC--C----Hh-H----hcCCCEEEEcCC
Confidence            58889999999988888887887 788999998888888777642110   00  1    00 0    135788888877


Q ss_pred             ChHH---HHHHHHhhcCCCEEEEec
Q 020928          219 FDKT---MSTALNATRPGGKVCLIG  240 (319)
Q Consensus       219 ~~~~---~~~~~~~l~~~G~~v~~g  240 (319)
                      ....   ++.+...++++..+..++
T Consensus        67 ~~~~~~~~~~l~~~l~~~~ii~d~~   91 (279)
T PRK07417         67 IGLLLPPSEQLIPALPPEAIVTDVG   91 (279)
T ss_pred             HHHHHHHHHHHHHhCCCCcEEEeCc
Confidence            5422   233333444444444444

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=93.97  E-value=1.7  Score=38.09  Aligned_cols=30  Identities=27%  Similarity=0.329  Sum_probs=25.4

Q ss_pred             CCCeEEEECC---CHHHHHHHHHHHHcCCCeEEE
Q 020928          136 PETNVMIMGS---GPIGLVTLLAARAFGAPRIII  166 (319)
Q Consensus       136 ~~~~vlI~G~---g~vG~~ai~la~~~g~~~vv~  166 (319)
                      .|+++||+|+   .++|.++.+.+...|+ +|+.
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~   40 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV   40 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE
Confidence            4788999986   8999999999999999 4555

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=93.93  E-value=0.81  Score=34.15  Aligned_cols=94  Identities=19%  Similarity=0.159  Sum_probs=48.9

Q ss_pred             eEEEECC-CHHHHHHHHHHHH-cCCCeEEEecCChhH---HHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          139 NVMIMGS-GPIGLVTLLAARA-FGAPRIIITDVDVQR---LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       139 ~vlI~G~-g~vG~~ai~la~~-~g~~~vv~v~~~~~~---~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +|.|+|+ |-+|..+++.+.. .+...+.++++.++.   .+.-+-.+..      .........+..+.    ..+|++
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~------~~~~~v~~~l~~~~----~~~DVv   71 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG------PLGVPVTDDLEELL----EEADVV   71 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS------T-SSBEBS-HHHHT----TH-SEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC------CcccccchhHHHhc----ccCCEE
Confidence            5889997 9999999998887 677545555555411   1111111111      00111112233332    238999


Q ss_pred             EEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          214 FDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +|+.. ++.....++.....|.=+.+|.++
T Consensus        72 IDfT~-p~~~~~~~~~~~~~g~~~ViGTTG  100 (124)
T PF01113_consen   72 IDFTN-PDAVYDNLEYALKHGVPLVIGTTG  100 (124)
T ss_dssp             EEES--HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred             EEcCC-hHHhHHHHHHHHhCCCCEEEECCC
Confidence            99885 555555555555556555555443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK14968 putative methyltransferase; Provisional

Probab=93.92  E-value=0.39  Score=38.45  Aligned_cols=43  Identities=23%  Similarity=0.474  Sum_probs=33.1

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  179 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~  179 (319)
                      ..+++++|..|+|. |..+..+++. +. .+++++.+++..+.+++
T Consensus        21 ~~~~~~vLd~G~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~   63 (188)
T PRK14968         21 DKKGDRVLEVGTGS-GIVAIVAAKN-GK-KVVGVDINPYAVECAKC   63 (188)
T ss_pred             ccCCCEEEEEcccc-CHHHHHHHhh-cc-eEEEEECCHHHHHHHHH
Confidence            47788999998766 6677777777 65 79999999887776643

>PRK05650 short chain dehydrogenase; Provisional

Probab=93.90  E-value=0.62  Score=39.78  Aligned_cols=79  Identities=23%  Similarity=0.307  Sum_probs=46.1

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-H---HcCCCE-eeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-R---NLGADE-TAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~---~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +++|+| +|.+|..++..+...|. .|+.++++.++.+.+ +   ..+... .+..+- +..+....+..+... ..++|
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~-~~~id   79 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEK-WGGID   79 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH-cCCCC
Confidence            688998 59999999988777898 677777776654422 2   223222 111121 112222233333222 24799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|.+.|.
T Consensus        80 ~lI~~ag~   87 (270)
T PRK05650         80 VIVNNAGV   87 (270)
T ss_pred             EEEECCCC
Confidence            99999885

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.88  E-value=0.84  Score=41.30  Aligned_cols=35  Identities=31%  Similarity=0.439  Sum_probs=31.1

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      .+.+|+|+|+|++|..++..+.+.|+..+..++..
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45689999999999999999999999888888775

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=93.87  E-value=1.5  Score=40.63  Aligned_cols=101  Identities=16%  Similarity=0.240  Sum_probs=61.1

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ..+++++++||=.|+|+ |..++.+++.. +...|++++.++++.+.+++    +|...+.....   |.......+   
T Consensus       245 ~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~---D~~~~~~~~---  317 (444)
T PRK14902        245 ALDPKGGDTVLDACAAP-GGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKAL---DARKVHEKF---  317 (444)
T ss_pred             HhCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC---Ccccccchh---
Confidence            45678889988887655 55566666665 22379999999988776654    55544222111   211111111   


Q ss_pred             cCCCccEEEE---ccCC-------------------------hHHHHHHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSFD---CVGF-------------------------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~d---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~  239 (319)
                       ...+|.|+-   |.|.                         .+.+..+.+.|+++|+++..
T Consensus       318 -~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys  378 (444)
T PRK14902        318 -AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS  378 (444)
T ss_pred             -cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence             246898863   2221                         12567788899999998854

>PRK07577 short chain dehydrogenase; Provisional

Probab=93.87  E-value=0.36  Score=40.10  Aligned_cols=74  Identities=22%  Similarity=0.328  Sum_probs=45.7

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccEEE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      +.++||.| +|.+|..+++.+...|. +|+.+.++.++     .... .++..+ .+.++....+.++.+  ..++|++|
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~-----~~~~-~~~~~D~~~~~~~~~~~~~~~~--~~~~d~vi   73 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAID-----DFPG-ELFACDLADIEQTAATLAQINE--IHPVDAIV   73 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCccc-----ccCc-eEEEeeCCCHHHHHHHHHHHHH--hCCCcEEE
Confidence            57899998 59999999998888898 67777776543     1111 222211 122233333444433  23689999


Q ss_pred             EccCC
Q 020928          215 DCVGF  219 (319)
Q Consensus       215 d~~g~  219 (319)
                      .+.|.
T Consensus        74 ~~ag~   78 (234)
T PRK07577         74 NNVGI   78 (234)
T ss_pred             ECCCC
Confidence            98875

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=93.86  E-value=0.83  Score=36.45  Aligned_cols=44  Identities=25%  Similarity=0.373  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  179 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~  179 (319)
                      ...++++||-.|+|. |..+..+++. +. .+++++.+++..+.+++
T Consensus        16 ~~~~~~~vLdlG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~   59 (179)
T TIGR00537        16 RELKPDDVLEIGAGT-GLVAIRLKGK-GK-CILTTDINPFAVKELRE   59 (179)
T ss_pred             HhcCCCeEEEeCCCh-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHH
Confidence            344567888888766 6666666664 44 79999999988777665

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=93.83  E-value=0.74  Score=38.29  Aligned_cols=104  Identities=11%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeec-------cCC-----CCcchhH
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAK-------VST-----DIEDVDT  197 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~-------~~~-----~~~~~~~  197 (319)
                      .....++.+|||-|+|- |.-++.||. .|. .|++++-++...+.+.+ .+....+.       +..     -..|+- 
T Consensus        38 ~l~~~~~~rvLvPgCGk-g~D~~~LA~-~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f-  113 (226)
T PRK13256         38 KLNINDSSVCLIPMCGC-SIDMLFFLS-KGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIF-  113 (226)
T ss_pred             hcCCCCCCeEEEeCCCC-hHHHHHHHh-CCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCc-
Confidence            34455778999999987 888888877 588 69999999988776543 32211000       000     001111 


Q ss_pred             HHHHhhh--hcCCCccEEEEccCC--------hHHHHHHHHhhcCCCEEEEecc
Q 020928          198 DVGKIQN--AMGSGIDVSFDCVGF--------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       198 ~i~~~~~--~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                         ++..  ...+.+|.|+|...=        ....+.+.+.|+++|+++.+..
T Consensus       114 ---~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        114 ---NLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             ---CCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence               1110  112468999885432        1356778889999999887764

>PRK06932 glycerate dehydrogenase; Provisional

Probab=93.83  E-value=0.35  Score=42.52  Aligned_cols=86  Identities=13%  Similarity=0.146  Sum_probs=56.3

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.++.|+|.|.+|...+++++.+|. +|+..++....     ....    .+    .+    +.++.    ...|+|.-
T Consensus       146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~~~-----~~~~----~~----~~----l~ell----~~sDiv~l  203 (314)
T PRK06932        146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKGAS-----VCRE----GY----TP----FEEVL----KQADIVTL  203 (314)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCccc-----cccc----cc----CC----HHHHH----HhCCEEEE
Confidence            46899999999999999999999999 67777653211     0000    00    11    22222    24688876


Q ss_pred             ccCChHH-----HHHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFDKT-----MSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~~~-----~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +..-...     -...+..|+++..++.++...
T Consensus       204 ~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~  236 (314)
T PRK06932        204 HCPLTETTQNLINAETLALMKPTAFLINTGRGP  236 (314)
T ss_pred             cCCCChHHhcccCHHHHHhCCCCeEEEECCCcc
Confidence            6653221     245678899999999887543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=93.80  E-value=0.5  Score=41.93  Aligned_cols=104  Identities=22%  Similarity=0.281  Sum_probs=64.5

Q ss_pred             HHhcCC-CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          129 CRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       129 l~~~~~-~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      ++...+ .++.+||-+|+|. |..+..+++..+...+++++.+++-.+.+++.....-+.+  ...+    +..+.. ..
T Consensus       105 l~~~~l~~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~--i~gD----~e~lp~-~~  176 (340)
T PLN02490        105 LEPADLSDRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI--IEGD----AEDLPF-PT  176 (340)
T ss_pred             HhhcccCCCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeE--Eecc----HHhCCC-CC
Confidence            344444 4678898898876 7777788887654579999999888777766321110111  0111    111111 13


Q ss_pred             CCccEEEEccC-----C-hHHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSFDCVG-----F-DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+|+|+.+-.     . ...++.+.+.|+++|+++..+
T Consensus       177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            46898876421     1 235788999999999998765

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=93.80  E-value=2.1  Score=35.49  Aligned_cols=104  Identities=18%  Similarity=0.192  Sum_probs=66.2

Q ss_pred             CCCCeEEEEC-C--CHHHHHHHHHHHHcCCCeEEEecCCh----hHHHHHHHcCCCEeeccCC-CCcchhHHHHHhhhhc
Q 020928          135 GPETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDV----QRLSIARNLGADETAKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       135 ~~~~~vlI~G-~--g~vG~~ai~la~~~g~~~vv~v~~~~----~~~~~~~~~g~~~v~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      =.|++.||.| +  -+++....+.++..|+...+.- -.+    +-.+++++++.+.++..+- ++++......++.+. 
T Consensus         4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy-~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~-   81 (259)
T COG0623           4 LEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTY-QGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKK-   81 (259)
T ss_pred             cCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEe-ccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHh-
Confidence            4689999998 4  6889999999999999544433 222    2244666677766654432 233333333333332 


Q ss_pred             CCCccEEEEccCCh-----------------------------HHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSFDCVGFD-----------------------------KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~d~~g~~-----------------------------~~~~~~~~~l~~~G~~v~~g  240 (319)
                      =+++|.++.+++-.                             +....+...|.++|.++.+.
T Consensus        82 ~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt  144 (259)
T COG0623          82 WGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT  144 (259)
T ss_pred             hCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE
Confidence            24788888877653                             13456667889999888765

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.78  E-value=0.55  Score=45.30  Aligned_cols=93  Identities=15%  Similarity=0.086  Sum_probs=65.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +.++|.|.|.+|+.+++.++..|. .+++++.++++.+.+++.|...+. -+..+++   .++   +.+-.++|.++-+.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~-GDat~~~---~L~---~agi~~A~~vv~~~  472 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYY-GDATQLE---LLR---AAGAEKAEAIVITC  472 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEE-eeCCCHH---HHH---hcCCccCCEEEEEe
Confidence            578999999999999999999998 699999999999999998854432 2222222   222   22345789999999


Q ss_pred             CChHHHH---HHHHhhcCCCEEEE
Q 020928          218 GFDKTMS---TALNATRPGGKVCL  238 (319)
Q Consensus       218 g~~~~~~---~~~~~l~~~G~~v~  238 (319)
                      ++++...   ...+.+.|.-+++.
T Consensus       473 ~d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        473 NEPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEE
Confidence            8864322   23445566666654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=93.76  E-value=2.7  Score=37.02  Aligned_cols=101  Identities=16%  Similarity=0.165  Sum_probs=61.3

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHH-HHHcCCCeEEEecCChhHHHH-HHHcCCC--EeeccCCCCcchhHHHHHhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLA-ARAFGAPRIIITDVDVQRLSI-ARNLGAD--ETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~l-a~~~g~~~vv~v~~~~~~~~~-~~~~g~~--~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      .+...-+...+++|+|+|..|...+.. +...+...|.+.++++++.+. ++++...  .+...    .+    ..+.  
T Consensus       117 ~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~----~~----~~~a--  186 (314)
T PRK06141        117 ASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVV----TD----LEAA--  186 (314)
T ss_pred             HHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEe----CC----HHHH--
Confidence            344334567899999999999888764 444677789999998877554 4444211  11111    11    1111  


Q ss_pred             hcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc
Q 020928          205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                        -.+.|+|+.+.+++..+ ...+.++++-.+..+|..
T Consensus       187 --v~~aDIVi~aT~s~~pv-l~~~~l~~g~~i~~ig~~  221 (314)
T PRK06141        187 --VRQADIISCATLSTEPL-VRGEWLKPGTHLDLVGNF  221 (314)
T ss_pred             --HhcCCEEEEeeCCCCCE-ecHHHcCCCCEEEeeCCC
Confidence              13689999988865221 112567887766666643

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=93.71  E-value=0.97  Score=36.82  Aligned_cols=34  Identities=15%  Similarity=0.192  Sum_probs=29.6

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      ..+|+|.|+|++|.-++..+-+.|+..+..+|..
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4689999999999999999999999888888643

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=93.69  E-value=0.63  Score=37.77  Aligned_cols=99  Identities=14%  Similarity=0.136  Sum_probs=61.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ....+|-+|+|. |..+..+|+...-..+++++.+++..+.+++    .+...+...   ..+..+......  ....+|
T Consensus        16 ~~~~ilDiGcG~-G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i---~~d~~~~~~~~~--~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGK-GRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVL---CGDANELLDKFF--PDGSLS   89 (194)
T ss_pred             CCceEEEeCCCc-cHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEE---ccCHHHHHHhhC--CCCcee
Confidence            334666689887 8888899987654479999999887665543    333222111   112222211111  123588


Q ss_pred             EEEEccCC--------------hHHHHHHHHhhcCCCEEEEec
Q 020928          212 VSFDCVGF--------------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       212 ~v~d~~g~--------------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .++-....              ++.+..+.+.|+++|++....
T Consensus        90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091        90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence            88765443              246888999999999987653

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=93.67  E-value=0.7  Score=40.63  Aligned_cols=91  Identities=19%  Similarity=0.178  Sum_probs=61.6

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE-
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS-  213 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v-  213 (319)
                      ..|++|.|+|.|.+|....+-++.+| ..+.-..+.+.+.+...+.++..+        ++.+    +    ....|++ 
T Consensus       160 ~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~~~~~~--------d~~~----~----~~~sD~iv  222 (336)
T KOG0069|consen  160 LEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEYYAEFV--------DIEE----L----LANSDVIV  222 (336)
T ss_pred             ccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHhccccc--------CHHH----H----HhhCCEEE
Confidence            46789999999999999999999999 567777776666666666555421        2222    2    1245665 


Q ss_pred             EEccCChHHH----HHHHHhhcCCCEEEEeccc
Q 020928          214 FDCVGFDKTM----STALNATRPGGKVCLIGLA  242 (319)
Q Consensus       214 ~d~~g~~~~~----~~~~~~l~~~G~~v~~g~~  242 (319)
                      +.|-.++.+.    ...+..|++++.++.++..
T Consensus       223 v~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG  255 (336)
T KOG0069|consen  223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARG  255 (336)
T ss_pred             EecCCCHHHHHHhhHHHHHhcCCCeEEEecccc
Confidence            5555554321    2456688999999888754

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.65  E-value=1.3  Score=35.77  Aligned_cols=41  Identities=24%  Similarity=0.504  Sum_probs=32.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  177 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~  177 (319)
                      ++.+++|+| +|.+|..++..+...|. .|+.+.++.++.+.+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l   68 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKA   68 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            567899998 59999988888777887 777777877765544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.65  E-value=0.65  Score=42.25  Aligned_cols=41  Identities=15%  Similarity=0.267  Sum_probs=32.1

Q ss_pred             cCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH
Q 020928          132 ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  173 (319)
Q Consensus       132 ~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~  173 (319)
                      .+-..+.+|||+| +|.+|..++..+...|. .|++++++.++
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~   96 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG   96 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh
Confidence            3445677999998 59999999998888898 67777776543

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=93.65  E-value=0.77  Score=38.97  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=46.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC-hhHHH-H---HHHcCCCE-eeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD-VQRLS-I---ARNLGADE-TAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~-~~~~~-~---~~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      ++.++||.| +|.+|..+++.+...|+ .++.+.++ ++..+ .   ++..+... .+..+ .+.++....+.++.+.. 
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~-   83 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF-   83 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc-
Confidence            567999998 69999999998888998 45555443 33222 2   22223211 11111 12222223333333322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      .++|+++.+.|.
T Consensus        84 g~id~lv~~ag~   95 (261)
T PRK08936         84 GTLDVMINNAGI   95 (261)
T ss_pred             CCCCEEEECCCC
Confidence            469999999885

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=93.62  E-value=0.57  Score=36.23  Aligned_cols=98  Identities=19%  Similarity=0.372  Sum_probs=62.3

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHc--CCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAF--GAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~--g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      +.+.+||=.|+|. |.....+++..  +. .++.+|.+++..+.+++    ++...+..+..   +..+ +.+.   ...
T Consensus         2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~-~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~---d~~~-l~~~---~~~   72 (152)
T PF13847_consen    2 KSNKKILDLGCGT-GRLLIQLAKELNPGA-KIIGVDISEEMIEYAKKRAKELGLDNIEFIQG---DIED-LPQE---LEE   72 (152)
T ss_dssp             TTTSEEEEET-TT-SHHHHHHHHHSTTTS-EEEEEESSHHHHHHHHHHHHHTTSTTEEEEES---BTTC-GCGC---SST
T ss_pred             CCCCEEEEecCcC-cHHHHHHHHhcCCCC-EEEEEECcHHHHHHhhcccccccccccceEEe---ehhc-cccc---cCC
Confidence            4667888888776 77777888543  44 79999999998887766    45542211111   2211 1110   015


Q ss_pred             CccEEEEcc-----CCh-HHHHHHHHhhcCCCEEEEecc
Q 020928          209 GIDVSFDCV-----GFD-KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       209 ~~d~v~d~~-----g~~-~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .+|+|+...     ... ..++.+.+.|+++|.++....
T Consensus        73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~  111 (152)
T PF13847_consen   73 KFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDP  111 (152)
T ss_dssp             TEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            799998863     222 357888999999999886643

...

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=93.62  E-value=2.5  Score=38.08  Aligned_cols=110  Identities=18%  Similarity=0.205  Sum_probs=70.0

Q ss_pred             HhcCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEec--CChhHHHHHHHcCCCEeeccCCCC---cc---------
Q 020928          130 RRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDI---ED---------  194 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~--~~~~~~~~~~~~g~~~v~~~~~~~---~~---------  194 (319)
                      +++.+.||.+.+|.. +|+.|.++...|+.+|.+-++++.  .+.++.+.++.+|++.+.. ....   ..         
T Consensus       103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~-~~~~~~~~~~~~a~~l~~  181 (368)
T PLN02556        103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLT-DPTKGMGGTVKKAYELLE  181 (368)
T ss_pred             HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE-CCCCCccHHHHHHHHHHH
Confidence            446678887777766 799999999999999997666654  3567889999999876542 1000   00         


Q ss_pred             ----------h----------hHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhh---cCCCEEEEec
Q 020928          195 ----------V----------DTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT---RPGGKVCLIG  240 (319)
Q Consensus       195 ----------~----------~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l---~~~G~~v~~g  240 (319)
                                +          ...-.++.++.++.+|.++-++|+..++.-+.+.+   .+.=+++.+.
T Consensus       182 ~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVe  250 (368)
T PLN02556        182 STPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVE  250 (368)
T ss_pred             hcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEe
Confidence                      0          00111233333346899998888876665555555   3444666554

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=93.62  E-value=2.4  Score=36.96  Aligned_cols=49  Identities=20%  Similarity=0.314  Sum_probs=37.7

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC--ChhHHHHHHHcCCCEe
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV--DVQRLSIARNLGADET  185 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~--~~~~~~~~~~~g~~~v  185 (319)
                      .+.|+..++|..|.++...++.+|.+.++++..  ++++.+.++.+|+..+
T Consensus        65 ~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi  115 (304)
T cd01562          65 AKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVV  115 (304)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEE
Confidence            455655678999999999999999976666643  5568888899997644

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>PTZ00146 fibrillarin; Provisional

Probab=93.60  E-value=1.2  Score=38.48  Aligned_cols=105  Identities=12%  Similarity=0.159  Sum_probs=61.6

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHH-HHHHHcCC-CEeeccCCCCcchhHHHHHhhh
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRL-SIARNLGA-DETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~-~~~~~~g~-~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      .+....++++++||=+|+|+ |..+..++...|- ..|++++.+++.. ++++.... ..+..+..+... ......+  
T Consensus       124 g~~~l~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~-p~~y~~~--  199 (293)
T PTZ00146        124 GVANIPIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARY-PQKYRML--  199 (293)
T ss_pred             CcceeccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccC-hhhhhcc--
Confidence            34567899999999889876 7788888888753 2799998886533 22222111 111111111000 0111111  


Q ss_pred             hcCCCccEEEEccCChH----HHHHHHHhhcCCCEEEE
Q 020928          205 AMGSGIDVSFDCVGFDK----TMSTALNATRPGGKVCL  238 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~~----~~~~~~~~l~~~G~~v~  238 (319)
                        ...+|+||-.+..++    ....+.+.|+++|+++.
T Consensus       200 --~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI  235 (293)
T PTZ00146        200 --VPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFII  235 (293)
T ss_pred             --cCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEE
Confidence              125899987665543    23456679999999987

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=93.59  E-value=1.8  Score=38.35  Aligned_cols=95  Identities=21%  Similarity=0.176  Sum_probs=60.7

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEecCChhHHHH-HHHc----CCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAAR-AFGAPRIIITDVDVQRLSI-ARNL----GADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~-~~g~~~vv~v~~~~~~~~~-~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      .+...+++|+|+|..+.+.+..+. ..++++|.+.+++.++.+. ++++    +.. +..+    .+    +.+.    -
T Consensus       126 ~~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~----~~----~~~a----v  192 (326)
T TIGR02992       126 REDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAA----TD----PRAA----M  192 (326)
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEe----CC----HHHH----h
Confidence            445678999999999987777665 5788789899998877553 3433    321 1111    11    1111    1


Q ss_pred             CCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc
Q 020928          208 SGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       208 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      .+.|+|+.|.+.... -...+.++++-.+..+|..
T Consensus       193 ~~aDiVvtaT~s~~p-~i~~~~l~~g~~i~~vg~~  226 (326)
T TIGR02992       193 SGADIIVTTTPSETP-ILHAEWLEPGQHVTAMGSD  226 (326)
T ss_pred             ccCCEEEEecCCCCc-EecHHHcCCCcEEEeeCCC
Confidence            368999999887531 1123467888777778753

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK05855 short chain dehydrogenase; Validated

Probab=93.58  E-value=0.61  Score=44.59  Aligned_cols=82  Identities=21%  Similarity=0.270  Sum_probs=49.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCC-EeeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.++||+| +|++|..+++.+...|. .|+.+++++++.+.+.    +.|.. ..+..+ .+.++....+.++.+. .+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~-~g  391 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAE-HG  391 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHh-cC
Confidence            356889998 59999998888888898 5777888776654332    22321 111111 1222222333333322 34


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|++|++.|.
T Consensus       392 ~id~lv~~Ag~  402 (582)
T PRK05855        392 VPDIVVNNAGI  402 (582)
T ss_pred             CCcEEEECCcc
Confidence            69999999885

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=93.56  E-value=0.57  Score=39.12  Aligned_cols=98  Identities=20%  Similarity=0.214  Sum_probs=60.4

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      ....++.+||-+|+|. |..+..+++. +. .++.++.++...+.+++.    +...  .+.  ..+..    .+....+
T Consensus        44 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~iD~s~~~~~~a~~~~~~~~~~~--~~~--~~~~~----~~~~~~~  112 (233)
T PRK05134         44 AGGLFGKRVLDVGCGG-GILSESMARL-GA-DVTGIDASEENIEVARLHALESGLKI--DYR--QTTAE----ELAAEHP  112 (233)
T ss_pred             ccCCCCCeEEEeCCCC-CHHHHHHHHc-CC-eEEEEcCCHHHHHHHHHHHHHcCCce--EEE--ecCHH----HhhhhcC
Confidence            3456788898899875 7777777774 66 689999888877666542    2211  110  11211    1111124


Q ss_pred             CCccEEEE-----ccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSFD-----CVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~d-----~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+|+|+-     ..... ..+..+.+.|+++|+++...
T Consensus       113 ~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        113 GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             CCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence            57999853     33332 35678888999999988653

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=93.56  E-value=0.89  Score=39.95  Aligned_cols=81  Identities=23%  Similarity=0.342  Sum_probs=47.7

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcC-CCeEEEecCChhHHH-HHHHcCC--CE--eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFG-APRIIITDVDVQRLS-IARNLGA--DE--TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~-~~~~~g~--~~--v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      +.+++|.| ++++|..++..+...| . +|+.+.+++++.+ ..+++..  ..  .+..+ .+.++....+.++.+. .+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~~   80 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRES-GR   80 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHh-CC
Confidence            56889998 5999999888777789 6 6777777766544 3333431  11  11111 1122233333333322 34


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|.+.|.
T Consensus        81 ~iD~lI~nAG~   91 (314)
T TIGR01289        81 PLDALVCNAAV   91 (314)
T ss_pred             CCCEEEECCCc
Confidence            79999998874

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=93.53  E-value=1.6  Score=36.98  Aligned_cols=104  Identities=14%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .+..+.+++|-+|++. |..++.+|+.++- .++++++..++..+.+++    .|...-+.+  ...+..+.+.++....
T Consensus        75 ~~~~~ak~iLEiGT~~-GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~--~~G~a~e~L~~l~~~~  151 (247)
T PLN02589         75 LKLINAKNTMEIGVYT-GYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDF--REGPALPVLDQMIEDG  151 (247)
T ss_pred             HHHhCCCEEEEEeChh-hHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEE--EeccHHHHHHHHHhcc
Confidence            4556677899999743 7888888887632 279999998887776654    453332222  1234455555554321


Q ss_pred             --CCCccEEEEccCCh---HHHHHHHHhhcCCCEEEE
Q 020928          207 --GSGIDVSFDCVGFD---KTMSTALNATRPGGKVCL  238 (319)
Q Consensus       207 --~~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~  238 (319)
                        ...||.||--..-.   ..+..++++|+++|.++.
T Consensus       152 ~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        152 KYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             ccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence              25799986433321   356777889999998764

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=93.49  E-value=0.83  Score=36.74  Aligned_cols=81  Identities=23%  Similarity=0.411  Sum_probs=50.9

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh-hHHHHHHHcCC--CE-eeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV-QRLSIARNLGA--DE-TAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~-~~~~~~~~~g~--~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ...+|.| ++++|.+..|++-..|+ ++++.+... ...+.++.++.  ++ .+.-+ +...+....+++..+..+ .++
T Consensus        15 k~~~vtGg~sGIGrAia~~la~~Ga-rv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g-~ps   92 (256)
T KOG1200|consen   15 KVAAVTGGSSGIGRAIAQLLAKKGA-RVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLG-TPS   92 (256)
T ss_pred             ceeEEecCCchHHHHHHHHHHhcCc-EEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcC-CCc
Confidence            3456676 69999999999999999 666665544 45566677765  22 22111 122233333444444334 799


Q ss_pred             EEEEccCCh
Q 020928          212 VSFDCVGFD  220 (319)
Q Consensus       212 ~v~d~~g~~  220 (319)
                      ++++|.|-.
T Consensus        93 vlVncAGIt  101 (256)
T KOG1200|consen   93 VLVNCAGIT  101 (256)
T ss_pred             EEEEcCccc
Confidence            999999963

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.49  E-value=1.2  Score=38.72  Aligned_cols=38  Identities=13%  Similarity=0.257  Sum_probs=32.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHH
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  176 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~  176 (319)
                      .+|.|+|+|.+|....+.+...|. .|+..+.+++..+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATA   43 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHH
Confidence            479999999999888888888898 79999999887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		8e-79
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		2e-74
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		5e-74
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		6e-73
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		3e-50
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		8e-38
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		8e-38
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		2e-37
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		6e-34
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		6e-30
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		2e-29
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		8e-29
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		4e-23
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		5e-23
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		5e-23
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		2e-22
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		2e-21
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		4e-21
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		4e-21
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		2e-20
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		8e-20
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		8e-20
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		9e-20
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		7e-19
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		9e-18
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		1e-17
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		1e-17
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		1e-17
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-17
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		2e-17
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		2e-17
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-17
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-17
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-17
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		3e-17
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		4e-17
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		6e-17
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		6e-17
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		6e-17
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		7e-17
3ip1_A	404	Structure Of Putative Alcohol Dehydrogenase (Tm_042		8e-17
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		9e-17
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		1e-16
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		1e-16
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		1e-16
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		2e-16
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		3e-16
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		3e-16
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		4e-16
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		5e-16
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		7e-16
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		2e-15
1jvb_A	347	Alcohol Dehydrogenase From The Archaeon Sulfolobus		2e-15
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		2e-15
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		2e-15
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		5e-15
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		2e-14
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		2e-14
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		1e-13
2dph_A	398	Crystal Structure Of Formaldehyde Dismutase Length		5e-13
1kol_A	398	Crystal Structure Of Formaldehyde Dehydrogenase Len		6e-13
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		1e-12
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		1e-12
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		1e-11
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		1e-11
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		2e-11
1y9a_A	360	Alcohol Dehydrogenase From Entamoeba Histolotica In		5e-11
2oui_A	360	D275p Mutant Of Alcohol Dehydrogenase From Protozoa		8e-11
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-10
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		1e-10
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		1e-10
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		2e-10
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		5e-10
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		6e-10
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		8e-10
3fpc_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-09
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		3e-09
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		2e-08
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		7e-08
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		2e-07
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		4e-07
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		7e-07
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		1e-06
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		2e-06
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		4e-06
3krt_A	456	Crystal Structure Of Putative Crotonyl Coa Reductas		2e-05
2b5v_A	357	Crystal Structure Of Glucose Dehydrogenase From Hal		4e-04
2cd9_A	366	Sulfolobus Solfataricus Glucose Dehydrogenase 1 - A		4e-04
2b5w_A	357	Crystal Structure Of D38c Glucose Dehydrogenase Mut		4e-04
2cdb_A	366	Sulfolobus Solfataricus Glucose Dehydrogenase 1 In		5e-04
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		6e-04

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score =  290 bits (742), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 149/316 (47%), Positives = 209/316 (66%), Gaps = 4/316 (1%)
Query: 4   AVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGIS 63
           A    C  +V Y +  R A+FIVK PMVIGHE +G + +VG  VK L+ GDRVA+EPG+ 
Sbjct: 36  AYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVP 95
Query: 64  CGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS 123
           C  C  CK G YNLCP++ F  +PP +G+LA   VH A  C+KLPDNVSLEEGA+ EPLS
Sbjct: 96  CRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLS 155
Query: 124 VGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 183
           VGVHACRRA V   T V+++G+GPIGLV++LAA+A+GA  ++ T    +RL +A+N GAD
Sbjct: 156 VGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGAD 214
Query: 184 ETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK 243
            T  V    E+  + + +I++A+G   +V+ DC G +K ++  +N TR GG + L+G+  
Sbjct: 215 VTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS 274
Query: 244 TEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAF 303
             +TV L  A ARE+D+  +FRY + +P+ +E + SG+ +VK L+TH F   Q    DAF
Sbjct: 275 QMVTVPLVNACAREIDIKSVFRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQ--TVDAF 332
Query: 304 EIS-AQGGNAIKVMFN 318
           E +  +  N IKVM +
Sbjct: 333 EAARKKADNTIKVMIS 348

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score =  275 bits (704), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 143/310 (46%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y +  R  NFIVKKPMV+GHE +G +E+VGS VK L+ GDRVA+EPG    +  
Sbjct: 44  CGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDE 103
Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct: 104 FCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHA 163
Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRR  V     V++ G+GPIG+VTLL A+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct: 164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI 223
Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           S   E       K++  +G   +V+ +C G + ++   + ATR GG + L+GL     TV
Sbjct: 224 SK--ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTV 281
Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPL+THRF   +K +E AFE + +
Sbjct: 282 PLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPL-EKALE-AFE-TFK 338
Query: 309 GGNAIKVMFN 318
            G  +K+M  
Sbjct: 339 KGLGLKIMLK 348

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score =  274 bits (700), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y Q  R  +F+VKKPMV+GHE +G + +VGS V+ L+ GDRVA++PG       
Sbjct: 43  CGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDE 102
Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct: 103 FCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHA 162
Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRRA V     V++ G+GPIGLV LLAA+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct: 163 CRRAGVTLGNKVLVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILEI 222
Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           S   E  +    K++  +GS  +V+ +C G + ++   + AT  GG + L+GL     +V
Sbjct: 223 SN--ESPEEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSV 280
Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPL+THRF   +K +E AFE S +
Sbjct: 281 PLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPL-EKALE-AFETSKK 338
Query: 309 GGNAIKVMFN 318
            G  +KVM  
Sbjct: 339 -GLGLKVMIK 347

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score =  270 bits (691), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 140/301 (46%), Positives = 191/301 (63%), Gaps = 4/301 (1%)
Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  +V Y +  R  NFIVKKP V+GHE +G +E+VGS VK L+ GDRVA+EPG    +  
Sbjct: 44  CGSDVHYWEYGRIGNFIVKKPXVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDE 103
Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
            CK G YNL P + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HA
Sbjct: 104 FCKXGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHA 163
Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           CRR  V     V++ G+GPIG VTLL A+A GA ++++TD+   RLS A+ +GAD   ++
Sbjct: 164 CRRGGVTLGHKVLVCGAGPIGXVTLLVAKAXGAAQVVVTDLSATRLSKAKEIGADLVLQI 223
Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
           S   E       K++  +G   +V+ +C G + ++   + ATR GG + L+GL     TV
Sbjct: 224 SK--ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEXTTV 281
Query: 249 ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ 308
            L  AA REVD+ G+FRY +TWP+ I  L S  ++VKPL+THRF   +K +E AFE   +
Sbjct: 282 PLLHAAIREVDIKGVFRYCNTWPVAISXLASKSVNVKPLVTHRFPL-EKALE-AFETFKK 339
Query: 309 G 309
           G
Sbjct: 340 G 340

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score =  195 bits (495), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 120/316 (37%), Positives = 176/316 (55%), Gaps = 8/316 (2%)
Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG 65
           T  C  +V + +       IV+   V+GHE AG +  V   VKS++VGDRVA+EP + C 
Sbjct: 50  TGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICN 109
Query: 66  HCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG 125
            C  C  G YN C  + F  +PP  G L   V HPA  C+K+  N+S E GAM EPLSV 
Sbjct: 110 ACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVA 168
Query: 126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 185
           +   +RA V     V+I G+GPIGL+T+L A+A GA  ++ITD+D  RL  A+ +   E 
Sbjct: 169 LAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEV 227
Query: 186 AKVSTDIEDVDTDVGKIQNAMGSGID--VSFDCVGFDKTMSTALNATRPGGKVCLIGLAK 243
                +    +    KI  + G GI+  V+ +C G + +++ A+ A + GGKV +IG+ K
Sbjct: 228 VTHKVERLSAEESAKKIVESFG-GIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGK 286
Query: 244 TEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAF 303
            E+ +    A+ REVD+   +RY +TWP  I  + +G +D+  L+THRF    ++   AF
Sbjct: 287 NEIQIPFMRASVREVDLQFQYRYCNTWPRAIRLVENGLVDLTRLVTHRFPL--EDALKAF 344
Query: 304 EISAQ-GGNAIKVMFN 318
           E ++     AIKV   
Sbjct: 345 ETASDPKTGAIKVQIQ 360

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score =  154 bits (388), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 13/318 (4%)
Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG 65
           T+ C  ++   +    A   +K P + GHE AG + E+G  V+ +EVGD V++E  I CG
Sbjct: 38  TSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCG 97
Query: 66  HCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG 125
            C  C+ G Y++C   + FG   T+G  A   V PA+  +K P ++  E   + EPL   
Sbjct: 98  KCYACRRGQYHVCQNTKIFGV-DTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNA 156
Query: 126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 185
           V       +  ++ V+I G+GP+GL+ +  A+A GA  +I+++    R  +A+ +GAD  
Sbjct: 157 VDTVLAGPISGKS-VLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYV 215
Query: 186 AKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE 245
             ++   EDV  +V  I +  G+G+DV  +  G  K +   L A  P G+V L+GL   +
Sbjct: 216 --INPFEEDVVKEVXDITD--GNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGK 271
Query: 246 MTVALTPAAA-REVDVIGIF--RYRSTWPLCIEFLRSGKIDVKPLITHRF-GFTQKEIED 301
           +T+        + + + GI       TW      L+SGK+++ P+ITH++ GF +   E+
Sbjct: 272 VTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDK--YEE 329
Query: 302 AFEISAQGGNAIKVMFNL 319
           AFE+  + G   KV+F L
Sbjct: 330 AFELX-RAGKTGKVVFXL 346

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score =  154 bits (388), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 13/318 (4%)
Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG 65
           T+ C  ++   +    A   +K P + GHE AG + E+G  V+ +EVGD V++E  I CG
Sbjct: 39  TSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCG 98
Query: 66  HCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG 125
            C  C+ G Y++C   + FG   T+G  A   V PA+  +K P ++  E   + EPL   
Sbjct: 99  KCYACRRGQYHVCQNTKIFGV-DTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNA 157
Query: 126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 185
           V       +  ++ V+I G+GP+GL+ +  A+A GA  +I+++    R  +A+ +GAD  
Sbjct: 158 VDTVLAGPISGKS-VLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYV 216
Query: 186 AKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE 245
             ++   EDV  +V  I +  G+G+DV  +  G  K +   L A  P G+V L+GL   +
Sbjct: 217 --INPFEEDVVKEVXDITD--GNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGK 272
Query: 246 MTVALTPAAA-REVDVIGIF--RYRSTWPLCIEFLRSGKIDVKPLITHRF-GFTQKEIED 301
           +T+        + + + GI       TW      L+SGK+++ P+ITH++ GF +   E+
Sbjct: 273 VTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDK--YEE 330
Query: 302 AFEISAQGGNAIKVMFNL 319
           AFE+  + G   KV+F L
Sbjct: 331 AFELX-RAGKTGKVVFXL 347

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 162/316 (51%), Gaps = 12/316 (3%)
Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG 65
           T+ C  ++   +    A   +K P ++GHE AG + EVG  V+ L+VGD +++E  I CG
Sbjct: 39  TSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHIVCG 98
Query: 66  HCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG 125
            C  CK   Y++C   + FG    +G  AH  + PAK  +K P ++  E  A+ EPL   
Sbjct: 99  KCYACKHNRYHVCQNTKIFGV-DMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEPLGNA 157
Query: 126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 185
           V       +   +  +I G+GP+GL+ +  A+A GA  +I+++    R  +A+ +GAD  
Sbjct: 158 VDTVLAGPIAGRST-LITGAGPLGLLGIAVAKASGAYPVIVSEPSEFRRKLAKKVGADYV 216
Query: 186 AKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE 245
             V+   ED    V  I +  G+G++V  +  G  K +   L A  PGG+V L+GL   E
Sbjct: 217 --VNPFEEDPVKFVMDITD--GAGVEVFLEFSGAPKALEQGLKAVTPGGRVSLLGLFPRE 272
Query: 246 MTV---ALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRF-GFTQKEIED 301
           +T+    L    A EV  I       TW      ++SGK+++ P+ITH++ GF +   E+
Sbjct: 273 VTIDFNNLIIFKALEVHGITGRHLWETWYTVSSLIQSGKLNLDPIITHKYKGFDK--FEE 330
Query: 302 AFEISAQGGNAIKVMF 317
           AFE+   G     V F
Sbjct: 331 AFELMRAGKTGKVVFF 346

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 149/296 (50%), Gaps = 13/296 (4%)
Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           ++ P+V GHE +G++E VG  V+  +VGD V+LE  I C  C  C+ G+Y++C   +  G
Sbjct: 55  IRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILG 114
Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGS 145
               +G  A  VV PA+  +  P ++  E  A+ EP    VH     +     +V+I G+
Sbjct: 115 V-DRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGA 173
Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
           GPIGL+  +  RA GA  I+++D +  RL+ AR         +  D+ +V      ++  
Sbjct: 174 GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEV------VRRV 227
Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALT-PAAAREVDVIGIF 264
            GSG++V  +  G +  +   L A  PGG+  ++G+    +   L      R +   GI 
Sbjct: 228 TGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIA 287
Query: 265 --RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFN 318
             R   TW      + SG++D+ PL+THR   ++    +AF + A  G A+KV+ +
Sbjct: 288 GRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSR--YREAFGLLAS-GQAVKVILD 340

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score =  127 bits (320), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 135/283 (47%), Gaps = 5/283 (1%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D+ +    F    P+ +GHE  GI+ E GS V+ +  G R+  +P ISCG C  C+AG  
Sbjct: 63  DRHLLHGEFPSTPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRV 122
Query: 76  NLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVG 135
           NLC  +R  G    +G  A  V+ P K  +++P  +    GA CEPL+  +H    + + 
Sbjct: 123 NLCRNLRAIGI-HRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIK 181
Query: 136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDV 195
             + V I+G G IGL+T+  AR  GA  +I++     +  +A  +GA  TA V     DV
Sbjct: 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA--TATVDPSAGDV 239
Query: 196 DTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTP--A 253
              +      +  G+DV  +C G  +T+  +    + GG V ++G+      V + P   
Sbjct: 240 VEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDI 299
Query: 254 AAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQ 296
             RE+ V+G F          + + +G I++   I+ R    +
Sbjct: 300 LFRELRVLGSFINPFVHRRAADLVATGAIEIDRXISRRISLDE 342

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 132/290 (45%), Gaps = 10/290 (3%)
Query: 17  QTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYN 76
              R  N   K P VIGHE  G+I+ VG  V+S  VG+RVA++P +SCGHC  C  G  N
Sbjct: 62  HIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPN 121
Query: 77  LCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGP 136
           +C  +   G    +G  +   V PAK  +K+P+ V+ +   M EP ++  +         
Sbjct: 122 VCTTLAVLGV-HADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTE 180
Query: 137 ETNVMIMGSGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDV 195
              V++ G+GPIGL  +   +  +    +I+ D   +RL  A+  GAD        I + 
Sbjct: 181 NDTVLVYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLEKAKESGADWA------INNS 234
Query: 196 DTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAA 255
            T +G+     G    +  D       +  A+    P  ++ L+G +     V       
Sbjct: 235 QTPLGESFAEKGIKPTLIIDAACHPSILKEAVTLASPAARIVLMGFSSEPSEVIQQGITG 294
Query: 256 REVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI 305
           +E+ +       + +P+ I++L  G I  + LITH F F  + + DA  +
Sbjct: 295 KELSIFSSRLNANKFPVVIDWLSKGLIKPEKLITHTFDF--QHVADAISL 342

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score =  124 bits (311), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 136/277 (49%), Gaps = 18/277 (6%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+ +GHE +G I+ VGS V  L  GD VA  P + C  C  C  G Y+ C +  F GS  
Sbjct: 54  PITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSR- 112
Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPI 148
            +G  A  +V   K  + LP ++ +E+GA  EP++VG+HA   A      NV+I+G+G I
Sbjct: 113 RDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTI 172
Query: 149 GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS 208
           GL+ +  A A GA  +   D+  ++L++A++ GA +T   S      +    ++Q+ +  
Sbjct: 173 GLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSS------EMSAPQMQSVLRE 226
Query: 209 --GIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEM---TVALTPAAAREVDVIGI 263
                +  +  G  +T+  A+    P  ++ L+G    ++   +        +E+ VIG 
Sbjct: 227 LRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGS 286
Query: 264 F-RYRSTWP-----LCIEFLRSGKIDVKPLITHRFGF 294
           +  Y S WP          L   K+ ++PLI HR  F
Sbjct: 287 WMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSF 323

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 122/270 (45%), Gaps = 19/270 (7%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI--SCGHCSLCKAGSYNLCPEMRFF 84
           K P++ GHE  GI+EEVG  V  L+VGDRV + P +  +CGHC  C +G   LC   +  
Sbjct: 54  KLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGI-PWLYSACGHCDYCLSGQETLCEHQKNA 112
Query: 85  GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMI 142
           G    +G  A      A    K+PDN+S EE A   C  ++    A +     P   V I
Sbjct: 113 GY-SVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT-YKALKVTGAKPGEWVAI 170
Query: 143 MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
            G G +G V +  A+A G   ++  D+  ++L +A+ LGAD        +  +  D  K 
Sbjct: 171 YGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLV------VNPLKEDAAKF 223
Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG 262
                 G+  +           +A N+ R GG   L+GL   EM + +       + +IG
Sbjct: 224 MKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG 283
Query: 263 -IFRYRSTWPLCIEFLRSGK----IDVKPL 287
            I   R      ++F   GK    I+V+PL
Sbjct: 284 SIVGTRKDLQEALQFAAEGKVKTIIEVQPL 313

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 139/279 (49%), Gaps = 10/279 (3%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGIS-CGHCSLCKAGS 74
           D  +   +F  K   V+GHE  GI++E+G++V SL+VGDRV++      CGHC  C +G+
Sbjct: 42  DLHVAAGDFGNKAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGN 101
Query: 75  YNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH-ACRRAN 133
              C E++  G    +G +A + +  A    K+PD +   E +      V  + A + + 
Sbjct: 102 ETFCREVKNAGY-SVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSG 160
Query: 134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 193
           V P    +I G+G +G + +  A+     ++I  D++  +L++A+ +GAD T   S D+ 
Sbjct: 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTIN-SGDVN 219
Query: 194 DVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPA 253
            VD ++ KI    G G+  +  C         A+ + +P GK+  + +  TEMT+++   
Sbjct: 220 PVD-EIKKITG--GLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSVPTV 276
Query: 254 AAREVDVIG-IFRYRSTWPLCIEFLRSGKIDVKPLITHR 291
               V+V G +   R       +F   GK  VKP++  R
Sbjct: 277 VFDGVEVAGSLVGTRLDLAEAFQFGAEGK--VKPIVATR 313

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 121/270 (44%), Gaps = 19/270 (7%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI--SCGHCSLCKAGSYNLCPEMRFF 84
           K P++ GHE  GI+EEVG  V  L+VGDRV + P +  +CGHC  C +G   LC   +  
Sbjct: 54  KLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGI-PWLYSACGHCDYCLSGQETLCEHQKNA 112
Query: 85  GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMI 142
           G    +G  A      A    K+PDN+S EE A   C  ++    A +     P   V I
Sbjct: 113 GY-SVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT-YKALKVTGAKPGEWVAI 170
Query: 143 MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
            G G  G V +  A+A G   ++  D+  ++L +A+ LGAD        +  +  D  K 
Sbjct: 171 YGIGGFGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLV------VNPLKEDAAKF 223
Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG 262
                 G+  +           +A N+ R GG   L+GL   EM + +       + +IG
Sbjct: 224 MKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG 283
Query: 263 -IFRYRSTWPLCIEFLRSGK----IDVKPL 287
            I   R      ++F   GK    I+V+PL
Sbjct: 284 SIVGTRKDLQEALQFAAEGKVKTIIEVQPL 313

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 138/279 (49%), Gaps = 10/279 (3%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGIS-CGHCSLCKAGS 74
           D  +   ++  K   V+GHE  GI++E+G++V SL+VGDRV++      CGHC  C +G+
Sbjct: 42  DLHVAAGDYGNKAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGN 101
Query: 75  YNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH-ACRRAN 133
              C E++  G    +G +A + +  A    K+PD +   E +      V  + A + + 
Sbjct: 102 ETFCREVKNAGY-SVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSG 160
Query: 134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 193
           V P    +I G+G +G + +  A+     ++I  D++  +L++A+ +GAD     S D+ 
Sbjct: 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVIIN-SGDVN 219
Query: 194 DVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPA 253
            VD ++ KI    G G+  +  C         A+ + +P GK+  + L  TEMT+++   
Sbjct: 220 PVD-EIKKITG--GLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVALPNTEMTLSVPTV 276
Query: 254 AAREVDVIG-IFRYRSTWPLCIEFLRSGKIDVKPLITHR 291
               V+V G +   R       +F   GK  VKP++  R
Sbjct: 277 VFDGVEVAGSLVGTRLDLAEAFQFGAEGK--VKPIVATR 313

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 133/314 (42%), Gaps = 42/314 (13%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR------ 82
           P ++GHE AGI+E VG  V  ++ GD V       C  C  CK+G  NLC ++R      
Sbjct: 63  PCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVG 122
Query: 83  -----------FFGSP-----PTNGSLAHKVVHPAKLCYKLP----DNVSLEEGAMCEPL 122
                        G P      T+    + VVH   +    P    D V L    +  P 
Sbjct: 123 IMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGV--PT 180
Query: 123 SVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
            +G      A V P +NV I G G +GL     A+  GA RII  D+D ++   A+  G 
Sbjct: 181 GLGA-VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV 239
Query: 183 DETAKVSTDIEDVDTDVGK-IQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLIG 240
           +E      + +D D  + + I +    G+D SF+C+G    M  AL     G G   ++G
Sbjct: 240 NEF----VNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 295
Query: 241 LAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFT 295
           +A +   ++  P         +    G F+ R+  P  +E   + +I V   ITH    T
Sbjct: 296 VAASGQEISTRPFQLVTGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHN--LT 353
Query: 296 QKEIEDAFEISAQG 309
             EI  AF++  +G
Sbjct: 354 LGEINKAFDLLHEG 367

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 140/315 (44%), Gaps = 43/315 (13%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+V+GHECAGI+E VG  V + + GD+V       C  C LC +   NLC ++R F  P 
Sbjct: 62  PVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPT 121
Query: 89  TNGSL-------------------------AHKVVHPAKLCYKLPDNVSLEEGAM--CEP 121
            +  L                          + VV  A L  ++ D  +LE   +  C  
Sbjct: 122 IDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL-ARVDDEANLERVCLIGCGF 180
Query: 122 LSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 181
            S    A   A V P +   + G G +GL  ++  +  GA RII  D++ ++   A+ LG
Sbjct: 181 SSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG 240
Query: 182 ADETA---KVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC- 237
           A +     ++   ++DV T++         G+D S DC G  +T+  A++ T  G   C 
Sbjct: 241 ATDCLNPRELDKPVQDVITEL------TAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCT 294
Query: 238 LIGLAKTEMTVALTPA-AAREVD--VIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGF 294
           ++G    EMT+        R ++    G ++   + P  +   ++ K D+  L+TH   F
Sbjct: 295 VVGAKVDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPF 354
Query: 295 TQKEIEDAFEISAQG 309
             + I DA ++  +G
Sbjct: 355 --ESINDAIDLMKEG 367

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 140/315 (44%), Gaps = 43/315 (13%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+V+GHECAGI+E VG  V + + GD+V       C  C LC +   NLC ++R F  P 
Sbjct: 62  PVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPT 121
Query: 89  TNGSL-------------------------AHKVVHPAKLCYKLPDNVSLEEGAM--CEP 121
            +  L                          + VV  A L  ++ D  +LE   +  C  
Sbjct: 122 IDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL-ARVDDEANLERVCLIGCGF 180
Query: 122 LSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 181
            S    A   A V P +   + G G +GL  ++  +  GA RII  D++ ++   A+ LG
Sbjct: 181 SSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG 240
Query: 182 ADETA---KVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC- 237
           A +     ++   ++DV T++         G+D S DC G  +T+  A++ T  G   C 
Sbjct: 241 ATDCLNPRELDKPVQDVITEL------TAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCT 294
Query: 238 LIGLAKTEMTVALTPA-AAREVD--VIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGF 294
           ++G    EMT+        R ++    G ++   + P  +   ++ K D+  L+TH   F
Sbjct: 295 VVGAKVDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPF 354
Query: 295 TQKEIEDAFEISAQG 309
             + I DA ++  +G
Sbjct: 355 --ESINDAIDLMKEG 367

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 126/267 (47%), Gaps = 10/267 (3%)
Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           VK P+ +GHE AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G
Sbjct: 60  VKLPVTLGHEIAGRIEEVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCDSPRWLG 119
Query: 86  SPPTNGSLAHKVVHP-AKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMG 144
               +G+ A  V+ P  K  YKL    ++E   +         A R+A++ P   ++++G
Sbjct: 120 I-NYDGAYAEYVLVPHYKYLYKLRRLSAVEAAPLTCSGVTTYRAVRKASLDPSKTLVVIG 178
Query: 145 S-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
           + G +G + +  A+A     II  DV  + L  A+  GAD     S+  +D  +++ +I 
Sbjct: 179 AGGGLGTMAIQIAKAVSGATIIGVDVREEALEAAKRAGADYVINASS--QDPVSEIRRIT 236
Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG- 262
              G G D   D    +KT+S         GK  ++GL   ++          EV  IG 
Sbjct: 237 Q--GKGADAVIDLNNSEKTLSIYPYVLAKQGKYVMVGLFGADLKYHAPLITLNEVQFIGS 294
Query: 263 IFRYRSTWPLCIEFLRSGKIDVKPLIT 289
           +   +S +   +    +GK  VKP++T
Sbjct: 295 LVGNQSDFLGIMSLAEAGK--VKPMVT 319

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 137/322 (42%), Gaps = 39/322 (12%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR------ 82
           P V+GHE AGI+E VG  V  ++ GD V       C  C  CK+G  NLC ++R      
Sbjct: 81  PCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVG 140
Query: 83  -----------FFGSP-----PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE---PLS 123
                        G P      T+    + VVH   +  K+     LE+  +     P  
Sbjct: 141 VMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA-KIDPVAPLEKVCLLGCGVPTG 199
Query: 124 VGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 183
           +G      A V P + V + G G +GL     A+A GA RII  D+D ++   A+N G  
Sbjct: 200 LGA-VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGVT 258
Query: 184 ETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLIGLA 242
           E        + +   +  + +    G+D SF+C+G    M +AL     G G   ++G+A
Sbjct: 259 EFINPKEHEQPIQQVIVDLTDG---GVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVA 315
Query: 243 KTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQK 297
            +   ++  P         +    G F+ RS  P  ++     +I V   ITH    T  
Sbjct: 316 ASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHN--MTLA 373
Query: 298 EIEDAFEISAQGGNAIKVMFNL 319
           +I  AF++    G+ ++V+ ++
Sbjct: 374 DINKAFDL-MHDGDCLRVVLDM 394

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 125/265 (47%), Gaps = 14/265 (5%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P V+G + +G+++ VG  V+    GD V + PG+SCG C  C AG  NLCP  +  G   
Sbjct: 58  PHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGE-H 116
Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP--LSVGVHACRRANVGPETNVMIMGSG 146
            +G+ A  VV P       P N+S EE A      L+       +  V P  +V++M +G
Sbjct: 117 RHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAG 176
Query: 147 P-IGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
             + +  +  A+ FGA R+I T     +L  A+ LGADET  V+    D   +V ++   
Sbjct: 177 SGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADET--VNYTHPDWPKEVRRLTG- 232
Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK-TEMTVALTPAAAREVDVIG-I 263
            G G D   D  G        + AT  GG++ + G +   E T+       R++ ++G  
Sbjct: 233 -GKGADKVVDHTG-ALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGST 290
Query: 264 FRYRSTWPLCIEFLRSGKIDVKPLI 288
              +S     + F+  GK+  KP++
Sbjct: 291 MASKSRLFPILRFVEEGKL--KPVV 313

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 131/312 (41%), Gaps = 22/312 (7%)
Query: 3   KAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI 62
           K   A    + ++   M  A +    P+ +GHE  G + E+G  V    VGD VA+    
Sbjct: 31  KVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPW 90
Query: 63  SCGHCSLCKAGSYNLCPEMRFFG-SPP---TNGSLA-HKVVHPAKLCYKLPDNVSLEEGA 117
            CG C  C  G  N C      G +PP   + GS+A + +V  A+    + D   +    
Sbjct: 91  GCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAP 150
Query: 118 MCEPLSVGVHACRRA--NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS 175
           + +      HA  R    +GP +  +++G G +G V +   RA  A R+I  D+D  RL+
Sbjct: 151 LTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLA 210
Query: 176 IARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK 235
           +AR +GAD   K      D   ++       G G    FD VG   T+ TA       G 
Sbjct: 211 LAREVGADAAVKSGAGAADAIREL-----TGGQGATAVFDFVGAQSTIDTAQQVVAVDGH 265
Query: 236 VCLIGL---AKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRF 292
           + ++G+   A  ++   + P  A  V     +  RS     +   R+G++D+     H  
Sbjct: 266 ISVVGIHAGAHAKVGFFMIPFGASVVTP--YWGTRSELMEVVALARAGRLDI-----HTE 318
Query: 293 GFTQKEIEDAFE 304
            FT  E   A+ 
Sbjct: 319 TFTLDEGPAAYR 330

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 140/317 (44%), Gaps = 45/317 (14%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+++GHE AGI+E +G  V +++ GD+V       C  C  C +   NLC ++    SP 
Sbjct: 65  PVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPA 124
Query: 89  TNGSL-------------------------AHKVVHPAKLCYKLPDNVSLEEGAMCE-PL 122
           ++  L                          + VV    L  K+ D+ +LE   +     
Sbjct: 125 SDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLA-KIDDDANLERVCLLGCGF 183
Query: 123 SVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG 181
           S G  A    A V P +   + G G +GL  ++  +A GA RII  D++ ++   A+ LG
Sbjct: 184 STGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALG 243
Query: 182 ADETAK---VSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC- 237
           A +      +   I++V  ++ K       G+D + DC G  +TM  AL+ T  G   C 
Sbjct: 244 ATDCLNPRDLHKPIQEVIIELTK------GGVDFALDCAGGSETMKAALDCTTAGWGSCT 297
Query: 238 LIGLAKTEMTVALTPAA---AREVD--VIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRF 292
            IG+A     + + P      R ++    G ++   + P  +   ++ K ++  L+TH  
Sbjct: 298 FIGVAAGSKGLTVFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTL 357
Query: 293 GFTQKEIEDAFEISAQG 309
            F +  I +AF++  QG
Sbjct: 358 PFDK--ISEAFDLMNQG 372

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 36/252 (14%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +R   + V  P V+GHE +GIIE +G  V  L+VGD V L  G  CG C+ C  G+ 
Sbjct: 47  DLIVRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGY-CGKCTQCNTGNP 105
Query: 76  NLCPEM--RFFGSPPTNGSLA-----------HKVVHPAKLCY---------KLPDNVSL 113
             C E   R F    + G+ A           H     +   Y         K+  +V +
Sbjct: 106 AYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPI 165
Query: 114 EEGAMCEPLSVGVH----ACRRA-NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD 168
           E   +  PL  G+     AC  A  V P ++ +  G+G +GL  LLAA+  GA  II  D
Sbjct: 166 E---LLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 222
Query: 169 VDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALN 228
           +   RL +A+ LGA  T  +++  +D    V  I+     G++ + +  G  + +   ++
Sbjct: 223 IVESRLELAKQLGA--THVINSKTQD---PVAAIKEITDGGVNFALESTGSPEILKQGVD 277
Query: 229 ATRPGGKVCLIG 240
           A    GK+ ++G
Sbjct: 278 ALGILGKIAVVG 289

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 142/333 (42%), Gaps = 36/333 (10%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG C +CK    
Sbjct: 49  DDQVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEG 108
Query: 76  NLCPEMRFFGSPPT----------NGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL-- 122
           N C +        T           G   H  +  +    Y + D +S+ +     PL  
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 123 --------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR 173
                   S G   A + A V   +   + G G +GL  ++  +A GA RII  D++  R
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDR 228
Query: 174 LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRP 232
            + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM TAL+  + 
Sbjct: 229 FAKAKEVGATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 284
Query: 233 G-GKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKP 286
             G   ++G+      +++ P         +  + G F+ + + P  +    + K  + P
Sbjct: 285 AYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDP 344
Query: 287 LITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           LITH   F  ++I + F++  + G +I+ +   
Sbjct: 345 LITHVLPF--EKINEGFDL-LRSGESIRTILTF 374

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 145/334 (43%), Gaps = 38/334 (11%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D+ +   N +   P+++GHE AGI+E VG  V +++ GD+V       CG C +CK    
Sbjct: 49  DEHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPES 108
Query: 76  NLCPEMRFFGSP-----------PTNGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL- 122
           N C +    G+P             +G   H  V  +    Y + D  ++ +     PL 
Sbjct: 109 NYCLKNDL-GNPRGTLQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLE 167
Query: 123 ---------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ 172
                    S G   A + A V P +   + G G +GL  ++  +A GA RII  D++  
Sbjct: 168 KVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKD 227
Query: 173 RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVG-FDKTMSTALNAT 230
           + + A+ LGA E      + +D    + ++   M   G+D SF+ +G  D  M++ L   
Sbjct: 228 KFAKAKELGATE----CINPQDYKKPIQEVLKEMTDGGVDFSFEVIGQLDTMMASLLCCH 283
Query: 231 RPGGKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVK 285
              G   ++G+      +++ P         +  + G F+ + + P  +    + K  + 
Sbjct: 284 EACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLD 343
Query: 286 PLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
            LIT+   F  ++I + F++  + G +I+ +   
Sbjct: 344 ALITNVLPF--EKINEGFDL-LRSGKSIRTVLTF 374

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 39/334 (11%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG CS+CK    
Sbjct: 49  DDHVVSGTLVAPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEG 108
Query: 76  NLCPEMRFFGSP-----------PTNGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL- 122
           NLC  ++    P              G   H  +  +    Y + D +S+ +     PL 
Sbjct: 109 NLC--LKNLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLE 166
Query: 123 ---------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ 172
                    S G   A + A V   +   + G G +GL  ++  +A GA RII  D++  
Sbjct: 167 KVCLVGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD 226
Query: 173 RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATR 231
           + + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM  AL+  +
Sbjct: 227 KFAKAKEVGATEC----VNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQ 282
Query: 232 PG-GKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVK 285
              G   ++G+      +++ P         +  + G F+ + + P  +    + K  + 
Sbjct: 283 EAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALD 342
Query: 286 PLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           PLITH   F  ++I + F++  + G +I+ +   
Sbjct: 343 PLITHVLPF--EKINEGFDL-LRSGKSIRTILTF 373

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 39/334 (11%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG CS+CK    
Sbjct: 49  DDHVVSGTLVAPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEG 108
Query: 76  NLCPEMRFFGSP-----------PTNGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL- 122
           NLC  ++    P              G   H  +  +    Y + D +S+ +     PL 
Sbjct: 109 NLC--LKNLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLE 166
Query: 123 ---------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ 172
                    S G   A + A V   +   + G G +GL  ++  +A GA RII  D++  
Sbjct: 167 KVCLVGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD 226
Query: 173 RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATR 231
           + + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM  AL+  +
Sbjct: 227 KFAKAKEVGATEC----VNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQ 282
Query: 232 PG-GKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVK 285
              G   ++G+      +++ P         +  + G F+ + + P  +    + K  + 
Sbjct: 283 EAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALD 342
Query: 286 PLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           PLITH   F  ++I + F++  + G +I+ +   
Sbjct: 343 PLITHVLPF--EKINEGFDL-LRSGKSIRTILTF 373

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 142/333 (42%), Gaps = 36/333 (10%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG C +CK    
Sbjct: 49  DDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEG 108
Query: 76  NLCPEMRFFGSPPT----------NGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL-- 122
           N C +        T           G   H  +  +    Y + D +S+ +     PL  
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 123 --------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR 173
                   S G   A + A V   +   + G G +GL  ++  +A GA RII  D++  +
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 174 LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRP 232
            + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM TAL+  + 
Sbjct: 229 FAKAKEVGATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 284
Query: 233 G-GKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKP 286
             G   ++G+      +++ P         +  + G F+ + + P  +    + K  + P
Sbjct: 285 AYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDP 344
Query: 287 LITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           LITH   F  ++I + F++  + G +I+ +   
Sbjct: 345 LITHVLPF--EKINEGFDL-LRSGESIRTILTF 374

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 139/331 (41%), Gaps = 37/331 (11%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +   N +   P+++GHE AGI+E VG  V +++ GD+V       CG C +CK    
Sbjct: 49  DDHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPES 108
Query: 76  NLCPEMRFFGSP-----------PTNGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL- 122
           N C +    G+P              G   H  +  +    Y + D  ++ +     PL 
Sbjct: 109 NYCLKNDL-GNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLE 167
Query: 123 ---------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ 172
                    S G   A   A V P +   + G G +GL  ++  +A GA RII  D++  
Sbjct: 168 KVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKD 227
Query: 173 RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVG-FDKTMSTALNAT 230
           + + A+ LGA E      + +D    + ++   M   G+D SF+ +G  D  M++ L   
Sbjct: 228 KFAKAKELGATE----CINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCH 283
Query: 231 RPGGKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVK 285
              G   ++G+      +++ P         +  V G F+ +   P  +    + K  + 
Sbjct: 284 EACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLD 343
Query: 286 PLITHRFGFTQKEIEDAFEISAQGGNAIKVM 316
            LITH   F  ++I + F++   G +   V+
Sbjct: 344 ALITHVLPF--EKINEGFDLLHSGKSICTVL 372

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 140/334 (41%), Gaps = 38/334 (11%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +   N +   P+++GHE AGI+E VG  V +++ GD+V       CG C +CK    
Sbjct: 49  DDHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPES 108
Query: 76  NLCPEMRFFGSP-----------PTNGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL- 122
           N C +    G+P              G   H  +  +    Y + D  ++ +     PL 
Sbjct: 109 NYCLKNDL-GNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLE 167
Query: 123 ---------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ 172
                    S G   A   A V P +   + G G +GL  ++  +A GA RII  D++  
Sbjct: 168 KVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKD 227
Query: 173 RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVG-FDKTMSTALNAT 230
           + + A+ LGA E      + +D    + ++   M   G+D SF+ +G  D  M++ L   
Sbjct: 228 KFAKAKELGATE----CINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCH 283
Query: 231 RPGGKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVK 285
              G   ++G+      +++ P         +  V G F+ +   P  +    + K  + 
Sbjct: 284 EACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLD 343
Query: 286 PLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
            LITH   F  ++I + F++    G +I+ +   
Sbjct: 344 ALITHVLPF--EKINEGFDL-LHSGKSIRTVLTF 374

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 140/334 (41%), Gaps = 38/334 (11%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +   N +   P+++GHE AGI+E VG  V +++ GD+V       CG C +CK    
Sbjct: 49  DDHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPES 108
Query: 76  NLCPEMRFFGSP-----------PTNGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL- 122
           N C +    G+P              G   H  +  +    Y + D  ++ +     PL 
Sbjct: 109 NYCLKNDL-GNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLE 167
Query: 123 ---------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ 172
                    S G   A   A V P +   + G G +GL  ++  +A GA RII  D++  
Sbjct: 168 KVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKD 227
Query: 173 RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVG-FDKTMSTALNAT 230
           + + A+ LGA E      + +D    + ++   M   G+D SF+ +G  D  M++ L   
Sbjct: 228 KFAKAKELGATE----CINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCH 283
Query: 231 RPGGKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVK 285
              G   ++G+      +++ P         +  V G F+ +   P  +    + K  + 
Sbjct: 284 EACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLD 343
Query: 286 PLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
            LITH   F  ++I + F++    G +I+ +   
Sbjct: 344 ALITHVLPF--EKINEGFDL-LHSGKSIRTVLTF 374

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 140/334 (41%), Gaps = 38/334 (11%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +   N +   P+++GHE AGI+E VG  V +++ GD+V       CG C +CK    
Sbjct: 49  DDHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPES 108
Query: 76  NLCPEMRFFGSP-----------PTNGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL- 122
           N C +    G+P              G   H  +  +    Y + D  ++ +     PL 
Sbjct: 109 NYCLKNDL-GNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLE 167
Query: 123 ---------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ 172
                    S G   A   A V P +   + G G +GL  ++  +A GA RII  D++  
Sbjct: 168 KVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKD 227
Query: 173 RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVG-FDKTMSTALNAT 230
           + + A+ LGA E      + +D    + ++   M   G+D SF+ +G  D  M++ L   
Sbjct: 228 KFAKAKELGATE----CINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCH 283
Query: 231 RPGGKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVK 285
              G   ++G+      +++ P         +  V G F+ +   P  +    + K  + 
Sbjct: 284 EACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLD 343
Query: 286 PLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
            LITH   F  ++I + F++    G +I+ +   
Sbjct: 344 ALITHVLPF--EKINEGFDL-LHSGKSIRTVLTF 374

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 142/333 (42%), Gaps = 36/333 (10%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG C +CK    
Sbjct: 49  DDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEG 108
Query: 76  NLCPEMRFFGSPPT----------NGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL-- 122
           N C +        T           G   H  +  +    Y + D +S+ +     PL  
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 123 --------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR 173
                   S G   A + A V   +   + G G +GL  ++  +A GA RII  D++  +
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 174 LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRP 232
            + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM TAL+  + 
Sbjct: 229 FAKAKEVGATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 284
Query: 233 G-GKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKP 286
             G   ++G+      +++ P         +  + G F+ + + P  +    + K  + P
Sbjct: 285 AYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDP 344
Query: 287 LITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           LITH   F  ++I + F++  + G +I+ +   
Sbjct: 345 LITHVLPF--EKINEGFDL-LRSGESIRTILTF 374

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 142/333 (42%), Gaps = 36/333 (10%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG C +CK    
Sbjct: 49  DDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEG 108
Query: 76  NLCPEMRFFGSPPT----------NGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL-- 122
           N C +        T           G   H  +  +    Y + D +S+ +     PL  
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 123 --------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR 173
                   S G   A + A V   +   + G G +GL  ++  +A GA RII  D++  +
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 174 LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRP 232
            + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM TAL+  + 
Sbjct: 229 FAKAKEVGATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 284
Query: 233 G-GKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKP 286
             G   ++G+      +++ P         +  + G F+ + + P  +    + K  + P
Sbjct: 285 AYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDP 344
Query: 287 LITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           LITH   F  ++I + F++  + G +I+ +   
Sbjct: 345 LITHVLPF--EKINEGFDL-LRSGESIRTILTF 374

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 143/333 (42%), Gaps = 36/333 (10%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG C +CK    
Sbjct: 49  DDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEG 108
Query: 76  NLCPEMRFFGSPPT----------NGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL-- 122
           N C +        T           G   H  +  +    Y + D +S+ +     PL  
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 123 --------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR 173
                   S G   A + A V   +   + G G +GL  ++  +A GA RII  D++  +
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 174 LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRP 232
            + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM TAL+  + 
Sbjct: 229 FAKAKEVGATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 284
Query: 233 G-GKVCLIGLAKTEMTVALTPA---AAREVD--VIGIFRYRSTWPLCIEFLRSGKIDVKP 286
             G   ++G+      +++ P    + R     + G F+ + + P  +    + K  + P
Sbjct: 285 AYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGCIFGGFKSKDSVPKLVADFMAKKFALDP 344
Query: 287 LITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           LITH   F  ++I + F++  + G +I+ +   
Sbjct: 345 LITHVLPF--EKINEGFDL-LRSGESIRTILTF 374

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 142/333 (42%), Gaps = 36/333 (10%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG C +CK    
Sbjct: 49  DDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEG 108
Query: 76  NLCPEMRFFGSPPT----------NGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL-- 122
           N C +        T           G   H  +  +    Y + D +S+ +     PL  
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 123 --------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR 173
                   S G   A + A V   +   + G G +GL  ++  +A GA RII  D++  +
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 174 LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRP 232
            + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM TAL+  + 
Sbjct: 229 FAKAKEVGATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 284
Query: 233 GGKVCLI-GLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKP 286
              V +I G+      +++ P         +  + G F+ + + P  +    + K  + P
Sbjct: 285 AYGVSVISGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDP 344
Query: 287 LITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           LITH   F  ++I + F++  + G +I+ +   
Sbjct: 345 LITHVLPF--EKINEGFDL-LRSGESIRTILTF 374

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 142/333 (42%), Gaps = 36/333 (10%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG C +CK    
Sbjct: 49  DDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEG 108
Query: 76  NLCPEMRFFGSPPT----------NGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL-- 122
           N C +        T           G   H  +  +    Y + D +S+ +     PL  
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 123 --------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR 173
                   S G   A + A V   +   + G G +GL  ++  +A GA RII  D++  +
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 174 LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRP 232
            + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM TAL+  + 
Sbjct: 229 FAKAKEVGATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 284
Query: 233 GGKVCLI-GLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKP 286
              V +I G+      +++ P         +  + G F+ + + P  +    + K  + P
Sbjct: 285 AYGVSVITGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDP 344
Query: 287 LITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           LITH   F  ++I + F++  + G +I+ +   
Sbjct: 345 LITHVLPF--EKINEGFDL-LRSGESIRTILTF 374

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 12/268 (4%)
Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           VK P+ +GHE AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G
Sbjct: 60  VKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLG 119
Query: 86  SPPTNGSLAHKVVHP-AKLCYKLPDNVSLEEGAM-CEPLSVGVHACRRANVGP-ETNVMI 142
               +G+ A  V+ P  K  YKL    ++E   + C  ++    A R+A++ P +T +++
Sbjct: 120 I-NFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT-YRAVRKASLDPTKTLLVV 177
Query: 143 MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
              G +G + +  A+A     II  DV  + +  A+  GAD    ++  ++D   ++ +I
Sbjct: 178 GAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV--INASMQDPLAEIRRI 235
Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG 262
             +   G+D   D    +KT+S    A    GK  ++GL   ++          E+  +G
Sbjct: 236 TES--KGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVG 293
Query: 263 -IFRYRSTWPLCIEFLRSGKIDVKPLIT 289
            +   +S +   +    +GK  VKP+IT
Sbjct: 294 SLVGNQSDFLGIMRLAEAGK--VKPMIT 319

>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From Thermotoga Maritima Length = 404

Iteration: 1
 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 16/170 (9%)
Query: 29  PMVIGHECAGIIEEVGSEV------KSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR 82
           P+ +GHE +G++ E G E       K  E+G+ V  E  + CGHC  C  G  N C  + 
Sbjct: 92  PVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEXLWCGHCRPCAEGFPNHCENLN 151
Query: 83  FFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEG-------AMCEPLSVGVHAC--RRAN 133
             G    +G+ A  V   AK  + L +   + EG       ++ EP SV  +A   R   
Sbjct: 152 ELGFN-VDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGG 210
Query: 134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 183
           + P  NV+I+G GPIGL  +   +  GA ++I+++    R ++A+ LGAD
Sbjct: 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD 260

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 141/333 (42%), Gaps = 36/333 (10%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG C +CK    
Sbjct: 49  DDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEG 108
Query: 76  NLCPEMRFFGSPPT----------NGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL-- 122
           N C +        T           G   H  +  +    Y + D +S+ +     PL  
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 123 --------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR 173
                   S G   A + A V   +   + G G  GL  ++  +A GA RII  D++  +
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 174 LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRP 232
            + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM TAL+  + 
Sbjct: 229 FAKAKEVGATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 284
Query: 233 G-GKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKP 286
             G   ++G+      +++ P         +  + G F+ + + P  +    + K  + P
Sbjct: 285 AYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDP 344
Query: 287 LITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           LITH   F  ++I + F++  + G +I+ +   
Sbjct: 345 LITHVLPF--EKINEGFDL-LRSGESIRTILTF 374

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 141/333 (42%), Gaps = 36/333 (10%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG C +CK    
Sbjct: 49  DDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEG 108
Query: 76  NLCPEMRFFGSPPT----------NGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL-- 122
           N C +        T           G   H  +  +    Y + D +S+ +     PL  
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 123 --------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR 173
                   S G   A + A V   +   + G G  GL  ++  +A GA RII  D++  +
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 174 LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRP 232
            + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM TAL+  + 
Sbjct: 229 FAKAKEVGATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 284
Query: 233 G-GKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKP 286
             G   ++G+      +++ P         +  + G F+ + + P  +    + K  + P
Sbjct: 285 AYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDP 344
Query: 287 LITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           LITH   F  ++I + F++  + G +I+ +   
Sbjct: 345 LITHVLPF--EKINEGFDL-LRSGESIRTILTF 374

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 136/315 (43%), Gaps = 36/315 (11%)
Query: 29  PMVIGHECAGIIEEVGSEVKSL-----EVGDRVALEPGISCGHCSLCKAGSY-NLCPEMR 82
           P+++GHE AG + EV  E + L     + GD +    GI+CG C  CK      LCP  +
Sbjct: 72  PIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRK 131
Query: 83  FFG-------SPPTNGSLA-HKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV 134
            +G        P   G  + H V+ P     K+ +   L+  AM   +  G  A    + 
Sbjct: 132 VYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLDVLAMA--MCSGATAYHAFDE 189
Query: 135 GPET----NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA-KVS 189
            PE+     V+I G+GP+GL  ++ AR+ GA  +I+      RL +A  +GAD T  +  
Sbjct: 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE 249
Query: 190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVA 249
           T +E+    +  I +  G G D   +  G  + +       R GG   + G+A  +  V 
Sbjct: 250 TSVEERRKAIMDITH--GRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPV- 306
Query: 250 LTPAAAREVDVIGIFRYRSTW-PLCIEFLRSGKID------VKPLITHRFGFTQKEIEDA 302
             P    E  V+    ++  W      F+++  I       +  LITHR     KE   A
Sbjct: 307 --PFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPL--KEANKA 362
Query: 303 FEISAQGGNAIKVMF 317
            E+  +   A+KV+ 
Sbjct: 363 LEL-MESREALKVIL 376

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 12/268 (4%)
Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           VK P+ +GHE AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G
Sbjct: 60  VKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLG 119
Query: 86  SPPTNGSLAHKVVHP-AKLCYKLPDNVSLEEGAM-CEPLSVGVHACRRANVGP-ETNVMI 142
               +G+ A  V+ P  K  YKL    ++E   + C  ++    A R+A++ P +T +++
Sbjct: 120 I-NFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT-YRAVRKASLDPTKTLLVV 177
Query: 143 MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
              G +G + +  A+A     II  DV  + +  A+  GAD    ++  ++D   ++ +I
Sbjct: 178 GAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV--INASMQDPLAEIRRI 235
Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG 262
             +   G+D   D    +KT+S    A    GK  ++GL   ++          E+  +G
Sbjct: 236 TES--KGVDAVIDLNYSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVG 293
Query: 263 -IFRYRSTWPLCIEFLRSGKIDVKPLIT 289
            +   +S +   +    +GK  VKP+IT
Sbjct: 294 SLVGNQSDFLGIMRLAEAGK--VKPMIT 319

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 141/333 (42%), Gaps = 36/333 (10%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG C +CK    
Sbjct: 49  DDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEG 108
Query: 76  NLCPEMRFFGSPPT----------NGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEPL-- 122
           N C +        T           G   H  +  +    Y + D +S+ +     PL  
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 123 --------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR 173
                   S G   A + A V   +   + G G +GL  ++  +A GA RII  D++  +
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 174 LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRP 232
            + A+ +GA E      + +D    + ++   M + G+D SF+ +G   TM TAL+  + 
Sbjct: 229 FAKAKEVGATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 284
Query: 233 G-GKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKP 286
             G   ++ +      +++ P         +  + G F+ + + P  +    + K  + P
Sbjct: 285 AYGVSVIVAVTPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDP 344
Query: 287 LITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL 319
           LITH   F  ++I + F++  + G +I+ +   
Sbjct: 345 LITHVLPF--EKINEGFDL-LRSGESIRTILTF 374

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 12/268 (4%)
Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           VK P+ +GHE AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G
Sbjct: 60  VKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPLQGEGNCYYCRIGEEHLCDSPRWLG 119
Query: 86  SPPTNGSLAHKVVHP-AKLCYKLPDNVSLEEGAM-CEPLSVGVHACRRANVGP-ETNVMI 142
               +G+ A  V+ P  K  YKL    ++E   + C  ++    A R+A++ P +T +++
Sbjct: 120 I-NFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT-YRAVRKASLDPTKTLLVV 177
Query: 143 MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
              G +G + +  A+A     II  DV  + +  A+  GAD    ++  ++D   ++ +I
Sbjct: 178 GAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV--INASMQDPLAEIRRI 235
Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG 262
             +   G+D   D    +KT+S    A    GK  ++GL   ++          E+  +G
Sbjct: 236 TES--KGVDAVIDLNYSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVG 293
Query: 263 -IFRYRSTWPLCIEFLRSGKIDVKPLIT 289
            +   +S +   +    +GK  VKP+IT
Sbjct: 294 SLVGNQSDFLGIMRLAEAGK--VKPMIT 319

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 112/259 (43%), Gaps = 13/259 (5%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI--SCGHCSLCKAGSYNLCPEMRFFGS 86
           P + GHE  G +  VGS VK ++ GDRV + P +  +CGHC  C  G   LC E    G 
Sbjct: 81  PFIPGHEGVGFVSAVGSGVKHVKEGDRVGI-PWLYTACGHCRHCLGGWETLCEEQLNTGY 139
Query: 87  PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG 144
              NG  A  VV        LP N+   E A  +C  ++V     +  +  P   V+I G
Sbjct: 140 -SVNGGFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVTV-YKGLKVTDTKPGDWVVISG 197
Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
            G +G + +  ARA G   +   D+D ++L +AR LGA  T    T + D    + K  +
Sbjct: 198 IGGLGHMAVQYARAMGL-NVAAVDIDDRKLDLARRLGATVTVNAKT-VADPAAYIRKETD 255
Query: 205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG-I 263
               G+ V+       K    AL     GG V L GL   +  +++       V V G I
Sbjct: 256 GGAQGVLVTAVS---PKAFEQALGMVARGGTVSLNGLPPGDFPLSIFNMVLNGVTVRGSI 312
Query: 264 FRYRSTWPLCIEFLRSGKI 282
              R      ++F   GK+
Sbjct: 313 VGTRLDLQESLDFAADGKV 331

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 105/239 (43%), Gaps = 14/239 (5%)
Query: 9   CMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS 68
           C  ++   Q M       K P  +GHE  G IEEV   V+ LE GD V L P ++ G C 
Sbjct: 54  CHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCL 113
Query: 69  LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS-VGVH 127
            C+AG    C  + F G    +G  A  +    +   KLP ++S E+     PL+  G+ 
Sbjct: 114 ACRAGEDMHCENLEFPGL-NIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGIT 172
Query: 128 ACRRAN-----VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
           A R        + P   V I+G G +G + +   +      +I  DV  ++L +A  LGA
Sbjct: 173 AYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA 232
Query: 183 DETAKVSTD-IEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG 240
           D       D ++ V      ++   G G++V+ D VG   T+          G++ ++G
Sbjct: 233 DHVVDARRDPVKQV------MELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVG 285

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 42/334 (12%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           D  +     +   P+++GHE AGI+E VG  V +++ GD+V       CG C +CK    
Sbjct: 49  DDHVVSGTMVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPES 108
Query: 76  NLCPEMRFFGSPPTNGSLA---------HKVVHPAKLCYKLPDNVSLEEGAMCE-----P 121
           N C  ++   S P  G+L           K +H             ++E A+ +     P
Sbjct: 109 NYC--LKNDVSNP-QGTLQDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASP 165
Query: 122 L----------SVGV-HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 170
           L          S G   A   A V P +   + G G +GL  ++  +A GA RII  D++
Sbjct: 166 LEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDIN 225
Query: 171 VQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVG-FDKTMSTALN 228
             + + A+ LGA E      + +D    + ++   M   G+D SF+ +G  D  M++ L 
Sbjct: 226 KDKFAKAKELGATE----CINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLC 281
Query: 229 ATRPGGKVCLIGLAKTEMTVALTP-----AAAREVDVIGIFRYRSTWPLCIEFLRSGKID 283
                G   ++G+      +++ P         +  ++G F+ +   P  +    + K  
Sbjct: 282 CHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFS 341
Query: 284 VKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF 317
           +  LITH   F  ++I + F++    G +I+ + 
Sbjct: 342 LDALITHVLPF--EKINEGFDL-LHSGKSIRTIL 372

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 118/266 (44%), Gaps = 17/266 (6%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI--SCGHCSLCKAGSYNLCPEMRFFGS 86
           P + GHE  G +  VGS V  ++ GDRV + P +  +CG+C  C  G   LC + +  G 
Sbjct: 58  PFIPGHEGVGYVSAVGSGVSRVKEGDRVGV-PWLYSACGYCEHCLQGWETLCEKQQNTGY 116
Query: 87  PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG 144
              NG     VV        LPD V   E A  +C  ++V     +  +  P   V+I G
Sbjct: 117 -SVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTV-YKGLKVTDTRPGQWVVISG 174
Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
            G +G V +  ARA G  R+   D+D  +L++AR LGA+    V+ +  D D     +Q 
Sbjct: 175 IGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAE----VAVNARDTDP-AAWLQK 228
Query: 205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG-I 263
            +G    V    V   K  S A+   R GG + L GL   +    +     + + + G I
Sbjct: 229 EIGGAHGVLVTAVS-PKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSI 287
Query: 264 FRYRSTWPLCIEFLRSGKIDVKPLIT 289
              RS     ++F   G  DVK  ++
Sbjct: 288 VGTRSDLQESLDFAAHG--DVKATVS 311

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 125/314 (39%), Gaps = 43/314 (13%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---G 85
           P+++GHE AGI+E VG  V  L+ GD V       CG C  C     NLC ++R     G
Sbjct: 61  PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 86  SPPTNGS--------LAHKVVHPAKLCYKLPDNVSLEEGAMCEPL----------SVGVH 127
             P   S        + H +       Y +  ++S+ +     PL          S G  
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 180
Query: 128 AC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA 186
           A    A + P +   + G G +GL  ++  +  GA RII  D++  + + A+  GA E  
Sbjct: 181 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE-- 238
Query: 187 KVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE 245
               + +D    + ++   M   G+D SF+C+G  K M  AL A   G            
Sbjct: 239 --CINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG----WGVSVVVG 292
Query: 246 MTVALTPAAAREVDVIGIFRYRST----W------PLCIEFLRSGKIDVKPLITHRFGFT 295
           +  +    A R   ++    ++ T    W      P  +    S KI V   +TH   F 
Sbjct: 293 VAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSF- 351
Query: 296 QKEIEDAFEISAQG 309
             EI  AFE+   G
Sbjct: 352 -DEINKAFELMHSG 364

>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 126/268 (47%), Gaps = 12/268 (4%)
Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           VK P+ +GHE AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G
Sbjct: 60  VKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLG 119
Query: 86  SPPTNGSLAHKVVHP-AKLCYKLPDNVSLEEGAM-CEPLSVGVHACRRANVGP-ETNVMI 142
               +G+ A  V+ P  K  YKL    ++E   + C  ++    A R+A++ P +T +++
Sbjct: 120 I-NFDGAYAEYVIVPHYKYXYKLRRLNAVEAAPLTCSGITT-YRAVRKASLDPTKTLLVV 177
Query: 143 MGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI 202
              G +G   +  A+A     II  DV  + +  A+  GAD    ++  ++D   ++ +I
Sbjct: 178 GAGGGLGTXAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV--INASMQDPLAEIRRI 235
Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIG 262
             +   G+D   D    +KT+S    A    GK   +GL   ++          E+  +G
Sbjct: 236 TES--KGVDAVIDLNNSEKTLSVYPKALAKQGKYVXVGLFGADLHYHAPLITLSEIQFVG 293
Query: 263 IFRYRSTWPLCIEFL-RSGKIDVKPLIT 289
                 +  L I  L  +GK  VKP IT
Sbjct: 294 SLVGNQSDFLGIXRLAEAGK--VKPXIT 319

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 125/314 (39%), Gaps = 43/314 (13%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---G 85
           P+++GHE AGI+E VG  V  L+ GD V       CG C  C     NLC ++R     G
Sbjct: 62  PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 86  SPPTNGS--------LAHKVVHPAKLCYKLPDNVSLEEGAMCEPL----------SVGVH 127
             P   S        + H +       Y +  ++S+ +     PL          S G  
Sbjct: 122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 181
Query: 128 AC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA 186
           A    A + P +   + G G +GL  ++  +  GA RII  D++  + + A+  GA E  
Sbjct: 182 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE-- 239
Query: 187 KVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE 245
               + +D    + ++   M   G+D SF+C+G  K M  AL A   G            
Sbjct: 240 --CINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG----WGVSVVVG 293
Query: 246 MTVALTPAAAREVDVIGIFRYRST----W------PLCIEFLRSGKIDVKPLITHRFGFT 295
           +  +    A R   ++    ++ T    W      P  +    S KI V   +TH   F 
Sbjct: 294 VAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSF- 352
Query: 296 QKEIEDAFEISAQG 309
             EI  AFE+   G
Sbjct: 353 -DEINKAFELMHSG 365

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 125/314 (39%), Gaps = 43/314 (13%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---G 85
           P+++GHE AGI+E VG  V  L+ GD V       CG C  C     NLC ++R     G
Sbjct: 62  PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 86  SPPTNGS--------LAHKVVHPAKLCYKLPDNVSLEEGAMCEPL----------SVGVH 127
             P   S        + H +       Y +  ++S+ +     PL          S G  
Sbjct: 122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 181
Query: 128 AC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA 186
           A    A + P +   + G G +GL  ++  +  GA RII  D++  + + A+  GA E  
Sbjct: 182 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE-- 239
Query: 187 KVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE 245
               + +D    + ++   M   G+D SF+C+G  K M  AL A   G            
Sbjct: 240 --CINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG----WGVSVVVG 293
Query: 246 MTVALTPAAAREVDVIGIFRYRST----W------PLCIEFLRSGKIDVKPLITHRFGFT 295
           +  +    A R   ++    ++ T    W      P  +    S KI V   +TH   F 
Sbjct: 294 VAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSF- 352
Query: 296 QKEIEDAFEISAQG 309
             EI  AFE+   G
Sbjct: 353 -DEINKAFELMHSG 365

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI--SCGHCSLCKAGSYNLCPEMRFFGS 86
           P + GHE  G +  VGS V  ++ GDRV + P +  +CG C  C  G   LC   +  G 
Sbjct: 62  PFIPGHEGVGYVAAVGSGVTRVKEGDRVGI-PWLYTACGCCEHCLTGWETLCESQQNTGY 120
Query: 87  PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG 144
              NG  A  V+        LP NV   E A  +C  ++V     ++ N  P   V I G
Sbjct: 121 -SVNGGYAEYVLADPNYVGILPKNVEFAEIAPILCAGVTV-YKGLKQTNARPGQWVAISG 178
Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET--AKVSTDIEDVDTDVGKI 202
            G +G V +  ARA G   +   D+D  +L +AR LGA  T  A+    +E +  D+G  
Sbjct: 179 IGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGA 237
Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL 241
              + + +         +     A+   R GG + L+GL
Sbjct: 238 HGVLVTAVS--------NSAFGQAIGMARRGGTIALVGL 268

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 124/314 (39%), Gaps = 43/314 (13%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---G 85
           P+++GH  AGI+E VG  V  L+ GD V       CG C  C     NLC ++R     G
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 86  SPPTNGS--------LAHKVVHPAKLCYKLPDNVSLEEGAMCEPL----------SVGVH 127
             P   S        + H +       Y +  ++S+ +     PL          S G  
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 180
Query: 128 AC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA 186
           A    A + P +   + G G +GL  ++  +  GA RII  D++  + + A+  GA E  
Sbjct: 181 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE-- 238
Query: 187 KVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE 245
               + +D    + ++   M   G+D SF+C+G  K M  AL A   G            
Sbjct: 239 --CINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG----WGVSVVVG 292
Query: 246 MTVALTPAAAREVDVIGIFRYRST----W------PLCIEFLRSGKIDVKPLITHRFGFT 295
           +  +    A R   ++    ++ T    W      P  +    S KI V   +TH   F 
Sbjct: 293 VAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSF- 351
Query: 296 QKEIEDAFEISAQG 309
             EI  AFE+   G
Sbjct: 352 -DEINKAFELMHSG 364

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 122/311 (39%), Gaps = 38/311 (12%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE-------- 80
           P+V+GHE AGI+E VG  V   + G++V       CG C  C++   N C +        
Sbjct: 63  PVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPD 122
Query: 81  ----------------MRFFGSPPTNGSLAHKVVHPAKLCYKLP-DNVSLEEGAMCEPLS 123
                           ++F G+   +       +  AK+    P D V L    +     
Sbjct: 123 VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFG 182
Query: 124 VGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 183
             V+    A V P +   + G G +GL  ++   + GA RII  D++  +   A+  GA 
Sbjct: 183 AAVNT---AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 239
Query: 184 ETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLIGLA 242
           +    +   E +   + K+ N    G+D S +CVG    M  AL +   G G   L+G  
Sbjct: 240 DFVNPNDHSEPISQVLSKMTNG---GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT 296
Query: 243 KTE----MTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKE 298
                    + L      +  + G F+ +   P  ++     K+ +   ITHR     + 
Sbjct: 297 DLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPL--ES 354
Query: 299 IEDAFEISAQG 309
           + DA ++   G
Sbjct: 355 VNDAIDLMKHG 365

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 130/319 (40%), Gaps = 35/319 (10%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
           K P+++GHE  G++E +G+ V  ++ GD+V       CG C  CK+ + N C +      
Sbjct: 61  KFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK 120
Query: 87  PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG-------VHAC---------- 129
                 +  +     K  Y L    +  E  +   ++V        + +C          
Sbjct: 121 TGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLESCLIGCGFATGY 180
Query: 130 ----RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 185
                 A V P +   + G G +G   ++  +A GA RII       +   A  LGA E 
Sbjct: 181 GAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE- 239
Query: 186 AKVSTDIEDVDTDVGK-IQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLIGLAK 243
                + +D D  + + I      G+D + +C G  +TM  AL +T  G G   ++GLA 
Sbjct: 240 ---CLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLAS 296
Query: 244 -----TEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKE 298
                    + L    + +  V G F+      L  ++++  KI+V  L++ +   T  +
Sbjct: 297 PNERLPLDPLLLLTGRSLKGSVFGGFKGEEVSRLVDDYMKK-KINVNFLVSTK--LTLDQ 353
Query: 299 IEDAFEISAQGGNAIKVMF 317
           I  AFE+ + G     +M 
Sbjct: 354 INKAFELLSSGQGVRSIMI 372

>pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase Length = 398

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 117/259 (45%), Gaps = 39/259 (15%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           DQ +    FIV K  V+GHE  G + E GS+V+ +++GD V++   ++CG C  CK    
Sbjct: 48  DQHIYRGRFIVPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARS 107
Query: 76  NLC------PEMRF----FGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEG-----AM 118
           ++C      P+       F     +G  A  V+ P    +  K  D     E       +
Sbjct: 108 DVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLI 167
Query: 119 CEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 178
            + L  G H C  A V P ++V I G+GP+G      AR  GA  +I+ D + +RL +  
Sbjct: 168 SDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227
Query: 179 NLGADE-TAKVSTDIED-VDTDVGKIQNAMGSGIDVSFDCVGFD----------KTMSTA 226
           + G +    + S  + D +D  +GK +      +D   D VGF+          +T + A
Sbjct: 228 DAGFETIDLRNSAPLRDQIDQILGKPE------VDCGVDAVGFEAHGLGDEANTETPNGA 281
Query: 227 LNA----TRPGGKVCLIGL 241
           LN+     R GG + + G+
Sbjct: 282 LNSLFDVVRAGGAIGIPGI 300

>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase Length = 398

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 125/273 (45%), Gaps = 41/273 (15%)
Query: 16  DQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY 75
           DQ M       +  +V+GHE  G + E G +V++L++GD V++   ++CG C  CK    
Sbjct: 49  DQHMVRGRTTAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHT 108
Query: 76  NLCPEM---RFFGS-------PPTNGSLAHKVVHPAKL-CYKLPDNVSLEEGA-----MC 119
            +C  +   R  G+         T G   + +V  A     KLPD     E       + 
Sbjct: 109 GVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLS 168
Query: 120 EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN 179
           + L  G H    A VGP + V + G+GP+GL    +AR  GA  +I+ D++  RL+ A+ 
Sbjct: 169 DILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA 228
Query: 180 LGADETAKVSTDI---EDVDTDVGKIQNAMGSGIDVSFDCVGFD-----------KTMST 225
            G  E A +S D    E +   +G+ +      +D + D VGF+           +  +T
Sbjct: 229 QGF-EIADLSLDTPLHEQIAALLGEPE------VDCAVDAVGFEARGHGHEGAKHEAPAT 281
Query: 226 ALNA----TRPGGKVCLIGLAKTEMTVALTPAA 254
            LN+    TR  GK+ + GL  TE   A+  AA
Sbjct: 282 VLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAA 314

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 136/327 (41%), Gaps = 37/327 (11%)
Query: 22  ANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM 81
              + K P+++GHE  GI+E +G  V +++ GD+V       C  C+ C+    NLC   
Sbjct: 55  GTMVSKFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRS 114
Query: 82  RFFGSP---------PTNGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEP---------- 121
              G              G   H  ++ +    Y + D  S+ +     P          
Sbjct: 115 DITGRGVLADGTTRFTCKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCG 174
Query: 122 LSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL 180
            S G  A  +   V P +  ++ G G +GL  ++  ++ GA RII  D++  +   A  +
Sbjct: 175 FSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 234
Query: 181 GADETAKVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPG-GKVCL 238
           GA E        +D    + ++ + M G+ +  +F+ +G  +TM  AL +     G   +
Sbjct: 235 GATE----CISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVV 290
Query: 239 IGLAKTEMTVALTPA---AAREVD--VIGIFRYRSTWP-LCIEFLRSGKIDVKPLITHRF 292
           +G+  +   +   P      R     V G  + R   P L  EFL + K D+  LITH  
Sbjct: 291 VGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFL-AKKFDLDQLITHVL 349
Query: 293 GFTQKEIEDAFEISAQGGNAIKVMFNL 319
            F  K+I + FE+    G +I+ +   
Sbjct: 350 PF--KKISEGFEL-LNSGQSIRTVLTF 373

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 136/327 (41%), Gaps = 37/327 (11%)
Query: 22  ANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM 81
              + K P+++GHE  GI+E +G  V +++ GD+V       C  C+ C+    NLC   
Sbjct: 55  GTMVSKFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRS 114
Query: 82  RFFGSP---------PTNGSLAHKVVHPAKLC-YKLPDNVSLEEGAMCEP---------- 121
              G              G   H  ++ +    Y + D  S+ +     P          
Sbjct: 115 DITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCG 174
Query: 122 LSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL 180
            S G  A  +   V P +  ++ G G +GL  ++  ++ GA RII  D++  +   A  +
Sbjct: 175 FSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 234
Query: 181 GADETAKVSTDIEDVDTDVGKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPG-GKVCL 238
           GA E        +D    + ++ + M G+ +  +F+ +G  +TM  AL +     G   +
Sbjct: 235 GATE----CISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVV 290
Query: 239 IGLAKTEMTVALTPA---AAREVD--VIGIFRYRSTWP-LCIEFLRSGKIDVKPLITHRF 292
           +G+  +   +   P      R     V G  + R   P L  EFL + K D+  LITH  
Sbjct: 291 VGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFL-AKKFDLDQLITHVL 349
Query: 293 GFTQKEIEDAFEISAQGGNAIKVMFNL 319
            F  K+I + FE+    G +I+ +   
Sbjct: 350 PF--KKISEGFEL-LNSGQSIRTVLTF 373

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 123/314 (39%), Gaps = 74/314 (23%)
Query: 30  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM-------- 81
           M++GHE  G + EVGSEVK  + GDRV +         S  + G +     M        
Sbjct: 55  MILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSN 114
Query: 82  -------RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRAN 133
                   FF     + +LAH           LP  + LE   M  + ++ G H    A+
Sbjct: 115 VKDGVFGEFFHVNDADMNLAH-----------LPKEIPLEAAVMIPDMMTTGFHGAELAD 163
Query: 134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 193
           +     V ++G GP+GL+ +  A+  GA RII        +  A+  GA       TDI 
Sbjct: 164 IELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGA-------TDI- 215
Query: 194 DVDTDVGKIQNAM-----GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI--------- 239
            V+   G I++ +     G G+D +    G    M+TA+   +PGG +  +         
Sbjct: 216 -VNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVL 274
Query: 240 ---------GLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITH 290
                    G+A   +   L P            R R    + + F +  ++D   L+TH
Sbjct: 275 DVPRLEWGCGMAHKTIKGGLCPGG----------RLRMERLIDLVFYK--RVDPSKLVTH 322
Query: 291 RF-GFTQKEIEDAF 303
            F GF    IE AF
Sbjct: 323 VFRGFDN--IEKAF 334

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 123/314 (39%), Gaps = 74/314 (23%)
Query: 30  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM-------- 81
           M++GHE  G + EVGSEVK  + GDRV +         S  + G +     M        
Sbjct: 55  MILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSN 114
Query: 82  -------RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRAN 133
                   FF     + +LAH           LP  + LE   M  + ++ G H    A+
Sbjct: 115 VKDGVFGEFFHVNDADMNLAH-----------LPKEIPLEAAVMIPDMMTTGFHGAELAD 163
Query: 134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 193
           +     V ++G GP+GL+ +  A+  GA RII        +  A+  GA       TDI 
Sbjct: 164 IELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGA-------TDI- 215
Query: 194 DVDTDVGKIQNAM-----GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI--------- 239
            V+   G I++ +     G G+D +    G    M+TA+   +PGG +  +         
Sbjct: 216 -VNYKDGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVL 274
Query: 240 ---------GLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITH 290
                    G+A   +   L P            R R    + + F +  ++D   L+TH
Sbjct: 275 PVPRLEWGCGMAHKTIKGGLCPGG----------RLRMERLIDLVFYK--RVDPSKLVTH 322
Query: 291 RF-GFTQKEIEDAF 303
            F GF    IE AF
Sbjct: 323 VFRGFDN--IEKAF 334

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 101/224 (45%), Gaps = 25/224 (11%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
           +K M++GHE  G + EVGSEVK  + GDRV + P  +    SL     +         G 
Sbjct: 52  RKNMILGHEAVGEVVEVGSEVKDFKPGDRVIV-PCTTPDWRSLEVQAGFQQHSNGMLAGW 110
Query: 87  PPTN------GSLAHKVVHPAKLCYK-LPDNVSLEEGAM-CEPLSVGVHACRRANVGPET 138
             +N      G   H  V+ A +    LP ++ LE   M  + ++ G H    A++    
Sbjct: 111 KFSNFKDGVFGEYFH--VNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIELGA 168
Query: 139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD 198
            V ++G GP+GL+ +  A+  GA RII        +  A+  GA       TDI  V+  
Sbjct: 169 TVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGA-------TDI--VNYK 219
Query: 199 VGKIQNAM-----GSGIDVSFDCVGFDKTMSTALNATRPGGKVC 237
            G I++ +     G G+D +    G    M+TA+   +PGG + 
Sbjct: 220 DGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPGGTIA 263

>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 121/302 (40%), Gaps = 44/302 (14%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
           +  M++GHE  G I +VGS VK L+VGD+V + P I+           Y +       G 
Sbjct: 52  RHDMILGHEAVGQIVKVGSLVKRLKVGDKVIV-PAITPDWGEEESQRGYPMHSGGMLGGW 110
Query: 87  PPTN--GSLAHKVVH----PAKLCYKLPDNVSLEEGAMCEPL-SVGVHACRRANVGPETN 139
             +N    +  +V H     A L   LP ++  E+  M   + + G H    AN+     
Sbjct: 111 KFSNFKDGVFSEVFHVNEADANLAL-LPRDIKPEDAVMLSDMVTTGFHGAELANIKLGDT 169
Query: 140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDV 199
           V ++G GP+GL+++  A   GA RI           IA   GA  T  ++    D+   +
Sbjct: 170 VCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA--TDIINYKNGDIVEQI 227
Query: 200 GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV------------------CLIGL 241
            K  +  G G+D      G   T + A+   +PG  +                    +G+
Sbjct: 228 LKATD--GKGVDKVVIAGGXVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGM 285
Query: 242 AKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIED 301
               +   LTP     ++ +               + +GK+D   LITHRF   +K +ED
Sbjct: 286 GHKHIHGGLTPGGRVRMEKLA------------SLISTGKLDTSKLITHRFEGLEK-VED 332
Query: 302 AF 303
           A 
Sbjct: 333 AL 334

>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 121/302 (40%), Gaps = 44/302 (14%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
           +  M++GHE  G I +VGS VK L+VGD+V + P I+           Y +       G 
Sbjct: 52  RHDMILGHEAVGQIVKVGSLVKRLKVGDKVIV-PAITPDWGEEESQRGYPMHSGGMLGGW 110
Query: 87  PPTN--GSLAHKVVH----PAKLCYKLPDNVSLEEGAMCEPL-SVGVHACRRANVGPETN 139
             +N    +  +V H     A L   LP ++  E+  M   + + G H    AN+     
Sbjct: 111 KFSNFKDGVFSEVFHVNEADANLAL-LPRDIKPEDAVMLSDMVTTGFHGAELANIKLGDT 169
Query: 140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDV 199
           V ++G GP+GL+++  A   GA RI           IA   GA  T  ++    D+   +
Sbjct: 170 VCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA--TDIINYKNGDIVEQI 227
Query: 200 GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV------------------CLIGL 241
            K  +  G G+D      G   T + A+   +PG  +                    +G+
Sbjct: 228 LKATD--GKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIPIPRSEWGVGM 285
Query: 242 AKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIED 301
               +   LTP     ++ +               + +GK+D   LITHRF   +K +ED
Sbjct: 286 GHKHIHGGLTPGGRVRMEKLA------------SLISTGKLDTSKLITHRFEGLEK-VED 332
Query: 302 AF 303
           A 
Sbjct: 333 AL 334

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 122/309 (39%), Gaps = 64/309 (20%)
Query: 30  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM-------- 81
           M++GHE  G + EVGSEVK  + GDRV +         S  + G +     M        
Sbjct: 55  MILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSN 114
Query: 82  -------RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRAN 133
                   FF     + +LAH           LP  + LE   M  + ++ G H    A+
Sbjct: 115 VKDGVFGEFFHVNDADMNLAH-----------LPKEIPLEAAVMIPDMMTTGFHGAELAD 163
Query: 134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 193
           +   ++V+++G G +GL+ +  A+  GA RII        +  A+  GA +         
Sbjct: 164 IQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG-- 221
Query: 194 DVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI-------------- 239
            +   V K+ N  G G+D      G  +T+S A++  +PGG +  I              
Sbjct: 222 HIVDQVMKLTN--GKGVDRVIMAGGGSETLSQAVSMVKPGGIISNINYHGSGDALLIPRV 279
Query: 240 ----GLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRF-GF 294
               G+A   +   L P            R R    + + F +  ++D   L+TH F GF
Sbjct: 280 EWGCGMAHKTIKGGLCPGG----------RLRMERLIDLVFYK--RVDPSKLVTHVFRGF 327
Query: 295 TQKEIEDAF 303
               IE AF
Sbjct: 328 DN--IEKAF 334

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
           +K M++GHE  G + EVGSEVK  + GDRV + P  +    SL     +         G 
Sbjct: 52  RKNMILGHEAVGEVVEVGSEVKDFKPGDRVIV-PCTTPDWRSLEVQAGFQQHSNGMLAGW 110
Query: 87  PPTN------GSLAHKVVHPAKLCYK-LPDNVSLEEGAM-CEPLSVGVHACRRANVGPET 138
             +N      G   H  V+ A +    LP ++ LE   M  + ++ G H    A++   +
Sbjct: 111 KFSNFKDGVFGEYFH--VNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIEMGS 168
Query: 139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST-DIEDVDT 197
           +V+++G G +GL+ +  A+  GA RII        +  A+  GA +        IED   
Sbjct: 169 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIED--- 225
Query: 198 DVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI 239
            V K+ N  G G+D      G  +T+S A+   +PGG +  I
Sbjct: 226 QVMKLTN--GKGVDRVIMAGGGSETLSQAVKMVKPGGIISNI 265

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 15/266 (5%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+++GHE AG I EVG E+  ++ GD V +        C  C+ G +N+C      G   
Sbjct: 60  PIILGHENAGTIVEVG-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTT 118
Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA----NVGPETNVMIMG 144
             G   + +V  ++   KL     +E   + +  +  + A R+A    +   E  V++ G
Sbjct: 119 NGGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNG 178
Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
            G + + T+   +A       IT V + R    R+   +  A   ++++D ++ + K+ +
Sbjct: 179 IGGLAVYTIQILKALMKN---ITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTD 235
Query: 205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIF 264
            +G+ I  + D VG ++T           G + L+G+    +++     A     ++G  
Sbjct: 236 GLGASI--AIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLG-S 292
Query: 265 RYRSTWPL--CIEFLRSGKIDVKPLI 288
            Y S   L   +    SGKI  KP I
Sbjct: 293 NYGSLNDLEDVVRLSESGKI--KPYI 316

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 121/309 (39%), Gaps = 64/309 (20%)
Query: 30  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM-------- 81
           M++GHE  G + EVGSEVK  + GDRV +         S  + G +     M        
Sbjct: 55  MILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSN 114
Query: 82  -------RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRAN 133
                   FF     + +LAH           LP  + LE   M  + ++ G H    A+
Sbjct: 115 VKDGVFGEFFHVNDADMNLAH-----------LPKEIPLEAAVMIPDMMTTGFHGAELAD 163
Query: 134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 193
           +   ++V+++G G +GL+ +  A+  GA RII        +  A+  GA +         
Sbjct: 164 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG-- 221
Query: 194 DVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI-------------- 239
            +   V K+ N  G G+D      G  +T+S A+   +PGG +  I              
Sbjct: 222 HIVDQVMKLTN--GKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRV 279
Query: 240 ----GLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRF-GF 294
               G+A   +   L P            R R    + + F +  ++D   L+TH F GF
Sbjct: 280 EWGCGMAHKTIKGGLCPGG----------RLRMERLIDLVFYK--RVDPSKLVTHVFRGF 327
Query: 295 TQKEIEDAF 303
               IE AF
Sbjct: 328 DN--IEKAF 334

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 15/221 (6%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
           +K M++GHE  G + EVGSEVK  + GDRV + P  +    SL     +         G 
Sbjct: 52  RKNMILGHEAVGEVVEVGSEVKDFKPGDRVIV-PCTTPDWRSLEVQAGFQQHSNGMLAGW 110
Query: 87  PPTN------GSLAHKVVHPAKLCYK-LPDNVSLEEGAM-CEPLSVGVHACRRANVGPET 138
             +N      G   H  V+ A +    LP ++ LE   M  + ++ G H    A++   +
Sbjct: 111 KFSNFKDGVFGEYFH--VNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIQMGS 168
Query: 139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD 198
           +V+++G G +GL+ +  A+  GA RII        +  A+  GA +          +   
Sbjct: 169 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG--HIVDQ 226
Query: 199 VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI 239
           V K+ N  G G+D      G  +T+S A++  +PGG +  I
Sbjct: 227 VMKLTN--GKGVDRVIMAGGGSETLSQAVSMVKPGGIISNI 265

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 19/240 (7%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEM------ 81
           P+V GHE  G + EVGS+VK + VGD+V +   + +C  C  C     N CP+M      
Sbjct: 71  PLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYAS 130
Query: 82  RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETN 139
            +     T G  ++ +V   +   + PDN+ L+ GA  +C  ++V           P  +
Sbjct: 131 IYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKH 190
Query: 140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDV 199
           + I+G G +G V +  A+AFG+   +I+    ++    +N GAD +  VS D E      
Sbjct: 191 IGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD-SFLVSRDQE------ 243
Query: 200 GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV-ALTPAAAREV 258
            ++Q A G+ +D   D V     +       +  GK+ L+G  +  + + A +  A R++
Sbjct: 244 -QMQAAAGT-LDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKI 301

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 31/229 (13%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRV----------ALE-----PGISCGHCSLCK 71
           +K M++GHE  G + EVGSEVK  + GDRV          +LE     P  S G  +  K
Sbjct: 52  RKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFPQHSNGMLAGWK 111
Query: 72  AGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM-CEPLSVGVHACR 130
             ++       +F     + +LA            LP ++ LE   M  + ++ G H   
Sbjct: 112 FSNFKDGVFGEYFHVNDADMNLA-----------ILPKDMPLENAVMITDMMTTGFHGAE 160
Query: 131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 190
            A++   ++V+++G G +GL+ +  A+  GA RII        +  A+  GA +      
Sbjct: 161 LADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKN 220
Query: 191 DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI 239
               +   V K+ N  G G+D      G  +T+S A++  +PGG +  I
Sbjct: 221 G--HIVDQVMKLTN--GKGVDRVIMAGGGSETLSQAVSMVKPGGIISNI 265

>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 117/300 (39%), Gaps = 46/300 (15%)
Query: 30  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM-------- 81
           M++GHE  G + EVGSEVK  + GDRV +         S  + G +     M        
Sbjct: 55  MILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSN 114
Query: 82  -------RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRAN 133
                   FF     + +LAH           LP  + LE   M  + ++ G H    AN
Sbjct: 115 VKDGVFGEFFHVNDADMNLAH-----------LPKEIPLEAAVMIPDMMTTGFHGAELAN 163
Query: 134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE 193
           +     V ++G GP+GL+++  A   GA RI           IA   GA  T  ++    
Sbjct: 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA--TDIINYKNG 221
Query: 194 DVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG---GKVCLIG------LAKT 244
           D+   + K  +  G G+D      G   T + A+   +PG   G V  +G      + ++
Sbjct: 222 DIVEQILKATD--GKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRS 279
Query: 245 EMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRF-GFTQKEIEDAF 303
           E  V +           G    R      I+ +   ++D   L+TH F GF    IE AF
Sbjct: 280 EWGVGMGHKHIHGGLCPG---GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDN--IEKAF 334

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 38/219 (17%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+V+G E A ++EEVG  V    VG+RV          C+                   P
Sbjct: 61  PIVVGFEAAAVVEEVGPGVTDFTVGERV----------CTCL-----------------P 93
Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEE----GAMCEPLSVGVHACRRANVGPETNVMIM- 143
             G+ + + ++PA+   K+P ++ L++    G M + ++      +   V P   V+I  
Sbjct: 94  PLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHA 153
Query: 144 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
            +G +G + +  AR  GA  +I T    ++   AR LG   T   ST  +D    V +I 
Sbjct: 154 AAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHTINYST--QDFAEVVREIT 210
Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
              G G+DV +D +G D T+  +L+  RP G     G A
Sbjct: 211 G--GKGVDVVYDSIGKD-TLQKSLDCLRPRGMCAAYGHA 246

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 39/234 (16%)
Query: 12  NVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCK 71
           +  Y   +  A F+   P  +G E AG++E VG EV   +VGDRVA              
Sbjct: 44  DTYYRSGLYPAPFL---PSGLGAEGAGVVEAVGDEVTRFKVGDRVA-------------- 86
Query: 72  AGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHAC 129
                       +G+ P  G+ +   V P     KL D+VS E+ A  M + L+V     
Sbjct: 87  ------------YGTGPL-GAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLR 133
Query: 130 RRANVGP-ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           +   V P E  +    +G +G +    A+A GA ++I T    ++ + A+ LGA ET   
Sbjct: 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDY 192
Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
           S   EDV   V ++ +  G    V +D VG D T  T+L++  P G V   G A
Sbjct: 193 SH--EDVAKRVLELTD--GKKCPVVYDGVGQD-TWLTSLDSVAPRGLVVSFGNA 241

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 39/170 (22%)
Query: 25  IVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF 84
           + K P V+G +  G++E VG+EV     GD V                          + 
Sbjct: 56  VSKAPRVLGFDAIGVVESVGNEVTMFNQGDIV-------------------------YYS 90
Query: 85  GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS-----------VGVHACRRAN 133
           GSP  NGS A   +   +L  K P N+S E+ A+  PL+            G+   R  N
Sbjct: 91  GSPDQNGSNAEYQLINERLVAKAPKNISAEQ-AVSLPLTGITAYETLFDVFGISRNRNEN 149
Query: 134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 183
            G +T ++I G+G +G +    A+A+G  R+I T    + +   + +GAD
Sbjct: 150 EG-KTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGAD 197

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 11/220 (5%)
Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEP-GISCGHCSLCKAGSYNLCPEMRFF 84
           VK P+V GHE AG++  +G  VK  ++GD   ++    SC  C  C+ G+ + CP     
Sbjct: 58  VKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLS 117
Query: 85  GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMI 142
           G    +GS        A     +P    L + A  +C  ++V   A + AN+     V I
Sbjct: 118 GY-THDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITV-YKALKSANLMAGHWVAI 175
Query: 143 MG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGK 201
            G +G +G + +  A+A G  R++  D    +  + R++G +    V  D       VG 
Sbjct: 176 SGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGE----VFIDFTKEKDIVGA 230
Query: 202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL 241
           +  A   G     +    +  +  +    R  G   L+G+
Sbjct: 231 VLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGM 270

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 33/237 (13%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEM------ 81
           PM+ GHE AGII+EVG  VK  ++GD V +   + SC  C  CK      C ++      
Sbjct: 59  PMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDC 118
Query: 82  --RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPE 137
              F  + P  G  ++ +V        +  N  LE+ A  +C  ++      + + V   
Sbjct: 119 LDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITT-YSPLKFSKVTKG 177
Query: 138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDT 197
           T V + G G +G + +  A A GA      +V V     ARN    + A +S  ++   T
Sbjct: 178 TKVGVAGFGGLGSMAVKYAVAMGA------EVSV----FARNEHKKQDA-LSMGVKHFYT 226
Query: 198 DVGKIQNAMG---SGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALT 251
           D  + +  +    S I   +D   + K ++         G + L+GL   E+   L+
Sbjct: 227 DPKQCKEELDFIISTIPTHYDLKDYLKLLTY-------NGDLALVGLPPVEVAPVLS 276

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 86/217 (39%), Gaps = 40/217 (18%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
           K P+V G EC+GI+E +G  VK  E+GDRV                 +YN   E+     
Sbjct: 59  KTPLVPGFECSGIVEALGDSVKGYEIGDRV-------------MAFVNYNAWAEV----- 100
Query: 87  PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGVHACRRANVGPETNVMIMG 144
                     V  P +  YK+PD++S  E A      ++  V     AN+    +V++  
Sbjct: 101 ----------VCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHS 150
Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD-VGKIQ 203
           +G  G+   +A      P + +          A     +      T + D + D V +++
Sbjct: 151 AGG-GVGQAVAQLCSTVPNVTV-------FGTASTFKHEAIKDSVTHLFDRNADYVQEVK 202
Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG 240
                G+D+  DC+  D T    L+  +P G   L G
Sbjct: 203 RISAEGVDIVLDCLCGDNT-GKGLSLLKPLGTYILYG 238

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 43/247 (17%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P   G + AG+IE VG    + + GDRV     IS G+     A  + +           
Sbjct: 88  PYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTV----------- 136
Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-S 145
                           YKLP+ +  ++GA    P      A    A V    +V++ G S
Sbjct: 137 ----------------YKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGAS 180
Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
           G +GL     ARA+G  +I+ T    +   I    GA E      ++  +D    KI+  
Sbjct: 181 GGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN-HREVNYID----KIKKY 234
Query: 206 MG-SGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTP--AAAREVDVIG 262
           +G  GID+  + +  +  +S  L+    GG+V ++G   +  T+ + P    A+E  +IG
Sbjct: 235 VGEKGIDIIIEMLA-NVNLSKDLSLLSHGGRVIVVG---SRGTIEINPRDTMAKESSIIG 290
Query: 263 IFRYRST 269
           +  + ST
Sbjct: 291 VTLFSST 297

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 115/277 (41%), Gaps = 26/277 (9%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRV--ALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
           P V   + +G++E VG  V     GDRV     PG   G     + G+          G+
Sbjct: 84  PFVPASDXSGVVEAVGKSVTRFRPGDRVISTFAPGWLDG----LRPGTGRTPAYETLGGA 139
Query: 87  PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM--CEPLSVGVHACRRANVGPETNVMIMG 144
            P  G L+  VV P       P ++   E +   C  L+       + ++     V++ G
Sbjct: 140 HP--GVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQG 197
Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD-VGKIQ 203
           +G + L  L  A+A GA  +I+T    ++L  A  LGAD        I  ++ D V ++ 
Sbjct: 198 TGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADH------GINRLEEDWVERVY 250
Query: 204 NAMGS-GIDVSFDCVGFDKTMSTALNATRPGGKVCLIG-LAKTEMTVALTPAAARE--VD 259
              G  G D   +  G    +  +L A  P G++ +IG L   E++  + P   +   V 
Sbjct: 251 ALTGDRGADHILEIAG-GAGLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQ 309
Query: 260 VIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQ 296
            I +   R+   L     R G   +KP+I  R+ FT+
Sbjct: 310 GISVGHRRALEDLVGAVDRLG---LKPVIDXRYKFTE 343

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 86/222 (38%), Gaps = 40/222 (18%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGS 86
           +KP V+G E +G +   G  V + EVGD+VA     +    S   +      P M     
Sbjct: 62  EKPYVLGREASGTVVAKGKGVTNFEVGDQVAYISNSTFAQYSKISSQG----PVM----- 112
Query: 87  PPTNGSLAHKVVHPAKLCYKLPDNVSLEE-----GAMCEPLSVGVHACRRANVGPETNVM 141
                              KLP   S EE       + + L+         +V     V+
Sbjct: 113 -------------------KLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVL 153
Query: 142 IMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVG 200
           +  + G +GL+     +  GA  I +   D ++L IA+  GA+     S   ED+   V 
Sbjct: 154 LFAAAGGVGLILNQLLKMKGAHTIAVASTD-EKLKIAKEYGAEYLINASK--EDILRQVL 210
Query: 201 KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
           K  N  G G+D SFD VG D T   +L A +  G     G A
Sbjct: 211 KFTN--GKGVDASFDSVGKD-TFEISLAALKRKGVFVSFGNA 249

>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From Streptomyces Coelicolor A3(2) Length = 456

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 92/230 (40%), Gaps = 31/230 (13%)
Query: 31  VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYN---LCPEMRFFGSP 87
           VIG + AG++   G  V + + GD V       C    L  +  +N   L PE R +G  
Sbjct: 120 VIGSDLAGVVLRTGPGVNAWQAGDEVVAH----CLSVELESSDGHNDTMLDPEQRIWGFE 175
Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR------ANVGPETNVM 141
              G LA   +  +      PD++S EE A   P  V   A R+      A +    NV+
Sbjct: 176 TNFGGLAEIALVKSNQLMPKPDHLSWEEAAA--PGLVNSTAYRQLVSRNGAGMKQGDNVL 233
Query: 142 IMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA----DETAKVSTDIEDVD 196
           I G SG +G      A A GA  I +     Q+  I R +GA    D  A+     +D +
Sbjct: 234 IWGASGGLGSYATQFALAGGANPICVVS-SPQKAEICRAMGAEAIIDRNAEGYRFWKDEN 292
Query: 197 TDVGKIQNAM---------GSGIDVSFDCVGFDKTMSTALNATRPGGKVC 237
           T   K              G  ID+ F+  G  +T   ++  TR GG + 
Sbjct: 293 TQDPKEWKRFGKRIRELTGGEDIDIVFEHPG-RETFGASVFVTRKGGTIT 341

>pdb|2B5V|A Chain A, Crystal Structure Of Glucose Dehydrogenase From Haloferax Mediterranei Length = 357

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 44/236 (18%)
Query: 30  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI----SCGHCSLCKAGSYNLCPEMRFF- 84
           +V+GHE  G++  V      LE GD V   P +    + G     +    ++ P+  +F 
Sbjct: 59  LVLGHEAVGVV--VDPNDTELEEGDIVV--PTVRRPPASGTNEYFERDQPDMAPDGMYFE 114
Query: 85  -GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSV------GVHACRRANVGPE 137
            G    +G ++     P K   ++P + + E G + EP+S+        +A R A     
Sbjct: 115 RGIVGAHGYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPISITEKALEHAYASRSAFDWDP 173
Query: 138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADETAKVSTDIEDVD 196
           ++  ++G+G +GL+TL   +        + D   + L  + R    D T  +   IE++D
Sbjct: 174 SSAFVLGNGSLGLLTLAMLK--------VDDKGYENLYCLGRRDRPDPTIDI---IEELD 222
Query: 197 T-----------DVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL 241
                       DV  +   M    D  ++  GF K    ++ A  P G   L+G+
Sbjct: 223 ATYVDSRQTPVEDVPDVYEQM----DFIYEATGFPKHAIQSVQALAPNGVGALLGV 274

>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form Length = 366

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 22/151 (14%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF--F 84
           K  +V+GHE  G++EE          GD V       CG C  C  G  + C    F   
Sbjct: 59  KDFLVLGHEAIGVVEE---SYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEA 115
Query: 85  GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS---------------VGVHAC 129
           G    +G +        K   K+P ++  + G + +PL+               V V  C
Sbjct: 116 GIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGILAQPLADIEKSIEEILEVQKRVPVWTC 174
Query: 130 RRANVGPETNVMIMGSGPIGLVTLLAARAFG 160
               +     V+++G+GPIG++  L  R +G
Sbjct: 175 DDGTLNCR-KVLVVGTGPIGVLFTLLFRTYG 204

>pdb|2B5W|A Chain A, Crystal Structure Of D38c Glucose Dehydrogenase Mutant From Haloferax Mediterranei Length = 357

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 30  MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI----SCGHCSLCKAGSYNLCPEMRFF- 84
           +V+GHE  G++  V      LE GD V   P +    + G     +    ++ P+  +F 
Sbjct: 59  LVLGHEAVGVV--VDPNDTELEEGDIVV--PTVRRPPASGTNEYFERDQPDMAPDGMYFE 114
Query: 85  -GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSV------GVHACRRANVGPE 137
            G    +G ++     P K   ++P + + E G + EP+S+        +A R A     
Sbjct: 115 RGIVGAHGYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPISITEKALEHAYASRSAFDWDP 173
Query: 138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADETAKV-----STD 191
           ++  ++G+G +GL+TL   +        + D   + L  + R    D T  +     +T 
Sbjct: 174 SSAFVLGNGSLGLLTLAMLK--------VDDKGYENLYCLGRRDRPDPTIDIIEELDATY 225
Query: 192 IEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL 241
           ++   T V  + +     +D  ++  GF K    ++ A  P G   L+G+
Sbjct: 226 VDSRQTPVEDVPDVY-EQMDFIYEATGFPKHAIQSVQALAPNGVGALLGV 274

>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex With Nadp And Glucose Length = 366

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 22/151 (14%)
Query: 27  KKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF--F 84
           K  +V+GHE  G++EE          GD V       CG C  C  G  + C    F   
Sbjct: 59  KDFLVLGHEAIGVVEE---SYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEA 115
Query: 85  GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS---------------VGVHAC 129
           G    +G +        K   K+P ++  + G + +PL+               V V  C
Sbjct: 116 GIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGILAQPLADIEKSIEEILEVQKRVPVWTC 174
Query: 130 RRANVGPETNVMIMGSGPIGLVTLLAARAFG 160
               +     V+++G+GPIG++  L  R +G
Sbjct: 175 DDGTLNCR-KVLVVGTGPIGVLFTLLFRTYG 204

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 69/169 (40%), Gaps = 17/169 (10%)
Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCPEMRFFGSP 87
           P V GHE  G +  VG +V+    GD V +   + SC HC  C+ G  N C  M    + 
Sbjct: 77  PCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNS 136
Query: 88  PTNGSLAHK--------VVHPAKLCYKLPDNVSLEEGAMCEPLSVG----VHACRRANVG 135
           PT     H         VVH     Y L      E+ A   PL           R    G
Sbjct: 137 PTPDEPGHTLGGYSQQIVVHER---YVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQAG 193
Query: 136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE 184
           P   V ++G G +G + +  A A GA  +  T  + +R   A+ LGADE
Sbjct: 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKALGADE 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	1e-146
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-144
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-142
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	1e-132
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-131
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	1e-129
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	1e-124
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	1e-106
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	1e-103
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-86
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	2e-75
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	1e-62
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	6e-60
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	1e-56
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	3e-54
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	1e-48
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	3e-48
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	4e-46
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	8e-46
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	2e-44
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	4e-44
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	2e-43
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	6e-43
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	2e-41
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	2e-40
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	8e-40
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-39
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	7e-37
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	3e-36
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	9e-36
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	2e-33
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	2e-30
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	9e-28
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	2e-26
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	6e-26
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	2e-25
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-25
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	4e-25
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	4e-25
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	5e-25
3gms_A	340	Putative NADPH:quinone reductase; structural genom	7e-25
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	8e-25
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	1e-24
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	2e-24
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-24
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	6e-24
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	9e-24
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	1e-23
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	1e-23
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	9e-23
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	1e-22
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	7e-22
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	3e-20
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	4e-20
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	1e-19
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	7e-19
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	8e-19
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	2e-18
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	4e-14
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	9e-14
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	1e-08
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	5e-08
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	4e-06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	4e-04
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	5e-04

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  415 bits (1068), Expect = e-146
 Identities = 138/299 (46%), Positives = 191/299 (63%), Gaps = 5/299 (1%)

Query: 20  RCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP 79
           R  NFIVKKPMV+GHE +G +E+VGS VK L+ GDRVA+EPG    +   CK G YNL P
Sbjct: 55  RIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSP 114

Query: 80  EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETN 139
            + F  +PP +G+L     H A  CYKLPDNV+ EEGA+ EPLSVG+HACRR  V     
Sbjct: 115 SIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHK 174

Query: 140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDV 199
           V++ G+GPIG+VTLL A+A GA ++++TD+   RLS A+ +GAD   ++S   E      
Sbjct: 175 VLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISK--ESPQEIA 232

Query: 200 GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVD 259
            K++  +G   +V+ +C G + ++   + ATR GG + L+GL     TV L  AA REVD
Sbjct: 233 RKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVD 292

Query: 260 VIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFN 318
           + G+FRY +TWP+ I  L S  ++VKPL+THRF    ++  +AFE   + G  +K+M  
Sbjct: 293 IKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPL--EKALEAFET-FKKGLGLKIMLK 348

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  409 bits (1054), Expect = e-144
 Identities = 145/305 (47%), Positives = 206/305 (67%), Gaps = 4/305 (1%)

Query: 15  YDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGS 74
           Y +  R A+FIVK PMVIGHE +G + +VG  VK L+ GDRVA+EPG+ C  C  CK G 
Sbjct: 47  YYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGK 106

Query: 75  YNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV 134
           YNLCP++ F  +PP +G+LA   VH A  C+KLPDNVSLEEGA+ EPLSVGVHACRRA V
Sbjct: 107 YNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGV 166

Query: 135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIED 194
              T V+++G+GPIGLV++LAA+A+GA  ++ T    +RL +A+N GAD T  V    E+
Sbjct: 167 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDPAKEE 225

Query: 195 VDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA 254
             + + +I++A+G   +V+ DC G +K ++  +N TR GG + L+G+    +TV L  A 
Sbjct: 226 ESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNAC 285

Query: 255 AREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG-GNAI 313
           ARE+D+  +FRY + +P+ +E + SG+ +VK L+TH F    ++  DAFE + +   N I
Sbjct: 286 AREIDIKSVFRYCNDYPIALEMVASGRCNVKQLVTHSFKL--EQTVDAFEAARKKADNTI 343

Query: 314 KVMFN 318
           KVM +
Sbjct: 344 KVMIS 348

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  405 bits (1044), Expect = e-142
 Identities = 111/303 (36%), Positives = 170/303 (56%), Gaps = 4/303 (1%)

Query: 15  YDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGS 74
           + +       IV+   V+GHE AG +  V   VKS++VGDRVA+EP + C  C  C  G 
Sbjct: 59  FWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGR 118

Query: 75  YNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV 134
           YN C  + F  +PP  G L   V HPA  C+K+ + +S E GAM EPLSV +   +RA V
Sbjct: 119 YNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLEPLSVALAGLQRAGV 177

Query: 135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIED 194
                V+I G+GPIGL+T+L A+A GA  ++ITD+D  RL  A+ +  +        +  
Sbjct: 178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSA 237

Query: 195 VDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA 254
            ++    +++  G    V+ +C G + +++ A+ A + GGKV +IG+ K E+ +    A+
Sbjct: 238 EESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRAS 297

Query: 255 AREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG-GNAI 313
            REVD+   +RY +TWP  I  + +G +D+  L+THRF    ++   AFE ++     AI
Sbjct: 298 VREVDLQFQYRYCNTWPRAIRLVENGLVDLTRLVTHRFPL--EDALKAFETASDPKTGAI 355

Query: 314 KVM 316
           KV 
Sbjct: 356 KVQ 358

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  378 bits (972), Expect = e-132
 Identities = 90/307 (29%), Positives = 148/307 (48%), Gaps = 13/307 (4%)

Query: 15  YDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGS 74
             +    A   ++ P+V GHE +G++E VG  V+  +VGD V+LE  I C  C  C+ G+
Sbjct: 44  IWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGN 103

Query: 75  YNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV 134
           Y++C   +  G    +G  A  VV PA+  +  P ++  E  A+ EP    VH     + 
Sbjct: 104 YHVCLNTQILGVDR-DGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSG 162

Query: 135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIED 194
               +V+I G+GPIGL+  +  RA GA  I+++D +  RL+ AR         +  D+ +
Sbjct: 163 VSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLE 222

Query: 195 VDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA 254
           V      ++   GSG++V  +  G +  +   L A  PGG+  ++G+    +   L    
Sbjct: 223 V------VRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGEL 276

Query: 255 -AREVDVIGIF--RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGN 311
             R +   GI   R   TW      + SG++D+ PL+THR         +AF +    G 
Sbjct: 277 VMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPL--SRYREAFGL-LASGQ 333

Query: 312 AIKVMFN 318
           A+KV+ +
Sbjct: 334 AVKVILD 340

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  376 bits (969), Expect = e-131
 Identities = 85/296 (28%), Positives = 138/296 (46%), Gaps = 8/296 (2%)

Query: 24  FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF 83
           F    P+ +GHE  GI+ E GS V+ +  G R+  +P ISCG C  C+AG  NLC  +R 
Sbjct: 71  FPSTPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRA 130

Query: 84  FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIM 143
            G    +G  A  V+ P K  +++P  +    GA CEPL+  +H    + +   + V I+
Sbjct: 131 IGIHR-DGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAGSTVAIL 189

Query: 144 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
           G G IGL+T+  AR  GA  +I++     +  +A  +GA  T  V     DV   +    
Sbjct: 190 GGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATAT--VDPSAGDVVEAIAGPV 247

Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAA--REVDVI 261
             +  G+DV  +C G  +T+  +    + GG V ++G+      V + P     RE+ V+
Sbjct: 248 GLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVL 307

Query: 262 GIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF 317
           G F          + + +G I++  +I+ R      E  D    +      +KV+ 
Sbjct: 308 GSFINPFVHRRAADLVATGAIEIDRMISRRISL--DEAPDVIS-NPAAAGEVKVLV 360

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  370 bits (953), Expect = e-129
 Identities = 85/305 (27%), Positives = 137/305 (44%), Gaps = 16/305 (5%)

Query: 22  ANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM 81
            N     P+ +GHE +G I+ VGS V  L  GD VA  P + C  C  C  G Y+ C + 
Sbjct: 47  KNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKY 106

Query: 82  RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVM 141
            F GS   +G  A  +V   K  + LP ++ +E+GA  EP++VG+HA   A      NV+
Sbjct: 107 DFIGSRR-DGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVI 165

Query: 142 IMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGK 201
           I+G+G IGL+ +  A A GA  +   D+  ++L++A++ GA +T   S            
Sbjct: 166 IIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE--MSAPQMQSV 223

Query: 202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAA---REV 258
           +         +  +  G  +T+  A+    P  ++ L+G    ++ +          +E+
Sbjct: 224 L--RELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKEL 281

Query: 259 DVIGIFRYRS------TWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNA 312
            VIG +   S       W      L   K+ ++PLI HR  F  +    A    A+    
Sbjct: 282 TVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSF--ESFAQAVRDIARNAMP 339

Query: 313 IKVMF 317
            KV+ 
Sbjct: 340 GKVLL 344

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  358 bits (922), Expect = e-124
 Identities = 97/303 (32%), Positives = 157/303 (51%), Gaps = 11/303 (3%)

Query: 20  RCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP 79
             A   +K P ++GHE AG + E+G  V+ +EVGD V++E  I CG C  C+ G Y++C 
Sbjct: 53  EWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQ 112

Query: 80  EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETN 139
             + FG    +G  A   V PA+  +K P ++  E   + EPL   V       +  ++ 
Sbjct: 113 NTKIFGVDT-DGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGKS- 170

Query: 140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDV 199
           V+I G+GP+GL+ +  A+A GA  +I+++    R  +A+ +GAD         EDV  +V
Sbjct: 171 VLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFE--EDVVKEV 228

Query: 200 GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA-AREV 258
             I    G+G+DV  +  G  K +   L A  P G+V L+GL   ++T+        + +
Sbjct: 229 MDI--TDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKAL 286

Query: 259 DVIGIFRYR--STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM 316
            + GI       TW      L+SGK+++ P+ITH++     + E+AFE+  + G   KV+
Sbjct: 287 TIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKY-KGFDKYEEAFEL-MRAGKTGKVV 344

Query: 317 FNL 319
           F L
Sbjct: 345 FML 347

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  313 bits (805), Expect = e-106
 Identities = 60/319 (18%), Positives = 110/319 (34%), Gaps = 38/319 (11%)

Query: 20  RCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG--ISCGHCSLCKAGSYNL 77
                  +  +V+GHE  G++ +       LE GD V        + G     +    ++
Sbjct: 49  HGGFPEGEDHLVLGHEAVGVVVDPN--DTELEEGDIVVPTVRRPPASGTNEYFERDQPDM 106

Query: 78  CPEMRFFGS--PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANV- 134
            P+  +F       +G ++     P K   ++P + + E G + EP+S+   A   A   
Sbjct: 107 APDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPISITEKALEHAYAS 165

Query: 135 -----GPETNVMIMGSGPIGLVTLLAARAF--GAPRIII---TDVDVQRLSIARNLGADE 184
                   ++  ++G+G +GL+TL   +    G   +      D     + I   L A  
Sbjct: 166 RSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATY 225

Query: 185 TAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT 244
                T +EDV          +   +D  ++  GF K    ++ A  P G   L+G+   
Sbjct: 226 VDSRQTPVEDV--------PDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSD 277

Query: 245 EMTVALTPAA-----AREVDVIGIFRYRS--TWPLCIEFLRSGKIDVKPLITHRFGFTQK 297
                   A           ++G             + F +  K  ++ L+T     +  
Sbjct: 278 WAFEVDAGAFHREMVLHNKALVGSVNSHVEHFEAATVTFTKLPKWFLEDLVTGVHPLS-- 335

Query: 298 EIEDAFEISAQGGNAIKVM 316
           E E AF+        IK  
Sbjct: 336 EFEAAFD---DDDTTIKTA 351

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  308 bits (790), Expect = e-103
 Identities = 74/314 (23%), Positives = 131/314 (41%), Gaps = 30/314 (9%)

Query: 26  VKKPMVIGHECAGIIEEVGSEV------KSLEVGDRVALEPGISCGHCSLCKAGSYNLCP 79
              P+ +GHE +G++ E G E       K  E+G+ V  E  + CGHC  C  G  N C 
Sbjct: 89  TGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCE 148

Query: 80  EMRFFGSPPTNGSLAHKVVHPAKLCYKLPD-------NVSLEEGAMCEPLSVGVHAC--R 130
            +   G    +G+ A  V   AK  + L +       +     G++ EP SV  +A   R
Sbjct: 149 NLNELGFN-VDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVR 207

Query: 131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST 190
              + P  NV+I+G GPIGL  +   +  GA ++I+++    R ++A+ LGAD     + 
Sbjct: 208 GGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTK 267

Query: 191 DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK-----VCLIGLAKTE 245
             E+    V       G G  +  +  G  + +   +       +     V ++  A  +
Sbjct: 268 --ENFVEAVLDY--TNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAK 323

Query: 246 MTVALTPAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAF 303
           + +       R   ++G   +    T+P  I  + SG +D+  +I+       +EI +  
Sbjct: 324 IPLTGEVFQVRRAQIVGSQGHSGHGTFPRVISLMASG-MDMTKIISKTVSM--EEIPEYI 380

Query: 304 EISAQGGNAIKVMF 317
           +      + +KV  
Sbjct: 381 KRLQTDKSLVKVTM 394

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  263 bits (673), Expect = 2e-86
 Identities = 57/318 (17%), Positives = 102/318 (32%), Gaps = 40/318 (12%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
            K  +V+GHE  G++EE          GD V       CG C  C  G  + C    F  
Sbjct: 58  GKDFLVLGHEAIGVVEESYHGFS---QGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGE 114

Query: 86  S--PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRA----------- 132
           +     +G +        K   K+P ++  + G + +PL+    +               
Sbjct: 115 AGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGILAQPLADIEKSIEEILEVQKRVPVWT 173

Query: 133 ---NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 189
                     V+++G+GPIG++  L  R +G    +    +   +              S
Sbjct: 174 CDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNS 233

Query: 190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKT-MSTALNATRPGGKVCLIGLAKTE--- 245
           ++  D   D            DV  D  G D   +   +      G + L G + +    
Sbjct: 234 SNGYDKLKDSVG-------KFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVP 286

Query: 246 -MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKI----DVKPLITHRFGFTQKEI 299
                L         +IG+    +  +   +  L S K       K LIT        + 
Sbjct: 287 LDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSIN--DE 344

Query: 300 EDAFEISAQG-GNAIKVM 316
           ++  ++  +     IK+ 
Sbjct: 345 KELLKVLREKEHGEIKIR 362

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  235 bits (601), Expect = 2e-75
 Identities = 79/312 (25%), Positives = 121/312 (38%), Gaps = 26/312 (8%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKS-----LEVGDRVALEPGISCGHCSLCKAG-SYNLCP 79
           V  P+++GHE AG + EV  E +      L+ GD +    GI+CG C  CK      LCP
Sbjct: 69  VPLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCP 128

Query: 80  EMRFFGSPPTNGSLAHK--------VVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHACR 130
             + +G         H         V+ P     K+ +   L+  AM     +   HA  
Sbjct: 129 NRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFD 188

Query: 131 R-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 189
                     V+I G+GP+GL  ++ AR+ GA  +I+      RL +A  +GAD T    
Sbjct: 189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRR 248

Query: 190 -TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
            T +E+    +  I    G G D   +  G  + +       R GG   + G+A  +  V
Sbjct: 249 ETSVEERRKAIMDI--THGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPV 306

Query: 249 ALTPAAAR---EVDVIGIF-RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
                           GI+    S +   +         +  LITHR      E   A E
Sbjct: 307 PFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLK--EANKALE 364

Query: 305 ISAQGGNAIKVM 316
           +  +   A+KV+
Sbjct: 365 L-MESREALKVI 375

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  201 bits (513), Expect = 1e-62
 Identities = 79/285 (27%), Positives = 131/285 (45%), Gaps = 18/285 (6%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           VK P+ +GHE AG IEEVG EV     GD VA+ P    G+C  C+ G  +LC   R+ G
Sbjct: 60  VKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLG 119

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS-VGV---HACRRANVGPETNVM 141
               +G+ A  V+ P          ++  E A   PL+  G+    A R+A++ P   ++
Sbjct: 120 I-NFDGAYAEYVIVPHYKYMYKLRRLNAVEAA---PLTCSGITTYRAVRKASLDPTKTLL 175

Query: 142 IMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVG 200
           ++G  G +G + +  A+A     II  DV  + +  A+  GAD    ++  ++D   ++ 
Sbjct: 176 VVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV--INASMQDPLAEIR 233

Query: 201 KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDV 260
           +I      G+D   D    +KT+S    A    GK  ++GL   ++          E+  
Sbjct: 234 RITE--SKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQF 291

Query: 261 IGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
           +G     +S +   +    +GK  VKP+IT       +E  +A +
Sbjct: 292 VGSLVGNQSDFLGIMRLAEAGK--VKPMITKTMKL--EEANEAID 332

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  194 bits (496), Expect = 6e-60
 Identities = 74/311 (23%), Positives = 120/311 (38%), Gaps = 33/311 (10%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
            +  M++GHE  G + EVGSEVK  + GDRV +         S  + G +     M   G
Sbjct: 51  ERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGM-LAG 109

Query: 86  SPPTN---GSLAHKV-VHPAKL-CYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETN 139
              +N   G       V+ A +    LP  + LE   M  + ++ G H    AN+     
Sbjct: 110 WKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELANIKLGDT 169

Query: 140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDV 199
           V ++G GP+GL+++  A   GA RI           IA   GA +   ++    D+   +
Sbjct: 170 VCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDI--INYKNGDIVEQI 227

Query: 200 GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVD 259
            K  +  G G+D      G   T + A+   +PG  +  +        + +         
Sbjct: 228 LKATD--GKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDI------PRS 279

Query: 260 VIGIFR------------YRSTWPLCIEFLRSGKIDVKPLITHRF-GFTQKEIEDAFEI- 305
             G+               R      I+ +   ++D   L+TH F GF    IE AF + 
Sbjct: 280 EWGVGMGHKHIHGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFD--NIEKAFMLM 337

Query: 306 SAQGGNAIKVM 316
             +  + IK +
Sbjct: 338 KDKPKDLIKPV 348

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  185 bits (473), Expect = 1e-56
 Identities = 73/289 (25%), Positives = 112/289 (38%), Gaps = 22/289 (7%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
              P+ +GHE  G + E+G  V    VGD VA+     CG C  C  G  N C      G
Sbjct: 54  YGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLG 113

Query: 86  SPP----TNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRR--ANVGPE 137
             P    + GS+A  ++  +        ++     A      L+   HA  R    +GP 
Sbjct: 114 ITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPY-HAISRVLPLLGPG 172

Query: 138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDT 197
           +  +++G G +G V +   RA  A R+I  D+D  RL++AR +GAD   K          
Sbjct: 173 STAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGA----- 227

Query: 198 DVGKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAR 256
               I+    G G    FD VG   T+ TA       G + ++G+               
Sbjct: 228 -ADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGFFMIPF 286

Query: 257 EVDVIG-IFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
              V+   +  RS     +   R+G++D   + T  F     E   A+ 
Sbjct: 287 GASVVTPYWGTRSELMEVVALARAGRLD---IHTETFTLD--EGPAAYR 330

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  179 bits (457), Expect = 3e-54
 Identities = 74/287 (25%), Positives = 115/287 (40%), Gaps = 21/287 (7%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
            K P  +GHE  G IEEV   V+ LE GD V L P ++ G C  C+AG    C  + F G
Sbjct: 71  PKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPG 130

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS-VGV---HACRRA--NVGPETN 139
               +G  A  +    +   KLP ++S E+     PL+  G+    A ++A   + P   
Sbjct: 131 L-NIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAY 189

Query: 140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDV 199
           V I+G G +G + +   +      +I  DV  ++L +A  LGAD       D       V
Sbjct: 190 VAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRD------PV 243

Query: 200 GKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREV 258
            ++     G G++V+ D VG   T+          G++ ++G    E+        + EV
Sbjct: 244 KQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG-GELRFPTIRVISSEV 302

Query: 259 DVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
              G            +     GK+    +          EI D  E
Sbjct: 303 SFEGSLVGNYVELHELVTLALQGKVR---VEVDIHKL--DEINDVLE 344

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  164 bits (418), Expect = 1e-48
 Identities = 65/294 (22%), Positives = 119/294 (40%), Gaps = 36/294 (12%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
            + P+++GHE AG I EVG E+  ++ GD V +        C  C+ G +N+C      G
Sbjct: 57  FRLPIILGHENAGTIVEVG-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPG 115

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSV-GV---HACRRA----NVGPE 137
              TNG  +  ++  +       +++S  E A   PL+  G     A R+A    +   E
Sbjct: 116 Q-TTNGGFSEYMLVKSSRWLVKLNSLSPVEAA---PLADAGTTSMGAIRQALPFISKFAE 171

Query: 138 TNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNLGADETAKVSTDIEDVD 196
             V++ G G + + T+   +A      I+      +    A  LGAD  +    +++D +
Sbjct: 172 PVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVS----EMKDAE 227

Query: 197 TDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAR 256
           + + K+ +  G G  ++ D VG ++T           G + L+G+    +++     A  
Sbjct: 228 SLINKLTD--GLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVW 285

Query: 257 EVDVIGIFRYRSTW------PLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
              ++G     S +         +    SGKI        +      +I  AF 
Sbjct: 286 NKKLLG-----SNYGSLNDLEDVVRLSESGKIKP---YIIKVPLD--DINKAFT 329

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  164 bits (418), Expect = 3e-48
 Identities = 77/318 (24%), Positives = 123/318 (38%), Gaps = 53/318 (16%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR------ 82
           P V+GHE +GIIE +G  V  L+VGD V L  G  CG C+ C  G+   C E        
Sbjct: 60  PAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYG-YCGKCTQCNTGNPAYCSEFFGRNFSG 118

Query: 83  --------------------FFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPL 122
                               FF       S A   +       K+  +V +E      PL
Sbjct: 119 ADSEGNHALCTHDQGVVNDHFFAQ----SSFATYALSRENNTVKVTKDVPIELLG---PL 171

Query: 123 SVGVH-----ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 177
             G+            V P ++ +  G+G +GL  LLAA+  GA  II  D+   RL +A
Sbjct: 172 GCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA 231

Query: 178 RNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC 237
           + LGA     +++  +D    V  I+     G++ + +  G  + +   ++A    GK+ 
Sbjct: 232 KQLGATHV--INSKTQDP---VAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIA 286

Query: 238 LIGLAKTEMTVALTPAA--AREVDVIGIF----RYRSTWPLCIEFLRSGKIDVKPLITHR 291
           ++G  +   T              ++G+       +   P  +   + GK     L+   
Sbjct: 287 VVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF- 345

Query: 292 FGFTQKEIEDAFEISAQG 309
           + F   EI  A   S +G
Sbjct: 346 YAF--DEINQAAIDSRKG 361

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  159 bits (405), Expect = 4e-46
 Identities = 65/339 (19%), Positives = 116/339 (34%), Gaps = 54/339 (15%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           V K  V+GHE  G + E GS+V+ +++GD V++   ++CG C  CK    ++C       
Sbjct: 58  VPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNP 117

Query: 86  SPPT----------NGSLAHKV-VHPAKL-CYKLPDNVSLEEG-----AMCEPLSVGVHA 128
                         +G  A  V V  A     K  D     E       + + L  G H 
Sbjct: 118 DADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHG 177

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           C  A V P ++V I G+GP+G      AR  GA  +I+ D + +RL +  + G       
Sbjct: 178 CVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGF--ETID 235

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD--------------KTMSTALNATRPGG 234
             +   +   + +I       +D   D VGF+                +++  +  R GG
Sbjct: 236 LRNSAPLRDQIDQILG--KPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGG 293

Query: 235 KVCLIGLAKTEMTVALTPAAAREVDVIGIFRY--------------RSTWPLCIEFLRSG 280
            + + G+        +   A      +   +                +      E +   
Sbjct: 294 AIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYNRHLTEAILWD 353

Query: 281 KIDVKP--LITHRFGFTQKEIEDAFEISAQGGNAIKVMF 317
           ++      +          +  D +    +G    K + 
Sbjct: 354 QMPYLSKVMNIEVITLD--QAPDGYAKFDKGS-PAKFVI 389

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  158 bits (403), Expect = 8e-46
 Identities = 72/338 (21%), Positives = 127/338 (37%), Gaps = 53/338 (15%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC------P 79
            +  +V+GHE  G + E G +V++L++GD V++   ++CG C  CK     +C       
Sbjct: 59  AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPAR 118

Query: 80  EMRFFGSP---PTNGSLAHKVVHP-AKL-CYKLPDNVSLEEG-----AMCEPLSVGVHAC 129
               +G        G  A  V+ P A     KLPD     E       + + L  G H  
Sbjct: 119 AGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA 178

Query: 130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 189
             A VGP + V + G+GP+GL    +AR  GA  +I+ D++  RL+ A+  G +      
Sbjct: 179 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA--DL 236

Query: 190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD---------------KTMSTALNATRPGG 234
           +    +   +  +       +D + D VGF+                 +++ +  TR  G
Sbjct: 237 SLDTPLHEQIAALLG--EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAG 294

Query: 235 KVCLIGLAKTEMTVALTPAAAREVDVIGIFRY--------------RSTWPLCIEFLRSG 280
           K+ + GL  TE   A+  AA      I                          ++ +   
Sbjct: 295 KIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWD 354

Query: 281 KIDVKPLI-THRFGFTQKEIEDAFEISAQGGNAIKVMF 317
           +I++  ++          +    +     G    K + 
Sbjct: 355 RINIAEVVGVQVISLD--DAPRGYGEFDAGV-PKKFVI 389

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  154 bits (392), Expect = 2e-44
 Identities = 83/315 (26%), Positives = 132/315 (41%), Gaps = 43/315 (13%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+V+GHECAGI+E VG  V + + GD+V       C  C LC +   NLC ++R F  P 
Sbjct: 62  PVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPT 121

Query: 89  TNGSLA-------------------------HKVVHPAKLCYKLPDNVSLEEGAMCEPLS 123
            +  L                          + VV  A L  ++ D  +LE       + 
Sbjct: 122 IDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLA-RVDDEANLERVC---LIG 177

Query: 124 VGVH-----ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR 178
            G       A   A V P +   + G G +GL  ++  +  GA RII  D++ ++   A+
Sbjct: 178 CGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 237

Query: 179 NLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVC 237
            LGA +        + V      I      G+D S DC G  +T+  A++ T  G G   
Sbjct: 238 ALGATDCLNPRELDKPV---QDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCT 294

Query: 238 LIGLAKTEMTVALTP-AAAREV--DVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGF 294
           ++G    EMT+        R +     G ++   + P  +   ++ K D+  L+TH   F
Sbjct: 295 VVGAKVDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPF 354

Query: 295 TQKEIEDAFEISAQG 309
             + I DA ++  +G
Sbjct: 355 --ESINDAIDLMKEG 367

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  153 bits (390), Expect = 4e-44
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 41/315 (13%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---G 85
           P+++GH  AGI+E VG  V  L+ GD V       CG C  C     NLC ++R     G
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120

Query: 86  SPPTNGS--------LAH----------KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH 127
             P   S        + H           VV    +  K+     L++  +   L  G+ 
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVA-KIDPLAPLDKVCL---LGCGIS 176

Query: 128 -----ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
                A   A + P +   + G G +GL  ++  +  GA RII  D++  + + A+  GA
Sbjct: 177 TGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA 236

Query: 183 DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLIGL 241
            E        + +      +      G+D SF+C+G  K M  AL A   G G   ++G+
Sbjct: 237 TECINPQDFSKPI---QEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGV 293

Query: 242 AKTEMTVALTPA---AAREVD--VIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQ 296
           A +   +A  P      R       G ++   + P  +    S KI V   +TH   F  
Sbjct: 294 AASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSF-- 351

Query: 297 KEIEDAFEISAQGGN 311
            EI  AFE+   G +
Sbjct: 352 DEINKAFELMHSGKS 366

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  151 bits (385), Expect = 2e-43
 Identities = 73/315 (23%), Positives = 128/315 (40%), Gaps = 41/315 (13%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---G 85
           P++ GHE AGI+E +G  V ++  GD+V       CG C +CK    N C +       G
Sbjct: 62  PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRG 121

Query: 86  SPPTNGS--------LAH----------KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH 127
           +     S        + H           VV    +  K+     LE+  +   +  G  
Sbjct: 122 TMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVA-KIDAASPLEKVCL---IGCGFS 177

Query: 128 -----ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
                A + A V   +   + G G +GL  ++  +A GA RII  D++  + + A+ +GA
Sbjct: 178 TGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA 237

Query: 183 DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLIGL 241
            E        + +      +      G+D SF+ +G   TM TAL+  +   G   ++G+
Sbjct: 238 TECVNPQDYKKPI---QEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGV 294

Query: 242 AKTEMTVALTPAAAREVDVI-----GIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQ 296
                 +++ P              G F+ + + P  +    + K  + PLITH   F  
Sbjct: 295 PPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPF-- 352

Query: 297 KEIEDAFEISAQGGN 311
           ++I + F++   G +
Sbjct: 353 EKINEGFDLLRSGES 367

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  150 bits (380), Expect = 6e-43
 Identities = 78/285 (27%), Positives = 125/285 (43%), Gaps = 18/285 (6%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           +  P V+G + +G+++ VG  V+    GD V + PG+SCG C  C AG  NLCP  +  G
Sbjct: 55  LPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILG 114

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV--HA-CRRANVGPETNVMI 142
               +G+ A  VV P       P N+S EE A   PL+          +  V P  +V++
Sbjct: 115 EHR-HGTYAEYVVLPEANLAPKPKNLSFEEAA-AIPLTFLTAWQMVVDKLGVRPGDDVLV 172

Query: 143 MG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGK 201
           M     + +  +  A+ FGA R+I T     +L  A+ LGADET   +    D   +V +
Sbjct: 173 MAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYTH--PDWPKEVRR 229

Query: 202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG-LAKTEMTVALTPAAAREVDV 260
           +    G G D   D  G        + AT  GG++ + G  +  E T+       R++ +
Sbjct: 230 LTG--GKGADKVVDHTGAL-YFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSI 286

Query: 261 IGIF-RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
           +G     +S     + F+  GK+  KP++            +   
Sbjct: 287 LGSTMASKSRLFPILRFVEEGKL--KPVVGQVLPLE--AAAEGHR 327

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  146 bits (371), Expect = 2e-41
 Identities = 69/312 (22%), Positives = 118/312 (37%), Gaps = 41/312 (13%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---G 85
           P+++GHE  G++E +G+ V  ++ GD+V       CG C  CK+ + N C +       G
Sbjct: 63  PVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTG 122

Query: 86  SPPTNGS--------LAH---------KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA 128
                 S        + +           V       K+     LE   +    + G  A
Sbjct: 123 LMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLESCLIGCGFATGYGA 182

Query: 129 C-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK 187
               A V P +   + G G +G   ++  +A GA RII       +   A  LGA E   
Sbjct: 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLN 242

Query: 188 VSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLIGLAKTEM 246
                + +      I      G+D + +C G  +TM  AL +T  G G   ++GLA    
Sbjct: 243 PKDYDKPI---YEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNE 299

Query: 247 TVALTPAAAREVDVIGIFRYRSTW---------PLCIEFLRSGKIDVKPLITHRFGFTQK 297
            + L P     + ++     + +             ++     KI+V  L++ +      
Sbjct: 300 RLPLDP-----LLLLTGRSLKGSVFGGFKGEEVSRLVDDYMKKKINVNFLVSTKLTL--D 352

Query: 298 EIEDAFEISAQG 309
           +I  AFE+ + G
Sbjct: 353 QINKAFELLSSG 364

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  144 bits (365), Expect = 2e-40
 Identities = 74/313 (23%), Positives = 120/313 (38%), Gaps = 42/313 (13%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFF---G 85
           P+V+GHE AGI+E VG  V   + G++V       CG C  C++   N C +        
Sbjct: 63  PVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPD 122

Query: 86  SPPTNGS--------LAH----------KVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVH 127
                 +        +             VV+   +  K+  +  L+   +   L  GV 
Sbjct: 123 VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVA-KIDPSAPLDTVCL---LGCGVS 178

Query: 128 -----ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA 182
                A   A V P +   + G G +GL  ++   + GA RII  D++  +   A+  GA
Sbjct: 179 TGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 238

Query: 183 DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLIGL 241
            +    +   E +      +      G+D S +CVG    M  AL +   G G   L+G 
Sbjct: 239 TDFVNPNDHSEPI---SQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGW 295

Query: 242 AKTEMTVALTPA---AAREVD--VIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQ 296
                 VA  P    A R     + G F+ +   P  ++     K+ +   ITHR     
Sbjct: 296 TDLH-DVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPL-- 352

Query: 297 KEIEDAFEISAQG 309
           + + DA ++   G
Sbjct: 353 ESVNDAIDLMKHG 365

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  142 bits (360), Expect = 8e-40
 Identities = 68/285 (23%), Positives = 109/285 (38%), Gaps = 22/285 (7%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
           +  P V   + +G++E VG  V     GDRV                G     P     G
Sbjct: 81  LAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTG---RTPAYETLG 137

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV---HA-CRRANVGPETNVM 141
                G L+  VV P       P ++   E +   P   G+    A   + ++     V+
Sbjct: 138 G-AHPGVLSEYVVLPEGWFVAAPKSLDAAEAS-TLPC-AGLTAWFALVEKGHLRAGDRVV 194

Query: 142 IMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGK 201
           + G+G + L  L  A+A GA  +I+T    ++L  A  LGAD         ED    V  
Sbjct: 195 VQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLE--EDWVERVYA 251

Query: 202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG-LAKTEMTVALTPAAAREVDV 260
           +      G D   +  G    +  +L A  P G++ +IG L   E++  + P   +   V
Sbjct: 252 LTG--DRGADHILEIAGGA-GLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVV 308

Query: 261 IGIF-RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
            GI   +R      +  +    +  KP+I  R+ FT  E+ +A  
Sbjct: 309 QGISVGHRRALEDLVGAVDRLGL--KPVIDMRYKFT--EVPEALA 349

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  143 bits (362), Expect = 2e-39
 Identities = 59/303 (19%), Positives = 97/303 (32%), Gaps = 29/303 (9%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
             V+G +C+G++   G  V+  + GD V + P            G   L  E R +G   
Sbjct: 110 YHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAH-VDEQEPATHGDGMLGTEQRAWGFET 168

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG-----VHACRRANVGPETNVMIM 143
             G LA   V  A      P +++ EE A   PL  G     + + R A +     V+I 
Sbjct: 169 NFGGLAEYGVVRASQLLPKPAHLTWEEAA-VSPLCAGTAYRMLVSDRGAQMKQGDIVLIW 227

Query: 144 G-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-------------AKVS 189
           G SG +G   +   +  G    +      Q+ +  R LG D                   
Sbjct: 228 GASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPR 286

Query: 190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG-LAKTEMTV 248
             +E        +    G   D+ F+  G   T   ++   R GG V   G  +    T 
Sbjct: 287 RVVETGRKLAKLVVEKAGREPDIVFEHTG-RVTFGLSVIVARRGGTVVTCGSSSGYLHTF 345

Query: 249 ALTPAAAREVDVIGIFR-YRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA 307
                  +   ++G                 SG +   P ++  +     E  +A  +  
Sbjct: 346 DNRYLWMKLKKIVGSHGANHEEQQATNRLFESGAV--VPAMSAVYPL--AEAAEACRVVQ 401

Query: 308 QGG 310
              
Sbjct: 402 TSR 404

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  136 bits (344), Expect = 7e-37
 Identities = 64/297 (21%), Positives = 99/297 (33%), Gaps = 29/297 (9%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
             VIG + AG++   G  V + + GD V           S        L PE R +G   
Sbjct: 118 YHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDG-HNDTMLDPEQRIWGFET 176

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG-----VHACRRANVGPETNVMIM 143
             G LA   +  +      PD++S EE A    L        + +   A +    NV+I 
Sbjct: 177 NFGGLAEIALVKSNQLMPKPDHLSWEEAA-APGLVNSTAYRQLVSRNGAGMKQGDNVLIW 235

Query: 144 G-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-----------AKVSTD 191
           G SG +G      A A GA   I      Q+  I R +GA+                +T 
Sbjct: 236 GASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQ 294

Query: 192 IEDVDTDVGKIQNAM--GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG-LAKTEMTV 248
                   GK    +  G  ID+ F+  G  +T   ++  TR GG +      +      
Sbjct: 295 DPKEWKRFGKRIRELTGGEDIDIVFEHPG-RETFGASVFVTRKGGTITTCASTSGYMHEY 353

Query: 249 ALTPAAAREVDVIGI-FRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE 304
                      +IG  F            +  G+I   P ++  +    ++   A  
Sbjct: 354 DNRYLWMSLKRIIGSHFANYREAWEANRLIAKGRI--HPTLSKVYSL--EDTGQAAY 406

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  132 bits (334), Expect = 3e-36
 Identities = 70/244 (28%), Positives = 101/244 (41%), Gaps = 26/244 (10%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRF 83
           P + GHE  G +  VGS V  ++ GDRV    G+     +CG+C  C  G   LC + + 
Sbjct: 58  PFIPGHEGVGYVSAVGSGVSRVKEGDRV----GVPWLYSACGYCEHCLQGWETLCEKQQN 113

Query: 84  FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGV---HACRRANVGPET 138
            G    NG     VV        LPD V   E A  +C     GV      +  +  P  
Sbjct: 114 TGY-SVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILC----AGVTVYKGLKVTDTRPGQ 168

Query: 139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD 198
            V+I G G +G V +  ARA G  R+   D+D  +L++AR LGA+    V+    D    
Sbjct: 169 WVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVA--VNARDTDP--- 222

Query: 199 VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREV 258
              +Q  +G G           K  S A+   R GG + L GL   +    +     + +
Sbjct: 223 AAWLQKEIG-GAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGI 281

Query: 259 DVIG 262
            + G
Sbjct: 282 TIRG 285

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  130 bits (330), Expect = 9e-36
 Identities = 75/244 (30%), Positives = 107/244 (43%), Gaps = 26/244 (10%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRF 83
           P++ GHE  GI+EEVG  V  L+VGDRV    GI     +CGHC  C +G   LC   + 
Sbjct: 56  PLIPGHEGVGIVEEVGPGVTHLKVGDRV----GIPWLYSACGHCDYCLSGQETLCEHQKN 111

Query: 84  FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGV---HACRRANVGPET 138
            G    +G  A      A    K+PDN+S EE A   C     GV    A +     P  
Sbjct: 112 AGY-SVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFC----AGVTTYKALKVTGAKPGE 166

Query: 139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD 198
            V I G G +G V +  A+A G   ++  D+  ++L +A+ LGAD        +  +  D
Sbjct: 167 WVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLV------VNPLKED 219

Query: 199 VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREV 258
             K       G+  +           +A N+ R GG   L+GL   EM + +       +
Sbjct: 220 AAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGI 279

Query: 259 DVIG 262
            +IG
Sbjct: 280 KIIG 283

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  124 bits (315), Expect = 2e-33
 Identities = 58/230 (25%), Positives = 92/230 (40%), Gaps = 31/230 (13%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPE 80
           VK P+V GHE AG++  +G  VK  ++GD      GI     SC  C  C+ G+ + CP 
Sbjct: 58  VKLPLVGGHEGAGVVVGMGENVKGWKIGDYA----GIKWLNGSCMACEYCELGNESNCPH 113

Query: 81  MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGV---HACRRANVG 135
               G    +GS        A     +P    L + A  +C     G+    A + AN+ 
Sbjct: 114 ADLSGY-THDGSFQQYATADAVQAAHIPQGTDLAQVAPILC----AGITVYKALKSANLM 168

Query: 136 PETNVMIMGSGPIGL----VTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 191
               V I G+   GL    V    A+A G  R++  D    +  + R++G +      T 
Sbjct: 169 AGHWVAISGAAG-GLGSLAVQY--AKAMGY-RVLGIDGGEGKEELFRSIGGEVFI-DFTK 223

Query: 192 IEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL 241
            +D+   VG +  A   G     +    +  +  +    R  G   L+G+
Sbjct: 224 EKDI---VGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGM 270

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  116 bits (293), Expect = 2e-30
 Identities = 49/309 (15%), Positives = 110/309 (35%), Gaps = 54/309 (17%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P V G+E    +  VGS V  L+ GD V                             +  
Sbjct: 85  PAVGGNEGVAQVVAVGSNVTGLKPGDWVI---------------------------PANA 117

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-S 145
             G+   + V   +   ++P ++ L+  A     P +          + P  +V+    +
Sbjct: 118 GLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASN 177

Query: 146 GPIGLVTLLAARAFGAPRIII--TDVDVQRLS-IARNLGADETAKVSTDIEDVDTDVGKI 202
             +G   +  A A G   I +     D+Q+LS   ++LGA+    ++ +           
Sbjct: 178 SGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHV--ITEEELRRPEMKNFF 235

Query: 203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG-LAKTEMTVALTPAAAREVDVI 261
           ++       ++ +CVG  K+ +  L     GG +   G +AK  +  +++    +++ + 
Sbjct: 236 KD--MPQPRLALNCVG-GKSSTELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLR 292

Query: 262 GIF-----------RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG 310
           G +           +++       + +R G++        +     ++ + A E S +  
Sbjct: 293 GFWLSQWKKDHSPDQFKELILTLCDLIRRGQL--TAPACSQVPL--QDYQSALEASMKPF 348

Query: 311 NAIKVMFNL 319
            + K +  +
Sbjct: 349 ISSKQILTM 357

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  109 bits (275), Expect = 9e-28
 Identities = 66/304 (21%), Positives = 113/304 (37%), Gaps = 59/304 (19%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P   G + AG+IE VG    + + GDRV           S   +G Y             
Sbjct: 88  PYTPGSDVAGVIEAVGDNASAFKKGDRVF---------TSSTISGGY------------- 125

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG-VHAC--RRANVGPETNVMIMG- 144
                A   +      YKLP+ +  ++GA    +     +      A V    +V++ G 
Sbjct: 126 -----AEYALAADHTVYKLPEKLDFKQGA-AIGIPYFTAYRALIHSACVKAGESVLVHGA 179

Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
           SG +GL     ARA+G  +I+ T    +   I    GA E         +    + K   
Sbjct: 180 SGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHRE--VNYIDKIKKYVG 236

Query: 205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIF 264
               GID+  + +     +S  L+    GG+V ++G   T + +      A+E  +IG+ 
Sbjct: 237 --EKGIDIIIEMLANV-NLSKDLSLLSHGGRVIVVGSRGT-IEINPRDTMAKESSIIGVT 292

Query: 265 RYRST-----------WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAI 313
            + ST                  +  G +  KP+I  ++    +++ +A E    G  A 
Sbjct: 293 LFSSTKEEFQQYAAALQAG----MEIGWL--KPVIGSQYPL--EKVAEAHENIIHGSGAT 344

Query: 314 -KVM 316
            K++
Sbjct: 345 GKMI 348

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score =  106 bits (266), Expect = 2e-26
 Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 40/233 (17%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRF 83
           P+V GHE  G + EVGS+VK + VGD+V    G+     +C  C  C     N CP+M  
Sbjct: 71  PLVPGHEIVGEVTEVGSKVKKVNVGDKV----GVGCLVGACHSCESCANDLENYCPKMIL 126

Query: 84  -FGSPPTNGSLAH-----KVVHPAKLCYKLPDNVSLEEGA--MC------EPLSVGVHAC 129
            + S   +G++ +      +V   +   + PDN+ L+ GA  +C       PL       
Sbjct: 127 TYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPL------- 179

Query: 130 RRANVG-PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
           +   +  P  ++ I+G G +G V +  A+AFG+   +I+    ++    +N GAD     
Sbjct: 180 KYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFL-- 237

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL 241
                 V  D  ++Q A G+ +D   D V     +       +  GK+ L+G 
Sbjct: 238 ------VSRDQEQMQAAAGT-LDGIIDTVSAVHPLLPLFGLLKSHGKLILVGA 283

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score =  104 bits (263), Expect = 6e-26
 Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 42/246 (17%)

Query: 29  PMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMR 82
           P+V+GHE  G + ++G +  S L+VG RV    G+     SC  C  CK  +   C +  
Sbjct: 63  PLVVGHEIVGKVVKLGPKSNSGLKVGQRV----GVGAQVFSCLECDRCKNDNEPYCTKFV 118

Query: 83  F-FGSPPTNGSL-----AHKVVHPAKLCYKLPDNVSLEEGA--MC------EPLSVGVHA 128
             +  P  +G +     A+ V         +P+N+     A  +C       PL      
Sbjct: 119 TTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPL------ 172

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
             R   GP   V I+G G IG +  L ++A GA   +I+    +R   A  +GAD     
Sbjct: 173 -VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR-EDAMKMGADHYI-A 229

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTA--LNATRPGGKVCLIGLAKTEM 246
           + +  D        +    +  D+   C      +       A + GG++  I + +   
Sbjct: 230 TLEEGD------WGEKYFDT-FDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHE 282

Query: 247 TVALTP 252
            ++L P
Sbjct: 283 MLSLKP 288

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  103 bits (259), Expect = 2e-25
 Identities = 45/323 (13%), Positives = 93/323 (28%), Gaps = 67/323 (20%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
               G+E    + +VGS V SLE GD V                             S  
Sbjct: 73  AAPCGNEGLFEVIKVGSNVSSLEAGDWVI---------------------------PSHV 105

Query: 89  TNGSLAHKVVHPAKLCYKL-----------PDNVSLEEGAMCEPLSV----GVHAC-RRA 132
             G+     +       KL           P+ +++ +GA    +SV             
Sbjct: 106 NFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGAT---ISVNPLTAYLMLTHYV 162

Query: 133 NVGPETNVMIM--GSGPIGLVTLLAARAFGAPRIIIT---DVDVQRLSIARNLGADETAK 187
            + P  +  I   G+  +G       +      I +        + ++  + LGA +   
Sbjct: 163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVIT 222

Query: 188 VST-DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG-LAKTE 245
               +  +    + +     G    ++ +CVG  K+ +         G +   G ++   
Sbjct: 223 EDQNNSREFGPTIKEWIKQSGGEAKLALNCVG-GKSSTGIARKLNNNGLMLTYGGMSFQP 281

Query: 246 MTVALTPAAAREVDVIGIF----------RYRSTWPLCIEFLRSGKIDVKPLITHRFGFT 295
           +T+  +    +     G +             ST    I +   GK+      +    + 
Sbjct: 282 VTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKL--TDAKSIETLYD 339

Query: 296 Q-KEIEDAFEISAQGGNAIKVMF 317
             K + + ++         K + 
Sbjct: 340 GTKPLHELYQDGVANSKDGKQLI 362

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  103 bits (258), Expect = 2e-25
 Identities = 48/288 (16%), Positives = 87/288 (30%), Gaps = 58/288 (20%)

Query: 29  PMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 87
               G E  G I   G E  +   VG RVA   G+S         GS+            
Sbjct: 80  GRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNW-------GSW------------ 120

Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG- 144
                 A   V  A  C  L D V  E+GA  +  PL+  +          E   ++   
Sbjct: 121 ------AEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTA-IAMFDIVKQEGEKAFVMTAG 173

Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
           +  +  + +  A+  G  R I+T    +++++ +++GA     ++    D +  + ++  
Sbjct: 174 ASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDIGAAHV--LNEKAPDFEATLREVMK 230

Query: 205 AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA--AREVDVIG 262
                  +  D V      S   NA     +  + G    + TV   P     +   + G
Sbjct: 231 --AEQPRIFLDAVT-GPLASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEG 287

Query: 263 IF-RYRST-------------WPLCIEFLRSGKIDVKPLITHRFGFTQ 296
            +                             G+      +T      +
Sbjct: 288 FWLSEWMRQFKERRGPAILEAQKR----FSDGRW--STDVTAVVPLAE 329

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score =  102 bits (256), Expect = 4e-25
 Identities = 56/247 (22%), Positives = 89/247 (36%), Gaps = 47/247 (19%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEM-- 81
           PM+ GHE AGII+EVG  VK  ++GD V    G+     SC  C  CK      C ++  
Sbjct: 59  PMIPGHEIAGIIKEVGKGVKKFKIGDVV----GVGCFVNSCKACKPCKEHQEQFCTKVVF 114

Query: 82  ------RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MC------EPLSVGVH 127
                  F  + P  G  ++ +V        +  N  LE+ A  +C       PL     
Sbjct: 115 TYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPL----- 169

Query: 128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK 187
             + + V   T V + G G +G + +  A A GA   +    + ++   A ++G      
Sbjct: 170 --KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKK-QDALSMGVKHFY- 225

Query: 188 VSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMT 247
                   D             +D     +     +   L      G + L+GL   E+ 
Sbjct: 226 -------TDPK------QCKEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVA 272

Query: 248 VALTPAA 254
             L+   
Sbjct: 273 PVLSVFD 279

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  102 bits (256), Expect = 4e-25
 Identities = 58/326 (17%), Positives = 108/326 (33%), Gaps = 85/326 (26%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+V G EC+GI+E +G  VK  E+GDRV           +     ++             
Sbjct: 61  PLVPGFECSGIVEALGDSVKGYEIGDRV----------MAFVNYNAW------------- 97

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG-VHAC--RRANVGPETNVMI-MG 144
                A  V  P +  YK+PD++S  E A   P++    +      AN+    +V++   
Sbjct: 98  -----AEVVCTPVEFVYKIPDDMSFSEAA-AFPMNFVTAYVMLFEVANLREGMSVLVHSA 151

Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD-VGKIQ 203
            G +G               +       +    ++            + D + D V +++
Sbjct: 152 GGGVGQAVAQLCSTVPN-VTVFGTASTFKHEAIKDSVT--------HLFDRNADYVQEVK 202

Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA-------KTEMTVALTPAAAR 256
                G+D+  DC+         L+  +P G   L G +       K+  + A +     
Sbjct: 203 RISAEGVDIVLDCLC-GDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVE 261

Query: 257 EVD----------VIGIF--RYRST--------------WPLCIEFLRSGKIDVKPLITH 290
           +V+          + G                         L        KI  KP++  
Sbjct: 262 KVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGL----YNQKKI--KPVVDS 315

Query: 291 RFGFTQKEIEDAFEISAQGGNAIKVM 316
            +     E+++A +     GN  K++
Sbjct: 316 LWALE--EVKEAMQRIHDRGNIGKLI 339

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score =  102 bits (256), Expect = 5e-25
 Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 40/233 (17%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRF 83
           PMV GHE  G + EVGS+V    VGD V    G+      CG CS C+      CP+  +
Sbjct: 64  PMVPGHEVVGEVVEVGSDVSKFTVGDIV----GVGCLVGCCGGCSPCERDLEQYCPKKIW 119

Query: 84  -FGSPPTNGSLAH-----KVVHPAKLCYKLPDNVSLEEGA--MC------EPLSVGVHAC 129
            +     NG           V   K   K+P+ +++E+ A  +C       PL       
Sbjct: 120 SYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPL------- 172

Query: 130 RRANVG-PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV 188
               +  P     I+G G +G + +  A+A G    +I+  + +R    ++LGAD+    
Sbjct: 173 SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYV-- 230

Query: 189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL 241
                 + +D  K+     S +D   D V     +   L+  +  GK+ L+G+
Sbjct: 231 ------IGSDQAKMSELADS-LDYVIDTVPVHHALEPYLSLLKLDGKLILMGV 276

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  101 bits (254), Expect = 7e-25
 Identities = 50/296 (16%), Positives = 92/296 (31%), Gaps = 63/296 (21%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P + G+E  GI+E VG+ V    +G RV            L   G++             
Sbjct: 63  PNIPGYEGVGIVENVGAFVSRELIGKRV----------LPLRGEGTW------------- 99

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-S 145
                   V   A     +PD++     A     PL+  V      N+     +++    
Sbjct: 100 -----QEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACG 154

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
             IG +    ++     R+I    + +       LGA     + T    +   V ++ N 
Sbjct: 155 SAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYV--IDTSTAPLYETVMELTN- 210

Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFR 265
            G G D + D +G     +    + RP G    IGL      V       +      IF 
Sbjct: 211 -GIGADAAIDSIGGP-DGNELAFSLRPNGHFLTIGLLSGI-QVNWAEIVTKAKVHANIFH 267

Query: 266 YRST----------------WPLCIEFLRSGKIDVKPL-ITHRFGFTQKEIEDAFE 304
            R                    L    + + ++  + + +   +     +++ A +
Sbjct: 268 LRHWNDEVSPYKWQETFRHLIRL----VENEQL--RFMKVHSTYEL--ADVKAAVD 315

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  101 bits (253), Expect = 8e-25
 Identities = 50/291 (17%), Positives = 103/291 (35%), Gaps = 50/291 (17%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
              P  +G++ +G + E+GS+V ++ +GD+V        G                   G
Sbjct: 65  NNLPSGLGYDFSGEVIELGSDVNNVNIGDKV-------MG-----------------IAG 100

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV---HACRRANVGPETNVMI 142
            P      A  V        +  + +S  + A   P   G+    A  +A V     V+I
Sbjct: 101 FPDHPCCYAEYVCASPDTIIQKLEKLSFLQAA-SLPT-AGLTALQALNQAEVKQGDVVLI 158

Query: 143 MG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGK 201
              +G +G + +  A+  G   +I T    +  +  + LGA++          ++     
Sbjct: 159 HAGAGGVGHLAIQLAKQKGT-TVITT-ASKRNHAFLKALGAEQC---------INYHEED 207

Query: 202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVI 261
              A+ + +D   D VG D     +++  +  G +  +        + +  A  +     
Sbjct: 208 FLLAISTPVDAVIDLVGGD-VGIQSIDCLKETGCIVSVPTITAGRVIEV--AKQKHRRAF 264

Query: 262 GIFRYRSTWPL--CIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG 310
           G+ +  +   L    + +   K+  +  I+  F  +  E   A E+   G 
Sbjct: 265 GLLKQFNIEELHYLGKLVSEDKL--RIEISRIFQLS--EAVTAHELLETGH 311

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score =  101 bits (254), Expect = 1e-24
 Identities = 54/234 (23%), Positives = 86/234 (36%), Gaps = 42/234 (17%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-----SCGHCSLCKAGSYNLCPEMRF 83
           P V GHE  G +  VG +V+    GD V    G+     SC HC  C+ G  N C  M  
Sbjct: 77  PCVPGHEIVGRVVAVGDQVEKYAPGDLV----GVGCIVDSCKHCEECEDGLENYCDHMTG 132

Query: 84  -------FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA---MC------EPLSVGVH 127
                       T G  + ++V   +   ++             +C       PL     
Sbjct: 133 TYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPL----- 187

Query: 128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK 187
             R    GP   V ++G G +G + +  A A GA  +  T  + +R + A+ LGADE   
Sbjct: 188 --RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREA-AKALGADEVV- 243

Query: 188 VSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL 241
            S + ++       +   + S  D   + V     +       +  G + L+G 
Sbjct: 244 NSRNADE-------MAAHLKS-FDFILNTVAAPHNLDDFTTLLKRDGTMTLVGA 289

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score =  100 bits (251), Expect = 2e-24
 Identities = 52/217 (23%), Positives = 88/217 (40%), Gaps = 36/217 (16%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P  +G E AGI+ +VGS VK ++ GDRV                          +  S  
Sbjct: 58  PSGLGTEAAGIVSKVGSGVKHIKAGDRVV-------------------------YAQSAL 92

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-S 145
             G+ +      A     LP  +S E+ A    + L+V     +   + P+   +    +
Sbjct: 93  --GAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAA 150

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
           G +GL+    A+A GA ++I T    Q+   A   GA +   ++   ED+   + +I   
Sbjct: 151 GGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQV--INYREEDLVERLKEITG- 206

Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
            G  + V +D VG D T   +L+  +  G +   G +
Sbjct: 207 -GKKVRVVYDSVGRD-TWERSLDCLQRRGLMVSFGNS 241

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =   99 bits (250), Expect = 2e-24
 Identities = 56/304 (18%), Positives = 104/304 (34%), Gaps = 59/304 (19%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P V G E AG++     E   ++ GDRV           +    G Y             
Sbjct: 79  PFVPGIETAGVVRSAP-EGSGIKPGDRV----------MAFNFIGGY------------- 114

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG-VHAC--RRANVGP-ETNVMIMG 144
                A +V          P  +   E       +   ++    RR  +   ET V+++G
Sbjct: 115 -----AERVAVAPSNILPTPPQLDDAEAV-ALIANYHTMYFAYARRGQLRAGET-VLVLG 167

Query: 145 -SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
            +G IG   +  A+  GA ++I            +++GAD    +          V +  
Sbjct: 168 AAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPLEEGWAKA---VREAT 223

Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEM-TVALTPAAAREVDVIG 262
              G+G+D+  D +G       A+      G++ ++G A   + T+ +     R   +IG
Sbjct: 224 G--GAGVDMVVDPIGGP-AFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIG 280

Query: 263 IF----------RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNA 312
           +               T     + +  G   ++P ++ R   +  E   A +  A G   
Sbjct: 281 VAWGEFLRTHADYLYETQAGLEKLVAEG---MRPPVSARIPLS--EGRQALQDFADGKVY 335

Query: 313 IKVM 316
            K++
Sbjct: 336 GKMV 339

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 98.4 bits (246), Expect = 6e-24
 Identities = 50/305 (16%), Positives = 91/305 (29%), Gaps = 64/305 (20%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
             V G + AG+I +VG++V S  +G RVA                         +  S  
Sbjct: 59  GHVPGVDGAGVIVKVGAKVDSKMLGRRVA-------------------------YHTSLK 93

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV---HACRRANVGPETNVMIMGS 145
            +GS A   V        LPDN+S E  A   P    +    A  +  +  +  V+I+G 
Sbjct: 94  RHGSFAEFTVLNTDRVMTLPDNLSFERAA-ALPC-PLLTAWQAFEKIPLTKQREVLIVGF 151

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
           G +  +        G   ++         ++A   G            +           
Sbjct: 152 GAVNNLLTQMLNNAGY--VVDLVSASLSQALAAKRGVRHL------YREPSQVT------ 197

Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIF- 264
                   FD V   +  +  + + +  G +  I      +   + PA  R +    I  
Sbjct: 198 --QKYFAIFDAVN-SQNAAALVPSLKANGHIICIQ---DRIPAPIDPAFTRTISYHEIAL 251

Query: 265 RYRSTWPLCIEFLRSGKI-----------DVKPLITHRFGFTQKEIEDAFEISAQGGNAI 313
                +    ++    +             ++      F F Q  + +A + S Q     
Sbjct: 252 GALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQ--MIEALDHSEQTKLKT 309

Query: 314 KVMFN 318
            +  N
Sbjct: 310 VLTLN 314

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 98.0 bits (245), Expect = 9e-24
 Identities = 64/217 (29%), Positives = 96/217 (44%), Gaps = 36/217 (16%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P  +G E AG++E VG EV   +VGDRVA                         +   P 
Sbjct: 58  PSGLGAEGAGVVEAVGDEVTRFKVGDRVA-------------------------YGTGPL 92

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG-S 145
             G+ +   V P     KL D+VS E+ A  M + L+V     +   V P   ++    +
Sbjct: 93  --GAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAA 150

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
           G +G +    A+A GA ++I T    ++ + A+ LGA ET  +    EDV   V ++ + 
Sbjct: 151 GGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWET--IDYSHEDVAKRVLELTD- 206

Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
            G    V +D VG D T  T+L++  P G V   G A
Sbjct: 207 -GKKCPVVYDGVGQD-TWLTSLDSVAPRGLVVSFGNA 241

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 98.1 bits (245), Expect = 1e-23
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 38/222 (17%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFG 85
            + P+V+G E A ++EEVG  V    VG+RV                             
Sbjct: 58  GEPPIVVGFEAAAVVEEVGPGVTDFTVGERVC-------------------------TCL 92

Query: 86  SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHAC----RRANVGPETNVM 141
            P   G+ + + ++PA+   K+P ++ L++  +   +  G+ A     +   V P   V+
Sbjct: 93  PPL--GAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVL 150

Query: 142 IM-GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVG 200
           I   +G +G + +  AR  GA  +I T    ++   AR LG   T  ++   +D    V 
Sbjct: 151 IHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHT--INYSTQDFAEVVR 207

Query: 201 KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA 242
           +I    G G+DV +D +G D T+  +L+  RP G     G A
Sbjct: 208 EITG--GKGVDVVYDSIGKD-TLQKSLDCLRPRGMCAAYGHA 246

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 98.0 bits (245), Expect = 1e-23
 Identities = 71/309 (22%), Positives = 108/309 (34%), Gaps = 65/309 (21%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
             ++G E +G I  VG  V    VGD+V          C L   G+Y             
Sbjct: 86  SPILGLELSGEIVGVGPGVSGYAVGDKV----------CGLANGGAY------------- 122

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGA-MCEPLSVGVHA-CRRANVGPETNVMIM-GS 145
                A   + PA      P      + A + E          + A +    +V+I  G+
Sbjct: 123 -----AEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGT 177

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
             IG   +  ARAFGA  +  T     +      LGA       +  ED       I+  
Sbjct: 178 SGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAKRGINYRS--EDF---AAVIKAE 231

Query: 206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL---AKTEMTVALTPAAAREVDVIG 262
            G G+D+  D +G        + +    G + +I     A  E  V L+P   + + V G
Sbjct: 232 TGQGVDIILDMIGAA-YFERNIASLAKDGCLSIIAFLGGAVAE-KVNLSPIMVKRLTVTG 289

Query: 263 IF-RYRST--------------WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISA 307
              R R+               WPL    L +G +   P+I   F F   ++ DA  +  
Sbjct: 290 STMRPRTAEEKRAIRDDLLSEVWPL----LEAGTV--APVIHKVFAFE--DVADAHRLLE 341

Query: 308 QGGNAIKVM 316
           +G +  KVM
Sbjct: 342 EGSHVGKVM 350

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 95.7 bits (239), Expect = 9e-23
 Identities = 62/308 (20%), Positives = 109/308 (35%), Gaps = 64/308 (20%)

Query: 23  NFI----------VKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKA 72
           N+I           +KP V+G E +G +   G  V + EVGD+VA               
Sbjct: 48  NYIESYFRKGIYPCEKPYVLGREASGTVVAKGKGVTNFEVGDQVA-----------YISN 96

Query: 73  GSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEE-----GAMCEPLSVGVH 127
            ++                   +  +       KLP   S EE       + + L+    
Sbjct: 97  STFA-----------------QYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSF 139

Query: 128 ACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETA 186
                +V     V++   +G +GL+     +  GA   I      ++L IA+  GA+   
Sbjct: 140 TNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYL- 197

Query: 187 KVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEM 246
            ++   ED+   V K  N  G G+D SFD VG D T   +L A +  G     G A   +
Sbjct: 198 -INASKEDILRQVLKFTN--GKGVDASFDSVGKD-TFEISLAALKRKGVFVSFGNASGLI 253

Query: 247 T-VALTPAAAREVDVIG--IFRYRSTWPLC-------IEFLRSGKIDVKPLITHRFGFTQ 296
              ++T  + + + ++   ++ Y +               + S K+     I   +    
Sbjct: 254 PPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKL--NIKIYKTYPL-- 309

Query: 297 KEIEDAFE 304
           ++   A  
Sbjct: 310 RDYRTAAA 317

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 95.4 bits (238), Expect = 1e-22
 Identities = 63/290 (21%), Positives = 102/290 (35%), Gaps = 65/290 (22%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P ++G + AG +  VG EV S  VGD V        G                   G   
Sbjct: 64  PAILGMDLAGTVVAVGPEVDSFRVGDAV-------FG----------------LTGGVGG 100

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA----CRRANVGPETNVMIM- 143
             G+ A      A+L    P  +++ + +   PL V + A      RA V     V+I  
Sbjct: 101 LQGTHAQFAAVDARLLASKPAALTMRQAS-VLPL-VFITAWEGLVDRAQVQDGQTVLIQG 158

Query: 144 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
           G G +G V +  A A GA R+  T      L   R+LGA             + +    +
Sbjct: 159 GGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATPI------DASREPEDYAAE 210

Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGI 263
           +  G G D+ +D +G    +  + +A +  G V          T  L P + ++    G+
Sbjct: 211 HTAGQGFDLVYDTLG-GPVLDASFSAVKRFGHVVSCL---GWGTHKLAPLSFKQATYSGV 266

Query: 264 FRYRST----------------WPLCIEFLRSGKIDVKPLITHR-FGFTQ 296
           F   +                   L    +++GK+   P +  R F   +
Sbjct: 267 FTLHTLLANEGLAHFGEMLREADAL----VQTGKL--APRLDPRTFSIAE 310

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 93.6 bits (233), Expect = 7e-22
 Identities = 52/329 (15%), Positives = 98/329 (29%), Gaps = 76/329 (23%)

Query: 22  ANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEM 81
                     +G + AG +  VGS+V  ++VGDRV        G  +     +       
Sbjct: 56  RGQFATPWAFLGTDYAGTVVAVGSDVTHIQVGDRV-------YGAQNEMCPRT------- 101

Query: 82  RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSV---------------GV 126
                 P  G+ +   V   ++  K+P  +S E+ A   P  +                 
Sbjct: 102 ------PDQGAFSQYTVTRGRVWAKIPKGLSFEQAA-ALPAGISTAGLAMKLLGLPLPSP 154

Query: 127 HACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET 185
            A +         V++ G S     VT+   R  G    I T        +A++ GA+E 
Sbjct: 155 SADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIAT-CSPHNFDLAKSRGAEEV 212

Query: 186 AKVSTDIEDVD----TDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT-RPGGKVCLI- 239
                     D         I+    + +  + DC+   ++ +    A  R GG    + 
Sbjct: 213 ---------FDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLN 263

Query: 240 ---------GLAKTEMTVALTPAAAREVDVIGIFRYRST----------WPLCIEFLRSG 280
                     +  T+ T+  T            +    +          W +  + +  G
Sbjct: 264 PFPEHAATRKMVTTDWTLGPT-IFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDG 322

Query: 281 KIDVKPLITHRFGFTQKEIEDAFEISAQG 309
           ++                I+   E+  +G
Sbjct: 323 RL--VHHPLRVVQGGFDHIKQGMELVRKG 349

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 49/304 (16%), Positives = 93/304 (30%), Gaps = 58/304 (19%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
             VIG++ AGI+  VG +V     GD V                  +       + GS  
Sbjct: 82  WKVIGYDAAGIVSAVGPDVTLFRPGDEV------------------F-------YAGSII 116

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHA----CRRANVGPETNV---- 140
             G+ A   +   ++  + P  +   E A   PL   + A      R +V          
Sbjct: 117 RPGTNAEFHLVDERIVGRKPKTLDWAEAA-ALPL-TSITAWEAFFDRLDVNKPVPGAAPA 174

Query: 141 --MIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD 198
             ++ G+G +G + +  AR      +I T    +     ++LGA         I+     
Sbjct: 175 ILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHV------IDHSKPL 228

Query: 199 VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREV 258
             ++           F     DK  +   +   P G+ CLI          +     + V
Sbjct: 229 AAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLID---DPSAFDIMLFKRKAV 285

Query: 259 DVIGIFRYRSTWPLCIEFLRSGKI-----------DVKPLITHRFG-FTQKEIEDAFEIS 306
            +     +        +    G++            ++  +T+R        ++ A  + 
Sbjct: 286 SIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALV 345

Query: 307 AQGG 310
             G 
Sbjct: 346 ESGT 349

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 88.5 bits (220), Expect = 4e-20
 Identities = 59/305 (19%), Positives = 104/305 (34%), Gaps = 61/305 (20%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P V+G +  G++E VG+EV     GD V                  Y       + GSP 
Sbjct: 60  PRVLGFDAIGVVESVGNEVTMFNQGDIV------------------Y-------YSGSPD 94

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEE-GAMCEPLSVGVHA----CRRANVGPETNV--- 140
            NGS A   +   +L  K P N+S E+  ++  PL  G+ A         +    N    
Sbjct: 95  QNGSNAEYQLINERLVAKAPKNISAEQAVSL--PL-TGITAYETLFDVFGISRNRNENEG 151

Query: 141 ----MIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVD 196
               +I G+G +G +    A+A+G  R+I T    + +   + +GAD        +   +
Sbjct: 152 KTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGADIV------LNHKE 204

Query: 197 TDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAR 256
           + + + +      +D  F     D      +   +P G +  I     E    L     +
Sbjct: 205 SLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATI--VAFENDQDLNALKPK 262

Query: 257 EVDVIGIFRYRSTWPLCIEFLRSGKI-----------DVKPLITHRFG-FTQKEIEDAFE 304
            +     F +        + ++  +              +P  T      T + I  A +
Sbjct: 263 SLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQ 322

Query: 305 ISAQG 309
           I    
Sbjct: 323 ILESN 327

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 56/311 (18%), Positives = 100/311 (32%), Gaps = 64/311 (20%)

Query: 29  PMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 87
             ++G E +G + E+G   +   ++GD             +L   G              
Sbjct: 80  SNILGLEASGHVAELGPGCQGHWKIGDTA----------MALLPGGGQ------------ 117

Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGA-MCEPLSVGVHAC--RRANVGPETNVMIM- 143
                 A  V  P  L   +P+ ++L + A + E              NV     V+I  
Sbjct: 118 ------AQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLT-AFQLLHLVGNVQAGDYVLIHA 170

Query: 144 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
           G   +G   +   R  GA   ++T    ++L +A  LGA          ED      K  
Sbjct: 171 GLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKK--EDFSEATLKFT 227

Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL---AKTEMTVALTPAAAREVDV 260
              G+G+++  DC+G        +N     G+  L GL            +    +   +
Sbjct: 228 K--GAGVNLILDCIGGS-YWEKNVNCLALDGRWVLYGLMGGGDING-PLFSKLLFKRGSL 283

Query: 261 IG-IFRYRST--------------WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI 305
           I  + R R                 P         ++   P++   +  T  EI++A + 
Sbjct: 284 ITSLLRSRDNKYKQMLVNAFTEQILPH-FSTEGPQRL--LPVLDRIYPVT--EIQEAHKY 338

Query: 306 SAQGGNAIKVM 316
                N  K++
Sbjct: 339 MEANKNIGKIV 349

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 84.1 bits (209), Expect = 7e-19
 Identities = 62/307 (20%), Positives = 105/307 (34%), Gaps = 82/307 (26%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P + G E  G++            G R            +L   G               
Sbjct: 56  PFIPGMEVVGVV-----------EGRRY----------AALVPQGGL------------- 81

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG--VHACRRANVGPETNVMIMG-S 145
                A +V  P      LP+ +S EE A   P+S      A +RA   P   V++   +
Sbjct: 82  -----AERVAVPKGALLPLPEGLSPEEAA-AFPVSFLTAYLALKRAQARPGEKVLVQAAA 135

Query: 146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA 205
           G +G   +  ARA G  R++      ++L++   LGA+E A  +   E            
Sbjct: 136 GALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAEVPERA-KA------- 186

Query: 206 MGSGIDVSFDCVG--FDKTMSTALNATRPGGKVCLIGLAKTEM-TVALTPAAAREVDVIG 262
              G+D+  +  G   ++    +L     GG++  IG A+ E+  +       R + V+G
Sbjct: 187 -WGGLDLVLEVRGKEVEE----SLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLG 241

Query: 263 IF-RYRST------------WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG 309
            +                   P         ++  +P++   F F   E E AF      
Sbjct: 242 FWLTPLLREGALVEEALGFLLPRL-----GREL--RPVVGPVFPFA--EAEAAFRALLDR 292

Query: 310 GNAIKVM 316
           G+  KV+
Sbjct: 293 GHTGKVV 299

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 85.0 bits (210), Expect = 8e-19
 Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 37/210 (17%)

Query: 28  KPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 87
             M +G+E AG++ E GS   +  +  +            +      Y            
Sbjct: 90  ASMPVGNEGAGVVVEAGSSPAAQALMGKT----------VAAIGGAMY------------ 127

Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC--EPLSVGVHACRRANVGPETNVMIMG- 144
                 +     PA  C  LP+  +  +GA     PL+  +       +   + ++    
Sbjct: 128 ------SQYRCIPADQCLVLPEGATPADGASSFVNPLTA-LGMVETMRLEGHSALVHTAA 180

Query: 145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN 204
           +  +G +        G   + I     Q   + +  GA      +        D+ +   
Sbjct: 181 ASNLGQMLNQICLKDGIKLVNIVRKQEQA-DLLKAQGAVHV--CNAASPTFMQDLTEALV 237

Query: 205 AMGSGIDVSFDCVGFDKTMSTALNATRPGG 234
              +G  ++FD  G  K     L       
Sbjct: 238 --STGATIAFDATGGGKLGGQILTCMEAAL 265

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 57/318 (17%), Positives = 103/318 (32%), Gaps = 83/318 (26%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
           P+ +G + +G++ E G +VK  + GD V                           + + P
Sbjct: 95  PLTLGRDVSGVVMECGLDVKYFKPGDEV---------------------------WAAVP 127

Query: 89  T--NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV--------HACRRANVGPET 138
               G+L+  VV         P +++  + A   P  V +                    
Sbjct: 128 PWKQGTLSEFVVVSGNEVSHKPKSLTHTQAA-SLPY-VALTAWSAINKVGGLNDKNCTGK 185

Query: 139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV----STDIE 193
            V+I+G SG +G   +   +A+ A   +          + R LGAD+   V    S  +E
Sbjct: 186 RVLILGASGGVGTFAIQVMKAWDA--HVTAVCSQDASELVRKLGADD---VIDYKSGSVE 240

Query: 194 DVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPA 253
           +                D   D VG   T + A +  +       + L    +       
Sbjct: 241 EQLKS--------LKPFDFILDNVGGS-TETWAPDFLKKWSGATYVTLVTPFLLNMDRLG 291

Query: 254 AAREVDVIGIF-------------RYRSTWPL--------CIEFLRSGKIDVKPLITHRF 292
            A  +   G+               YR  + +          E + +GKI  +P+I   F
Sbjct: 292 IADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKI--RPVIEQTF 349

Query: 293 GFTQKEIEDAFEISAQGG 310
            F+  ++ +AF    +G 
Sbjct: 350 PFS--KVPEAFLKVERGH 365

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 71.7 bits (176), Expect = 4e-14
 Identities = 55/313 (17%), Positives = 101/313 (32%), Gaps = 84/313 (26%)

Query: 29  PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPP 88
              +G E AG++ E G  V  L  GDRV        G                       
Sbjct: 265 VASLGSEGAGVVVETGPGVTGLAPGDRV-------MGMIP-------------------- 297

Query: 89  TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV------HA-CRRANVGPETNVM 141
              +     V   ++  ++P   S    A     SV +      +A    A + P  +++
Sbjct: 298 --KAFGPLAVADHRMVTRIPAGWSFARAA-----SVPIVFLTAYYALVDLAGLRPGESLL 350

Query: 142 I-MGSGPIGLVTLLAARAFGAPRIIIT---------DVDVQRLSIARNLGADETAKVSTD 191
           +   +G +G+  +  AR  GA  +  T         ++  + L+ +R    ++    +T 
Sbjct: 351 VHSAAGGVGMAAIQLARHLGA-EVYATASEDKWQAVELSREHLASSRTCDFEQQFLGATG 409

Query: 192 IEDVDTDVGKIQNAM-GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVAL 250
              VD     + N++ G   D S   +               GG+   +G  KT++   +
Sbjct: 410 GRGVDV----VLNSLAGEFADASLRML-------------PRGGRFLELG--KTDVRDPV 450

Query: 251 TPAAARE------VDVI--GIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDA 302
             A A         D +  G  R        +E      +  +PL    +   Q    +A
Sbjct: 451 EVADAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVL--EPLPVTAWDVRQ--APEA 506

Query: 303 FEISAQGGNAIKV 315
               +Q  +  K+
Sbjct: 507 LRHLSQARHVGKL 519

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 70.0 bits (172), Expect = 9e-14
 Identities = 51/315 (16%), Positives = 96/315 (30%), Gaps = 68/315 (21%)

Query: 29  PMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSP 87
           P  IG E  G +  +G    +   VG  VA                              
Sbjct: 84  PFDIGFEGIGEVVALGLSASARYTVGQAVAYMAP-------------------------- 117

Query: 88  PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPL---SVGVHACRRANVGP-ETNVMIM 143
              GS A   V PA +   +P     E   +        + +       +   +  ++  
Sbjct: 118 ---GSFAEYTVVPASIATPVPSVKP-EYLTLLVSGTTAYISLK--ELGGLSEGKKVLVTA 171

Query: 144 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ 203
            +G  G   +  ++      +I T    ++ +  ++LG D      T  E V T    ++
Sbjct: 172 AAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKT--EPVGT---VLK 225

Query: 204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA---KTEMTVALTPAAAREVDV 260
                G+DV ++ VG       A++A    G++ +IG     +T   ++   A      +
Sbjct: 226 QEYPEGVDVVYESVGGA-MFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKL 284

Query: 261 IG---------IFRYRSTWPLCIE----FLRSGKIDVK------PLITHRFGFTQKEIED 301
           +          +  Y S +   +        SG +  +             G   + I  
Sbjct: 285 LKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGL--ESIFR 342

Query: 302 AFEISAQGGNAIKVM 316
           A      G N  K++
Sbjct: 343 AVNYMYMGKNTGKIV 357

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 46/250 (18%)

Query: 25  IVKK-PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF 83
           IVK  P V G + AG++    S+      GD V     I+ G     + G         F
Sbjct: 56  IVKTYPFVPGIDLAGVVVS--SQHPRFREGDEV-----IATG----YEIG------VTHF 98

Query: 84  FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEE----GAMCEPLSVGVHACRRANVGPETN 139
                  G  +       +    LP  ++L+E    G      ++ +H      + PE  
Sbjct: 99  -------GGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERG 151

Query: 140 VMIM--GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDT 197
            +++   +G +G + +      G      T          R LGA E        EDV  
Sbjct: 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTG-KAAEHDYLRVLGAKEV----LAREDVMA 206

Query: 198 DVGKIQNAMGSGI-DVSFDCVGFDKTMSTALNATRPGGKVCLIGLA---KTEMTVALTPA 253
           +  +    +       + D VG  +T++T L+  R GG V + GL    +   TV   P 
Sbjct: 207 ERIR---PLDKQRWAAAVDPVG-GRTLATVLSRMRYGGAVAVSGLTGGAEVPTTVH--PF 260

Query: 254 AAREVDVIGI 263
             R V ++GI
Sbjct: 261 ILRGVSLLGI 270

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 56/251 (22%), Positives = 94/251 (37%), Gaps = 48/251 (19%)

Query: 25  IVKK-PMVIGHECAGIIEEVGSEVKSLEVGDRVALEP-GISCGHCSLCKAGSYNLCPEMR 82
           IV++ P+++G + AG +    S       GD V      +                    
Sbjct: 57  IVREYPLILGIDAAGTVVS--SNDPRFAEGDEVIATSYELGVSR---------------- 98

Query: 83  FFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEE----GAMCEPLSVGVHACRRANVGPE- 137
                  +G L+     P      LP N+SL+E    G      ++ VH   +  + PE 
Sbjct: 99  -------DGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEK 151

Query: 138 TNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVD 196
            +V++ G+ G +G + +      G   +  T  + +     + LGA E        EDV 
Sbjct: 152 GSVLVTGATGGVGGIAVSMLNKRGYDVVAST-GNREAADYLKQLGASEV----ISREDVY 206

Query: 197 TDVGKIQNAMGSGI-DVSFDCVGFDKTMSTALNATRPGGKVCLIGLA---KTEMTVALTP 252
               K   A+       + D VG  K +++ L+  + GG V + GL    +   TV   P
Sbjct: 207 DGTLK---ALSKQQWQGAVDPVG-GKQLASLLSKIQYGGSVAVSGLTGGGEVPATVY--P 260

Query: 253 AAAREVDVIGI 263
              R V ++GI
Sbjct: 261 FILRGVSLLGI 271

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 50/250 (20%), Positives = 80/250 (32%), Gaps = 48/250 (19%)

Query: 25  IVKK-PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRF 83
           I++  PM+ G + AG +    SE      G  V     +  G       G      E  +
Sbjct: 53  IIRHFPMIPGIDFAGTVHA--SEDPRFHAGQEV-----LLTG----WGVG------ENHW 95

Query: 84  FGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEE----GAMCEPLSVGVHACRRANVGPETN 139
                  G LA +          LP  +S       G       + V A   A + P+  
Sbjct: 96  -------GGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDG 148

Query: 140 VMIM--GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDT 197
            +++   SG +G   +      G     ++          ++LGA+           +  
Sbjct: 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSG-RESTHGYLKSLGANRI---------LSR 198

Query: 198 DVGKIQNAMGSGI-DVSFDCVGFDKTMSTALNATRPGGKVCLIGLA---KTEMTVALTPA 253
           D       +   +   + D VG DK ++  L     GG V   GLA       TV   P 
Sbjct: 199 DEFAESRPLEKQLWAGAIDTVG-DKVLAKVLAQMNYGGCVAACGLAGGFALPTTVM--PF 255

Query: 254 AAREVDVIGI 263
             R V + G+
Sbjct: 256 ILRNVRLQGV 265

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 10/110 (9%)

Query: 132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD 191
                    + +G GP+ L  +L +  +G  R+ + +++     ++R +           
Sbjct: 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIE------GLG 170

Query: 192 IEDVDTDVGKIQNAMGSGIDVSFD---CVGFDKTMSTALNATRPGGKVCL 238
           ++ V+   G      G   DV           +             ++  
Sbjct: 171 VDGVNVITGDETVIDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIY 220

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 56/304 (18%), Positives = 93/304 (30%), Gaps = 70/304 (23%)

Query: 31   VIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTN 90
            + G                   G RV                        M         
Sbjct: 1588 IPGKWLTRDCMLGMEFSGRDASGRRV------------------------MGMV----PA 1619

Query: 91   GSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV------HA-CRRANVGPETNVMI- 142
              LA  V+      +++P   +LEE A     SV +      ++   R  + P  +V+I 
Sbjct: 1620 EGLATSVLLLQHATWEVPSTWTLEEAA-----SVPIVYTTAYYSLVVRGRMQPGESVLIH 1674

Query: 143  MGSGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGADETAKVS---TDIEDVDTD 198
             GSG +G   +  A + G           +R    AR    DET   +   T  E     
Sbjct: 1675 SGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLR 1734

Query: 199  VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT--------EMTVAL 250
                    G G+D+  + +  +K +  ++      G    + + K          M V L
Sbjct: 1735 HTA-----GKGVDLVLNSLAEEK-LQASVRCLAQHG--RFLEIGKFDLSNNHALGMAVFL 1786

Query: 251  TPAAAREVDVIGIF-----RYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI 305
                   + +  +F      ++    L    ++ G   V+PL    F  T  ++E AF  
Sbjct: 1787 KNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGV--VQPLKCTVFPRT--KVEAAFRY 1842

Query: 306  SAQG 309
             AQG
Sbjct: 1843 MAQG 1846

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.97
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.86
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.26
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.03
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.88
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.69
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.64
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.64
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.63
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.57
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.33
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.22
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.19
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.12
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.08
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.07
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.06
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.98
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.97
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.89
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.82
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.72
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.7
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.69
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.69
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.66
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.65
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.6
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.6
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.59
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.51
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.43
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.42
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.41
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.33
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.32
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.3
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.3
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.28
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.23
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.22
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.22
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.22
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.2
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.13
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.13
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.11
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.1
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.08
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.07
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.07
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.05
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.03
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.02
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.01
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.97
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.97
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.96
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.96
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.96
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.94
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.93
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.93
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.93
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.92
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.91
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.9
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.89
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.88
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.87
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.86
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.84
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.84
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.84
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.82
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.81
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.8
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.79
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.79
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.78
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.77
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.77
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.77
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.76
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.75
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.75
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.75
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.74
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.73
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.73
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.73
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.72
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.72
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.71
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.71
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.7
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.7
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.69
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.68
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.68
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.67
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.67
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.66
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.66
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.66
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.65
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.65
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.65
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.65
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.64
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.63
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.62
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.59
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.59
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.57
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.57
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.56
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.56
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.56
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.53
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.53
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.52
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.52
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.52
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.52
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.52
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.52
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.51
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.51
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.51
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.51
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.5
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.5
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.5
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.5
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.5
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.5
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.5
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.5
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.49
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.49
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.49
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.48
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.48
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.46
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.46
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.46
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.45
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.45
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.45
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.45
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.44
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.44
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.44
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.44
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.44
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.43
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.43
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.42
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.42
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.42
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.41
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.4
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.39
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.38
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.38
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.38
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.37
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.37
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.37
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.36
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.36
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.35
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.35
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.34
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.34
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.34
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.34
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.33
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.33
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.32
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.32
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.32
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.32
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.31
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.31
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.31
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.3
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.3
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.29
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.28
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.28
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.27
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.27
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.26
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.25
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.25
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.24
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.24
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.24
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.23
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.23
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.22
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.22
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.21
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.21
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.21
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.2
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.19
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.19
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.19
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.19
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.19
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.19
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.16
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.15
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	96.15
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.15
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.15
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.15
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.14
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.14
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.14
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.12
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.12
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.11
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.11
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.1
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.1
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.1
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.09
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.09
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.08
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.08
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.08
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.07
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.07
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.06
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.06
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.06
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.05
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.05
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.04
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	96.04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.03
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.03
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.02
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.02
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.01
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.01
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.0
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.0
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	95.99
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.99
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.98
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	95.98
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	95.97
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.97
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	95.96
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.95
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	95.95
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	95.95
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	95.94
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	95.93
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	95.93
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	95.93
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	95.93
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	95.92
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.92
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.91
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.91
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.91
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.9
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.89
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.89
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	95.89
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.89
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	95.88
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	95.87
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.87
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.86
1xxl_A	239	YCGJ protein; structural genomics, protein structu	95.86
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	95.85
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	95.85
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	95.84
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.84
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.83
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.82
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.82
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.82
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.81
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.81
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.8
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	95.8
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	95.8
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	95.8
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	95.79
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	95.79
1spx_A	278	Short-chain reductase family member (5L265); paral	95.79
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.78
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	95.78
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.78
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	95.78
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.77
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.76
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.76
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.75
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.75
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	95.75
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.74
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	95.74
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.74
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	95.74
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	95.74
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.73
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.73
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	95.71
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.7
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	95.7
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.69
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.68
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.68
2o07_A	304	Spermidine synthase; structural genomics, structur	95.67
2pt6_A	321	Spermidine synthase; transferase, structural genom	95.66
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.66
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.65
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	95.65
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	95.64
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	95.64
2i7c_A	283	Spermidine synthase; transferase, structural genom	95.64
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	95.63
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.62
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.62
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.62
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.62
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.62
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	95.61
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.6
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.6
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.6
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.59
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.59
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	95.58
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	95.56
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.56
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.55
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	95.55
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	95.54
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	95.53
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	95.53
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.53
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	95.52
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.51
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.5
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	95.49
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	95.48
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.47
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.46
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.46
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	95.44
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	95.44
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.44
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.43
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	95.39
4had_A	350	Probable oxidoreductase protein; structural genomi	95.38
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	95.38
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.36
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.35
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	95.34
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	95.32
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	95.31
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.29
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.28
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.27
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.26
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.26
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.26
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	95.25
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.24
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.23
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	95.22
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	95.21
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.2
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.19
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	95.18
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.18
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.18
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.16
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	95.16
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	95.15
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.15
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.13
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	95.13
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.12
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	95.11
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	95.11
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.08
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	95.08
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.07
3i9f_A	170	Putative type 11 methyltransferase; structural gen	95.06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.05
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	95.05
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.04
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	95.02
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.02
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.01
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.0
2esr_A	177	Methyltransferase; structural genomics, hypothetic	94.99
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	94.98
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	94.96
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	94.96
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	94.95
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	94.95
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.94
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	94.93
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	94.93
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	94.92
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	94.89
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	94.88
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	94.87
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	94.86
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.85
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.85
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	94.84
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.83
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	94.82
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	94.8
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	94.79
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	94.78
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	94.78
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	94.77

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=1.7e-56  Score=400.37  Aligned_cols=313  Identities=37%  Similarity=0.627  Sum_probs=280.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++++++...+....++|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|.+|.+++|++
T Consensus        45 Vkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~  124 (363)
T 3m6i_A           45 VAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCER  124 (363)
T ss_dssp             EEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTT
T ss_pred             EEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCC
Confidence            68999999999999998655455556789999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+.+....+|+|+||+.++++.++++|+ +++++||++.+++|||++++++++++|++|||+|+|++|++++|+|+.+|
T Consensus       125 ~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G  203 (363)
T 3m6i_A          125 VDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAG  203 (363)
T ss_dssp             CEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHHHHHHHHHHHHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTT
T ss_pred             ccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHHhhhHHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            98887766799999999999999999999 99999998888999999998899999999999999999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCC---CCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVST---DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      +++|++++++++++++++++ ++.++++..   ..+++.+.+++++  .+.++|+|||++|++..++.++++|+++|+++
T Consensus       204 a~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t--~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv  280 (363)
T 3m6i_A          204 ACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESF--GGIEPAVALECTGVESSIAAAIWAVKFGGKVF  280 (363)
T ss_dssp             CCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHT--SSCCCSEEEECSCCHHHHHHHHHHSCTTCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHh--CCCCCCEEEECCCChHHHHHHHHHhcCCCEEE
Confidence            96699999999999999999 777666542   2345555555554  36789999999999878899999999999999


Q ss_pred             EecccCCcccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcC-CCceEEE
Q 020928          238 LIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG-GNAIKVM  316 (319)
Q Consensus       238 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvv  316 (319)
                      .+|.......++...+.++++++.+++.+.+.++++++++++|++++.+.++++|++  +++++|++.++++ ...+|++
T Consensus       281 ~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l--~~~~~A~~~~~~~~~~~~Kvv  358 (363)
T 3m6i_A          281 VIGVGKNEIQIPFMRASVREVDLQFQYRYCNTWPRAIRLVENGLVDLTRLVTHRFPL--EDALKAFETASDPKTGAIKVQ  358 (363)
T ss_dssp             ECCCCCSCCCCCHHHHHHHTCEEEECCSCSSCHHHHHHHHHTTSSCCGGGEEEEEEG--GGHHHHHHHHHCGGGCCSEEE
T ss_pred             EEccCCCCccccHHHHHhcCcEEEEccCCHHHHHHHHHHHHhCCCChHHceeeeeeH--HHHHHHHHHHhccCCCeEEEE
Confidence            999766656677778889999999998878889999999999999888899999999  9999999999987 6788999


Q ss_pred             EeC
Q 020928          317 FNL  319 (319)
Q Consensus       317 i~~  319 (319)
                      +++
T Consensus       359 i~~  361 (363)
T 3m6i_A          359 IQS  361 (363)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            974

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1e-55  Score=393.94  Aligned_cols=313  Identities=45%  Similarity=0.798  Sum_probs=275.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++++++...+.+...+|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|.+|++++|++
T Consensus        36 Vkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~  115 (356)
T 1pl8_A           36 LRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPS  115 (356)
T ss_dssp             EEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTT
T ss_pred             EEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCCCCCCCEEEEeccCCCCCChHHHCcCcccCCC
Confidence            68999999999999987543232334679999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+++.....|+|+||+.++++.++++|+++++++||++.++++||++++++++++|++|||+|+|++|++++|+|+.+|
T Consensus       116 ~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G  195 (356)
T 1pl8_A          116 IFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG  195 (356)
T ss_dssp             CEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             ccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            87776545689999999999999999999999999998888999999998899999999999999999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCC-CcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTD-IEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +++|++++++++++++++++|++.++++... ..++.+.+.+++   +.++|+|||++|++..++.++++|+++|+++.+
T Consensus       196 a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~---~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          196 AAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQL---GCKPEVTIECTGAEASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             CSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHH---TSCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHh---CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEE
Confidence            9789999999999999999999998876421 134444554443   368999999999877789999999999999999


Q ss_pred             cccCCcccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          240 GLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       240 g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      |.......++...+..+++++.++..+...++++++++++|++++.+.++++|++  +++++|++.++++ ..+|+|+++
T Consensus       273 G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l--~~~~~A~~~~~~~-~~gKvvi~~  349 (356)
T 1pl8_A          273 GLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPL--EKALEAFETFKKG-LGLKIMLKC  349 (356)
T ss_dssp             SCCCSCCCCCHHHHHHTTCEEEECCSCSSCHHHHHHHHHTTSCCCGGGEEEEEEG--GGHHHHHHHHHTT-CCSEEEEEC
T ss_pred             ecCCCCCccCHHHHHhcceEEEEecccHHHHHHHHHHHHcCCCChHHheEEEecH--HHHHHHHHHHhCC-CceEEEEeC
Confidence            9755445566677889999999988777789999999999999888888899999  9999999999988 889999974

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5e-55  Score=389.12  Aligned_cols=315  Identities=46%  Similarity=0.826  Sum_probs=275.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++.+++...+.+..++|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|.+|++++|++
T Consensus        33 Vkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~  112 (352)
T 1e3j_A           33 LQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPD  112 (352)
T ss_dssp             EEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTT
T ss_pred             EEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCCChhhhCcCcccCCC
Confidence            68999999999999887543333334679999999999999999999999999999999888999999999999999999


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+++.....|+|+||+.++++.++++|+++++++||++.++++||++++.+++++|++|||+|+|++|++++|+|+.+|
T Consensus       113 ~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G  192 (352)
T 1e3j_A          113 LTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG  192 (352)
T ss_dssp             CEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            88776655689999999999999999999999999998888999999998899999999999999999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhh-cCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA-MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~-~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      + +|++++++++++++++++|++.++++.. ..++.+.+.++... .+.++|++||++|++..++.++++|+++|+++.+
T Consensus       193 a-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~-~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          193 A-FVVCTARSPRRLEVAKNCGADVTLVVDP-AKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             C-EEEEEESCHHHHHHHHHTTCSEEEECCT-TTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred             C-EEEEEcCCHHHHHHHHHhCCCEEEcCcc-cccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            9 5899999999999999999999888642 13555555544310 1468999999999877789999999999999999


Q ss_pred             cccCCcccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC-CceEEEEe
Q 020928          240 GLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG-NAIKVMFN  318 (319)
Q Consensus       240 g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~  318 (319)
                      |.......++...+..+++++.++..+...++++++++++|++++.+.++++|++  +++++|++.+++++ ..+|+|++
T Consensus       271 G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l--~~~~~A~~~~~~~~~~~~Kvvi~  348 (352)
T 1e3j_A          271 GMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMVASGRCNVKQLVTHSFKL--EQTVDAFEAARKKADNTIKVMIS  348 (352)
T ss_dssp             SCCSSCCCCCHHHHHTTTCEEEECCSCSSCHHHHHHHHHTTSCCCGGGEEEEEEG--GGHHHHHHHHHHCCTTCSEEEEE
T ss_pred             ecCCCCccccHHHHHhcCcEEEEeccchHHHHHHHHHHHcCCCChHHheeEEecH--HHHHHHHHHHhcCCCCceEEEEe
Confidence            9755444566677889999999988777789999999999999888888899999  99999999999887 68999997


Q ss_pred             C
Q 020928          319 L  319 (319)
Q Consensus       319 ~  319 (319)
                      +
T Consensus       349 ~  349 (352)
T 1e3j_A          349 C  349 (352)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=3.7e-54  Score=382.95  Aligned_cols=307  Identities=28%  Similarity=0.476  Sum_probs=273.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++.+.|..    +..+|+++|||++|+|+++|++|++|++||||++.+..+|+.|.+|..|.+++|+.
T Consensus        30 Vkv~a~gi~~sD~~~~~g~~----~~~~P~i~G~E~~G~V~~vG~~V~~~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~  105 (346)
T 4a2c_A           30 VKIASSGLCGSDLPRIFKNG----AHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAK  105 (346)
T ss_dssp             EEEEEEECCTTHHHHHHSSC----SSSSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCSS
T ss_pred             EEEEEEEECHHHHHHHcCCC----CCCCCccccEEEEEEEEEECCCcccccCCCeEEeeeccCCCCcccccCCccccCCC
Confidence            68999999999999887743    45689999999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+++. ..+|+|+||+.++++.++++|+++++++||+++++++++++++..+++++++|||+|+|++|++++|+|+++|
T Consensus       106 ~~~~g~-~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G  184 (346)
T 4a2c_A          106 YDFIGS-RRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALG  184 (346)
T ss_dssp             CEEBTT-TBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHHHHHHHHHHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             cccccC-CCCcccccccccchheEEECCCCCCHHHHHhchHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHHcC
Confidence            887765 4689999999999999999999999999999988888888888899999999999999999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +.++++++++++|+++++++|+++++++..  .++.+.++.+++  +.++|++||++|++..++.++++++++|+++.+|
T Consensus       185 ~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~--~~~~~~~~~~~~--~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          185 AKSVTAIDISSEKLALAKSFGAMQTFNSSE--MSAPQMQSVLRE--LRFNQLILETAGVPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             CSEEEEEESCHHHHHHHHHTTCSEEEETTT--SCHHHHHHHHGG--GCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECC
T ss_pred             CcEEEEEechHHHHHHHHHcCCeEEEeCCC--CCHHHHHHhhcc--cCCcccccccccccchhhhhhheecCCeEEEEEe
Confidence            988899999999999999999999998653  455556655553  6789999999999888999999999999999999


Q ss_pred             ccCCccc---ccchHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCC
Q 020928          241 LAKTEMT---VALTPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGN  311 (319)
Q Consensus       241 ~~~~~~~---~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  311 (319)
                      ....+..   .+...+..+++++.|++..      .++++++++++++|++++.++++++|+|  +++++|++.+++++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l--~~~~~A~~~l~~~~~  338 (346)
T 4a2c_A          261 TLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSF--ESFAQAVRDIARNAM  338 (346)
T ss_dssp             CCSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECH--HHHHHHHHHHTTSCC
T ss_pred             ccCCCccccccCHHHHhhceeEEEEEeccccCcchHHHHHHHHHHHHcCCCCCCccEeEEEeH--HHHHHHHHHHHcCCC
Confidence            7655432   3345577899999998653      3468899999999999988999999999  999999999999999


Q ss_pred             ceEEEEe
Q 020928          312 AIKVMFN  318 (319)
Q Consensus       312 ~gkvvi~  318 (319)
                      .||+||+
T Consensus       339 ~GKvVl~  345 (346)
T 4a2c_A          339 PGKVLLI  345 (346)
T ss_dssp             CSEEEEC
T ss_pred             ceEEEEE
Confidence            9999986

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=9.6e-55  Score=389.21  Aligned_cols=309  Identities=27%  Similarity=0.508  Sum_probs=276.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|..    +.++|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|..|.+++|++
T Consensus        52 Vkv~a~gi~~~D~~~~~G~~----~~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~  127 (370)
T 4ej6_A           52 VKVEACGICGTDRHLLHGEF----PSTPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRN  127 (370)
T ss_dssp             EEEEEEECCHHHHHHHTTSS----CCCSSEECCCSEEEEEEEECTTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTT
T ss_pred             EEEEEEeecHHHHHHHcCCC----CCCCCeecCcceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCC
Confidence            68999999999999998753    45789999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+++.. .+|+|+||+.++++.++++|+++++++||++.++++||++++.+++++|++|||+|+|++|++++|+|+.+|
T Consensus       128 ~~~~g~~-~~G~~aey~~v~~~~~~~~P~~~~~~~aal~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G  206 (370)
T 4ej6_A          128 LRAIGIH-RDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAG  206 (370)
T ss_dssp             CEEBTTT-BCCSSBSEEEEEGGGEEEECTTSCTTGGGGHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             ccccCCC-CCCcceEEEEEchhhEEECCCCCCHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            8877653 689999999999999999999999999997789999999998899999999999999999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +++|+++++++++.++++++|++.++++.  .+++.+.+.+.....++++|+|||++|+...+..++++|+++|+++.+|
T Consensus       207 a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~--~~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          207 ATTVILSTRQATKRRLAEEVGATATVDPS--AGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             CSEEEEECSCHHHHHHHHHHTCSEEECTT--SSCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHcCCCEEECCC--CcCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEe
Confidence            98899999999999999999999998864  3466666655221234489999999998778999999999999999999


Q ss_pred             ccCC--cccccchHHHhcCcEEEEeeccCCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC-CceEEEE
Q 020928          241 LAKT--EMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG-NAIKVMF  317 (319)
Q Consensus       241 ~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi  317 (319)
                      ....  ...++...++.+++++.+++.....++++++++++|++++.++++++|++  +++++|++.+.+++ ..+|+++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l--~~~~~A~~~~~~~~~~~~kvv~  362 (370)
T 4ej6_A          285 VLPQGEKVEIEPFDILFRELRVLGSFINPFVHRRAADLVATGAIEIDRMISRRISL--DEAPDVISNPAAAGEVKVLVIP  362 (370)
T ss_dssp             CCCTTCCCCCCHHHHHHTTCEEEECCSCTTCHHHHHHHHHTTCSCCGGGEEEEECG--GGHHHHHHSCCCTTCSEEEECC
T ss_pred             ccCCCCccccCHHHHHhCCcEEEEeccChHHHHHHHHHHHcCCCChhHcEEEEEEH--HHHHHHHHHHHcCCCCeEEEEE
Confidence            7544  44666777889999999998888889999999999999988999999999  99999999998875 5578887


Q ss_pred             e
Q 020928          318 N  318 (319)
Q Consensus       318 ~  318 (319)
                      +
T Consensus       363 ~  363 (370)
T 4ej6_A          363 S  363 (370)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=1.4e-53  Score=379.19  Aligned_cols=310  Identities=33%  Similarity=0.582  Sum_probs=258.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|........++|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|.+|++++|++
T Consensus        34 Vkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~  113 (348)
T 2d8a_A           34 IKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQN  113 (348)
T ss_dssp             EEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSCCC------------
T ss_pred             EEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhhhCcCcccCCC
Confidence            68999999999999998732110124679999999999999999999999999999999989999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG  160 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g  160 (319)
                      ..+++. ...|+|+||+.++++.++++|+++++++||++++++|||++++++++ +|++|||+|+|++|++++|+|+..|
T Consensus       114 ~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~ta~~~l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~G  191 (348)
T 2d8a_A          114 TKIFGV-DTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPI-SGKSVLITGAGPLGLLGIAVAKASG  191 (348)
T ss_dssp             CEETTT-SSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHHHHHHHHHHHTTSCC-TTCCEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCeecC-CCCCcCcceEEeChHHeEECCCCCCHHHHHhhhHHHHHHHHHHhcCC-CCCEEEEECCCHHHHHHHHHHHHcC
Confidence            776654 46799999999999999999999999999988889999999977889 9999999999999999999999999


Q ss_pred             CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          161 APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       161 ~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +++|+++++++++.++++++|++.++++..  +++.+.+.+++  .+.++|++||++|++..++.++++++++|+++.+|
T Consensus       192 a~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~v~~~~--~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          192 AYPVIVSEPSDFRRELAKKVGADYVINPFE--EDVVKEVMDIT--DGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             CCSEEEECSCHHHHHHHHHHTCSEEECTTT--SCHHHHHHHHT--TTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHhCCCEEECCCC--cCHHHHHHHHc--CCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence            866888999999999999999999887643  46666666554  35689999999998778899999999999999999


Q ss_pred             ccCCcccccc-hHHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCceeeeec-CChhhHHHHHHHHhcCCCceEEE
Q 020928          241 LAKTEMTVAL-TPAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITHRFG-FTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       241 ~~~~~~~~~~-~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      .......++. ..+..+++++.++...  .+.++++++++++|++++.+.++++|+ +  +++++|++.+++ ...+|+|
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl--~~~~~A~~~~~~-~~~gKvv  344 (348)
T 2d8a_A          268 LYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGF--DKYEEAFELMRA-GKTGKVV  344 (348)
T ss_dssp             CCSSCCCCCHHHHTTTTTCEEEECCCCCSHHHHHHHHHHHHHTCCCCTTTEEEEEESS--TTHHHHHHHHHT-TCCSEEE
T ss_pred             cCCCCcccCchHHHHhCCcEEEEecCCCcHHHHHHHHHHHHcCCCChHHhheeeCCCH--HHHHHHHHHHhC-CCceEEE
Confidence            7654445555 5677899999997654  356889999999999988899989999 9  999999999977 5789999


Q ss_pred             EeC
Q 020928          317 FNL  319 (319)
Q Consensus       317 i~~  319 (319)
                      +++
T Consensus       345 i~~  347 (348)
T 2d8a_A          345 FML  347 (348)
T ss_dssp             EEC
T ss_pred             Eee
Confidence            975

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=8e-53  Score=378.26  Aligned_cols=309  Identities=26%  Similarity=0.408  Sum_probs=265.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|...   ..++|.++|||++|+|+++|++|++|++||||++.+..+|++|++|.+|++++|++
T Consensus        38 Vkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~  114 (378)
T 3uko_A           38 IKILYTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGK  114 (378)
T ss_dssp             EEEEEEEECHHHHHHHTTCCT---TCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCS
T ss_pred             EEEEEeecCHHHHHHhcCCCC---CCCCCccCCccceEEEEEeCCCCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcC
Confidence            689999999999999988632   34689999999999999999999999999999999999999999999999999998


Q ss_pred             cccc---cC------------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCC
Q 020928           81 MRFF---GS------------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPE  137 (319)
Q Consensus        81 ~~~~---~~------------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~  137 (319)
                      ....   +.                  ....|+|+||+.++++.++++|+++++++||+++ ++.|||+++ +.+++++|
T Consensus       115 ~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g  194 (378)
T 3uko_A          115 VRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPG  194 (378)
T ss_dssp             SHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTT
T ss_pred             cccccccccccccCccccccCCcccccccCCcceEeEEEechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCC
Confidence            6431   10                  1123799999999999999999999999999986 788999988 55899999


Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      ++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|+++++++.....++.+.+++++   ++++|+||||+
T Consensus       195 ~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~---~gg~D~vid~~  271 (378)
T 3uko_A          195 SNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLT---DGGVDYSFECI  271 (378)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHT---TSCBSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhc---CCCCCEEEECC
Confidence            999999999999999999999999779999999999999999999999987543567777776665   34999999999


Q ss_pred             CChHHHHHHHHhhcCC-CEEEEecccCCc--ccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceee
Q 020928          218 GFDKTMSTALNATRPG-GKVCLIGLAKTE--MTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITH  290 (319)
Q Consensus       218 g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~  290 (319)
                      |++..++.++++++++ |+++.+|.....  ..+....+. +++++.++...    .++++++++++++|++++.+++++
T Consensus       272 g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~  350 (378)
T 3uko_A          272 GNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITH  350 (378)
T ss_dssp             CCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEE
T ss_pred             CCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHh-cCcEEEEEEecCCCchHHHHHHHHHHHcCCCChhHheee
Confidence            9977899999999996 999999975432  233333344 48899987643    456889999999999988889999


Q ss_pred             eecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          291 RFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       291 ~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +|++  +++++|++.+++++.. |+|+++
T Consensus       351 ~~~l--~~~~~A~~~~~~g~~~-Kvvi~~  376 (378)
T 3uko_A          351 NLTL--GEINKAFDLLHEGTCL-RCVLDT  376 (378)
T ss_dssp             EEEG--GGHHHHHHHTTCTTCS-EEEEET
T ss_pred             EeeH--HHHHHHHHHHHCCCce-EEEEec
Confidence            9999  9999999999988765 999975

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1e-53  Score=379.39  Aligned_cols=308  Identities=31%  Similarity=0.560  Sum_probs=270.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|.........+|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|++|++++|++
T Consensus        30 Vkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~  109 (343)
T 2dq4_A           30 VRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLN  109 (343)
T ss_dssp             EEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSCTTCEEEECCEECCSCSHHHHTTCGGGCTT
T ss_pred             EEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCCCCCEEEECCCCCCCCChhhhCcCcccCCC
Confidence            68999999999999998753211124679999999999999999999999999999999989999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHH-hcCCCCCCeEEEECCCHHHHHHHHHHHHc
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACR-RANVGPETNVMIMGSGPIGLVTLLAARAF  159 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~-~~~~~~~~~vlI~G~g~vG~~ai~la~~~  159 (319)
                      ..+++. ...|+|+||+.++++.++++|+++++++||++.++++||++++ .+++ +|++|||+|+|++|++++|+|+.+
T Consensus       110 ~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~  187 (343)
T 2dq4_A          110 TQILGV-DRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRAS  187 (343)
T ss_dssp             CEEBTT-TBCCSSBSEEEEEGGGEEEECTTSCHHHHTTHHHHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHT
T ss_pred             cceecC-CCCCcceeEEEEchHHeEECCCCCCHHHHHhhhHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHc
Confidence            876653 3579999999999999999999999999999888999999998 7889 999999999999999999999999


Q ss_pred             CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          160 GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       160 g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      |+++|++++++++++++++++ ++.++++..  +++.+.+.+++   +.++|++||++|++..++.++++|+++|+++.+
T Consensus       188 Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~--~~~~~~~~~~~---~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          188 GAGPILVSDPNPYRLAFARPY-ADRLVNPLE--EDLLEVVRRVT---GSGVEVLLEFSGNEAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             TCCSEEEECSCHHHHGGGTTT-CSEEECTTT--SCHHHHHHHHH---SSCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHh-HHhccCcCc--cCHHHHHHHhc---CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            996688999999999999999 999887643  46666666553   568999999999866889999999999999999


Q ss_pred             cccCCcccccc-hHHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEE
Q 020928          240 GLAKTEMTVAL-TPAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVM  316 (319)
Q Consensus       240 g~~~~~~~~~~-~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv  316 (319)
                      |.......++. ..++.+++++.++...  .+.++++++++++|++++.+.++++|++  +++++|++.+++++. ||+|
T Consensus       262 g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l--~~~~~A~~~~~~~~~-gKvv  338 (343)
T 2dq4_A          262 GIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPL--SRYREAFGLLASGQA-VKVI  338 (343)
T ss_dssp             CCCSSCEEECHHHHTGGGTCEEEECCSCCTTHHHHHHHHHHHHTSSCCGGGEEEEEEG--GGHHHHHHHHHHSSC-SEEE
T ss_pred             ecCCCCceeCcHHHHHhCceEEEEeecCCCHHHHHHHHHHHHcCCCChHHheeEEecH--HHHHHHHHHHhcCCc-eEEE
Confidence            97655455566 6678899999998654  5568999999999998888888899999  999999999998876 9999


Q ss_pred             EeC
Q 020928          317 FNL  319 (319)
Q Consensus       317 i~~  319 (319)
                      +++
T Consensus       339 ~~~  341 (343)
T 2dq4_A          339 LDP  341 (343)
T ss_dssp             EET
T ss_pred             Eee
Confidence            974

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=7.9e-52  Score=371.65  Aligned_cols=308  Identities=26%  Similarity=0.441  Sum_probs=263.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|. .   ..++|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|.+|++++|++
T Consensus        38 Vkv~a~gi~~~D~~~~~g~-~---~~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~  113 (376)
T 1e3i_A           38 IQVIATCVCPTDINATDPK-K---KALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGK  113 (376)
T ss_dssp             EEEEEEECCHHHHHTTCTT-S---CCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTT
T ss_pred             EEEeEEeEchhhHHHhcCC-C---CCCCCcccCccccEEEEEECCCCccCCCCCEEEECCcCCCCCCccccCCCcccCcC
Confidence            6899999999999999874 1   23679999999999999999999999999999999989999999999999999987


Q ss_pred             cc----c---ccCC-----------------CCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCC
Q 020928           81 MR----F---FGSP-----------------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANV  134 (319)
Q Consensus        81 ~~----~---~~~~-----------------~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~  134 (319)
                      ..    +   .+..                 ...|+|+||+.++++.++++|+++++++||+++ ++.|||+++ +.+++
T Consensus       114 ~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~  193 (376)
T 1e3i_A          114 LRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKV  193 (376)
T ss_dssp             CCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCC
T ss_pred             cCccccccccccccccCccccccCCcccccccCCccceeEEEeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCC
Confidence            53    1   0110                 125999999999999999999999999999886 789999998 45899


Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      ++|++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|+++++++....+++.+.+.+++   ++++|+||
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~---~~g~Dvvi  270 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELT---AGGVDYSL  270 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHH---TSCBSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHh---CCCccEEE
Confidence            999999999999999999999999999779999999999999999999999886532346666666654   24899999


Q ss_pred             EccCChHHHHHHHHhhcCC-CEEEEecccCCcccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCcee
Q 020928          215 DCVGFDKTMSTALNATRPG-GKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLIT  289 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~  289 (319)
                      |++|++..++.++++++++ |+++.+|.......++...+..++ ++.++...    .++++++++++++|++++.+.++
T Consensus       271 d~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~  349 (376)
T 1e3i_A          271 DCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGR-SINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVT  349 (376)
T ss_dssp             ESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEE
T ss_pred             ECCCCHHHHHHHHHHhhcCCCEEEEECCCCCccccCHHHhhccC-eEEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEe
Confidence            9999877889999999999 999999975444445555666777 88887643    34688999999999998778888


Q ss_pred             eeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          290 HRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       290 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++|++  +++++|++.+++++ .+|+++++
T Consensus       350 ~~~~l--~~~~~A~~~~~~~~-~~Kvvi~~  376 (376)
T 1e3i_A          350 HALPF--ESINDAIDLMKEGK-SIRTILTF  376 (376)
T ss_dssp             EEEEG--GGHHHHHHHHHTTC-CSEEEEEC
T ss_pred             eeecH--HHHHHHHHHHhcCC-cceEEEeC
Confidence            99999  99999999998876 57999875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=1.2e-51  Score=370.19  Aligned_cols=307  Identities=22%  Similarity=0.363  Sum_probs=262.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|..    +..+|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|++|++++|++
T Consensus        39 Vkv~a~gi~~~D~~~~~g~~----~~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~  114 (373)
T 1p0f_A           39 IKILASGICGSDSSVLKEII----PSKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEK  114 (373)
T ss_dssp             EEEEEEECCHHHHHHHTTSS----CCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTT
T ss_pred             EEEeEEeecchhHHHhcCCC----CCCCCcccCcCceEEEEEECCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcC
Confidence            68999999999999998753    24679999999999999999999999999999999989999999999999999987


Q ss_pred             cccc---cCC-----------------CCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCC
Q 020928           81 MRFF---GSP-----------------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPET  138 (319)
Q Consensus        81 ~~~~---~~~-----------------~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~  138 (319)
                      ....   +..                 ...|+|+||+.++++.++++|++++++ ||+++ ++.|||+++ +.+++++|+
T Consensus       115 ~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~  193 (373)
T 1p0f_A          115 NDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGS  193 (373)
T ss_dssp             CSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTC
T ss_pred             CCcccccccccCCccccccCCcccccccCCccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCC
Confidence            6431   110                 135999999999999999999999999 88886 789999998 458999999


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|||+|+|++|++++|+|+.+|+++|++++++++++++++++|+++++++....+++.+.+++++   ++++|+|||++|
T Consensus       194 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t---~gg~Dvvid~~g  270 (373)
T 1p0f_A          194 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKT---NGGVDYAVECAG  270 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHT---TSCBSEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHh---CCCCCEEEECCC
Confidence            99999999999999999999999779999999999999999999999887532345666666654   348999999999


Q ss_pred             ChHHHHHHHHhhcCC-CEEEEecccCC--cccccchHHHhcCcEEEEeecc---CCCHHHHHHHHHcCCCCCCCceeeee
Q 020928          219 FDKTMSTALNATRPG-GKVCLIGLAKT--EMTVALTPAAAREVDVIGIFRY---RSTWPLCIEFLRSGKIDVKPLITHRF  292 (319)
Q Consensus       219 ~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~  292 (319)
                      ++..++.++++++++ |+++.+|....  ...++...+..++ ++.++...   .++++++++++++|++++.+.++++|
T Consensus       271 ~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~  349 (373)
T 1p0f_A          271 RIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGR-SLKGSVFGGFKGEEVSRLVDDYMKKKINVNFLVSTKL  349 (373)
T ss_dssp             CHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTC-EEEECSGGGCCGGGHHHHHHHHHTTSSCGGGGEEEEE
T ss_pred             CHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCc-eEEeeccCCcCHHHHHHHHHHHHcCCCCchheEEEEe
Confidence            877899999999999 99999996543  2344445566677 88887643   35799999999999998778888999


Q ss_pred             cCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          293 GFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       293 ~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++  +++++|++.+++++. +|+++++
T Consensus       350 ~l--~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 1p0f_A          350 TL--DQINKAFELLSSGQG-VRSIMIY  373 (373)
T ss_dssp             CG--GGHHHHHHHTTTSSC-SEEEEEC
T ss_pred             eH--HHHHHHHHHHHCCCc-ceEEEeC
Confidence            99  999999999988764 7999875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2.6e-52  Score=369.95  Aligned_cols=304  Identities=24%  Similarity=0.355  Sum_probs=268.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEE-EccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVA-LEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~-~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||+++|||++|+++++|...  ...++|.++|||++|+|+++|++|++|++||||+ ..+..+|+.|.+|.+|++++|+
T Consensus        32 Vkv~a~gi~~~D~~~~~g~~~--~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~  109 (340)
T 3s2e_A           32 VKIEASGVCHTDLHAADGDWP--VKPTLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCE  109 (340)
T ss_dssp             EEEEEEEECHHHHHHHHTCSS--SCCCSSBCCCSEEEEEEEEECSSCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCT
T ss_pred             EEEEEeccCHHHHHHHcCCCC--CCCCCCcccCCcceEEEEEECCCCCcCCCCCEEEecCCCCCCCCChHHhCcCcccCc
Confidence            689999999999999988542  1246899999999999999999999999999994 5667799999999999999999


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      .....+. ..+|+|+||+.++++.++++|+++++++||.++ .+.|||++++..++++|++|||+|+|++|++++|+|+.
T Consensus       110 ~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~  188 (340)
T 3s2e_A          110 KQQNTGY-SVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARA  188 (340)
T ss_dssp             TCEEBTT-TBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH
T ss_pred             cccccCC-CCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence            8877654 468999999999999999999999999999775 67899999988999999999999999999999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      +|+ +|+++++++++.++++++|++.++++..  +++.+.+.+   +.+ ++|++||++|+.+.++.++++|+++|+++.
T Consensus       189 ~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~--~~~~~~~~~---~~g-~~d~vid~~g~~~~~~~~~~~l~~~G~iv~  261 (340)
T 3s2e_A          189 MGL-RVAAVDIDDAKLNLARRLGAEVAVNARD--TDPAAWLQK---EIG-GAHGVLVTAVSPKAFSQAIGMVRRGGTIAL  261 (340)
T ss_dssp             TTC-EEEEEESCHHHHHHHHHTTCSEEEETTT--SCHHHHHHH---HHS-SEEEEEESSCCHHHHHHHHHHEEEEEEEEE
T ss_pred             CCC-eEEEEeCCHHHHHHHHHcCCCEEEeCCC--cCHHHHHHH---hCC-CCCEEEEeCCCHHHHHHHHHHhccCCEEEE
Confidence            999 8999999999999999999999988643  466555554   234 899999999988899999999999999999


Q ss_pred             ecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          239 IGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       239 ~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      +|.......++...+..+++++.++... .++++++++++++|++++  . .+++++  +++++|++.+++++..||+|+
T Consensus       262 ~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~--~-~~~~~l--~~~~~A~~~~~~~~~~Gkvvv  336 (340)
T 3s2e_A          262 NGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLDFAAHGDVKA--T-VSTAKL--DDVNDVFGRLREGKVEGRVVL  336 (340)
T ss_dssp             CSCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSCCC--C-EEEECG--GGHHHHHHHHHTTCCCSEEEE
T ss_pred             eCCCCCCCCCCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHhCCCCc--e-EEEEeH--HHHHHHHHHHHcCCCceEEEE
Confidence            9977666666777788899999998876 567999999999999954  3 466788  999999999999999999999


Q ss_pred             eC
Q 020928          318 NL  319 (319)
Q Consensus       318 ~~  319 (319)
                      ++
T Consensus       337 ~~  338 (340)
T 3s2e_A          337 DF  338 (340)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=1.4e-51  Score=369.74  Aligned_cols=308  Identities=23%  Similarity=0.405  Sum_probs=263.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|..    +..+|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|++|++++|++
T Consensus        38 Vkv~a~gi~~~D~~~~~g~~----~~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~  113 (374)
T 2jhf_A           38 IKMVATGICRSDDHVVSGTL----VTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLK  113 (374)
T ss_dssp             EEEEEEECCHHHHHHHHTSS----CCCSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTT
T ss_pred             EEEeEEeechhhHHHHcCCC----CCCCCcccCcCceEEEEEECCCCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCC
Confidence            68999999999999988743    22379999999999999999999999999999999989999999999999999987


Q ss_pred             cccc---cCC-----------------CCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH-hcCCCCCC
Q 020928           81 MRFF---GSP-----------------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR-RANVGPET  138 (319)
Q Consensus        81 ~~~~---~~~-----------------~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~-~~~~~~~~  138 (319)
                      ....   +..                 ...|+|+||+.++++.++++|+++++++||+++ ++.|||+++. .+++++++
T Consensus       114 ~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  193 (374)
T 2jhf_A          114 NDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGS  193 (374)
T ss_dssp             CSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTC
T ss_pred             CccccccccccCCcccccccccccccccCCccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCC
Confidence            6431   110                 135999999999999999999999999999886 7899999984 58999999


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|||+|+|++|++++|+|+.+|+++|+++++++++.++++++|+++++++....+++.+.+.++.   ++++|+|||++|
T Consensus       194 ~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~---~~g~D~vid~~g  270 (374)
T 2jhf_A          194 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMS---NGGVDFSFEVIG  270 (374)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHT---TSCBSEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHh---CCCCcEEEECCC
Confidence            99999999999999999999999779999999999999999999999886532345666666554   348999999999


Q ss_pred             ChHHHHHHHHhhcCC-CEEEEecccCC--cccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeee
Q 020928          219 FDKTMSTALNATRPG-GKVCLIGLAKT--EMTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHR  291 (319)
Q Consensus       219 ~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~  291 (319)
                      ++..++.++++++++ |+++.+|....  ...++...+..++ ++.++...    .++++++++++++|++++.+.++++
T Consensus       271 ~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~  349 (374)
T 2jhf_A          271 RLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHV  349 (374)
T ss_dssp             CHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEE
T ss_pred             CHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEeccCCCChHHHHHHHHHHHHcCCCCchhheEEE
Confidence            877889999999999 99999996543  2344555566777 88887643    3468899999999999877888899


Q ss_pred             ecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          292 FGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       292 ~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      |++  +++++|++.+++++. +|+++++
T Consensus       350 ~~l--~~~~~A~~~~~~~~~-~Kvvi~~  374 (374)
T 2jhf_A          350 LPF--EKINEGFDLLRSGES-IRTILTF  374 (374)
T ss_dssp             EEG--GGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             EeH--HHHHHHHHHHHCCCc-ceEEEeC
Confidence            999  999999999988764 7999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-51  Score=369.36  Aligned_cols=308  Identities=23%  Similarity=0.394  Sum_probs=263.3

Q ss_pred             CCcceEeeccCCcc-ccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVV-YDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~-~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|++ +++|..    +..+|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|++|++++|+
T Consensus        38 Vkv~a~gi~~~D~~~~~~g~~----~~~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~  113 (374)
T 1cdo_A           38 IKIIATGVCHTDLYHLFEGKH----KDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCV  113 (374)
T ss_dssp             EEEEEEECCHHHHHHHHTTCC----TTSCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCS
T ss_pred             EEEeEEeechhhHHHHhCCCC----CCCCCcccCccceEEEEEECCCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCC
Confidence            68999999999999 887743    2467999999999999999999999999999999988899999999999999998


Q ss_pred             Ccccc---cCC-----------------CCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCC
Q 020928           80 EMRFF---GSP-----------------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPE  137 (319)
Q Consensus        80 ~~~~~---~~~-----------------~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~  137 (319)
                      +....   +..                 ...|+|+||+.++++.++++|+++++++||+++ ++.|||+++ +.+++++|
T Consensus       114 ~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g  193 (374)
T 1cdo_A          114 KGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPG  193 (374)
T ss_dssp             CSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTT
T ss_pred             CcccccccccccCCccccccCCcccccccCCccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCC
Confidence            76431   110                 025999999999999999999999999999886 789999988 45899999


Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      ++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++.++++....+++.+.+++++   ++++|++||++
T Consensus       194 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~---~~g~D~vid~~  270 (374)
T 1cdo_A          194 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMT---NGGVDFSLECV  270 (374)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHH---TSCBSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHh---CCCCCEEEECC
Confidence            999999999999999999999999779999999999999999999999886532345666666654   24899999999


Q ss_pred             CChHHHHHHHHhhcCC-CEEEEecccCC-cccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeee
Q 020928          218 GFDKTMSTALNATRPG-GKVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHR  291 (319)
Q Consensus       218 g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~  291 (319)
                      |++..++.++++++++ |+++.+|.... ...++...+..++ ++.++...    .+.++++++++++|++++.+.++++
T Consensus       271 g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~  349 (374)
T 1cdo_A          271 GNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHR  349 (374)
T ss_dssp             CCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEE
T ss_pred             CCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeeE
Confidence            9877889999999999 99999997543 3344445566677 88887643    3468899999999999877888899


Q ss_pred             ecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          292 FGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       292 ~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      |++  +++++|++.+++++. +|+++++
T Consensus       350 ~~l--~~~~~A~~~~~~~~~-~kvvi~~  374 (374)
T 1cdo_A          350 MPL--ESVNDAIDLMKHGKC-IRTVLSL  374 (374)
T ss_dssp             EEG--GGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             ecH--HHHHHHHHHHHCCCe-eEEEEeC
Confidence            999  999999999988864 7999875

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-52  Score=373.56  Aligned_cols=304  Identities=24%  Similarity=0.364  Sum_probs=261.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|.........+|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|.+|.+++|++
T Consensus        46 Vkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~  125 (359)
T 1h2b_A           46 VRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCEN  125 (359)
T ss_dssp             EEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTT
T ss_pred             EEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCC
Confidence            68999999999999998743110123679999999999999999999999999999998888999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhh---ccc-hhHHHHHHHHh--cCCCCCCeEEEECCCHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA---MCE-PLSVGVHACRR--ANVGPETNVMIMGSGPIGLVTLL  154 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa---~~~-~~~~a~~~l~~--~~~~~~~~vlI~G~g~vG~~ai~  154 (319)
                      ...++. ...|+|+||+.++++.++++|+++++++||   .+. ...|||+++++  +++++|++|||+|+|++|++++|
T Consensus       126 ~~~~G~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avq  204 (359)
T 1h2b_A          126 LEFPGL-NIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQ  204 (359)
T ss_dssp             CBCBTT-TBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHH
T ss_pred             cccccc-CCCCcccceEEechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHH
Confidence            766553 467999999999999999999999999998   443 56789999987  89999999999999999999999


Q ss_pred             HHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChH--HHHHHHHhhc
Q 020928          155 AARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDK--TMSTALNATR  231 (319)
Q Consensus       155 la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~--~~~~~~~~l~  231 (319)
                      +|+.+ |+ +|++++++++++++++++|+++++++..  + +.+.+++++.  +.++|++||++|++.  .+..++++  
T Consensus       205 lak~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~-~~~~v~~~~~--g~g~Dvvid~~G~~~~~~~~~~~~~--  276 (359)
T 1h2b_A          205 LLKVMTPA-TVIALDVKEEKLKLAERLGADHVVDARR--D-PVKQVMELTR--GRGVNVAMDFVGSQATVDYTPYLLG--  276 (359)
T ss_dssp             HHHHHCCC-EEEEEESSHHHHHHHHHTTCSEEEETTS--C-HHHHHHHHTT--TCCEEEEEESSCCHHHHHHGGGGEE--
T ss_pred             HHHHcCCC-eEEEEeCCHHHHHHHHHhCCCEEEeccc--h-HHHHHHHHhC--CCCCcEEEECCCCchHHHHHHHhhc--
Confidence            99999 99 7999999999999999999999988643  2 5566665542  458999999999876  67777777  


Q ss_pred             CCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC
Q 020928          232 PGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG  310 (319)
Q Consensus       232 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  310 (319)
                      ++|+++.+|..... .++...++.+++++.++... .++++++++++++|++  ++.+ ++|++  +++++|++.+++++
T Consensus       277 ~~G~~v~~g~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l--~~~i-~~~~l--~~~~~A~~~~~~~~  350 (359)
T 1h2b_A          277 RMGRLIIVGYGGEL-RFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGKV--RVEV-DIHKL--DEINDVLERLEKGE  350 (359)
T ss_dssp             EEEEEEECCCSSCC-CCCHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSC--CCCE-EEEEG--GGHHHHHHHHHTTC
T ss_pred             CCCEEEEEeCCCCC-CCCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCC--cceE-EEEeH--HHHHHHHHHHHcCC
Confidence            99999999975544 55556678899999998765 4568999999999998  4556 88999  99999999999998


Q ss_pred             CceEEEEeC
Q 020928          311 NAIKVMFNL  319 (319)
Q Consensus       311 ~~gkvvi~~  319 (319)
                      ..||+|+++
T Consensus       351 ~~gKvvv~~  359 (359)
T 1h2b_A          351 VLGRAVLIP  359 (359)
T ss_dssp             CSSEEEEEC
T ss_pred             CceEEEeeC
Confidence            889999974

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.5e-52  Score=373.13  Aligned_cols=309  Identities=24%  Similarity=0.301  Sum_probs=264.6

Q ss_pred             CCcceEeeccCCcc-ccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVV-YDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~-~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||+++|||++|++ +.+|..    +.++|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|..|+++.|.
T Consensus        29 Vkv~a~gi~~~D~~~~~~g~~----~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~  104 (352)
T 3fpc_A           29 VRPLAVAPCTSDIHTVFEGAI----GERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSG  104 (352)
T ss_dssp             EEEEEEECCHHHHHHHHSCTT----CCCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECSBCCCSSSHHHHTTCGGGTT
T ss_pred             EEeCEEeEcccchHHHhCCCC----CCCCCcccCCcceEEEEEECCCCCcCCCCCEEEEccccCCCCchhhcCCCcCCcc
Confidence            68999999999999 446543    3467999999999999999999999999999999999999999999999999887


Q ss_pred             Cccc--ccCCCCCCcceeEEeecCC--ceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHH
Q 020928           80 EMRF--FGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLL  154 (319)
Q Consensus        80 ~~~~--~~~~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~  154 (319)
                      ....  ......+|+|+||+.+++.  .++++|+++++++||++ .++.|||++++++++++|++|||+|+|++|++++|
T Consensus       105 ~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~q  184 (352)
T 3fpc_A          105 GMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVA  184 (352)
T ss_dssp             STTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHH
T ss_pred             ccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHH
Confidence            5432  1123468999999999976  89999999999999988 48899999998899999999999999999999999


Q ss_pred             HHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCC
Q 020928          155 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGG  234 (319)
Q Consensus       155 la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  234 (319)
                      +|+.+|+++|++++++++++++++++|+++++++.  .+++.+.+.+++  .+.++|+|||++|++..++.++++|+++|
T Consensus       185 la~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~--~~~~~~~v~~~t--~g~g~D~v~d~~g~~~~~~~~~~~l~~~G  260 (352)
T 3fpc_A          185 GANHLGAGRIFAVGSRKHCCDIALEYGATDIINYK--NGDIVEQILKAT--DGKGVDKVVIAGGDVHTFAQAVKMIKPGS  260 (352)
T ss_dssp             HHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGG--GSCHHHHHHHHT--TTCCEEEEEECSSCTTHHHHHHHHEEEEE
T ss_pred             HHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCC--CcCHHHHHHHHc--CCCCCCEEEECCCChHHHHHHHHHHhcCC
Confidence            99999997799999999999999999999998864  346666766665  35689999999999778999999999999


Q ss_pred             EEEEecccCCcccccch----HHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCceeeeec-CChhhHHHHHHHHh
Q 020928          235 KVCLIGLAKTEMTVALT----PAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITHRFG-FTQKEIEDAFEISA  307 (319)
Q Consensus       235 ~~v~~g~~~~~~~~~~~----~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~a~~~~~  307 (319)
                      +++.+|.......++..    ...++++++.++...  .+.++++++++++|++++.++++++|+ +  +++++|++.++
T Consensus       261 ~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl--~~~~~A~~~~~  338 (352)
T 3fpc_A          261 DIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGF--DNIEKAFMLMK  338 (352)
T ss_dssp             EEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCCHHHHHHHHHHHHHTTSCCGGGGEEEEEEST--THHHHHHHHHH
T ss_pred             EEEEecccCCCCceecchhHhhhhccccEEEEeeccCchhHHHHHHHHHHcCCCChhHhheeeCCCH--HHHHHHHHHHH
Confidence            99999975443333222    234578888887654  456899999999999988888999998 9  99999999999


Q ss_pred             cCCC-ceEEEEeC
Q 020928          308 QGGN-AIKVMFNL  319 (319)
Q Consensus       308 ~~~~-~gkvvi~~  319 (319)
                      +++. .+|+|+++
T Consensus       339 ~~~~~~~Kvvi~~  351 (352)
T 3fpc_A          339 DKPKDLIKPVVIL  351 (352)
T ss_dssp             SCCTTCSEEEEEC
T ss_pred             hCCCCcEEEEEEe
Confidence            8644 48999975

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=2.4e-52  Score=370.91  Aligned_cols=306  Identities=25%  Similarity=0.397  Sum_probs=264.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|.. ...+.++|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|++|.+++|+.
T Consensus        30 Vkv~a~gi~~~D~~~~~g~~-~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~  108 (345)
T 3jv7_A           30 LKVTAAGLCHSDIFVMDMPA-AQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTR  108 (345)
T ss_dssp             EEEEEEECCHHHHHHHHSCT-TTCCSCSSEECCSEEEEEEEEECTTCCSCCTTCEEEECCSCCCSSSHHHHTTCGGGCSS
T ss_pred             EEEEEEeeCHHHHHHHcCCC-CccCCCCCcccCcccEEEEEEECCCCCCCCCCCEEEEecCCCCCCChHHHCcCcCcCcc
Confidence            68999999999999998754 22345789999999999999999999999999999999999999999999999999943


Q ss_pred             cccc----cCCCCCCcceeEEeec-CCceEeCCCCCChhhhhccc-hhHHHHHHHHhc--CCCCCCeEEEECCCHHHHHH
Q 020928           81 MRFF----GSPPTNGSLAHKVVHP-AKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRA--NVGPETNVMIMGSGPIGLVT  152 (319)
Q Consensus        81 ~~~~----~~~~~~g~~~e~~~~~-~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~--~~~~~~~vlI~G~g~vG~~a  152 (319)
                      ...+    .....+|+|+||+.++ ++.++++|+ +++++||.++ ++.|||+++++.  +++++++|||+|+|++|+++
T Consensus       109 ~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a  187 (345)
T 3jv7_A          109 AADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVG  187 (345)
T ss_dssp             HHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHH
T ss_pred             ccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHH
Confidence            2221    1234579999999999 999999999 9999999775 789999999875  89999999999999999999


Q ss_pred             HHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcC
Q 020928          153 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRP  232 (319)
Q Consensus       153 i~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  232 (319)
                      +|+|+.+|..+|++++++++++++++++|++.++++..   ++.+.+++++  .+.++|+|||++|++..++.++++|++
T Consensus       188 ~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~---~~~~~v~~~t--~g~g~d~v~d~~G~~~~~~~~~~~l~~  262 (345)
T 3jv7_A          188 IQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGA---GAADAIRELT--GGQGATAVFDFVGAQSTIDTAQQVVAV  262 (345)
T ss_dssp             HHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECST---THHHHHHHHH--GGGCEEEEEESSCCHHHHHHHHHHEEE
T ss_pred             HHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCC---cHHHHHHHHh--CCCCCeEEEECCCCHHHHHHHHHHHhc
Confidence            99999995558999999999999999999999988642   5666666665  356899999999998789999999999


Q ss_pred             CCEEEEecccCC-cccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC
Q 020928          233 GGKVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG  310 (319)
Q Consensus       233 ~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  310 (319)
                      +|+++.+|.... ...++. .++.+++++.++... .++++++++++++|++++   +.++|++  +++++|++.+.+++
T Consensus       263 ~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~---~~~~~~l--~~~~~A~~~~~~~~  336 (345)
T 3jv7_A          263 DGHISVVGIHAGAHAKVGF-FMIPFGASVVTPYWGTRSELMEVVALARAGRLDI---HTETFTL--DEGPAAYRRLREGS  336 (345)
T ss_dssp             EEEEEECSCCTTCCEEEST-TTSCTTCEEECCCSCCHHHHHHHHHHHHTTCCCC---CEEEECS--TTHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCCCCcCH-HHHhCCCEEEEEecCCHHHHHHHHHHHHcCCCce---EEEEEcH--HHHHHHHHHHHcCC
Confidence            999999997554 445554 677889999998776 457899999999999954   3488999  99999999999999


Q ss_pred             CceEEEEeC
Q 020928          311 NAIKVMFNL  319 (319)
Q Consensus       311 ~~gkvvi~~  319 (319)
                      ..||+|+++
T Consensus       337 ~~Gkvvv~p  345 (345)
T 3jv7_A          337 IRGRGVVVP  345 (345)
T ss_dssp             CSSEEEECC
T ss_pred             CceeEEeCC
Confidence            999999874

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.9e-52  Score=372.36  Aligned_cols=305  Identities=25%  Similarity=0.431  Sum_probs=262.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|..    +..+|.++|||++|+|+++|++|++|++||||++.+ .+|++|.+|++|++++|++
T Consensus        36 Vkv~a~gi~~~D~~~~~g~~----~~~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~  110 (371)
T 1f8f_A           36 VKVVATGMCHTDLIVRDQKY----PVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSE  110 (371)
T ss_dssp             EEEEEEECCHHHHHHHTTSS----CCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECC-CCCSSSHHHHTTCGGGCTT
T ss_pred             EEEEEeecCchhHHHHcCCC----CCCCCcccCcccceEEEEeCCCCCCCCCCCEEEecC-CCCCCChhhhCcCcccccc
Confidence            68999999999999998743    346799999999999999999999999999999998 9999999999999999987


Q ss_pred             cccccC----------------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCC
Q 020928           81 MRFFGS----------------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGP  136 (319)
Q Consensus        81 ~~~~~~----------------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~  136 (319)
                      ...++.                      ....|+|+||+.++++.++++|+++++++||+++ ++.|||+++ +.+++++
T Consensus       111 ~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~  190 (371)
T 1f8f_A          111 FFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTP  190 (371)
T ss_dssp             HHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCT
T ss_pred             ccccccccccccccccccccCCccccccccCCccccCeEEechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCC
Confidence            642110                      0135999999999999999999999999999886 889999999 5689999


Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++.++++..  +++.+.+++++   ++++|+|||+
T Consensus       191 g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~--~~~~~~~~~~~---~gg~D~vid~  265 (371)
T 1f8f_A          191 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKT--QDPVAAIKEIT---DGGVNFALES  265 (371)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHT---TSCEEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCc--cCHHHHHHHhc---CCCCcEEEEC
Confidence            999999999999999999999999977999999999999999999999988643  45666665554   2389999999


Q ss_pred             cCChHHHHHHHHhhcCCCEEEEecccCC--cccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceee
Q 020928          217 VGFDKTMSTALNATRPGGKVCLIGLAKT--EMTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITH  290 (319)
Q Consensus       217 ~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~  290 (319)
                      +|++..++.++++|+++|+++.+|....  ...++...+..+++++.++...    .+.++++++++++|++++.+.+++
T Consensus       266 ~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~  345 (371)
T 1f8f_A          266 TGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF  345 (371)
T ss_dssp             SCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCHHHHHHHHHHHHHTTSCCGGGGEEE
T ss_pred             CCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCCCCchHHHHHHHHHHHHcCCCCcccceeE
Confidence            9987788999999999999999997542  2345556677899999998653    246889999999999987777877


Q ss_pred             eecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          291 RFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       291 ~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                       |++  +++++|++.+++++. +|+|+++
T Consensus       346 -~~l--~~~~~A~~~~~~~~~-~Kvvv~~  370 (371)
T 1f8f_A          346 -YAF--DEINQAAIDSRKGIT-LKPIIKI  370 (371)
T ss_dssp             -EEG--GGHHHHHHHHHHTSC-SEEEEEC
T ss_pred             -ecH--HHHHHHHHHHHCCCc-eEEEEee
Confidence             999  999999999988865 7999874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=2.6e-51  Score=368.02  Aligned_cols=309  Identities=26%  Similarity=0.403  Sum_probs=263.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|...   ...+|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|++|++++|++
T Consensus        36 Vkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~  112 (373)
T 2fzw_A           36 IKIIATAVCHTDAYTLSGADP---EGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQK  112 (373)
T ss_dssp             EEEEEEECCHHHHHHHHTCCT---TCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCT
T ss_pred             EEEEEEEEchhhHHHhcCCCC---CCCCCccccccccEEEEEECCCCCCCCCCCEEEECCCCCCCCChHHcCcCcccCCC
Confidence            689999999999999987431   13579999999999999999999999999999999989999999999999999987


Q ss_pred             cccc---cC-----------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCC
Q 020928           81 MRFF---GS-----------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPET  138 (319)
Q Consensus        81 ~~~~---~~-----------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~  138 (319)
                      ....   +.                 ....|+|+||+.++++.++++|+++++++||+++ ++.|||+++ +.+++++|+
T Consensus       113 ~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  192 (373)
T 2fzw_A          113 IRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGS  192 (373)
T ss_dssp             THHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTC
T ss_pred             cccccccccccCCcccccccccccccccCCccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCC
Confidence            5321   11                 0135999999999999999999999999999886 788999998 458999999


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++.++++....+++.+.+++++   ++++|++||++|
T Consensus       193 ~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~---~~g~D~vid~~g  269 (373)
T 2fzw_A          193 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMT---DGGVDYSFECIG  269 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHT---TSCBSEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHh---CCCCCEEEECCC
Confidence            99999999999999999999999779999999999999999999999886532345666666654   348999999999


Q ss_pred             ChHHHHHHHHhhcCC-CEEEEecccCC--cccccchHHHhcCcEEEEeecc----CCCHHHHHHHHHcCCCCCCCceeee
Q 020928          219 FDKTMSTALNATRPG-GKVCLIGLAKT--EMTVALTPAAAREVDVIGIFRY----RSTWPLCIEFLRSGKIDVKPLITHR  291 (319)
Q Consensus       219 ~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~  291 (319)
                      ++..++.++++++++ |+++.+|....  ...++...+..++ ++.++...    .+.++++++++++|++++.+.++++
T Consensus       270 ~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~  348 (373)
T 2fzw_A          270 NVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHN  348 (373)
T ss_dssp             CHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCSGGGEEEE
T ss_pred             cHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEeccCCCCcHHHHHHHHHHHHcCCCCchheEeEE
Confidence            877889999999999 99999996543  2344455566677 88887643    3468899999999999877888899


Q ss_pred             ecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          292 FGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       292 ~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      |++  +++++|++.+++++. +|+++++
T Consensus       349 ~~l--~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 2fzw_A          349 LSF--DEINKAFELMHSGKS-IRTVVKI  373 (373)
T ss_dssp             EEG--GGHHHHHHHHHHTCC-SEEEEEC
T ss_pred             eeH--HHHHHHHHHHhCCCc-ceEEEeC
Confidence            999  999999999988765 7999875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.1e-52  Score=372.51  Aligned_cols=308  Identities=25%  Similarity=0.399  Sum_probs=266.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCC------CCCCCCEEEEccCccCCCCcccc-CC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVK------SLEVGDRVALEPGISCGHCSLCK-AG   73 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~------~~~~Gd~V~~~~~~~~~~~~~~~-~~   73 (319)
                      |||.++|||++|+++++|...   ...+|.++|||++|+|+++| +|+      +|++||||++.+..+|++|.+|. +|
T Consensus        47 Vkv~a~gi~~~D~~~~~G~~~---~~~~P~v~GhE~~G~V~~vG-~V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g  122 (380)
T 1vj0_A           47 VEILSAGVCGSDVHMFRGEDP---RVPLPIILGHEGAGRVVEVN-GEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSK  122 (380)
T ss_dssp             EEEEEEEECHHHHHHHTTCCT---TCCSSBCCCCEEEEEEEEES-SCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSC
T ss_pred             EEEeEEeecccchHHhcCCCC---CCCCCcccCcCcEEEEEEeC-CccccccCCCCCCCCEEEEcccCCCCCCHHHhcCC
Confidence            689999999999999987431   13679999999999999999 999      99999999999989999999999 99


Q ss_pred             CCCCCCCcccccCC-------CCCCcceeEEee-cCCceEeCCCCCChh-hhhccchhHHHHHHHHhcC-CCCCCeEEEE
Q 020928           74 SYNLCPEMRFFGSP-------PTNGSLAHKVVH-PAKLCYKLPDNVSLE-EGAMCEPLSVGVHACRRAN-VGPETNVMIM  143 (319)
Q Consensus        74 ~~~~~~~~~~~~~~-------~~~g~~~e~~~~-~~~~~~~iP~~~~~~-~aa~~~~~~~a~~~l~~~~-~~~~~~vlI~  143 (319)
                      .+++|+...+++..       ...|+|+||+.+ +++.++++|++++++ +|++++++.|||+++++++ +++|++|||+
T Consensus       123 ~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~l~~~~~Aa~~~~~~ta~~al~~~~~~~~g~~VlV~  202 (380)
T 1vj0_A          123 EPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQ  202 (380)
T ss_dssp             CGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTSCHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEE
T ss_pred             CcccCCCcceeccccccCCCCCCCccccceEEEcccceEEECCCCCChHHhHhhhcHHHHHHHHHHhcCCCCCCCEEEEE
Confidence            99999987665531       357999999999 999999999999999 8888889999999998889 9999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC-CCcchhHHHHHhhhhcCCCccEEEEccCChHH
Q 020928          144 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST-DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKT  222 (319)
Q Consensus       144 G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~  222 (319)
                      |+|++|++++|+|+.+|+.+|++++++++++++++++|++.++++.. ..+++.+.+++++  .+.++|+|||++|++..
T Consensus       203 GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~--~g~g~Dvvid~~g~~~~  280 (380)
T 1vj0_A          203 GAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT--HGRGADFILEATGDSRA  280 (380)
T ss_dssp             CCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT--TTSCEEEEEECSSCTTH
T ss_pred             CcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHh--CCCCCcEEEECCCCHHH
Confidence            99999999999999999548999999999999999999999887641 1345555555554  24589999999998668


Q ss_pred             HHHHHHhhcCCCEEEEecccC-C-cccccchH-HHhcCcEEEEeecc-CCCHHHHHHHHHc--CCCCCCCceeeeecCCh
Q 020928          223 MSTALNATRPGGKVCLIGLAK-T-EMTVALTP-AAAREVDVIGIFRY-RSTWPLCIEFLRS--GKIDVKPLITHRFGFTQ  296 (319)
Q Consensus       223 ~~~~~~~l~~~G~~v~~g~~~-~-~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~  296 (319)
                      +..++++|+++|+++.+|... . ...++... ++.+++++.++... .+.++++++++++  |++  .+.++++|++  
T Consensus       281 ~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~~~g~l--~~~i~~~~~l--  356 (380)
T 1vj0_A          281 LLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLL--SKLITHRLPL--  356 (380)
T ss_dssp             HHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCCHHHHHHHHHHHHTCHHHH--GGGCCEEEEG--
T ss_pred             HHHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEEEEeecCCHHHHHHHHHHHHhhcCCe--eeEEEEEEeH--
Confidence            999999999999999999755 3 44555556 77899999998765 4568999999999  988  6777888999  


Q ss_pred             hhHHHHHHHHhcCCCceEEEEeC
Q 020928          297 KEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       297 ~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +++++|++.+++++.. |+|+++
T Consensus       357 ~~~~~A~~~~~~~~~~-Kvvl~~  378 (380)
T 1vj0_A          357 KEANKALELMESREAL-KVILYP  378 (380)
T ss_dssp             GGHHHHHHHHHHTSCS-CEEEEC
T ss_pred             HHHHHHHHHHhcCCCc-eEEEEe
Confidence            9999999999988777 999874

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=4.5e-51  Score=363.37  Aligned_cols=305  Identities=25%  Similarity=0.421  Sum_probs=270.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCc-cCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|+++++|..    +.++|.++|||++|+|+++|++|++|++||||+..+.. .|+.|.+|..+.++.|.
T Consensus        31 Vkv~a~gic~~D~~~~~G~~----~~~~p~i~GhE~aG~V~~vG~~V~~~~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~  106 (348)
T 4eez_A           31 LDMEYCGVCHTDLHVAAGDF----GNKAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCR  106 (348)
T ss_dssp             EEEEEEECCHHHHHHHTTTT----CCCTTCBCCSEEEEEEEEECTTCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCT
T ss_pred             EEEEEEEECHHHHHHhcCCC----CCCCCcccceeEEEEEEEECceeeecccCCeEeecccccccCccccccCCcccccc
Confidence            68999999999999998753    45789999999999999999999999999999876655 57889999999999998


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      .....+. ..+|+|+||+.+++..++++|+++++++|++++ +..|||++++.+++++|++|||+|+|++|.+++|+|+.
T Consensus       107 ~~~~~~~-~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~  185 (348)
T 4eez_A          107 EVKNAGY-SVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKN  185 (348)
T ss_dssp             TCEEBTT-TBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             ccccccc-ccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHH
Confidence            8776544 468999999999999999999999999999885 67889999998999999999999999999999999998


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      ++..+|++++++++|+++++++|++.++++.  ++++.+.+.+++  .+.++|.+++++++...+..++++++++|+++.
T Consensus       186 ~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~--~~~~~~~v~~~t--~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~  261 (348)
T 4eez_A          186 VFGAKVIAVDINQDKLNLAKKIGADVTINSG--DVNPVDEIKKIT--GGLGVQSAIVCAVARIAFEQAVASLKPMGKMVA  261 (348)
T ss_dssp             TSCCEEEEEESCHHHHHHHHHTTCSEEEEC---CCCHHHHHHHHT--TSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEE
T ss_pred             hCCCEEEEEECcHHHhhhhhhcCCeEEEeCC--CCCHHHHhhhhc--CCCCceEEEEeccCcchhheeheeecCCceEEE
Confidence            7656899999999999999999999999864  356777776665  467899999999999889999999999999999


Q ss_pred             ecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          239 IGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       239 ~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      +|.......++...+.++++++.|+... ..+++++++++++|+++  +.+ ++|++  +++++|++.+++++..||+||
T Consensus       262 ~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~~~~~~~~l~~~g~i~--p~~-~~~~l--~~~~~A~~~l~~g~~~GKvVl  336 (348)
T 4eez_A          262 VAVPNTEMTLSVPTVVFDGVEVAGSLVGTRLDLAEAFQFGAEGKVK--PIV-ATRKL--EEINDIIDEMKAGKIEGRMVI  336 (348)
T ss_dssp             CCCCSCEEEECHHHHHHSCCEEEECCSCCHHHHHHHHHHHHTTSCC--CCE-EEECG--GGHHHHHHHHHTTCCSSEEEE
T ss_pred             EeccCCCCccCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHcCCCE--EEE-EEEeH--HHHHHHHHHHHCCCCccEEEE
Confidence            9987777777888899999999998776 45789999999999994  544 78888  999999999999999999999


Q ss_pred             eC
Q 020928          318 NL  319 (319)
Q Consensus       318 ~~  319 (319)
                      ++
T Consensus       337 ~~  338 (348)
T 4eez_A          337 DF  338 (348)
T ss_dssp             EC
T ss_pred             Ec
Confidence            75

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=8.7e-51  Score=359.84  Aligned_cols=304  Identities=27%  Similarity=0.423  Sum_probs=263.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCc-cCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|++.++|...  ....+|.++|||++|+|+++|++|++|++||||++.+.. +|++|.+|.+|++++|+
T Consensus        30 Vkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~  107 (339)
T 1rjw_A           30 VRIKACGVCHTDLHAAHGDWP--VKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE  107 (339)
T ss_dssp             EEEEEEEECHHHHHHHHTCSS--SCCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCT
T ss_pred             EEEEEEeEchhhHHHhcCCCC--cCCCCCeeccccceEEEEEECCCCCcCCCCCEEEEecCCCCCCCCchhhCcCcccCC
Confidence            689999999999999887431  224679999999999999999999999999999986644 59999999999999999


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARA  158 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~  158 (319)
                      +..+.+. ..+|+|+||+.++++.++++|+++++++||.++ .+.|||+++++.+++++++|||+|+|++|++++|+|+.
T Consensus       108 ~~~~~g~-~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~  186 (339)
T 1rjw_A          108 HQKNAGY-SVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKA  186 (339)
T ss_dssp             TCEEBTT-TBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHH
T ss_pred             Ccceeec-CCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence            8776653 467999999999999999999999999999875 67889999988899999999999988899999999999


Q ss_pred             cCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          159 FGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       159 ~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      .|+ +|+++++++++.++++++|++.++++..  +++.+.+.++.    .++|++||++|++..++.++++++++|+++.
T Consensus       187 ~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~~--~~~~~~~~~~~----~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~  259 (339)
T 1rjw_A          187 MGL-NVVAVDIGDEKLELAKELGADLVVNPLK--EDAAKFMKEKV----GGVHAAVVTAVSKPAFQSAYNSIRRGGACVL  259 (339)
T ss_dssp             TTC-EEEEECSCHHHHHHHHHTTCSEEECTTT--SCHHHHHHHHH----SSEEEEEESSCCHHHHHHHHHHEEEEEEEEE
T ss_pred             cCC-EEEEEeCCHHHHHHHHHCCCCEEecCCC--ccHHHHHHHHh----CCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            999 8999999999999999999998887643  45555555543    4799999999987789999999999999999


Q ss_pred             ecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEE
Q 020928          239 IGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMF  317 (319)
Q Consensus       239 ~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  317 (319)
                      +|.......++...++.+++++.++... .++++++++++++|++++  . .++|++  +++++|++.+++++..||+|+
T Consensus       260 ~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~--~-~~~~~l--~~~~~A~~~~~~~~~~gKvvi  334 (339)
T 1rjw_A          260 VGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVKT--I-IEVQPL--EKINEVFDRMLKGQINGRVVL  334 (339)
T ss_dssp             CCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSCCC--C-EEEEEG--GGHHHHHHHHHTTCCSSEEEE
T ss_pred             ecccCCCCccCHHHHHhCCcEEEEeccCCHHHHHHHHHHHHcCCCCc--c-EEEEcH--HHHHHHHHHHHcCCCceEEEE
Confidence            9976554455556677899999998765 456899999999999954  3 478899  999999999999888899999


Q ss_pred             eC
Q 020928          318 NL  319 (319)
Q Consensus       318 ~~  319 (319)
                      ++
T Consensus       335 ~~  336 (339)
T 1rjw_A          335 TL  336 (339)
T ss_dssp             EC
T ss_pred             ec
Confidence            74

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=2.3e-51  Score=364.90  Aligned_cols=295  Identities=20%  Similarity=0.253  Sum_probs=254.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC-ccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~   79 (319)
                      |||+++|||++|+++++|...   ..++|.++|||++|+|+++|++|++|++||||++.+. .+|++|.+|++|++++|+
T Consensus        34 Vkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~  110 (348)
T 3two_A           34 IDILYAGICHSDIHSAYSEWK---EGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCT  110 (348)
T ss_dssp             EEEEEEEECHHHHHHHTTSSS---CCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCT
T ss_pred             EEEEEeeecccchhhhcCCCC---CCCCCeecCcceeEEEEEECCCCCCCCCCCEEEEeCCcCCCCCChhHhCCCcccCc
Confidence            689999999999999987542   2468999999999999999999999999999988654 589999999999999998


Q ss_pred             CcccccCC---------CCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHH
Q 020928           80 EMRFFGSP---------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIG  149 (319)
Q Consensus        80 ~~~~~~~~---------~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG  149 (319)
                       ....+..         ...|+|+||+.++++.++++|+++++++||.++ .+.|||+++++.++++|++|||+|+|++|
T Consensus       111 -~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG  189 (348)
T 3two_A          111 -KVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLG  189 (348)
T ss_dssp             -TCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHH
T ss_pred             -ccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHH
Confidence             3332221         124999999999999999999999999999876 67899999988999999999999999999


Q ss_pred             HHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHh
Q 020928          150 LVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA  229 (319)
Q Consensus       150 ~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~  229 (319)
                      ++++|+|+.+|+ +|+++++++++.++++++|++.++ .  .. +   .   +    ..++|+|||++|++..++.++++
T Consensus       190 ~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-~--~~-~---~---~----~~~~D~vid~~g~~~~~~~~~~~  254 (348)
T 3two_A          190 SMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-T--DP-K---Q---C----KEELDFIISTIPTHYDLKDYLKL  254 (348)
T ss_dssp             HHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-S--SG-G---G---C----CSCEEEEEECCCSCCCHHHHHTT
T ss_pred             HHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-C--CH-H---H---H----hcCCCEEEECCCcHHHHHHHHHH
Confidence            999999999999 799999999999999999999987 2  11 1   1   1    12899999999987688999999


Q ss_pred             hcCCCEEEEecccC-Cccc-ccchHHH-hcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHH
Q 020928          230 TRPGGKVCLIGLAK-TEMT-VALTPAA-AREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI  305 (319)
Q Consensus       230 l~~~G~~v~~g~~~-~~~~-~~~~~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~  305 (319)
                      |+++|+++.+|... .... ++...+. .+++++.++... .++++++++++++|++++  .+ ++|++  +++++|++.
T Consensus       255 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~--~~-~~~~l--~~~~~A~~~  329 (348)
T 3two_A          255 LTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFSIKHNIYP--EI-DLILG--KDIDTAYHN  329 (348)
T ss_dssp             EEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSCCHHHHHHHHHHHHHTTCCC--CE-EEECG--GGHHHHHHH
T ss_pred             HhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecCCHHHHHHHHHHHHhCCCCc--eE-EEEEH--HHHHHHHHH
Confidence            99999999999766 4444 5556666 899999998776 456899999999999954  33 78888  999999999


Q ss_pred             HhcCCCceEEEEeC
Q 020928          306 SAQGGNAIKVMFNL  319 (319)
Q Consensus       306 ~~~~~~~gkvvi~~  319 (319)
                      +.+++..||+|+++
T Consensus       330 ~~~~~~~gKvVi~~  343 (348)
T 3two_A          330 LTHGKAKFRYVIDM  343 (348)
T ss_dssp             HHTTCCCSEEEEEG
T ss_pred             HHcCCCceEEEEec
Confidence            99999899999974

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=2.5e-51  Score=370.81  Aligned_cols=307  Identities=23%  Similarity=0.400  Sum_probs=260.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|..    +.++|.++|||++|+|+++|++|++|++||||++.+..+|+.|.+|++|++++|++
T Consensus        37 Vkv~a~gic~~D~~~~~G~~----~~~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~  112 (398)
T 2dph_A           37 LKVVSTNICGSDQHIYRGRF----IVPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCEN  112 (398)
T ss_dssp             EEEEEEECCHHHHHHHTTSS----CCCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCC
T ss_pred             EEEEEEeecHHHHHHhcCCC----CCCCCcccCCceEEEEEEECCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCC
Confidence            68999999999999998742    34679999999999999999999999999999999889999999999999999986


Q ss_pred             --cc------cccC--CCCCCcceeEEeecCC--ceEeCCCCCChhh----hhcc-chhHHHHHHHHhcCCCCCCeEEEE
Q 020928           81 --MR------FFGS--PPTNGSLAHKVVHPAK--LCYKLPDNVSLEE----GAMC-EPLSVGVHACRRANVGPETNVMIM  143 (319)
Q Consensus        81 --~~------~~~~--~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~----aa~~-~~~~~a~~~l~~~~~~~~~~vlI~  143 (319)
                        ..      .++.  ....|+|+||++++++  .++++|+++++++    ||++ .++.|||++++++++++|++|||+
T Consensus       113 ~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~  192 (398)
T 2dph_A          113 NLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIA  192 (398)
T ss_dssp             TTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             ccccccccccccccccCCCCceeeeeEEeccccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHHHHcCCCCCCEEEEE
Confidence              21      2221  1357999999999987  8999999999998    6766 488999999988999999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcch-hHHHHHhhhhcCCCccEEEEccCChH-
Q 020928          144 GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDV-DTDVGKIQNAMGSGIDVSFDCVGFDK-  221 (319)
Q Consensus       144 G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~~i~~~~~~~~~~~d~v~d~~g~~~-  221 (319)
                      |+|++|++++|+|+.+|+.+|++++++++++++++++|++ ++++..  +++ .+.+++++  .+.++|+|||++|++. 
T Consensus       193 GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~--~~~~~~~~~~~~--~g~g~Dvvid~~g~~~~  267 (398)
T 2dph_A          193 GAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE-TIDLRN--SAPLRDQIDQIL--GKPEVDCGVDAVGFEAH  267 (398)
T ss_dssp             CCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE-EEETTS--SSCHHHHHHHHH--SSSCEEEEEECSCTTCB
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-EEcCCC--cchHHHHHHHHh--CCCCCCEEEECCCCccc
Confidence            9999999999999999997899999999999999999995 777643  344 55665554  3458999999999752 


Q ss_pred             -------------HHHHHHHhhcCCCEEEEecccC-------------CcccccchHHHhcCcEEEEeecc-CCCHHHHH
Q 020928          222 -------------TMSTALNATRPGGKVCLIGLAK-------------TEMTVALTPAAAREVDVIGIFRY-RSTWPLCI  274 (319)
Q Consensus       222 -------------~~~~~~~~l~~~G~~v~~g~~~-------------~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~  274 (319)
                                   .++.++++|+++|+++.+|...             ....++...++.+++++.++... .+.+++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~  347 (398)
T 2dph_A          268 GLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYNRHLT  347 (398)
T ss_dssp             CSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCCGGGTHHHHH
T ss_pred             cccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccccccCCcccccHHHHhhcCCEEEEeccCcHHHHHHHH
Confidence                         6889999999999999998651             22244555677899999887654 56789999


Q ss_pred             HHHHcCCCC--CCCceeeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          275 EFLRSGKID--VKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       275 ~~~~~g~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +++++|+++  +.+.++++|++  +++++|++.+.+++. +|+|+++
T Consensus       348 ~l~~~g~l~~~~~~~i~~~~~l--~~~~~A~~~~~~~~~-gKvvv~~  391 (398)
T 2dph_A          348 EAILWDQMPYLSKVMNIEVITL--DQAPDGYAKFDKGSP-AKFVIDP  391 (398)
T ss_dssp             HHHHTTCCHHHHHHHCEEEECS--TTHHHHHHHHHTTCS-CEEEECT
T ss_pred             HHHHcCCCCccchhhEEEEEcH--HHHHHHHHHHhcCCc-eEEEEec
Confidence            999999996  65677889999  999999999998877 9999864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.2e-50  Score=359.68  Aligned_cols=302  Identities=22%  Similarity=0.338  Sum_probs=244.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|.... ....+|.++|||++|+|+++|++ ++|++||||+..+..+|++|.+|.+|.+++|++
T Consensus        33 Vkv~a~gi~~~D~~~~~g~~~~-~~~~~p~i~G~E~~G~V~~vG~~-~~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~  110 (344)
T 2h6e_A           33 IRIGGAGVCRTDLRVWKGVEAK-QGFRLPIILGHENAGTIVEVGEL-AKVKKGDNVVVYATWGDLTCRYCREGKFNICKN  110 (344)
T ss_dssp             EEEEEEECCHHHHHHHTTSCCC-TTCCSSEECCCCEEEEEEEECTT-CCCCTTCEEEECSCBCCSCSTTGGGTCGGGCTT
T ss_pred             EEEEEEEechhhHHHHcCCCcc-cCCCCCccccccceEEEEEECCC-CCCCCCCEEEECCCCCCCCChhhhCCCcccCCC
Confidence            6899999999999999875321 12367999999999999999999 999999999988888999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeec-CCceEeCCCCCChhhhhccc-hhHHHHHHHHhc-----CCCCCCeEEEECCCHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHP-AKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRA-----NVGPETNVMIMGSGPIGLVTL  153 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~-~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~-----~~~~~~~vlI~G~g~vG~~ai  153 (319)
                      ...++. ...|+|+||+.++ ++.++++ +++++++||.++ .+.|||+++++.     ++ +|++|||+|+|++|++++
T Consensus       111 ~~~~G~-~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~ai  187 (344)
T 2h6e_A          111 QIIPGQ-TTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTI  187 (344)
T ss_dssp             CBCBTT-TBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHH
T ss_pred             cccccc-ccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHH
Confidence            766554 4579999999999 9999999 999999999775 678999999776     89 999999999999999999


Q ss_pred             HHHHHc--CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhc
Q 020928          154 LAARAF--GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       154 ~la~~~--g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  231 (319)
                      |+|+.+  |+ +|++++++++++++++++|+++++++... ++   .+.+++.  +.++|+|||++|++..++.++++++
T Consensus       188 qlak~~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~-~~---~~~~~~~--g~g~D~vid~~g~~~~~~~~~~~l~  260 (344)
T 2h6e_A          188 QILKALMKNI-TIVGISRSKKHRDFALELGADYVSEMKDA-ES---LINKLTD--GLGASIAIDLVGTEETTYNLGKLLA  260 (344)
T ss_dssp             HHHHHHCTTC-EEEEECSCHHHHHHHHHHTCSEEECHHHH-HH---HHHHHHT--TCCEEEEEESSCCHHHHHHHHHHEE
T ss_pred             HHHHHhcCCC-EEEEEeCCHHHHHHHHHhCCCEEeccccc-hH---HHHHhhc--CCCccEEEECCCChHHHHHHHHHhh
Confidence            999999  99 69999999999999999999998875320 12   2333432  4589999999999878999999999


Q ss_pred             CCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC
Q 020928          232 PGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG  310 (319)
Q Consensus       232 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  310 (319)
                      ++|+++.+|.......++...+..+++++.++... .++++++++++++|++  ++.+ ++|++  +++++|++.+++++
T Consensus       261 ~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i--~~~i-~~~~l--~~~~~A~~~~~~~~  335 (344)
T 2h6e_A          261 QEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSNYGSLNDLEDVVRLSESGKI--KPYI-IKVPL--DDINKAFTNLDEGR  335 (344)
T ss_dssp             EEEEEEECCCCSSCCCCCHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSS--CCCE-EEECC----------------
T ss_pred             cCCEEEEeCCCCCCcccCHHHHhhCCcEEEEEecCCHHHHHHHHHHHHcCCC--Ccce-EEEeH--HHHHHHHHHHHcCC
Confidence            99999999976544456666678899999998765 4568999999999998  4556 88999  99999999999888


Q ss_pred             CceEEEEeC
Q 020928          311 NAIKVMFNL  319 (319)
Q Consensus       311 ~~gkvvi~~  319 (319)
                      ..||+|+++
T Consensus       336 ~~gKvvl~~  344 (344)
T 2h6e_A          336 VDGRQVITP  344 (344)
T ss_dssp             --CEEEECC
T ss_pred             CceEEEEeC
Confidence            889999874

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=6e-51  Score=368.93  Aligned_cols=306  Identities=25%  Similarity=0.412  Sum_probs=264.1

Q ss_pred             CCcceEeeccCCccccccccccc----cccCCCcccccceeEEEEEeCCCC------CCCCCCCEEEEccCccCCCCccc
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCAN----FIVKKPMVIGHECAGIIEEVGSEV------KSLEVGDRVALEPGISCGHCSLC   70 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~----~~~~~p~i~G~e~~G~V~~~G~~v------~~~~~Gd~V~~~~~~~~~~~~~~   70 (319)
                      |||.++|||++|+++++|...+.    ...++|.++|||++|+|+++|++|      ++|++||||++.+..+|+.|.+|
T Consensus        60 Vkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C  139 (404)
T 3ip1_A           60 IKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPC  139 (404)
T ss_dssp             EEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECCTTCEEEECSEECCSCSHHH
T ss_pred             EEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECCCccccccCCCCCCCCEEEECCccCCCCCHHH
Confidence            68999999999999998753221    124789999999999999999999      89999999999999999999999


Q ss_pred             cCCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCCh------hhhhcc-chhHHHHHHHH-h-cCCCCCCeEE
Q 020928           71 KAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSL------EEGAMC-EPLSVGVHACR-R-ANVGPETNVM  141 (319)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~------~~aa~~-~~~~~a~~~l~-~-~~~~~~~~vl  141 (319)
                      .+|.+++|+....++. ...|+|+||+.++++.++++|+++++      .++|++ .+++|||+++. . +++++|++||
T Consensus       140 ~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~Vl  218 (404)
T 3ip1_A          140 AEGFPNHCENLNELGF-NVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVV  218 (404)
T ss_dssp             HTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEE
T ss_pred             HCcCcccCccccccCC-CCCCCCcceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEE
Confidence            9999999999877765 46899999999999999999998863      335544 68999999995 3 5899999999


Q ss_pred             EECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCCh-
Q 020928          142 IMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD-  220 (319)
Q Consensus       142 I~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~-  220 (319)
                      |+|+|++|++++|+|+.+|+++|++++++++++++++++|+++++++.  .+++.+.+.+++  .+.++|+||||+|++ 
T Consensus       219 V~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~--~~~~~~~i~~~t--~g~g~D~vid~~g~~~  294 (404)
T 3ip1_A          219 ILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPT--KENFVEAVLDYT--NGLGAKLFLEATGVPQ  294 (404)
T ss_dssp             EECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTT--TSCHHHHHHHHT--TTCCCSEEEECSSCHH
T ss_pred             EECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCC--CCCHHHHHHHHh--CCCCCCEEEECCCCcH
Confidence            999999999999999999998899999999999999999999998864  346777776665  356899999999987 


Q ss_pred             HHHHHHHHhh----cCCCEEEEecccCCcccccchHHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCceeeeecC
Q 020928          221 KTMSTALNAT----RPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITHRFGF  294 (319)
Q Consensus       221 ~~~~~~~~~l----~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~  294 (319)
                      ..+..+.++|    +++|+++.+|.......++...+..+++++.++...  .+.++++++++++| +++.+.++++|++
T Consensus       295 ~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ll~~g-l~~~~~i~~~~~l  373 (404)
T 3ip1_A          295 LVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQGHSGHGTFPRVISLMASG-MDMTKIISKTVSM  373 (404)
T ss_dssp             HHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHHTTCEEEECCCCCSTTHHHHHHHHHHTT-CCGGGGCCEEECG
T ss_pred             HHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhccceEEEEecCCCchHHHHHHHHHHHcC-CChhheEEEEeeH
Confidence            3566777777    999999999987666677788889999999998854  56799999999999 8888888899999


Q ss_pred             ChhhHHHHHHHHhcCCCceEEEEe
Q 020928          295 TQKEIEDAFEISAQGGNAIKVMFN  318 (319)
Q Consensus       295 ~~~~~~~a~~~~~~~~~~gkvvi~  318 (319)
                        +++++|++.+.    .||+|++
T Consensus       374 --~~~~~A~~~~~----~GKvvl~  391 (404)
T 3ip1_A          374 --EEIPEYIKRLQ----TDKSLVK  391 (404)
T ss_dssp             --GGHHHHHHHTT----TCTTCSC
T ss_pred             --HHHHHHHHHHh----CCcEEEe
Confidence              99999999988    3566654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.9e-51  Score=368.22  Aligned_cols=308  Identities=23%  Similarity=0.366  Sum_probs=256.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|..    +.++|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|++|++++|+.
T Consensus        38 Vkv~a~gi~~~D~~~~~g~~----~~~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~  113 (398)
T 1kol_A           38 LKVVSTNICGSDQHMVRGRT----TAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLT  113 (398)
T ss_dssp             EEEEEEECCHHHHHHHTTCS----CCCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSS
T ss_pred             EEEEEEeechhhHHHHcCCC----CCCCCcccCcccEEEEEEECCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCC
Confidence            68999999999999998742    34579999999999999999999999999999988888999999999999999987


Q ss_pred             cc------cccC---CCCCCcceeEEeecCC--ceEeCCCCCChhh----hhcc-chhHHHHHHHHhcCCCCCCeEEEEC
Q 020928           81 MR------FFGS---PPTNGSLAHKVVHPAK--LCYKLPDNVSLEE----GAMC-EPLSVGVHACRRANVGPETNVMIMG  144 (319)
Q Consensus        81 ~~------~~~~---~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~----aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G  144 (319)
                      ..      .++.   ....|+|+||+++++.  .++++|+++++++    |+.+ .++.|||++++++++++|++|||+|
T Consensus       114 ~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G  193 (398)
T 1kol_A          114 VNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAG  193 (398)
T ss_dssp             SCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             cccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCCcchhhhcccccccccHHHHHHHHHHHcCCCCCCEEEEEC
Confidence            63      1222   1346999999999987  8999999999887    5555 4789999999889999999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCCh----
Q 020928          145 SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD----  220 (319)
Q Consensus       145 ~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~----  220 (319)
                      +|++|++++|+|+.+|+++|++++++++++++++++|++ ++++.. ..++.+.+++++  .+.++|+|||++|++    
T Consensus       194 aG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~-~~~~~~~v~~~t--~g~g~Dvvid~~G~~~~~~  269 (398)
T 1kol_A          194 AGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-IADLSL-DTPLHEQIAALL--GEPEVDCAVDAVGFEARGH  269 (398)
T ss_dssp             CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-EEETTS-SSCHHHHHHHHH--SSSCEEEEEECCCTTCBCS
T ss_pred             CcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc-EEccCC-cchHHHHHHHHh--CCCCCCEEEECCCCccccc
Confidence            999999999999999997899999999999999999997 666643 223556666554  356899999999975    


Q ss_pred             -----------HHHHHHHHhhcCCCEEEEeccc-C-C-----------cccccchHHHhcCcEEEEeecc-CCCHHHHHH
Q 020928          221 -----------KTMSTALNATRPGGKVCLIGLA-K-T-----------EMTVALTPAAAREVDVIGIFRY-RSTWPLCIE  275 (319)
Q Consensus       221 -----------~~~~~~~~~l~~~G~~v~~g~~-~-~-----------~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~  275 (319)
                                 ..++.++++++++|+++.+|.. . .           ...++...++.+++++.+.... .+.++++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  349 (398)
T 1kol_A          270 GHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQ  349 (398)
T ss_dssp             STTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSCCHHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHhcCCEEEEeccccCCcccccccccccccccccHHHHhhcccEEEecccChHHHHHHHHH
Confidence                       2688999999999999999864 1 1           1233444567788998876433 345788999


Q ss_pred             HHHcCCCC-CCCceeeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          276 FLRSGKID-VKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       276 ~~~~g~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++.+|+++ ..+.++++|++  +++++|++.+.+++. +|+|+++
T Consensus       350 l~~~g~l~~~~~~i~~~~~l--~~~~~A~~~~~~~~~-gKvvi~~  391 (398)
T 1kol_A          350 AIMWDRINIAEVVGVQVISL--DDAPRGYGEFDAGVP-KKFVIDP  391 (398)
T ss_dssp             HHHTTSCCHHHHHTEEEECG--GGHHHHHHHHHHTCS-CEEEECT
T ss_pred             HHHcCCCCCccceeEEEEcH--HHHHHHHHHHhCCCc-eEEEEEe
Confidence            99999996 33566788999  999999999998877 9999974

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=3.5e-50  Score=356.60  Aligned_cols=306  Identities=26%  Similarity=0.442  Sum_probs=264.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|...  ...++|.++|||++|+|+++|++|++|++||||+..+..+|+.|.+|.+|.+++|++
T Consensus        32 Vkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~  109 (343)
T 2eih_A           32 VRLKAAALNHLDVWVRKGVAS--PKLPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPR  109 (343)
T ss_dssp             EEEEEEECCHHHHHHHHTSSS--TTCCSSEECCSEEEEEEEEECSSCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTT
T ss_pred             EEEEEEEeCHHHHHHhcCCCC--CCCCCCcccccceEEEEEEECCCCCCCCCCCEEEECCCCCcccchhhccCccccccc
Confidence            689999999999999987431  123679999999999999999999999999999999988999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHh-cCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRR-ANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                      ..++|. ...|+|+||+.++++.++++|+++++++||.+ .++.|||+++++ ++++++++|||+|+ |++|++++|+|+
T Consensus       110 ~~~~G~-~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~  188 (343)
T 2eih_A          110 YQILGE-HRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAK  188 (343)
T ss_dssp             CEETTT-SSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHH
T ss_pred             ccccCc-CCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHH
Confidence            876654 34799999999999999999999999999966 588999999976 79999999999996 999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++++++++.+.++++|++.++++..  +++.+.+.++.  .+.++|++||++|+ ..++.++++++++|+++
T Consensus       189 ~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~--~~~~~~~~~~~--~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v  262 (343)
T 2eih_A          189 LFGA-RVIATAGSEDKLRRAKALGADETVNYTH--PDWPKEVRRLT--GGKGADKVVDHTGA-LYFEGVIKATANGGRIA  262 (343)
T ss_dssp             HTTC-EEEEEESSHHHHHHHHHHTCSEEEETTS--TTHHHHHHHHT--TTTCEEEEEESSCS-SSHHHHHHHEEEEEEEE
T ss_pred             HCCC-EEEEEeCCHHHHHHHHhcCCCEEEcCCc--ccHHHHHHHHh--CCCCceEEEECCCH-HHHHHHHHhhccCCEEE
Confidence            9999 7999999999999999999998877643  35555555543  24589999999995 48899999999999999


Q ss_pred             EecccCCc-ccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEE
Q 020928          238 LIGLAKTE-MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKV  315 (319)
Q Consensus       238 ~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  315 (319)
                      .+|..... ..++...++.+++++.++... .+.++++++++++|++  ++.++++|++  +++++|++.+++++..||+
T Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l--~~~~~A~~~~~~~~~~gKv  338 (343)
T 2eih_A          263 IAGASSGYEGTLPFAHVFYRQLSILGSTMASKSRLFPILRFVEEGKL--KPVVGQVLPL--EAAAEGHRLLEERRVFGKV  338 (343)
T ss_dssp             ESSCCCSCCCCCCTTHHHHTTCEEEECCSCCGGGHHHHHHHHHHTSS--CCCEEEEEEG--GGHHHHHHHHHTTCSSSEE
T ss_pred             EEecCCCCcCccCHHHHHhCCcEEEEecCccHHHHHHHHHHHHcCCC--CCceeEEeeH--HHHHHHHHHHHcCCCceEE
Confidence            99975433 235566678899999998754 5679999999999998  5677899999  9999999999988888999


Q ss_pred             EEeC
Q 020928          316 MFNL  319 (319)
Q Consensus       316 vi~~  319 (319)
                      |+++
T Consensus       339 vv~~  342 (343)
T 2eih_A          339 VLQV  342 (343)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9874

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=7.9e-50  Score=354.89  Aligned_cols=307  Identities=28%  Similarity=0.414  Sum_probs=264.1

Q ss_pred             CCcceEeeccCCcccccccccc-----ccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCA-----NFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY   75 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~-----~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~   75 (319)
                      |||.++|||++|+++++|....     .....+|.++|||++|+|+++|++|++|++||||++.+..+|++|.+|.+|++
T Consensus        30 Vkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~  109 (347)
T 1jvb_A           30 IKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEE  109 (347)
T ss_dssp             EEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCG
T ss_pred             EEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCc
Confidence            6899999999999998874321     01236799999999999999999999999999999888889999999999999


Q ss_pred             CCCCCcccccCCCCCCcceeEEeecC-CceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECC-CHHHHHH
Q 020928           76 NLCPEMRFFGSPPTNGSLAHKVVHPA-KLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGS-GPIGLVT  152 (319)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~e~~~~~~-~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~-g~vG~~a  152 (319)
                      ++|++...++. ..+|+|+||+.+++ +.++++ +++++++||.++ .+.|||+++++++++++++|||+|+ |++|+++
T Consensus       110 ~~C~~~~~~G~-~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~  187 (347)
T 1jvb_A          110 HLCDSPRWLGI-NFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMA  187 (347)
T ss_dssp             GGCSSCEEBTT-TBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHH
T ss_pred             ccCcccccccc-cCCCcceeEEEecCccceEEe-CCCCHHHcccchhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHH
Confidence            99998776653 45799999999999 999999 999999999775 6788999998899999999999996 5999999


Q ss_pred             HHHHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhc
Q 020928          153 LLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       153 i~la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  231 (319)
                      +|+|+.. |+ +|+++++++++.++++++|++.++++..  .++.+.+.++..  .+++|++||++|++..++.++++++
T Consensus       188 ~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~--~~~~d~vi~~~g~~~~~~~~~~~l~  262 (347)
T 1jvb_A          188 VQIAKAVSGA-TIIGVDVREEAVEAAKRAGADYVINASM--QDPLAEIRRITE--SKGVDAVIDLNNSEKTLSVYPKALA  262 (347)
T ss_dssp             HHHHHHHTCC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHTT--TSCEEEEEESCCCHHHHTTGGGGEE
T ss_pred             HHHHHHcCCC-eEEEEcCCHHHHHHHHHhCCCEEecCCC--ccHHHHHHHHhc--CCCceEEEECCCCHHHHHHHHHHHh
Confidence            9999999 99 7899999999999999999998887543  455555555432  1489999999998778889999999


Q ss_pred             CCCEEEEecccC-CcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcC
Q 020928          232 PGGKVCLIGLAK-TEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG  309 (319)
Q Consensus       232 ~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  309 (319)
                      ++|+++.+|... .. .++...+..+++++.++... .+.++++++++++|++  ++.++++|++  +++++|++.++++
T Consensus       263 ~~G~iv~~g~~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l--~~~~~A~~~~~~~  337 (347)
T 1jvb_A          263 KQGKYVMVGLFGADL-HYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKV--KPMITKTMKL--EEANEAIDNLENF  337 (347)
T ss_dssp             EEEEEEECCSSCCCC-CCCHHHHHHHTCEEEECCSCCHHHHHHHHHHHHTTSS--CCCCEEEEEG--GGHHHHHHHHHTT
T ss_pred             cCCEEEEECCCCCCC-CCCHHHHHhCceEEEEEeccCHHHHHHHHHHHHcCCC--CceEEEEEcH--HHHHHHHHHHHCC
Confidence            999999999755 44 55556677899999998765 4568999999999998  5667789999  9999999999999


Q ss_pred             CCceEEEEeC
Q 020928          310 GNAIKVMFNL  319 (319)
Q Consensus       310 ~~~gkvvi~~  319 (319)
                      +..||+|+++
T Consensus       338 ~~~gKvvl~~  347 (347)
T 1jvb_A          338 KAIGRQVLIP  347 (347)
T ss_dssp             CCCSEEEEEC
T ss_pred             CCcceEEecC
Confidence            8889999974

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.4e-50  Score=359.46  Aligned_cols=301  Identities=20%  Similarity=0.283  Sum_probs=252.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCc-cCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|+++++|...   ...+|.++|||++|+|+++|++|++|++||||++.+.. +|++|.+|++|.+++|+
T Consensus        52 Vkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~  128 (369)
T 1uuf_A           52 IEIAYCGVCHSDLHQVRSEWA---GTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCD  128 (369)
T ss_dssp             EEEEEEECCHHHHHHHHCTTS---CCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCT
T ss_pred             EEEEEEeecHHHHHHhcCCCC---CCCCCeecccCceEEEEEECCCCCCCCCCCEEEEccCCCCCCCCcccCCCCcccCc
Confidence            689999999999999987431   13579999999999999999999999999999987654 69999999999999999


Q ss_pred             Ccc--ccc-----CCCCCCcceeEEeecCCceEeCCCC-CChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHH
Q 020928           80 EMR--FFG-----SPPTNGSLAHKVVHPAKLCYKLPDN-VSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGL  150 (319)
Q Consensus        80 ~~~--~~~-----~~~~~g~~~e~~~~~~~~~~~iP~~-~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~  150 (319)
                      ...  +.+     +....|+|+||+.++++.++++|++ +++++||.++ .+.|||+++++.++++|++|||+|+|++|+
T Consensus       129 ~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~  208 (369)
T 1uuf_A          129 HMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGH  208 (369)
T ss_dssp             TCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHH
T ss_pred             chhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHH
Confidence            762  211     1135799999999999999999999 9999998775 788999999888999999999999999999


Q ss_pred             HHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhh
Q 020928          151 VTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT  230 (319)
Q Consensus       151 ~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l  230 (319)
                      +++|+|+.+|+ +|++++++++++++++++|++.++++..  +++   +.++.    .++|+|||++|++..++.++++|
T Consensus       209 ~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~vi~~~~--~~~---~~~~~----~g~Dvvid~~g~~~~~~~~~~~l  278 (369)
T 1uuf_A          209 MGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRN--ADE---MAAHL----KSFDFILNTVAAPHNLDDFTTLL  278 (369)
T ss_dssp             HHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETTC--HHH---HHTTT----TCEEEEEECCSSCCCHHHHHTTE
T ss_pred             HHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEecccc--HHH---HHHhh----cCCCEEEECCCCHHHHHHHHHHh
Confidence            99999999999 6999999999999999999999987642  222   22232    48999999999876788999999


Q ss_pred             cCCCEEEEecccCCcc-cccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhc
Q 020928          231 RPGGKVCLIGLAKTEM-TVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ  308 (319)
Q Consensus       231 ~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~  308 (319)
                      +++|+++.+|...... .++...+..+++++.++... .++++++++++++|+++  +.+ ++|++  +++++|++.+++
T Consensus       279 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~--~~i-~~~~l--~~~~~A~~~~~~  353 (369)
T 1uuf_A          279 KRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIV--ADI-EMIRA--DQINEAYERMLR  353 (369)
T ss_dssp             EEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHHHHHHHHTCC--CCE-EEECG--GGHHHHHHHHHT
T ss_pred             ccCCEEEEeccCCCCccccCHHHHHhCCcEEEEeecCCHHHHHHHHHHHHhCCCC--cce-EEEcH--HHHHHHHHHHHc
Confidence            9999999999754433 45555677899999998765 45688999999999985  344 56888  999999999999


Q ss_pred             CCCceEEEEeC
Q 020928          309 GGNAIKVMFNL  319 (319)
Q Consensus       309 ~~~~gkvvi~~  319 (319)
                      ++..||+|+++
T Consensus       354 ~~~~gKvvi~~  364 (369)
T 1uuf_A          354 GDVKYRFVIDN  364 (369)
T ss_dssp             TCSSSEEEEEG
T ss_pred             CCCceEEEEec
Confidence            88889999864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=1.6e-50  Score=361.08  Aligned_cols=301  Identities=20%  Similarity=0.305  Sum_probs=255.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCC-CCCCCCEEEEc-cCccCCCCccccCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVK-SLEVGDRVALE-PGISCGHCSLCKAGSYNLC   78 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~-~~~~Gd~V~~~-~~~~~~~~~~~~~~~~~~~   78 (319)
                      |||+++|||++|++.++|...   ..++|.++|||++|+|+++|++|+ +|++||||+.. +..+|++|.+|++|++++|
T Consensus        38 Vkv~a~gi~~~D~~~~~g~~~---~~~~p~v~GhE~~G~V~~vG~~v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C  114 (360)
T 1piw_A           38 IKIEACGVCGSDIHCAAGHWG---NMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYC  114 (360)
T ss_dssp             EEEEEEEECHHHHHHHTTTTS---CCCSSEECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGC
T ss_pred             EEEEEeccchhhHHHhcCCCC---CCCCCcccCcCceEEEEEeCCCCCCCCCCCCEEEEecCCCCCCCChhhcCCCcccC
Confidence            689999999999999987431   135799999999999999999999 99999999654 3468999999999999999


Q ss_pred             CCc-cccc-----CCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHH
Q 020928           79 PEM-RFFG-----SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLV  151 (319)
Q Consensus        79 ~~~-~~~~-----~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~  151 (319)
                      ++. ..++     +....|+|+||+.++++.++++|+++++++||.++ ++.|||++++++++++|++|||+|+|++|++
T Consensus       115 ~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~  194 (360)
T 1piw_A          115 TKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSM  194 (360)
T ss_dssp             TTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHH
T ss_pred             cchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHcCCCCCCEEEEECCCHHHHH
Confidence            876 2221     12357999999999999999999999999998775 6789999998899999999999999999999


Q ss_pred             HHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCC--hHHHHHHHHh
Q 020928          152 TLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGF--DKTMSTALNA  229 (319)
Q Consensus       152 ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~--~~~~~~~~~~  229 (319)
                      ++|+|+.+|+ +|++++++++++++++++|++.++++... .++.+   ++.    .++|+|||++|+  +..++.++++
T Consensus       195 ~~qlak~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~-~~~~~---~~~----~~~D~vid~~g~~~~~~~~~~~~~  265 (360)
T 1piw_A          195 GTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATLEE-GDWGE---KYF----DTFDLIVVCASSLTDIDFNIMPKA  265 (360)
T ss_dssp             HHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGGGT-SCHHH---HSC----SCEEEEEECCSCSTTCCTTTGGGG
T ss_pred             HHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCCEEEcCcCc-hHHHH---Hhh----cCCCEEEECCCCCcHHHHHHHHHH
Confidence            9999999999 69999999999999999999999876432 13322   221    489999999998  5578889999


Q ss_pred             hcCCCEEEEecccCCcc-cccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhh--HHHHHHH
Q 020928          230 TRPGGKVCLIGLAKTEM-TVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKE--IEDAFEI  305 (319)
Q Consensus       230 l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~a~~~  305 (319)
                      |+++|+++.+|.... . .++...++.+++++.++... .+.++++++++++|+++  +.+ ++|++  ++  +++|++.
T Consensus       266 l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~--~~i-~~~~l--~~~~~~~A~~~  339 (360)
T 1piw_A          266 MKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKDIK--IWV-ETLPV--GEAGVHEAFER  339 (360)
T ss_dssp             EEEEEEEEECCCCCS-SCCEEECGGGCBSCEEEECCCCCHHHHHHHHHHHHHTTCC--CCE-EEEES--SHHHHHHHHHH
T ss_pred             hcCCCEEEEecCCCC-ccccCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHhCCCc--ceE-EEEec--cHhHHHHHHHH
Confidence            999999999997554 3 45555677899999998765 45689999999999984  455 88999  99  9999999


Q ss_pred             HhcCCCceEEEEeC
Q 020928          306 SAQGGNAIKVMFNL  319 (319)
Q Consensus       306 ~~~~~~~gkvvi~~  319 (319)
                      +++++..||+|+++
T Consensus       340 ~~~~~~~gKvvi~~  353 (360)
T 1piw_A          340 MEKGDVRYRFTLVG  353 (360)
T ss_dssp             HHHTCCSSEEEEEC
T ss_pred             HHCCCCceEEEEec
Confidence            99988889999974

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-49  Score=351.95  Aligned_cols=306  Identities=20%  Similarity=0.310  Sum_probs=262.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCc-cCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~   79 (319)
                      |||+++|||++|+++++|...  ....+|.++|||++|+|+++|++|++|++||||++.+.. +|+.|.+|.+|++++|+
T Consensus        35 Vkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~  112 (347)
T 2hcy_A           35 INVKYSGVCHTDLHAWHGDWP--LPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCP  112 (347)
T ss_dssp             EEEEEEEECHHHHHHHHTCSS--SCCCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSTTTTTTCGGGCT
T ss_pred             EEEEEEEechhHHHHhcCCCC--CCCCCCcccCccceEEEEEECCCCCCCcCCCEEEEecCCCCCCCChhhhCCCcccCc
Confidence            689999999999999887432  224679999999999999999999999999999986544 59999999999999999


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                      +....+. ..+|+|+||+.++++.++++|+++++++||.++ .+.|||+++++.+++++++|||+|+ |++|++++|+++
T Consensus       113 ~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~  191 (347)
T 2hcy_A          113 HADLSGY-THDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAK  191 (347)
T ss_dssp             TCEEBTT-TBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHHHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHH
T ss_pred             ccccccc-CCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHH
Confidence            8776653 467999999999999999999999999999875 6788999998889999999999996 999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++++++++.+.++++|++.++++.. .+++.+.+.++..  + ++|++||++|....++.++++|+++|+++
T Consensus       192 ~~Ga-~V~~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~~~~~~~--~-~~D~vi~~~g~~~~~~~~~~~l~~~G~iv  266 (347)
T 2hcy_A          192 AMGY-RVLGIDGGEGKEELFRSIGGEVFIDFTK-EKDIVGAVLKATD--G-GAHGVINVSVSEAAIEASTRYVRANGTTV  266 (347)
T ss_dssp             HTTC-EEEEEECSTTHHHHHHHTTCCEEEETTT-CSCHHHHHHHHHT--S-CEEEEEECSSCHHHHHHHTTSEEEEEEEE
T ss_pred             HCCC-cEEEEcCCHHHHHHHHHcCCceEEecCc-cHhHHHHHHHHhC--C-CCCEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            9999 7888988999999999999988887642 3466666665542  3 89999999998668899999999999999


Q ss_pred             EecccC-CcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCceEE
Q 020928          238 LIGLAK-TEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKV  315 (319)
Q Consensus       238 ~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  315 (319)
                      .+|... ....++...++.+++++.++... .++++++++++++|++++  . .++|++  +++++|++.+++++..||+
T Consensus       267 ~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~--~-~~~~~l--~~~~~A~~~~~~~~~~gKv  341 (347)
T 2hcy_A          267 LVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFARGLVKS--P-IKVVGL--STLPEIYEKMEKGQIVGRY  341 (347)
T ss_dssp             ECCCCTTCEEEEEHHHHHHTTCEEEECCCCCHHHHHHHHHHHHTTSCCC--C-EEEEEG--GGHHHHHHHHHTTCCSSEE
T ss_pred             EEeCCCCCCCCCCHHHHhhCCcEEEEccCCCHHHHHHHHHHHHhCCCcc--c-eEEEcH--HHHHHHHHHHHcCCcceeE
Confidence            998754 23445556677899999998764 456889999999999954  3 478899  9999999999998888999


Q ss_pred             EEeC
Q 020928          316 MFNL  319 (319)
Q Consensus       316 vi~~  319 (319)
                      |+++
T Consensus       342 vv~~  345 (347)
T 2hcy_A          342 VVDT  345 (347)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            9974

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=3.7e-51  Score=364.70  Aligned_cols=299  Identities=19%  Similarity=0.291  Sum_probs=256.8

Q ss_pred             CCcceEeeccCCccccccccccccccCC---CcccccceeEEEEEeCCCCCCCCCCCEEEEccCcc--CCCCccccCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKK---PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGIS--CGHCSLCKAGSY   75 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~---p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~--~~~~~~~~~~~~   75 (319)
                      |||+++|||++|+++++|....   .++   |.++|||++| |+++|++ ++|++||||++.+..+  |++|.+|++|++
T Consensus        30 Vkv~a~gi~~~D~~~~~g~~~~---~~~~~~p~v~G~E~~G-V~~vG~~-~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~  104 (357)
T 2b5w_A           30 VRTLRVGVCGTDHEVIAGGHGG---FPEGEDHLVLGHEAVG-VVVDPND-TELEEGDIVVPTVRRPPASGTNEYFERDQP  104 (357)
T ss_dssp             EEEEEEEECHHHHHHHHSCSTT---SCTTCSEEECCSEEEE-EEEECTT-SSCCTTCEEEECSEECCTTCCCHHHHTTCG
T ss_pred             EEEeEEeechhcHHHHcCCCCC---CCCCCCCcccCceeEE-EEEECCC-CCCCCCCEEEECCcCCCCCCCChHHhCcCc
Confidence            6899999999999999875311   345   8999999999 9999999 9999999999988777  999999999999


Q ss_pred             CCCCCcccc--cCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCC------CeEEEECCCH
Q 020928           76 NLCPEMRFF--GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPE------TNVMIMGSGP  147 (319)
Q Consensus        76 ~~~~~~~~~--~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~------~~vlI~G~g~  147 (319)
                      ++|++..++  +....+|+|+||+.++++.++++|++++ ++|++..++.|||++++++++++|      ++|||+|+|+
T Consensus       105 ~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~~aal~~~~~ta~~al~~~~~~~g~~~~~~~~VlV~GaG~  183 (357)
T 2b5w_A          105 DMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGS  183 (357)
T ss_dssp             GGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-TTGGGHHHHHHHHHHHHHHHHTTTTSCCCCCEEEEECCSH
T ss_pred             ccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-hhhhhhchHHHHHHHHHhcCCCCCcccCCCCEEEEECCCH
Confidence            999987765  4323579999999999999999999999 777766789999999988889999      9999999999


Q ss_pred             HHHHH-HHHH-HHcCCCeEEEecCChh---HHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHH
Q 020928          148 IGLVT-LLAA-RAFGAPRIIITDVDVQ---RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKT  222 (319)
Q Consensus       148 vG~~a-i~la-~~~g~~~vv~v~~~~~---~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~  222 (319)
                      +|+++ +|+| +.+|+++|++++++++   ++++++++|++++ ++.  .+++.+ +.++   .+ ++|+|||++|++..
T Consensus       184 vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~--~~~~~~-i~~~---~g-g~Dvvid~~g~~~~  255 (357)
T 2b5w_A          184 LGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSR--QTPVED-VPDV---YE-QMDFIYEATGFPKH  255 (357)
T ss_dssp             HHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETT--TSCGGG-HHHH---SC-CEEEEEECSCCHHH
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCC--ccCHHH-HHHh---CC-CCCEEEECCCChHH
Confidence            99999 9999 9999966999999998   9999999999988 764  345555 5554   24 89999999998778


Q ss_pred             HHHHHHhhcCCCEEEEecccC-CcccccchHH----HhcCcEEEEeecc-CCCHHHHHHHHHcC--CCCCCCceeeeecC
Q 020928          223 MSTALNATRPGGKVCLIGLAK-TEMTVALTPA----AAREVDVIGIFRY-RSTWPLCIEFLRSG--KIDVKPLITHRFGF  294 (319)
Q Consensus       223 ~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~----~~~~~~i~~~~~~-~~~~~~~~~~~~~g--~~~~~~~~~~~~~~  294 (319)
                      +..++++++++|+++.+|... ....++...+    ..+++++.++... .++++++++++++|  ++ +.+.++++|++
T Consensus       256 ~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~~~~-~~~~i~~~~~l  334 (357)
T 2b5w_A          256 AIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVEHFEAATVTFTKLPKWF-LEDLVTGVHPL  334 (357)
T ss_dssp             HHHHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHHHHSCHHH-HHHHEEEEEEG
T ss_pred             HHHHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEeccCCHHHHHHHHHHHHhCchhh-hhhhcceeecH
Confidence            899999999999999999755 4445555556    7899999998765 45789999999999  85 57788899999


Q ss_pred             ChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          295 TQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       295 ~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                        +++++|++.+   ...||+|+++
T Consensus       335 --~~~~~A~~~~---~~~gKvvi~~  354 (357)
T 2b5w_A          335 --SEFEAAFDDD---DTTIKTAIEF  354 (357)
T ss_dssp             --GGGGGGGCCS---TTCCEEEEEC
T ss_pred             --HHHHHHHHHh---CCCceEEEEe
Confidence              9999999988   3578999874

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=1.3e-49  Score=354.61  Aligned_cols=300  Identities=21%  Similarity=0.329  Sum_probs=253.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC-ccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|++.++|...   ...+|.++|||++|+|+++|++|++|++||||++.+. .+|++|.+|.+|.+++|+
T Consensus        39 Vkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~  115 (357)
T 2cf5_A           39 IRIICCGICHTDLHQTKNDLG---MSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCP  115 (357)
T ss_dssp             EEEEEEEECHHHHHHHTCTTT---CCCSSBCCCCEEEEEEEEECSSCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCT
T ss_pred             EEEEEEeecchhhhhhcCCCC---CCCCCeecCcceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCC
Confidence            689999999999999987431   1367999999999999999999999999999987543 479999999999999997


Q ss_pred             Cccccc------CCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCC-CCCeEEEECCCHHHHH
Q 020928           80 EMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVG-PETNVMIMGSGPIGLV  151 (319)
Q Consensus        80 ~~~~~~------~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~-~~~~vlI~G~g~vG~~  151 (319)
                      ...+..      .....|+|+||+.++++.++++|+++++++||.++ .+.|||+++++.+++ +|++|||+|+|++|++
T Consensus       116 ~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~  195 (357)
T 2cf5_A          116 KKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHM  195 (357)
T ss_dssp             TCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHH
T ss_pred             CccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHH
Confidence            654321      12357999999999999999999999999999875 678999999888898 9999999999999999


Q ss_pred             HHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhh
Q 020928          152 TLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT  230 (319)
Q Consensus       152 ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l  230 (319)
                      ++|+|+.+|+ +|++++++++++++++ ++|++.++++..  .   +.+.++.    .++|+|||++|++..++.+++++
T Consensus       196 a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~--~---~~~~~~~----~g~D~vid~~g~~~~~~~~~~~l  265 (357)
T 2cf5_A          196 GVKIAKAMGH-HVTVISSSNKKREEALQDLGADDYVIGSD--Q---AKMSELA----DSLDYVIDTVPVHHALEPYLSLL  265 (357)
T ss_dssp             HHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSCEEETTC--H---HHHHHST----TTEEEEEECCCSCCCSHHHHTTE
T ss_pred             HHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCceeecccc--H---HHHHHhc----CCCCEEEECCCChHHHHHHHHHh
Confidence            9999999999 7999999999998888 899999887642  1   2333332    37999999999865688899999


Q ss_pred             cCCCEEEEecccCCccc-ccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhc
Q 020928          231 RPGGKVCLIGLAKTEMT-VALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ  308 (319)
Q Consensus       231 ~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~  308 (319)
                      +++|+++.+|....... ++.. +..+++++.++... .++++++++++++|++++  .+ ++|++  +++++|++.+++
T Consensus       266 ~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~--~~-~~~~l--~~~~~A~~~~~~  339 (357)
T 2cf5_A          266 KLDGKLILMGVINNPLQFLTPL-LMLGRKVITGSFIGSMKETEEMLEFCKEKGLSS--II-EVVKM--DYVNTAFERLEK  339 (357)
T ss_dssp             EEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEECCSCCHHHHHHHHHHHHHTTCCC--CE-EEEEG--GGHHHHHHHHHT
T ss_pred             ccCCEEEEeCCCCCCccccCHH-HHhCccEEEEEccCCHHHHHHHHHHHHcCCCCC--ce-EEEeH--HHHHHHHHHHHC
Confidence            99999999997543333 4444 77899999998765 456889999999999953  34 68899  999999999999


Q ss_pred             CCCceEEEEeC
Q 020928          309 GGNAIKVMFNL  319 (319)
Q Consensus       309 ~~~~gkvvi~~  319 (319)
                      ++..||+|+++
T Consensus       340 ~~~~gKvvi~~  350 (357)
T 2cf5_A          340 NDVRYRFVVDV  350 (357)
T ss_dssp             TCSSSEEEEET
T ss_pred             CCCceEEEEeC
Confidence            98889999974

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=5.2e-49  Score=351.48  Aligned_cols=299  Identities=22%  Similarity=0.257  Sum_probs=256.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|....  ..++|.++|||++|+|+++|++|++|++||||++.+..      .|..|. ++|..
T Consensus        58 Vkv~a~gi~~~D~~~~~g~~~~--~~~~P~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~------~c~~g~-~~c~~  128 (363)
T 3uog_A           58 VRTLAVSLNYRDKLVLETGMGL--DLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAP------GWLDGL-RPGTG  128 (363)
T ss_dssp             EEEEEEECCHHHHHHHHHCTTC--CCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSST------TCCSSS-CCSCS
T ss_pred             EEEEEEecCHHHHHHhcCCCCC--CCCCCcCcccceEEEEEEECCCCCCCCCCCEEEEeccc------cccccc-ccccc
Confidence            6899999999999999875421  34789999999999999999999999999999986533      567777 77863


Q ss_pred             ---cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEECCCHHHHHHHHH
Q 020928           81 ---MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLA  155 (319)
Q Consensus        81 ---~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G~g~vG~~ai~l  155 (319)
                         .....+...+|+|+||+.++++.++++|+++++++||+++ ++.|||+++ +.+++++|++|||+|+|++|++++|+
T Consensus       129 ~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~ql  208 (363)
T 3uog_A          129 RTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQI  208 (363)
T ss_dssp             SCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHH
T ss_pred             ccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHH
Confidence               1110123467999999999999999999999999999886 678999999 56999999999999999999999999


Q ss_pred             HHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCE
Q 020928          156 ARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK  235 (319)
Q Consensus       156 a~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~  235 (319)
                      |+..|+ +|++++++++++++++++|++.+++  ...+++.+.+.+++  .+.++|++|||+|+. .+..++++++++|+
T Consensus       209 a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~--~~~~~~~~~v~~~~--~g~g~D~vid~~g~~-~~~~~~~~l~~~G~  282 (363)
T 3uog_A          209 AKATGA-EVIVTSSSREKLDRAFALGADHGIN--RLEEDWVERVYALT--GDRGADHILEIAGGA-GLGQSLKAVAPDGR  282 (363)
T ss_dssp             HHHTTC-EEEEEESCHHHHHHHHHHTCSEEEE--TTTSCHHHHHHHHH--TTCCEEEEEEETTSS-CHHHHHHHEEEEEE
T ss_pred             HHHcCC-EEEEEecCchhHHHHHHcCCCEEEc--CCcccHHHHHHHHh--CCCCceEEEECCChH-HHHHHHHHhhcCCE
Confidence            999999 7999999999999999999999987  33457777776665  356899999999965 88999999999999


Q ss_pred             EEEecccCC-cccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCce
Q 020928          236 VCLIGLAKT-EMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAI  313 (319)
Q Consensus       236 ~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g  313 (319)
                      ++.+|.... ...++...+..+++++.++... .+.++++++++++|++  ++.++++|++  +++++|++.++++. .|
T Consensus       283 iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l--~~~~~A~~~~~~~~-~g  357 (363)
T 3uog_A          283 ISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRALEDLVGAVDRLGL--KPVIDMRYKF--TEVPEALAHLDRGP-FG  357 (363)
T ss_dssp             EEEECCCSSCEECCBTTHHHHTCCEEEECCCCCHHHHHHHHHHHHHHTC--CCCEEEEEEG--GGHHHHHHTGGGCC-SB
T ss_pred             EEEEecCCCcccCcCHHHHHhCCcEEEEEecCCHHHHHHHHHHHHcCCC--ccceeeEEcH--HHHHHHHHHHHcCC-Cc
Confidence            999997544 3466677788999999998776 4678999999999987  6788899999  99999999999998 99


Q ss_pred             EEEEeC
Q 020928          314 KVMFNL  319 (319)
Q Consensus       314 kvvi~~  319 (319)
                      |+|+++
T Consensus       358 Kvvi~~  363 (363)
T 3uog_A          358 KVVIEF  363 (363)
T ss_dssp             EEEEEC
T ss_pred             cEEEeC
Confidence            999986

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=1.1e-48  Score=349.70  Aligned_cols=300  Identities=22%  Similarity=0.292  Sum_probs=253.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC-ccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|+++++|...   ...+|.++|||++|+|+++|++|++|++||||++.+. .+|++|.+|.+|.+++|+
T Consensus        46 Vkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~  122 (366)
T 1yqd_A           46 FKVLYCGVCHSDLHSIKNDWG---FSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCP  122 (366)
T ss_dssp             EEEEEEEECHHHHHHHHTSSS---CCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCT
T ss_pred             EEEEEEeechhhHHHHcCCCC---CCCCCEecccceEEEEEEECCCCCcCCCCCEEEEcCCcCCCCCChhhhCcCcccCC
Confidence            689999999999999887431   1357999999999999999999999999999987543 489999999999999996


Q ss_pred             Cccccc------CCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCC-CCCeEEEECCCHHHHH
Q 020928           80 EMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVG-PETNVMIMGSGPIGLV  151 (319)
Q Consensus        80 ~~~~~~------~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~-~~~~vlI~G~g~vG~~  151 (319)
                      ...+..      .....|+|+||+.++++.++++|+++++++||.++ .+.|||+++++.+++ +|++|||+|+|++|++
T Consensus       123 ~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~  202 (366)
T 1yqd_A          123 KMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHV  202 (366)
T ss_dssp             TCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHH
T ss_pred             cccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhhhhHHHHHHHHHhcCcCCCCCEEEEECCCHHHHH
Confidence            553211      12357999999999999999999999999999775 678999999888888 9999999999999999


Q ss_pred             HHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhh
Q 020928          152 TLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT  230 (319)
Q Consensus       152 ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l  230 (319)
                      ++|+|+.+|+ +|+++++++++.+.++ ++|++.++++..  .   +.+.++.    .++|+|||++|++..++.++++|
T Consensus       203 ~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~--~---~~~~~~~----~~~D~vid~~g~~~~~~~~~~~l  272 (366)
T 1yqd_A          203 AVKFAKAFGS-KVTVISTSPSKKEEALKNFGADSFLVSRD--Q---EQMQAAA----GTLDGIIDTVSAVHPLLPLFGLL  272 (366)
T ss_dssp             HHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSEEEETTC--H---HHHHHTT----TCEEEEEECCSSCCCSHHHHHHE
T ss_pred             HHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCceEEeccC--H---HHHHHhh----CCCCEEEECCCcHHHHHHHHHHH
Confidence            9999999999 7888999999988877 899999887642  1   2333332    37999999999865678899999


Q ss_pred             cCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcC
Q 020928          231 RPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQG  309 (319)
Q Consensus       231 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  309 (319)
                      +++|+++.+|.......++...++.+++++.++... .++++++++++++|++++  .+ ++|++  +++++|++.++++
T Consensus       273 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~--~~-~~~~l--~~~~~A~~~~~~~  347 (366)
T 1yqd_A          273 KSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNITA--DI-EVIST--DYLNTAMERLAKN  347 (366)
T ss_dssp             EEEEEEEECCCCSSCEEECHHHHHTTTCEEEECCSCCHHHHHHHHHHHHHTTCCC--CE-EEECG--GGHHHHHHHHHTT
T ss_pred             hcCCEEEEEccCCCCCCcCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCCCC--ce-EEEcH--HHHHHHHHHHHcC
Confidence            999999999976544455666678899999998765 456889999999999954  34 68888  9999999999999


Q ss_pred             CCceEEEEe
Q 020928          310 GNAIKVMFN  318 (319)
Q Consensus       310 ~~~gkvvi~  318 (319)
                      +..||+|++
T Consensus       348 ~~~gKvvl~  356 (366)
T 1yqd_A          348 DVRYRFVID  356 (366)
T ss_dssp             CCSSEEEEC
T ss_pred             CcceEEEEE
Confidence            888999986

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=7e-49  Score=351.15  Aligned_cols=299  Identities=19%  Similarity=0.323  Sum_probs=253.3

Q ss_pred             CCcceEeeccCCcccccc--ccccccccCC---CcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQT--MRCANFIVKK---PMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY   75 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~--~~~~~~~~~~---p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~   75 (319)
                      |||.++|||++|+++++|  ...   ..++   |.++|||++|+|++  ++ ++|++||||++.+..+|++|.+|.+|++
T Consensus        31 Vkv~a~gi~~~D~~~~~g~~~~~---~~~~~~~p~v~G~E~~G~V~~--~~-~~~~~GDrV~~~~~~~cg~C~~C~~g~~  104 (366)
T 2cdc_A           31 IRTIYNGICGADREIVNGKLTLS---TLPKGKDFLVLGHEAIGVVEE--SY-HGFSQGDLVMPVNRRGCGICRNCLVGRP  104 (366)
T ss_dssp             EEEEEEEECHHHHHHHTTCC----------CCSCEECCSEEEEEECS--CC-SSCCTTCEEEECSEECCSSSHHHHTTCG
T ss_pred             EEEEEEeeccccHHHHcCCCCCC---CCCcCCCCCcCCcceEEEEEe--CC-CCCCCCCEEEEcCCCCCCCChhhhCcCc
Confidence            689999999999999987  321   1345   99999999999999  77 8999999999999889999999999999


Q ss_pred             CCCCCcccc--cCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHH-----hcCCC--C-------CCe
Q 020928           76 NLCPEMRFF--GSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACR-----RANVG--P-------ETN  139 (319)
Q Consensus        76 ~~~~~~~~~--~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~-----~~~~~--~-------~~~  139 (319)
                      ++|++..++  +.....|+|+||+.++++.++++|++++ ++|+++.++.|||++++     .++++  +       |++
T Consensus       105 ~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~Aal~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~  183 (366)
T 2cdc_A          105 DFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRK  183 (366)
T ss_dssp             GGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTGGGHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCE
T ss_pred             ccCCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhhhhcCcHHHHHHHHHhhhhcccCccccccccccCCCCE
Confidence            999987655  3321479999999999999999999999 88876678999999997     78898  8       999


Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCCh---hHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDV---QRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~---~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      |||+|+|++|++++|+|+..|+ +|+++++++   ++.++++++|++.+ + ..   ++.+.+.+ .   +.++|++||+
T Consensus       184 VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-~~---~~~~~~~~-~---~~~~d~vid~  253 (366)
T 2cdc_A          184 VLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY-N-SS---NGYDKLKD-S---VGKFDVIIDA  253 (366)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE-E-CT---TCSHHHHH-H---HCCEEEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee-c-hH---HHHHHHHH-h---CCCCCEEEEC
Confidence            9999999999999999999999 899999988   89999999999887 5 32   55555554 3   2689999999


Q ss_pred             cCChHHH-HHHHHhhcCCCEEEEecccCCc-ccccchH---HHhcCcEEEEeecc-CCCHHHHHHHHHcCCCC----CCC
Q 020928          217 VGFDKTM-STALNATRPGGKVCLIGLAKTE-MTVALTP---AAAREVDVIGIFRY-RSTWPLCIEFLRSGKID----VKP  286 (319)
Q Consensus       217 ~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~---~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~----~~~  286 (319)
                      +|++..+ +.++++|+++|+++.+|..... ..++...   ++.+++++.++... .+.++++++++++|+++    +.+
T Consensus       254 ~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~~~~~~  333 (366)
T 2cdc_A          254 TGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKM  333 (366)
T ss_dssp             CCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHHHHHHHHSHHHHTT
T ss_pred             CCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEecCCCHHHHHHHHHHHHcCCCCcccchhh
Confidence            9987677 8999999999999999975543 4555555   78899999998765 45789999999999976    678


Q ss_pred             ceeeeecCChhhHHHHHHH--HhcCCCceEEEEeC
Q 020928          287 LITHRFGFTQKEIEDAFEI--SAQGGNAIKVMFNL  319 (319)
Q Consensus       287 ~~~~~~~~~~~~~~~a~~~--~~~~~~~gkvvi~~  319 (319)
                      .++++|++  +++++|++.  ++ +...||+|+++
T Consensus       334 ~i~~~~~l--~~~~~A~~~l~~~-~~~~gKvvi~~  365 (366)
T 2cdc_A          334 LITKTVSI--NDEKELLKVLREK-EHGEIKIRILW  365 (366)
T ss_dssp             SEEEEEET--TCHHHHHHHHHCC-CTTCCEEEEEC
T ss_pred             cEEEEEcH--HHHHHHHHHHhhh-cCCceEEEEec
Confidence            88899999  999999999  55 56789999975

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=3.4e-47  Score=348.95  Aligned_cols=312  Identities=19%  Similarity=0.204  Sum_probs=255.7

Q ss_pred             CCcceEeeccCCcccccc------------cccccc--ccCCC-cccccceeEEEEEeCCCCCCCCCCCEEEEccCccCC
Q 020928            1 MPKAVTAYCMQNVVYDQT------------MRCANF--IVKKP-MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG   65 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~------------~~~~~~--~~~~p-~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~   65 (319)
                      |||+++|||++|++...+            ...+.+  ..++| .++|||++|+|+++|++|++|++||||++.+...|+
T Consensus        67 VrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~  146 (447)
T 4a0s_A           67 VAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDE  146 (447)
T ss_dssp             EEEEEEECCHHHHHHHTTCSSCHHHHHHHHHTTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCT
T ss_pred             EEEEEEEECcHHhhhhccCcccchhhhhhhcccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcC
Confidence            689999999999854221            001111  12456 799999999999999999999999999998888888


Q ss_pred             CCccccCCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH---hcCCCCCCeEE
Q 020928           66 HCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR---RANVGPETNVM  141 (319)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~---~~~~~~~~~vl  141 (319)
                      .|++| .+.++.|+...+++.....|+|+||+.++++.++++|+++++++||+++ ++.|||+++.   .+++++|++||
T Consensus       147 ~~~~~-~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~Vl  225 (447)
T 4a0s_A          147 QEPAT-HGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVL  225 (447)
T ss_dssp             TSGGG-GTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEE
T ss_pred             ccccc-ccccccccccccccccCCCCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEE
Confidence            77755 5789999998888776567999999999999999999999999999885 6789999983   38999999999


Q ss_pred             EECC-CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCc-------------chhHHHHHhhhhcC
Q 020928          142 IMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE-------------DVDTDVGKIQNAMG  207 (319)
Q Consensus       142 I~G~-g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~-------------~~~~~i~~~~~~~~  207 (319)
                      |+|+ |++|++++|+|+..|+ ++++++++++++++++++|++.++++...+-             ++......+.+..+
T Consensus       226 V~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g  304 (447)
T 4a0s_A          226 IWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAG  304 (447)
T ss_dssp             ETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHS
T ss_pred             EECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhC
Confidence            9996 9999999999999999 6778889999999999999998887532110             00011223333236


Q ss_pred             CCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCC-cccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 020928          208 SGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVK  285 (319)
Q Consensus       208 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~  285 (319)
                      .++|++||++|++ .++.++++++++|+++.+|.... ...++...++.+++++.++... .+++.++++++++|++  +
T Consensus       305 ~g~Dvvid~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l--~  381 (447)
T 4a0s_A          305 REPDIVFEHTGRV-TFGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQATNRLFESGAV--V  381 (447)
T ss_dssp             SCCSEEEECSCHH-HHHHHHHHSCTTCEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSS--C
T ss_pred             CCceEEEECCCch-HHHHHHHHHhcCCEEEEEecCCCcccccCHHHHHhCCCEEEecCCCCHHHHHHHHHHHHcCCc--c
Confidence            7899999999985 88999999999999999996543 3455666788899999998765 3467789999999999  5


Q ss_pred             CceeeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          286 PLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       286 ~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +.++++|++  +++++|++.+.+++..||+++.+
T Consensus       382 ~~i~~~~~l--~~~~~A~~~~~~~~~~GKvvv~~  413 (447)
T 4a0s_A          382 PAMSAVYPL--AEAAEACRVVQTSRQVGKVAVLC  413 (447)
T ss_dssp             CCEEEEEEG--GGHHHHHHHHHTTCCSSEEEEES
T ss_pred             cceeEEEcH--HHHHHHHHHHhcCCCceEEEEEe
Confidence            678899999  99999999999999999998863

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=2.6e-47  Score=350.11  Aligned_cols=310  Identities=21%  Similarity=0.194  Sum_probs=259.6

Q ss_pred             CCcceEeeccCCccccccccc------------cc--cccCCC-cccccceeEEEEEeCCCCCCCCCCCEEEEccCccCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRC------------AN--FIVKKP-MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG   65 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~------------~~--~~~~~p-~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~   65 (319)
                      |||.++|||++|++...+...            +.  ....+| .++|||++|+|+++|++|++|++||||++.. ..|+
T Consensus        75 VkV~a~gic~sD~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~-~~c~  153 (456)
T 3krt_A           75 VAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHC-LSVE  153 (456)
T ss_dssp             EEEEEEEECHHHHHHHTTCSSCSHHHHHHHHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECC-EECC
T ss_pred             EEEEEEEecchhhhhhhcCcccchhhhhhccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeC-Cccc
Confidence            689999999999876532110            11  112467 6999999999999999999999999999853 3688


Q ss_pred             CCccccCCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh---cCCCCCCeEE
Q 020928           66 HCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR---ANVGPETNVM  141 (319)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~---~~~~~~~~vl  141 (319)
                      .|..|..+.+++|+...+++.....|+|+||++++++.++++|+++++++||+++ ++.|||+++..   +++++|++||
T Consensus       154 ~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~Vl  233 (456)
T 3krt_A          154 LESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVL  233 (456)
T ss_dssp             CCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEE
T ss_pred             ccccccccccccCccccccccCCCCCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEE
Confidence            8999999999999998888876667999999999999999999999999999886 78899999843   7899999999


Q ss_pred             EECC-CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCc---------------chhHHHHHhhhh
Q 020928          142 IMGS-GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE---------------DVDTDVGKIQNA  205 (319)
Q Consensus       142 I~G~-g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~---------------~~~~~i~~~~~~  205 (319)
                      |+|+ |++|++++|+|+..|+ +++++++++++.++++++|++.++++...+.               ++.+.+++++  
T Consensus       234 V~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t--  310 (456)
T 3krt_A          234 IWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELT--  310 (456)
T ss_dssp             ETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHH--
T ss_pred             EECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHh--
Confidence            9996 9999999999999999 6777778999999999999999988754321               1123444443  


Q ss_pred             cCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCC-cccccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCCCC
Q 020928          206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKID  283 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~  283 (319)
                      .+.++|+|||++|+ +.+..++++++++|+++.+|.... ...++...+..+.+++.++... .+++.++++++++|++ 
T Consensus       311 ~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l-  388 (456)
T 3krt_A          311 GGEDIDIVFEHPGR-ETFGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFANYREAWEANRLIAKGRI-  388 (456)
T ss_dssp             TSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSS-
T ss_pred             CCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEEecCCCcccccCHHHHHhcCeEEEEeccCCHHHHHHHHHHHHcCCc-
Confidence            35789999999998 589999999999999999996543 3456667788899999998765 3456789999999999 


Q ss_pred             CCCceeeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          284 VKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                       ++.++++|++  +++++|++.+.+++..||+|+.+
T Consensus       389 -~~~i~~~~~l--~~~~eA~~~l~~~~~~GKvvv~~  421 (456)
T 3krt_A          389 -HPTLSKVYSL--EDTGQAAYDVHRNLHQGKVGVLC  421 (456)
T ss_dssp             -CCCEEEEEEG--GGHHHHHHHHHTTCSSSEEEEES
T ss_pred             -ccceeEEEcH--HHHHHHHHHHHhCCCCCcEEEEe
Confidence             5678899999  99999999999999999999863

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=1.3e-45  Score=328.23  Aligned_cols=278  Identities=22%  Similarity=0.314  Sum_probs=242.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|...  .+..+|.++|||++|+|+++|++|++|++||||++..                    
T Consensus        60 Vkv~a~gi~~~D~~~~~g~~~--~~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~--------------------  117 (353)
T 4dup_A           60 VRAEAIGVNRPDIAQRQGSYP--PPKDASPILGLELSGEIVGVGPGVSGYAVGDKVCGLA--------------------  117 (353)
T ss_dssp             EEEEEEEECHHHHHHHTTSSC--CCTTSCSSSCCEEEEEEEEECTTCCSCCTTCEEEEEC--------------------
T ss_pred             EEEEEEecCHHHHHHhCCCCC--CCCCCCCccccccEEEEEEECCCCCCCCCCCEEEEec--------------------
Confidence            689999999999999987542  2235799999999999999999999999999998742                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHH-HhcCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                              ..|+|+||+.++++.++++|+++++++||.+ .++.|||+++ +.++++++++|||+| +|++|++++|+|+
T Consensus       118 --------~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~  189 (353)
T 4dup_A          118 --------NGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLAR  189 (353)
T ss_dssp             --------SSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHH
T ss_pred             --------CCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence                    3699999999999999999999999999977 4889999999 569999999999995 7999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++++++++.++++++|++.++++.  ..++.+.+.++.   +.++|++|||+|++ .+..++++|+++|+++
T Consensus       190 ~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~--~~~~~~~~~~~~---~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv  262 (353)
T 4dup_A          190 AFGA-EVYATAGSTGKCEACERLGAKRGINYR--SEDFAAVIKAET---GQGVDIILDMIGAA-YFERNIASLAKDGCLS  262 (353)
T ss_dssp             HTTC-EEEEEESSHHHHHHHHHHTCSEEEETT--TSCHHHHHHHHH---SSCEEEEEESCCGG-GHHHHHHTEEEEEEEE
T ss_pred             HcCC-EEEEEeCCHHHHHHHHhcCCCEEEeCC--chHHHHHHHHHh---CCCceEEEECCCHH-HHHHHHHHhccCCEEE
Confidence            9999 799999999999999999999998864  346666666554   67899999999986 7889999999999999


Q ss_pred             EecccCCc-cc-ccchHHHhcCcEEEEeeccCC-C----------HHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHH
Q 020928          238 LIGLAKTE-MT-VALTPAAAREVDVIGIFRYRS-T----------WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE  304 (319)
Q Consensus       238 ~~g~~~~~-~~-~~~~~~~~~~~~i~~~~~~~~-~----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~  304 (319)
                      .+|..... .. ++...+..+++++.++..... .          ++++++++++|++  ++.++++|++  +++++|++
T Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l--~~~~~A~~  338 (353)
T 4dup_A          263 IIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTV--APVIHKVFAF--EDVADAHR  338 (353)
T ss_dssp             ECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSS--CCCEEEEEEG--GGHHHHHH
T ss_pred             EEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCc--cCCcceEEeH--HHHHHHHH
Confidence            99965433 23 667778899999999876522 1          6789999999998  6778899999  99999999


Q ss_pred             HHhcCCCceEEEEeC
Q 020928          305 ISAQGGNAIKVMFNL  319 (319)
Q Consensus       305 ~~~~~~~~gkvvi~~  319 (319)
                      .+++++..||+|+++
T Consensus       339 ~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          339 LLEEGSHVGKVMLTV  353 (353)
T ss_dssp             HHHHTCCSSEEEEEC
T ss_pred             HHHhCCCCceEEEeC
Confidence            999999999999985

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=4.3e-45  Score=322.83  Aligned_cols=276  Identities=23%  Similarity=0.299  Sum_probs=237.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|..    +.++|+++|||++|+|+++|++|++|++||||++.                     
T Consensus        40 Vkv~a~gi~~~D~~~~~G~~----~~~~P~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~---------------------   94 (334)
T 3qwb_A           40 IKNKYTGVNYIESYFRKGIY----PCEKPYVLGREASGTVVAKGKGVTNFEVGDQVAYI---------------------   94 (334)
T ss_dssp             EEEEEEECCTTHHHHHHTSS----CCCSSEECCSEEEEEEEEECTTCCSCCTTCEEEEE---------------------
T ss_pred             EEEEEEecCHHHHHHHCCCC----CCCCCCccccceEEEEEEECCCCCCCCCCCEEEEe---------------------
Confidence            68999999999999988754    34679999999999999999999999999999864                     


Q ss_pred             cccccCCCCCCcceeEEeec-CCceEeCCCCCChhh---hhcc-chhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHP-AKLCYKLPDNVSLEE---GAMC-EPLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTL  153 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~-~~~~~~iP~~~~~~~---aa~~-~~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai  153 (319)
                              .+|+|+||+.++ ++.++++|+++++++   |+.+ ....+||+++.+ +++++|++|||+| +|++|++++
T Consensus        95 --------~~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~  166 (334)
T 3qwb_A           95 --------SNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILN  166 (334)
T ss_dssp             --------CSSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHH
T ss_pred             --------eCCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHH
Confidence                    269999999999 999999999999999   6655 467889999865 7999999999998 799999999


Q ss_pred             HHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCC
Q 020928          154 LAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG  233 (319)
Q Consensus       154 ~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~  233 (319)
                      |+|+..|+ +|++++++++++++++++|++.++++.  .+++.+.+.++.  .+.++|++|||+|+. .++.++++|+++
T Consensus       167 ~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~--~~~~~~~~~~~~--~~~g~D~vid~~g~~-~~~~~~~~l~~~  240 (334)
T 3qwb_A          167 QLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINAS--KEDILRQVLKFT--NGKGVDASFDSVGKD-TFEISLAALKRK  240 (334)
T ss_dssp             HHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETT--TSCHHHHHHHHT--TTSCEEEEEECCGGG-GHHHHHHHEEEE
T ss_pred             HHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEeCC--CchHHHHHHHHh--CCCCceEEEECCChH-HHHHHHHHhccC
Confidence            99999999 799999999999999999999998864  356666666654  356899999999985 889999999999


Q ss_pred             CEEEEecccCCc-ccccchHHHhcCcEEEEeecc---------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHH
Q 020928          234 GKVCLIGLAKTE-MTVALTPAAAREVDVIGIFRY---------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAF  303 (319)
Q Consensus       234 G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~  303 (319)
                      |+++.+|..... ..++...+..+++++.++...         .+.++++++++++|+++  +.++++|++  +++++|+
T Consensus       241 G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l--~~~~~A~  316 (334)
T 3qwb_A          241 GVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLN--IKIYKTYPL--RDYRTAA  316 (334)
T ss_dssp             EEEEECCCTTCCCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSC--CCEEEEEEG--GGHHHHH
T ss_pred             CEEEEEcCCCCCCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCcc--CceeeEEcH--HHHHHHH
Confidence            999999975433 255666777899999876432         12346899999999995  447889999  9999999


Q ss_pred             HHHhcCCCceEEEEeC
Q 020928          304 EISAQGGNAIKVMFNL  319 (319)
Q Consensus       304 ~~~~~~~~~gkvvi~~  319 (319)
                      +.+++++..||+|+++
T Consensus       317 ~~~~~~~~~gKvvi~~  332 (334)
T 3qwb_A          317 ADIESRKTVGKLVLEI  332 (334)
T ss_dssp             HHHHTTCCCBEEEEEC
T ss_pred             HHHHhCCCceEEEEec
Confidence            9999999999999975

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=1.9e-44  Score=320.07  Aligned_cols=276  Identities=19%  Similarity=0.232  Sum_probs=235.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++++.|.     ...+|.++|||++|+|+++|++|++|++||||++..                    
T Consensus        37 Vkv~a~gi~~~D~~~~~g~-----~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~--------------------   91 (346)
T 3fbg_A           37 VKIQSISVNPVDTKQRLMD-----VSKAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSG--------------------   91 (346)
T ss_dssp             EEEEEEEECHHHHHHTTSC-----CSSSCBCCCCCEEEEEEEECTTCCSCCTTCEEEECC--------------------
T ss_pred             EEEEEEEcCHHHHHHHhCC-----CCCCCcCcCCccEEEEEEeCCCCCcCCCCCEEEEcC--------------------
Confidence            6899999999999998874     346899999999999999999999999999998642                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH-hcCCC------CCCeEEEEC-CCHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR-RANVG------PETNVMIMG-SGPIGLV  151 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~-~~~~~------~~~~vlI~G-~g~vG~~  151 (319)
                           ....+|+|+||+.++++.++++|+++++++||+++ ...|||+++. .++++      +|++|||+| +|++|++
T Consensus        92 -----~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~  166 (346)
T 3fbg_A           92 -----SPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSI  166 (346)
T ss_dssp             -----CTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHH
T ss_pred             -----CCCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHH
Confidence                 12347999999999999999999999999999886 5678999985 58888      999999995 8999999


Q ss_pred             HHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhc
Q 020928          152 TLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       152 ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  231 (319)
                      ++|+|+..|+ +|+++++++++.++++++|++.++++..   ++.+.++++   .+.++|++|||+|++..++.++++|+
T Consensus       167 a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~~~~---~~~g~Dvv~d~~g~~~~~~~~~~~l~  239 (346)
T 3fbg_A          167 ATQIAKAYGL-RVITTASRNETIEWTKKMGADIVLNHKE---SLLNQFKTQ---GIELVDYVFCTFNTDMYYDDMIQLVK  239 (346)
T ss_dssp             HHHHHHHTTC-EEEEECCSHHHHHHHHHHTCSEEECTTS---CHHHHHHHH---TCCCEEEEEESSCHHHHHHHHHHHEE
T ss_pred             HHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEECCc---cHHHHHHHh---CCCCccEEEECCCchHHHHHHHHHhc
Confidence            9999999999 8999999999999999999999988642   555555554   46789999999998767899999999


Q ss_pred             CCCEEEEecccCCcccccchHHHhcCcEEEEeecc-------------CCCHHHHHHHHHcCCCCCCCceeeee---cCC
Q 020928          232 PGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-------------RSTWPLCIEFLRSGKIDVKPLITHRF---GFT  295 (319)
Q Consensus       232 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~  295 (319)
                      ++|+++.++...  ..++...+..+++++.+...+             .+.++++++++++|++  ++.+.++|   ++ 
T Consensus       240 ~~G~iv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~~~~l-  314 (346)
T 3fbg_A          240 PRGHIATIVAFE--NDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIY--QPTTTKVIEGLTT-  314 (346)
T ss_dssp             EEEEEEESSCCS--SCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSS--CCCEEEEEESCCH-
T ss_pred             cCCEEEEECCCC--CCCccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCE--ECCccceecCCCH-
Confidence            999999887532  344555677788999886543             1337789999999998  56677776   66 


Q ss_pred             hhhHHHHHHHHhcCCCceEEEEeC
Q 020928          296 QKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       296 ~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                       +++++|++.+++++..||+|+++
T Consensus       315 -~~~~~A~~~~~~g~~~GKvvl~~  337 (346)
T 3fbg_A          315 -ENIYQAHQILESNTMIGKLVINL  337 (346)
T ss_dssp             -HHHHHHHHHHHTTCCCSEEEEEC
T ss_pred             -HHHHHHHHHHhcCCcceEEEEec
Confidence             99999999999999999999974

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=2.7e-45  Score=324.85  Aligned_cols=276  Identities=20%  Similarity=0.293  Sum_probs=232.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|...  ...++|.++|||++|+|+++|++++ |++||||++..                    
T Consensus        53 Vkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V~~vG~~v~-~~vGDrV~~~~--------------------  109 (342)
T 4eye_A           53 VDVKAAGVCFPDYLMTKGEYQ--LKMEPPFVPGIETAGVVRSAPEGSG-IKPGDRVMAFN--------------------  109 (342)
T ss_dssp             EEEEEEECCHHHHHHHTTCSS--SCCCSSBCCCSEEEEEEEECCTTSS-CCTTCEEEEEC--------------------
T ss_pred             EEEEEEecCHHHHHHhcCCCC--CCCCCCCccceeEEEEEEEECCCCC-CCCCCEEEEec--------------------
Confidence            689999999999999988542  2347899999999999999999999 99999999742                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHH-HhcCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHAC-RRANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                              ..|+|+||+.++++.++++|+++++++||.+ .++.|||+++ +.+++++|++|||+|+ |++|++++|+|+
T Consensus       110 --------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~  181 (342)
T 4eye_A          110 --------FIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAK  181 (342)
T ss_dssp             --------SSCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHH
T ss_pred             --------CCCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence                    3699999999999999999999999999766 5899999999 5689999999999996 999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++++++++.++++++|++.++++.   +++.+.+.+++  .+.++|++|||+|++ .+..++++++++|+++
T Consensus       182 ~~Ga-~Vi~~~~~~~~~~~~~~~ga~~v~~~~---~~~~~~v~~~~--~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv  254 (342)
T 4eye_A          182 GMGA-KVIAVVNRTAATEFVKSVGADIVLPLE---EGWAKAVREAT--GGAGVDMVVDPIGGP-AFDDAVRTLASEGRLL  254 (342)
T ss_dssp             HTTC-EEEEEESSGGGHHHHHHHTCSEEEESS---TTHHHHHHHHT--TTSCEEEEEESCC---CHHHHHHTEEEEEEEE
T ss_pred             HcCC-EEEEEeCCHHHHHHHHhcCCcEEecCc---hhHHHHHHHHh--CCCCceEEEECCchh-HHHHHHHhhcCCCEEE
Confidence            9999 899999999999999999999998864   46666666654  355899999999986 7889999999999999


Q ss_pred             EecccCCc-ccccchHHHhcCcEEEEeecc----------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          238 LIGLAKTE-MTVALTPAAAREVDVIGIFRY----------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       238 ~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      .+|..... ..++...+..+++++.++...          .+.++++++++++| +  .+.++++|++  +++++|++.+
T Consensus       255 ~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l--~~~i~~~~~l--~~~~~A~~~~  329 (342)
T 4eye_A          255 VVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG-M--RPPVSARIPL--SEGRQALQDF  329 (342)
T ss_dssp             EC----------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT-C--CCCEEEEEEG--GGHHHHHHHH
T ss_pred             EEEccCCCCCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC-C--CCCcceEEeH--HHHHHHHHHH
Confidence            99865432 345555677899999998643          13478899999999 5  7788899999  9999999999


Q ss_pred             hcCCCceEEEEeC
Q 020928          307 AQGGNAIKVMFNL  319 (319)
Q Consensus       307 ~~~~~~gkvvi~~  319 (319)
                      .+++..||+|++.
T Consensus       330 ~~~~~~gKvvl~P  342 (342)
T 4eye_A          330 ADGKVYGKMVLVP  342 (342)
T ss_dssp             HTTCCCSEEEEEC
T ss_pred             HhCCCCceEEEeC
Confidence            9999999999863

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=1.6e-45  Score=323.71  Aligned_cols=276  Identities=17%  Similarity=0.241  Sum_probs=229.9

Q ss_pred             CCcceEeeccCCcccccccc--ccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMR--CANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC   78 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~--~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~   78 (319)
                      |||+++|||++|+++++|..  .......+|.++|||++|+|+++|++|++|++||||++.+..                
T Consensus        38 Vkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~~~----------------  101 (321)
T 3tqh_A           38 IKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGF----------------  101 (321)
T ss_dssp             EEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECST----------------
T ss_pred             EEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEccCC----------------
Confidence            68999999999999998731  111245789999999999999999999999999999975321                


Q ss_pred             CCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEEC-CCHHHHHHHHHH
Q 020928           79 PEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAA  156 (319)
Q Consensus        79 ~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G-~g~vG~~ai~la  156 (319)
                              ....|+|+||+.++++.++++|+++++++||+++ .+.|||++++.+++++|++|||+| +|++|++++|+|
T Consensus       102 --------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a  173 (321)
T 3tqh_A          102 --------PDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLA  173 (321)
T ss_dssp             --------TTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHH
T ss_pred             --------CCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence                    1347999999999999999999999999999886 567999999889999999999997 799999999999


Q ss_pred             HHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcc-hhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCE
Q 020928          157 RAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIED-VDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK  235 (319)
Q Consensus       157 ~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~  235 (319)
                      +.+|+ +|+++. ++++.++++++|+++++++...  + +.+.        -.++|++|||+|++ ....++++++++|+
T Consensus       174 ~~~Ga-~vi~~~-~~~~~~~~~~lGa~~~i~~~~~--~~~~~~--------~~g~D~v~d~~g~~-~~~~~~~~l~~~G~  240 (321)
T 3tqh_A          174 KQKGT-TVITTA-SKRNHAFLKALGAEQCINYHEE--DFLLAI--------STPVDAVIDLVGGD-VGIQSIDCLKETGC  240 (321)
T ss_dssp             HHTTC-EEEEEE-CHHHHHHHHHHTCSEEEETTTS--CHHHHC--------CSCEEEEEESSCHH-HHHHHGGGEEEEEE
T ss_pred             HHcCC-EEEEEe-ccchHHHHHHcCCCEEEeCCCc--chhhhh--------ccCCCEEEECCCcH-HHHHHHHhccCCCE
Confidence            99999 677775 5667899999999999886432  3 2221        15799999999987 55899999999999


Q ss_pred             EEEecccCCcccccchHHHhcCcEEEEeecc--CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCCCce
Q 020928          236 VCLIGLAKTEMTVALTPAAAREVDVIGIFRY--RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGGNAI  313 (319)
Q Consensus       236 ~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g  313 (319)
                      ++.++......  .......+++++.++...  .+.++++++++++|++  ++.++++|++  +++++|++.+++++..|
T Consensus       241 iv~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l--~~~~~A~~~~~~~~~~g  314 (321)
T 3tqh_A          241 IVSVPTITAGR--VIEVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDKL--RIEISRIFQL--SEAVTAHELLETGHVRG  314 (321)
T ss_dssp             EEECCSTTHHH--HHHHHHHTTCEEECCCCCCCHHHHHHHHHHHHTTSS--CCCEEEEECG--GGHHHHHHHHHTTCCCS
T ss_pred             EEEeCCCCchh--hhhhhhhcceEEEEEecCCCHHHHHHHHHHHHCCCc--ccccccEEcH--HHHHHHHHHHHcCCCCc
Confidence            99997543221  223456788898885433  4568999999999999  4568899999  99999999999999999


Q ss_pred             EEEEeC
Q 020928          314 KVMFNL  319 (319)
Q Consensus       314 kvvi~~  319 (319)
                      |+|+++
T Consensus       315 Kvvl~~  320 (321)
T 3tqh_A          315 KLVFKV  320 (321)
T ss_dssp             EEEEEC
T ss_pred             eEEEEe
Confidence            999975

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=1.7e-44  Score=322.09  Aligned_cols=279  Identities=18%  Similarity=0.233  Sum_probs=234.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|...   ...+|.++|||++|+|+++|++|++|++||||++..                    
T Consensus        57 Vkv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~--------------------  113 (363)
T 4dvj_A           57 VEVKAVSVNPVDYKVRRSTPP---DGTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAG--------------------  113 (363)
T ss_dssp             EEEEEEECCHHHHHHHHHCCC-----CCSBCCCCCEEEEEEEECTTCCSCCTTCEEEECC--------------------
T ss_pred             EEEEEEEeCHHHHHHHcCCCC---CCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEcc--------------------
Confidence            689999999999999988642   146899999999999999999999999999998642                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCC-----CCCeEEEEC-CCHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVG-----PETNVMIMG-SGPIGLVT  152 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~-----~~~~vlI~G-~g~vG~~a  152 (319)
                           .....|+|+||+.++++.++++|+++++++||+++ .+.|||+++ +.++++     +|++|||+| +|++|+++
T Consensus       114 -----~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a  188 (363)
T 4dvj_A          114 -----SIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIA  188 (363)
T ss_dssp             -----CTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHH
T ss_pred             -----CCCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHH
Confidence                 12347999999999999999999999999999886 567999998 458888     899999998 79999999


Q ss_pred             HHHHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhc
Q 020928          153 LLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       153 i~la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  231 (319)
                      +|+|+.+ |+ +|+++++++++.++++++|++.++++..   ++.+.+.++   .+.++|+||||+|++..++.++++|+
T Consensus       189 ~qlak~~~g~-~Vi~~~~~~~~~~~~~~lGad~vi~~~~---~~~~~v~~~---~~~g~Dvvid~~g~~~~~~~~~~~l~  261 (363)
T 4dvj_A          189 VQIARQRTDL-TVIATASRPETQEWVKSLGAHHVIDHSK---PLAAEVAAL---GLGAPAFVFSTTHTDKHAAEIADLIA  261 (363)
T ss_dssp             HHHHHHHCCS-EEEEECSSHHHHHHHHHTTCSEEECTTS---CHHHHHHTT---CSCCEEEEEECSCHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---CHHHHHHHh---cCCCceEEEECCCchhhHHHHHHHhc
Confidence            9999984 76 8999999999999999999999988642   555555544   46789999999998778899999999


Q ss_pred             CCCEEEEecccCCcccccchHHHhcCcEEEEeecc-------------CCCHHHHHHHHHcCCCCCCCceeeee-cCChh
Q 020928          232 PGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-------------RSTWPLCIEFLRSGKIDVKPLITHRF-GFTQK  297 (319)
Q Consensus       232 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~  297 (319)
                      ++|+++.++..   ..++...+..+++++.++..+             .+.++++++++++|++  ++.+.+++ .++++
T Consensus       262 ~~G~iv~~g~~---~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~~~~l~  336 (363)
T 4dvj_A          262 PQGRFCLIDDP---SAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRL--RTTLTNRLSPINAA  336 (363)
T ss_dssp             TTCEEEECSCC---SSCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSS--CCCEEEEECSCSHH
T ss_pred             CCCEEEEECCC---CccchHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCe--eccccceecCCCHH
Confidence            99999999642   345566677889999886543             1246789999999999  45666666 23339


Q ss_pred             hHHHHHHHHhcCCCceEEEEeC
Q 020928          298 EIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       298 ~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++++|++.+++++..||+|+++
T Consensus       337 ~~~~A~~~~~~~~~~GKvVl~~  358 (363)
T 4dvj_A          337 NLKQAHALVESGTARGKVVIEG  358 (363)
T ss_dssp             HHHHHHHHHHHTCCCSEEEEEC
T ss_pred             HHHHHHHHHHhCCCceEEEEeC
Confidence            9999999999999999999974

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=1.6e-44  Score=317.87  Aligned_cols=279  Identities=27%  Similarity=0.284  Sum_probs=235.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|....   .++|.++|||++|+|+++|++|++|++||||+...                    
T Consensus        33 Vkv~a~gi~~~D~~~~~g~~~~---~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~--------------------   89 (325)
T 3jyn_A           33 VRNKAIGLNFIDTYYRSGLYPA---PFLPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGT--------------------   89 (325)
T ss_dssp             EEEEEEECCHHHHHHHHTSSCC---SSSSBCCCCCEEEEEEEECTTCCSCCTTCEEEESS--------------------
T ss_pred             EEEEEEecCHHHHHHHCCCCCC---CCCCCCCCceeEEEEEEECCCCCCCCCCCEEEEec--------------------
Confidence            6899999999999999875422   36799999999999999999999999999998631                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                             ...|+|+||+.++++.++++|+++++++||.++ ...++|+++.+ +++++|++|||+| +|++|++++|+|+
T Consensus        90 -------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~  162 (325)
T 3jyn_A           90 -------GPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAK  162 (325)
T ss_dssp             -------SSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHH
T ss_pred             -------CCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence                   247999999999999999999999999999775 67889999865 8999999999998 7999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++++++++.++++++|++.++++.  ..++.+.+.+++  .+.++|++||++|++ .+..++++++++|+++
T Consensus       163 ~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~--~~~~~~~~~~~~--~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv  236 (325)
T 3jyn_A          163 ALGA-KLIGTVSSPEKAAHAKALGAWETIDYS--HEDVAKRVLELT--DGKKCPVVYDGVGQD-TWLTSLDSVAPRGLVV  236 (325)
T ss_dssp             HHTC-EEEEEESSHHHHHHHHHHTCSEEEETT--TSCHHHHHHHHT--TTCCEEEEEESSCGG-GHHHHHTTEEEEEEEE
T ss_pred             HCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC--CccHHHHHHHHh--CCCCceEEEECCChH-HHHHHHHHhcCCCEEE
Confidence            9999 799999999999999999999998864  346666666654  356899999999985 8899999999999999


Q ss_pred             EecccCCcc-cccchHHHhc-CcEEEEeecc-----CCC----HHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          238 LIGLAKTEM-TVALTPAAAR-EVDVIGIFRY-----RST----WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       238 ~~g~~~~~~-~~~~~~~~~~-~~~i~~~~~~-----~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      .+|...... .++...+..+ .+.+.+....     .+.    ++++++++++|++++.  ++++|++  +++++|++.+
T Consensus       237 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l--~~~~~A~~~~  312 (325)
T 3jyn_A          237 SFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVD--GIEQYAL--KDAAKAQIEL  312 (325)
T ss_dssp             ECCCTTCCCCSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCC--CCEEEEG--GGHHHHHHHH
T ss_pred             EEecCCCCCCCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCc--cccEEcH--HHHHHHHHHH
Confidence            999755432 4555666666 5666543321     223    3578999999999554  6788999  9999999999


Q ss_pred             hcCCCceEEEEeC
Q 020928          307 AQGGNAIKVMFNL  319 (319)
Q Consensus       307 ~~~~~~gkvvi~~  319 (319)
                      ++++..||+|++.
T Consensus       313 ~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          313 SARRTTGSTILIP  325 (325)
T ss_dssp             HTTCCCSCEEEEC
T ss_pred             HcCCCCceEEEeC
Confidence            9999999999863

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.3e-44  Score=319.09  Aligned_cols=278  Identities=22%  Similarity=0.298  Sum_probs=234.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|.... ...++|.++|||++|+|+++|++|++|++||||++...           +       
T Consensus        37 Vkv~a~gi~~~D~~~~~g~~~~-~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~-----------g-------   97 (343)
T 3gaz_A           37 VQIEASGTNPLDAKIRAGEAPH-AQQPLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTG-----------G-------   97 (343)
T ss_dssp             EEEEEEECCHHHHHHHTTCCGG-GCCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECC-----------S-------
T ss_pred             EEEEEEEeCHhhHHHhCCCCCC-CCCCCCcccCcceEEEEEEECCCCCCCCCCCEEEEEeC-----------C-------
Confidence            6899999999999999875422 12568999999999999999999999999999986321           1       


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                           ....+|+|+||+.++++.++++|+++++++||+++ .+.|||+++ +++++++|++|||+| +|++|++++|+|+
T Consensus        98 -----~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~  172 (343)
T 3gaz_A           98 -----VGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIAL  172 (343)
T ss_dssp             -----STTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHH
T ss_pred             -----CCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence                 11247999999999999999999999999999886 567999999 679999999999998 6999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++ .+++++++++++|++. ++   ..+++.+.+.+++  .+.++|++|||+|++ .+..++++|+++|+++
T Consensus       173 ~~Ga-~Vi~~-~~~~~~~~~~~lGa~~-i~---~~~~~~~~~~~~~--~~~g~D~vid~~g~~-~~~~~~~~l~~~G~iv  243 (343)
T 3gaz_A          173 ARGA-RVFAT-ARGSDLEYVRDLGATP-ID---ASREPEDYAAEHT--AGQGFDLVYDTLGGP-VLDASFSAVKRFGHVV  243 (343)
T ss_dssp             HTTC-EEEEE-ECHHHHHHHHHHTSEE-EE---TTSCHHHHHHHHH--TTSCEEEEEESSCTH-HHHHHHHHEEEEEEEE
T ss_pred             HCCC-EEEEE-eCHHHHHHHHHcCCCE-ec---cCCCHHHHHHHHh--cCCCceEEEECCCcH-HHHHHHHHHhcCCeEE
Confidence            9999 78888 8899999999999988 55   3346666666554  356899999999975 8899999999999999


Q ss_pred             EecccCCcccccchHHHhcCcEEEEeecc------------CCCHHHHHHHHHcCCCCCCCcee-eeecCChhhHHHHHH
Q 020928          238 LIGLAKTEMTVALTPAAAREVDVIGIFRY------------RSTWPLCIEFLRSGKIDVKPLIT-HRFGFTQKEIEDAFE  304 (319)
Q Consensus       238 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~a~~  304 (319)
                      .++...   .++...+.++++++.+++..            .+.++++++++++|++  ++.++ ++|++  +++++|++
T Consensus       244 ~~g~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~~l--~~~~~A~~  316 (343)
T 3gaz_A          244 SCLGWG---THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKL--APRLDPRTFSI--AEIGSAYD  316 (343)
T ss_dssp             ESCCCS---CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCC--CCCBCSCCEET--TCHHHHHH
T ss_pred             EEcccC---ccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCc--ccCccCcEecH--HHHHHHHH
Confidence            998654   34556778899999987653            2457889999999999  45666 68999  99999999


Q ss_pred             HHhcCCC----ceEEEEe
Q 020928          305 ISAQGGN----AIKVMFN  318 (319)
Q Consensus       305 ~~~~~~~----~gkvvi~  318 (319)
                      .+++++.    .||++++
T Consensus       317 ~~~~~~~~Gr~~GK~v~~  334 (343)
T 3gaz_A          317 AVLGRNDVPRQRGKIAIT  334 (343)
T ss_dssp             HHHTCTTCCCCSSBCEEE
T ss_pred             HHHcCCCcccccceEEEE
Confidence            9998854    6788876

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=3.1e-44  Score=318.01  Aligned_cols=279  Identities=17%  Similarity=0.206  Sum_probs=230.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|....  ..++|.++|||++|+|+++|++|++|++||||++.                     
T Consensus        37 Vkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~---------------------   93 (340)
T 3gms_A           37 VRMLVRPINPSDLIPITGAYAH--RIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLPL---------------------   93 (340)
T ss_dssp             EEEEEEECCHHHHGGGGTTTTT--TSCSSBCCCSCCEEEEEEECTTSCGGGTTCEEEEC---------------------
T ss_pred             EEEEEecCCHHHHHHhcCCCCC--CCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEec---------------------
Confidence            6899999999999999885422  24789999999999999999999999999999863                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                             ...|+|+||+.++++.++++|+++++++||+++ ...+||+++ +.+++++|++|||+|+ |++|++++|+|+
T Consensus        94 -------~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~  166 (340)
T 3gms_A           94 -------RGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQ  166 (340)
T ss_dssp             -------SSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHH
T ss_pred             -------CCCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHH
Confidence                   237999999999999999999999999999875 678889888 5599999999999986 699999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++++++++.++++++|++.++++.  ..++.+.+.+++  .+.++|++|||+|++ .....+++|+++|+++
T Consensus       167 ~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~--~~~~~~~~~~~~--~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv  240 (340)
T 3gms_A          167 ILNF-RLIAVTRNNKHTEELLRLGAAYVIDTS--TAPLYETVMELT--NGIGADAAIDSIGGP-DGNELAFSLRPNGHFL  240 (340)
T ss_dssp             HHTC-EEEEEESSSTTHHHHHHHTCSEEEETT--TSCHHHHHHHHT--TTSCEEEEEESSCHH-HHHHHHHTEEEEEEEE
T ss_pred             HcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCC--cccHHHHHHHHh--CCCCCcEEEECCCCh-hHHHHHHHhcCCCEEE
Confidence            9999 799999999999999999999998754  346666666654  356899999999987 5566779999999999


Q ss_pred             EecccCCcccccchHHH-hcCcEEEEeecc-----------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHH
Q 020928          238 LIGLAKTEMTVALTPAA-AREVDVIGIFRY-----------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI  305 (319)
Q Consensus       238 ~~g~~~~~~~~~~~~~~-~~~~~i~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~  305 (319)
                      .+|..... .+....+. ...+.+..+...           .+.++++++++++|++++.+ ++++|++  +++++|++.
T Consensus       241 ~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~~l--~~~~~A~~~  316 (340)
T 3gms_A          241 TIGLLSGI-QVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTYEL--ADVKAAVDV  316 (340)
T ss_dssp             ECCCTTSC-CCCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEEEEEG--GGHHHHHHH
T ss_pred             EEeecCCC-CCCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccEEEeH--HHHHHHHHH
Confidence            99965432 22222222 244555443211           34688999999999997654 6789999  999999999


Q ss_pred             HhcCCC-ceEEEEeC
Q 020928          306 SAQGGN-AIKVMFNL  319 (319)
Q Consensus       306 ~~~~~~-~gkvvi~~  319 (319)
                      +++++. .||+++++
T Consensus       317 ~~~~~~~~GKvvl~~  331 (340)
T 3gms_A          317 VQSAEKTKGKVFLTS  331 (340)
T ss_dssp             HHCTTCCSSEEEEEC
T ss_pred             HHhcCCCCCeEEEEE
Confidence            999974 49999974

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=7.3e-44  Score=318.99  Aligned_cols=283  Identities=18%  Similarity=0.265  Sum_probs=226.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++++.+.      ..+|.++|||++|+|+++|++|++|++||||++.       |..|..+.      
T Consensus        41 Vkv~a~gi~~~D~~~~~g~------~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~-------~~~~~~~~------  101 (371)
T 3gqv_A           41 VRVEAVAINPSDTSMRGQF------ATPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGA-------QNEMCPRT------  101 (371)
T ss_dssp             EEEEEEECCGGGGC-----------CCTTSCCCSEEEEEEEEECTTCCSCCTTCEEEEE-------CCTTCTTC------
T ss_pred             EEEEEEEcCHHHHHHhhcC------CCCCccCccccEEEEEEeCCCCCCCCCCCEEEEe-------ccCCCCCC------
Confidence            6899999999999998762      2469999999999999999999999999999864       34443332      


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-Hh-cCC-----------CCCCeEEEECC-
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RR-ANV-----------GPETNVMIMGS-  145 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~-~~~-----------~~~~~vlI~G~-  145 (319)
                             ...|+|+||+.++++.++++|+++++++||+++ .+.|||+++ +. .++           ++|++|||+|+ 
T Consensus       102 -------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~  174 (371)
T 3gqv_A          102 -------PDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGS  174 (371)
T ss_dssp             -------TTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTT
T ss_pred             -------CCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCC
Confidence                   347999999999999999999999999999886 567899998 44 443           89999999996 


Q ss_pred             CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHH
Q 020928          146 GPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMST  225 (319)
Q Consensus       146 g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~  225 (319)
                      |++|++++|+|+.+|+ +|+++. +++++++++++|+++++++..  +++.+.+++++   ++++|++|||+|++..+..
T Consensus       175 G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~vi~~~~--~~~~~~v~~~t---~g~~d~v~d~~g~~~~~~~  247 (371)
T 3gqv_A          175 TATATVTMQMLRLSGY-IPIATC-SPHNFDLAKSRGAEEVFDYRA--PNLAQTIRTYT---KNNLRYALDCITNVESTTF  247 (371)
T ss_dssp             SHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS--TTHHHHHHHHT---TTCCCEEEESSCSHHHHHH
T ss_pred             cHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHHcCCcEEEECCC--chHHHHHHHHc---cCCccEEEECCCchHHHHH
Confidence            9999999999999999 677775 789999999999999998643  46666666664   3469999999999878999


Q ss_pred             HHHhh-cCCCEEEEecccCC------ccccc---chHHHhcCcEEEEeecc----------CCCHHHHHHHHHcCCCCCC
Q 020928          226 ALNAT-RPGGKVCLIGLAKT------EMTVA---LTPAAAREVDVIGIFRY----------RSTWPLCIEFLRSGKIDVK  285 (319)
Q Consensus       226 ~~~~l-~~~G~~v~~g~~~~------~~~~~---~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~g~~~~~  285 (319)
                      ++++| +++|+++.+|....      .....   ...+..+++++.+++..          .+.++++++++++|++++.
T Consensus       248 ~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~  327 (371)
T 3gqv_A          248 CFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHH  327 (371)
T ss_dssp             HHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHhhcCCCEEEEEecCccccccccccceeeeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence            99999 59999999985332      11111   12355678887776433          1123478899999999888


Q ss_pred             CceeeeecCChhhHHHHHHHHhcCCCce-EEEEe
Q 020928          286 PLITHRFGFTQKEIEDAFEISAQGGNAI-KVMFN  318 (319)
Q Consensus       286 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g-kvvi~  318 (319)
                      +..++.|++  +++++|++.+++++..| |+|++
T Consensus       328 ~~~~~~~~l--~~~~~A~~~l~~g~~~Gkkvvv~  359 (371)
T 3gqv_A          328 PLRVVQGGF--DHIKQGMELVRKGELSGEKLVVR  359 (371)
T ss_dssp             CEEEEEECH--HHHHHHHHHHHTTCCSSCEEEEE
T ss_pred             cCeecCCcH--HHHHHHHHHHHcCCCceEEEEEE
Confidence            887777888  99999999999998887 55554

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-44  Score=320.13  Aligned_cols=276  Identities=22%  Similarity=0.315  Sum_probs=225.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|...  ...++|.++|||++|+|+++|++|++|++||||++..                    
T Consensus        35 Vkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~--------------------   92 (349)
T 4a27_A           35 IRVKACGLNFIDLMVRQGNID--NPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFV--------------------   92 (349)
T ss_dssp             EEEEEEEECHHHHHHHHTCSS--SCCCSSBCCCSEEEEEEEEECTTCCSCCTTCEEEEEC--------------------
T ss_pred             EEEEEEecCHHHHHHhCCCcC--CCCCCCccccceeEEEEEEeCCCCCCCCCCCEEEEec--------------------
Confidence            689999999999999988632  2347899999999999999999999999999999742                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH-hcCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR-RANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~-~~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                              ..|+|+||+.++++.++++|+++++++||+++ ++.|||+++. .+++++|++|||+|+ |++|++++|+|+
T Consensus        93 --------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~  164 (349)
T 4a27_A           93 --------NYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCS  164 (349)
T ss_dssp             --------SSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHT
T ss_pred             --------CCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence                    36999999999999999999999999999886 7889999984 589999999999996 999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|..+|++++ ++++.+.++ +|++++++   ...++.+.++++.   +.++|++|||+|++ .+..++++|+++|+++
T Consensus       165 ~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~---~~~~~~~~~~~~~---~~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v  235 (349)
T 4a27_A          165 TVPNVTVFGTA-STFKHEAIK-DSVTHLFD---RNADYVQEVKRIS---AEGVDIVLDCLCGD-NTGKGLSLLKPLGTYI  235 (349)
T ss_dssp             TSTTCEEEEEE-CGGGHHHHG-GGSSEEEE---TTSCHHHHHHHHC---TTCEEEEEEECC--------CTTEEEEEEEE
T ss_pred             HcCCcEEEEeC-CHHHHHHHH-cCCcEEEc---CCccHHHHHHHhc---CCCceEEEECCCch-hHHHHHHHhhcCCEEE
Confidence            99755777776 667888888 99999887   3346666666653   56899999999987 5688999999999999


Q ss_pred             EecccCCc-----------------ccccchHHHhcCcEEEEeecc------------CCCHHHHHHHHHcCCCCCCCce
Q 020928          238 LIGLAKTE-----------------MTVALTPAAAREVDVIGIFRY------------RSTWPLCIEFLRSGKIDVKPLI  288 (319)
Q Consensus       238 ~~g~~~~~-----------------~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~  288 (319)
                      .+|.....                 ..+....++.++..+.++...            .+.++++++++++|++  ++.+
T Consensus       236 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i  313 (349)
T 4a27_A          236 LYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKI--KPVV  313 (349)
T ss_dssp             EEC-------------------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSC--CCCE
T ss_pred             EECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCc--cccc
Confidence            99864211                 113344567788888887642            3457889999999999  6778


Q ss_pred             eeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          289 THRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       289 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +++|++  +++++|++.+++++..||+|+++
T Consensus       314 ~~~~~l--~~~~~A~~~l~~~~~~GKvvi~~  342 (349)
T 4a27_A          314 DSLWAL--EEVKEAMQRIHDRGNIGKLILDV  342 (349)
T ss_dssp             EEEECG--GGHHHHHHHHHTTCCSSEEEEET
T ss_pred             cceECH--HHHHHHHHHHHhCCCCceEEEec
Confidence            899999  99999999999999999999974

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-43  Score=314.00  Aligned_cols=279  Identities=22%  Similarity=0.321  Sum_probs=232.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++++.|...  ....+|.++|||++|+|+++|++|++|++||||++.+                    
T Consensus        62 Vkv~a~gi~~~D~~~~~G~~~--~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~--------------------  119 (351)
T 1yb5_A           62 IKVHACGVNPVETYIRSGTYS--RKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSS--------------------  119 (351)
T ss_dssp             EEEEEEECCHHHHHHHHTCSS--CCCCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESC--------------------
T ss_pred             EEEEEEecCHHHHHHhCCCCC--CCCCCCCcCCceeEEEEEEECCCCCCCCCCCEEEEeC--------------------
Confidence            689999999999999887431  1235799999999999999999999999999998742                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH-hcCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR-RANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~-~~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                             ...|+|+||+.++++.++++|+++++++||+++ ++.|||+++. .++++++++|||+|+ |++|++++|+|+
T Consensus       120 -------~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~  192 (351)
T 1yb5_A          120 -------TISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIAR  192 (351)
T ss_dssp             -------CSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHH
T ss_pred             -------CCCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHH
Confidence                   136999999999999999999999999999885 8899999996 589999999999995 999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++++++++.++++++|++.++++..  +++.+.+.+..  .+.++|++||++|++ .+..++++++++|+++
T Consensus       193 ~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~--~~~~~~~~~~~--~~~~~D~vi~~~G~~-~~~~~~~~l~~~G~iv  266 (351)
T 1yb5_A          193 AYGL-KILGTAGTEEGQKIVLQNGAHEVFNHRE--VNYIDKIKKYV--GEKGIDIIIEMLANV-NLSKDLSLLSHGGRVI  266 (351)
T ss_dssp             HTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--TTHHHHHHHHH--CTTCEEEEEESCHHH-HHHHHHHHEEEEEEEE
T ss_pred             HCCC-EEEEEeCChhHHHHHHHcCCCEEEeCCC--chHHHHHHHHc--CCCCcEEEEECCChH-HHHHHHHhccCCCEEE
Confidence            9999 7999999999999999999998887643  45555555543  245899999999976 7888999999999999


Q ss_pred             EecccCCcccccchHHHhcCcEEEEeecc---CCC----HHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHH-HhcC
Q 020928          238 LIGLAKTEMTVALTPAAAREVDVIGIFRY---RST----WPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEI-SAQG  309 (319)
Q Consensus       238 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~  309 (319)
                      .+|... ...++...+..+++++.++...   .+.    ++.+.+++.+|++  .+.++++|++  +++++|++. ++++
T Consensus       267 ~~g~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~~~~g~l--~~~i~~~~~l--~~~~~A~~~~~~~~  341 (351)
T 1yb5_A          267 VVGSRG-TIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWL--KPVIGSQYPL--EKVAEAHENIIHGS  341 (351)
T ss_dssp             ECCCCS-CEEECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHHHHHHHHTCC--CCCEEEEEEG--GGHHHHHHHHHHSS
T ss_pred             EEecCC-CCccCHHHHHhCCcEEEEEEeecCCHHHHHHHHHHHHHHHHCCCc--cCccceEEcH--HHHHHHHHHHHHhC
Confidence            999643 3345556677899999998532   122    3445667788887  6778899999  999999998 6666


Q ss_pred             CCceEEEEeC
Q 020928          310 GNAIKVMFNL  319 (319)
Q Consensus       310 ~~~gkvvi~~  319 (319)
                      ...||+|+++
T Consensus       342 ~~~gKvvi~~  351 (351)
T 1yb5_A          342 GATGKMILLL  351 (351)
T ss_dssp             CCSSEEEEEC
T ss_pred             CCCeEEEEeC
Confidence            7789999974

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=3.2e-44  Score=319.97  Aligned_cols=281  Identities=16%  Similarity=0.210  Sum_probs=225.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++.++|...  ....+|.++|||++|+|+++|++|++|++||||++.+                    
T Consensus        59 Vkv~a~gi~~~D~~~~~G~~~--~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~--------------------  116 (357)
T 1zsy_A           59 VKMLAAPINPSDINMIQGNYG--LLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPAN--------------------  116 (357)
T ss_dssp             EEEEEEECCHHHHHHHHTCSS--CCCCSSEECCSCCEEEEEEECTTCCSCCTTCEEEESS--------------------
T ss_pred             EEEEECCCCHHHhhHhcCCCC--CCCCCCccccceEEEEEEEeCCCCCCCCCCCEEEEcC--------------------
Confidence            689999999999999987432  1225799999999999999999999999999998742                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                             ...|+|+||+.++++.++++|+++++++||+++ ...|||+++.+ +++++|++|||+|+ |++|++++|+||
T Consensus       117 -------~~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak  189 (357)
T 1zsy_A          117 -------AGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA  189 (357)
T ss_dssp             -------SCSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH
T ss_pred             -------CCCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH
Confidence                   136999999999999999999999999999886 67899999955 89999999999995 999999999999


Q ss_pred             HcCCCeEEEecCCh---hHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCC
Q 020928          158 AFGAPRIIITDVDV---QRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGG  234 (319)
Q Consensus       158 ~~g~~~vv~v~~~~---~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  234 (319)
                      .+|+++|+++++.+   ++.++++++|++.++++..   .....+.++... ..++|+||||+|++ ....++++++++|
T Consensus       190 ~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~~~~~~~-~~~~Dvvid~~g~~-~~~~~~~~l~~~G  264 (357)
T 1zsy_A          190 ALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEE---LRRPEMKNFFKD-MPQPRLALNCVGGK-SSTELLRQLARGG  264 (357)
T ss_dssp             HHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHH---HHSGGGGGTTSS-SCCCSEEEESSCHH-HHHHHHTTSCTTC
T ss_pred             HcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCc---chHHHHHHHHhC-CCCceEEEECCCcH-HHHHHHHhhCCCC
Confidence            99995444444433   3578899999999887531   111223333221 12699999999987 4567899999999


Q ss_pred             EEEEeccc-CCcccccchHHHhcCcEEEEeecc-----------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHH
Q 020928          235 KVCLIGLA-KTEMTVALTPAAAREVDVIGIFRY-----------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDA  302 (319)
Q Consensus       235 ~~v~~g~~-~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a  302 (319)
                      +++.+|.. .....++...+..+++++.+++..           .+.++++++++++|++++  .+.++|++  +++++|
T Consensus       265 ~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~~~~~~~l--~~~~~A  340 (357)
T 1zsy_A          265 TMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTA--PACSQVPL--QDYQSA  340 (357)
T ss_dssp             EEEECCCCTTCCBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCC--CCEEEEEG--GGHHHH
T ss_pred             EEEEEecCCCCCCCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcC--ccceEEcH--HHHHHH
Confidence            99999853 333445556677899999997642           234678999999999954  34588999  999999


Q ss_pred             HHHHhcCCCceEEEEeC
Q 020928          303 FEISAQGGNAIKVMFNL  319 (319)
Q Consensus       303 ~~~~~~~~~~gkvvi~~  319 (319)
                      ++.+.++...||+|+++
T Consensus       341 ~~~~~~~~~~gKvvl~~  357 (357)
T 1zsy_A          341 LEASMKPFISSKQILTM  357 (357)
T ss_dssp             HHHHTSSSCSSEEEEEC
T ss_pred             HHHHHhCCCCCcEEEeC
Confidence            99999888889999975

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=3.3e-44  Score=320.91  Aligned_cols=286  Identities=15%  Similarity=0.158  Sum_probs=231.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCC---------cccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCcccc
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKP---------MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCK   71 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p---------~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~   71 (319)
                      |||.++|||++|+++++|....  ...+|         .++|||++|+|+++|++|++|++||||++.+           
T Consensus        38 Vkv~a~gi~~~D~~~~~g~~~~--~~~~P~~~~~~~p~~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~-----------  104 (364)
T 1gu7_A           38 VKTLGSPVNPSDINQIQGVYPS--KPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSH-----------  104 (364)
T ss_dssp             EEEEEEEECHHHHHHHHTCSSC--CCCCBSTTCCSSCBEECCSCCEEEEEEECTTCCSCCTTCEEEESS-----------
T ss_pred             EEEEeccCCHHHHHHhcCCCCC--CCCCCccccccCcccccCceeEEEEEEeCCCCCcCCCCCEEEecC-----------
Confidence            6899999999999999875321  12456         8999999999999999999999999999742           


Q ss_pred             CCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCC-----------CCChhhhhccc-hhHHHHHHHHh-cCCCCC-
Q 020928           72 AGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD-----------NVSLEEGAMCE-PLSVGVHACRR-ANVGPE-  137 (319)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~-----------~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~-  137 (319)
                                      ...|+|+||+.++++.++++|+           ++++++||+++ ++.|||+++++ +++++| 
T Consensus       105 ----------------~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  168 (364)
T 1gu7_A          105 ----------------VNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGK  168 (364)
T ss_dssp             ----------------SCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTT
T ss_pred             ----------------CCCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCC
Confidence                            1369999999999999999998           89999999886 68899999987 689999 


Q ss_pred             CeEEEECC-CHHHHHHHHHHHHcCCCeEEEecCChh----HHHHHHHcCCCEeeccCCC-CcchhHHHHHhhhhcCCCcc
Q 020928          138 TNVMIMGS-GPIGLVTLLAARAFGAPRIIITDVDVQ----RLSIARNLGADETAKVSTD-IEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       138 ~~vlI~G~-g~vG~~ai~la~~~g~~~vv~v~~~~~----~~~~~~~~g~~~v~~~~~~-~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++|||+|+ |++|++++|+|+.+|+ +++++.++++    +.++++++|+++++++... .+++.+.+.+++...+.++|
T Consensus       169 ~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~D  247 (364)
T 1gu7_A          169 DWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAK  247 (364)
T ss_dssp             CEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEE
T ss_pred             cEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCce
Confidence            99999985 9999999999999999 5666655443    3677899999999886421 13555666655411256899


Q ss_pred             EEEEccCChHHHHHHHHhhcCCCEEEEecccCC-cccccchHHHhcCcEEEEeecc----------CCCHHHHHHHHHcC
Q 020928          212 VSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY----------RSTWPLCIEFLRSG  280 (319)
Q Consensus       212 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~g  280 (319)
                      +||||+|++. ...++++++++|+++.+|.... ...++...+..+++++.++...          .+.++++++++++|
T Consensus       248 vvid~~G~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g  326 (364)
T 1gu7_A          248 LALNCVGGKS-STGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEG  326 (364)
T ss_dssp             EEEESSCHHH-HHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCchh-HHHHHHHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcC
Confidence            9999999874 4488999999999999986432 3345556677899999987643          24578899999999


Q ss_pred             CCCCCCceeeeecC-ChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          281 KIDVKPLITHRFGF-TQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       281 ~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++++.+.  .++++ +++++++|++.+.++...||+|+++
T Consensus       327 ~l~~~~~--~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          327 KLTDAKS--IETLYDGTKPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             CCCCCCC--EEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             Ccccccc--eEEecCchhhHHHHHHHHHhCCCCceEEEeC
Confidence            9976554  45566 2379999999999888889999975

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=7.4e-46  Score=325.15  Aligned_cols=268  Identities=18%  Similarity=0.233  Sum_probs=211.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|...   ..++|.++|||++|+|+++|++|++|++||||++.+.                   
T Consensus        34 Vkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~-------------------   91 (315)
T 3goh_A           34 VQNQAIGINPVDWKFIKANPI---NWSNGHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTS-------------------   91 (315)
T ss_dssp             EEEEEEEECHHHHHHHHHCTT---CCCTTCCCCSEEEEEEEEECTTSCGGGTTCEEEEECC-------------------
T ss_pred             EEEEEEecCHHHHHHHcCCCC---cCCCCCEeeeeeEEEEEEeCCCCCCCCCCCEEEEeCC-------------------
Confidence            689999999999999988542   2478999999999999999999999999999997531                   


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHc
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAF  159 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~  159 (319)
                            ...+|+|+||+.++++.++++|+++++++||++ .++.|||++++.+++++|++|||+|+|++|++++|+|+.+
T Consensus        92 ------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~  165 (315)
T 3goh_A           92 ------LKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNA  165 (315)
T ss_dssp             ------TTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHHHH
T ss_pred             ------CCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHc
Confidence                  234799999999999999999999999999866 5899999999779999999999999999999999999999


Q ss_pred             CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          160 GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       160 g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      |+ +|++++ ++++.++++++|++++++      + .+.   +    +.++|++|||+|++ ....++++|+++|+++.+
T Consensus       166 Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~------d-~~~---v----~~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          166 GY-VVDLVS-ASLSQALAAKRGVRHLYR------E-PSQ---V----TQKYFAIFDAVNSQ-NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             TC-EEEEEC-SSCCHHHHHHHTEEEEES------S-GGG---C----CSCEEEEECC--------TTGGGEEEEEEEEEE
T ss_pred             CC-EEEEEE-ChhhHHHHHHcCCCEEEc------C-HHH---h----CCCccEEEECCCch-hHHHHHHHhcCCCEEEEE
Confidence            99 888888 899999999999998873      1 111   2    57899999999987 558889999999999999


Q ss_pred             cccCCccccc--chHHHhcCcEEEEeecc---------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhc
Q 020928          240 GLAKTEMTVA--LTPAAAREVDVIGIFRY---------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ  308 (319)
Q Consensus       240 g~~~~~~~~~--~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~  308 (319)
                      +.........  ...+.++++.+.+++..         .+.++++++++++|++  ++.++++|++  +++++|++.++ 
T Consensus       229 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l--~~~~~A~~~~~-  303 (315)
T 3goh_A          229 QDRIPAPIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKM--EIAAPDIFRF--EQMIEALDHSE-  303 (315)
T ss_dssp             CCC----------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSS--CCCCCEEEEG--GGHHHHHHHHH-
T ss_pred             eCCCCccccchhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHHCCCc--ccccceEecH--HHHHHHHHHHH-
Confidence            7543221111  11122222222222221         1236789999999998  5677899999  99999999998 


Q ss_pred             CCCceEEEEeC
Q 020928          309 GGNAIKVMFNL  319 (319)
Q Consensus       309 ~~~~gkvvi~~  319 (319)
                       ...||+|+++
T Consensus       304 -~~~gKvvi~~  313 (315)
T 3goh_A          304 -QTKLKTVLTL  313 (315)
T ss_dssp             -HHCCCEEEES
T ss_pred             -hcCCcEEEEe
Confidence             5778999975

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=1.4e-43  Score=315.32  Aligned_cols=281  Identities=19%  Similarity=0.269  Sum_probs=233.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCC-CCCCCCCEEEEccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEV-KSLEVGDRVALEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v-~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|+++++|....  ...+|.++|||++|+|+++|++| ++|++||||++..                   
T Consensus        54 Vkv~a~gi~~~D~~~~~G~~~~--~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~-------------------  112 (354)
T 2j8z_A           54 LKVAASALNRADLMQRQGQYDP--PPGASNILGLEASGHVAELGPGCQGHWKIGDTAMALL-------------------  112 (354)
T ss_dssp             EEEEEEECCHHHHHHHHTSSCC--CTTSCSSSCSEEEEEEEEECSCC--CCCTTCEEEEEC-------------------
T ss_pred             EEEEEeecCHHHHHHhCCCCCC--CCCCCcccceeeEEEEEEECCCcCCCCCCCCEEEEec-------------------
Confidence            6899999999999998875321  23579999999999999999999 9999999998741                   


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEEC-CCHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAA  156 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G-~g~vG~~ai~la  156 (319)
                               ..|+|+||+.++++.++++|+++++++||+++ ++.|||+++ +.++++++++|||+| +|++|++++|+|
T Consensus       113 ---------~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a  183 (354)
T 2j8z_A          113 ---------PGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLT  183 (354)
T ss_dssp             ---------SSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHH
T ss_pred             ---------CCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHH
Confidence                     35999999999999999999999999998774 889999999 568999999999998 699999999999


Q ss_pred             HHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEE
Q 020928          157 RAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV  236 (319)
Q Consensus       157 ~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~  236 (319)
                      +..|+ +|+++++++++.+.++++|++.++++..  .++.+.+.++.  .+.++|++|||+|++ .+..++++|+++|++
T Consensus       184 ~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~--~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~i  257 (354)
T 2j8z_A          184 RMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKK--EDFSEATLKFT--KGAGVNLILDCIGGS-YWEKNVNCLALDGRW  257 (354)
T ss_dssp             HHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHT--TTSCEEEEEESSCGG-GHHHHHHHEEEEEEE
T ss_pred             HHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC--hHHHHHHHHHh--cCCCceEEEECCCch-HHHHHHHhccCCCEE
Confidence            99999 7899999999999999999998887643  45555555543  245799999999987 788899999999999


Q ss_pred             EEecccCC-cccccc-hHHHhcCcEEEEeeccCC-----------CHHHHHHHHHcC-CCCCCCceeeeecCChhhHHHH
Q 020928          237 CLIGLAKT-EMTVAL-TPAAAREVDVIGIFRYRS-----------TWPLCIEFLRSG-KIDVKPLITHRFGFTQKEIEDA  302 (319)
Q Consensus       237 v~~g~~~~-~~~~~~-~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~a  302 (319)
                      +.+|.... ...++. ..+..+++++.++.....           .++++++++++| ++.+.+.++++|++  +++++|
T Consensus       258 v~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l--~~~~~A  335 (354)
T 2j8z_A          258 VLYGLMGGGDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPV--TEIQEA  335 (354)
T ss_dssp             EECCCTTCSCCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEG--GGHHHH
T ss_pred             EEEeccCCCccCCChhHHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcH--HHHHHH
Confidence            99996543 234555 567789999999865421           123577888889 33347888899999  999999


Q ss_pred             HHHHhcCCCceEEEEeC
Q 020928          303 FEISAQGGNAIKVMFNL  319 (319)
Q Consensus       303 ~~~~~~~~~~gkvvi~~  319 (319)
                      ++.+++++..||+|+++
T Consensus       336 ~~~~~~~~~~gKvvv~~  352 (354)
T 2j8z_A          336 HKYMEANKNIGKIVLEL  352 (354)
T ss_dssp             HHHHHTTCCSSEEEEEC
T ss_pred             HHHHHhCCCCceEEEec
Confidence            99999888889999974

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=9e-45  Score=322.60  Aligned_cols=280  Identities=16%  Similarity=0.135  Sum_probs=231.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCC-CCCCCCCEEEEccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEV-KSLEVGDRVALEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v-~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||+++|||++|+++++|...  ...++|.++|||++|+|+++|++| ++|++||||++..                   
T Consensus        54 Vkv~a~gi~~~D~~~~~G~~~--~~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~-------------------  112 (349)
T 3pi7_A           54 IKVNLASINPSDVAFIKGQYG--QPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFAT-------------------  112 (349)
T ss_dssp             EEEEEEECCHHHHHHHTTCSS--SCBCTTSBCCSEEEEEEEEECSSHHHHHHTTCEEEEEC-------------------
T ss_pred             EEEEEecCCHHHHHHhcccCC--CCCCCCCCccceEEEEEEEECCCccCCCCCCCEEEEec-------------------
Confidence            689999999999999987532  234689999999999999999999 9999999999752                   


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCC-CeEEEE-CCCHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPE-TNVMIM-GSGPIGLVTLLAA  156 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~-~~vlI~-G~g~vG~~ai~la  156 (319)
                            ....+|+|+||+.++++.++++|+++++++||.++ ...|||+++++++ +++ +++||+ |+|++|++++|+|
T Consensus       113 ------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~-~~g~~~vli~gg~g~vG~~a~qla  185 (349)
T 3pi7_A          113 ------GLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVK-QEGEKAFVMTAGASQLCKLIIGLA  185 (349)
T ss_dssp             ------TTSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHHHHHH-HHCCSEEEESSTTSHHHHHHHHHH
T ss_pred             ------cCCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHHHHHh-hCCCCEEEEeCCCcHHHHHHHHHH
Confidence                  12357999999999999999999999999999775 6677887777776 666 688888 4799999999999


Q ss_pred             HHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEE
Q 020928          157 RAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKV  236 (319)
Q Consensus       157 ~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~  236 (319)
                      +..|+ +|++++++++++++++++|++.++++.  .+++.+.+.+++.  +.++|++|||+|++ ....++++|+++|++
T Consensus       186 ~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~--~~~~~~~v~~~~~--~~g~D~vid~~g~~-~~~~~~~~l~~~G~i  259 (349)
T 3pi7_A          186 KEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEK--APDFEATLREVMK--AEQPRIFLDAVTGP-LASAIFNAMPKRARW  259 (349)
T ss_dssp             HHHTC-EEEEEESCGGGHHHHHHHTCSEEEETT--STTHHHHHHHHHH--HHCCCEEEESSCHH-HHHHHHHHSCTTCEE
T ss_pred             HHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECC--cHHHHHHHHHHhc--CCCCcEEEECCCCh-hHHHHHhhhcCCCEE
Confidence            99999 899999999999999999999998864  3567777766653  45899999999987 668899999999999


Q ss_pred             EEeccc-CCcccccc-hHHHhcCcEEEEeecc----------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHH
Q 020928          237 CLIGLA-KTEMTVAL-TPAAAREVDVIGIFRY----------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFE  304 (319)
Q Consensus       237 v~~g~~-~~~~~~~~-~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~  304 (319)
                      +.+|.. .....++. ..+..+++++.+++..          .+.++++++++++|++  ++.++++|++  +++++|++
T Consensus       260 v~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l--~~~~~A~~  335 (349)
T 3pi7_A          260 IIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRW--STDVTAVVPL--AEAIAWVP  335 (349)
T ss_dssp             EECCCSCCSCCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSC--CC-CCEEEEH--HHHHHHHH
T ss_pred             EEEeccCCCCCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCc--ccccceEEcH--HHHHHHHH
Confidence            999953 33445566 7788899999998753          2457778889999998  5677889999  99999999


Q ss_pred             HHhcCCCceEEEEeC
Q 020928          305 ISAQGGNAIKVMFNL  319 (319)
Q Consensus       305 ~~~~~~~~gkvvi~~  319 (319)
                      .+. +...||+|+++
T Consensus       336 ~~~-~~~~gKvvl~p  349 (349)
T 3pi7_A          336 AEL-TKPNGKVFIRP  349 (349)
T ss_dssp             HHH-TSSSSCEEEEC
T ss_pred             HHh-CCCCceEEEeC
Confidence            554 45779999974

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=2.8e-43  Score=311.12  Aligned_cols=282  Identities=22%  Similarity=0.320  Sum_probs=231.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|.........+|.++|||++|+|+++|++|++|++||||+..+                    
T Consensus        33 Vkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~--------------------   92 (333)
T 1wly_A           33 LRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTDFTVGERVCTCL--------------------   92 (333)
T ss_dssp             EEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCSCCTTCEEEECS--------------------
T ss_pred             EEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCCCCCCCEEEEec--------------------
Confidence            689999999999999887420111135799999999999999999999999999997631                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhh--hhcc-chhHHHHHHHH-hcCCCCCCeEEEEC-CCHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEE--GAMC-EPLSVGVHACR-RANVGPETNVMIMG-SGPIGLVTLLA  155 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~--aa~~-~~~~~a~~~l~-~~~~~~~~~vlI~G-~g~vG~~ai~l  155 (319)
                             ...|+|+||+.++++.++++|+++++++  ||++ .++.|||+++. .++++++++|||+| +|++|++++|+
T Consensus        93 -------~~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~  165 (333)
T 1wly_A           93 -------PPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPW  165 (333)
T ss_dssp             -------SSCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHH
T ss_pred             -------CCCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHH
Confidence                   0269999999999999999999999999  7766 48899999996 58999999999998 59999999999


Q ss_pred             HHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCE
Q 020928          156 ARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK  235 (319)
Q Consensus       156 a~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~  235 (319)
                      ++..|+ +|+++++++++.+.++++|++.++++..  .++.+.+.+...  +.++|++||++|+. .++.++++++++|+
T Consensus       166 a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~i~~~~~--~~~~d~vi~~~g~~-~~~~~~~~l~~~G~  239 (333)
T 1wly_A          166 ARHLGA-TVIGTVSTEEKAETARKLGCHHTINYST--QDFAEVVREITG--GKGVDVVYDSIGKD-TLQKSLDCLRPRGM  239 (333)
T ss_dssp             HHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHHHHHHHHT--TCCEEEEEECSCTT-THHHHHHTEEEEEE
T ss_pred             HHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC--HHHHHHHHHHhC--CCCCeEEEECCcHH-HHHHHHHhhccCCE
Confidence            999999 7999999999999999999998887643  455555555442  45799999999984 88999999999999


Q ss_pred             EEEecccCC-cccccch-HHHhcC--cEEEEeecc--------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHH
Q 020928          236 VCLIGLAKT-EMTVALT-PAAARE--VDVIGIFRY--------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAF  303 (319)
Q Consensus       236 ~v~~g~~~~-~~~~~~~-~~~~~~--~~i~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~  303 (319)
                      ++.+|.... ...++.. .++.++  +++.+++..        .+.++++++++++|++  ++.++++|++  +++++|+
T Consensus       240 iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l--~~~~~A~  315 (333)
T 1wly_A          240 CAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVL--HSSVAKTFPL--REAAAAH  315 (333)
T ss_dssp             EEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSC--CCCEEEEEEG--GGHHHHH
T ss_pred             EEEEecCCCCcCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCc--CCCcceEEeH--HHHHHHH
Confidence            999996542 2344444 566788  888886431        1257889999999998  5678899999  9999999


Q ss_pred             HHHhcCCCceEEEEeC
Q 020928          304 EISAQGGNAIKVMFNL  319 (319)
Q Consensus       304 ~~~~~~~~~gkvvi~~  319 (319)
                      +.+++++..||+|+++
T Consensus       316 ~~~~~~~~~gKvvi~~  331 (333)
T 1wly_A          316 KYMGGRQTIGSIVLLP  331 (333)
T ss_dssp             HHHHHCSCCSEEEEET
T ss_pred             HHHHcCCCceEEEEEe
Confidence            9999988889999874

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=3.8e-44  Score=315.64  Aligned_cols=278  Identities=15%  Similarity=0.180  Sum_probs=230.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|...  ...++|.++|||++|+|+++|  +++|++||||++.+   |      .         
T Consensus        32 Vkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V~~~G--v~~~~vGdrV~~~~---~------~---------   89 (324)
T 3nx4_A           32 VDVHWSSLNYKDALAITGKGK--IIRHFPMIPGIDFAGTVHASE--DPRFHAGQEVLLTG---W------G---------   89 (324)
T ss_dssp             EEEEEEEECHHHHHHHHTCTT--CCCSSSBCCCSEEEEEEEEES--STTCCTTCEEEEEC---T------T---------
T ss_pred             EEEEEEeCCHHHHhhhcCCCC--CCCCCCccccceeEEEEEEeC--CCCCCCCCEEEEcc---c------c---------
Confidence            689999999999999988542  234789999999999999998  68899999999752   1      0         


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH---hcCCCCCC-eEEEECC-CHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR---RANVGPET-NVMIMGS-GPIGLVTLL  154 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~---~~~~~~~~-~vlI~G~-g~vG~~ai~  154 (319)
                         + ....+|+|+||+.++++.++++|+++++++||+++ .+.|||++++   +.++++++ +|||+|+ |++|++++|
T Consensus        90 ---~-g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiq  165 (324)
T 3nx4_A           90 ---V-GENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVA  165 (324)
T ss_dssp             ---B-TTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHH
T ss_pred             ---c-CCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHH
Confidence               0 12357999999999999999999999999999886 5678888773   46677743 4999995 999999999


Q ss_pred             HHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCC
Q 020928          155 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGG  234 (319)
Q Consensus       155 la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  234 (319)
                      +|+.+|+ +|+++++++++.++++++|+++++++....  .   ++++   .+.++|++||++|++ .++.++++++++|
T Consensus       166 la~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~--~---~~~~---~~~~~d~v~d~~g~~-~~~~~~~~l~~~G  235 (324)
T 3nx4_A          166 LLHKLGY-QVAAVSGRESTHGYLKSLGANRILSRDEFA--E---SRPL---EKQLWAGAIDTVGDK-VLAKVLAQMNYGG  235 (324)
T ss_dssp             HHHHTTC-CEEEEESCGGGHHHHHHHTCSEEEEGGGSS--C---CCSS---CCCCEEEEEESSCHH-HHHHHHHTEEEEE
T ss_pred             HHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecCCHH--H---HHhh---cCCCccEEEECCCcH-HHHHHHHHHhcCC
Confidence            9999999 799999999999999999999999864321  1   2222   246899999999986 8999999999999


Q ss_pred             EEEEecccCC-cccccchHHHhcCcEEEEeecc-------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          235 KVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY-------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       235 ~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      +++.+|.... ..+++...+..+++++.++...       .+.++++++++++|+++  +. +++|++  +++++|++.+
T Consensus       236 ~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~-~~~~~l--~~~~~A~~~~  310 (324)
T 3nx4_A          236 CVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFYA--QA-ATEITL--ADAPKFADAI  310 (324)
T ss_dssp             EEEECCCTTCSEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHH--HH-EEEEEG--GGHHHHHHHH
T ss_pred             EEEEEecCCCCCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCCCC--CC-ceeEeH--HHHHHHHHHH
Confidence            9999997544 3456667788899999998643       23477888999999884  45 788999  9999999999


Q ss_pred             hcCCCceEEEEeC
Q 020928          307 AQGGNAIKVMFNL  319 (319)
Q Consensus       307 ~~~~~~gkvvi~~  319 (319)
                      ++++..||+|+++
T Consensus       311 ~~~~~~gkvvv~~  323 (324)
T 3nx4_A          311 INNQVQGRTLVKI  323 (324)
T ss_dssp             HTTCCCSEEEEEC
T ss_pred             HhCCCCceEEEec
Confidence            9999999999975

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.6e-43  Score=308.02  Aligned_cols=279  Identities=21%  Similarity=0.239  Sum_probs=232.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++++.|...   ...+|.++|||++|+|+++|++|++|++||||...                     
T Consensus        33 Vkv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~---------------------   88 (327)
T 1qor_A           33 VENKAIGINFIDTYIRSGLYP---PPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYA---------------------   88 (327)
T ss_dssp             EEEEEEECCHHHHHHHHTSSC---CSSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEES---------------------
T ss_pred             EEEEEEecCHHHHHHhCCCCC---CCCCCCCCCceeEEEEEEECCCCCCCCCCCEEEEC---------------------
Confidence            689999999999999987431   23579999999999999999999999999999421                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHH-hcCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACR-RANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                            ...+|+|+||+.++++.++++|+++++++||++ .++.|||+++. .++++++++|||+| +|++|++++|+++
T Consensus        89 ------g~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~  162 (327)
T 1qor_A           89 ------QSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAK  162 (327)
T ss_dssp             ------CCSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHH
T ss_pred             ------CCCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence                  012599999999999999999999999999766 58899999997 68999999999998 6999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++++++++.+.++++|++.++++.  ++++.+.+.+..  .+.++|++||++|. ..++.++++++++|+++
T Consensus       163 ~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~--~~~~~D~vi~~~g~-~~~~~~~~~l~~~G~iv  236 (327)
T 1qor_A          163 ALGA-KLIGTVGTAQKAQSALKAGAWQVINYR--EEDLVERLKEIT--GGKKVRVVYDSVGR-DTWERSLDCLQRRGLMV  236 (327)
T ss_dssp             HHTC-EEEEEESSHHHHHHHHHHTCSEEEETT--TSCHHHHHHHHT--TTCCEEEEEECSCG-GGHHHHHHTEEEEEEEE
T ss_pred             HcCC-EEEEEeCCHHHHHHHHHcCCCEEEECC--CccHHHHHHHHh--CCCCceEEEECCch-HHHHHHHHHhcCCCEEE
Confidence            9999 799999999999999999999888754  345555555443  24579999999994 58899999999999999


Q ss_pred             EecccCCc-ccccchHHHhc-CcEEEEeec---------cCCCHHHHHHHHHcCCCCCCCcee--eeecCChhhHHHHHH
Q 020928          238 LIGLAKTE-MTVALTPAAAR-EVDVIGIFR---------YRSTWPLCIEFLRSGKIDVKPLIT--HRFGFTQKEIEDAFE  304 (319)
Q Consensus       238 ~~g~~~~~-~~~~~~~~~~~-~~~i~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~a~~  304 (319)
                      .+|..... ..++...+..+ ++.+.+...         ..+.++++++++++|+++  +.++  ++|++  +++++|++
T Consensus       237 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~~~l--~~~~~A~~  312 (327)
T 1qor_A          237 SFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIK--VDVAEQQKYPL--KDAQRAHE  312 (327)
T ss_dssp             ECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSC--CCCCGGGEEEG--GGHHHHHH
T ss_pred             EEecCCCCCCccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCcc--cccccCcEEcH--HHHHHHHH
Confidence            99965432 34555666677 787775432         123478899999999994  4566  78999  99999999


Q ss_pred             HHhcCCCceEEEEeC
Q 020928          305 ISAQGGNAIKVMFNL  319 (319)
Q Consensus       305 ~~~~~~~~gkvvi~~  319 (319)
                      .+++++..||+++++
T Consensus       313 ~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          313 ILESRATQGSSLLIP  327 (327)
T ss_dssp             HHHTTCCCBCCEEEC
T ss_pred             HHHhCCCCceEEEeC
Confidence            999988899999874

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=1.8e-42  Score=308.91  Aligned_cols=277  Identities=21%  Similarity=0.262  Sum_probs=228.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCC-CCCCCCEEEEccCccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVK-SLEVGDRVALEPGISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~-~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|+++++|....  ..++|+++|||++|+|+++|++|+ +|++||||++.                    
T Consensus        58 Vkv~a~gi~~~D~~~~~G~~~~--~~~~P~i~G~E~~G~V~~vG~~V~~~~~vGdrV~~~--------------------  115 (362)
T 2c0c_A           58 VRNRFVGVNASDINYSAGRYDP--SVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYM--------------------  115 (362)
T ss_dssp             EEEEEEECCTTHHHHHTTTTCT--TCCSCEECCSEEEEEEEEECTTGGGTCCTTCEEEEE--------------------
T ss_pred             EEEEEeccCHHHHHHhcCCCCC--CCCCCCCCCceeEEEEEEECCCccCCCCCCCEEEEc--------------------
Confidence            6899999999999999875321  246799999999999999999999 99999999864                    


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHH-hcCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACR-RANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~-~~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                               ..|+|+||+.++++.++++|+. +++.|++..++.|||+++. .+++++|++|||+| +|++|++++|+|+
T Consensus       116 ---------~~G~~aey~~v~~~~~~~~P~~-~~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~  185 (362)
T 2c0c_A          116 ---------APGSFAEYTVVPASIATPVPSV-KPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSK  185 (362)
T ss_dssp             ---------CSCCSBSEEEEEGGGCEECSSS-CHHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHH
T ss_pred             ---------cCCcceeEEEEcHHHeEECCCC-chHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHH
Confidence                     2599999999999999999996 4555555568899999995 48999999999998 6999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++++++++.++++++|++.++++..  +++.+.++++   .+.++|++|||+|+. .++.++++++++|+++
T Consensus       186 ~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~~~~~---~~~g~D~vid~~g~~-~~~~~~~~l~~~G~iv  258 (362)
T 2c0c_A          186 KAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKT--EPVGTVLKQE---YPEGVDVVYESVGGA-MFDLAVDALATKGRLI  258 (362)
T ss_dssp             HTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT--SCHHHHHHHH---CTTCEEEEEECSCTH-HHHHHHHHEEEEEEEE
T ss_pred             hCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC--hhHHHHHHHh---cCCCCCEEEECCCHH-HHHHHHHHHhcCCEEE
Confidence            9999 7999999999999999999999887643  4555555444   346899999999985 8899999999999999


Q ss_pred             EecccCCcc-----------cccchHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCCCCCc------eeeeecC
Q 020928          238 LIGLAKTEM-----------TVALTPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKIDVKPL------ITHRFGF  294 (319)
Q Consensus       238 ~~g~~~~~~-----------~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~~~~~------~~~~~~~  294 (319)
                      .+|......           .+ ...++.+++++.++...      .+.++++++++++|++++...      ..+.+++
T Consensus       259 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l  337 (362)
T 2c0c_A          259 VIGFISGYQTPTGLSPVKAGTL-PAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGL  337 (362)
T ss_dssp             ECCCGGGTTSSSCCCCCCCTTH-HHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBST
T ss_pred             EEeCCCCcCccccccccccccc-HHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCH
Confidence            998643211           11 24567789999987643      235788999999999964432      2345678


Q ss_pred             ChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          295 TQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       295 ~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                        +++++|++.+++++..||+|+++
T Consensus       338 --~~~~~A~~~~~~~~~~gKvvv~~  360 (362)
T 2c0c_A          338 --ESIFRAVNYMYMGKNTGKIVVEL  360 (362)
T ss_dssp             --THHHHHHHHHHTTCCSBEEEEEC
T ss_pred             --HHHHHHHHHHHcCCCCceEEEEc
Confidence              99999999999888889999974

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=2.6e-42  Score=309.55  Aligned_cols=281  Identities=20%  Similarity=0.247  Sum_probs=223.8

Q ss_pred             CCcceEeeccCCcccccccccc------------ccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCc
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCA------------NFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCS   68 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~------------~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~   68 (319)
                      |||.++|||++|+++++|....            ....++|.++|||++|+|+++|++|++|++||||++.+.       
T Consensus        55 Vkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~-------  127 (375)
T 2vn8_A           55 VKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP-------  127 (375)
T ss_dssp             EEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECC-------
T ss_pred             EEEEEEEcCHHHHHHhccCccccccccccccccccccccCCcccceeeeEEEEEeCCCCCCCCCCCEEEEecC-------
Confidence            6899999999999999874211            111247999999999999999999999999999997531       


Q ss_pred             cccCCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH-hcC----CCCCCeEEE
Q 020928           69 LCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR-RAN----VGPETNVMI  142 (319)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~-~~~----~~~~~~vlI  142 (319)
                                        ....|+|+||+.++++.++++|+++++++||+++ .+.|||+++. .++    +++|++|||
T Consensus       128 ------------------~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV  189 (375)
T 2vn8_A          128 ------------------PWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLI  189 (375)
T ss_dssp             ------------------TTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEE
T ss_pred             ------------------CCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEE
Confidence                              1236999999999999999999999999999886 5789999995 588    999999999


Q ss_pred             EC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCCh-
Q 020928          143 MG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD-  220 (319)
Q Consensus       143 ~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~-  220 (319)
                      +| +|++|++++|+|+..|+ +|++++ ++++.++++++|++.++++..  +++.+.+.+     ..++|++|||+|++ 
T Consensus       190 ~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~~~~--~~~~~~~~~-----~~g~D~vid~~g~~~  260 (375)
T 2vn8_A          190 LGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRKLGADDVIDYKS--GSVEEQLKS-----LKPFDFILDNVGGST  260 (375)
T ss_dssp             ETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS--SCHHHHHHT-----SCCBSEEEESSCTTH
T ss_pred             ECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHHcCCCEEEECCc--hHHHHHHhh-----cCCCCEEEECCCChh
Confidence            98 69999999999999999 677776 678899999999999988643  344444432     25799999999987 


Q ss_pred             HHHHHHHHhhcCCCEEEEecccCCcc-c---ccc------hHHHh-------cCcEEEEeecc--CCCHHHHHHHHHcCC
Q 020928          221 KTMSTALNATRPGGKVCLIGLAKTEM-T---VAL------TPAAA-------REVDVIGIFRY--RSTWPLCIEFLRSGK  281 (319)
Q Consensus       221 ~~~~~~~~~l~~~G~~v~~g~~~~~~-~---~~~------~~~~~-------~~~~i~~~~~~--~~~~~~~~~~~~~g~  281 (319)
                      ..+..++++++++|+++.+|...... .   +..      ..+..       ++..+.+....  .+.++++++++++|+
T Consensus       261 ~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~  340 (375)
T 2vn8_A          261 ETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGK  340 (375)
T ss_dssp             HHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred             hhhHHHHHhhcCCcEEEEeCCCcccccccccccchhheeehhhccccccccccCcceEEEEeCCCHHHHHHHHHHHHCCC
Confidence            45578888999999999998643210 0   000      01111       45555443322  235789999999999


Q ss_pred             CCCCCceeeeecCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          282 IDVKPLITHRFGFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +  ++.++++|++  +++++|++.+++++..||+|+++
T Consensus       341 l--~~~i~~~~~l--~~~~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          341 I--RPVIEQTFPF--SKVPEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             C--CCCEEEEEEG--GGHHHHHHHHHHCCCSSEEEEEC
T ss_pred             c--ccCcCeEECH--HHHHHHHHHHHcCCCCCeEEEEe
Confidence            8  5778889999  99999999999988889999974

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1e-41  Score=301.51  Aligned_cols=271  Identities=17%  Similarity=0.170  Sum_probs=227.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccc----eeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHE----CAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYN   76 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e----~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~   76 (319)
                      |||+++|||++|++.+.+..    ...+|.++|||    ++|+|++.  ++++|++||||++                  
T Consensus        43 Vkv~a~gi~~~d~~~~~~~~----~~~~p~~~G~e~g~~~~G~V~~~--~v~~~~vGdrV~~------------------   98 (336)
T 4b7c_A           43 VKNEYLSLDPAMRGWMNDAR----SYIPPVGIGEVMRALGVGKVLVS--KHPGFQAGDYVNG------------------   98 (336)
T ss_dssp             EEEEEEECCTHHHHHHSCSC----CSSCCCCTTSBCCCEEEEEEEEE--CSTTCCTTCEEEE------------------
T ss_pred             EEEEEEEeCHHHHhhhhccc----ccCCCCCCCcccCCceEEEEEec--CCCCCCCCCEEec------------------
Confidence            68999999999998887632    22457777777    89999994  5899999999985                  


Q ss_pred             CCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhh--hcc-chhHHHHHHH-HhcCCCCCCeEEEECC-CHHHHH
Q 020928           77 LCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEG--AMC-EPLSVGVHAC-RRANVGPETNVMIMGS-GPIGLV  151 (319)
Q Consensus        77 ~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~a--a~~-~~~~~a~~~l-~~~~~~~~~~vlI~G~-g~vG~~  151 (319)
                                   .|+|+||+.++++.++++|+++++.++  +.+ .++.|||+++ +.++++++++|||+|+ |++|++
T Consensus        99 -------------~G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~  165 (336)
T 4b7c_A           99 -------------ALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSV  165 (336)
T ss_dssp             -------------ECCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHH
T ss_pred             -------------cCCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHH
Confidence                         489999999999999999999977765  444 5889999999 6699999999999996 999999


Q ss_pred             HHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhh
Q 020928          152 TLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT  230 (319)
Q Consensus       152 ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l  230 (319)
                      ++|+|+..|+ +|+++++++++.+.+ +++|++.++++..  +++.+.+.++.   +.++|++||++|++ .+..+++++
T Consensus       166 ~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~---~~~~d~vi~~~g~~-~~~~~~~~l  238 (336)
T 4b7c_A          166 AGQIARLKGC-RVVGIAGGAEKCRFLVEELGFDGAIDYKN--EDLAAGLKREC---PKGIDVFFDNVGGE-ILDTVLTRI  238 (336)
T ss_dssp             HHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCSEEEETTT--SCHHHHHHHHC---TTCEEEEEESSCHH-HHHHHHTTE
T ss_pred             HHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCEEEECCC--HHHHHHHHHhc---CCCceEEEECCCcc-hHHHHHHHH
Confidence            9999999999 899999999999999 8999999887643  46666666554   56899999999975 889999999


Q ss_pred             cCCCEEEEecccCC-------cccccchHHHhcCcEEEEeeccC------CCHHHHHHHHHcCCCCCCCceeeeecCChh
Q 020928          231 RPGGKVCLIGLAKT-------EMTVALTPAAAREVDVIGIFRYR------STWPLCIEFLRSGKIDVKPLITHRFGFTQK  297 (319)
Q Consensus       231 ~~~G~~v~~g~~~~-------~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  297 (319)
                      +++|+++.+|....       ...++...+..+++++.++....      +.++++++++++|++++.  ...++++  +
T Consensus       239 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l--~  314 (336)
T 4b7c_A          239 AFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSR--EDIVEGL--E  314 (336)
T ss_dssp             EEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCC--EEEEECG--G
T ss_pred             hhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccc--eeeecCH--H
Confidence            99999999986431       12445566788999999987652      567889999999999544  4555788  9


Q ss_pred             hHHHHHHHHhcCCCceEEEEeC
Q 020928          298 EIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       298 ~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++++|++.+++++..||+|+++
T Consensus       315 ~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          315 TFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             GHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHHcCCCCceEEEeC
Confidence            9999999999999999999985

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=2.4e-42  Score=304.77  Aligned_cols=281  Identities=19%  Similarity=0.284  Sum_probs=223.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|..  .....+|.++|||++|+|+++  ++++|++||||++....                  
T Consensus        36 Vkv~a~gi~~~D~~~~~g~~--~~~~~~p~i~G~E~~G~V~~~--~v~~~~vGdrV~~~~~~------------------   93 (330)
T 1tt7_A           36 IKVAYSGINYKDGLAGKAGG--NIVREYPLILGIDAAGTVVSS--NDPRFAEGDEVIATSYE------------------   93 (330)
T ss_dssp             EEECCEEECHHHHHHTSTTC--TTCSSCSEECCSEEEEEEEEC--SSTTCCTTCEEEEESTT------------------
T ss_pred             EEEEEEecCHHHHhhhcCCC--CCcCCCCccccceEEEEEEEc--CCCCCCCCCEEEEcccc------------------
Confidence            68999999999999998743  122467999999999999996  46889999999874210                  


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH---HhcCCCCCC-eEEEECC-CHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC---RRANVGPET-NVMIMGS-GPIGLVTLL  154 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l---~~~~~~~~~-~vlI~G~-g~vG~~ai~  154 (319)
                         + +....|+|+||+.++++.++++|+++++++||+++ .+.|||.++   ++.++++++ +|||+|+ |++|++++|
T Consensus        94 ---~-g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q  169 (330)
T 1tt7_A           94 ---L-GVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVS  169 (330)
T ss_dssp             ---B-TTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHH
T ss_pred             ---c-CCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHH
Confidence               0 11247999999999999999999999999999886 466777765   457899996 9999995 999999999


Q ss_pred             HHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCC
Q 020928          155 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGG  234 (319)
Q Consensus       155 la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  234 (319)
                      +|+..|+ +|++++++++++++++++|++.++++...  + .+.++.+   .+.++|++|||+|++ .+..++++++++|
T Consensus       170 ~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~v~~~~~~--~-~~~~~~~---~~~~~d~vid~~g~~-~~~~~~~~l~~~G  241 (330)
T 1tt7_A          170 MLNKRGY-DVVASTGNREAADYLKQLGASEVISREDV--Y-DGTLKAL---SKQQWQGAVDPVGGK-QLASLLSKIQYGG  241 (330)
T ss_dssp             HHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHHH--C-SSCCCSS---CCCCEEEEEESCCTH-HHHHHHTTEEEEE
T ss_pred             HHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEECCCc--h-HHHHHHh---hcCCccEEEECCcHH-HHHHHHHhhcCCC
Confidence            9999999 58888888999999999999998875321  1 1111222   245799999999985 8899999999999


Q ss_pred             EEEEecccCC-cccccchHHHhcCcEEEEeecc--C-----CCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          235 KVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY--R-----STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       235 ~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~--~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      +++.+|.... ...++...+..+++++.++...  .     +.++++.+++.+|++  ++.++++|++  +++++|++.+
T Consensus       242 ~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~i~~~~~l--~~~~~A~~~~  317 (330)
T 1tt7_A          242 SVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQL--LTIVDREVSL--EETPGALKDI  317 (330)
T ss_dssp             EEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCCSCS--TTSEEEEECS--TTHHHHHHHT
T ss_pred             EEEEEecCCCCccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhcCCc--ccccceEEcH--HHHHHHHHHH
Confidence            9999997543 3345556678899999997432  1     124445556666776  5777889999  9999999999


Q ss_pred             hcCCCceEEEEeC
Q 020928          307 AQGGNAIKVMFNL  319 (319)
Q Consensus       307 ~~~~~~gkvvi~~  319 (319)
                      ++++..||+|+++
T Consensus       318 ~~~~~~gKvvi~~  330 (330)
T 1tt7_A          318 LQNRIQGRVIVKL  330 (330)
T ss_dssp             TTTCCSSEEEECC
T ss_pred             HcCCCCCeEEEeC
Confidence            9888899999974

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=7.9e-42  Score=330.85  Aligned_cols=271  Identities=17%  Similarity=0.258  Sum_probs=226.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++++.|..      +.|.++|||++|+|+++|++|++|++||||++.                     
T Consensus       243 V~V~a~gin~~D~~~~~G~~------~~~~~lG~E~aG~V~~vG~~V~~~~vGDrV~~~---------------------  295 (795)
T 3slk_A          243 IAMRAAGVNFRDALIALGMY------PGVASLGSEGAGVVVETGPGVTGLAPGDRVMGM---------------------  295 (795)
T ss_dssp             EEEEEEEECHHHHHHTTTCC------SSCCCSCCCEEEEEEEECSSCCSSCTTCEEEEC---------------------
T ss_pred             EEEEEEccCHHHHHHHcCCC------CCCccccceeEEEEEEeCCCCCcCCCCCEEEEE---------------------
Confidence            68999999999999988743      446789999999999999999999999999874                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEEC-CCHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G-~g~vG~~ai~la~  157 (319)
                              ..|+|+||+.++...++++|+++++++||+++ .+.|||+++ +.+++++|++|||+| +|++|++++|+||
T Consensus       296 --------~~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk  367 (795)
T 3slk_A          296 --------IPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLAR  367 (795)
T ss_dssp             --------CSSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHH
T ss_pred             --------ecCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence                    36999999999999999999999999999986 578999998 458999999999998 5999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++++++ +.++++ +|+++++++.  ..++.+.+.+++  .+.++|+|||++|++ .++.++++|+++|+++
T Consensus       368 ~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~~~--~~~~~~~i~~~t--~g~GvDvVld~~gg~-~~~~~l~~l~~~Gr~v  439 (795)
T 3slk_A          368 HLGA-EVYATASED-KWQAVE-LSREHLASSR--TCDFEQQFLGAT--GGRGVDVVLNSLAGE-FADASLRMLPRGGRFL  439 (795)
T ss_dssp             HTTC-CEEEECCGG-GGGGSC-SCGGGEECSS--SSTHHHHHHHHS--CSSCCSEEEECCCTT-TTHHHHTSCTTCEEEE
T ss_pred             HcCC-EEEEEeChH-Hhhhhh-cChhheeecC--ChhHHHHHHHHc--CCCCeEEEEECCCcH-HHHHHHHHhcCCCEEE
Confidence            9999 577776555 556665 8999888753  457777776665  477999999999986 7899999999999999


Q ss_pred             EecccCCcccccchHHHhcCcEEEEeecc-------CCCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHHhcCC
Q 020928          238 LIGLAKTEMTVALTPAAAREVDVIGIFRY-------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQGG  310 (319)
Q Consensus       238 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  310 (319)
                      .+|........... ...+++.+.++...       .+.++++++++++|++  ++.+.++|++  +++++|++.+++++
T Consensus       440 ~iG~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l--~p~~~~~~~l--~~~~eA~~~l~~g~  514 (795)
T 3slk_A          440 ELGKTDVRDPVEVA-DAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVL--EPLPVTAWDV--RQAPEALRHLSQAR  514 (795)
T ss_dssp             ECCSTTCCCHHHHH-HHSSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSC--CCCCEEEEEG--GGHHHHHHHHHHTC
T ss_pred             EeccccccCccccc-ccCCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCc--CCCcceeEcH--HHHHHHHHHHhcCC
Confidence            99865433222221 22466666665432       3468889999999998  4567789999  99999999999999


Q ss_pred             CceEEEEeC
Q 020928          311 NAIKVMFNL  319 (319)
Q Consensus       311 ~~gkvvi~~  319 (319)
                      ..||+|+++
T Consensus       515 ~~GKvVl~~  523 (795)
T 3slk_A          515 HVGKLVLTM  523 (795)
T ss_dssp             CCBEEEEEC
T ss_pred             ccceEEEec
Confidence            999999974

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2e-41  Score=298.63  Aligned_cols=279  Identities=18%  Similarity=0.221  Sum_probs=218.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|...  ....+|.++|||++|+|++.  ++++|++||||++....                  
T Consensus        35 Vkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V~~~--~v~~~~vGdrV~~~~~~------------------   92 (328)
T 1xa0_A           35 VRVHYSSVNYKDGLASIPDGK--IVKTYPFVPGIDLAGVVVSS--QHPRFREGDEVIATGYE------------------   92 (328)
T ss_dssp             EEEEEEECCHHHHHHTSGGGS--SCCSSSBCCCSEEEEEEEEC--CSSSCCTTCEEEEESTT------------------
T ss_pred             EEEEEEecCHHHHHhhcCCCC--CCCCCCcccCcceEEEEEec--CCCCCCCCCEEEEcccc------------------
Confidence            689999999999999887431  22367999999999999995  57899999999874210                  


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH---HhcCCCCCC-eEEEECC-CHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC---RRANVGPET-NVMIMGS-GPIGLVTLL  154 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l---~~~~~~~~~-~vlI~G~-g~vG~~ai~  154 (319)
                         + +....|+|+||+.++++.++++|+++++++||+++ .+.|||.++   ++.++++++ +|||+|+ |++|++++|
T Consensus        93 ---~-g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q  168 (328)
T 1xa0_A           93 ---I-GVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVS  168 (328)
T ss_dssp             ---B-TTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHH
T ss_pred             ---C-CCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHH
Confidence               0 11246999999999999999999999999999886 466777765   457899997 9999995 999999999


Q ss_pred             HHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCC
Q 020928          155 AARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGG  234 (319)
Q Consensus       155 la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  234 (319)
                      +|+..|+ +|++++++++++++++++|++.++++...  + .+.++.+   .+.++|++||++|++ .+..++++++++|
T Consensus       169 ~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~--~-~~~~~~~---~~~~~d~vid~~g~~-~~~~~~~~l~~~G  240 (328)
T 1xa0_A          169 MLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLAREDV--M-AERIRPL---DKQRWAAAVDPVGGR-TLATVLSRMRYGG  240 (328)
T ss_dssp             HHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC------------C---CSCCEEEEEECSTTT-THHHHHHTEEEEE
T ss_pred             HHHHCCC-EEEEEECCHHHHHHHHHcCCcEEEecCCc--H-HHHHHHh---cCCcccEEEECCcHH-HHHHHHHhhccCC
Confidence            9999999 68888899999999999999999886432  1 1222332   245899999999986 8899999999999


Q ss_pred             EEEEecccCC-cccccchHHHhcCcEEEEeecc--C-----CCHHHHHHHHHcCCCCCCCceeeeecCChhhHHHHHHHH
Q 020928          235 KVCLIGLAKT-EMTVALTPAAAREVDVIGIFRY--R-----STWPLCIEFLRSGKIDVKPLITHRFGFTQKEIEDAFEIS  306 (319)
Q Consensus       235 ~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~--~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~  306 (319)
                      +++.+|.... ...++...+..+++++.++...  .     +.++++.+++.+| +  ++. .++|++  +++++|++.+
T Consensus       241 ~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-l--~~~-~~~~~l--~~~~~A~~~~  314 (328)
T 1xa0_A          241 AVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-L--ERI-AQEISL--AELPQALKRI  314 (328)
T ss_dssp             EEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-H--HHH-EEEEEG--GGHHHHHHHH
T ss_pred             EEEEEeecCCCCCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHcC-C--cee-eeEeCH--HHHHHHHHHH
Confidence            9999996543 3345556677899999987432  1     2244455555555 4  343 588999  9999999999


Q ss_pred             hcCCCceEEEEeC
Q 020928          307 AQGGNAIKVMFNL  319 (319)
Q Consensus       307 ~~~~~~gkvvi~~  319 (319)
                      ++++..||+|+++
T Consensus       315 ~~~~~~gKvvv~~  327 (328)
T 1xa0_A          315 LRGELRGRTVVRL  327 (328)
T ss_dssp             HHTCCCSEEEEEC
T ss_pred             HcCCCCCeEEEEe
Confidence            9988899999974

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=3.2e-42  Score=309.06  Aligned_cols=278  Identities=14%  Similarity=0.157  Sum_probs=222.5

Q ss_pred             CCcceEeeccCCccccccccc------------cc--------------cccCCCcccccceeEEEEEeCCCC-CCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRC------------AN--------------FIVKKPMVIGHECAGIIEEVGSEV-KSLEVG   53 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~------------~~--------------~~~~~p~i~G~e~~G~V~~~G~~v-~~~~~G   53 (319)
                      |||+++|||++|+++++|...            +.              ...++|.++|||++|+|+++|++| ++|++|
T Consensus        37 Vkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vG  116 (379)
T 3iup_A           37 IRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMG  116 (379)
T ss_dssp             EEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHHGGGTTEEEECCSCEEEEEEEECSSHHHHTTTT
T ss_pred             EEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccccccccCCCccceeeeEEEEEEeCCCcccCCCCC
Confidence            689999999999999987420            00              023578999999999999999999 899999


Q ss_pred             CEEEEccCccCCCCccccCCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhc
Q 020928           54 DRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRA  132 (319)
Q Consensus        54 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~  132 (319)
                      |||++.                             ..|+|+||+.++++.++++|+++++++||.++ ...|||++++..
T Consensus       117 drV~~~-----------------------------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~  167 (379)
T 3iup_A          117 KTVAAI-----------------------------GGAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETM  167 (379)
T ss_dssp             CEEEEC-----------------------------CSCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHHHHH
T ss_pred             CEEEec-----------------------------CCCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHh
Confidence            999974                             25999999999999999999999999999775 567789888776


Q ss_pred             CCCCCCeEEEE--CCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          133 NVGPETNVMIM--GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       133 ~~~~~~~vlI~--G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      + +++++|||+  |+|++|++++|+|+.+|+ +|+++++++++.++++++|+++++++.  .+++.+.+++++.  +.++
T Consensus       168 ~-~~g~~vlV~gag~G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~--~~~~~~~v~~~t~--~~g~  241 (379)
T 3iup_A          168 R-LEGHSALVHTAAASNLGQMLNQICLKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAA--SPTFMQDLTEALV--STGA  241 (379)
T ss_dssp             H-HTTCSCEEESSTTSHHHHHHHHHHHHHTC-CEEEEESSHHHHHHHHHTTCSCEEETT--STTHHHHHHHHHH--HHCC
T ss_pred             c-cCCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCC--ChHHHHHHHHHhc--CCCc
Confidence            6 899999999  579999999999999999 688888999999999999999998864  3577777776653  4589


Q ss_pred             cEEEEccCChHHHHHHHHhhc-----CC-----------CEEEEecccCCcccccchHHHhcCcEEEEeecc-------C
Q 020928          211 DVSFDCVGFDKTMSTALNATR-----PG-----------GKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-------R  267 (319)
Q Consensus       211 d~v~d~~g~~~~~~~~~~~l~-----~~-----------G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-------~  267 (319)
                      |++|||+|++...+.++++++     ++           |+++.+|... ..+........+++++.+++..       .
T Consensus       242 d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  320 (379)
T 3iup_A          242 TIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLD-TSPTEFNRNFGMAWGMGGWLLFPFLQKIGR  320 (379)
T ss_dssp             CEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSE-EEEEEECCCSCSCEEEEECCHHHHHHHHCH
T ss_pred             eEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecCCC-CCccccccccccceEEEEEEeeeecccCCH
Confidence            999999998767788888874     55           4555554322 1123334456678888887542       1


Q ss_pred             ----CCHHHHHHHHHcCCCCCCCceeeeecCChhhH--HHHHHHHhcCCCceEEEEeC
Q 020928          268 ----STWPLCIEFLRSGKIDVKPLITHRFGFTQKEI--EDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       268 ----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~gkvvi~~  319 (319)
                          +.++++++++.+ .+  .+.++++|++  +++  ++|++.+.+++..||+|+++
T Consensus       321 ~~~~~~~~~~~~~~~~-~l--~~~i~~~~~l--~~~~~~~A~~~l~~~~~~gKvVv~~  373 (379)
T 3iup_A          321 ERANALKQRVVAELKT-TF--ASHYSKEISL--AEVLDLDMIAVYNKRATGEKYLINP  373 (379)
T ss_dssp             HHHHHHHHHHHHTTTT-TT--CCCCSEEEEH--HHHTCHHHHHHHTTCCTTCCEEEET
T ss_pred             HHHHHHHHHHHHHHhc-cC--CCcceEEecH--HHhhhHHHHHHHhcCCCCceEEEeC
Confidence                223455566555 33  6777889999  999  99999999999999999974

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=2.7e-40  Score=294.78  Aligned_cols=277  Identities=18%  Similarity=0.184  Sum_probs=226.2

Q ss_pred             CCcceEeeccCCcccccccc--ccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMR--CANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLC   78 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~--~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~   78 (319)
                      |||.++|||++|++.+.+..  ....+..+|.++|||++|+|++  ++|++|++||||++.                   
T Consensus        47 Vkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~--~~v~~~~vGdrV~~~-------------------  105 (357)
T 2zb4_A           47 VRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEE--SKHTNLTKGDFVTSF-------------------  105 (357)
T ss_dssp             EEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEEEEEEEEE--ECSTTCCTTCEEEEE-------------------
T ss_pred             EEEEEEecCHHHHhhccccccccccCCCCCCccccccEEEEEEe--cCCCCCCCCCEEEec-------------------
Confidence            68999999999998776521  1111346789999999999999  889999999999863                   


Q ss_pred             CCcccccCCCCCCcceeEEeecCCceEeCCCCC-----ChhhhhccchhHHHHHHH-HhcCCCCC--CeEEEECC-CHHH
Q 020928           79 PEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNV-----SLEEGAMCEPLSVGVHAC-RRANVGPE--TNVMIMGS-GPIG  149 (319)
Q Consensus        79 ~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~-----~~~~aa~~~~~~~a~~~l-~~~~~~~~--~~vlI~G~-g~vG  149 (319)
                                 .|+|+||+.++++.++++|+++     +++.|++..++.|||+++ +.++++++  ++|||+|+ |++|
T Consensus       106 -----------~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG  174 (357)
T 2zb4_A          106 -----------YWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACG  174 (357)
T ss_dssp             -----------EEESBSEEEEEGGGCEECCGGGGTTCGGGGGTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHH
T ss_pred             -----------CCCcEEEEEEchHHceecCcccccCchhHHHHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHH
Confidence                       3899999999999999999999     666555556899999999 67999999  99999995 9999


Q ss_pred             HHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHH
Q 020928          150 LVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALN  228 (319)
Q Consensus       150 ~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~  228 (319)
                      ++++|+|+..|+++|+++++++++.+.+++ +|++.++++..  .++.+.+.++.   +.++|++||++|+ ..++.+++
T Consensus       175 ~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~---~~~~d~vi~~~G~-~~~~~~~~  248 (357)
T 2zb4_A          175 SVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK--DNVAEQLRESC---PAGVDVYFDNVGG-NISDTVIS  248 (357)
T ss_dssp             HHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTT--SCHHHHHHHHC---TTCEEEEEESCCH-HHHHHHHH
T ss_pred             HHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCc--hHHHHHHHHhc---CCCCCEEEECCCH-HHHHHHHH
Confidence            999999999998678888899999898887 99998887643  45555655544   2389999999997 48899999


Q ss_pred             hhcCCCEEEEecccCCc-ccccc---------hHHHhcCcEEEEeecc------CCCHHHHHHHHHcCCCCCCCceeeee
Q 020928          229 ATRPGGKVCLIGLAKTE-MTVAL---------TPAAAREVDVIGIFRY------RSTWPLCIEFLRSGKIDVKPLITHRF  292 (319)
Q Consensus       229 ~l~~~G~~v~~g~~~~~-~~~~~---------~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~  292 (319)
                      +++++|+++.+|..... ..++.         ..+..+++++.++...      .+.++++++++++|++++.  ...+|
T Consensus       249 ~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~  326 (357)
T 2zb4_A          249 QMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIK--ETVIN  326 (357)
T ss_dssp             TEEEEEEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCC--EEEEE
T ss_pred             HhccCcEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCc--cceec
Confidence            99999999999864321 12221         3567789999987642      3457899999999999554  44568


Q ss_pred             cCChhhHHHHHHHHhcCCCceEEEEeC
Q 020928          293 GFTQKEIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       293 ~~~~~~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++  +++++|++.+++++..||+|+++
T Consensus       327 ~l--~~~~~A~~~~~~~~~~gKvvi~~  351 (357)
T 2zb4_A          327 GL--ENMGAAFQSMMTGGNIGKQIVCI  351 (357)
T ss_dssp             CG--GGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             CH--HHHHHHHHHHHcCCCCceEEEEE
Confidence            88  99999999999988889999974

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=4.3e-40  Score=286.81  Aligned_cols=261  Identities=23%  Similarity=0.357  Sum_probs=216.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|....  ..++|.++|||++|+|+           ||||++.+                    
T Consensus        30 Vkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~e~~G~V~-----------GdrV~~~~--------------------   76 (302)
T 1iz0_A           30 LRVEAVGLNFADHLMRLGAYLT--RLHPPFIPGMEVVGVVE-----------GRRYAALV--------------------   76 (302)
T ss_dssp             EEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCCEEEEEET-----------TEEEEEEC--------------------
T ss_pred             EEEEEEecCHHHHHHhCCCCCC--CCCCCCcccceEEEEEE-----------CcEEEEec--------------------
Confidence            6899999999999999874321  23679999999999997           99998742                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHH-hcCCCCCCeEEEECC-CHHHHHHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACR-RANVGPETNVMIMGS-GPIGLVTLLAAR  157 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~-~~~~~~~~~vlI~G~-g~vG~~ai~la~  157 (319)
                              .+|+|+||+.++++.++++|+++++++||+++ ++.|||+++. .+ +++|++|||+|+ |++|++++|+|+
T Consensus        77 --------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~  147 (302)
T 1iz0_A           77 --------PQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVAR  147 (302)
T ss_dssp             --------SSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHH
T ss_pred             --------CCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHH
Confidence                    36999999999999999999999999998775 8899999996 57 999999999995 999999999999


Q ss_pred             HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEE
Q 020928          158 AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       158 ~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      ..|+ +|+++++++++.++++++|++.++++... +++.+   .+     .++|++|| +|++ .++.++++++++|+++
T Consensus       148 ~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~-~~~~~---~~-----~~~d~vid-~g~~-~~~~~~~~l~~~G~~v  215 (302)
T 1iz0_A          148 AMGL-RVLAAASRPEKLALPLALGAEEAATYAEV-PERAK---AW-----GGLDLVLE-VRGK-EVEESLGLLAHGGRLV  215 (302)
T ss_dssp             HTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGGH-HHHHH---HT-----TSEEEEEE-CSCT-THHHHHTTEEEEEEEE
T ss_pred             HCCC-EEEEEeCCHHHHHHHHhcCCCEEEECCcc-hhHHH---Hh-----cCceEEEE-CCHH-HHHHHHHhhccCCEEE
Confidence            9999 89999999999999999999988775310 22222   12     47999999 9985 8899999999999999


Q ss_pred             EecccCCc-ccccchHHHhcCcEEEEeecc-----CCCHHHHHH---HHHcCCCCCCCceeeeecCChhhHHHHHHHHhc
Q 020928          238 LIGLAKTE-MTVALTPAAAREVDVIGIFRY-----RSTWPLCIE---FLRSGKIDVKPLITHRFGFTQKEIEDAFEISAQ  308 (319)
Q Consensus       238 ~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~  308 (319)
                      .+|..... ..++...+..+++++.++...     .+.++++++   ++.+|++  ++.++++|++  +++++|++.+++
T Consensus       216 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l--~~~~~A~~~~~~  291 (302)
T 1iz0_A          216 YIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGREL--RPVVGPVFPF--AEAEAAFRALLD  291 (302)
T ss_dssp             EC-------CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTTTB--CCCEEEEEEG--GGHHHHHHHTTC
T ss_pred             EEeCCCCCCCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcCCc--ccccceEEcH--HHHHHHHHHHHc
Confidence            99865432 245556678899999998642     345788889   9999998  5678899999  999999999998


Q ss_pred             CCCceEEEEeC
Q 020928          309 GGNAIKVMFNL  319 (319)
Q Consensus       309 ~~~~gkvvi~~  319 (319)
                      ++..||+++++
T Consensus       292 ~~~~gKvvv~~  302 (302)
T 1iz0_A          292 RGHTGKVVVRL  302 (302)
T ss_dssp             TTCCBEEEEEC
T ss_pred             CCCCceEEEeC
Confidence            88889999874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=6.2e-38  Score=278.31  Aligned_cols=277  Identities=14%  Similarity=0.151  Sum_probs=221.8

Q ss_pred             CCcceEeeccCCccccccccccc-cccCCCcccccceeEEEEE--eCCCCCCCCCCCEEEEccCccCCCCccccCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCAN-FIVKKPMVIGHECAGIIEE--VGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNL   77 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~-~~~~~p~i~G~e~~G~V~~--~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~   77 (319)
                      |||.++|+|+.|. ...|..... ....+|+++|||++|+++.  +|+++++|++||||++                   
T Consensus        43 Vkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~~GvV~~~v~~~~vGdrV~~-------------------  102 (345)
T 2j3h_A           43 VKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWG-------------------  102 (345)
T ss_dssp             EEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEEEEEEEECSTTCCTTCEEEE-------------------
T ss_pred             EEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceEEEEEecCCCCCCCCCEEEe-------------------
Confidence            6899999888875 333422110 0124689999999999999  9999999999999985                   


Q ss_pred             CCCcccccCCCCCCcceeEEeecCCc--eEeCCC---CCChhhhhccchhHHHHHHH-HhcCCCCCCeEEEECC-CHHHH
Q 020928           78 CPEMRFFGSPPTNGSLAHKVVHPAKL--CYKLPD---NVSLEEGAMCEPLSVGVHAC-RRANVGPETNVMIMGS-GPIGL  150 (319)
Q Consensus        78 ~~~~~~~~~~~~~g~~~e~~~~~~~~--~~~iP~---~~~~~~aa~~~~~~~a~~~l-~~~~~~~~~~vlI~G~-g~vG~  150 (319)
                                  .|+|+||+.+++..  ++++|+   +++++.|++..++.|||+++ +.++++++++|||+|+ |++|+
T Consensus       103 ------------~g~~aey~~v~~~~~~~~~ip~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~  170 (345)
T 2j3h_A          103 ------------IVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQ  170 (345)
T ss_dssp             ------------EEESBSEEEECCCTTTCEEECCCSSCTTGGGTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHH
T ss_pred             ------------ecCceeEEEecccccceeecCCCCCCHHHHHHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHH
Confidence                        37899999999876  999996   46666444445889999999 4589999999999995 99999


Q ss_pred             HHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHh
Q 020928          151 VTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA  229 (319)
Q Consensus       151 ~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~  229 (319)
                      +++|+|+..|+ +|+++++++++.+.++ ++|++.++++.. ..++.+.+.++.   +.++|++||++|++ .++.++++
T Consensus       171 ~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~~~~~~---~~~~d~vi~~~g~~-~~~~~~~~  244 (345)
T 2j3h_A          171 LVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE-ESDLTAALKRCF---PNGIDIYFENVGGK-MLDAVLVN  244 (345)
T ss_dssp             HHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCCSEEEETTS-CSCSHHHHHHHC---TTCEEEEEESSCHH-HHHHHHTT
T ss_pred             HHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEecCC-HHHHHHHHHHHh---CCCCcEEEECCCHH-HHHHHHHH
Confidence            99999999999 7999999999999998 799998887643 235555555543   36899999999974 88999999


Q ss_pred             hcCCCEEEEecccCC------cccccchHHHhcCcEEEEeeccC--C----CHHHHHHHHHcCCCCCCCceeeeecCChh
Q 020928          230 TRPGGKVCLIGLAKT------EMTVALTPAAAREVDVIGIFRYR--S----TWPLCIEFLRSGKIDVKPLITHRFGFTQK  297 (319)
Q Consensus       230 l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~~~~~~~--~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  297 (319)
                      ++++|+++.+|....      ...++...+..+++++.++....  +    .++++++++++|+++  +.+.++|++  +
T Consensus       245 l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~--~~~~~~~~l--~  320 (345)
T 2j3h_A          245 MNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKIT--YVEDVADGL--E  320 (345)
T ss_dssp             EEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSC--CCEEEEESG--G
T ss_pred             HhcCCEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCc--CcccccCCH--H
Confidence            999999999986432      23445566788999999876541  2    378899999999994  566667888  9


Q ss_pred             hHHHHHHHHhcCCCceEEEEeC
Q 020928          298 EIEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       298 ~~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      ++++|++.+++++..||+|+++
T Consensus       321 ~~~~A~~~~~~~~~~gKvvv~~  342 (345)
T 2j3h_A          321 KAPEALVGLFHGKNVGKQVVVV  342 (345)
T ss_dssp             GSHHHHHHHHTTCCSSEEEEES
T ss_pred             HHHHHHHHHHcCCCceEEEEEe
Confidence            9999999999998899999974

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=4.7e-37  Score=271.29  Aligned_cols=269  Identities=16%  Similarity=0.199  Sum_probs=218.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+.+ .      .+..+|.++|||++|+|++.  ++++|++||||++                      
T Consensus        43 Vkv~a~gi~~~~~~~-~------~~~~~p~~~g~e~~G~Vv~~--~v~~~~vGdrV~~----------------------   91 (333)
T 1v3u_A           43 LEALFLSVDPYMRIA-S------KRLKEGAVMMGQQVARVVES--KNSAFPAGSIVLA----------------------   91 (333)
T ss_dssp             EEEEEEECCTHHHHH-T------TTCCTTSBCCCCEEEEEEEE--SCTTSCTTCEEEE----------------------
T ss_pred             EEEEEeccCHHHccc-c------CcCCCCcccccceEEEEEec--CCCCCCCCCEEEe----------------------
Confidence            689999999988732 1      13357889999999999995  5789999999985                      


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCC----CChhhh-hcc-chhHHHHHHH-HhcCCCCCCeEEEECC-CHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDN----VSLEEG-AMC-EPLSVGVHAC-RRANVGPETNVMIMGS-GPIGLVT  152 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~----~~~~~a-a~~-~~~~~a~~~l-~~~~~~~~~~vlI~G~-g~vG~~a  152 (319)
                               .|+|+||+.++++.++++|++    ++++++ |++ .++.|||+++ +.++++++++|||+|+ |++|+++
T Consensus        92 ---------~g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~  162 (333)
T 1v3u_A           92 ---------QSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVV  162 (333)
T ss_dssp             ---------CCCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHH
T ss_pred             ---------cCceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHH
Confidence                     388999999999999999997    888873 444 5889999999 5589999999999995 9999999


Q ss_pred             HHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcC
Q 020928          153 LLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRP  232 (319)
Q Consensus       153 i~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  232 (319)
                      +|+++..|+ +|+++++++++.+.++++|++.++++.. .+++.+.+.++.   ++++|++||++|++ .+..+++++++
T Consensus       163 ~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~~~~~~---~~~~d~vi~~~g~~-~~~~~~~~l~~  236 (333)
T 1v3u_A          163 GQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT-VNSLEEALKKAS---PDGYDCYFDNVGGE-FLNTVLSQMKD  236 (333)
T ss_dssp             HHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS-CSCHHHHHHHHC---TTCEEEEEESSCHH-HHHHHHTTEEE
T ss_pred             HHHHHHCCC-EEEEEeCCHHHHHHHHhcCCcEEEecCC-HHHHHHHHHHHh---CCCCeEEEECCChH-HHHHHHHHHhc
Confidence            999999999 7889999999999999999988877542 145655655554   35899999999975 78899999999


Q ss_pred             CCEEEEecccCC------cc-cccchHHHhcCcEEEEeecc-------CCCHHHHHHHHHcCCCCCCCceeeeecCChhh
Q 020928          233 GGKVCLIGLAKT------EM-TVALTPAAAREVDVIGIFRY-------RSTWPLCIEFLRSGKIDVKPLITHRFGFTQKE  298 (319)
Q Consensus       233 ~G~~v~~g~~~~------~~-~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  298 (319)
                      +|+++.+|....      .. .++...++.+++++.++...       .+.++++++++++|++++.+  ..++++  ++
T Consensus       237 ~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~--~~~~~l--~~  312 (333)
T 1v3u_A          237 FGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHE--HVTKGF--EN  312 (333)
T ss_dssp             EEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCE--EEEECG--GG
T ss_pred             CCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCcc--ccccCH--HH
Confidence            999999986432      11 12445678899999998653       23567899999999995543  445778  99


Q ss_pred             HHHHHHHHhcCCCceEEEEeC
Q 020928          299 IEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       299 ~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +++|++.+++++..||+|+++
T Consensus       313 ~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          313 MPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             HHHHHHHHHTTCCSBEEEEEC
T ss_pred             HHHHHHHHHcCCCCceEEEeC
Confidence            999999999988899999975

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.97  E-value=3.6e-31  Score=280.65  Aligned_cols=271  Identities=20%  Similarity=0.268  Sum_probs=215.7

Q ss_pred             CCcceEeeccCCcccccccccccc----ccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANF----IVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYN   76 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~----~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~   76 (319)
                      |||.++|+|+.|+.+..|......    ....|.++|+|++|+|          .+||||++..                
T Consensus      1564 VkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V----------~vGdrV~g~~---------------- 1617 (2512)
T 2vz8_A         1564 CSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRD----------ASGRRVMGMV---------------- 1617 (2512)
T ss_dssp             EEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEE----------TTSCCEEEEC----------------
T ss_pred             EEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEE----------ccCCEEEEee----------------
Confidence            589999999999999887542210    1234678999999987          3799998742                


Q ss_pred             CCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEEC-CCHHHHHHH
Q 020928           77 LCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG-SGPIGLVTL  153 (319)
Q Consensus        77 ~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G-~g~vG~~ai  153 (319)
                                  ..|+|+||+.++++.++++|+++++++||+++ .+.|||+++ +.+++++|++|||+| +|++|++++
T Consensus      1618 ------------~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAi 1685 (2512)
T 2vz8_A         1618 ------------PAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAI 1685 (2512)
T ss_dssp             ------------SSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHH
T ss_pred             ------------cCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHH
Confidence                        35899999999999999999999999999987 688999999 458999999999997 599999999


Q ss_pred             HHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHh
Q 020928          154 LAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA  229 (319)
Q Consensus       154 ~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~  229 (319)
                      |+|+..|+ +|++++.++++.+++++    +|+++++++.  ..++.+.+.+++  .+.++|+|||++++ +.++.++++
T Consensus      1686 qlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~~--~~~~~~~i~~~t--~g~GvDvVld~~g~-~~l~~~l~~ 1759 (2512)
T 2vz8_A         1686 AIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANSR--DTSFEQHVLRHT--AGKGVDLVLNSLAE-EKLQASVRC 1759 (2512)
T ss_dssp             HHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEESS--SSHHHHHHHHTT--TSCCEEEEEECCCH-HHHHHHHTT
T ss_pred             HHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecCC--CHHHHHHHHHhc--CCCCceEEEECCCc-hHHHHHHHh
Confidence            99999999 78888899999999986    6788887753  346666665544  36789999999985 589999999


Q ss_pred             hcCCCEEEEecccCCcc-cccchHHHhcCcEEEEeecc------CCCHHHHHHHH----HcCCCCCCCceeeeecCChhh
Q 020928          230 TRPGGKVCLIGLAKTEM-TVALTPAAAREVDVIGIFRY------RSTWPLCIEFL----RSGKIDVKPLITHRFGFTQKE  298 (319)
Q Consensus       230 l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~  298 (319)
                      ++++|+++.+|...... .........+++++.+....      ...+.++++++    .+|.+  .+.+.++|++  ++
T Consensus      1760 L~~~Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l--~p~i~~~f~l--~e 1835 (2512)
T 2vz8_A         1760 LAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVV--QPLKCTVFPR--TK 1835 (2512)
T ss_dssp             EEEEEEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCS--CCCCEEEEES--ST
T ss_pred             cCCCcEEEEeecccccccCcccccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCc--CCCcceEecH--HH
Confidence            99999999998532111 11223355678888886542      22345555554    45666  5677889999  99


Q ss_pred             HHHHHHHHhcCCCceEEEEeC
Q 020928          299 IEDAFEISAQGGNAIKVMFNL  319 (319)
Q Consensus       299 ~~~a~~~~~~~~~~gkvvi~~  319 (319)
                      +++|++.+++++..||+|+++
T Consensus      1836 i~eA~~~l~~g~~~GKvVi~~ 1856 (2512)
T 2vz8_A         1836 VEAAFRYMAQGKHIGKVVIQV 1856 (2512)
T ss_dssp             HHHHHHHHHTTCCSSEEEEEC
T ss_pred             HHHHHHhhhccCccceEEEEC
Confidence            999999999999999999864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.86  E-value=5.1e-21  Score=155.99  Aligned_cols=178  Identities=20%  Similarity=0.368  Sum_probs=129.3

Q ss_pred             CceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH
Q 020928          102 KLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  178 (319)
Q Consensus       102 ~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~  178 (319)
                      +.++++|+++++++||+++ ++.|||+++.+ ++++++++|||+| +|++|++++|+++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4688999999999999885 89999999964 8999999999998 69999999999999998 7888999999998999


Q ss_pred             HcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCC--cccccchHHHhc
Q 020928          179 NLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT--EMTVALTPAAAR  256 (319)
Q Consensus       179 ~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~  256 (319)
                      ++|++.++++..  .++.+.+.+...  +.++|++||++|.. .+..++++|+++|+++.+|....  ...+... ...+
T Consensus        81 ~~g~~~~~d~~~--~~~~~~~~~~~~--~~~~D~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~  154 (198)
T 1pqw_A           81 RLGVEYVGDSRS--VDFADEILELTD--GYGVDVVLNSLAGE-AIQRGVQILAPGGRFIELGKKDVYADASLGLA-ALAK  154 (198)
T ss_dssp             TTCCSEEEETTC--STHHHHHHHHTT--TCCEEEEEECCCTH-HHHHHHHTEEEEEEEEECSCGGGTTTCEEEGG-GGTT
T ss_pred             HcCCCEEeeCCc--HHHHHHHHHHhC--CCCCeEEEECCchH-HHHHHHHHhccCCEEEEEcCCCCcCcCcCChh-HhcC
Confidence            999888776542  344445444432  35799999999864 88999999999999999986432  2223322 3357


Q ss_pred             CcEEEEeec------c----CCCHHHHHHHHHcCCCCCCC
Q 020928          257 EVDVIGIFR------Y----RSTWPLCIEFLRSGKIDVKP  286 (319)
Q Consensus       257 ~~~i~~~~~------~----~~~~~~~~~~~~~g~~~~~~  286 (319)
                      ++++.+...      .    .+.++++++++++|++++.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~  194 (198)
T 1pqw_A          155 SASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLP  194 (198)
T ss_dssp             TCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             CcEEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCCC
Confidence            788875421      1    34678899999999996543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.26  E-value=2.8e-11  Score=101.51  Aligned_cols=169  Identities=11%  Similarity=0.056  Sum_probs=113.2

Q ss_pred             CCCCCEEEEcc-------CccCCCCccccCCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhh-----
Q 020928           50 LEVGDRVALEP-------GISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA-----  117 (319)
Q Consensus        50 ~~~Gd~V~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa-----  117 (319)
                      +++||||+..+       ..+|++|.+|..|.+++|+....     ..|...      +..+++.|+...+.+.+     
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~-----~~G~~~------~~~~~~~p~~~~~~~~~~~~~~   72 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGK-----PEGVKI------NGFEVYRPTLEEIILLGFERKT   72 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTC-----CTTEEE------TTEEEECCCHHHHHHHTSCCSS
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCC-----CCCCEE------EEEEEeCCCHHHHHHhcCcCCC
Confidence            89999999987       67899999999998888865421     123222      33444444432222222     


Q ss_pred             -ccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CC-CEeeccCCC
Q 020928          118 -MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GA-DETAKVSTD  191 (319)
Q Consensus       118 -~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~-~~v~~~~~~  191 (319)
                       .+.+.. +.+.+...+++++++||.+|+| .|..++.+++. +. ++++++.+++..+.+++.    +. ..+....  
T Consensus        73 ~~~~~~~-~~~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~--  146 (248)
T 2yvl_A           73 QIIYPKD-SFYIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFN--  146 (248)
T ss_dssp             CCCCHHH-HHHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHHHHHHHHHHTTCCTTEEEEC--
T ss_pred             Ccccchh-HHHHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEE--
Confidence             222333 3356677889999999999998 49999999998 65 899999999988887763    32 1111111  


Q ss_pred             CcchhHHHHHhhhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEEEEecc
Q 020928          192 IEDVDTDVGKIQNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       192 ~~~~~~~i~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~  241 (319)
                       .++.+    .. ..+.++|+|+...+.+ ..+..+.+.|+++|+++....
T Consensus       147 -~d~~~----~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          147 -VDFKD----AE-VPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             -SCTTT----SC-CCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             -cChhh----cc-cCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence             11111    10 0135799999988765 678899999999999987653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.03  E-value=4.6e-12  Score=113.86  Aligned_cols=181  Identities=17%  Similarity=0.250  Sum_probs=129.6

Q ss_pred             cccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCCcccccCCCCCCcceeEEeecCCceEeCCC
Q 020928           30 MVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPD  109 (319)
Q Consensus        30 ~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~  109 (319)
                      ...|+|.++.|..+|++++++.+|++++.-...         .+          +......|++++|+......++.+|+
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk---------~~----------~~~~~~~G~~~~~~~~~~~~a~~~~k  135 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVK---------KA----------YDRAARLGTLDEALKIVFRRAINLGK  135 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHH---------HH----------HHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHH---------HH----------HHHHHHcCCchHHHHHHHHHHhhhhc
Confidence            357889999999999999999999987421000         00          00011246788888888888999999


Q ss_pred             CCChhhhhccchhHHHHHHHHhcC----CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHH-HHHHHcCCCE
Q 020928          110 NVSLEEGAMCEPLSVGVHACRRAN----VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL-SIARNLGADE  184 (319)
Q Consensus       110 ~~~~~~aa~~~~~~~a~~~l~~~~----~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~-~~~~~~g~~~  184 (319)
                      .++.++++...+..++|.+++.+.    -.++++|+|+|+|.+|.++++.++..|+++|+++++++++. ++++++|++ 
T Consensus       136 ~v~~~~~~~~~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~-  214 (404)
T 1gpj_A          136 RAREETRISEGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-  214 (404)
T ss_dssp             HHHHHSSTTCSCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-
T ss_pred             cCcchhhhcCCCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-
Confidence            988888776667778888775432    25799999999999999999999999987899999998886 678888875 


Q ss_pred             eeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHH--HHHHHh--h--cCCCEEEEeccc
Q 020928          185 TAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTM--STALNA--T--RPGGKVCLIGLA  242 (319)
Q Consensus       185 v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~--~~~~~~--l--~~~G~~v~~g~~  242 (319)
                      ++++    .++    .+..    .++|+|+++++.+..+  ...++.  +  ++++.++.++..
T Consensus       215 ~~~~----~~l----~~~l----~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          215 AVRF----DEL----VDHL----ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             ECCG----GGH----HHHH----HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             eecH----HhH----HHHh----cCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            3222    122    2222    3689999999875322  134444  4  567777777754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.88  E-value=2.9e-09  Score=94.21  Aligned_cols=135  Identities=19%  Similarity=0.267  Sum_probs=93.6

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +++|+|+|+|++|+++++.++.+|+ +|+++++++++.+.++++++..+........+    +.+..    .++|+||+|
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~DvVI~~  237 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNSAE----IETAV----AEADLLIGA  237 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCHHH----HHHHH----HTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCHHH----HHHHH----cCCCEEEEC
Confidence            4899999999999999999999999 89999999999999888765432111111112    21111    268999999


Q ss_pred             cCChHH------HHHHHHhhcCCCEEEEecccCC-------cccccchHHHhcCcEEEEeecc-------------CCCH
Q 020928          217 VGFDKT------MSTALNATRPGGKVCLIGLAKT-------EMTVALTPAAAREVDVIGIFRY-------------RSTW  270 (319)
Q Consensus       217 ~g~~~~------~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~~~~~i~~~~~~-------------~~~~  270 (319)
                      ++.+..      ....++.++++|+++.++....       ..+++...+..+++.+.+....             ...+
T Consensus       238 ~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~  317 (361)
T 1pjc_A          238 VLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTL  317 (361)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHH
Confidence            987531      5667889999999999985432       2233333455677887775432             2234


Q ss_pred             HHHHHHHHcC
Q 020928          271 PLCIEFLRSG  280 (319)
Q Consensus       271 ~~~~~~~~~g  280 (319)
                      ..+++++.+|
T Consensus       318 ~~l~~l~~~G  327 (361)
T 1pjc_A          318 PYVVKLANQG  327 (361)
T ss_dssp             HHHHHHHHHG
T ss_pred             HHHHHHHhCC
Confidence            6677777777

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.69  E-value=7.4e-08  Score=85.85  Aligned_cols=143  Identities=17%  Similarity=0.230  Sum_probs=97.4

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEe-eccCCC-------------Ccc----hhH
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET-AKVSTD-------------IED----VDT  197 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v-~~~~~~-------------~~~----~~~  197 (319)
                      ++++|+|+|+|.+|+.++++|+.+|+ +|++.++++++.+.++++|++.+ ++....             .++    ...
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68999999999999999999999999 69999999999888888998654 121100             000    111


Q ss_pred             HHHHhhhhcCCCccEEEEcc---CChH--H-HHHHHHhhcCCCEEEEecccC-Cc--ccccchHHHhcCcEEEEeeccCC
Q 020928          198 DVGKIQNAMGSGIDVSFDCV---GFDK--T-MSTALNATRPGGKVCLIGLAK-TE--MTVALTPAAAREVDVIGIFRYRS  268 (319)
Q Consensus       198 ~i~~~~~~~~~~~d~v~d~~---g~~~--~-~~~~~~~l~~~G~~v~~g~~~-~~--~~~~~~~~~~~~~~i~~~~~~~~  268 (319)
                      .+.++.    .++|+||+|+   |.+.  . ....++.|++++.++.++... ..  ...+...+..+++++.+....+.
T Consensus       250 ~l~~~~----~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~p~  325 (384)
T 1l7d_A          250 AVLKEL----VKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPS  325 (384)
T ss_dssp             HHHHHH----TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSGGG
T ss_pred             HHHHHh----CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCCcc
Confidence            122222    3699999999   5321  2 367888999999999998532 21  11233334567888888766533


Q ss_pred             C-HHHHHHHHHcCCCC
Q 020928          269 T-WPLCIEFLRSGKID  283 (319)
Q Consensus       269 ~-~~~~~~~~~~g~~~  283 (319)
                      . ...+.+++.++.+.
T Consensus       326 ~~~~~a~~l~~~~~~~  341 (384)
T 1l7d_A          326 RVAADASPLFAKNLLN  341 (384)
T ss_dssp             GGHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHHH
Confidence            3 45578888777653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.64  E-value=1.5e-07  Score=83.42  Aligned_cols=136  Identities=19%  Similarity=0.273  Sum_probs=86.7

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+++ +|.....+.. ..    ..+.+..    .++|+++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~-~~----~~l~~~~----~~~DvVi  234 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTA-TE----ANIKKSV----QHADLLI  234 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEEC-CH----HHHHHHH----HHCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecC-CH----HHHHHHH----hCCCEEE
Confidence            35899999999999999999999999 89999999998887766 6765322221 11    1232222    2689999


Q ss_pred             EccCChHH------HHHHHHhhcCCCEEEEecccCC-------cccccchHHHhcCcEEEEeecc-------------CC
Q 020928          215 DCVGFDKT------MSTALNATRPGGKVCLIGLAKT-------EMTVALTPAAAREVDVIGIFRY-------------RS  268 (319)
Q Consensus       215 d~~g~~~~------~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~~~~~i~~~~~~-------------~~  268 (319)
                      +|++.+..      .+..++.|+++|+++.++....       +.+++...+..+++.+.+....             ..
T Consensus       235 ~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~  314 (369)
T 2eez_A          235 GAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQ  314 (369)
T ss_dssp             ECCC-------CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHH
T ss_pred             ECCCCCccccchhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHH
Confidence            99996531      5678889999999999985432       1122222344567777664422             22


Q ss_pred             CHHHHHHHHHcCC
Q 020928          269 TWPLCIEFLRSGK  281 (319)
Q Consensus       269 ~~~~~~~~~~~g~  281 (319)
                      .++.+++++.+|.
T Consensus       315 ~~~~l~~l~~~g~  327 (369)
T 2eez_A          315 TLPYVLKLAEKGL  327 (369)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCh
Confidence            3456677776663

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.64  E-value=1.2e-07  Score=84.32  Aligned_cols=119  Identities=14%  Similarity=0.232  Sum_probs=83.6

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+++ +|+....++. ..    ..+.++.    .++|+|+
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~-~~----~~l~~~l----~~aDvVi  236 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYS-SA----YELEGAV----KRADLVI  236 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEEC-CH----HHHHHHH----HHCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccC-CH----HHHHHHH----cCCCEEE
Confidence            57899999999999999999999999 89999999999888877 6765322211 11    1222222    2689999


Q ss_pred             EccCChHH------HHHHHHhhcCCCEEEEecccC-------CcccccchHHHhcCcEEEEee
Q 020928          215 DCVGFDKT------MSTALNATRPGGKVCLIGLAK-------TEMTVALTPAAAREVDVIGIF  264 (319)
Q Consensus       215 d~~g~~~~------~~~~~~~l~~~G~~v~~g~~~-------~~~~~~~~~~~~~~~~i~~~~  264 (319)
                      +|++.+..      ....++.|+++|.++.++...       .+.+++...+..+++.+.+..
T Consensus       237 ~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~p  299 (377)
T 2vhw_A          237 GAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVA  299 (377)
T ss_dssp             ECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECBT
T ss_pred             ECCCcCCCCCcceecHHHHhcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEEEecC
Confidence            99986632      567888999999999998532       122222233445677665544

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.63  E-value=1.2e-07  Score=84.70  Aligned_cols=139  Identities=15%  Similarity=0.208  Sum_probs=91.8

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCC-------------Ccchh----HH
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD-------------IEDVD----TD  198 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~-------------~~~~~----~~  198 (319)
                      ++.+|+|+|+|.+|+.++++|+.+|+ .|+++++++++.+.++++|+..+. ++..             ..++.    ..
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLE-LDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECC-C--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEE-ecccccccccccchhhccHHHHHHHHHH
Confidence            57899999999999999999999999 799999999999988999876542 1110             01110    11


Q ss_pred             HHHhhhhcCCCccEEEEccCCh-----HH-HHHHHHhhcCCCEEEEeccc-CCcccccc--h-HHHhcCcEEEEeeccCC
Q 020928          199 VGKIQNAMGSGIDVSFDCVGFD-----KT-MSTALNATRPGGKVCLIGLA-KTEMTVAL--T-PAAAREVDVIGIFRYRS  268 (319)
Q Consensus       199 i~~~~~~~~~~~d~v~d~~g~~-----~~-~~~~~~~l~~~G~~v~~g~~-~~~~~~~~--~-~~~~~~~~i~~~~~~~~  268 (319)
                      +.++.    .++|+||++++.+     .. ....++.|++++.++.++.. +...+...  . .+..+++.+.+....+.
T Consensus       249 l~e~~----~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~~~p~  324 (401)
T 1x13_A          249 FAAQA----KEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPG  324 (401)
T ss_dssp             HHHHH----HHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCSCTGG
T ss_pred             HHHHh----CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeCCCcc
Confidence            22222    2689999995332     12 35788999999999999853 22222221  2 14567889988765533


Q ss_pred             CH-HHHHHHHHcC
Q 020928          269 TW-PLCIEFLRSG  280 (319)
Q Consensus       269 ~~-~~~~~~~~~g  280 (319)
                      .+ ..+.+++.++
T Consensus       325 ~~~~~a~~ll~~~  337 (401)
T 1x13_A          325 RLPTQSSQLYGTN  337 (401)
T ss_dssp             GSHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHh
Confidence            33 2344554443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.57  E-value=3e-07  Score=83.81  Aligned_cols=105  Identities=20%  Similarity=0.218  Sum_probs=84.0

Q ss_pred             hHHHHHHHHhc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHH
Q 020928          122 LSVGVHACRRA--NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDV  199 (319)
Q Consensus       122 ~~~a~~~l~~~--~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i  199 (319)
                      ..++|+++++.  ...+|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+.+.++++|++ +.+       +.+  
T Consensus       257 ~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~~-------l~e--  325 (494)
T 3ce6_A          257 RHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VVT-------VEE--  325 (494)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC-------HHH--
T ss_pred             hhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Eec-------HHH--
Confidence            34567777553  37899999999999999999999999999 899999999998888889975 221       111  


Q ss_pred             HHhhhhcCCCccEEEEccCChHHHH-HHHHhhcCCCEEEEecccC
Q 020928          200 GKIQNAMGSGIDVSFDCVGFDKTMS-TALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       200 ~~~~~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~~  243 (319)
                        +.    .+.|+|+++++....+. ..++.|+++|+++.+|...
T Consensus       326 --~l----~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          326 --AI----GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             --HG----GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             --HH----hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence              11    36899999999876555 7889999999999998654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.33  E-value=2.1e-06  Score=72.98  Aligned_cols=188  Identities=14%  Similarity=0.082  Sum_probs=105.9

Q ss_pred             eCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCCcccccCCCCCCcceeEEeecCC--ceEeCCCCCChhhhhc--
Q 020928           43 VGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAK--LCYKLPDNVSLEEGAM--  118 (319)
Q Consensus        43 ~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~--~~~~iP~~~~~~~aa~--  118 (319)
                      +|+....+++||+|+......+..+..+..|..-.+....+....-....|.+.+.++..  .+..-|....+.++..  
T Consensus        13 ~~~~~~~~~~gd~v~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~g~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~   92 (277)
T 1o54_A           13 VGKVADTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRR   92 (277)
T ss_dssp             CCCGGGCCCTTCEEEEEETTSCEEEEECCTTCEEEETTEEEEHHHHTTSCTTCEEECTTCCEEEEECCCHHHHHHTCCC-
T ss_pred             cccccCCCCCCCEEEEEECCCcEEEEEEcCCCEEecCCceEEHHHhcCCCCCcEEEEcCCcEEEEeCCCHHHHHhhcccc
Confidence            445556699999999864333333323333322111111110000001223344555544  3344454322222211  


Q ss_pred             --cchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHc----CC-CEeeccCC
Q 020928          119 --CEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL----GA-DETAKVST  190 (319)
Q Consensus       119 --~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~----g~-~~v~~~~~  190 (319)
                        ......+...+...+++++++||-.|+|. |..++.+++..+ ...+++++.+++..+.+++.    +. ..+.... 
T Consensus        93 ~~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~-  170 (277)
T 1o54_A           93 TQIVYPKDSSFIAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV-  170 (277)
T ss_dssp             CCCCCHHHHHHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC-
T ss_pred             CCccCHHHHHHHHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE-
Confidence              01112223445667899999999999888 888999999864 34899999999888877653    43 1221111 


Q ss_pred             CCcchhHHHHHhhhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          191 DIEDVDTDVGKIQNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       191 ~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                        .++.+.   +   ....+|+|+-....+ ..+..+.+.|+++|+++...
T Consensus       171 --~d~~~~---~---~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          171 --RDISEG---F---DEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             --CCGGGC---C---SCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             --CCHHHc---c---cCCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence              122111   1   134699998776654 57888999999999998764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.22  E-value=6.5e-06  Score=72.86  Aligned_cols=129  Identities=19%  Similarity=0.257  Sum_probs=84.8

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeec-------------cCC-CCcch-hHHHH
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK-------------VST-DIEDV-DTDVG  200 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~-------------~~~-~~~~~-~~~i~  200 (319)
                      ++.+|+|+|+|.+|+.++++|+.+|+ .|++.+.++++.+.++++|++.+..             |.. -.+++ ..+..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            57899999999999999999999999 7999999999999999998754321             100 00011 00111


Q ss_pred             HhhhhcCCCccEEEEccCChH------HHHHHHHhhcCCCEEEEeccc-CCcccc--cchHHHhcCcEEEEeecc
Q 020928          201 KIQNAMGSGIDVSFDCVGFDK------TMSTALNATRPGGKVCLIGLA-KTEMTV--ALTPAAAREVDVIGIFRY  266 (319)
Q Consensus       201 ~~~~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~G~~v~~g~~-~~~~~~--~~~~~~~~~~~i~~~~~~  266 (319)
                      .+.+ .-.+.|+||.|+..+.      .....++.|++++.++.++.. +.....  +...+..+++.+.+....
T Consensus       268 ~l~e-~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~nl  341 (405)
T 4dio_A          268 LVAE-HIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHLNV  341 (405)
T ss_dssp             HHHH-HHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEETTEEEEECSSG
T ss_pred             HHHH-HhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEECCEEEEEeCCC
Confidence            1111 1147999999964331      346888999999999998742 222111  111233567888877664

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.19  E-value=9.6e-06  Score=68.83  Aligned_cols=100  Identities=15%  Similarity=0.309  Sum_probs=74.1

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .++++++++||.+|+|+.|..++.+|+..|+ +|++++.+++..+.+++.    |.+.+-...   .+..    ++.   
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~---gDa~----~l~---  185 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVIT---GDET----VID---  185 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEE---SCGG----GGG---
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEE---Cchh----hCC---
Confidence            3788999999999999878888888988888 899999999988887763    542221111   1211    121   


Q ss_pred             CCCccEEEEccCCh---HHHHHHHHhhcCCCEEEEecc
Q 020928          207 GSGIDVSFDCVGFD---KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +..||+|+.+...+   ..++.+.+.|+|+|+++....
T Consensus       186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            46799998765543   578899999999999987653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.12  E-value=1.6e-06  Score=65.98  Aligned_cols=107  Identities=10%  Similarity=0.142  Sum_probs=74.2

Q ss_pred             hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCCEeeccCCCCcchhHHH
Q 020928          121 PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADETAKVSTDIEDVDTDV  199 (319)
Q Consensus       121 ~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i  199 (319)
                      +.++++.+++......+.+++|+|+|.+|...++.++..|++ |.+.++++++.+ +.++++.... .+.    +..+  
T Consensus         5 ~~sv~~~a~~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~~a~~~~~~~~-~~~----~~~~--   76 (144)
T 3oj0_A            5 KVSIPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRNIDHVRAFAEKYEYEYV-LIN----DIDS--   76 (144)
T ss_dssp             CCSHHHHHHHHHHHHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESCHHHHHHHHHHHTCEEE-ECS----CHHH--
T ss_pred             cccHHHHHHHHHHhccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCHHHHHHHHHHhCCceE-eec----CHHH--
Confidence            456677777665555599999999999999999988888985 888889888765 4566774321 211    2222  


Q ss_pred             HHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc
Q 020928          200 GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       200 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                        ..    .++|+|+.+++.+... .....+++++.++.++.+
T Consensus        77 --~~----~~~Divi~at~~~~~~-~~~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           77 --LI----KNNDVIITATSSKTPI-VEERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             --HH----HTCSEEEECSCCSSCS-BCGGGCCTTCEEEECCSS
T ss_pred             --Hh----cCCCEEEEeCCCCCcE-eeHHHcCCCCEEEEccCC
Confidence              11    2589999999975221 122567888888887754

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.08  E-value=1.1e-05  Score=68.04  Aligned_cols=94  Identities=19%  Similarity=0.153  Sum_probs=68.4

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +++.+||.+|+|. |..+..+++.. +. .+++++.+++..+.+++.+....+.. ....+       +. ...+.+|+|
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~d~~~-------~~-~~~~~fD~v  152 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCV-ASSHR-------LP-FSDTSMDAI  152 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEE-CCTTS-------CS-BCTTCEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEE-cchhh-------CC-CCCCceeEE
Confidence            6788999999988 99999999986 55 89999999999999888653321111 11011       10 013579999


Q ss_pred             EEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          214 FDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +.... ...+..+.+.|+++|+++...
T Consensus       153 ~~~~~-~~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          153 IRIYA-PCKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             EEESC-CCCHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCC-hhhHHHHHHhcCCCcEEEEEE
Confidence            96544 457899999999999998765

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.07  E-value=1.6e-05  Score=69.75  Aligned_cols=129  Identities=16%  Similarity=0.186  Sum_probs=84.4

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeec---------cCCC-Ccc-hhHHHHHhhh
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK---------VSTD-IED-VDTDVGKIQN  204 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~---------~~~~-~~~-~~~~i~~~~~  204 (319)
                      ++.+|+|+|+|.+|+.+++.++.+|+ .|++.++++++.+.++++|++.+..         |... .++ .......+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            67899999999999999999999999 7999999999999999998764321         0000 000 1111112222


Q ss_pred             hcCCCccEEEEccCChH------HHHHHHHhhcCCCEEEEecccCC-ccc--ccchHHHhcCcEEEEeecc
Q 020928          205 AMGSGIDVSFDCVGFDK------TMSTALNATRPGGKVCLIGLAKT-EMT--VALTPAAAREVDVIGIFRY  266 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~G~~v~~g~~~~-~~~--~~~~~~~~~~~~i~~~~~~  266 (319)
                       .-.+.|+||.++..+.      .....++.|++++.++.++.... ...  -+...+..+++.+.+....
T Consensus       262 -~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~~~~~~~gV~~~~v~nl  331 (381)
T 3p2y_A          262 -AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPGRTIVHHGVTITSPLNL  331 (381)
T ss_dssp             -HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTCEEEETTEEEECCSCT
T ss_pred             -HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCCCeEEECCEEEEeeCCC
Confidence             1257999999874331      24688999999999999874321 111  1111133456777766554

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.06  E-value=1.8e-05  Score=67.05  Aligned_cols=105  Identities=20%  Similarity=0.234  Sum_probs=72.7

Q ss_pred             HHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHc-----C--CCEeeccCCCCcchhHH
Q 020928          127 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL-----G--ADETAKVSTDIEDVDTD  198 (319)
Q Consensus       127 ~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~-----g--~~~v~~~~~~~~~~~~~  198 (319)
                      ..+...+++++++||.+|+| .|..++.+++..+ ...+++++.+++..+.+++.     |  ...+....   .|..+ 
T Consensus        90 ~i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~---~d~~~-  164 (280)
T 1i9g_A           90 QIVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV---SDLAD-  164 (280)
T ss_dssp             HHHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC---SCGGG-
T ss_pred             HHHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEE---CchHh-
Confidence            34456789999999999988 4888889998753 34899999999888877653     3  22221111   12111 


Q ss_pred             HHHhhhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          199 VGKIQNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       199 i~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                         .. .....+|+|+.....+ ..+..+.+.|+++|+++.+.
T Consensus       165 ---~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          165 ---SE-LPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             ---CC-CCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ---cC-CCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence               10 0135699998766654 57888999999999998764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.98  E-value=7.4e-05  Score=54.14  Aligned_cols=96  Identities=20%  Similarity=0.300  Sum_probs=64.4

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+.+|+|+|+|.+|..+++.+...|...|+++++++++.+.+...+..... .+..  + .+.+.+..    .++|+||+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~-~d~~--~-~~~~~~~~----~~~d~vi~   75 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQ-VDAK--D-EAGLAKAL----GGFDAVIS   75 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEE-CCTT--C-HHHHHHHT----TTCSEEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEE-ecCC--C-HHHHHHHH----cCCCEEEE
Confidence            356899999999999999999999933788999999888887766654322 1211  1 12333332    37999999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEe
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +++..........+...+..++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           76 AAPFFLTPIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEECC
T ss_pred             CCCchhhHHHHHHHHHhCCCEEEe
Confidence            998654444444455666665544

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.97  E-value=6.6e-05  Score=66.69  Aligned_cols=103  Identities=19%  Similarity=0.289  Sum_probs=77.2

Q ss_pred             HHHHHHh--cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHh
Q 020928          125 GVHACRR--ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       125 a~~~l~~--~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      .+.++.+  ...-.|++++|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|... .       +    +.++
T Consensus       206 ~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~v-~-------~----Leea  272 (435)
T 3gvp_A          206 ILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFRL-V-------K----LNEV  272 (435)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-C-------C----HHHH
T ss_pred             HHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCEe-c-------c----HHHH
Confidence            3555544  335689999999999999999999999999 7999998887766666666422 1       1    1122


Q ss_pred             hhhcCCCccEEEEccCChHHHH-HHHHhhcCCCEEEEecccCC
Q 020928          203 QNAMGSGIDVSFDCVGFDKTMS-TALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~  244 (319)
                          -...|+++.|.|....+. ..+..|++++.++.++....
T Consensus       273 ----l~~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          273 ----IRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             ----TTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred             ----HhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCc
Confidence                136899999988665554 78899999999999986554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.89  E-value=4.6e-05  Score=58.57  Aligned_cols=91  Identities=13%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ...++.+|+|+|+|.+|..+++.++..|. .|+++++++++.+.++ +.|...+ ..+..  + .+.+.+   ....++|
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~-~~d~~--~-~~~l~~---~~~~~ad   86 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTV-VGDAA--E-FETLKE---CGMEKAD   86 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEE-ESCTT--S-HHHHHT---TTGGGCS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEE-EecCC--C-HHHHHH---cCcccCC
Confidence            34677899999999999999999999998 7889999888877666 5565432 21111  1 112221   1134699


Q ss_pred             EEEEccCChHHHHHHHHhhc
Q 020928          212 VSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       212 ~v~d~~g~~~~~~~~~~~l~  231 (319)
                      +||.+++.+.....+...++
T Consensus        87 ~Vi~~~~~~~~~~~~~~~~~  106 (155)
T 2g1u_A           87 MVFAFTNDDSTNFFISMNAR  106 (155)
T ss_dssp             EEEECSSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHH
Confidence            99999998755555545444

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.82  E-value=0.00029  Score=60.11  Aligned_cols=111  Identities=14%  Similarity=0.181  Sum_probs=78.0

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      -.+++++|+|.|.+|..+++.++.+|+ +|++.+++.++.+.++++|+..+ .+    .    .+.++    -...|+|+
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-~~----~----~l~~~----l~~aDvVi  218 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEPF-HI----S----KAAQE----LRDVDVCI  218 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEEE-EG----G----GHHHH----TTTCSEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCeec-Ch----h----hHHHH----hcCCCEEE
Confidence            468899999999999999999999999 89999999888777777776432 11    1    12222    13689999


Q ss_pred             EccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEE
Q 020928          215 DCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVI  261 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~  261 (319)
                      .++...-.-...++.+++++.++.++..+....+  ......++.+.
T Consensus       219 ~~~p~~~i~~~~l~~mk~~~~lin~ar~~~~~~~--~~a~~~Gv~~~  263 (293)
T 3d4o_A          219 NTIPALVVTANVLAEMPSHTFVIDLASKPGGTDF--RYAEKRGIKAL  263 (293)
T ss_dssp             ECCSSCCBCHHHHHHSCTTCEEEECSSTTCSBCH--HHHHHHTCEEE
T ss_pred             ECCChHHhCHHHHHhcCCCCEEEEecCCCCCCCH--HHHHHCCCEEE
Confidence            9987542224567889999999999864433333  33333455554

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.72  E-value=8.8e-05  Score=64.70  Aligned_cols=108  Identities=19%  Similarity=0.215  Sum_probs=69.7

Q ss_pred             HHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHHcCC---------------CEeeccC
Q 020928          126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNLGA---------------DETAKVS  189 (319)
Q Consensus       126 ~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~~g~---------------~~v~~~~  189 (319)
                      ...+....++++++||-+|+|. |..++.+++..|. ..|++++.++...+.+++...               ..+....
T Consensus        95 ~~~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           95 NMILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            3345556789999999999887 8888889988764 489999999988877765211               1111111


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .   +..+....+   ....+|+|+-....+ ..+..+.+.|+++|+++.+.
T Consensus       174 ~---d~~~~~~~~---~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          174 K---DISGATEDI---KSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             S---CTTCCC----------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             C---ChHHccccc---CCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            1   111111111   124699988665544 35788899999999998664

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.70  E-value=0.00086  Score=53.88  Aligned_cols=104  Identities=14%  Similarity=0.108  Sum_probs=72.1

Q ss_pred             HHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHH
Q 020928          127 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       127 ~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~  201 (319)
                      ..+....++++++||-+|+|. |..++.+++. +. +|++++.+++..+.+++    .+.. .+..+..   +..+.+  
T Consensus        46 ~~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~~~~--  117 (204)
T 3njr_A           46 LTLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQG---TAPAAL--  117 (204)
T ss_dssp             HHHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES---CTTGGG--
T ss_pred             HHHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeC---chhhhc--
Confidence            345667889999999999887 8888999988 66 89999999998877665    3543 2211111   211111  


Q ss_pred             hhhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEEEEecc
Q 020928          202 IQNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~  241 (319)
                       .  ....+|+|+...+.. ..+..+.+.|+++|+++....
T Consensus       118 -~--~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          118 -A--DLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             -T--TSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             -c--cCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEec
Confidence             1  124699998765433 267888999999999987643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.69  E-value=0.00055  Score=60.99  Aligned_cols=102  Identities=20%  Similarity=0.186  Sum_probs=75.0

Q ss_pred             HHHHHh--cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhh
Q 020928          126 VHACRR--ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       126 ~~~l~~--~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      +.++.+  ...-.|++++|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|... .       ++    .++.
T Consensus       234 vdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~v-v-------~L----eElL  300 (464)
T 3n58_A          234 VDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFEV-V-------TL----DDAA  300 (464)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEE-C-------CH----HHHG
T ss_pred             HHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCcee-c-------cH----HHHH
Confidence            444433  345688999999999999999999999999 7999988887665555556432 1       11    1121


Q ss_pred             hhcCCCccEEEEccCChHHH-HHHHHhhcCCCEEEEecccCC
Q 020928          204 NAMGSGIDVSFDCVGFDKTM-STALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~  244 (319)
                          ...|+|+.+.+....+ ...+..|++++.++.+|....
T Consensus       301 ----~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgdv  338 (464)
T 3n58_A          301 ----STADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDN  338 (464)
T ss_dssp             ----GGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSSTT
T ss_pred             ----hhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCCc
Confidence                2589999998875443 578899999999999986543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.69  E-value=8e-05  Score=62.13  Aligned_cols=104  Identities=20%  Similarity=0.270  Sum_probs=73.8

Q ss_pred             HHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHc----CCCE-eeccCCCCcchhHHHH
Q 020928          127 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL----GADE-TAKVSTDIEDVDTDVG  200 (319)
Q Consensus       127 ~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~----g~~~-v~~~~~~~~~~~~~i~  200 (319)
                      ..+...+++++++||-.|+|. |..++.+++..+ ..++++++.+++..+.+++.    |... +....   .|+.+.  
T Consensus        84 ~i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~--  157 (255)
T 3mb5_A           84 LIVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL---KDIYEG--  157 (255)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC---SCGGGC--
T ss_pred             HHHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEE---Cchhhc--
Confidence            344567899999999999887 889999999853 34899999999888777653    4332 21111   122111  


Q ss_pred             HhhhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          201 KIQNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       201 ~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                       +   ....+|+|+-....+ ..+..+.+.|+++|+++.+.
T Consensus       158 -~---~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          158 -I---EEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             -C---CCCSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             -c---CCCCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence             1   234699999877664 37889999999999998764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.66  E-value=0.00053  Score=58.73  Aligned_cols=111  Identities=14%  Similarity=0.172  Sum_probs=77.8

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      -.+.+++|+|+|.+|..+++.++.+|+ +|++.+++.++.+.++++|... +.+    .    .+.++    -.+.|+|+
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~-~~~----~----~l~~~----l~~aDvVi  220 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLVP-FHT----D----ELKEH----VKDIDICI  220 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCEE-EEG----G----GHHHH----STTCSEEE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCeE-Ech----h----hHHHH----hhCCCEEE
Confidence            467899999999999999999999999 7999999988877676777532 211    1    12222    24689999


Q ss_pred             EccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEE
Q 020928          215 DCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVI  261 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~  261 (319)
                      .+++..-.-...++.+++++.++.++..+....+  .....+++.+.
T Consensus       221 ~~~p~~~i~~~~~~~mk~g~~lin~a~g~~~~~~--~~a~~~G~~~i  265 (300)
T 2rir_A          221 NTIPSMILNQTVLSSMTPKTLILDLASRPGGTDF--KYAEKQGIKAL  265 (300)
T ss_dssp             ECCSSCCBCHHHHTTSCTTCEEEECSSTTCSBCH--HHHHHHTCEEE
T ss_pred             ECCChhhhCHHHHHhCCCCCEEEEEeCCCCCcCH--HHHHHCCCEEE
Confidence            9998642224567789999999999864443333  33334455554

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.65  E-value=0.0012  Score=49.59  Aligned_cols=96  Identities=10%  Similarity=0.039  Sum_probs=67.3

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      -.++++|+|.|.+|..+++.++..|. .|++++.++++.+.+++.|...+. -+..+++   .+.+.   .-.++|.++-
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~-gd~~~~~---~l~~a---~i~~ad~vi~   77 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVL-GNAANEE---IMQLA---HLECAKWLIL   77 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEE-SCTTSHH---HHHHT---TGGGCSEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEE-CCCCCHH---HHHhc---CcccCCEEEE
Confidence            35689999999999999999999998 799999999999999888765432 2222222   22221   2347899999


Q ss_pred             ccCChHHH---HHHHHhhcCCCEEEEe
Q 020928          216 CVGFDKTM---STALNATRPGGKVCLI  239 (319)
Q Consensus       216 ~~g~~~~~---~~~~~~l~~~G~~v~~  239 (319)
                      +++.+...   -...+.+.+..+++.-
T Consensus        78 ~~~~~~~n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           78 TIPNGYEAGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             CCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             ECCChHHHHHHHHHHHHHCCCCeEEEE
Confidence            99976422   2344556666666543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.60  E-value=0.00081  Score=52.94  Aligned_cols=96  Identities=18%  Similarity=0.176  Sum_probs=65.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      +++++|+|.|.+|..+++.++.. |. .|+++++++++.+.+++.|...+.- +..+.   +.+.+..  .-.++|+||.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~g-d~~~~---~~l~~~~--~~~~ad~vi~  111 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISG-DATDP---DFWERIL--DTGHVKLVLL  111 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEEC-CTTCH---HHHHTBC--SCCCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEc-CCCCH---HHHHhcc--CCCCCCEEEE
Confidence            66899999999999999999988 98 6889999999998888888654321 22111   1222210  2347999999


Q ss_pred             ccCChHHHHHHH---HhhcCCCEEEEe
Q 020928          216 CVGFDKTMSTAL---NATRPGGKVCLI  239 (319)
Q Consensus       216 ~~g~~~~~~~~~---~~l~~~G~~v~~  239 (319)
                      ++++......+.   +.+.+..+++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          112 AMPHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             eCCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            999764433333   344445566543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.60  E-value=0.0002  Score=64.81  Aligned_cols=91  Identities=21%  Similarity=0.252  Sum_probs=70.2

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      -.|++++|+|+|.+|..+++.++..|+ +|+++++++.+.+.+...+.+. .+.           .+.    -..+|+++
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~dv-~~l-----------ee~----~~~aDvVi  325 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQV-LTL-----------EDV----VSEADIFV  325 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-CCG-----------GGT----TTTCSEEE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCcc-CCH-----------HHH----HHhcCEEE
Confidence            478999999999999999999999999 7888999888877776666532 110           111    24689999


Q ss_pred             EccCChHHH-HHHHHhhcCCCEEEEeccc
Q 020928          215 DCVGFDKTM-STALNATRPGGKVCLIGLA  242 (319)
Q Consensus       215 d~~g~~~~~-~~~~~~l~~~G~~v~~g~~  242 (319)
                      ++.|....+ ...++.+++++.++..|..
T Consensus       326 ~atG~~~vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          326 TTTGNKDIIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             ECSSCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred             eCCCChhhhhHHHHHhcCCCeEEEEcCCC
Confidence            999876544 3478889999999988864

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.59  E-value=0.00096  Score=53.42  Aligned_cols=105  Identities=14%  Similarity=0.134  Sum_probs=72.9

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhh
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      .+...+++++++||-+|+|. |..++.+++.....++++++.+++..+.+++    .+.+.+.....   +..+.+   .
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~---~  104 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEA---FAPEGL---D  104 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEEC---CTTTTC---T
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeC---Chhhhh---h
Confidence            44667889999999999886 8899999998644589999999998887765    34322211111   111111   1


Q ss_pred             hhcCCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEecc
Q 020928          204 NAMGSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                        ....+|+|+.....   ...+..+.+.|+++|+++....
T Consensus       105 --~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          105 --DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             --TSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             --cCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence              12469999976542   3577889999999999987643

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.51  E-value=0.00084  Score=56.47  Aligned_cols=104  Identities=26%  Similarity=0.329  Sum_probs=71.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HHHcCCCEe-eccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGADET-AKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +|+.+||+| ++++|.++.+.+...|+ +|+.+++++++.+. +++++.... +..+ .+.++....+.++.+.. +++|
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~iD  105 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEA-GRID  105 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH-SCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            578899998 59999999999999999 78888888887654 455664322 2112 22233344444444433 4799


Q ss_pred             EEEEccCCh----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          212 VSFDCVGFD----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +++++.|..          +               ..+..++.|+.+|+++.+++
T Consensus       106 iLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS  160 (273)
T 4fgs_A          106 VLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS  160 (273)
T ss_dssp             EEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred             EEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence            999999863          1               24555667788899998874

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.43  E-value=0.0012  Score=51.41  Aligned_cols=105  Identities=16%  Similarity=0.227  Sum_probs=72.5

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHh
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~  202 (319)
                      .+....++++++||.+|+|. |..++.+++..+...+++++.+++..+.+++    .+.. .+ .+..   +....   +
T Consensus        17 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~---d~~~~---~   88 (178)
T 3hm2_A           17 AISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQ---GAPRA---F   88 (178)
T ss_dssp             HHHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEEC---CTTGG---G
T ss_pred             HHHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEec---chHhh---h
Confidence            34556788999999999987 8899999998744489999999988887765    3443 22 2211   11111   1


Q ss_pred             hhhcCCCccEEEEccCCh--HHHHHHHHhhcCCCEEEEecc
Q 020928          203 QNAMGSGIDVSFDCVGFD--KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~--~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .. ....+|+|+......  ..+..+.+.|+++|+++....
T Consensus        89 ~~-~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           89 DD-VPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             GG-CCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred             hc-cCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEee
Confidence            11 125799999655432  378899999999999987653

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.42  E-value=0.0003  Score=57.91  Aligned_cols=105  Identities=17%  Similarity=0.205  Sum_probs=71.9

Q ss_pred             HHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHH
Q 020928          126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       126 ~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~  201 (319)
                      ...++...++++++||.+|+| .|..++.+++..+ .+|++++.+++..+.+++    .+...+... .  .+...   .
T Consensus        81 ~~~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~-~--~d~~~---~  152 (235)
T 1jg1_A           81 AIMLEIANLKPGMNILEVGTG-SGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVI-L--GDGSK---G  152 (235)
T ss_dssp             HHHHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEE-E--SCGGG---C
T ss_pred             HHHHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE-E--CCccc---C
Confidence            334555678999999999998 5889999999887 489999999988777765    343222111 1  12111   1


Q ss_pred             hhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +.  ....+|+|+.+..-......+.+.|+++|+++..-
T Consensus       153 ~~--~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          153 FP--PKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             CG--GGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CC--CCCCccEEEECCcHHHHHHHHHHhcCCCcEEEEEE
Confidence            11  13359999977665545567889999999987653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.41  E-value=0.00039  Score=55.96  Aligned_cols=102  Identities=16%  Similarity=0.118  Sum_probs=69.9

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhh
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      .++...++++++||-+|+|. |..+..+++. +. .|++++.+++..+.+++    .+...+....   .+....   ..
T Consensus        69 ~~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~---~d~~~~---~~  139 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRH---GDGWQG---WQ  139 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---SCGGGC---CG
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEE---CCcccC---Cc
Confidence            44567789999999999885 8888888888 55 89999999988877765    2433221111   111111   11


Q ss_pred             hhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                        ....+|+|+....-......+.+.|+++|+++..-
T Consensus       140 --~~~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~  174 (210)
T 3lbf_A          140 --ARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPV  174 (210)
T ss_dssp             --GGCCEEEEEESSBCSSCCTHHHHTEEEEEEEEEEE
T ss_pred             --cCCCccEEEEccchhhhhHHHHHhcccCcEEEEEE
Confidence              13579999986554444567889999999987653

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.33  E-value=0.0028  Score=53.02  Aligned_cols=104  Identities=18%  Similarity=0.265  Sum_probs=63.7

Q ss_pred             CCCeEEEEC-CCH--HHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCC--CEeeccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGP--IGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGA--DETAKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~--vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~--~~v~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      .++++||+| +|.  +|.++++.+...|+ +|+.++++++..+.+++    .+.  ...+..+ .+.++....+.++.+.
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            467899998 555  99998888888899 67777777654444433    332  1222222 2233444444444433


Q ss_pred             cCCCccEEEEccCCh--------------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          206 MGSGIDVSFDCVGFD--------------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      . +.+|+++++.|..              +               ..+.+.+.++++|+++.++.
T Consensus        85 ~-g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           85 V-GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             H-SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             h-CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence            2 4799999998742              0               22344456667899998875

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.32  E-value=0.0056  Score=50.61  Aligned_cols=103  Identities=16%  Similarity=0.126  Sum_probs=67.4

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCE-eeccC-CCCcchhHHHHHhhhhcCCCccEE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      ++++||+| ++++|.++.+.+...|+ +|+.+++++++.+.+.+.+... .+..+ ++.++....+.+..+.. +++|++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~-g~iDiL   79 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKL-QRIDVL   79 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            36899998 69999999998889999 7888889888777665544322 12112 22233334444444433 479999


Q ss_pred             EEccCCh----------H---------------HHHHHHHhh-cCCCEEEEecc
Q 020928          214 FDCVGFD----------K---------------TMSTALNAT-RPGGKVCLIGL  241 (319)
Q Consensus       214 ~d~~g~~----------~---------------~~~~~~~~l-~~~G~~v~~g~  241 (319)
                      +++.|..          +               ..+.+.+.| +.+|+++.+++
T Consensus        80 VNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS  133 (247)
T 3ged_A           80 VNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIAS  133 (247)
T ss_dssp             EECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEee
Confidence            9999752          1               233444454 56799998875

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.30  E-value=0.0022  Score=47.96  Aligned_cols=77  Identities=14%  Similarity=0.189  Sum_probs=56.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      ..+++|+|+|.+|..+++.+...|. .|+++++++++.+.+++.+...+ ..+..+++   .+.+.   .-.++|.+|.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~-~gd~~~~~---~l~~~---~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAV-IADPTDES---FYRSL---DLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEE-ECCTTCHH---HHHHS---CCTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEE-ECCCCCHH---HHHhC---CcccCCEEEEe
Confidence            4689999999999999999999998 68899999999888888775432 22222222   22222   23579999999


Q ss_pred             cCChH
Q 020928          217 VGFDK  221 (319)
Q Consensus       217 ~g~~~  221 (319)
                      ++..+
T Consensus        78 ~~~~~   82 (141)
T 3llv_A           78 GSDDE   82 (141)
T ss_dssp             CSCHH
T ss_pred             cCCHH
Confidence            99753

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.30  E-value=0.0019  Score=53.83  Aligned_cols=104  Identities=16%  Similarity=0.272  Sum_probs=65.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCE-eeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADE-TAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+. +++... .+..+- +.++....+.++.+. .+++|
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~id   84 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQT-LGAID   84 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHH-HSSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHH-hCCCC
Confidence            578999998 69999999998888899 7888888887765544 344222 121121 222333333333332 24799


Q ss_pred             EEEEccCCh----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          212 VSFDCVGFD----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +++++.|..          +               ..+.+.+.++.+|+++.+++
T Consensus        85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           85 LLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence            999998752          1               12334445566799998875

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.28  E-value=0.0012  Score=54.87  Aligned_cols=105  Identities=17%  Similarity=0.135  Sum_probs=74.1

Q ss_pred             HHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHc-----CCCEeeccCCCCcchhHHHH
Q 020928          127 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL-----GADETAKVSTDIEDVDTDVG  200 (319)
Q Consensus       127 ~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~-----g~~~v~~~~~~~~~~~~~i~  200 (319)
                      ..+....++++++||..|+|. |..++.+++..+ ...+++++.+++..+.+++.     |...+....   .++.+.  
T Consensus        87 ~~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~---~d~~~~--  160 (258)
T 2pwy_A           87 AMVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHL---GKLEEA--  160 (258)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEE---SCGGGC--
T ss_pred             HHHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEE---Cchhhc--
Confidence            345667889999999999886 889999999854 34899999999988887764     532221111   121111  


Q ss_pred             HhhhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          201 KIQNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       201 ~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+   ....+|+|+.....+ ..+..+.+.|+++|+++.+.
T Consensus       161 ~~---~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          161 EL---EEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             CC---CTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CC---CCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            01   134699998766654 57888999999999998765

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.23  E-value=0.0064  Score=50.52  Aligned_cols=104  Identities=22%  Similarity=0.370  Sum_probs=67.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEe-eccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADET-AKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      +|+++||+| ++++|.+..+.+...|+ +|+.+++++++.+.+    ++.|.... +..+ ++.++....+.++.+. .+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~-~G   85 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAE-GI   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHT-TC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH-CC
Confidence            578889998 69999999999999999 788888887765432    33343222 1111 2223334444444443 35


Q ss_pred             CccEEEEccCCh-------------------------HHHHHHHHhh---cCCCEEEEecc
Q 020928          209 GIDVSFDCVGFD-------------------------KTMSTALNAT---RPGGKVCLIGL  241 (319)
Q Consensus       209 ~~d~v~d~~g~~-------------------------~~~~~~~~~l---~~~G~~v~~g~  241 (319)
                      ++|+++++.|..                         ...+..++.|   ..+|+++.+++
T Consensus        86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS  146 (255)
T 4g81_D           86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGS  146 (255)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEee
Confidence            799999999863                         0235566666   35689999875

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.22  E-value=0.0025  Score=56.72  Aligned_cols=100  Identities=24%  Similarity=0.302  Sum_probs=72.8

Q ss_pred             HHHHHh--cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhh
Q 020928          126 VHACRR--ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       126 ~~~l~~--~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      +.++.+  ...-.|.+|+|+|.|.+|..+++.++.+|+ +|++.++++.+...+...|....        +    +.++.
T Consensus       198 ldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~~--------s----L~eal  264 (436)
T 3h9u_A          198 VDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQVL--------L----VEDVV  264 (436)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC--------C----HHHHT
T ss_pred             HHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCeec--------C----HHHHH
Confidence            444433  334468999999999999999999999999 79999998887766666665321        1    22222


Q ss_pred             hhcCCCccEEEEccCChHHHH-HHHHhhcCCCEEEEeccc
Q 020928          204 NAMGSGIDVSFDCVGFDKTMS-TALNATRPGGKVCLIGLA  242 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~  242 (319)
                          ...|+++.+.+....+. ..++.|+++..++.++..
T Consensus       265 ----~~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgRg  300 (436)
T 3h9u_A          265 ----EEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHF  300 (436)
T ss_dssp             ----TTCSEEEECSSCSCSBCTTTGGGCCTTEEEEECSSS
T ss_pred             ----hhCCEEEECCCCcCccCHHHHhhcCCCcEEEEeCCC
Confidence                35899998887653333 567888999999888754

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.22  E-value=0.0046  Score=52.58  Aligned_cols=105  Identities=19%  Similarity=0.227  Sum_probs=65.9

Q ss_pred             CCCCeEEEEC-CCH--HHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEeeccCC-CCcchhHHHHHhhhhc
Q 020928          135 GPETNVMIMG-SGP--IGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       135 ~~~~~vlI~G-~g~--vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      -.++++||+| +|.  +|.++++.+...|+ +|+.++++++..+.++    +.+....+..+- +.++....+.++.+..
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            4578999998 455  99999998888898 6777777765444333    334322222222 2223333444444333


Q ss_pred             CCCccEEEEccCChH-----------------------------HHHHHHHhhcCCCEEEEecc
Q 020928          207 GSGIDVSFDCVGFDK-----------------------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                       +++|++|++.|...                             ..+.+.+.+..+|+++.++.
T Consensus       108 -g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          108 -GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             -SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             -CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence             47999999988420                             23455567778899998875

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.22  E-value=0.00087  Score=54.10  Aligned_cols=105  Identities=16%  Similarity=0.196  Sum_probs=71.7

Q ss_pred             HHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHH
Q 020928          127 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       127 ~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~  201 (319)
                      ..++...++++++||.+|+|. |..+..+++..|. ..+++++.+++..+.+++.    +...+....   .+....   
T Consensus        68 ~~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~---~d~~~~---  140 (215)
T 2yxe_A           68 MMCELLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIV---GDGTLG---  140 (215)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEE---SCGGGC---
T ss_pred             HHHHhhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE---CCcccC---
Confidence            344567789999999999885 8899999998762 3899999999887777653    332221111   111111   


Q ss_pred             hhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +.  ....+|+|+.+..-......+.+.|+++|+++..-
T Consensus       141 ~~--~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          141 YE--PLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             CG--GGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CC--CCCCeeEEEECCchHHHHHHHHHHcCCCcEEEEEE
Confidence            11  13469999987665545568889999999988664

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.20  E-value=0.0012  Score=52.82  Aligned_cols=135  Identities=14%  Similarity=0.217  Sum_probs=79.0

Q ss_pred             cceeEEe-ecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928           92 SLAHKVV-HPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus        92 ~~~e~~~-~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      .|.+|.. .+....+.+++++++..+.. +........+. ..++++.+||-+|+|. |..++.+++ .+...+++++.+
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~l~-~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD~s   92 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-QTTQLAMLGIE-RAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATDIS   92 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH-HHHHHHHHHHH-HHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEESC
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC-ccHHHHHHHHH-HhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEECC
Confidence            4566666 66677788888877655421 11111122222 2267889999999877 777777776 465689999999


Q ss_pred             hhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCCh---HHHHHHHHhhcCCCEEEEec
Q 020928          171 VQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD---KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       171 ~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ++..+.+++.    +...+.....   +...       .....+|+|+....-.   ..+..+.+.|+++|+++...
T Consensus        93 ~~~~~~a~~~~~~~~~~~v~~~~~---d~~~-------~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  159 (205)
T 3grz_A           93 DESMTAAEENAALNGIYDIALQKT---SLLA-------DVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSG  159 (205)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEEEES---STTT-------TCCSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCceEEEec---cccc-------cCCCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            9887777652    4322111111   1111       1235799998765432   12445556789999988754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.13  E-value=0.0015  Score=48.90  Aligned_cols=76  Identities=8%  Similarity=0.240  Sum_probs=52.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +++++|+|+|.+|..+++.+...|. .|+++++++++.+.+++.+... +..+..  + .+.+.+.   .-.++|+++.+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~~-~~~d~~--~-~~~l~~~---~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHA-VIANAT--E-ENELLSL---GIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSEE-EECCTT--C-HHHHHTT---TGGGCSEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCEE-EEeCCC--C-HHHHHhc---CCCCCCEEEEC
Confidence            5679999999999999999999998 5778888887776665555432 221111  1 1222221   12469999999


Q ss_pred             cCCh
Q 020928          217 VGFD  220 (319)
Q Consensus       217 ~g~~  220 (319)
                      ++.+
T Consensus        78 ~~~~   81 (144)
T 2hmt_A           78 IGAN   81 (144)
T ss_dssp             CCSC
T ss_pred             CCCc
Confidence            9974

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.13  E-value=0.0067  Score=50.49  Aligned_cols=82  Identities=18%  Similarity=0.278  Sum_probs=52.4

Q ss_pred             CCCeEEEECC-C--HHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEe--eccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADET--AKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G~-g--~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v--~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      +|+++||+|+ |  ++|.++.+.+...|+ +|+.++++++..+.+.    +++...+  +..+ ++.++....+.++.+.
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5789999985 4  799999998888999 6888888776554433    3343222  2112 2223333444444433


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +.+|+++++.|.
T Consensus        84 ~-G~iD~lvnnAg~   96 (256)
T 4fs3_A           84 V-GNIDGVYHSIAF   96 (256)
T ss_dssp             H-CCCSEEEECCCC
T ss_pred             h-CCCCEEEecccc
Confidence            3 479999999874

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.11  E-value=0.0021  Score=50.96  Aligned_cols=101  Identities=18%  Similarity=0.206  Sum_probs=62.6

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCC---------CeEEEecCChhHHHHHHHcCCCEee-ccCCCCcchhHHHHH
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGA---------PRIIITDVDVQRLSIARNLGADETA-KVSTDIEDVDTDVGK  201 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~---------~~vv~v~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~i~~  201 (319)
                      ..++++++||.+|+|+ |..++.+++..+.         ..|++++.++...     ......+ .-+-...+....+..
T Consensus        18 ~~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~~~~~~~~~~~~   91 (196)
T 2nyu_A           18 QILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADVTDPRTSQRILE   91 (196)
T ss_dssp             CCCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCTTSHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEEEeccCCCHHHHHHHHH
Confidence            4478999999999988 9999999999874         4899999887421     1111112 111111111111111


Q ss_pred             hhhhcCCCccEEEE-----ccCCh------------HHHHHHHHhhcCCCEEEEec
Q 020928          202 IQNAMGSGIDVSFD-----CVGFD------------KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       202 ~~~~~~~~~d~v~d-----~~g~~------------~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..  .+..+|+|+.     +.+..            ..+..+.+.|+++|+++...
T Consensus        92 ~~--~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           92 VL--PGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HS--GGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hc--CCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            11  2347999994     33321            35677888999999998764

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.10  E-value=0.0049  Score=53.65  Aligned_cols=104  Identities=20%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC---CCcch--hHHHH-Hhhh--hc
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST---DIEDV--DTDVG-KIQN--AM  206 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~---~~~~~--~~~i~-~~~~--~~  206 (319)
                      -+|++|.|.|.|.+|+.+++.++.+|+ +|++.+.++.+.++.+++++..+ ....   ...|+  ..... .+..  ..
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh
Confidence            578999999999999999999999999 77788888777667777776433 1000   00011  00000 0000  00


Q ss_pred             CCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .-+.++|+++.+++-......+.|..+|.++..+
T Consensus       251 ~lk~~iVie~AN~p~t~~eA~~~L~~~gIlv~Pd  284 (355)
T 1c1d_A          251 TLDCSVVAGAANNVIADEAASDILHARGILYAPD  284 (355)
T ss_dssp             HCCCSEECCSCTTCBCSHHHHHHHHHTTCEECCH
T ss_pred             hCCCCEEEECCCCCCCCHHHHHHHHhCCEEEECC
Confidence            1246788887777622235567777777666443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.08  E-value=0.0022  Score=55.32  Aligned_cols=104  Identities=21%  Similarity=0.250  Sum_probs=70.6

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHh
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      .++...++++++||-+|+|. |..++.+++..+. .+|++++.+++..+.+++.    |...+....   .|..+.   +
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~---~d~~~~---~  139 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC---GDGYYG---V  139 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---SCGGGC---C
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEE---CChhhc---c
Confidence            44567889999999999887 8888888887542 3699999999888777653    433221111   121111   1


Q ss_pred             hhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .  ....+|+|+....-....+.+.+.|+++|+++..-
T Consensus       140 ~--~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          140 P--EFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             G--GGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEB
T ss_pred             c--cCCCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            1  13479999877655444567888999999987653

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.07  E-value=0.0078  Score=50.19  Aligned_cols=81  Identities=17%  Similarity=0.178  Sum_probs=51.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH-HHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~-~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++ .+.+++.+... +..+ .+.++....+.++.+. .+++|+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~Dv~~~~~v~~~~~~~~~~-~g~iD~  102 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVA-LYGDFSCETGIMAFIDLLKTQ-TSSLRA  102 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEE-EECCTTSHHHHHHHHHHHHHH-CSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeE-EECCCCCHHHHHHHHHHHHHh-cCCCCE
Confidence            357899998 69999999998888899 57777666544 44555556432 2222 2222333344444433 347999


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      ++++.|.
T Consensus       103 lv~nAg~  109 (260)
T 3gem_A          103 VVHNASE  109 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.07  E-value=0.0051  Score=52.40  Aligned_cols=82  Identities=21%  Similarity=0.236  Sum_probs=52.3

Q ss_pred             CCCeEEEECC-C--HHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEeeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~-g--~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+|+ |  ++|.++++.+...|+ +|+.++++++..+.++    +.+....+..+- +.++....+.++.+.. 
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  106 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEW-  106 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            5689999985 5  999999988888899 6888878765444333    334333332222 2233334444444333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus       107 g~iD~lVnnAG~  118 (296)
T 3k31_A          107 GSLDFVVHAVAF  118 (296)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999984

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.05  E-value=0.014  Score=48.63  Aligned_cols=83  Identities=19%  Similarity=0.274  Sum_probs=52.6

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCE-eeccCC-CCcchhHHHHHhhhhcC
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADE-TAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      -.++++||+| +|++|..++..+...|+ +|+.+++++++.+.+.    +.+... .+..+- +.++....+..+.+.. 
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-  104 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH-  104 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc-
Confidence            3568899998 69999999988888898 6888888887655432    223221 121221 2223333344443333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +.+|++|++.|.
T Consensus       105 g~id~lv~~Ag~  116 (262)
T 3rkr_A          105 GRCDVLVNNAGV  116 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999985

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.03  E-value=0.013  Score=48.90  Aligned_cols=82  Identities=17%  Similarity=0.221  Sum_probs=52.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCC-EeeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|++|.++++.+...|+ .|+.+++++++.+.+ ++++.. ..+..+ .+.++....+.++.+.. +.+|
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~iD   82 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEF-GRLH   82 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHc-CCCc
Confidence            467899998 59999999998888898 788888888766544 334321 112112 12223333333333322 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|++.|.
T Consensus        83 ~lvnnAg~   90 (263)
T 2a4k_A           83 GVAHFAGV   90 (263)
T ss_dssp             EEEEGGGG
T ss_pred             EEEECCCC
Confidence            99999874

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.02  E-value=0.0057  Score=52.53  Aligned_cols=100  Identities=13%  Similarity=0.232  Sum_probs=70.3

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      +...++++.+||-+|+|. |..+..+++..|. .|++++.+++..+.+++.    +....+.+..  .+.    ..+   
T Consensus        84 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~----~~~---  152 (318)
T 2fk8_A           84 DKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL--QGW----EDF---  152 (318)
T ss_dssp             TTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE--SCG----GGC---
T ss_pred             HhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE--CCh----HHC---
Confidence            446788999999999887 8888999988787 899999999988877763    3221111111  111    111   


Q ss_pred             cCCCccEEEEc-----cCC---hHHHHHHHHhhcCCCEEEEecc
Q 020928          206 MGSGIDVSFDC-----VGF---DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       206 ~~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                       ...+|+|+..     ++.   ...+..+.+.|+++|+++....
T Consensus       153 -~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          153 -AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             -CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             -CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence             2579999876     432   2467788899999999987653

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.01  E-value=0.015  Score=48.90  Aligned_cols=82  Identities=21%  Similarity=0.332  Sum_probs=53.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEe-eccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADET-AKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+ ++++.... +..+ .+.++....+.++.+.. +++|
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD  103 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKW-GRVD  103 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            467899998 69999999998888999 788888887765544 44553321 2122 22223333344443332 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|++.|.
T Consensus       104 ~lv~nAg~  111 (277)
T 4dqx_A          104 VLVNNAGF  111 (277)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999984

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.97  E-value=0.00045  Score=56.92  Aligned_cols=102  Identities=15%  Similarity=0.102  Sum_probs=66.2

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      ..+|.+||-+|+|. |..+..+++..+. .+++++.+++-.+.+++.....-....-...++......+   ....||.|
T Consensus        58 ~~~G~rVLdiG~G~-G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~FD~i  132 (236)
T 3orh_A           58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL---PDGHFDGI  132 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS---CTTCEEEE
T ss_pred             ccCCCeEEEECCCc-cHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc---cccCCceE
Confidence            57889999999886 8888888887665 7899999999988888743211000000011222222111   24568887


Q ss_pred             -EEccCCh----------HHHHHHHHhhcCCCEEEEec
Q 020928          214 -FDCVGFD----------KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       214 -~d~~g~~----------~~~~~~~~~l~~~G~~v~~g  240 (319)
                       +|++...          ..+.++.+.|+|+|+++.+.
T Consensus       133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence             5655431          34677889999999998765

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.97  E-value=0.009  Score=49.99  Aligned_cols=82  Identities=22%  Similarity=0.319  Sum_probs=53.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HHHcCCCEe-eccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGADET-AKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+. .++++.... +..+ .+.++....+.++.+.. +++|
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD  103 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREM-EGID  103 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHH-TSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHc-CCCC
Confidence            568899998 69999999998888998 68888888776554 344554322 2112 12223333333333322 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus       104 ~lvnnAg~  111 (266)
T 3grp_A          104 ILVNNAGI  111 (266)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999985

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.96  E-value=0.0095  Score=49.90  Aligned_cols=105  Identities=14%  Similarity=0.272  Sum_probs=64.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEec-CChhHHHH----HHHcCCCEe-eccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLSI----ARNLGADET-AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~-~~~~~~~~----~~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| ++++|.++++.+...|+ .|+.++ +++++.+.    +++.+.... +..+ .+.++....+.++.+.. 
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   94 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF-   94 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            468899998 69999999998888999 555544 44444332    233343222 2222 22223333444444333 


Q ss_pred             CCccEEEEccCCh----------H---------------HHHHHHHhhcCCCEEEEeccc
Q 020928          208 SGIDVSFDCVGFD----------K---------------TMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       208 ~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      +.+|+++++.|..          +               ..+.+.+.+..+|+++.++..
T Consensus        95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  154 (270)
T 3is3_A           95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN  154 (270)
T ss_dssp             SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence            4799999998852          1               245566778889999998763

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.96  E-value=0.016  Score=48.52  Aligned_cols=104  Identities=19%  Similarity=0.320  Sum_probs=64.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHHH----HHcCCCEe-eccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA----RNLGADET-AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~~----~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| ++++|.++++.+...|+ .|+.+ .+..++.+.+    ++.+.... +..+ .+.++....+.++.+.. 
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  107 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL-  107 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            568899998 59999999998888999 56665 4444443322    23343322 2222 22223334444444333 


Q ss_pred             CCccEEEEccCCh----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +++|+++++.|..          +               ..+.+.+.++.+|+++.++.
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            4799999998851          1               24455667778899998875

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.96  E-value=0.008  Score=51.79  Aligned_cols=82  Identities=11%  Similarity=0.231  Sum_probs=52.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCC--C-EeeccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGA--D-ETAKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~--~-~v~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      .++++||+| +|++|..++..+...|+ .|+.+++++++.+.+.+    .+.  . ..+..+ .+.+++...+..+.+. 
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-   84 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR-   84 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh-
Confidence            467899998 59999999998888898 68888888876554322    222  1 112222 2223333444444433 


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                      .+.+|++|++.|.
T Consensus        85 ~g~id~lv~nAg~   97 (319)
T 3ioy_A           85 FGPVSILCNNAGV   97 (319)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             CCCCCEEEECCCc
Confidence            3479999999983

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.94  E-value=0.013  Score=49.32  Aligned_cols=82  Identities=20%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCC-EeeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD-ETAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+ ++++.. ..+..+- +.++....+.++.+.. +++|
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD  105 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAF-GGVD  105 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHH-SSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            467899998 69999999998888899 788888887765544 445432 2222222 2223333344443333 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus       106 ~lvnnAg~  113 (277)
T 3gvc_A          106 KLVANAGV  113 (277)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999985

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.93  E-value=0.0034  Score=49.25  Aligned_cols=101  Identities=18%  Similarity=0.249  Sum_probs=66.5

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      ...++++++||-+|+|. |..++.+++. +. .|++++.+++..+.+++    .+...+.....   +.    ..+....
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~---~~----~~l~~~~   86 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELILD---GH----ENLDHYV   86 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEES---CG----GGGGGTC
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC---cH----HHHHhhc
Confidence            45688999999999877 8888888887 65 89999999988777765    34322211111   11    1111112


Q ss_pred             CCCccEEEEccCC-----------h----HHHHHHHHhhcCCCEEEEecc
Q 020928          207 GSGIDVSFDCVGF-----------D----KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~-----------~----~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ...+|+|+-+.+-           .    ..+..+.+.|+++|+++.+..
T Consensus        87 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           87 REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            4569998765321           1    235778889999999987653

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.93  E-value=0.009  Score=50.89  Aligned_cols=101  Identities=15%  Similarity=0.223  Sum_probs=71.0

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ++..+++++.+||-+|+|. |..++.+++..|. .|++++.+++..+.+++.    +....+.+..  .++    ..+  
T Consensus        65 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~----~~~--  134 (302)
T 3hem_A           65 LDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI--QGW----EEF--  134 (302)
T ss_dssp             HHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEE--CCG----GGC--
T ss_pred             HHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE--CCH----HHc--
Confidence            3557889999999999987 8899999998886 899999999888777653    3321111111  121    112  


Q ss_pred             hcCCCccEEEEccCC---------------hHHHHHHHHhhcCCCEEEEecc
Q 020928          205 AMGSGIDVSFDCVGF---------------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                        ...+|+|+....-               ...+..+.+.|+|+|+++....
T Consensus       135 --~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          135 --DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             --CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             --CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence              4579999864321               2467888899999999987654

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.93  E-value=0.0067  Score=50.82  Aligned_cols=104  Identities=19%  Similarity=0.265  Sum_probs=62.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHHH----HHcCCCEe-eccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA----RNLGADET-AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~~----~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| ++++|.++++.+...|+ .|+.+ .+++++.+.+    ++.+.... +..+ .+.++....+.++.+.. 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-  103 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF-  103 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            578999998 59999999988878899 45554 5555444332    23343221 2112 12223333344443332 


Q ss_pred             CCccEEEEccCCh----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +++|+++++.|..          +               ..+.+.+.++.+|+++.++.
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  162 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST  162 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence            4799999999852          1               23455566677899998874

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.92  E-value=0.0029  Score=52.62  Aligned_cols=125  Identities=18%  Similarity=0.310  Sum_probs=74.4

Q ss_pred             CceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH--
Q 020928          102 KLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN--  179 (319)
Q Consensus       102 ~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~--  179 (319)
                      ...+.+++++.+..... +........+... ++++++||-+|+|. |..++.+++ .|. .|++++.++...+.+++  
T Consensus        88 ~~~~~l~p~~~fgtg~~-~tt~~~~~~l~~~-~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~  162 (254)
T 2nxc_A           88 EIPLVIEPGMAFGTGHH-ETTRLALKALARH-LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANA  162 (254)
T ss_dssp             SEEEECCCC-----CCS-HHHHHHHHHHHHH-CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHH
T ss_pred             ceEEEECCCccccCCCC-HHHHHHHHHHHHh-cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHH
Confidence            34456666554433221 1111223334333 68899999999877 888887777 577 89999999988777765  


Q ss_pred             --cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEecc
Q 020928          180 --LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       180 --~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                        .+.. + .+.  ..+....   +   ....+|+|+.+...   ...+..+.+.|+++|+++..+.
T Consensus       163 ~~~~~~-v-~~~--~~d~~~~---~---~~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          163 KRNGVR-P-RFL--EGSLEAA---L---PFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             HHTTCC-C-EEE--ESCHHHH---G---GGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHcCCc-E-EEE--ECChhhc---C---cCCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEee
Confidence              2332 1 111  1122221   1   13579999875432   2356777889999999998654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.91  E-value=0.0047  Score=50.50  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=69.7

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHHcCCC--EeeccCCCCcchhHHHHHhhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNLGAD--ETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      +....++||++||=.|+|+ |..+..+|+..|.+ +|++++.+++..+.+++.-..  .+..+.....+. ..   .. .
T Consensus        70 l~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p-~~---~~-~  143 (233)
T 4df3_A           70 LIELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFP-EK---YR-H  143 (233)
T ss_dssp             CSCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCG-GG---GT-T
T ss_pred             hhhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCc-cc---cc-c
Confidence            3457799999999999988 88999999988754 799999999988777653211  111111111111 00   11 1


Q ss_pred             cCCCccEEEEccCCh----HHHHHHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSFDCVGFD----KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~----~~~~~~~~~l~~~G~~v~~  239 (319)
                      ....+|+||..+..+    ..+..+.+.|+++|+++..
T Consensus       144 ~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          144 LVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            134689888766554    2466777899999998764

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.90  E-value=0.011  Score=49.78  Aligned_cols=104  Identities=16%  Similarity=0.268  Sum_probs=63.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH-HH----HHHHcCCCEe-eccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LS----IARNLGADET-AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~-~~----~~~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +++++||+| +|++|.++++.+...|+ +|+.++++.++ .+    .+++.+.... +..+ .+.++....+.++.+.. 
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-  105 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF-  105 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            467899998 69999999998888898 67777666432 22    2233443221 2111 12223333333333322 


Q ss_pred             CCccEEEEccCCh----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +++|++|++.|..          +               ..+.+.+.|+..|+++.++.
T Consensus       106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            4799999998842          1               23455566667799999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.89  E-value=0.025  Score=45.85  Aligned_cols=105  Identities=10%  Similarity=0.048  Sum_probs=59.5

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh-hHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV-QRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .+.+|||+|+|.+|...+.++...|++ |.+++... ...+.+.+.+.-..+.-     .+..       ..-.++|+||
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~-VtVvap~~~~~l~~l~~~~~i~~i~~-----~~~~-------~dL~~adLVI   96 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAA-ITVVAPTVSAEINEWEAKGQLRVKRK-----KVGE-------EDLLNVFFIV   96 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCC-EEEECSSCCHHHHHHHHTTSCEEECS-----CCCG-------GGSSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHcCCcEEEEC-----CCCH-------hHhCCCCEEE
Confidence            468999999999999999999999994 55554432 22222222232122211     1110       0124799999


Q ss_pred             EccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHH
Q 020928          215 DCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAA  254 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  254 (319)
                      -+.+.++.-..+... +..|.++.+-..+...+|.+...+
T Consensus        97 aAT~d~~~N~~I~~~-ak~gi~VNvvD~p~~~~f~~Paiv  135 (223)
T 3dfz_A           97 VATNDQAVNKFVKQH-IKNDQLVNMASSFSDGNIQIPAQF  135 (223)
T ss_dssp             ECCCCTHHHHHHHHH-SCTTCEEEC-----CCSEECCEEE
T ss_pred             ECCCCHHHHHHHHHH-HhCCCEEEEeCCcccCeEEEeeEE
Confidence            999987544444444 448877766544433344444433

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.88  E-value=0.017  Score=46.33  Aligned_cols=91  Identities=13%  Similarity=0.206  Sum_probs=60.0

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +|||+| +|.+|..+++.+...|. .|+++++++++.+.+. .+.. .+..+-.+.+.    ..+     .++|+||+++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~-~~~~D~~d~~~----~~~-----~~~d~vi~~a   69 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDIN-ILQKDIFDLTL----SDL-----SDQNVVVDAY   69 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSE-EEECCGGGCCH----HHH-----TTCSEEEECC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCe-EEeccccChhh----hhh-----cCCCEEEECC
Confidence            589998 59999999999888898 7888888887766543 2322 22222111111    222     3689999999


Q ss_pred             CCh--------HHHHHHHHhhcCC--CEEEEecc
Q 020928          218 GFD--------KTMSTALNATRPG--GKVCLIGL  241 (319)
Q Consensus       218 g~~--------~~~~~~~~~l~~~--G~~v~~g~  241 (319)
                      |..        .....+++.++..  ++++.++.
T Consensus        70 g~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS  103 (221)
T 3ew7_A           70 GISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGG  103 (221)
T ss_dssp             CSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred             cCCccccchHHHHHHHHHHHHHhcCCceEEEEec
Confidence            863        2345666666554  68887764

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.87  E-value=0.007  Score=50.25  Aligned_cols=81  Identities=19%  Similarity=0.225  Sum_probs=52.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCC-CcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD-IEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+.+++++++.+..++++. ..+..+-. .++....+.++.+.. +++|++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~-g~iD~l   81 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYAL-GRVDVL   81 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            467899998 59999999998888898 68888777766445555542 33322222 223333344333322 479999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        82 v~~Ag~   87 (256)
T 2d1y_A           82 VNNAAI   87 (256)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999874

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.86  E-value=0.016  Score=48.66  Aligned_cols=82  Identities=20%  Similarity=0.291  Sum_probs=51.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCC-CEe--eccCC-CCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGA-DET--AKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~-~~v--~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+++++++++.+.+.    +.+. ..+  +..+- +.+++...+.++.+..
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            467899998 69999999998888898 6888888876654332    2232 122  21121 2223333333333322


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                       +++|++|++.|.
T Consensus       110 -g~iD~vi~~Ag~  121 (279)
T 1xg5_A          110 -SGVDICINNAGL  121 (279)
T ss_dssp             -CCCSEEEECCCC
T ss_pred             -CCCCEEEECCCC
Confidence             479999999883

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.84  E-value=0.013  Score=49.24  Aligned_cols=81  Identities=12%  Similarity=0.125  Sum_probs=51.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+    ++.+... .+..+ .+.++....+.++.+.  +
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~--g  108 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI--A  108 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH--S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh--C
Confidence            468899998 69999999998888899 677777776543332    2234222 12112 2223334444444433  5


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|+++++.|.
T Consensus       109 ~iD~lvnnAg~  119 (275)
T 4imr_A          109 PVDILVINASA  119 (275)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.84  E-value=0.013  Score=48.44  Aligned_cols=82  Identities=15%  Similarity=0.244  Sum_probs=52.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCE-eeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+ ++++... .+..+ .+.++....+..+.+.. +.+|
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~id   82 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRL-GTLN   82 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHH-CSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHc-CCCC
Confidence            467899998 69999999998888898 688888887765543 3444322 12112 12223333333333322 4699


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|++.|.
T Consensus        83 ~lv~~Ag~   90 (253)
T 1hxh_A           83 VLVNNAGI   90 (253)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.84  E-value=0.0052  Score=51.07  Aligned_cols=103  Identities=14%  Similarity=0.187  Sum_probs=70.9

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCE--eeccCCCCcchhHHHHHhhhhc
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE--TAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      ++...++++.+||-+|+|. |..+..+++..+. .|++++.+++..+.+++.....  +.....   +..    .+ ...
T Consensus        48 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~----~~-~~~  117 (266)
T 3ujc_A           48 LSDIELNENSKVLDIGSGL-GGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEAN---DIL----TK-EFP  117 (266)
T ss_dssp             TTTCCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEEC---CTT----TC-CCC
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEC---ccc----cC-CCC
Confidence            3556788999999999884 8888899997776 8999999999999988854321  110001   110    01 012


Q ss_pred             CCCccEEEEccCC--------hHHHHHHHHhhcCCCEEEEecc
Q 020928          207 GSGIDVSFDCVGF--------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ...+|+|+....-        ...+..+.+.|+|+|+++....
T Consensus       118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            4579999875321        1346788889999999987753

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.82  E-value=0.018  Score=48.88  Aligned_cols=104  Identities=18%  Similarity=0.210  Sum_probs=63.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh-HHHH----HHHcCCCEe-eccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ-RLSI----ARNLGADET-AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~-~~~~----~~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +|++|.++++.+...|+ +|++++++++ ..+.    +++.+.... +..+ .+.++....+.++.+.. 
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  123 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL-  123 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            568999998 69999999998888898 6777766554 2222    233343222 2112 12223333444444333 


Q ss_pred             CCccEEEEccCCh-----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD-----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~-----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +.+|++|++.|..           +               ..+.+.+.++.+|+++.++.
T Consensus       124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence            4799999997741           0               23444556677899998874

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.81  E-value=0.0037  Score=50.79  Aligned_cols=103  Identities=12%  Similarity=0.063  Sum_probs=68.9

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcC-----CCeEEEecCChhHHHHHHHc----C-----CCEeeccCCCCcchhHH
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFG-----APRIIITDVDVQRLSIARNL----G-----ADETAKVSTDIEDVDTD  198 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g-----~~~vv~v~~~~~~~~~~~~~----g-----~~~v~~~~~~~~~~~~~  198 (319)
                      .++++++||-+|+|. |..++.+++..+     ...|++++.+++..+.+++.    +     ...+.....   +....
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~---d~~~~  152 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK---NIYQV  152 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC---CGGGC
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC---ChHhc
Confidence            688999999999887 888889999876     22799999999888777653    2     111111111   21111


Q ss_pred             HHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          199 VGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       199 i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..... .....+|+|+....-......+.+.|+++|+++..-
T Consensus       153 ~~~~~-~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~  193 (227)
T 2pbf_A          153 NEEEK-KELGLFDAIHVGASASELPEILVDLLAENGKLIIPI  193 (227)
T ss_dssp             CHHHH-HHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEE
T ss_pred             ccccC-ccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            10000 013469999887666556788899999999988664

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.80  E-value=0.006  Score=48.32  Aligned_cols=102  Identities=15%  Similarity=0.207  Sum_probs=68.6

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHc----CC-CEeeccCCCCcchhHHHHHhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL----GA-DETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ...++++++||-.|+|. |..++.+++..+ ...+++++.+++..+.+++.    +. ..+.....   +..    .+..
T Consensus        17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~----~~~~   88 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD---GHQ----NMDK   88 (197)
T ss_dssp             HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECS---CGG----GGGG
T ss_pred             HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC---CHH----HHhh
Confidence            35678899999999877 888888888864 23899999999887777653    33 11211111   211    1211


Q ss_pred             hcCCCccEEEEccCC---------------hHHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFDCVGF---------------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .....+|+|+-..+-               ...+..+.+.|+++|+++...
T Consensus        89 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           89 YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            124679999865532               246888999999999998764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.79  E-value=0.0022  Score=52.48  Aligned_cols=104  Identities=12%  Similarity=0.147  Sum_probs=68.9

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC--CEeeccCCCCcchhHHHHHhhhhcC
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA--DETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      +...++++++||-+|+|. |..+..+++..|...|++++.+++..+.+++.-.  ..+........+..    .... ..
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~-~~  141 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ----EYAN-IV  141 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG----GGTT-TS
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcc----cccc-cC
Confidence            345678899999999887 8899999998874589999999988877765321  11111111111100    0001 12


Q ss_pred             CCccEEEEccCCh---H-HHHHHHHhhcCCCEEEEe
Q 020928          208 SGIDVSFDCVGFD---K-TMSTALNATRPGGKVCLI  239 (319)
Q Consensus       208 ~~~d~v~d~~g~~---~-~~~~~~~~l~~~G~~v~~  239 (319)
                      ..+|+|+..+..+   . .+..+.+.|+++|+++..
T Consensus       142 ~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            4699999766554   2 477888899999999875

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.79  E-value=0.017  Score=49.11  Aligned_cols=104  Identities=16%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh--hHHHH----HHHcCCCEe-eccCC-CCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSI----ARNLGADET-AKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~--~~~~~----~~~~g~~~v-~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      .++++||+| ++++|.+++..+...|+ .|+.++++.  +..+.    +++.+.... +..+- +.++....+.++.+..
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            468999998 69999999998888999 677766542  22222    233443222 11111 1223333334443332


Q ss_pred             CCCccEEEEccCCh-----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          207 GSGIDVSFDCVGFD-----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~-----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                       +++|+++++.|..           +               ..+.+.+.+..+|+++.++.
T Consensus       127 -g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          127 -GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             -TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             -CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence             4799999998841           0               23344456677899999875

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.77  E-value=0.018  Score=48.10  Aligned_cols=104  Identities=15%  Similarity=0.204  Sum_probs=62.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCC-----C-EeeccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA-----D-ETAKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~-----~-~v~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+++++++++.+.+ +++..     . ..+..+ .+.++....+..+.+..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            467899998 59999999998888898 688888887664432 22321     1 112112 12223333333333322


Q ss_pred             CCCccEEEEccCCh--H---------------HHHHHHHhhcC-----CCEEEEecc
Q 020928          207 GSGIDVSFDCVGFD--K---------------TMSTALNATRP-----GGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~--~---------------~~~~~~~~l~~-----~G~~v~~g~  241 (319)
                       +.+|++|++.|..  +               ..+.+++.+..     .|+++.++.
T Consensus        85 -g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS  140 (267)
T 2gdz_A           85 -GRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  140 (267)
T ss_dssp             -SCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             -CCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence             4699999999842  0               12344555543     588998875

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.77  E-value=0.0067  Score=49.72  Aligned_cols=81  Identities=17%  Similarity=0.220  Sum_probs=52.2

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCC-EeeccC-CCCcchhHHHHHhhhhcCCCccE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      ++++||+| +|++|.+++..+...|+ +|+.+++++++.+.+.+ ++.. ..+..+ .+.++....+.++.+.. +.+|+
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~id~   80 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWG-GLPEL   80 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHH-CSCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc-CCCcE
Confidence            56899998 59999999988888898 78888888877665443 3321 111111 22223333344443333 47999


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      ++++.|.
T Consensus        81 lvnnAg~   87 (235)
T 3l6e_A           81 VLHCAGT   87 (235)
T ss_dssp             EEEECCC
T ss_pred             EEECCCC
Confidence            9999885

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.77  E-value=0.011  Score=48.93  Aligned_cols=82  Identities=16%  Similarity=0.246  Sum_probs=51.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c----C-CCEeeccCC--C-CcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L----G-ADETAKVST--D-IEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~----g-~~~v~~~~~--~-~~~~~~~i~~~~~~  205 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+.+ +    + ....+..+-  . .++....+.++.+.
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            578999998 59999999998888899 68888888876554322 2    1 112222221  2 22233333334332


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                       .+++|+++++.|.
T Consensus        90 -~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 -YPRLDGVLHNAGL  102 (252)
T ss_dssp             -CSCCSEEEECCCC
T ss_pred             -CCCCCEEEECCcc
Confidence             3479999999984

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.76  E-value=0.023  Score=47.80  Aligned_cols=104  Identities=21%  Similarity=0.282  Sum_probs=63.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC------------hhHHHH----HHHcCCCEe-eccC-CCCcchh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD------------VQRLSI----ARNLGADET-AKVS-TDIEDVD  196 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~------------~~~~~~----~~~~g~~~v-~~~~-~~~~~~~  196 (319)
                      .++++||+| ++++|..+++.+...|+ +|+.++++            .++.+.    +++.+.... +..+ .+.++..
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence            468999998 69999999998888898 67777665            333322    223342221 1112 1222333


Q ss_pred             HHHHHhhhhcCCCccEEEEccCCh--------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          197 TDVGKIQNAMGSGIDVSFDCVGFD--------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       197 ~~i~~~~~~~~~~~d~v~d~~g~~--------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ..+.++.+.. +++|+++++.|..        +               ..+.+.+.+..+|+++.++.
T Consensus        88 ~~~~~~~~~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           88 RELANAVAEF-GKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHH-SCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHc-CCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence            3344444333 4799999998851        1               22344455667899998874

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.75  E-value=0.0032  Score=51.50  Aligned_cols=103  Identities=18%  Similarity=0.215  Sum_probs=68.2

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCE-eeccCCCCcchhHHHHHhhhhc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADE-TAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~-v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .+..++.+||.+|+| .|..++.+++......|++++.+++..+.+++.    |... +....   .+....+....  .
T Consensus        50 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~--~  123 (233)
T 2gpy_A           50 LKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLF---GDALQLGEKLE--L  123 (233)
T ss_dssp             HHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC---SCGGGSHHHHT--T
T ss_pred             HhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---CCHHHHHHhcc--c
Confidence            345678899999988 488899999987434899999999888877653    4321 21111   12222121111  1


Q ss_pred             CCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...+|+||....-   ...+..+.+.|+++|+++...
T Consensus       124 ~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          124 YPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             SCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            3579999866553   346678888999999998753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.75  E-value=0.011  Score=48.35  Aligned_cols=98  Identities=12%  Similarity=0.143  Sum_probs=63.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .+.+|||+| +|.+|..++..+...|. .|+++++++++.+.+.+.+....+..+-.     +.+.+.    -.++|+||
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-----~~~~~~----~~~~D~vi   89 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVANLE-----EDFSHA----FASIDAVV   89 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEECCTT-----SCCGGG----GTTCSEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEcccH-----HHHHHH----HcCCCEEE
Confidence            467899998 59999999998888898 78888899888877776665122222211     122222    23799999


Q ss_pred             EccCChH-------------HHHHHHHhhc--CCCEEEEecccC
Q 020928          215 DCVGFDK-------------TMSTALNATR--PGGKVCLIGLAK  243 (319)
Q Consensus       215 d~~g~~~-------------~~~~~~~~l~--~~G~~v~~g~~~  243 (319)
                      ++.|...             ....+++.+.  ..++++.++...
T Consensus        90 ~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  133 (236)
T 3e8x_A           90 FAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG  133 (236)
T ss_dssp             ECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred             ECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            9998531             1223333332  347899887643

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.75  E-value=0.011  Score=49.07  Aligned_cols=104  Identities=17%  Similarity=0.218  Sum_probs=67.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEe-eccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADET-AKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      +|+++||+| ++++|.+..+.+...|+ +|+.+++++++.+.+    ++.|.... +..+ ++.++....+.+..+.. +
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~-G   83 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY-S   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            478899998 69999999998888999 788888888765533    33453322 1111 23334444444444433 4


Q ss_pred             CccEEEEccCCh-----------H---------------HHHHHHHhh--cCCCEEEEecc
Q 020928          209 GIDVSFDCVGFD-----------K---------------TMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       209 ~~d~v~d~~g~~-----------~---------------~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      ++|+++++.|..           +               ..+.+++.|  +.+|+++.+++
T Consensus        84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS  144 (254)
T 4fn4_A           84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTAS  144 (254)
T ss_dssp             CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence            799999999831           0               235556666  45789999874

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.74  E-value=0.017  Score=47.46  Aligned_cols=82  Identities=17%  Similarity=0.180  Sum_probs=50.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCC---CEeeccCC-CCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA---DETAKVST-DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~---~~v~~~~~-~~~~~~~~i~~~~~~~~~~  209 (319)
                      +++++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+ +++..   ...+..+- +.+++...+..+.+.. +.
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~   82 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF-GP   82 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHh-CC
Confidence            467899998 69999999998888898 688888887665443 33321   12222221 1223333333333322 46


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|++.|.
T Consensus        83 id~li~~Ag~   92 (251)
T 1zk4_A           83 VSTLVNNAGI   92 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.73  E-value=0.013  Score=48.08  Aligned_cols=78  Identities=24%  Similarity=0.306  Sum_probs=51.5

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      ++++||+| +|.+|.++++.+...|+ .|+.+++++++  ..++++. ..+..+-.+++....+.++.+.. +++|++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~-g~id~lv~   76 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGA-VPLPTDLEKDDPKGLVKRALEAL-GGLHVLVH   76 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTC-EEEECCTTTSCHHHHHHHHHHHH-TSCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCc-EEEecCCchHHHHHHHHHHHHHc-CCCCEEEE
Confidence            56899998 69999999998888898 68888787665  3444553 22222222244444444444333 47999999


Q ss_pred             ccCC
Q 020928          216 CVGF  219 (319)
Q Consensus       216 ~~g~  219 (319)
                      +.|.
T Consensus        77 ~Ag~   80 (239)
T 2ekp_A           77 AAAV   80 (239)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9874

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.73  E-value=0.017  Score=48.00  Aligned_cols=82  Identities=15%  Similarity=0.204  Sum_probs=50.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHHHH----HcCCCE-eeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIAR----NLGADE-TAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~~~----~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +++++||+| +|++|.++++.+...|+ .|+.+ .+++++.+.+.    +.+... .+..+ .+.++....+.++.+.. 
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETF-   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            577899998 69999999998888999 55554 77776544332    233222 12112 12223333444443333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        81 g~id~lv~nAg~   92 (258)
T 3oid_A           81 GRLDVFVNNAAS   92 (258)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999974

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.73  E-value=0.01  Score=49.15  Aligned_cols=82  Identities=20%  Similarity=0.299  Sum_probs=52.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c-----C--CCEeeccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L-----G--ADETAKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~-----g--~~~v~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+.+ +     +  ....+..+ .+.++....+.++.+.
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            467899998 59999999988888898 78888888876554432 2     2  11222222 2222333344444333


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +++|+++++.|.
T Consensus        85 ~-g~iD~lvnnAg~   97 (250)
T 3nyw_A           85 Y-GAVDILVNAAAM   97 (250)
T ss_dssp             H-CCEEEEEECCCC
T ss_pred             c-CCCCEEEECCCc
Confidence            2 479999999985

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.72  E-value=0.018  Score=49.98  Aligned_cols=131  Identities=15%  Similarity=0.170  Sum_probs=79.3

Q ss_pred             CeEEEECCCHHHHHHHHHHH-H-cCCCeEEEecCChhHHHH-HHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          138 TNVMIMGSGPIGLVTLLAAR-A-FGAPRIIITDVDVQRLSI-ARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~-~-~g~~~vv~v~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      -+|.|+|+|.+|...++.++ . .+++.+.+.++++++.+. .+++|...+..      ++    .++.+  ..++|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~------~~----~~~l~--~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT------NY----KDMID--TENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES------CH----HHHHT--TSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC------CH----HHHhc--CCCCCEEE
Confidence            47899999999988877766 4 466445566788877654 45577644321      22    22321  34799999


Q ss_pred             EccCChHHHHHHHHhhcCCCEEEEecccCCccccc-chH----HHhc-CcEEEEeec--cCCCHHHHHHHHHcCCC
Q 020928          215 DCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVA-LTP----AAAR-EVDVIGIFR--YRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~~----~~~~-~~~i~~~~~--~~~~~~~~~~~~~~g~~  282 (319)
                      .|+........+..+++.+- -+.+.-+.. .+.. ...    ...+ ++.+.-...  +...+..+.+++.+|.+
T Consensus        77 i~tp~~~h~~~~~~al~~G~-~v~~eKp~~-~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~~g~i  150 (346)
T 3cea_A           77 IVAPTPFHPEMTIYAMNAGL-NVFCEKPLG-LDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDNGDI  150 (346)
T ss_dssp             ECSCGGGHHHHHHHHHHTTC-EEEECSCCC-SCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHHTTTT
T ss_pred             EeCChHhHHHHHHHHHHCCC-EEEEcCCCC-CCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHHcCCC
Confidence            99998777788888888754 444432111 1111 111    1233 445443222  24457888899999887

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.72  E-value=0.014  Score=48.09  Aligned_cols=81  Identities=23%  Similarity=0.332  Sum_probs=52.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeeccCC-CCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVST-DIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~~-~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .++++||+| +|++|.++++.+...|+ .|+.+++++++.+.+ ++++. ..+..+- +.++....+.++.+.. +++|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~-g~id~   80 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGA-HPVVMDVADPASVERGFAEALAHL-GRLDG   80 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTC-EEEECCTTCHHHHHHHHHHHHHHH-SSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCC-EEEEecCCCHHHHHHHHHHHHHHc-CCCCE
Confidence            367899998 59999999998888898 688888887765544 33453 2222222 2223333344433322 46999


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      +|++.|.
T Consensus        81 lvn~Ag~   87 (245)
T 1uls_A           81 VVHYAGI   87 (245)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.71  E-value=0.012  Score=48.97  Aligned_cols=82  Identities=26%  Similarity=0.325  Sum_probs=52.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCC-EeeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|.+|..++..+...|+ .|+.+++++++.+.+. ++... ..+..+ .+.+++...+.++.+.. +++|
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~-g~iD   88 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDAL-GGFD   88 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHH-TCCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHc-CCCC
Confidence            467899998 69999999998888898 7888888877665443 33221 112112 12223333344443332 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|++.|.
T Consensus        89 ~lv~~Ag~   96 (263)
T 3ak4_A           89 LLCANAGV   96 (263)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999883

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.71  E-value=0.011  Score=49.81  Aligned_cols=99  Identities=14%  Similarity=0.186  Sum_probs=68.5

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      +..+++++.+||-+|+|. |..+..+++..|. .|++++.+++..+.+++.    +...-+.+..  .++    ..+   
T Consensus        58 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~--~d~----~~~---  126 (287)
T 1kpg_A           58 GKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLL--AGW----EQF---  126 (287)
T ss_dssp             TTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE--SCG----GGC---
T ss_pred             HHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE--CCh----hhC---
Confidence            446788999999999887 8888899987888 899999999888877663    3211111111  121    111   


Q ss_pred             cCCCccEEEEc-----cCC---hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDC-----VGF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                       ...+|+|+..     ++.   ...+..+.+.|+|+|+++...
T Consensus       127 -~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          127 -DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             -CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence             2579999865     221   246788889999999998754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.70  E-value=0.028  Score=41.50  Aligned_cols=77  Identities=17%  Similarity=0.218  Sum_probs=51.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      +.+++|+|+|.+|...++.+...|. .|+++++++++.+.+++ ++...+ .-+..  +. ..+.   +..-.++|+||-
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~-~~d~~--~~-~~l~---~~~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVI-NGDCT--KI-KTLE---DAGIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEE-ESCTT--SH-HHHH---HTTTTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEEE-EcCCC--CH-HHHH---HcCcccCCEEEE
Confidence            3579999999999999998888897 78888888887776654 454322 11111  11 1121   111246899999


Q ss_pred             ccCChH
Q 020928          216 CVGFDK  221 (319)
Q Consensus       216 ~~g~~~  221 (319)
                      +++.+.
T Consensus        76 ~~~~~~   81 (140)
T 1lss_A           76 VTGKEE   81 (140)
T ss_dssp             CCSCHH
T ss_pred             eeCCch
Confidence            998763

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.70  E-value=0.009  Score=49.70  Aligned_cols=83  Identities=12%  Similarity=0.206  Sum_probs=52.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HH---cCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RN---LGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~---~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|.+|.++++.+...|+ .|+.+++++++.+.+ ++   .+... .+..+ .+.++....+.++.+..++
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   86 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   86 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            467899998 59999999998888898 688888887665432 22   23221 11111 1222333344444433325


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|+++++.|.
T Consensus        87 ~id~lv~~Ag~   97 (260)
T 2ae2_A           87 KLNILVNNAGI   97 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999883

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.69  E-value=0.0087  Score=49.92  Aligned_cols=104  Identities=14%  Similarity=0.226  Sum_probs=60.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh---HHH-HHHH---cCCCEe-eccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ---RLS-IARN---LGADET-AKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~---~~~-~~~~---~g~~~v-~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++...   +.+ ..++   .+.... +..+ .+.++....+.++.+.
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899998 69999999998888899 6777655432   222 2222   232211 1112 2222333344444333


Q ss_pred             cCCCccEEEEccCCh----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          206 MGSGIDVSFDCVGFD----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      . +++|+++++.|..          +               ..+.+.+.|+.+|+++.++.
T Consensus        89 ~-g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS  148 (262)
T 3ksu_A           89 F-GKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT  148 (262)
T ss_dssp             H-CSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred             c-CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence            3 4799999999841          1               12333445556789998864

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.68  E-value=0.004  Score=52.15  Aligned_cols=81  Identities=22%  Similarity=0.229  Sum_probs=50.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+..... ..+..+ .+.++....+.++.+.. +++|++
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD~l   91 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNT-LCAQVDVTDKYTFDTAITRAEKIY-GPADAI   91 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTE-EEEECCTTCHHHHHHHHHHHHHHH-CSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCc-eEEEecCCCHHHHHHHHHHHHHHC-CCCCEE
Confidence            467899998 59999999998888898 67788887766543321111 111112 22223333344443332 479999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        92 vnnAg~   97 (266)
T 3p19_A           92 VNNAGM   97 (266)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999985

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.68  E-value=0.011  Score=49.27  Aligned_cols=81  Identities=19%  Similarity=0.266  Sum_probs=50.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc-----C-CCEeeccCC-CCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL-----G-ADETAKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~-----g-~~~v~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+ +++     + ....+..+- +.+++...+.++.+..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            467899998 69999999998888898 688888887665433 222     2 112222221 2223333444444322


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                        ++|++|++.|.
T Consensus        85 --gid~lv~~Ag~   95 (260)
T 2z1n_A           85 --GADILVYSTGG   95 (260)
T ss_dssp             --CCSEEEECCCC
T ss_pred             --CCCEEEECCCC
Confidence              29999999884

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.67  E-value=0.018  Score=47.79  Aligned_cols=82  Identities=22%  Similarity=0.239  Sum_probs=50.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH-HHH-HHHc----CCCE-eeccCC-CCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LSI-ARNL----GADE-TAKVST-DIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~-~~~-~~~~----g~~~-v~~~~~-~~~~~~~~i~~~~~~~  206 (319)
                      +++++||+| +|.+|..+++.+...|+ .|+.+++++++ .+. .+++    +... .+..+- +.+++...+.++.+..
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            367899998 59999999998888898 67777777665 333 2222    4322 121121 2223333333333322


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                       +++|++|++.|.
T Consensus        82 -g~iD~lv~~Ag~   93 (260)
T 1x1t_A           82 -GRIDILVNNAGI   93 (260)
T ss_dssp             -SCCSEEEECCCC
T ss_pred             -CCCCEEEECCCC
Confidence             479999999874

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.67  E-value=0.015  Score=48.21  Aligned_cols=77  Identities=10%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH---HcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR---NLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +++||+| +|.+|..+++.+...|+ +|+.+++++++.+.+.   +.+..... +  +.++....+.++.+.. +++|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~-~--d~~~v~~~~~~~~~~~-g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKP-M--SEQEPAELIEAVTSAY-GQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEE-C--CCCSHHHHHHHHHHHH-SCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEE-E--CHHHHHHHHHHHHHHh-CCCCEE
Confidence            3688888 69999999998888898 6888887776554433   22432211 1  2334444444444333 479999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        77 v~nAg~   82 (254)
T 1zmt_A           77 VSNDIF   82 (254)
T ss_dssp             EEECCC
T ss_pred             EECCCc
Confidence            999874

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.66  E-value=0.012  Score=49.42  Aligned_cols=83  Identities=14%  Similarity=0.251  Sum_probs=52.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-H---HcCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-R---NLGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~---~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|.+|.++++.+...|+ .|+.+++++++.+.+ +   +.+... .+..+ .+.++....+.++.+..++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            467899998 59999999998888898 688888887665433 2   224321 12112 1222333334444333325


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|+++++.|.
T Consensus        99 ~id~lv~nAg~  109 (273)
T 1ae1_A           99 KLNILVNNAGV  109 (273)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            79999999885

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.66  E-value=0.018  Score=47.65  Aligned_cols=81  Identities=15%  Similarity=0.295  Sum_probs=49.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH---cCCCE-eeccC-CCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN---LGADE-TAKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~---~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+.++++++ .+..++   .+... .+..+ .+.+++...+.++.+.. ++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~   79 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP-APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREF-GG   79 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC-HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHH-SS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch-HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHc-CC
Confidence            367899998 59999999998888898 6777777654 223332   34322 12112 12223333333333322 47


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|++.|.
T Consensus        80 id~lv~~Ag~   89 (255)
T 2q2v_A           80 VDILVNNAGI   89 (255)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.66  E-value=0.014  Score=48.95  Aligned_cols=82  Identities=22%  Similarity=0.219  Sum_probs=52.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCEeeccCC-CCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVST-DIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~v~~~~~-~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .++++||+| +|.+|..+++.+...|+ +|+.+++++++.+.+. ++.....+..+- +.++....+.++.+.. +++|+
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD~   85 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRF-GRLDC   85 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHc-CCCCE
Confidence            467899998 59999999998888898 6888888877665443 343222222222 2223333333333322 47999


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      +|++.|.
T Consensus        86 lv~nAg~   92 (270)
T 1yde_A           86 VVNNAGH   92 (270)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999874

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.65  E-value=0.0083  Score=51.45  Aligned_cols=91  Identities=22%  Similarity=0.247  Sum_probs=61.4

Q ss_pred             CeEEEECCCHHHHHHHHHH-H-HcCCCeEEEecCChhH--HHHHHHcCCCEeeccCCCCcchhHHHHHhhh-hcCCCccE
Q 020928          138 TNVMIMGSGPIGLVTLLAA-R-AFGAPRIIITDVDVQR--LSIARNLGADETAKVSTDIEDVDTDVGKIQN-AMGSGIDV  212 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la-~-~~g~~~vv~v~~~~~~--~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~-~~~~~~d~  212 (319)
                      -+|.|+|+|.+|...+..+ + .-++..+.++++++++  .++++++|.....      .+    +.++.+ +.+.++|+
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~------~~----~e~ll~~~~~~~iDv   74 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY------AG----VEGLIKLPEFADIDF   74 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES------SH----HHHHHHSGGGGGEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc------CC----HHHHHhccCCCCCcE
Confidence            4789999999998888877 4 3466455666766555  5677778754211      11    222322 12357999


Q ss_pred             EEEccCChHHHHHHHHhhcC--CCEEEE
Q 020928          213 SFDCVGFDKTMSTALNATRP--GGKVCL  238 (319)
Q Consensus       213 v~d~~g~~~~~~~~~~~l~~--~G~~v~  238 (319)
                      ||++++...+.+.+..++..  +..+++
T Consensus        75 V~~atp~~~h~~~a~~al~a~~Gk~Vi~  102 (312)
T 1nvm_B           75 VFDATSASAHVQNEALLRQAKPGIRLID  102 (312)
T ss_dssp             EEECSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EEECCChHHHHHHHHHHHHhCCCCEEEE
Confidence            99999977667777788877  777766

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.65  E-value=0.0074  Score=49.53  Aligned_cols=106  Identities=19%  Similarity=0.281  Sum_probs=69.6

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhh-
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNA-  205 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~-  205 (319)
                      .+..++++||.+|+|. |..++.+++..+ ...+++++.+++..+.+++.    |....+.+.  ..+..+.+..+... 
T Consensus        56 ~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~--~~d~~~~~~~~~~~~  132 (239)
T 2hnk_A           56 TKISGAKRIIEIGTFT-GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLK--LGSALETLQVLIDSK  132 (239)
T ss_dssp             HHHHTCSEEEEECCTT-CHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE--ESCHHHHHHHHHHCS
T ss_pred             HHhhCcCEEEEEeCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEE--ECCHHHHHHHHHhhc
Confidence            3456788999999885 889999999874 34899999999887777653    433211111  12332322222110 


Q ss_pred             ---------c-C-CCccEEEEccCCh---HHHHHHHHhhcCCCEEEEec
Q 020928          206 ---------M-G-SGIDVSFDCVGFD---KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ---------~-~-~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g  240 (319)
                               . + ..+|+||......   ..+..+.+.|+++|+++...
T Consensus       133 ~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          133 SAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             SCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                     0 1 5799998776543   45678889999999998753

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.65  E-value=0.016  Score=48.11  Aligned_cols=82  Identities=20%  Similarity=0.356  Sum_probs=53.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCE-eeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADE-TAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|.+|..+++.+...|+ +|+.++++.++.+.+ ++++... .+..+- +.++....+.++.+. .+++|
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~g~id   84 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEH-AGGLD   84 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHH-SSSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHH-cCCCC
Confidence            468899998 69999999998888898 688888887765543 4454322 222222 222333344444433 34799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus        85 ~lv~~Ag~   92 (259)
T 4e6p_A           85 ILVNNAAL   92 (259)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999985

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.65  E-value=0.013  Score=48.36  Aligned_cols=82  Identities=21%  Similarity=0.332  Sum_probs=53.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEe-eccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADET-AKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+ ++++.... +..+ .+.++....+.++.+.. +++|
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id   82 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALT-GGID   82 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHH-SCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHC-CCCC
Confidence            468899998 59999999998888999 688888888765544 44553322 1111 12223333344443332 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus        83 ~lv~nAg~   90 (247)
T 3rwb_A           83 ILVNNASI   90 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.64  E-value=0.015  Score=48.29  Aligned_cols=82  Identities=16%  Similarity=0.274  Sum_probs=48.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHH-H---HHcCCC-EeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSI-A---RNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~-~---~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+ .+++++.+. .   ++.+.. ..+..+ .+.++....+.++.+.. 
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF-   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh-
Confidence            468899998 69999999998888899 56555 555544332 2   233422 222222 22223333444444332 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus        85 g~id~lv~nAg~   96 (259)
T 3edm_A           85 GEIHGLVHVAGG   96 (259)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.63  E-value=0.027  Score=50.30  Aligned_cols=96  Identities=17%  Similarity=0.178  Sum_probs=67.9

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+.+|+|+|.|.+|+.+++.++..|. .|++++.++++.+.+++.|...+. -+..+.+   .++.   .+-.++|+++-
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~-GDat~~~---~L~~---agi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFY-GDATRMD---LLES---AGAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEE-SCTTCHH---HHHH---TTTTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEE-cCCCCHH---HHHh---cCCCccCEEEE
Confidence            34679999999999999999999998 799999999999999988865432 2232222   2222   22357899999


Q ss_pred             ccCChHHH---HHHHHhhcCCCEEEEe
Q 020928          216 CVGFDKTM---STALNATRPGGKVCLI  239 (319)
Q Consensus       216 ~~g~~~~~---~~~~~~l~~~G~~v~~  239 (319)
                      +++.++.-   ....+.+.+.-+++.-
T Consensus        75 ~~~~~~~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           75 AIDDPQTNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             CCSSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CCCChHHHHHHHHHHHHhCCCCeEEEE
Confidence            99986432   3344556677666643

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.62  E-value=0.01  Score=49.11  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=52.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+.    +.+... .+..+ ++.++....+.++.+.  +
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--g   82 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH--A   82 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH--S
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh--C
Confidence            467899998 59999999998888899 6888888876644332    223221 12112 2223333444444443  5


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|+++++.|.
T Consensus        83 ~id~lv~nAg~   93 (252)
T 3h7a_A           83 PLEVTIFNVGA   93 (252)
T ss_dssp             CEEEEEECCCC
T ss_pred             CceEEEECCCc
Confidence            79999999984

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.59  E-value=0.024  Score=49.39  Aligned_cols=105  Identities=22%  Similarity=0.244  Sum_probs=64.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH-----------HHHHHHcCCCEe-eccC-CCCcchhHHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-----------LSIARNLGADET-AKVS-TDIEDVDTDVGK  201 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~-----------~~~~~~~g~~~v-~~~~-~~~~~~~~~i~~  201 (319)
                      .++++||+| ++++|.+++..+...|+ .|+.+++++++           .+.+++.+.... +..+ .+.++....+.+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~  122 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK  122 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            578999998 59999999998888898 67777776542           233344443221 1112 222333344444


Q ss_pred             hhhhcCCCccEEEEccCCh----------H---------------HHHHHHHhhcC--CCEEEEeccc
Q 020928          202 IQNAMGSGIDVSFDCVGFD----------K---------------TMSTALNATRP--GGKVCLIGLA  242 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~  242 (319)
                      +.+.. +++|++|++.|..          +               ..+.+++.|+.  .|+++.++..
T Consensus       123 ~~~~~-g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~  189 (346)
T 3kvo_A          123 AIKKF-GGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPP  189 (346)
T ss_dssp             HHHHH-SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCC
T ss_pred             HHHHc-CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCH
Confidence            44333 4799999999851          1               23445555543  4899988753

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.59  E-value=0.0083  Score=48.15  Aligned_cols=99  Identities=18%  Similarity=0.178  Sum_probs=69.2

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ..++++.+||-+|+|. |..+..+++. |. .+++++.+++..+.+++.+...+.....   +..    .+  .....+|
T Consensus        42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~---d~~----~~--~~~~~~D  109 (218)
T 3ou2_A           42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQ---DLF----DW--TPDRQWD  109 (218)
T ss_dssp             TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEEC---CTT----SC--CCSSCEE
T ss_pred             hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEec---ccc----cC--CCCCcee
Confidence            4578888999999877 7788888887 76 8999999999999988865332211111   111    11  1246799


Q ss_pred             EEEEccCC--------hHHHHHHHHhhcCCCEEEEeccc
Q 020928          212 VSFDCVGF--------DKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       212 ~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      +|+....-        ...+..+.+.|+++|+++.....
T Consensus       110 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            99864322        24577888999999999877543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.57  E-value=0.011  Score=49.04  Aligned_cols=82  Identities=22%  Similarity=0.303  Sum_probs=52.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c---CCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L---GADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~---g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+.+ +   +... .+..+ .+.++....+.++.+.. +
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF-G   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            467899998 69999999998888898 68888888877655433 3   2211 12112 22223333444444333 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|+++++.|.
T Consensus        83 ~id~lv~nAg~   93 (257)
T 3imf_A           83 RIDILINNAAG   93 (257)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999983

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.57  E-value=0.012  Score=50.17  Aligned_cols=83  Identities=13%  Similarity=0.161  Sum_probs=50.5

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HHHc---CCCE--eeccCCCC--cchhHHHHHhhhh
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNL---GADE--TAKVSTDI--EDVDTDVGKIQNA  205 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~~~---g~~~--v~~~~~~~--~~~~~~i~~~~~~  205 (319)
                      ..++++||+| +|++|.++++.+...|+ .|+.+++++++.+. ++++   +...  .+..+-.+  +........+.+.
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            3567899998 59999999998888898 78888888776433 2322   2211  22222222  2222333333332


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                       .+++|++|++.|.
T Consensus        89 -~g~iD~lv~nAg~  101 (311)
T 3o26_A           89 -FGKLDILVNNAGV  101 (311)
T ss_dssp             -HSSCCEEEECCCC
T ss_pred             -CCCCCEEEECCcc
Confidence             2479999999985

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.56  E-value=0.011  Score=49.24  Aligned_cols=82  Identities=20%  Similarity=0.319  Sum_probs=51.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H---cCCCEe--eccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N---LGADET--AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~---~g~~~v--~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+. +   .+...+  +..+ .+.++....+.++.+.. 
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   86 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF-   86 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh-
Confidence            467899998 69999999998888899 7888888877655432 2   231122  2212 12223333334443333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus        87 g~id~lvnnAg~   98 (262)
T 3pk0_A           87 GGIDVVCANAGV   98 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999984

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.56  E-value=0.014  Score=47.97  Aligned_cols=82  Identities=12%  Similarity=0.187  Sum_probs=52.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcC--CCEeeccCC--C-CcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLG--ADETAKVST--D-IEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g--~~~v~~~~~--~-~~~~~~~i~~~~~~  205 (319)
                      .++++||+| +|++|..++..+...|+ +|+.+++++++.+.+.    +.+  ...++..+-  . .++....+.++.+.
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            568899998 59999999998888898 6888888887655433    223  122222221  1 22233333334333


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +++|++|++.|.
T Consensus        92 ~-g~id~lv~nAg~  104 (247)
T 3i1j_A           92 F-GRLDGLLHNASI  104 (247)
T ss_dssp             H-SCCSEEEECCCC
T ss_pred             C-CCCCEEEECCcc
Confidence            3 479999999884

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.56  E-value=0.003  Score=51.43  Aligned_cols=98  Identities=16%  Similarity=0.200  Sum_probs=67.2

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCC------CeEEEecCChhHHHHHHHc----C-----CCEeeccCCCCcchhH
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGA------PRIIITDVDVQRLSIARNL----G-----ADETAKVSTDIEDVDT  197 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~------~~vv~v~~~~~~~~~~~~~----g-----~~~v~~~~~~~~~~~~  197 (319)
                      .++++++||-+|+|. |..+..+++..+.      ..|++++.+++..+.+++.    +     ...+....   .+...
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~---~d~~~  156 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE---GDGRK  156 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE---SCGGG
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE---CCccc
Confidence            588999999999887 8888888887663      3799999999887777652    1     11111111   11111


Q ss_pred             HHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          198 DVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       198 ~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      .   +.  ....+|+|+....-......+.+.|+++|+++..
T Consensus       157 ~---~~--~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          157 G---YP--PNAPYNAIHVGAAAPDTPTELINQLASGGRLIVP  193 (227)
T ss_dssp             C---CG--GGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             C---CC--cCCCccEEEECCchHHHHHHHHHHhcCCCEEEEE
Confidence            0   11  1257999988776655668889999999998765

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.53  E-value=0.0032  Score=51.85  Aligned_cols=102  Identities=18%  Similarity=0.293  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          134 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       134 ~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      +-.|+++||+| ++++|.++.+.+...|+ +|+++++++++.+..+.-... .+..+-.  + .+.++++.+.. +++|+
T Consensus         8 lf~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~-~~~~Dv~--~-~~~v~~~~~~~-g~iDi   81 (242)
T 4b79_A            8 IYAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIR-REELDIT--D-SQRLQRLFEAL-PRLDV   81 (242)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEE-EEECCTT--C-HHHHHHHHHHC-SCCSE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeE-EEEecCC--C-HHHHHHHHHhc-CCCCE
Confidence            44789999998 69999999999999999 788888877654422211111 1111111  1 22344444443 47999


Q ss_pred             EEEccCCh--------H---------------HHHHHHHhhc-CCCEEEEecc
Q 020928          213 SFDCVGFD--------K---------------TMSTALNATR-PGGKVCLIGL  241 (319)
Q Consensus       213 v~d~~g~~--------~---------------~~~~~~~~l~-~~G~~v~~g~  241 (319)
                      ++++.|..        +               ..+...+.|+ .+|+++.+++
T Consensus        82 LVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS  134 (242)
T 4b79_A           82 LVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIAS  134 (242)
T ss_dssp             EEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECC
T ss_pred             EEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence            99999852        0               2344455663 5799999875

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.53  E-value=0.019  Score=48.64  Aligned_cols=79  Identities=23%  Similarity=0.354  Sum_probs=52.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCE-eeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADE-TAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~-v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+.+ ++... .+..+-.  + .+.++++.+.. .++|+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~--d-~~~v~~~~~~~-~~iD~   89 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQ--D-LSSVRRFADGV-SGADV   89 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTT--C-HHHHHHHHHTC-CCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCC--C-HHHHHHHHHhc-CCCCE
Confidence            568999998 59999999998888898 78888888877665543 43221 1111111  2 22344444333 47999


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      +|++.|.
T Consensus        90 lv~nAg~   96 (291)
T 3rd5_A           90 LINNAGI   96 (291)
T ss_dssp             EEECCCC
T ss_pred             EEECCcC
Confidence            9999984

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.52  E-value=0.017  Score=48.55  Aligned_cols=82  Identities=15%  Similarity=0.159  Sum_probs=49.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc---CCCE-eeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL---GADE-TAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~---g~~~-v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++.+...+.++++   +... .+..+-.+.+-...+.+..+. .+++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~-~g~i  107 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAA-TRRV  107 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHH-HSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHh-cCCC
Confidence            468899998 69999999998888899 677777766555555443   2211 121222222211222222222 2479


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |++|++.|.
T Consensus       108 D~lv~nAg~  116 (273)
T 3uf0_A          108 DVLVNNAGI  116 (273)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCCC
Confidence            999999885

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.52  E-value=0.013  Score=49.13  Aligned_cols=83  Identities=17%  Similarity=0.251  Sum_probs=52.5

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCC-EeeccC-CCCcchhHHHHHhhhhcCCCc
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      ..++++||+| +|++|.+++..+...|+ +|+.+++++++.+.+ ++++.. ..+..+ .+.++....+.++.+.. +++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~i  103 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKF-GRV  103 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHH-SCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHc-CCC
Confidence            3567889998 59999999998888899 688888887765544 445421 222222 22223333444443333 479


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |+++++.|.
T Consensus       104 D~lVnnAg~  112 (272)
T 4dyv_A          104 DVLFNNAGT  112 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999885

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.52  E-value=0.017  Score=47.74  Aligned_cols=82  Identities=18%  Similarity=0.314  Sum_probs=52.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-c---CCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-L---GADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~---g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|..+++.+...|+ +|+.+++++++.+.+.+ +   +... .+..+ .+.++....+.++.+.. +
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF-G   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            467899998 59999999998888898 68888888776554332 2   3211 12122 12223333334443333 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        86 ~id~li~~Ag~   96 (253)
T 3qiv_A           86 GIDYLVNNAAI   96 (253)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999875

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.52  E-value=0.016  Score=48.71  Aligned_cols=82  Identities=21%  Similarity=0.346  Sum_probs=51.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCC-EeeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+.    +.+.. ..+..+ .+.++....+.++.+.. +
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~-g  108 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL-G  108 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-C
Confidence            467899998 69999999998888899 6888888776544332    22321 222222 22223334444444333 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|+++++.|.
T Consensus       109 ~iD~lvnnAg~  119 (276)
T 3r1i_A          109 GIDIAVCNAGI  119 (276)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999885

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.52  E-value=0.021  Score=48.00  Aligned_cols=82  Identities=17%  Similarity=0.209  Sum_probs=51.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCC--C-EeeccCC-CCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA--D-ETAKVST-DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~--~-~v~~~~~-~~~~~~~~i~~~~~~~~~~  209 (319)
                      .++++||+| +|.+|.++++.+...|+ .|+.+++++++.+.+ +++..  . ..+..+- +.++....+.++.+. .++
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g~  105 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGEL-SAR  105 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHH-CSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHh-cCC
Confidence            467899998 59999999998888898 688888887765433 33321  1 1111111 122233333333332 347


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|++.|.
T Consensus       106 iD~lvnnAg~  115 (276)
T 2b4q_A          106 LDILVNNAGT  115 (276)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.52  E-value=0.021  Score=47.12  Aligned_cols=82  Identities=28%  Similarity=0.375  Sum_probs=51.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H---cCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N---LGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~---~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|.++++.+...|+ .|+.+++++++.+.+. +   .+... .+..+- +.++....+.++.+.. +
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g   83 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL-G   83 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence            467899998 59999999998888898 6888888877655332 2   24221 222221 2223333333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        84 ~id~lv~nAg~   94 (247)
T 2jah_A           84 GLDILVNNAGI   94 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.51  E-value=0.017  Score=49.18  Aligned_cols=94  Identities=15%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCC--EeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGAD--ETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~--~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .+.+++|+|+|++|.+++..+...|+..|++++++.++.+ ++++++..  .+.+       + +.+.+.    -.++|+
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~-------~-~~~~~~----~~~aDi  207 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS-------L-AEAETR----LAEYDI  207 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC-------H-HHHHHT----GGGCSE
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee-------H-HHHHhh----hccCCE
Confidence            5789999999999999999999899878889999887754 55556542  1111       1 122221    136899


Q ss_pred             EEEccCChHHH-----HHHHHhhcCCCEEEEecc
Q 020928          213 SFDCVGFDKTM-----STALNATRPGGKVCLIGL  241 (319)
Q Consensus       213 v~d~~g~~~~~-----~~~~~~l~~~G~~v~~g~  241 (319)
                      ||+|++.....     ......++++..++.+..
T Consensus       208 vIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          208 IINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             EEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred             EEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            99999864110     001234556666666654

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.51  E-value=0.02  Score=47.50  Aligned_cols=82  Identities=18%  Similarity=0.249  Sum_probs=53.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCE-eeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+. +++... .+..+ .+.++....+.++.+.. +++|
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~id   85 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKF-GKVD   85 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhc-CCCC
Confidence            467899998 59999999998888898 6888888887766543 454322 22222 22223333444444333 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|++.|.
T Consensus        86 ~li~~Ag~   93 (261)
T 3n74_A           86 ILVNNAGI   93 (261)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999874

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.51  E-value=0.0078  Score=49.79  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=67.1

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      ...++.+||-+|+|. |..++.+|+..+ ..+|++++.+++..+.+++.    |....+.+  ...+..+.+..+.  ..
T Consensus        60 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~--~~~d~~~~l~~~~--~~  134 (248)
T 3tfw_A           60 RLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTL--REGPALQSLESLG--EC  134 (248)
T ss_dssp             HHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEE--EESCHHHHHHTCC--SC
T ss_pred             hhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE--EEcCHHHHHHhcC--CC
Confidence            456788999999876 888889998874 34899999999888777653    54311111  1123322222221  12


Q ss_pred             CCccEEEEccCC---hHHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSFDCVGF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+|+||-....   ...+..+.+.|+++|.++.-.
T Consensus       135 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          135 PAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeC
Confidence            479999843222   246778889999999888654

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.50  E-value=0.025  Score=46.29  Aligned_cols=79  Identities=20%  Similarity=0.199  Sum_probs=51.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +++++||+| +|.+|..+++.+...|+ .|+++++++++.+.+ +++.....+..+-.  + .+.+.++.+. -+++|++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~--~-~~~~~~~~~~-~~~id~v   80 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLG--D-WEATERALGS-VGPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTT--C-HHHHHHHHTT-CCCCCEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCC--C-HHHHHHHHHH-cCCCCEE
Confidence            467899998 59999999998888998 688888887765544 33432233322222  2 1233333331 2469999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        81 i~~Ag~   86 (244)
T 3d3w_A           81 VNNAAV   86 (244)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999884

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.50  E-value=0.032  Score=48.92  Aligned_cols=91  Identities=12%  Similarity=0.178  Sum_probs=62.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|+|+|+|.+|..+++.+.. .. .|.+++.+.++.+.+++......++  ..  + .+.+.++.    .+.|+|+++++
T Consensus        18 kilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d--~~--d-~~~l~~~~----~~~DvVi~~~p   86 (365)
T 3abi_A           18 KVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVD--AS--N-FDKLVEVM----KEFELVIGALP   86 (365)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECC--TT--C-HHHHHHHH----TTCSEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEe--cC--C-HHHHHHHH----hCCCEEEEecC
Confidence            69999999999998887754 33 6778888888888776643222222  22  2 12333333    36899999998


Q ss_pred             ChHHHHHHHHhhcCCCEEEEec
Q 020928          219 FDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       219 ~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..-....+-.|+..+-.++++.
T Consensus        87 ~~~~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           87 GFLGFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             GGGHHHHHHHHHHHTCEEEECC
T ss_pred             CcccchHHHHHHhcCcceEeee
Confidence            6544556666888888888875

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.50  E-value=0.016  Score=47.93  Aligned_cols=98  Identities=19%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      -++++||+| +|.+|.++++.+...|+ .|+.+++++++.+.     .....+ ..+.++....+.++.+. .+.+|++|
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~d-~~d~~~v~~~~~~~~~~-~g~iD~li   92 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNAD-----HSFTIK-DSGEEEIKSVIEKINSK-SIKVDTFV   92 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSS-----EEEECS-CSSHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----cceEEE-eCCHHHHHHHHHHHHHH-cCCCCEEE
Confidence            367899998 59999999998888898 68888777654321     111112 12223333444444432 34799999


Q ss_pred             EccCCh-----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          215 DCVGFD-----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       215 d~~g~~-----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ++.|..           +               ..+.+.+.++.+|+++.++.
T Consensus        93 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (251)
T 3orf_A           93 CAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGA  145 (251)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEec
Confidence            999831           0               23445556667789998875

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.50  E-value=0.018  Score=48.56  Aligned_cols=82  Identities=18%  Similarity=0.250  Sum_probs=52.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-Hc---CCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL---GADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~---g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      +++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+. ++   +... .+..+ .+.++....+.++.+.. +
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g  104 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF-G  104 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            467899998 59999999998888899 7888888877655433 33   2221 12222 22223334444444333 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|+++++.|.
T Consensus       105 ~iD~lVnnAg~  115 (283)
T 3v8b_A          105 HLDIVVANAGI  115 (283)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.50  E-value=0.0043  Score=50.37  Aligned_cols=99  Identities=19%  Similarity=0.180  Sum_probs=67.1

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHHc----C-----CCEeeccCCCCcchhHHHHHh
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNL----G-----ADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~~----g-----~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      .++++++||-+|+|. |..+..+++..|.. .|++++.++...+.+++.    +     ...+.....   +...    .
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~---d~~~----~  145 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG---DGRM----G  145 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES---CGGG----C
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC---Cccc----C
Confidence            478999999999886 88888899887632 899999999888777642    2     111111111   1110    0


Q ss_pred             hhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      . .....+|+|+....-......+.+.|+++|+++..-
T Consensus       146 ~-~~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          146 Y-AEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             C-GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             c-ccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            0 013469999876665556788899999999988753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.50  E-value=0.015  Score=48.15  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=30.9

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +.+|+|+|+|++|..+++.+.+.|+..+..++...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            36899999999999999998889998888888775

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.50  E-value=0.021  Score=47.66  Aligned_cols=81  Identities=25%  Similarity=0.362  Sum_probs=51.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-Hc-----CCCE-eeccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL-----GADE-TAKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~-----g~~~-v~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      .++++||+| +|++|..+++.+...|+ +|+.+++++++.+.+. ++     +... .+..+ .+.++....+.++.+..
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            467899998 69999999998888898 6888888877654332 22     3221 12112 12223333444443322


Q ss_pred             CCCccEEEEccC
Q 020928          207 GSGIDVSFDCVG  218 (319)
Q Consensus       207 ~~~~d~v~d~~g  218 (319)
                       +++|++|++.|
T Consensus        91 -g~id~lv~nAg  101 (267)
T 1iy8_A           91 -GRIDGFFNNAG  101 (267)
T ss_dssp             -SCCSEEEECCC
T ss_pred             -CCCCEEEECCC
Confidence             47999999987

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.50  E-value=0.0065  Score=48.56  Aligned_cols=48  Identities=13%  Similarity=0.081  Sum_probs=39.8

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  180 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~  180 (319)
                      ....++++.+||..|+|. |..+..+++. |. .|+++|.+++..+.+++.
T Consensus        16 ~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~   63 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTE   63 (203)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHH
T ss_pred             HhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHH
Confidence            445678899999999877 7788888886 87 899999999988888763

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.49  E-value=0.012  Score=49.25  Aligned_cols=82  Identities=22%  Similarity=0.264  Sum_probs=52.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H---cCCCEe-eccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N---LGADET-AKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~---~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+. +   .+.... +..+ .+.++....+.++.+.. +
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g   80 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTW-G   80 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-C
Confidence            467899998 59999999998888898 6888888877655432 2   232221 1111 22223333444443332 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|+++++.|.
T Consensus        81 ~iD~lVnnAG~   91 (264)
T 3tfo_A           81 RIDVLVNNAGV   91 (264)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.49  E-value=0.018  Score=49.05  Aligned_cols=83  Identities=25%  Similarity=0.367  Sum_probs=53.0

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCE-eeccC-CCCcchhHHHHHhhhhcC
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADE-TAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      -.++++||+| +|++|..++..+...|+ .|+.+++++++.+.+.+    .+... .+..+ ++.++....+.++.+.. 
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  106 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL-  106 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC-
Confidence            3578999998 59999999998888898 68888888876554322    23222 12222 22223333334443322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus       107 g~id~lvnnAg~  118 (301)
T 3tjr_A          107 GGVDVVFSNAGI  118 (301)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999984

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.49  E-value=0.0041  Score=50.69  Aligned_cols=102  Identities=14%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC--EeeccCCCCcchhHHHHHhhhh
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD--ETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      .++...++++.+||-+|+|. |..+..+++.. . .+++++.+++..+.+++....  .+....   .+....   +.  
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~---~d~~~~---~~--  130 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLIL---GDGTLG---YE--  130 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEE---SCGGGC---CG--
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEE---CCcccc---cc--
Confidence            34556788999999999887 88888888874 4 899999999988888764211  111111   121110   11  


Q ss_pred             cCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+|+....-......+.+.|+++|+++..-
T Consensus       131 ~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          131 EEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             GGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             cCCCccEEEECCcHHHHHHHHHHHcCCCcEEEEEE
Confidence            13579999876554434567889999999988764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.48  E-value=0.021  Score=46.89  Aligned_cols=82  Identities=21%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|.+|..+++.+...|+ +|+.+++++++.+.+.    +.+... .+..+- +.++....+.++.+. .+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAE-NL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHT-TC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH-cC
Confidence            367899998 59999999988888898 6888888877655433    234322 122221 222333334444332 35


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        82 ~id~li~~Ag~   92 (247)
T 3lyl_A           82 AIDILVNNAGI   92 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999885

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.48  E-value=0.017  Score=47.85  Aligned_cols=82  Identities=24%  Similarity=0.302  Sum_probs=52.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCE-eeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|.+|.++++.+...|+ .|+.+++++++.+.+ ++++... .+..+ .+.+++...++++.+.. +++|
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~iD   81 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEF-GSVD   81 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            467899998 59999999998888898 688888887765543 3344221 12112 12223333444443322 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|++.|.
T Consensus        82 ~lv~nAg~   89 (254)
T 1hdc_A           82 GLVNNAGI   89 (254)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.46  E-value=0.013  Score=48.40  Aligned_cols=82  Identities=20%  Similarity=0.309  Sum_probs=53.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCC-EeeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+.+ ++.. ..+..+ .+.++....+.++.+.. +++|
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD   85 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEF-GGVD   85 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHH-CCCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHc-CCCC
Confidence            467899998 69999999998888999 68888888876654433 3321 112112 22223333444444333 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus        86 ~lv~nAg~   93 (248)
T 3op4_A           86 ILVNNAGI   93 (248)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.46  E-value=0.013  Score=49.42  Aligned_cols=82  Identities=20%  Similarity=0.266  Sum_probs=51.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-Hc---CCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL---GADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~---g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+. ++   +... .+..+- +.++....+.++.+.. +
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g   84 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF-G   84 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence            467899998 69999999998888899 6888888887655443 33   2221 111111 1222333333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        85 ~iD~lvnnAg~   95 (280)
T 3tox_A           85 GLDTAFNNAGA   95 (280)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999883

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.46  E-value=0.023  Score=47.24  Aligned_cols=82  Identities=29%  Similarity=0.396  Sum_probs=51.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc----CCCE-eeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL----GADE-TAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~----g~~~-v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +++++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+ +++    +... .+..+ .+.++....+.++.+.. 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   83 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSF-   83 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            467899998 59999999998888898 788888887665433 222    4321 12112 12223333333333322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        84 g~id~lv~~Ag~   95 (263)
T 3ai3_A           84 GGADILVNNAGT   95 (263)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.45  E-value=0.027  Score=47.29  Aligned_cols=82  Identities=15%  Similarity=0.262  Sum_probs=51.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HH---cCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RN---LGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~---~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|.+|.++++.+...|+ .|+++++++++.+.+ ++   .+... .+..+ .+.++....+.++.+.. +
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g   98 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY-G   98 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-C
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh-C
Confidence            467899998 69999999998888898 688888887665432 22   24322 12112 12223333344443332 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        99 ~iD~lv~~Ag~  109 (277)
T 2rhc_B           99 PVDVLVNNAGR  109 (277)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.45  E-value=0.014  Score=48.09  Aligned_cols=83  Identities=18%  Similarity=0.274  Sum_probs=53.1

Q ss_pred             CCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          133 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       133 ~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .-.+++++||+| +|.+|..++..+...|+ +|+.+++++++.+.+. ++.....+.. .+-.+ .+.+.++.+.. .++
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~D~~~-~~~~~~~~~~~-~~i   85 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEV-CNLAN-KEECSNLISKT-SNL   85 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEE-CCTTS-HHHHHHHHHTC-SCC
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEE-cCCCC-HHHHHHHHHhc-CCC
Confidence            345778999998 69999999988888898 7888888887766554 3443222111 11112 22333343322 479


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |++|++.|.
T Consensus        86 d~li~~Ag~   94 (249)
T 3f9i_A           86 DILVCNAGI   94 (249)
T ss_dssp             SEEEECCC-
T ss_pred             CEEEECCCC
Confidence            999999984

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.45  E-value=0.017  Score=48.65  Aligned_cols=82  Identities=20%  Similarity=0.242  Sum_probs=53.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEe-eccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADET-AKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+.+ ++.... +..+ .+.++....+.++.+.. +++|
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD   81 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAF-GKID   81 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhc-CCCC
Confidence            467899998 69999999998888898 78888888877665443 443221 2112 12223333444444333 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus        82 ~lvnnAg~   89 (281)
T 3zv4_A           82 TLIPNAGI   89 (281)
T ss_dssp             EEECCCCC
T ss_pred             EEEECCCc
Confidence            99999884

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.45  E-value=0.011  Score=50.17  Aligned_cols=82  Identities=18%  Similarity=0.288  Sum_probs=51.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCC---CEe--eccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGA---DET--AKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~---~~v--~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +|++|.++++.+...|+ .|+.+++++++.+.+ +++..   ..+  +..+- +.++....+.++.+.. 
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  117 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF-  117 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc-
Confidence            567899998 69999999998888999 688888877654433 33321   122  22221 2223333344443333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus       118 g~iD~lvnnAg~  129 (293)
T 3rih_A          118 GALDVVCANAGI  129 (293)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.44  E-value=0.014  Score=49.07  Aligned_cols=82  Identities=20%  Similarity=0.293  Sum_probs=51.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-H---HcCCC--Ee--eccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-R---NLGAD--ET--AKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~---~~g~~--~v--~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      .++++||+| +|.+|.++++.+...|+ +|+.+++++++.+.+ +   +.+..  .+  +..+ .+.++....+.++.+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            467899998 69999999998888899 688888887764433 2   23321  22  1111 1222333344444333


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +++|+++++.|.
T Consensus        89 ~-g~id~lv~nAg~  101 (281)
T 3svt_A           89 H-GRLHGVVHCAGG  101 (281)
T ss_dssp             H-SCCCEEEECCCC
T ss_pred             c-CCCCEEEECCCc
Confidence            2 479999999985

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.44  E-value=0.024  Score=47.18  Aligned_cols=82  Identities=21%  Similarity=0.242  Sum_probs=52.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| ++.+|.++++.+...|+ +|+.+++++++.+.+.    +.+... .+..+ .+.++....+.++.+.. +
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g   87 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY-G   87 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-S
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-C
Confidence            578999998 59999999998888899 6888888877655432    223222 12112 22223333444444333 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        88 ~id~lv~nAg~   98 (264)
T 3ucx_A           88 RVDVVINNAFR   98 (264)
T ss_dssp             CCSEEEECCCS
T ss_pred             CCcEEEECCCC
Confidence            79999999865

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.44  E-value=0.0081  Score=50.06  Aligned_cols=84  Identities=17%  Similarity=0.296  Sum_probs=51.5

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcC---CCeEEEecCChhHHHHHHHc---CCC-EeeccC-CCCcchhHHHHHhhhh
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFG---APRIIITDVDVQRLSIARNL---GAD-ETAKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g---~~~vv~v~~~~~~~~~~~~~---g~~-~v~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      .++.++||+| +|.+|..+++.+...|   . .|+.+++++++.+.++++   +.. ..+..+ .+.++....+.++.+.
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            3457899998 5999999999888888   6 788887776544433332   221 222222 2223444444444433


Q ss_pred             cCC-CccEEEEccCC
Q 020928          206 MGS-GIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~-~~d~v~d~~g~  219 (319)
                      .+. ++|++|++.|.
T Consensus        98 ~g~~~id~li~~Ag~  112 (267)
T 1sny_A           98 TKDQGLNVLFNNAGI  112 (267)
T ss_dssp             HGGGCCSEEEECCCC
T ss_pred             cCCCCccEEEECCCc
Confidence            332 69999999874

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.44  E-value=0.014  Score=49.16  Aligned_cols=82  Identities=16%  Similarity=0.183  Sum_probs=51.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-Hc---C-CC-EeeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL---G-AD-ETAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~---g-~~-~v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+. ++   + .. ..+..+- +.++....+.++.+.. 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  109 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF-  109 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            568899998 69999999998888899 7888888877655432 22   1 11 2222222 2223333444444333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus       110 g~iD~lvnnAG~  121 (281)
T 4dry_A          110 ARLDLLVNNAGS  121 (281)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999885

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.43  E-value=0.02  Score=46.60  Aligned_cols=81  Identities=22%  Similarity=0.234  Sum_probs=51.2

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCEeeccCC-CCcchhHHHHHhhhhcCCCccEE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADETAKVST-DIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~v~~~~~-~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +.++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+. +++....+..+- +.+++...+..+.+.. +++|++
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~l   82 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAF-GELSAL   82 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            56799998 69999999998888898 6888888877665443 343222222222 2223333333333322 479999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        83 i~~Ag~   88 (234)
T 2ehd_A           83 VNNAGV   88 (234)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999883

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.43  E-value=0.022  Score=47.02  Aligned_cols=101  Identities=22%  Similarity=0.238  Sum_probs=68.4

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~~  203 (319)
                      +....++++.+||-+|+|. |..+..+++..+. .+++++.++...+.+++    .|.. .+.....   ++.    ++.
T Consensus        29 ~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~---d~~----~~~   99 (256)
T 1nkv_A           29 GRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN---DAA----GYV   99 (256)
T ss_dssp             HHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES---CCT----TCC
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC---ChH----hCC
Confidence            4557789999999999887 8888899998887 79999999988777654    3332 1111111   111    111


Q ss_pred             hhcCCCccEEEEcc------CChHHHHHHHHhhcCCCEEEEec
Q 020928          204 NAMGSGIDVSFDCV------GFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       204 ~~~~~~~d~v~d~~------g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                        ....+|+|+..-      .-...+..+.+.|+|+|+++...
T Consensus       100 --~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          100 --ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             --CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             --cCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence              135699998521      11345788888999999988754

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.42  E-value=0.02  Score=49.06  Aligned_cols=100  Identities=17%  Similarity=0.272  Sum_probs=67.8

Q ss_pred             hcC-CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHhhh
Q 020928          131 RAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       131 ~~~-~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ... ++++++||-+|+|. |..+..+++..|. .|++++.+++..+.+++    .+.. .+.....   +..    .+. 
T Consensus       111 ~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~----~~~-  180 (312)
T 3vc1_A          111 HLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVC---NML----DTP-  180 (312)
T ss_dssp             TSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC---CTT----SCC-
T ss_pred             HhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC---Chh----cCC-
Confidence            344 78999999999876 8888888888777 79999999988877765    3422 1111111   110    010 


Q ss_pred             hcCCCccEEEEcc-----CChHHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFDCV-----GFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d~~-----g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .....+|+|+...     .-...+..+.+.|+++|+++...
T Consensus       181 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          181 FDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             CCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            0135799997632     22457888999999999998765

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.42  E-value=0.016  Score=48.10  Aligned_cols=82  Identities=15%  Similarity=0.217  Sum_probs=51.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+.    +.+... .+..+- +.++....+.++.+.. +
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g   88 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF-G   88 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence            467899998 69999999988878899 6888888877654432    233222 122222 2223333344443333 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|+++++.|.
T Consensus        89 ~id~lv~nAg~   99 (256)
T 3gaf_A           89 KITVLVNNAGG   99 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999885

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.42  E-value=0.013  Score=48.86  Aligned_cols=83  Identities=16%  Similarity=0.239  Sum_probs=50.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-H---HcCCCE-eeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-R---NLGADE-TAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~---~~g~~~-v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      .+.++||+| +|.+|..+++.+...|+ .|+++++++++.+.+ +   +.+... .+..+-. .++....+.++.+..++
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   91 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   91 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            467899998 69999999998888898 788888877654432 2   223221 1211211 22223333333332335


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        92 ~id~li~~Ag~  102 (266)
T 1xq1_A           92 KLDILINNLGA  102 (266)
T ss_dssp             CCSEEEEECCC
T ss_pred             CCcEEEECCCC
Confidence            79999999884

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.41  E-value=0.041  Score=45.79  Aligned_cols=103  Identities=15%  Similarity=0.135  Sum_probs=66.0

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      .+...+++++.+||=+|+|. |..++.+++. |. .|++++.+++..+.+++.-....+..+-..-+.     .......
T Consensus        37 il~~l~l~~g~~VLDlGcGt-G~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~-----~~~~~~~  108 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGAST-RFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITA-----EIPKELA  108 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTC-HHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTS-----CCCGGGT
T ss_pred             HHHhcCCCCcCEEEEEeCcc-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeeeccc-----ccccccC
Confidence            34557889999999999887 8888888875 66 899999999999988874322111110000000     0000113


Q ss_pred             CCccEEEEccCC-----h---HHHHHHHHhhcCCCEEEEe
Q 020928          208 SGIDVSFDCVGF-----D---KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       208 ~~~d~v~d~~g~-----~---~~~~~~~~~l~~~G~~v~~  239 (319)
                      ..+|+|+.+..-     +   ..+..+.+.| |+|+++..
T Consensus       109 ~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          109 GHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             TCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             CCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence            579999865321     1   2566677788 99998753

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.40  E-value=0.017  Score=48.21  Aligned_cols=85  Identities=15%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             CCCCCCeEEEEC-C--CHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEeeccCC-CCcchhHHHHHhhh
Q 020928          133 NVGPETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVST-DIEDVDTDVGKIQN  204 (319)
Q Consensus       133 ~~~~~~~vlI~G-~--g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~-~~~~~~~~i~~~~~  204 (319)
                      ...+++++||+| +  +++|..+++.+...|+ +|+.+++++...+.++    +.+....+..+- +.++....+.++.+
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence            345678999997 6  7999999998888898 6777777654444333    334222222222 22233344444443


Q ss_pred             hcCCCccEEEEccCC
Q 020928          205 AMGSGIDVSFDCVGF  219 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~  219 (319)
                      .. +++|++|++.|.
T Consensus        89 ~~-g~id~lv~nAg~  102 (271)
T 3ek2_A           89 HW-DSLDGLVHSIGF  102 (271)
T ss_dssp             HC-SCEEEEEECCCC
T ss_pred             Hc-CCCCEEEECCcc
Confidence            33 479999999874

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.39  E-value=0.014  Score=49.01  Aligned_cols=102  Identities=15%  Similarity=0.206  Sum_probs=68.7

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHHc-----CCCEeeccCCCCcchhHHHHHh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNL-----GADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~~-----g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      +....++++++||-.|+|. |..++.+++.. ....+++++.+++..+.+++.     |...+.....   |+.+.   +
T Consensus       103 ~~~~~~~~~~~VLD~G~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~---d~~~~---~  175 (275)
T 1yb2_A          103 IMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS---DIADF---I  175 (275)
T ss_dssp             ---CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS---CTTTC---C
T ss_pred             HHHcCCCCcCEEEEecCCC-CHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC---chhcc---C
Confidence            3457789999999999875 77888888873 223899999999888877663     4322211111   21110   1


Q ss_pred             hhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          203 QNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                         ....+|+|+-....+ ..+..+.+.|+++|+++...
T Consensus       176 ---~~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          176 ---SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             ---CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             ---cCCCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence               134699998766543 46788999999999998765

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.38  E-value=0.012  Score=49.49  Aligned_cols=82  Identities=24%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---CC---C-EeeccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---GA---D-ETAKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g~---~-~v~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+ +++   +.   . ..+..+ .+.++....+.++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            467899998 69999999998888898 688888887765443 222   22   1 112112 1222333334444333


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +++|++|++.|.
T Consensus        84 ~-g~iD~lv~nAg~   96 (280)
T 1xkq_A           84 F-GKIDVLVNNAGA   96 (280)
T ss_dssp             H-SCCCEEEECCCC
T ss_pred             c-CCCCEEEECCCC
Confidence            3 479999999873

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.38  E-value=0.024  Score=47.23  Aligned_cols=82  Identities=20%  Similarity=0.214  Sum_probs=51.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H----cCCCEe--eccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N----LGADET--AKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~----~g~~~v--~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+. +    .+...+  +..+ .+.++....+.++.+..
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            467899998 69999999998888899 6888888877654332 2    232212  1112 12223333334443322


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                       +++|+++++.|.
T Consensus        86 -g~id~lvnnAg~   97 (265)
T 3lf2_A           86 -GCASILVNNAGQ   97 (265)
T ss_dssp             -CSCSEEEECCCC
T ss_pred             -CCCCEEEECCCC
Confidence             479999999985

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.38  E-value=0.02  Score=47.58  Aligned_cols=104  Identities=12%  Similarity=0.089  Sum_probs=65.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH---HHcCCC-EeeccC-CCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA---RNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~---~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      +|+++||+| ++++|.+..+.+...|+ .|+..+++++..+.+   ++.+.. ..+..+ ++.++....+.+..+.. ++
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~-G~   83 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF-GR   83 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH-SC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh-CC
Confidence            578889998 69999999988888899 677777766544333   333422 222222 22334444444444433 47


Q ss_pred             ccEEEEccCCh---------H---------------HHHHHHHhh-cCCCEEEEecc
Q 020928          210 IDVSFDCVGFD---------K---------------TMSTALNAT-RPGGKVCLIGL  241 (319)
Q Consensus       210 ~d~v~d~~g~~---------~---------------~~~~~~~~l-~~~G~~v~~g~  241 (319)
                      +|+++++.|..         +               ..+.+++.| +.+|+++.+++
T Consensus        84 iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS  140 (258)
T 4gkb_A           84 LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISS  140 (258)
T ss_dssp             CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEee
Confidence            99999999852         1               234455556 34699998875

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.37  E-value=0.033  Score=46.59  Aligned_cols=82  Identities=21%  Similarity=0.307  Sum_probs=51.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCE-eeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADE-TAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~-v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      .+.++||+| +|.+|..++..+...|+ .|+++++++++.+.+.    +.+... .+..+-. .++....+.++.+. -+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~g  107 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE-IG  107 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH-TC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHH-CC
Confidence            467899998 69999999998888898 6888888876654332    224321 2222211 22333333333332 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus       108 ~iD~li~~Ag~  118 (272)
T 1yb1_A          108 DVSILVNNAGV  118 (272)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCcEEEECCCc
Confidence            79999999874

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.37  E-value=0.022  Score=46.91  Aligned_cols=81  Identities=22%  Similarity=0.303  Sum_probs=51.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCE--eeccCCC-CcchhHHHHHhhhhcCCCc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADE--TAKVSTD-IEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~--v~~~~~~-~~~~~~~i~~~~~~~~~~~  210 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+ ++++...  .+..+-. .++....+.++.+  .+++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~i   86 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEA--VAPV   86 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHH--HSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHh--hCCC
Confidence            467899998 69999999998888898 688888887765543 3344322  1222211 2222233333332  2479


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |++|++.|.
T Consensus        87 d~li~~Ag~   95 (254)
T 2wsb_A           87 SILVNSAGI   95 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCcc
Confidence            999999884

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.37  E-value=0.009  Score=49.08  Aligned_cols=82  Identities=21%  Similarity=0.311  Sum_probs=52.1

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcC--CCeEEEecCChhHHHHHHHc-CCC-EeeccCCC-CcchhHHHHHhhhhcC-CC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFG--APRIIITDVDVQRLSIARNL-GAD-ETAKVSTD-IEDVDTDVGKIQNAMG-SG  209 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g--~~~vv~v~~~~~~~~~~~~~-g~~-~v~~~~~~-~~~~~~~i~~~~~~~~-~~  209 (319)
                      +.++||+| +|.+|..+++.+...|  . .|+.+++++++.+.++++ +.. ..+..+-. .++....+.++.+..+ .+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~   81 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence            56899998 5999999999888889  6 788888888776666655 221 12222211 2233333333333222 27


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|++.|.
T Consensus        82 id~li~~Ag~   91 (250)
T 1yo6_A           82 LSLLINNAGV   91 (250)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCcc
Confidence            9999999874

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.36  E-value=0.022  Score=46.48  Aligned_cols=81  Identities=21%  Similarity=0.232  Sum_probs=50.4

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-----HcCCCEe-eccCC-CCcchhHHHHHhhhhcCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-----NLGADET-AKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-----~~g~~~v-~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      ++++||+| +|++|..+++.+...|+ .|+.++++.++.+.+.     +.+.... +..+- +.++....+.++.+.. +
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g   79 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERF-G   79 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHH-S
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhc-C
Confidence            57899998 59999999998888998 6888888877654432     2333221 21121 2222333333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        80 ~id~li~~Ag~   90 (235)
T 3l77_A           80 DVDVVVANAGL   90 (235)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999999885

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.36  E-value=0.012  Score=48.78  Aligned_cols=97  Identities=10%  Similarity=0.006  Sum_probs=63.8

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCC--------------------CEeeccCCC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGA--------------------DETAKVSTD  191 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~--------------------~~v~~~~~~  191 (319)
                      ..+++.+||..|+|. |..+..||+. |+ .|++++.++...+.+++ .+.                    ..+..+.  
T Consensus        65 ~~~~~~~vLD~GCG~-G~~~~~La~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--  139 (252)
T 2gb4_A           65 KGQSGLRVFFPLCGK-AIEMKWFADR-GH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYC--  139 (252)
T ss_dssp             TTCCSCEEEETTCTT-CTHHHHHHHT-TC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEE--
T ss_pred             cCCCCCeEEEeCCCC-cHHHHHHHHC-CC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEE--
Confidence            356888999999877 8788888875 88 89999999999888865 321                    0110000  


Q ss_pred             CcchhHHHHHhhhhcCCCccEEEEccCC--------hHHHHHHHHhhcCCCEEEEe
Q 020928          192 IEDVDTDVGKIQNAMGSGIDVSFDCVGF--------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       192 ~~~~~~~i~~~~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~  239 (319)
                       .|    +.++.....+.||+|++...-        ...+..+.+.|+|+|+++.+
T Consensus       140 -~D----~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          140 -CS----IFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             -SC----TTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -Cc----cccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence             11    112221112579999974321        13577788999999998644

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.35  E-value=0.033  Score=48.75  Aligned_cols=103  Identities=16%  Similarity=0.146  Sum_probs=65.8

Q ss_pred             HHHHHhcC-CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC----hhH---------HHHHHHcCCCEeeccCCC
Q 020928          126 VHACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD----VQR---------LSIARNLGADETAKVSTD  191 (319)
Q Consensus       126 ~~~l~~~~-~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~----~~~---------~~~~~~~g~~~v~~~~~~  191 (319)
                      +.+++..+ --++.+|+|.|+|..|..+.+++...|++.|++++++    .+|         .+++++.+.     + ..
T Consensus       180 ~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~-----~-~~  253 (388)
T 1vl6_A          180 LNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP-----E-RL  253 (388)
T ss_dssp             HHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT-----T-CC
T ss_pred             HHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc-----c-Cc
Confidence            33444433 3366899999999999999999999999889999887    443         344444321     0 11


Q ss_pred             CcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc
Q 020928          192 IEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       192 ~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      ..+..+.+        .++|++|-+.+..-..+..++.|+++-.++.+..+
T Consensus       254 ~~~L~eav--------~~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSNP  296 (388)
T 1vl6_A          254 SGDLETAL--------EGADFFIGVSRGNILKPEWIKKMSRKPVIFALANP  296 (388)
T ss_dssp             CSCHHHHH--------TTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSS
T ss_pred             hhhHHHHH--------ccCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCCC
Confidence            11222222        24799998887433445677778876655555443

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.35  E-value=0.026  Score=46.60  Aligned_cols=74  Identities=15%  Similarity=0.141  Sum_probs=48.0

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      -.++++||+| +|.+|..+++.+...|+ .|+.++++++.   +++++....+ .+- .++    +..+.+... ++|++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~~~~~~-~D~-~~~----~~~~~~~~~-~iD~l   85 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVV-CDL-RKD----LDLLFEKVK-EVDIL   85 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEE-CCT-TTC----HHHHHHHSC-CCSEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHH---HHhhCCeEEE-eeH-HHH----HHHHHHHhc-CCCEE
Confidence            4578899998 59999999998888898 68888887643   3444422222 211 122    333332222 79999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        86 v~~Ag~   91 (249)
T 1o5i_A           86 VLNAGG   91 (249)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999874

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.34  E-value=0.02  Score=47.91  Aligned_cols=82  Identities=22%  Similarity=0.282  Sum_probs=52.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HHHcCCCE-eeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+. .++++... .+..+ .+.++....+.++.+.. +++|
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id   87 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTF-GRLD   87 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHc-CCCC
Confidence            467899998 69999999998888998 68888887765543 34455322 22112 22223333344443333 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus        88 ~lv~nAg~   95 (271)
T 3tzq_B           88 IVDNNAAH   95 (271)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.34  E-value=0.017  Score=52.52  Aligned_cols=93  Identities=19%  Similarity=0.225  Sum_probs=68.4

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .-.|.+|.|+|.|.+|..+++.++.+|+ +|++.+++..+.......|... .       +    +.++.    ...|+|
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~~-~-------~----l~ell----~~aDiV  336 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYRV-V-------T----MEYAA----DKADIF  336 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCEE-C-------C----HHHHT----TTCSEE
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCEe-C-------C----HHHHH----hcCCEE
Confidence            3578899999999999999999999999 7999998887653334445421 0       1    22222    358999


Q ss_pred             EEccCChHHH-HHHHHhhcCCCEEEEecccC
Q 020928          214 FDCVGFDKTM-STALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       214 ~d~~g~~~~~-~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +-+++....+ ...++.|+++..++.++...
T Consensus       337 i~~~~t~~lI~~~~l~~MK~gAilINvgrg~  367 (494)
T 3d64_A          337 VTATGNYHVINHDHMKAMRHNAIVCNIGHFD  367 (494)
T ss_dssp             EECSSSSCSBCHHHHHHCCTTEEEEECSSSS
T ss_pred             EECCCcccccCHHHHhhCCCCcEEEEcCCCc
Confidence            9988655333 46778999999999998644

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.34  E-value=0.029  Score=45.14  Aligned_cols=96  Identities=13%  Similarity=0.072  Sum_probs=59.3

Q ss_pred             CeEEEEC-CCHHHHHHHHHHH-HcCCCeEEEecCChh-HHHHHHHcCC-CEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          138 TNVMIMG-SGPIGLVTLLAAR-AFGAPRIIITDVDVQ-RLSIARNLGA-DETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~-~~g~~~vv~v~~~~~-~~~~~~~~g~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +++||+| +|.+|..+++.+. ..|. .|++++++++ +.+.+...+. ...+..+-.  + .+.+.++.    .++|++
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~--d-~~~~~~~~----~~~d~v   77 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSFQ--N-PGXLEQAV----TNAEVV   77 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCTT--C-HHHHHHHH----TTCSEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCCC--C-HHHHHHHH----cCCCEE
Confidence            4699998 5999999988777 8898 7888888877 6554432222 122221111  2 12333332    368999


Q ss_pred             EEccCChHH-HHHHHHhhcC--CCEEEEecc
Q 020928          214 FDCVGFDKT-MSTALNATRP--GGKVCLIGL  241 (319)
Q Consensus       214 ~d~~g~~~~-~~~~~~~l~~--~G~~v~~g~  241 (319)
                      |++.|.... .+.+++.+..  .++++.++.
T Consensus        78 v~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs  108 (221)
T 3r6d_A           78 FVGAMESGSDMASIVKALSRXNIRRVIGVSM  108 (221)
T ss_dssp             EESCCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEcCCCCChhHHHHHHHHHhcCCCeEEEEee
Confidence            999986311 3445555533  368888774

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.34  E-value=0.064  Score=44.88  Aligned_cols=105  Identities=20%  Similarity=0.261  Sum_probs=62.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH-----------HHHHHHcCCCEe-eccC-CCCcchhHHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-----------LSIARNLGADET-AKVS-TDIEDVDTDVGK  201 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~-----------~~~~~~~g~~~v-~~~~-~~~~~~~~~i~~  201 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.++++.++           .+.+++.+.... +..+ .+.++....+.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   83 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA   83 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence            467899998 69999999998888898 67777776532           122223343221 1112 222233334444


Q ss_pred             hhhhcCCCccEEEEccCCh----------H---------------HHHHHHHhh--cCCCEEEEeccc
Q 020928          202 IQNAMGSGIDVSFDCVGFD----------K---------------TMSTALNAT--RPGGKVCLIGLA  242 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~~  242 (319)
                      +.+.. +++|+++++.|..          +               ..+.+.+.|  +.+|+++.++..
T Consensus        84 ~~~~~-g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~  150 (274)
T 3e03_A           84 TVDTF-GGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPP  150 (274)
T ss_dssp             HHHHH-SCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCC
T ss_pred             HHHHc-CCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECCh
Confidence            44333 4799999999851          1               234455555  345899988753

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.33  E-value=0.055  Score=45.63  Aligned_cols=82  Identities=11%  Similarity=0.121  Sum_probs=48.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh-hHHHHH-H----HcCCCE-eeccCCC-----CcchhHHHHHh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV-QRLSIA-R----NLGADE-TAKVSTD-----IEDVDTDVGKI  202 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~-~~~~~~-~----~~g~~~-v~~~~~~-----~~~~~~~i~~~  202 (319)
                      .++++||+| +|++|.++++.+...|+ .|+.+++++ ++.+.+ +    +.+... .+..+-.     .++....+.++
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            467899998 59999999998888898 677777776 543322 2    223221 1211211     12223333333


Q ss_pred             hhhcCCCccEEEEccCC
Q 020928          203 QNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~  219 (319)
                      .+.. +++|++|++.|.
T Consensus       101 ~~~~-g~iD~lvnnAG~  116 (288)
T 2x9g_A          101 FRAF-GRCDVLVNNASA  116 (288)
T ss_dssp             HHHH-SCCCEEEECCCC
T ss_pred             HHhc-CCCCEEEECCCC
Confidence            3222 479999999874

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.32  E-value=0.034  Score=46.02  Aligned_cols=81  Identities=21%  Similarity=0.307  Sum_probs=50.7

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HH---cCCCE-eeccC-CCCcchhHHHHHhhhhcCCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RN---LGADE-TAKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~---~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      ++++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+ ++   .+... .+..+ .+.++....+.++.+.. ++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~   79 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL-GG   79 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT-TC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh-CC
Confidence            46889998 69999999998888898 688888887665433 22   23221 12222 12223333344443332 47


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|++.|.
T Consensus        80 id~lv~nAg~   89 (256)
T 1geg_A           80 FDVIVNNAGV   89 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.32  E-value=0.02  Score=47.98  Aligned_cols=82  Identities=21%  Similarity=0.378  Sum_probs=52.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-H---HcCCCEe-eccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-R---NLGADET-AKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~---~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+ +   +.+.... +..+ .+.++....+.++.+. .+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g  102 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQ-GI  102 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHH-TC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-CC
Confidence            467899998 59999999998888898 788888887765433 2   2343221 1111 1222333334444332 34


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|+++++.|.
T Consensus       103 ~iD~lv~nAg~  113 (271)
T 4ibo_A          103 DVDILVNNAGI  113 (271)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.32  E-value=0.028  Score=46.33  Aligned_cols=82  Identities=23%  Similarity=0.261  Sum_probs=51.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh-hHHH-HHHHcCCCE-eeccCC-CCcchhHHHHHhhhhcCCCc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV-QRLS-IARNLGADE-TAKVST-DIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~-~~~~-~~~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .++++||+| +|.+|..++..+...|+ +|+.+++++ ++.+ .+++.+... .+..+- +.++....+.++.+.. +++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~i   83 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF-GRC   83 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-SCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHc-CCC
Confidence            467899998 69999999998888898 677777776 5443 344555322 122221 2223333333333322 479


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |++|++.|.
T Consensus        84 d~lv~nAg~   92 (249)
T 2ew8_A           84 DILVNNAGI   92 (249)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.32  E-value=0.028  Score=49.15  Aligned_cols=131  Identities=16%  Similarity=0.150  Sum_probs=79.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      -+|.|+|+|.+|...+..++.. ++..+.+.++++++.+.++++|...   |    .++.    ++..  ...+|+|+.|
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~---~----~~~~----~ll~--~~~~D~V~i~   72 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKI---Y----ESYE----AVLA--DEKVDAVLIA   72 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCB---C----SCHH----HHHH--CTTCCEEEEC
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCce---e----CCHH----HHhc--CCCCCEEEEc
Confidence            4688999999998777766655 6644445688888877777777531   2    1222    2322  3579999999


Q ss_pred             cCChHHHHHHHHhhcCCCEEEEecccCCcccccch----HHHhcCcEEE-Ee-eccCCCHHHHHHHHHcCCC
Q 020928          217 VGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALT----PAAAREVDVI-GI-FRYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       217 ~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~----~~~~~~~~i~-~~-~~~~~~~~~~~~~~~~g~~  282 (319)
                      +........+..++..+-. +.+.-+.....-...    ..-.+++.+. +. ..+...++.+.+++++|.+
T Consensus        73 tp~~~h~~~~~~al~aGkh-Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~i  143 (359)
T 3e18_A           73 TPNDSHKELAISALEAGKH-VVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTI  143 (359)
T ss_dssp             SCGGGHHHHHHHHHHTTCE-EEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHHTTT
T ss_pred             CCcHHHHHHHHHHHHCCCC-EEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHcCCC
Confidence            9988777888888886654 444322111110111    1122333332 22 2345567888889999887

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.31  E-value=0.014  Score=49.71  Aligned_cols=82  Identities=22%  Similarity=0.302  Sum_probs=51.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H---cCC---C-EeeccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N---LGA---D-ETAKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~---~g~---~-~v~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      .++++||+| +|++|.++++.+...|+ .|+.+++++++.+.+. +   .+.   . ..+..+ .+.++....+.++.+.
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            467899998 69999999998888898 6888888877654332 2   232   1 112112 1222333333433332


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +++|++|++.|.
T Consensus       104 ~-g~iD~lvnnAG~  116 (297)
T 1xhl_A          104 F-GKIDILVNNAGA  116 (297)
T ss_dssp             H-SCCCEEEECCCC
T ss_pred             c-CCCCEEEECCCc
Confidence            2 479999999873

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.31  E-value=0.027  Score=47.31  Aligned_cols=83  Identities=20%  Similarity=0.264  Sum_probs=51.1

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H---cCCCEe-eccC-CCCcchhHHHHHhhhhcC
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N---LGADET-AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~---~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      -.++++||+| +|++|.+++..+...|+ +|+.+++++++.+.+. +   .+.... +..+ .+.++....+.++.+.. 
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-   99 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF-   99 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            3578999998 69999999988888899 6888888877654332 2   232221 1111 12223333444443333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus       100 g~id~lv~nAg~  111 (279)
T 3sju_A          100 GPIGILVNSAGR  111 (279)
T ss_dssp             CSCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            479999999885

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.31  E-value=0.024  Score=47.80  Aligned_cols=78  Identities=13%  Similarity=0.132  Sum_probs=53.0

Q ss_pred             HHHhcCC-CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HHHcCCC---EeeccCCCCcchhHHHHHh
Q 020928          128 ACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGAD---ETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       128 ~l~~~~~-~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~~~g~~---~v~~~~~~~~~~~~~i~~~  202 (319)
                      +|+.... -.+.+++|+|+|++|.+++..+...|+..|.+++++.++.+. +++++..   .+..+           .++
T Consensus       116 ~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~-----------~~l  184 (281)
T 3o8q_A          116 DLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAF-----------EQL  184 (281)
T ss_dssp             HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEG-----------GGC
T ss_pred             HHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeH-----------HHh
Confidence            3444333 357899999999999999998888998788888898877554 4444421   11111           111


Q ss_pred             hhhcCCCccEEEEccCCh
Q 020928          203 QNAMGSGIDVSFDCVGFD  220 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~  220 (319)
                          ..++|+||+|++..
T Consensus       185 ----~~~aDiIInaTp~g  198 (281)
T 3o8q_A          185 ----KQSYDVIINSTSAS  198 (281)
T ss_dssp             ----CSCEEEEEECSCCC
T ss_pred             ----cCCCCEEEEcCcCC
Confidence                25799999998754

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.30  E-value=0.023  Score=47.59  Aligned_cols=116  Identities=15%  Similarity=0.141  Sum_probs=69.5

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHH-HHHHHcCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL-SIARNLGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      +++......+.+++|+|+|++|.+++..+...|++.|.++.++.++. +++++++...    ..   +       +.   
T Consensus       110 ~l~~~~~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~----~~---~-------~~---  172 (271)
T 1npy_A          110 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY----IN---S-------LE---  172 (271)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE----ES---C-------CT---
T ss_pred             HHHHhCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCcc----ch---h-------hh---
Confidence            34444444678999999999999999988889987899999987764 4555566411    10   0       00   


Q ss_pred             CCCccEEEEccCChHH-------HHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEE
Q 020928          207 GSGIDVSFDCVGFDKT-------MSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVI  261 (319)
Q Consensus       207 ~~~~d~v~d~~g~~~~-------~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~  261 (319)
                      -..+|+||+|++..-.       .......+.++..++.+-..+.. +........++.++.
T Consensus       173 ~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P~~-T~ll~~A~~~G~~~i  233 (271)
T 1npy_A          173 NQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVE-TPFIRYAQARGKQTI  233 (271)
T ss_dssp             TCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSS-CHHHHHHHHTTCEEE
T ss_pred             cccCCEEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeecCCCC-CHHHHHHHHCCCEEE
Confidence            1368999999985411       00112345556666655432222 222333444555554

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.30  E-value=0.025  Score=47.22  Aligned_cols=82  Identities=27%  Similarity=0.401  Sum_probs=52.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H----cCCCE-eeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N----LGADE-TAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~----~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+. +    .+... .+..+ .+.++....+.++.+.. 
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   96 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF-   96 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Confidence            467899998 69999999998888999 6888888877654332 2    23222 12112 22334444444444433 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        97 g~id~lv~nAg~  108 (266)
T 4egf_A           97 GGLDVLVNNAGI  108 (266)
T ss_dssp             TSCSEEEEECCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999884

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.29  E-value=0.016  Score=48.68  Aligned_cols=82  Identities=21%  Similarity=0.192  Sum_probs=52.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCC-EeeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD-ETAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|.+|..+++.+...|+ +|+.+++++++.+.+ ++++.. ..+..+- +.++....+.++.+.. +++|
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g~id   81 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARY-GRVD   81 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhC-CCCC
Confidence            457899998 69999999998888998 688888877665544 344422 2222222 2223333333333322 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|++.|.
T Consensus        82 ~lv~~Ag~   89 (281)
T 3m1a_A           82 VLVNNAGR   89 (281)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999884

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.28  E-value=0.033  Score=46.52  Aligned_cols=82  Identities=15%  Similarity=0.330  Sum_probs=51.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc----CCCE-eeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL----GADE-TAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~----g~~~-v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +|.+|.++++.+...|+ .|+.+++++++.+.+ +++    +... .+..+ .+.+++...+.++.+.. 
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-   97 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF-   97 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            467899998 69999999998888898 688888887665433 222    4322 12112 12223333344443322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        98 g~iD~lvnnAg~  109 (267)
T 1vl8_A           98 GKLDTVVNAAGI  109 (267)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999884

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.28  E-value=0.029  Score=47.99  Aligned_cols=89  Identities=18%  Similarity=0.184  Sum_probs=64.8

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++.++ +.+.++|+...        +.    .++.    ...|+|+-
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~--------~l----~ell----~~aDvV~l  202 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKFV--------DL----ETLL----KESDVVTI  202 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEEC--------CH----HHHH----HHCSEEEE
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCcccc--------CH----HHHH----hhCCEEEE
Confidence            46789999999999999999999998 78898888776 55666775321        11    1222    24789998


Q ss_pred             ccCChH----HH-HHHHHhhcCCCEEEEeccc
Q 020928          216 CVGFDK----TM-STALNATRPGGKVCLIGLA  242 (319)
Q Consensus       216 ~~g~~~----~~-~~~~~~l~~~G~~v~~g~~  242 (319)
                      ++....    .+ ...+..|++++.++.++..
T Consensus       203 ~~p~~~~t~~li~~~~l~~mk~ga~lin~arg  234 (307)
T 1wwk_A          203 HVPLVESTYHLINEERLKLMKKTAILINTSRG  234 (307)
T ss_dssp             CCCCSTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred             ecCCChHHhhhcCHHHHhcCCCCeEEEECCCC
Confidence            877431    12 3567889999999988763

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.27  E-value=0.025  Score=45.61  Aligned_cols=105  Identities=19%  Similarity=0.229  Sum_probs=67.4

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      +..++.+||-+|+|. |..++.+++... ..++++++.+++..+.+++    .|....+.+  ...+..+.+..+.....
T Consensus        55 ~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~~~~~~~~~~  131 (223)
T 3duw_A           55 QIQGARNILEIGTLG-GYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEV--RTGLALDSLQQIENEKY  131 (223)
T ss_dssp             HHHTCSEEEEECCTT-SHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE--EESCHHHHHHHHHHTTC
T ss_pred             HhhCCCEEEEecCCc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE--EEcCHHHHHHHHHhcCC
Confidence            456788999999876 888888998863 2389999999988777654    343221111  11233333333332222


Q ss_pred             CCccEEEEccCC---hHHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSFDCVGF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+|+||-....   ...+..+.+.|+++|.++.-.
T Consensus       132 ~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          132 EPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred             CCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            569999843322   246778889999999887654

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.27  E-value=0.025  Score=47.32  Aligned_cols=82  Identities=24%  Similarity=0.349  Sum_probs=50.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HHHcCC---CEeeccCC-CCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-ARNLGA---DETAKVST-DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~~~g~---~~v~~~~~-~~~~~~~~i~~~~~~~~~~  209 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+.+++++++.+. .++++.   ...+..+- +.+++...+.++.+.. ++
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~   92 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH-GK   92 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHc-CC
Confidence            467899998 59999999998888898 68888887765443 333432   11221121 1223333333333322 47


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|++|++.|.
T Consensus        93 id~li~~Ag~  102 (278)
T 2bgk_A           93 LDIMFGNVGV  102 (278)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999873

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.26  E-value=0.041  Score=46.32  Aligned_cols=82  Identities=15%  Similarity=0.248  Sum_probs=49.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-ChhHHHHH-HHc----CCCE-eeccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA-RNL----GADE-TAKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-~~~~~~~~-~~~----g~~~-v~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      .++++||+| +|++|.+++..+...|+ +|+.+++ .+++.+.+ +++    +... .+..+ .+.++....+.++.+. 
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-  101 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADR-  101 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHH-
Confidence            467899998 59999999998888999 6777776 44443332 222    2221 11111 1222333344444433 


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                      -+++|+++++.|.
T Consensus       102 ~g~iD~lv~nAg~  114 (281)
T 3v2h_A          102 FGGADILVNNAGV  114 (281)
T ss_dssp             TSSCSEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence            3479999999985

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.25  E-value=0.077  Score=45.14  Aligned_cols=46  Identities=22%  Similarity=0.158  Sum_probs=39.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCE
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  184 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~  184 (319)
                      .+|.|+|.|.+|......+...|. .|.+.++++++.+.+.+.|...
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~   53 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACG   53 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCcc
Confidence            579999999999999888888898 7889999999988888877644

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.25  E-value=0.03  Score=45.86  Aligned_cols=82  Identities=20%  Similarity=0.299  Sum_probs=51.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-----cCCCE-eeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-----LGADE-TAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-----~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      +++++||+| +|.+|..+++.+...|+ .|+++++++++.+.+.+     .+... .+..+- +.+++...+.++.+. -
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~   83 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL-V   83 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh-c
Confidence            467889998 59999999998888898 78888888766543322     23221 121121 222333333334332 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        84 ~~~d~vi~~Ag~   95 (248)
T 2pnf_A           84 DGIDILVNNAGI   95 (248)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.24  E-value=0.026  Score=47.34  Aligned_cols=90  Identities=12%  Similarity=0.228  Sum_probs=58.6

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCC--CEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGA--DETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~--~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .+++++|+|+|++|.+++..+...|+..|.+++++.++.+ ++++++.  ..+..+           .++.   ...+|+
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~-----------~~l~---~~~~Di  184 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRY-----------EALE---GQSFDI  184 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECS-----------GGGT---TCCCSE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeH-----------HHhc---ccCCCE
Confidence            5789999999999999999888899878888999888755 4445553  111111           0111   157999


Q ss_pred             EEEccCChHHHH----HHHHhhcCCCEEEEec
Q 020928          213 SFDCVGFDKTMS----TALNATRPGGKVCLIG  240 (319)
Q Consensus       213 v~d~~g~~~~~~----~~~~~l~~~G~~v~~g  240 (319)
                      ||+|++.. ...    .-...++++..++.+-
T Consensus       185 vInaTp~g-m~~~~~~i~~~~l~~~~~V~Dlv  215 (272)
T 3pwz_A          185 VVNATSAS-LTADLPPLPADVLGEAALAYELA  215 (272)
T ss_dssp             EEECSSGG-GGTCCCCCCGGGGTTCSEEEESS
T ss_pred             EEECCCCC-CCCCCCCCCHHHhCcCCEEEEee
Confidence            99998753 100    0123456666555554

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.24  E-value=0.029  Score=46.62  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=51.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCC-EeeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|.+|..+++.+...|+ +|+.+++++++.+.+ +++... ..+..+ .+.++....+.++.+.. +++|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~iD   83 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAF-GGLH   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            467899998 69999999998888898 688888887765543 334321 112112 12223333344443333 3799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|++.|.
T Consensus        84 ~lv~~Ag~   91 (260)
T 1nff_A           84 VLVNNAGI   91 (260)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999883

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.24  E-value=0.032  Score=46.33  Aligned_cols=82  Identities=26%  Similarity=0.392  Sum_probs=51.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-Hc---CCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL---GADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~---g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|.+|.++++.+...|+ .|+.+++++++.+.+. ++   +... .+..+ .+.++....+.++.+.. +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   83 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF-G   83 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh-C
Confidence            467899998 69999999998888998 6888888876654332 22   3221 12112 12223333333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        84 ~id~lv~nAg~   94 (262)
T 1zem_A           84 KIDFLFNNAGY   94 (262)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.23  E-value=0.025  Score=47.38  Aligned_cols=82  Identities=21%  Similarity=0.220  Sum_probs=51.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCC-EeeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|.+++..+...|+ +|+.+++++++.+.+.    +.+.. ..+..+ .+.++....+.++.+.. +
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g  104 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF-G  104 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHc-C
Confidence            467899998 69999999998888899 7888888877654332    23321 122222 22223333444443333 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus       105 ~iD~lvnnAg~  115 (270)
T 3ftp_A          105 ALNVLVNNAGI  115 (270)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.23  E-value=0.05  Score=43.70  Aligned_cols=92  Identities=13%  Similarity=0.152  Sum_probs=58.8

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +|||+| +|.+|..++..+...|. .|+++++++++.+.+...+... +..+-.+.+.    ..+     .++|+||++.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~-~~~D~~d~~~----~~~-----~~~d~vi~~a   70 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVAT-LVKEPLVLTE----ADL-----DSVDAVVDAL   70 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEE-EECCGGGCCH----HHH-----TTCSEEEECC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceE-EecccccccH----hhc-----ccCCEEEECC
Confidence            589998 59999999998888898 7888888887766543333322 2211111111    112     3689999999


Q ss_pred             CCh----------HHHHHHHHhhc-CCCEEEEecc
Q 020928          218 GFD----------KTMSTALNATR-PGGKVCLIGL  241 (319)
Q Consensus       218 g~~----------~~~~~~~~~l~-~~G~~v~~g~  241 (319)
                      |..          .....+++.++ .+++++.++.
T Consensus        71 g~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           71 SVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             CCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence            862          12344555553 3478888853

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.22  E-value=0.039  Score=45.73  Aligned_cols=82  Identities=16%  Similarity=0.243  Sum_probs=50.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCC-----------CEeeccCC-CCcchhHHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA-----------DETAKVST-DIEDVDTDVGK  201 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~-----------~~v~~~~~-~~~~~~~~i~~  201 (319)
                      .+.++||+| +|.+|..++..+...|+ .|+.+++++++.+.+. ++..           ...+..+- +.+++...+..
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            467899998 69999999998888898 7888888877655433 2311           11222121 12233333333


Q ss_pred             hhhhcCCCc-cEEEEccCC
Q 020928          202 IQNAMGSGI-DVSFDCVGF  219 (319)
Q Consensus       202 ~~~~~~~~~-d~v~d~~g~  219 (319)
                      +.+..+ .+ |++|++.|.
T Consensus        85 ~~~~~g-~i~d~vi~~Ag~  102 (264)
T 2pd6_A           85 VQACFS-RPPSVVVSCAGI  102 (264)
T ss_dssp             HHHHHS-SCCSEEEECCCC
T ss_pred             HHHHhC-CCCeEEEECCCc
Confidence            333233 56 999999874

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.22  E-value=0.021  Score=47.54  Aligned_cols=82  Identities=27%  Similarity=0.359  Sum_probs=51.5

Q ss_pred             CCCeEEEECC-C-HHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-Hc---CCCEe--eccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMGS-G-PIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL---GADET--AKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G~-g-~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~---g~~~v--~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      .++++||+|+ | ++|..++..+...|+ .|+.+++++++.+.+. ++   +...+  +..+ .+.++....+.++.+..
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            4688999985 6 799999998888898 6888888877654332 22   21122  2222 22223333444444333


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                       +.+|++|++.|.
T Consensus       100 -g~id~li~~Ag~  111 (266)
T 3o38_A          100 -GRLDVLVNNAGL  111 (266)
T ss_dssp             -SCCCEEEECCCC
T ss_pred             -CCCcEEEECCCc
Confidence             479999999984

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.21  E-value=0.013  Score=48.04  Aligned_cols=101  Identities=23%  Similarity=0.290  Sum_probs=60.0

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC-CCcchhHHHHHhhhhcC-CCcc
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST-DIEDVDTDVGKIQNAMG-SGID  211 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~i~~~~~~~~-~~~d  211 (319)
                      ..++++||+| +|.+|..+++.+...|+ +|+.+++++++.+     +....+..+- +.++....+.++.+..+ +++|
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc-----CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            4567899998 69999999998888898 6777777665422     1111111111 11222233333333222 5799


Q ss_pred             EEEEccCC--------h---H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          212 VSFDCVGF--------D---K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~--------~---~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ++|++.|.        .   +               ..+.+.+.++.+|+++.++.
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS  134 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGA  134 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECC
Confidence            99999883        1   0               12334445556789998875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.21  E-value=0.025  Score=47.23  Aligned_cols=105  Identities=13%  Similarity=0.109  Sum_probs=66.9

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +.+++|+|+|++|.+++..+...| ..|.+++++.++.+.+.+++.. ...+.    +       +    . .+|+||+|
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt~~ka~~la~~~~~-~~~~~----~-------l----~-~~DiVIna  179 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRSSRGLDFFQRLGCD-CFMEP----P-------K----S-AFDLIINA  179 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTTHHHHHHHTCE-EESSC----C-------S----S-CCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHCCCe-EecHH----H-------h----c-cCCEEEEc
Confidence            889999999999999999999999 5888899988876655477732 22221    1       1    1 68999998


Q ss_pred             cCCh-----HH-HHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEE
Q 020928          217 VGFD-----KT-MSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVI  261 (319)
Q Consensus       217 ~g~~-----~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~  261 (319)
                      ++..     .. ...+...++++..++.+...+ . +........++....
T Consensus       180 Tp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P-~-T~ll~~A~~~G~~~~  228 (269)
T 3phh_A          180 TSASLHNELPLNKEVLKGYFKEGKLAYDLAYGF-L-TPFLSLAKELKTPFQ  228 (269)
T ss_dssp             CTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS-C-CHHHHHHHHTTCCEE
T ss_pred             ccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC-c-hHHHHHHHHCcCEEE
Confidence            7642     01 122223567777777665433 2 223333444555443

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.21  E-value=0.019  Score=46.55  Aligned_cols=102  Identities=16%  Similarity=0.213  Sum_probs=66.9

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHc--CCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHhhh
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAF--GAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~--g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      .+.+++.+||-+|+|. |..++.+|+.+  +. +|++++.+++..+.+++    .|.. .-+.+.  ..+..+.+..+  
T Consensus        52 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~--~gda~~~l~~~--  125 (221)
T 3dr5_A           52 TNGNGSTGAIAITPAA-GLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRVRFL--LSRPLDVMSRL--  125 (221)
T ss_dssp             SCCTTCCEEEEESTTH-HHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE--CSCHHHHGGGS--
T ss_pred             hCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE--EcCHHHHHHHh--
Confidence            4455566999999887 88999999986  44 89999999988777765    3433 111111  12322222222  


Q ss_pred             hcCCCccEEEEccCCh---HHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFDCVGFD---KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g  240 (319)
                       ....||+||-.....   ..+..+.+.|+++|.++.-.
T Consensus       126 -~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          126 -ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             -CTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             -cCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence             145799997543322   35778889999999988643

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.20  E-value=0.038  Score=45.62  Aligned_cols=81  Identities=27%  Similarity=0.443  Sum_probs=50.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+++++++++.+.+    ++.+... .+..+- +.++....+.++.+.. +
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   89 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE-G   89 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc-C
Confidence            467899998 69999999998888898 788888887654322    2223221 122221 1222333333333322 4


Q ss_pred             CccEEEEccC
Q 020928          209 GIDVSFDCVG  218 (319)
Q Consensus       209 ~~d~v~d~~g  218 (319)
                      ++|++|++.|
T Consensus        90 ~id~vi~~Ag   99 (260)
T 3awd_A           90 RVDILVACAG   99 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999987

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.19  E-value=0.044  Score=46.47  Aligned_cols=81  Identities=14%  Similarity=0.229  Sum_probs=50.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc----CCCE-eeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL----GADE-TAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~----g~~~-v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      .+.++||+| +|.+|..++..+...|+ .|+.+++++++.+.+ +++    +... .+..+- +.++....+..+.+. .
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~  102 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV-A  102 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH-T
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH-c
Confidence            467899998 59999999998888898 688888887665432 222    4221 121121 222333333333332 3


Q ss_pred             CCccEEEEccC
Q 020928          208 SGIDVSFDCVG  218 (319)
Q Consensus       208 ~~~d~v~d~~g  218 (319)
                      +.+|++|++.|
T Consensus       103 g~id~li~~Ag  113 (302)
T 1w6u_A          103 GHPNIVINNAA  113 (302)
T ss_dssp             CSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999999988

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.19  E-value=0.02  Score=51.79  Aligned_cols=94  Identities=22%  Similarity=0.226  Sum_probs=68.8

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      --.|.+|.|+|.|.+|..+++.++.+|+ +|++.+++..+.......|... .       +    +.++.    ...|+|
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~~-~-------~----l~ell----~~aDiV  316 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFNV-V-------T----LDEIV----DKGDFF  316 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCEE-C-------C----HHHHT----TTCSEE
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCEe-c-------C----HHHHH----hcCCEE
Confidence            4578999999999999999999999999 7999998887754444555421 1       1    22221    358999


Q ss_pred             EEccCChHHH-HHHHHhhcCCCEEEEecccCC
Q 020928          214 FDCVGFDKTM-STALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       214 ~d~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~  244 (319)
                      +-+.+....+ ...++.|+++..++.++....
T Consensus       317 i~~~~t~~lI~~~~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          317 ITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             EECCSSSSSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred             EECCChhhhcCHHHHhhcCCCcEEEEeCCCCc
Confidence            9887665433 356788999999999986443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.19  E-value=0.022  Score=44.39  Aligned_cols=101  Identities=20%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCC-CEeeccCCCCcchhHHHHHhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGA-DETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      +....+.++.+||.+|+|. |..+..+++..  ..+++++.+++..+.+++    .+. ..+...   ..+..+.   +.
T Consensus        26 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~---~~   96 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM---EGDAPEA---LC   96 (192)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEE---ESCHHHH---HT
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEE---ecCHHHh---cc
Confidence            4556788999999999887 88888888866  489999999988877765    333 111111   1122221   11


Q ss_pred             hhcCCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEec
Q 020928          204 NAMGSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                        ....+|+|+.....   ...+..+.+.|+++|+++...
T Consensus        97 --~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A           97 --KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             --TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --cCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence              11479999865431   346778888999999988754

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.19  E-value=0.015  Score=51.04  Aligned_cols=92  Identities=13%  Similarity=0.210  Sum_probs=66.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|..+++.++.+|.++|++.+++..+.+..+++|+..+   .    +    +.++.    ...|+|+.
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~---~----~----l~ell----~~aDvV~l  227 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRV---E----N----IEELV----AQADIVTV  227 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEEC---S----S----HHHHH----HTCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEec---C----C----HHHHH----hcCCEEEE
Confidence            57899999999999999999999998438888887766666677774321   0    1    12222    25799998


Q ss_pred             ccCChH----HH-HHHHHhhcCCCEEEEeccc
Q 020928          216 CVGFDK----TM-STALNATRPGGKVCLIGLA  242 (319)
Q Consensus       216 ~~g~~~----~~-~~~~~~l~~~G~~v~~g~~  242 (319)
                      ++....    .+ ...+..|++++.++.++..
T Consensus       228 ~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG  259 (364)
T 2j6i_A          228 NAPLHAGTKGLINKELLSKFKKGAWLVNTARG  259 (364)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTEEEEECSCG
T ss_pred             CCCCChHHHHHhCHHHHhhCCCCCEEEECCCC
Confidence            887531    12 3566789999999988764

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.19  E-value=0.049  Score=46.04  Aligned_cols=98  Identities=14%  Similarity=0.178  Sum_probs=66.4

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHhhhhcC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++.+||-+|+|. |..+..+++..|. .+++++.++...+.+++    .+.. .+.....   ++..    +. ...
T Consensus        79 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~----~~-~~~  148 (297)
T 2o57_A           79 VLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG---SFLE----IP-CED  148 (297)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC---CTTS----CS-SCT
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEc---Cccc----CC-CCC
Confidence            788999999999875 8888889888787 89999999987776654    2321 1111111   1100    10 013


Q ss_pred             CCccEEEEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSFDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+|+|+....-      ...+..+.+.|+|+|+++...
T Consensus       149 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          149 NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            569999864332      246888999999999998765

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.19  E-value=0.019  Score=47.27  Aligned_cols=79  Identities=22%  Similarity=0.339  Sum_probs=49.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .++++||+| +|.+|..+++.+...|+ +|+.+++++++.+.+.++.-...+..+-.+.   +.+.++.+. -+++|++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~-~~~id~lv   79 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTKK---KQIDQFANE-VERLDVLF   79 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTCH---HHHHHHHHH-CSCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCCH---HHHHHHHHH-hCCCCEEE
Confidence            467899998 59999999998888898 7888888876655433332112222221111   223333332 24799999


Q ss_pred             EccCC
Q 020928          215 DCVGF  219 (319)
Q Consensus       215 d~~g~  219 (319)
                      ++.|.
T Consensus        80 ~~Ag~   84 (246)
T 2ag5_A           80 NVAGF   84 (246)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99884

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.16  E-value=0.027  Score=46.76  Aligned_cols=82  Identities=23%  Similarity=0.341  Sum_probs=51.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCCE-eeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADE-TAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+++++++++.+ ..++++... .+..+- +.++....+.++.+.. +++|
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~id   88 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKF-GRVD   88 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHC-CCCC
Confidence            467899998 69999999998888898 6777777765544 344455322 222221 2223333344343322 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|++.|.
T Consensus        89 ~li~~Ag~   96 (265)
T 2o23_A           89 VAVNCAGI   96 (265)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999873

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.15  E-value=0.026  Score=47.03  Aligned_cols=82  Identities=18%  Similarity=0.218  Sum_probs=49.1

Q ss_pred             CCCeEEEEC-C--CHHHHHHHHHHHHcCCCeEEEecCCh---hHHHHHH-HcCCCEeeccCCC-CcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDV---QRLSIAR-NLGADETAKVSTD-IEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~--g~vG~~ai~la~~~g~~~vv~v~~~~---~~~~~~~-~~g~~~v~~~~~~-~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +  |.+|.++++.+...|+ .|+.+++++   +..+.+. +.+....+..+-. .++....+.++.+. -
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~   85 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV-W   85 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT-C
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHH-c
Confidence            467899998 5  7999999998888898 677777765   2222222 2332222222222 22333333333332 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        86 g~iD~lv~~Ag~   97 (265)
T 1qsg_A           86 PKFDGFVHSIGF   97 (265)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999873

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=96.15  E-value=0.077  Score=47.53  Aligned_cols=108  Identities=14%  Similarity=0.156  Sum_probs=68.1

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-----------HHcC--CCEeeccCCCCcc
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-----------RNLG--ADETAKVSTDIED  194 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-----------~~~g--~~~v~~~~~~~~~  194 (319)
                      .++...++++++||=+|+|. |..++.+|+..|...|++++.++...+.+           +.+|  ...+......  +
T Consensus       234 ml~~l~l~~g~~VLDLGCGs-G~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD--~  310 (433)
T 1u2z_A          234 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK--S  310 (433)
T ss_dssp             HHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS--C
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC--c
Confidence            34557788999999999886 88999999988876899999998865544           3345  2222111111  1


Q ss_pred             hhHHHHHhhhhcCCCccEEEEc--cCCh---HHHHHHHHhhcCCCEEEEec
Q 020928          195 VDTDVGKIQNAMGSGIDVSFDC--VGFD---KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       195 ~~~~i~~~~~~~~~~~d~v~d~--~g~~---~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +.... .+.. ....+|+|+-.  ...+   ..+..+.+.|+++|+++...
T Consensus       311 ~~~~~-~~~~-~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          311 FVDNN-RVAE-LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             STTCH-HHHH-HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccc-cccc-ccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence            11000 0100 12468999852  2223   23457788999999999874

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.15  E-value=0.012  Score=48.23  Aligned_cols=99  Identities=19%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCC-CcchhHHHHHhhhhcC-CCccEE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTD-IEDVDTDVGKIQNAMG-SGIDVS  213 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~i~~~~~~~~-~~~d~v  213 (319)
                      ++++||+| +|.+|..+++.+...|+ +|+.+++++++.+     +....+..+-. .++....+.++.+..+ +++|++
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~l   76 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   76 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCccccc-----cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEE
Confidence            56889998 69999999998888898 6777877665421     11111111111 1122223333333222 479999


Q ss_pred             EEccCC--------h---H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          214 FDCVGF--------D---K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       214 ~d~~g~--------~---~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      |++.|.        .   +               ..+.+.+.+..+|+++.++.
T Consensus        77 v~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  130 (236)
T 1ooe_A           77 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGA  130 (236)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECc
Confidence            999983        1   0               12344555656789998875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.15  E-value=0.08  Score=45.35  Aligned_cols=92  Identities=20%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      .+|.|+|.|.+|...++.++..|.. .|++.++++++.+.+++.|......  .   +..+.   .    -.+.|+||-|
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~--~---~~~~~---~----~~~aDvVila  101 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGT--T---SIAKV---E----DFSPDFVMLS  101 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEE--S---CTTGG---G----GGCCSEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhc--C---CHHHH---h----hccCCEEEEe
Confidence            6899999999999999988888873 6888999999999888888531110  1   11110   1    1357899988


Q ss_pred             cCChH---HHHHHHHhhcCCCEEEEecc
Q 020928          217 VGFDK---TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       217 ~g~~~---~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +....   .+..+...++++..++.++.
T Consensus       102 vp~~~~~~vl~~l~~~l~~~~iv~d~~S  129 (314)
T 3ggo_A          102 SPVRTFREIAKKLSYILSEDATVTDQGS  129 (314)
T ss_dssp             SCGGGHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             CCHHHHHHHHHHHhhccCCCcEEEECCC
Confidence            87642   33445556677777776654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.15  E-value=0.032  Score=45.31  Aligned_cols=78  Identities=18%  Similarity=0.165  Sum_probs=49.3

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCE-eeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADE-TAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~-v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      +++||+| +|++|.+++..+...|+ .|+.+++++++.+.+.+ ++... .+..+-.  + .+.+.++.+.....+|+++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~--~-~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLA--S-HQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTT--C-HHHHHHHHHSCSSCCSEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCC--C-HHHHHHHHHHHhhcCCEEE
Confidence            3689998 69999999998888998 58888888877665544 43211 1111111  1 2234444433344569999


Q ss_pred             EccCC
Q 020928          215 DCVGF  219 (319)
Q Consensus       215 d~~g~  219 (319)
                      ++.|.
T Consensus        78 ~~Ag~   82 (230)
T 3guy_A           78 HSAGS   82 (230)
T ss_dssp             ECCCC
T ss_pred             EeCCc
Confidence            99884

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.14  E-value=0.047  Score=46.82  Aligned_cols=102  Identities=24%  Similarity=0.261  Sum_probs=66.2

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ...+++++++||=.|+|+ |..++++++..+ ...|++++.++.+.+.+++    +|...+.....   |...    +..
T Consensus       112 ~~l~~~~g~~VLDlg~G~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~---D~~~----~~~  183 (315)
T 1ixk_A          112 VALDPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS---SSLH----IGE  183 (315)
T ss_dssp             HHHCCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS---CGGG----GGG
T ss_pred             HHhCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEEC---Chhh----ccc
Confidence            345788999999888766 667778888763 2389999999998877765    35433222222   2111    111


Q ss_pred             hcCCCccEEEE---ccCC-------------------------hHHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFD---CVGF-------------------------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                       ....+|.|+-   |.|.                         ...+..+.+.|+++|+++...
T Consensus       184 -~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          184 -LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             -GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence             1346999874   2221                         246678889999999998643

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.14  E-value=0.0088  Score=50.35  Aligned_cols=98  Identities=13%  Similarity=0.111  Sum_probs=65.9

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC------C--CEeeccCCCCcchhHHHHHhhhhc
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG------A--DETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g------~--~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .++.+||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-      .  ..+...   ..|....+..    .
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~---~~D~~~~l~~----~  145 (275)
T 1iy9_A           74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQ---VDDGFMHIAK----S  145 (275)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEE---ESCSHHHHHT----C
T ss_pred             CCCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEE---ECcHHHHHhh----C
Confidence            4578999998775 677778888767668999999999888887631      1  111111   1122222221    2


Q ss_pred             CCCccEEEEccCC----------hHHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSFDCVGF----------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...+|+|+-....          .+.++.+.+.|+++|.++.-.
T Consensus       146 ~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            4579998764432          357889999999999998753

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.14  E-value=0.021  Score=47.37  Aligned_cols=82  Identities=17%  Similarity=0.203  Sum_probs=50.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---CCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---GADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|..+++.+...|+ +|+.+++++++.+.+ +++   +... .+..+ .+.++....+..+.+...+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   82 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG   82 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            467889998 69999999998888898 688888887665433 222   3221 12112 1222333333333322135


Q ss_pred             CccEEEEccC
Q 020928          209 GIDVSFDCVG  218 (319)
Q Consensus       209 ~~d~v~d~~g  218 (319)
                      .+|+++++.|
T Consensus        83 ~id~lvnnAg   92 (260)
T 2qq5_A           83 RLDVLVNNAY   92 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CceEEEECCc
Confidence            7999999994

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.12  E-value=0.035  Score=46.51  Aligned_cols=82  Identities=15%  Similarity=0.178  Sum_probs=49.5

Q ss_pred             CCCeEEEEC-C--CHHHHHHHHHHHHcCCCeEEEecCChh---HHHHHH-HcCCCEeeccCCC-CcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQ---RLSIAR-NLGADETAKVSTD-IEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~--g~vG~~ai~la~~~g~~~vv~v~~~~~---~~~~~~-~~g~~~v~~~~~~-~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +  |++|.++++.+...|+ +|+.++++++   ..+.++ +.+....+..+-. .++....+.++.+. .
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~   82 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD-L   82 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH-T
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence            467899998 5  7999999998888898 6777777664   222222 2342222222222 22333333333332 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        83 g~id~lv~nAg~   94 (275)
T 2pd4_A           83 GSLDFIVHSVAF   94 (275)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999873

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.12  E-value=0.033  Score=46.64  Aligned_cols=82  Identities=13%  Similarity=0.069  Sum_probs=49.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-ChhHHHHH-HHc----CCCE-eeccCC-CC----cchhHHHHHh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA-RNL----GADE-TAKVST-DI----EDVDTDVGKI  202 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-~~~~~~~~-~~~----g~~~-v~~~~~-~~----~~~~~~i~~~  202 (319)
                      .+.++||+| +|++|.+++..+...|+ .|+.+++ ++++.+.+ +++    +... .+..+- +.    ++....+.++
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence            467899998 69999999998888898 6888877 76654433 222    4221 121121 22    2333333333


Q ss_pred             hhhcCCCccEEEEccCC
Q 020928          203 QNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~  219 (319)
                      .+.. +++|++|++.|.
T Consensus        89 ~~~~-g~id~lv~nAg~  104 (276)
T 1mxh_A           89 FRAF-GRCDVLVNNASA  104 (276)
T ss_dssp             HHHH-SCCCEEEECCCC
T ss_pred             HHhc-CCCCEEEECCCC
Confidence            3322 479999999884

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.11  E-value=0.035  Score=46.58  Aligned_cols=82  Identities=18%  Similarity=0.253  Sum_probs=52.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HH----cCCCE-eeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RN----LGADE-TAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~----~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.++++.++.+.+ ++    .+... .+..+ .+.++....+.++.+.. 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-  103 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF-  103 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            568999998 69999999998888899 788888887654332 22    23222 12112 22223333444444333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus       104 g~id~lv~nAg~  115 (277)
T 4fc7_A          104 GRIDILINCAAG  115 (277)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcC
Confidence            479999999983

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.11  E-value=0.17  Score=38.07  Aligned_cols=96  Identities=11%  Similarity=0.094  Sum_probs=58.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC-hhHHHHHHH-c--CCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD-VQRLSIARN-L--GADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~-~~~~~~~~~-~--g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ...+++|+|+|.+|...++.+...|. .|++++++ +++.+.+++ +  |. .++.-+..+.   +.+.+   ..-.++|
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~-~~i~gd~~~~---~~l~~---a~i~~ad   73 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNA-DVIPGDSNDS---SVLKK---AGIDRCR   73 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTC-EEEESCTTSH---HHHHH---HTTTTCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCC-eEEEcCCCCH---HHHHH---cChhhCC
Confidence            35679999999999999999998998 67888776 455544443 2  33 2222222211   12222   1234789


Q ss_pred             EEEEccCChHH---HHHHHHhhcCCCEEEEe
Q 020928          212 VSFDCVGFDKT---MSTALNATRPGGKVCLI  239 (319)
Q Consensus       212 ~v~d~~g~~~~---~~~~~~~l~~~G~~v~~  239 (319)
                      .|+-+++.++.   .....+.+.+..+++..
T Consensus        74 ~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           74 AILALSDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             EEEEecCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            99999987632   22334445455566543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.10  E-value=0.023  Score=47.37  Aligned_cols=98  Identities=21%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHc---CCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAF---GAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~---g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      .++++.+||-+|+|. |..+..+++..   |+ +|++++.+++-.+.+++    .+...-+.+..  .|    +.++   
T Consensus        67 ~~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~--~D----~~~~---  135 (261)
T 4gek_A           67 FVQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE--GD----IRDI---  135 (261)
T ss_dssp             HCCTTCEEEEETCTT-THHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE--SC----TTTC---
T ss_pred             hCCCCCEEEEEeCCC-CHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEee--cc----cccc---
Confidence            388999999999876 78888888875   45 79999999988777765    23221111110  11    1111   


Q ss_pred             cCCCccEEEEccCC-----h---HHHHHHHHhhcCCCEEEEecc
Q 020928          206 MGSGIDVSFDCVGF-----D---KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       206 ~~~~~d~v~d~~g~-----~---~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ....+|+|+-...-     +   ..+..+.+.|+|||+++....
T Consensus       136 ~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          136 AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence            12458887654321     1   357888999999999987653

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.10  E-value=0.063  Score=47.60  Aligned_cols=107  Identities=15%  Similarity=0.080  Sum_probs=68.4

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-----------cCC--CEeeccCCCCcc
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-----------LGA--DETAKVSTDIED  194 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-----------~g~--~~v~~~~~~~~~  194 (319)
                      .+...+++++++||=+|+|. |..++++|+..|+.++++++.++.-.+++++           +|.  ..+-....   |
T Consensus       165 il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G---D  240 (438)
T 3uwp_A          165 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG---D  240 (438)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC---C
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC---c
Confidence            34668899999999999887 8889999998898779999999865554443           342  23222111   2


Q ss_pred             hhHHHHHhhhhcCCCccEEEEccC--Ch---HHHHHHHHhhcCCCEEEEecc
Q 020928          195 VDTDVGKIQNAMGSGIDVSFDCVG--FD---KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       195 ~~~~i~~~~~~~~~~~d~v~d~~g--~~---~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +.+.-  +.. .-..+|+||-..-  .+   ..+...++.|++||+++....
T Consensus       241 ~~~lp--~~d-~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~  289 (438)
T 3uwp_A          241 FLSEE--WRE-RIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP  289 (438)
T ss_dssp             TTSHH--HHH-HHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred             ccCCc--ccc-ccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeec
Confidence            21110  100 0125899884211  12   245567788999999998753

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.10  E-value=0.057  Score=44.07  Aligned_cols=78  Identities=18%  Similarity=0.133  Sum_probs=50.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      ++.++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+.+ ......+..+-.  + .+.+.++.+. -+.+|++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~--~-~~~~~~~~~~-~~~id~v   80 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLG--D-WDATEKALGG-IGPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTT--C-HHHHHHHHTT-CCCCSEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCCcEEecCC--C-HHHHHHHHHH-cCCCCEE
Confidence            467899998 59999999998888898 68888888776554433 322222222221  1 1233333331 2468999


Q ss_pred             EEccC
Q 020928          214 FDCVG  218 (319)
Q Consensus       214 ~d~~g  218 (319)
                      |++.|
T Consensus        81 i~~Ag   85 (244)
T 1cyd_A           81 VNNAA   85 (244)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99988

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.09  E-value=0.036  Score=45.99  Aligned_cols=82  Identities=16%  Similarity=0.315  Sum_probs=49.3

Q ss_pred             CCCeEEEEC-C--CHHHHHHHHHHHHcCCCeEEEecCChh---HHHHHH-HcCCCEeeccCCC-CcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQ---RLSIAR-NLGADETAKVSTD-IEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~--g~vG~~ai~la~~~g~~~vv~v~~~~~---~~~~~~-~~g~~~v~~~~~~-~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +  |.+|..+++.+...|+ +|+.++++++   ..+.+. +.+....+..+-. .++....+.++.+.. 
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-   84 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF-   84 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            467899998 5  7999999987777898 6777777764   222222 2342222222222 223333333333322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        85 g~iD~lv~~Ag~   96 (261)
T 2wyu_A           85 GGLDYLVHAIAF   96 (261)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.09  E-value=0.03  Score=46.13  Aligned_cols=82  Identities=13%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-H---HcCCCE-eeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-R---NLGADE-TAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~---~~g~~~-v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      .+.++||+| +|.+|..+++.+...|+ .|+++++++++.+.+ +   +.+... .+..+-. .+++...+.++.+.. +
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   87 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-G   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc-C
Confidence            467899998 59999999998888898 788888887664432 2   223221 1211211 222233333333222 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        88 ~~d~vi~~Ag~   98 (255)
T 1fmc_A           88 KVDILVNNAGG   98 (255)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.08  E-value=0.027  Score=47.18  Aligned_cols=73  Identities=15%  Similarity=0.315  Sum_probs=50.6

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      ++.+++|+|+|++|.++++.+...|. .|++++++.++.+ ++++++.....+..    ++    ..+.+   .++|+++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~----~~----~~~~~---~~~DivV  185 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQAL----SM----DELEG---HEFDLII  185 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEEC----CS----GGGTT---CCCSEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEe----cH----HHhcc---CCCCEEE
Confidence            57899999999999999999999996 7888889887754 44555431101110    11    11211   4799999


Q ss_pred             EccCCh
Q 020928          215 DCVGFD  220 (319)
Q Consensus       215 d~~g~~  220 (319)
                      ++++..
T Consensus       186 n~t~~~  191 (271)
T 1nyt_A          186 NATSSG  191 (271)
T ss_dssp             ECCSCG
T ss_pred             ECCCCC
Confidence            999965

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.08  E-value=0.063  Score=44.22  Aligned_cols=104  Identities=14%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHc--CCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAF--GAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~--g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      ...++++||-+|+|. |..++.+|+.+  +. ++++++.+++..+.+++    .|...-+.+.  ..+..+.+..+....
T Consensus        76 ~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~--~gda~~~l~~l~~~~  151 (247)
T 1sui_A           76 KLINAKNTMEIGVYT-GYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFR--EGPALPVLDEMIKDE  151 (247)
T ss_dssp             HHTTCCEEEEECCGG-GHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEE--ESCHHHHHHHHHHSG
T ss_pred             HhhCcCEEEEeCCCc-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEE--ECCHHHHHHHHHhcc
Confidence            345678999999876 88888999986  44 89999999988777765    3432111111  123333333332111


Q ss_pred             --CCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEec
Q 020928          207 --GSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 --~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                        ...||+||-....   ...+..+.+.|+++|.++.-.
T Consensus       152 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          152 KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             GGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             CCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence              3579999753322   246778889999999988643

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.08  E-value=0.038  Score=45.56  Aligned_cols=105  Identities=18%  Similarity=0.183  Sum_probs=61.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh--hHHHHHHHc-CCCEe--eccCCC-C-cchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSIARNL-GADET--AKVSTD-I-EDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~--~~~~~~~~~-g~~~v--~~~~~~-~-~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +|.+|..+++.+...|+++|+.+++++  +..+.+++. +...+  +..+-. . ++....+.++.+.. 
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-   82 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL-   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH-
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc-
Confidence            367899998 699999999988888985477776664  333333332 11121  222222 2 23333344443322 


Q ss_pred             CCccEEEEccCCh-----------------HHHHHHHHhhcC-----CCEEEEecc
Q 020928          208 SGIDVSFDCVGFD-----------------KTMSTALNATRP-----GGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~-----------------~~~~~~~~~l~~-----~G~~v~~g~  241 (319)
                      +++|++|++.|..                 ...+.+.+.+..     .|+++.+++
T Consensus        83 g~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  138 (254)
T 1sby_A           83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence            4799999999841                 123344455532     588998875

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.07  E-value=0.045  Score=45.94  Aligned_cols=82  Identities=24%  Similarity=0.376  Sum_probs=50.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC------------hhHHH----HHHHcCCCEe-eccC-CCCcchh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD------------VQRLS----IARNLGADET-AKVS-TDIEDVD  196 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~------------~~~~~----~~~~~g~~~v-~~~~-~~~~~~~  196 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.++++            .++.+    .+++.+.... +..+ .+.++..
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   87 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            468999998 69999999998888999 67777775            22222    2233443221 1112 2222333


Q ss_pred             HHHHHhhhhcCCCccEEEEccCC
Q 020928          197 TDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       197 ~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      ..+.++.+.. +++|+++++.|.
T Consensus        88 ~~~~~~~~~~-g~id~lv~nAg~  109 (281)
T 3s55_A           88 SFVAEAEDTL-GGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHH-TCCCEEEECCCC
T ss_pred             HHHHHHHHhc-CCCCEEEECCCC
Confidence            3444443333 479999999984

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.07  E-value=0.026  Score=47.60  Aligned_cols=79  Identities=20%  Similarity=0.244  Sum_probs=49.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEe--eccCCCC-cchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADET--AKVSTDI-EDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v--~~~~~~~-~~~~~~i~~~~~~~~  207 (319)
                      ++.++||+| +|++|..+++.+...|+ .|+.+++++++.+.+.    +.+...+  +..+-.+ ++....+.++.+.. 
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~-  104 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM-  104 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHc-
Confidence            367899998 59999999998888898 7888888887655432    2343222  2222121 22223333333222 


Q ss_pred             CCccEEEEc
Q 020928          208 SGIDVSFDC  216 (319)
Q Consensus       208 ~~~d~v~d~  216 (319)
                      +++|++|++
T Consensus       105 g~iD~li~n  113 (286)
T 1xu9_A          105 GGLDMLILN  113 (286)
T ss_dssp             TSCSEEEEC
T ss_pred             CCCCEEEEC
Confidence            479999998

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.06  E-value=0.054  Score=45.09  Aligned_cols=102  Identities=17%  Similarity=0.204  Sum_probs=67.8

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCC-EeeccCCCCcchhHHHHHhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GAD-ETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~i~~~~  203 (319)
                      ++...++++.+||-+|+|. |..+..+++..+. .+++++.+++..+.+++.    +.. .+.....   +..    .+.
T Consensus        54 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~---d~~----~~~  124 (273)
T 3bus_A           54 IALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYA---DAM----DLP  124 (273)
T ss_dssp             HHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC---CTT----SCC
T ss_pred             HHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC---ccc----cCC
Confidence            3557788999999999887 8888899988887 899999999887776652    321 1111111   110    010


Q ss_pred             hhcCCCccEEEEccC-----C-hHHHHHHHHhhcCCCEEEEec
Q 020928          204 NAMGSGIDVSFDCVG-----F-DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g  240 (319)
                       .....+|+|+..-.     . ...+..+.+.|+++|+++...
T Consensus       125 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          125 -FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             -SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence             01356999974321     1 246778888999999988665

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.06  E-value=0.073  Score=44.87  Aligned_cols=87  Identities=14%  Similarity=0.126  Sum_probs=57.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      .+|.|+|+|.+|....+.+...|. .|++.++++++.+.+.+.|....       .+..+.+        .+.|+||-|+
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~--------~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAERA-------ATPCEVV--------ESCPVTFAML   65 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC-------SSHHHHH--------HHCSEEEECC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec-------CCHHHHH--------hcCCEEEEEc
Confidence            478999999999999998888898 78889999998888777664321       0111111        1357777777


Q ss_pred             CChHHHHHHH-------HhhcCCCEEEEec
Q 020928          218 GFDKTMSTAL-------NATRPGGKVCLIG  240 (319)
Q Consensus       218 g~~~~~~~~~-------~~l~~~G~~v~~g  240 (319)
                      ..+......+       +.++++..++.++
T Consensus        66 p~~~~~~~v~~~~~~l~~~l~~~~~vi~~s   95 (287)
T 3pef_A           66 ADPAAAEEVCFGKHGVLEGIGEGRGYVDMS   95 (287)
T ss_dssp             SSHHHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCCEEEeCC
Confidence            7543333333       4556666665554

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.06  E-value=0.025  Score=46.88  Aligned_cols=82  Identities=17%  Similarity=0.219  Sum_probs=47.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCC-EeeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+ ..++++.. ..+..+ .+.++....+.++.+.. +++|
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id   83 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEF-GHVH   83 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHc-CCCC
Confidence            467899998 69999999998888899 6777777766544 33344421 112112 12223333444443332 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus        84 ~lv~nAg~   91 (257)
T 3tpc_A           84 GLVNCAGT   91 (257)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.05  E-value=0.024  Score=45.98  Aligned_cols=106  Identities=20%  Similarity=0.274  Sum_probs=68.5

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .+..++.+||-+|+| .|..++.+++..+ ..++++++.+++..+.+++.    |....+.+.  ..+..+.+..+....
T Consensus        65 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~--~~d~~~~~~~~~~~~  141 (229)
T 2avd_A           65 ARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLR--LKPALETLDELLAAG  141 (229)
T ss_dssp             HHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEE--ESCHHHHHHHHHHTT
T ss_pred             HHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEE--EcCHHHHHHHHHhcC
Confidence            345678899999988 4888999998763 34899999999887777652    432111111  123333333332110


Q ss_pred             -CCCccEEEEccCCh---HHHHHHHHhhcCCCEEEEec
Q 020928          207 -GSGIDVSFDCVGFD---KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 -~~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g  240 (319)
                       ...+|+||-.....   ..+..+.+.|+++|.++...
T Consensus       142 ~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          142 EAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence             15799987544322   46788889999999998754

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.05  E-value=0.042  Score=46.29  Aligned_cols=82  Identities=12%  Similarity=0.166  Sum_probs=49.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HH---cCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RN---LGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~---~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .+.++||+| +|.+|..++..+...|+ .|+++++++++.+.+ ++   .+... .+..+ .+.+++...+.++.+. .+
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~-~~  120 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE-HK  120 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH-CS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHh-cC
Confidence            367899998 69999999998888898 677777776654432 22   24322 12112 1222333333333332 34


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus       121 ~id~li~~Ag~  131 (285)
T 2c07_A          121 NVDILVNNAGI  131 (285)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.04  E-value=0.036  Score=45.53  Aligned_cols=82  Identities=20%  Similarity=0.347  Sum_probs=49.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-ChhHHHHH-H---HcCCCE-eeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA-R---NLGADE-TAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-~~~~~~~~-~---~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+.+++ ++++.+.+ +   +.+... .+..+ .+.++....+.++.+.. 
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   80 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF-   80 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            367899998 59999999998888898 6777766 66554332 2   234322 12112 12223333344443322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        81 g~id~lv~nAg~   92 (246)
T 2uvd_A           81 GQVDILVNNAGV   92 (246)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=96.04  E-value=0.066  Score=42.92  Aligned_cols=100  Identities=12%  Similarity=0.166  Sum_probs=62.7

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHH----HHHHcCCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS----IARNLGADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~----~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      ..++++++||=+|+|. |..+..+++..+...|++++.++...+    .+++..  .+.....+..+.    ..... ..
T Consensus        53 ~~~~~g~~VLDlGcGt-G~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~--~v~~~~~d~~~~----~~~~~-~~  124 (210)
T 1nt2_A           53 LKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKP----WKYSG-IV  124 (210)
T ss_dssp             CCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCG----GGTTT-TC
T ss_pred             cCCCCCCEEEEECCcC-CHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC--CeEEEEcCCCCc----hhhcc-cc
Confidence            4578999999999876 778888888875338999999987433    333322  111111111110    00000 12


Q ss_pred             CCccEEEEccCChH----HHHHHHHhhcCCCEEEEe
Q 020928          208 SGIDVSFDCVGFDK----TMSTALNATRPGGKVCLI  239 (319)
Q Consensus       208 ~~~d~v~d~~g~~~----~~~~~~~~l~~~G~~v~~  239 (319)
                      ..+|+|+-.+..+.    .+..+.+.|+++|+++..
T Consensus       125 ~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          125 EKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            46999987655432    256788899999999876

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.03  E-value=0.039  Score=45.62  Aligned_cols=100  Identities=19%  Similarity=0.266  Sum_probs=66.6

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      +....+++.+||-+|+|. |..+..+++.. . .+++++.+++..+.+++.    +...+........+       +. .
T Consensus        31 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~-~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-------l~-~   99 (260)
T 1vl5_A           31 QIAALKGNEEVLDVATGG-GHVANAFAPFV-K-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ-------MP-F   99 (260)
T ss_dssp             HHHTCCSCCEEEEETCTT-CHHHHHHGGGS-S-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C-------CC-S
T ss_pred             HHhCCCCCCEEEEEeCCC-CHHHHHHHHhC-C-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh-------CC-C
Confidence            445678999999999874 77887887764 3 899999999888777653    32211111111111       10 0


Q ss_pred             cCCCccEEEEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+|+....-      ...+..+.+.|+|+|+++...
T Consensus       100 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          100 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            23579999876443      246788999999999998764

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.03  E-value=0.022  Score=46.96  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=63.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh--hHHHHHHHcCCCEe-eccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSIARNLGADET-AKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~--~~~~~~~~~g~~~v-~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .|+++||+| ++++|.+..+.+...|+ +|+.++++.  +..+.+++.|.... +..+-.+++   .++.+.+  .+++|
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~---~v~~~~~--~g~iD   81 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFADPL---AAKDSFT--DAGFD   81 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTT---TTTTSST--TTCCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHH---HHHHHHH--hCCCC
Confidence            478889987 69999999999999999 677777653  44566666664332 111111111   2222222  35799


Q ss_pred             EEEEccCCh----------H---------------HHHHHHHhhc---CCCEEEEecc
Q 020928          212 VSFDCVGFD----------K---------------TMSTALNATR---PGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~----------~---------------~~~~~~~~l~---~~G~~v~~g~  241 (319)
                      +++++.|..          +               ..+...+.|.   .+|+++.+++
T Consensus        82 iLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS  139 (247)
T 4hp8_A           82 ILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIAS  139 (247)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            999999863          0               2344555552   4689999875

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.02  E-value=0.039  Score=45.73  Aligned_cols=82  Identities=15%  Similarity=0.193  Sum_probs=50.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-H---HcCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-R---NLGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~---~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|.+|.++++.+...|+ .|+.+++++++.+.+ +   +.+... .+..+ .+.++....+.++.+.. +
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   90 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLH-G   90 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            467899998 69999999998888898 788888887654432 2   223221 11111 11223333333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        91 ~iD~lv~~Ag~  101 (260)
T 2zat_A           91 GVDILVSNAAV  101 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.02  E-value=0.041  Score=47.15  Aligned_cols=89  Identities=19%  Similarity=0.210  Sum_probs=64.4

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++++. .++++|+...        +..    ++.    ...|+|+-
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~~--------~l~----ell----~~aDvVvl  202 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKAV--------SLE----ELL----KNSDVISL  202 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEEC--------CHH----HHH----HHCSEEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCceec--------CHH----HHH----hhCCEEEE
Confidence            57899999999999999999999998 788888877664 3566775321        111    122    24789998


Q ss_pred             ccCChH----HH-HHHHHhhcCCCEEEEeccc
Q 020928          216 CVGFDK----TM-STALNATRPGGKVCLIGLA  242 (319)
Q Consensus       216 ~~g~~~----~~-~~~~~~l~~~G~~v~~g~~  242 (319)
                      ++....    .+ ...+..|++++.++.++..
T Consensus       203 ~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg  234 (313)
T 2ekl_A          203 HVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA  234 (313)
T ss_dssp             CCCCCTTSCCSBCHHHHHHSCTTEEEEESSCG
T ss_pred             eccCChHHHHhhCHHHHhcCCCCCEEEECCCC
Confidence            887432    12 4567889999989888763

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.01  E-value=0.014  Score=50.14  Aligned_cols=99  Identities=13%  Similarity=0.127  Sum_probs=64.4

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-------EeeccCCCCcchhHHHHHhhhhcC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-------ETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-------~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      +++.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.-..       .-+.+  ...|....+..    ..
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~--~~~D~~~~l~~----~~  179 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDL--FCGDGFEFLKN----HK  179 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEE--ECSCHHHHHHH----CT
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEE--EEChHHHHHHh----cC
Confidence            4568999999776 77777888876555899999999999888873211       00111  11233222221    24


Q ss_pred             CCccEEEEccCC----------hHHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSFDCVGF----------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+|+|+-....          .+.++.+.+.|+++|.++.-.
T Consensus       180 ~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          180 NEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             TCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            579999854421          346788899999999988754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.01  E-value=0.11  Score=41.78  Aligned_cols=75  Identities=16%  Similarity=0.034  Sum_probs=52.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +|+|+|+|.+|..+++.+...|. .|+++++++++.+.+.+ .+... +.-+..+.   +.+.   +..-.++|+++-++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~~-i~gd~~~~---~~l~---~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKATI-IHGDGSHK---EILR---DAEVSKNDVVVILT   73 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSEE-EESCTTSH---HHHH---HHTCCTTCEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCeE-EEcCCCCH---HHHH---hcCcccCCEEEEec
Confidence            58899999999999999988998 68889999988876544 55433 22222221   1222   22235789999999


Q ss_pred             CChH
Q 020928          218 GFDK  221 (319)
Q Consensus       218 g~~~  221 (319)
                      +.+.
T Consensus        74 ~~d~   77 (218)
T 3l4b_C           74 PRDE   77 (218)
T ss_dssp             SCHH
T ss_pred             CCcH
Confidence            9863

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.00  E-value=0.048  Score=45.90  Aligned_cols=82  Identities=17%  Similarity=0.220  Sum_probs=49.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC----------------hhHHHHH----HHcCCCEe-eccC-CCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD----------------VQRLSIA----RNLGADET-AKVS-TDI  192 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~----------------~~~~~~~----~~~g~~~v-~~~~-~~~  192 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.++++                +++.+.+    ++.+.... +..+ .+.
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   88 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY   88 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence            578899998 59999999998888899 67777665                3433322    22332221 1112 222


Q ss_pred             cchhHHHHHhhhhcCCCccEEEEccCC
Q 020928          193 EDVDTDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       193 ~~~~~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      ++....+.++.+.. +++|++|++.|.
T Consensus        89 ~~v~~~~~~~~~~~-g~id~lv~nAg~  114 (286)
T 3uve_A           89 DALKAAVDSGVEQL-GRLDIIVANAGI  114 (286)
T ss_dssp             HHHHHHHHHHHHHH-SCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHh-CCCCEEEECCcc
Confidence            23333444444333 479999999884

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.00  E-value=0.035  Score=46.40  Aligned_cols=82  Identities=17%  Similarity=0.268  Sum_probs=49.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-ChhHHHHH----HHcCCCE-eeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA----RNLGADE-TAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-~~~~~~~~----~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +|++|.++++.+...|+ +|+++++ ++++.+.+    ++.+... .+..+ .+.++....+.++.+.. 
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~-  104 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERW-  104 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            467899998 59999999998888899 5666555 55443332    2334322 12222 22223333444444333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus       105 g~id~lv~nAg~  116 (269)
T 4dmm_A          105 GRLDVLVNNAGI  116 (269)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999885

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=95.99  E-value=0.024  Score=46.88  Aligned_cols=99  Identities=11%  Similarity=0.094  Sum_probs=65.5

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh--hcC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN--AMG  207 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~--~~~  207 (319)
                      .+++.+||=+|+|+ |..++.+|+......|++++.+++..+++++    ++...+..+..   +.    .++..  ...
T Consensus        78 ~~~~~~vLDiG~G~-G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~---d~----~~~~~~~~~~  149 (249)
T 3g89_A           78 WQGPLRVLDLGTGA-GFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWG---RA----EVLAREAGHR  149 (249)
T ss_dssp             CCSSCEEEEETCTT-TTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEEC---CH----HHHTTSTTTT
T ss_pred             cCCCCEEEEEcCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEEC---cH----HHhhcccccC
Confidence            35788998898876 7777888887654489999999998887765    45433222111   21    11211  113


Q ss_pred             CCccEEEEccCC--hHHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSFDCVGF--DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~d~~g~--~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..||+|+...-.  +..+..+.+.|+++|+++.+-
T Consensus       150 ~~fD~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          150 EAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             TCEEEEEEESSCCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCceEEEECCcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            579999864333  245667778999999988764

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.99  E-value=0.012  Score=47.84  Aligned_cols=96  Identities=17%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-EeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      ++++.+||-+|+|. |..+..+++. |. .|++++.++...+.+++.... ..+.-     +..+.   +.......+|+
T Consensus        46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-----d~~~~---~~~~~~~~fD~  114 (226)
T 3m33_A           46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEW-----NGKGE---LPAGLGAPFGL  114 (226)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEEC-----CSCSS---CCTTCCCCEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEc-----chhhc---cCCcCCCCEEE
Confidence            47889999999876 7788888887 66 899999999998888875321 11111     11000   10001357999


Q ss_pred             EEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          213 SFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       213 v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |+....-...+..+.+.|+++|+++..+
T Consensus       115 v~~~~~~~~~l~~~~~~LkpgG~l~~~~  142 (226)
T 3m33_A          115 IVSRRGPTSVILRLPELAAPDAHFLYVG  142 (226)
T ss_dssp             EEEESCCSGGGGGHHHHEEEEEEEEEEE
T ss_pred             EEeCCCHHHHHHHHHHHcCCCcEEEEeC
Confidence            9987655567889999999999998443

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.98  E-value=0.066  Score=45.36  Aligned_cols=86  Identities=14%  Similarity=0.193  Sum_probs=58.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|.|+|+|.+|...+..+...|. .|.+.++++++.+.+++.|....       .+..+.+        .+.|+||.|+.
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~--------~~~D~vi~~v~   70 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAETA-------STAKAIA--------EQCDVIITMLP   70 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-------SSHHHHH--------HHCSEEEECCS
T ss_pred             eEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCeec-------CCHHHHH--------hCCCEEEEECC
Confidence            78999999999998888888897 68888999888887777664221       1111111        14788998888


Q ss_pred             ChHHHHHHH-------HhhcCCCEEEEec
Q 020928          219 FDKTMSTAL-------NATRPGGKVCLIG  240 (319)
Q Consensus       219 ~~~~~~~~~-------~~l~~~G~~v~~g  240 (319)
                      .+......+       +.++++..++.++
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~~~vv~~s   99 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPGTVLIDMS   99 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             CHHHHHHHHhCcchHhhcCCCCCEEEECC
Confidence            653444333       4566777666654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=95.98  E-value=0.022  Score=48.75  Aligned_cols=95  Identities=14%  Similarity=0.160  Sum_probs=63.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHHc-CCC---EeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          138 TNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNL-GAD---ETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~~-g~~---~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .+||++|+|. |.++..+++.. +. ++++++.+++-.+.+++. +..   .+..   ...|..+.+...   ....||+
T Consensus        91 ~rVLdIG~G~-G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~~rv~v---~~~Da~~~l~~~---~~~~fDv  162 (317)
T 3gjy_A           91 LRITHLGGGA-CTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRAPRVKI---RVDDARMVAESF---TPASRDV  162 (317)
T ss_dssp             CEEEEESCGG-GHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCTTTEEE---EESCHHHHHHTC---CTTCEEE
T ss_pred             CEEEEEECCc-CHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCCCceEE---EECcHHHHHhhc---cCCCCCE
Confidence            4999999876 77888888865 55 899999999999998874 321   1111   012322222221   2457999


Q ss_pred             EEEccCC----------hHHHHHHHHhhcCCCEEEEec
Q 020928          213 SFDCVGF----------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       213 v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ||-....          .+.++.+.+.|+++|.++.-.
T Consensus       163 Ii~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          163 IIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             EEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            8753211          356888999999999987543

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=95.97  E-value=0.021  Score=47.60  Aligned_cols=99  Identities=16%  Similarity=0.174  Sum_probs=61.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +|+++||+| ++++|.+..+.+...|+ +|+.++++++.     .......+..+ .+.++....+.+..+.. +++|++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~iDil   82 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPE-----GLPEELFVEADLTTKEGCAIVAEATRQRL-GGVDVI   82 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCT-----TSCTTTEEECCTTSHHHHHHHHHHHHHHT-SSCSEE
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchh-----CCCcEEEEEcCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            578999998 69999999999999999 67777775432     11111111111 22233333444444433 479999


Q ss_pred             EEccCCh------------H---------------HHHHHHHhh--cCCCEEEEecc
Q 020928          214 FDCVGFD------------K---------------TMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       214 ~d~~g~~------------~---------------~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      +++.|..            +               ..+..++.|  +.+|+++.+++
T Consensus        83 VnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS  139 (261)
T 4h15_A           83 VHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTS  139 (261)
T ss_dssp             EECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             EECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEe
Confidence            9988731            0               234555555  45689998875

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.97  E-value=0.045  Score=46.08  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=49.2

Q ss_pred             CCCeEEEEC-C--CHHHHHHHHHHHHcCCCeEEEecCChh---HHHHHH-HcCCCEeeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-S--GPIGLVTLLAARAFGAPRIIITDVDVQ---RLSIAR-NLGADETAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~--g~vG~~ai~la~~~g~~~vv~v~~~~~---~~~~~~-~~g~~~v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +  |.+|.++++.+...|+ .|+.++++++   ..+.+. +.+....+..+- +.++....+.++.+. -
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~   97 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEEN-W   97 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH-T
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence            467899998 5  7999999998888898 6777777764   222222 233222222222 222333333334332 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        98 g~iD~lv~~Ag~  109 (285)
T 2p91_A           98 GSLDIIVHSIAY  109 (285)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999873

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=95.96  E-value=0.021  Score=46.94  Aligned_cols=75  Identities=11%  Similarity=-0.021  Sum_probs=49.6

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-c--CChhHHHHH-HHc-CCCEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-D--VDVQRLSIA-RNL-GADETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~--~~~~~~~~~-~~~-g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      ++++||+| +|.+|.++++.+...|+ +|+.+ +  +++++.+.+ +++ +. .+.    +.++....+.++.+.. +++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~-g~i   73 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGT-IAL----AEQKPERLVDATLQHG-EAI   73 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTE-EEC----CCCCGGGHHHHHGGGS-SCE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCC-ccc----CHHHHHHHHHHHHHHc-CCC
Confidence            36789998 69999999998888898 68887 5  777665544 334 32 121    2234444444444332 479


Q ss_pred             cEEEEccC
Q 020928          211 DVSFDCVG  218 (319)
Q Consensus       211 d~v~d~~g  218 (319)
                      |++|++.|
T Consensus        74 D~lv~~Ag   81 (244)
T 1zmo_A           74 DTIVSNDY   81 (244)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.95  E-value=0.026  Score=44.97  Aligned_cols=96  Identities=19%  Similarity=0.297  Sum_probs=64.5

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC----EeeccCCCCcchhHHHHHhhhhcCCC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD----ETAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      ++++.+||-+|+|. |..+..+++. |...+++++.++...+.+++....    ..+.  .   +..    ++. .....
T Consensus        40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~--~---d~~----~~~-~~~~~  107 (215)
T 2pxx_A           40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWET--M---DVR----KLD-FPSAS  107 (215)
T ss_dssp             CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEE--C---CTT----SCC-SCSSC
T ss_pred             cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEE--c---chh----cCC-CCCCc
Confidence            57889999999877 8788888876 544799999999998888774321    1111  1   110    110 12356


Q ss_pred             ccEEEEccCC---------------------hHHHHHHHHhhcCCCEEEEecc
Q 020928          210 IDVSFDCVGF---------------------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       210 ~d~v~d~~g~---------------------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +|+|+....-                     ...+..+.+.|+++|+++....
T Consensus       108 fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          108 FDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             EEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            9999863210                     2457778889999999987754

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=95.95  E-value=0.055  Score=45.90  Aligned_cols=81  Identities=19%  Similarity=0.283  Sum_probs=49.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-Hc--------CCCE-eeccCC-CCcchhHHHHHhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL--------GADE-TAKVST-DIEDVDTDVGKIQ  203 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~--------g~~~-v~~~~~-~~~~~~~~i~~~~  203 (319)
                      .+.++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+. ++        +... .+..+- +.+++...+..+.
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            467899998 69999999998888898 6888888876654332 22        2211 111111 1223333333333


Q ss_pred             hhcCCCccEEEEccC
Q 020928          204 NAMGSGIDVSFDCVG  218 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g  218 (319)
                      +.. +++|++|++.|
T Consensus        96 ~~~-g~id~li~~Ag  109 (303)
T 1yxm_A           96 DTF-GKINFLVNNGG  109 (303)
T ss_dssp             HHH-SCCCEEEECCC
T ss_pred             HHc-CCCCEEEECCC
Confidence            322 37999999998

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.95  E-value=0.052  Score=45.53  Aligned_cols=83  Identities=19%  Similarity=0.184  Sum_probs=50.6

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-------------ChhHHHHH----HHcCCCEe-eccC-CCCcc
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-------------DVQRLSIA----RNLGADET-AKVS-TDIED  194 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-------------~~~~~~~~----~~~g~~~v-~~~~-~~~~~  194 (319)
                      -.++++||+| ++++|.++++.+...|+ +|+++++             ++++.+.+    ++.+.... +..+ .+.++
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~   91 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA   91 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            3578999998 69999999998888899 6777765             44444332    22332221 1111 22223


Q ss_pred             hhHHHHHhhhhcCCCccEEEEccCC
Q 020928          195 VDTDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       195 ~~~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      ....+.++.+.. +++|+++++.|.
T Consensus        92 v~~~~~~~~~~~-g~id~lvnnAg~  115 (280)
T 3pgx_A           92 LRELVADGMEQF-GRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHH-CCCCEEEECCCC
T ss_pred             HHHHHHHHHHHc-CCCCEEEECCCC
Confidence            333444443333 479999999885

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=95.94  E-value=0.084  Score=42.24  Aligned_cols=98  Identities=17%  Similarity=0.112  Sum_probs=64.1

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .++.+||-+|+|. |..++.+++...-..+++++.+++..+.+++    .+...+..+..+..++..   .+   ....+
T Consensus        40 ~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~---~~~~~  112 (214)
T 1yzh_A           40 NDNPIHVEVGSGK-GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD---YF---EDGEI  112 (214)
T ss_dssp             SCCCEEEEESCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG---TS---CTTCC
T ss_pred             CCCCeEEEEccCc-CHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh---hc---CCCCC
Confidence            4577888889876 8888889988743489999999988777655    343322211111111110   01   13468


Q ss_pred             cEEEEccCC--------------hHHHHHHHHhhcCCCEEEEe
Q 020928          211 DVSFDCVGF--------------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       211 d~v~d~~g~--------------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      |.|+-....              ...+..+.+.|+++|.++..
T Consensus       113 D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          113 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            998766554              24788889999999998764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=95.93  E-value=0.054  Score=45.36  Aligned_cols=104  Identities=20%  Similarity=0.302  Sum_probs=62.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC------------hhHHHH----HHHcCCCEe-eccC-CCCcchh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD------------VQRLSI----ARNLGADET-AKVS-TDIEDVD  196 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~------------~~~~~~----~~~~g~~~v-~~~~-~~~~~~~  196 (319)
                      .++++||+| ++++|.++++.+...|+ .|+.++++            +++.+.    +++.+.... +..+ .+.++..
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS   90 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            568999998 69999999998888899 67777665            333322    223343221 1112 2222333


Q ss_pred             HHHHHhhhhcCCCccEEEEccCCh------H---------------HHHHHHHhhc---CCCEEEEecc
Q 020928          197 TDVGKIQNAMGSGIDVSFDCVGFD------K---------------TMSTALNATR---PGGKVCLIGL  241 (319)
Q Consensus       197 ~~i~~~~~~~~~~~d~v~d~~g~~------~---------------~~~~~~~~l~---~~G~~v~~g~  241 (319)
                      ..+.++.+.. +++|++|++.|..      +               ..+.+++.+.   .+|+++.++.
T Consensus        91 ~~~~~~~~~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (278)
T 3sx2_A           91 AALQAGLDEL-GRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS  158 (278)
T ss_dssp             HHHHHHHHHH-CCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHc-CCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence            3444444333 4799999999852      1               2333444442   3689998875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=95.93  E-value=0.046  Score=44.62  Aligned_cols=96  Identities=13%  Similarity=0.077  Sum_probs=64.7

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ..++++.+||-+|+|. |..+..+++. |. .+++++.+++..+.+++.  ...+.     .+..+.+..+   ..+.+|
T Consensus        37 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~--~~~~~-----~d~~~~~~~~---~~~~fD  103 (240)
T 3dli_A           37 PYFKGCRRVLDIGCGR-GEFLELCKEE-GI-ESIGVDINEDMIKFCEGK--FNVVK-----SDAIEYLKSL---PDKYLD  103 (240)
T ss_dssp             GGTTTCSCEEEETCTT-THHHHHHHHH-TC-CEEEECSCHHHHHHHHTT--SEEEC-----SCHHHHHHTS---CTTCBS
T ss_pred             hhhcCCCeEEEEeCCC-CHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh--cceee-----ccHHHHhhhc---CCCCee
Confidence            3467889999999875 6667777776 77 689999999998888875  12211     1222211111   246799


Q ss_pred             EEEEcc-----CC---hHHHHHHHHhhcCCCEEEEec
Q 020928          212 VSFDCV-----GF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       212 ~v~d~~-----g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +|+..-     ..   ...+..+.+.|+++|+++...
T Consensus       104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (240)
T 3dli_A          104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES  140 (240)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred             EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            998532     21   246788889999999988654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=95.93  E-value=0.018  Score=48.98  Aligned_cols=98  Identities=17%  Similarity=0.144  Sum_probs=63.3

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC--------CCEeeccCCCCcchhHHHHHhhhhc
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG--------ADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g--------~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .++.+||++|+|. |..+..+++..+...|++++.++...+.+++.-        ...+...   ..|....+    ...
T Consensus        89 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~---~~D~~~~l----~~~  160 (296)
T 1inl_A           89 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIV---IANGAEYV----RKF  160 (296)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE---ESCHHHHG----GGC
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEE---ECcHHHHH----hhC
Confidence            4568999998766 667778888766668999999999888887632        1111111   11222221    112


Q ss_pred             CCCccEEEEccCC-----------hHHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSFDCVGF-----------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~d~~g~-----------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...+|+|+-....           .+.++.+.+.|+++|.++...
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            4579998742211           346788899999999998753

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=95.93  E-value=0.024  Score=47.42  Aligned_cols=80  Identities=23%  Similarity=0.348  Sum_probs=49.9

Q ss_pred             CCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCc
Q 020928          133 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       133 ~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .-..++++||+| ++++|.++++.+...|+ +|+.+++++++..     +....+..+ .+.++....+.++.+.. +++
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~i   82 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDV-----NVSDHFKIDVTNEEEVKEAVEKTTKKY-GRI   82 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CT-----TSSEEEECCTTCHHHHHHHHHHHHHHH-SCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhcc-----CceeEEEecCCCHHHHHHHHHHHHHHc-CCC
Confidence            345688999998 59999999998888899 6777777665431     111222222 22223333444444333 479


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |++|++.|.
T Consensus        83 D~lv~nAg~   91 (269)
T 3vtz_A           83 DILVNNAGI   91 (269)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999985

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=95.92  E-value=0.038  Score=49.99  Aligned_cols=82  Identities=20%  Similarity=0.285  Sum_probs=52.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH---HHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR---LSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~---~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      +++++||+| +|++|..+++.+...|+ +|+.+++++..   .+..++.+...+ ..+ ++.++....+.++.+..+..+
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~~~~l~~~~~~~~~~~~-~~Dvtd~~~v~~~~~~~~~~~g~~i  289 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGAAEDLKRVADKVGGTAL-TLDVTADDAVDKITAHVTEHHGGKV  289 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGGHHHHHHHHHHHTCEEE-ECCTTSTTHHHHHHHHHHHHSTTCC
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEE-EEecCCHHHHHHHHHHHHHHcCCCc
Confidence            467889997 69999998887777899 67777765432   223344554322 222 233344445555554444459


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |++|++.|.
T Consensus       290 d~lV~nAGv  298 (454)
T 3u0b_A          290 DILVNNAGI  298 (454)
T ss_dssp             SEEEECCCC
T ss_pred             eEEEECCcc
Confidence            999999985

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.92  E-value=0.014  Score=49.32  Aligned_cols=96  Identities=19%  Similarity=0.229  Sum_probs=63.7

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC-----C--------CEeeccCCCCcchhHHHHH
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-----A--------DETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g-----~--------~~v~~~~~~~~~~~~~i~~  201 (319)
                      .++.+||++|+|. |..+..+++. +..++++++.+++..+.+++.-     .        +.-+.+  ...|..+.+. 
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~--~~~D~~~~l~-  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKL--TIGDGFEFIK-  148 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEE--EESCHHHHHH-
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEE--EECchHHHhc-
Confidence            5678999998776 6777788887 7668999999999988888632     1        000110  0112222221 


Q ss_pred             hhhhcCCCccEEEEccC----------ChHHHHHHHHhhcCCCEEEEe
Q 020928          202 IQNAMGSGIDVSFDCVG----------FDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g----------~~~~~~~~~~~l~~~G~~v~~  239 (319)
                        .  ...+|+|+-...          ..+.++.+.+.|+++|.++.-
T Consensus       149 --~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          149 --N--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             --H--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             --c--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence              1  457999874332          234678899999999998865

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.91  E-value=0.055  Score=47.32  Aligned_cols=48  Identities=25%  Similarity=0.311  Sum_probs=40.1

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGAD  183 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~  183 (319)
                      -.|.+|+|.|.|.+|..+++.+...|+ +|++.+.+.++.+ +++++++.
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            478999999999999999999999999 6788888887765 55556653

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.91  E-value=0.032  Score=50.21  Aligned_cols=104  Identities=12%  Similarity=0.122  Sum_probs=68.3

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHH-cCCC--eEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARA-FGAP--RIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~-~g~~--~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      .+....+|+|+|+|+||..++.++.. .++.  .|++++..+.+.+..+.+|... ....-...+..+.+..+.   ..+
T Consensus         9 ~~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~-~~~~Vdadnv~~~l~aLl---~~~   84 (480)
T 2ph5_A            9 KILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSF-KLQQITPQNYLEVIGSTL---EEN   84 (480)
T ss_dssp             CBCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEE-EECCCCTTTHHHHTGGGC---CTT
T ss_pred             eecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCce-eEEeccchhHHHHHHHHh---cCC
Confidence            34556789999999999999987654 4542  5777777666556666666432 222222233334444443   223


Q ss_pred             ccEEEEccCChHHHHHHHHhhcCCCEEEEecc
Q 020928          210 IDVSFDCVGFDKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       210 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                       |+|+++.-....+..+-.|+..+-.++.+..
T Consensus        85 -DvVIN~s~~~~~l~Im~acleaGv~YlDTa~  115 (480)
T 2ph5_A           85 -DFLIDVSIGISSLALIILCNQKGALYINAAT  115 (480)
T ss_dssp             -CEEEECCSSSCHHHHHHHHHHHTCEEEESSC
T ss_pred             -CEEEECCccccCHHHHHHHHHcCCCEEECCC
Confidence             9999977655566777778888889988864

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.91  E-value=0.036  Score=46.42  Aligned_cols=81  Identities=22%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|.+|..++..+...|+ .|+.+++++++.+.+    ++.+... .+..+- +.++....+.++.+.. +
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g  110 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDF-G  110 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHh-C
Confidence            367899998 69999999887777898 677777765543322    2234221 222221 1223333333333322 4


Q ss_pred             CccEEEEccC
Q 020928          209 GIDVSFDCVG  218 (319)
Q Consensus       209 ~~d~v~d~~g  218 (319)
                      .+|++|++.|
T Consensus       111 ~id~li~~Ag  120 (279)
T 3ctm_A          111 TIDVFVANAG  120 (279)
T ss_dssp             CCSEEEECGG
T ss_pred             CCCEEEECCc
Confidence            6999999887

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.90  E-value=0.06  Score=45.72  Aligned_cols=82  Identities=20%  Similarity=0.256  Sum_probs=49.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC------------hhHHH----HHHHcCCCEe-eccC-CCCcchh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD------------VQRLS----IARNLGADET-AKVS-TDIEDVD  196 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~------------~~~~~----~~~~~g~~~v-~~~~-~~~~~~~  196 (319)
                      .++++||+| ++++|.++++.+...|+ .|++++++            +++.+    .+++.+.... +..+ .+.++..
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~  105 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ  105 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence            568899998 69999999998888899 67777665            33322    2233443221 1112 1222333


Q ss_pred             HHHHHhhhhcCCCccEEEEccCC
Q 020928          197 TDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       197 ~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      ..+.++.+.. +.+|++|++.|.
T Consensus       106 ~~~~~~~~~~-g~iD~lv~nAg~  127 (299)
T 3t7c_A          106 AAVDDGVTQL-GRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHH-SCCCEEEECCCC
T ss_pred             HHHHHHHHHh-CCCCEEEECCCC
Confidence            3444443333 479999999884

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.89  E-value=0.041  Score=45.96  Aligned_cols=82  Identities=18%  Similarity=0.232  Sum_probs=49.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-ChhHHHHH----HHcCCCE-eeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA----RNLGADE-TAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-~~~~~~~~----~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +|++|..+++.+...|+ +|+.+++ .++..+.+    ++.+... .+..+- +.++....+.++.+.. 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-  105 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSD-  105 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhc-
Confidence            467899998 59999999988888899 6777766 44443332    2334222 222221 2223333444443332 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus       106 g~id~li~nAg~  117 (271)
T 4iin_A          106 GGLSYLVNNAGV  117 (271)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999885

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.89  E-value=0.03  Score=45.36  Aligned_cols=98  Identities=15%  Similarity=0.292  Sum_probs=64.7

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEe--------eccCCCCcchhHHHHHhhhh
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET--------AKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v--------~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ++++.+||-+|+|. |..+..+++. |. .+++++.++...+.+++.-...-        +.+..  .+.    ..+. .
T Consensus        28 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~d~----~~~~-~   97 (235)
T 3sm3_A           28 LQEDDEILDIGCGS-GKISLELASK-GY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKV--ENA----SSLS-F   97 (235)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEE--CCT----TSCC-S
T ss_pred             CCCCCeEEEECCCC-CHHHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEE--ecc----cccC-C
Confidence            67889999999876 7788888887 76 89999999998888877332110        01000  011    0010 1


Q ss_pred             cCCCccEEEEccC-----Ch----HHHHHHHHhhcCCCEEEEecc
Q 020928          206 MGSGIDVSFDCVG-----FD----KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       206 ~~~~~d~v~d~~g-----~~----~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ....+|+|+-...     .+    ..+..+.+.|+++|+++....
T Consensus        98 ~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           98 HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            2457999885321     22    467888899999999987754

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=95.89  E-value=0.053  Score=44.44  Aligned_cols=81  Identities=20%  Similarity=0.270  Sum_probs=50.0

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-Hc----CCC-EeeccCC-CCcchhHHHHHhhhhcCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NL----GAD-ETAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~----g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      ++++||+| +|.+|..++..+...|+ .|+.+++++++.+.+. ++    +.. ..+..+- +.++....+.++.+.. +
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   79 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQF-G   79 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh-C
Confidence            56899998 69999999998888898 6888888876655432 23    211 1121121 1223333333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        80 ~id~li~~Ag~   90 (250)
T 2cfc_A           80 AIDVLVNNAGI   90 (250)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.89  E-value=0.032  Score=46.58  Aligned_cols=83  Identities=22%  Similarity=0.404  Sum_probs=50.5

Q ss_pred             CCCeEEEEC---CCHHHHHHHHHHHHcCCCeEEEecCChhH--HHHHHHcCCC-EeeccC-CCCcchhHHHHHhhhhcC-
Q 020928          136 PETNVMIMG---SGPIGLVTLLAARAFGAPRIIITDVDVQR--LSIARNLGAD-ETAKVS-TDIEDVDTDVGKIQNAMG-  207 (319)
Q Consensus       136 ~~~~vlI~G---~g~vG~~ai~la~~~g~~~vv~v~~~~~~--~~~~~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~-  207 (319)
                      .++++||+|   +|++|.++++.+...|+ .|+.+++++++  .+..++++.. ..+..+ .+.++....+.++.+..+ 
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            467899997   58999999998888898 67777777654  2333344421 111112 122233334444433333 


Q ss_pred             -CCccEEEEccCC
Q 020928          208 -SGIDVSFDCVGF  219 (319)
Q Consensus       208 -~~~d~v~d~~g~  219 (319)
                       .++|++|++.|.
T Consensus        85 ~~~iD~lv~nAg~   97 (269)
T 2h7i_A           85 GNKLDGVVHSIGF   97 (269)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             CCCceEEEECCcc
Confidence             279999999873

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=95.88  E-value=0.019  Score=49.75  Aligned_cols=100  Identities=19%  Similarity=0.220  Sum_probs=66.3

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC------C--CEeeccCCCCcchhHHHHHhhh
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG------A--DETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g------~--~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ..+++.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.-      .  ..+..   ...|....+...  
T Consensus       117 ~~~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~---~~~D~~~~l~~~--  190 (334)
T 1xj5_A          117 SIPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNL---VIGDGVAFLKNA--  190 (334)
T ss_dssp             TSSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEE---EESCHHHHHHTS--
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEE---EECCHHHHHHhc--
Confidence            456778999999776 777888888765558999999999888887632      1  11111   112332222211  


Q ss_pred             hcCCCccEEEEccC----------ChHHHHHHHHhhcCCCEEEEe
Q 020928          205 AMGSGIDVSFDCVG----------FDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       205 ~~~~~~d~v~d~~g----------~~~~~~~~~~~l~~~G~~v~~  239 (319)
                       ....+|+|+-...          ....+..+.+.|+++|.++.-
T Consensus       191 -~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          191 -AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             -CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             -cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence             2357999885332          235788899999999999875

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=95.87  E-value=0.05  Score=45.04  Aligned_cols=81  Identities=20%  Similarity=0.275  Sum_probs=49.1

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH--HH-HHHHc---CCCE-eeccC-CCCcchhHHHHHhhhhcC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR--LS-IARNL---GADE-TAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~--~~-~~~~~---g~~~-v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      ++++||+| +|.+|.++++.+...|+ +|+.+++++++  .+ ..+++   +... .+..+ .+.++....+.++.+.. 
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKL-   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh-
Confidence            56899998 69999999988777898 67777777665  33 22322   3221 12112 12223333344443322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        80 g~iD~lv~nAg~   91 (258)
T 3a28_C           80 GGFDVLVNNAGI   91 (258)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.87  E-value=0.016  Score=46.98  Aligned_cols=86  Identities=13%  Similarity=0.142  Sum_probs=54.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.++++++             .|+ .+.+    .++++.+.. +++|+++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~-~~~~----~v~~~~~~~-g~id~lv   64 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDI-SDEK----SVYHYFETI-GAFDHLI   64 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCT-TCHH----HHHHHHHHH-CSEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCC-CCHH----HHHHHHHHh-CCCCEEE
Confidence            457889998 69999999988888898 6777766543             122 1111    222222222 4688998


Q ss_pred             EccCCh-----------H---------------HHHHHHHhhcCCCEEEEecc
Q 020928          215 DCVGFD-----------K---------------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       215 d~~g~~-----------~---------------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ++.|..           +               ..+.+.+.++++|+++.++.
T Consensus        65 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS  117 (223)
T 3uce_A           65 VTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSG  117 (223)
T ss_dssp             ECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             ECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecc
Confidence            888742           0               22334445566789998875

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.86  E-value=0.059  Score=45.23  Aligned_cols=83  Identities=14%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             CCCCeEEEEC-CC--HHHHHHHHHHHHcCCCeEEEecCCh--hHHHHHHH-cCCCEeeccCC-CCcchhHHHHHhhhhcC
Q 020928          135 GPETNVMIMG-SG--PIGLVTLLAARAFGAPRIIITDVDV--QRLSIARN-LGADETAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       135 ~~~~~vlI~G-~g--~vG~~ai~la~~~g~~~vv~v~~~~--~~~~~~~~-~g~~~v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      -.++++||+| +|  ++|.++++.+...|+ +|+.++++.  +..+.+.+ .+....+..+- +.++....+.++.+. -
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~  101 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKV-W  101 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHH-C
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHH-c
Confidence            4578999998 44  499999888888898 677777766  44444433 33323332222 222333344444433 3


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +.+|++|++.|.
T Consensus       102 g~id~li~nAg~  113 (280)
T 3nrc_A          102 DGLDAIVHSIAF  113 (280)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999874

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=95.86  E-value=0.031  Score=45.69  Aligned_cols=104  Identities=15%  Similarity=0.199  Sum_probs=68.8

Q ss_pred             HHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHh
Q 020928          127 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       127 ~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      ..+...+++++.+||-+|+|. |..+..+++.. . .+++++.+++..+.+++.    +...+........+       +
T Consensus        12 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-------~   81 (239)
T 1xxl_A           12 LMIKTAECRAEHRVLDIGAGA-GHTALAFSPYV-Q-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES-------L   81 (239)
T ss_dssp             HHHHHHTCCTTCEEEEESCTT-SHHHHHHGGGS-S-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB-------C
T ss_pred             hHHHHhCcCCCCEEEEEccCc-CHHHHHHHHhC-C-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccccc-------C
Confidence            345667899999999999877 77888887764 4 899999999887776652    32222111111111       1


Q ss_pred             hhhcCCCccEEEEccCC------hHHHHHHHHhhcCCCEEEEecc
Q 020928          203 QNAMGSGIDVSFDCVGF------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      . .....+|+|+....-      ...+..+.+.|+++|+++....
T Consensus        82 ~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           82 P-FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             C-SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C-CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            0 123579999865332      2467888899999999987653

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=95.85  E-value=0.044  Score=44.31  Aligned_cols=102  Identities=16%  Similarity=0.173  Sum_probs=64.2

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHHc-C-CCEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNL-G-ADETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~~-g-~~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      ..++++++||-+|+|. |..+..+++..|. ..|++++.+++..+.+++. . ...+.....   +..... .+. ....
T Consensus        69 ~~~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~---d~~~~~-~~~-~~~~  142 (227)
T 1g8a_A           69 FPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILG---DATKPE-EYR-ALVP  142 (227)
T ss_dssp             CCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEEC---CTTCGG-GGT-TTCC
T ss_pred             cCCCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEc---cCCCcc-hhh-cccC
Confidence            4578999999999887 8888899988652 3899999999765554431 1 111111111   111100 000 0134


Q ss_pred             CccEEEEccCCh----HHHHHHHHhhcCCCEEEEe
Q 020928          209 GIDVSFDCVGFD----KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       209 ~~d~v~d~~g~~----~~~~~~~~~l~~~G~~v~~  239 (319)
                      .+|+|+-....+    ..+..+.+.|+++|+++..
T Consensus       143 ~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          143 KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            699998665543    2377788999999998876

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=95.85  E-value=0.069  Score=45.22  Aligned_cols=109  Identities=18%  Similarity=0.211  Sum_probs=67.9

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHHc-----C-CCEeeccCCCCcchhHHHHH
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNL-----G-ADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~~-----g-~~~v~~~~~~~~~~~~~i~~  201 (319)
                      +.....+++.+||-+|+|. |..+..+++.. ....|++++.++...+.+++.     + ...+........+..  ...
T Consensus        29 l~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~--~~~  105 (299)
T 3g5t_A           29 IDEYHDGERKLLVDVGCGP-GTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK--FLG  105 (299)
T ss_dssp             HHHHCCSCCSEEEEETCTT-THHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG--GGC
T ss_pred             HHHHhcCCCCEEEEECCCC-CHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC--ccc
Confidence            3333346889999999886 88999999865 445899999999888877763     1 111111111111110  000


Q ss_pred             hhhhcCCCccEEEEccCC-----hHHHHHHHHhhcCCCEEEEec
Q 020928          202 IQNAMGSGIDVSFDCVGF-----DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~-----~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ......+.+|+|+....-     ...+..+.+.|+++|.++...
T Consensus       106 ~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (299)
T 3g5t_A          106 ADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWG  149 (299)
T ss_dssp             TTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEe
Confidence            000002579999865431     347888999999999988743

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=95.84  E-value=0.05  Score=45.20  Aligned_cols=82  Identities=20%  Similarity=0.321  Sum_probs=49.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHH-cCCCeEEEecCChhHHHHH-HH---cCCC-EeeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARA-FGAPRIIITDVDVQRLSIA-RN---LGAD-ETAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~-~g~~~vv~v~~~~~~~~~~-~~---~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      ++.++||+| +|.+|..++..+.. .|+ .|+.++++.++.+.+ ++   .+.. ..+..+- +.+++...+.++.+.. 
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-   80 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY-   80 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc-
Confidence            567899998 59999998887777 898 688888876654332 22   2321 2222221 2223333334343322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        81 g~id~li~~Ag~   92 (276)
T 1wma_A           81 GGLDVLVNNAGI   92 (276)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999874

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.84  E-value=0.058  Score=45.23  Aligned_cols=78  Identities=15%  Similarity=0.222  Sum_probs=50.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCE-eeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADE-TAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++.+.+ ++++... .+..+- +.++....+..+ + .-+++|
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~-~-~~~~id  105 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAA-N-QLGRLR  105 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHH-T-TSSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHH-H-HhCCCC
Confidence            467899998 59999999998888899 688888888776544 4455322 222221 222333333333 2 234789


Q ss_pred             EEEEc
Q 020928          212 VSFDC  216 (319)
Q Consensus       212 ~v~d~  216 (319)
                      +++.+
T Consensus       106 ~lv~~  110 (281)
T 3ppi_A          106 YAVVA  110 (281)
T ss_dssp             EEEEC
T ss_pred             eEEEc
Confidence            99988

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.83  E-value=0.041  Score=45.85  Aligned_cols=81  Identities=14%  Similarity=0.253  Sum_probs=49.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---C-CCEeeccCCCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---G-ADETAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g-~~~v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.+++++++.+.+ +++   + ...+..+..+-.+ .+.+.++.+.. ++
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~-g~   85 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT-EQGCQDVIEKY-PK   85 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS-HHHHHHHHHHC-CC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC-HHHHHHHHHhc-CC
Confidence            467899998 59999999998888898 688888887654432 222   1 1122111111111 22334444332 47


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|+++++.|.
T Consensus        86 id~lv~nAg~   95 (267)
T 3t4x_A           86 VDILINNLGI   95 (267)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.82  E-value=0.12  Score=43.34  Aligned_cols=90  Identities=20%  Similarity=0.181  Sum_probs=60.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCC-CccEEEEc
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGS-GIDVSFDC  216 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~-~~d~v~d~  216 (319)
                      +|.|+|+|.+|.+.++.++..|.. .|++.++++++.+.+++.|..... . .   +..+    .    -. +.|+||-|
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~-~-~---~~~~----~----~~~~aDvVila   69 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEG-T-T---SIAK----V----EDFSPDFVMLS   69 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEE-E-S---CGGG----G----GGTCCSEEEEC
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccc-c-C---CHHH----H----hcCCCCEEEEc
Confidence            688999999999999988888852 588889999888888887753110 0 1   1111    1    13 68999999


Q ss_pred             cCChHH---HHHHHHhhcCCCEEEEecc
Q 020928          217 VGFDKT---MSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       217 ~g~~~~---~~~~~~~l~~~G~~v~~g~  241 (319)
                      +.....   +..+...++++..++.++.
T Consensus        70 vp~~~~~~v~~~l~~~l~~~~iv~~~~~   97 (281)
T 2g5c_A           70 SPVRTFREIAKKLSYILSEDATVTDQGS   97 (281)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             CCHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence            986522   2334445677776666553

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.82  E-value=0.12  Score=44.44  Aligned_cols=89  Identities=15%  Similarity=0.195  Sum_probs=58.7

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      ..+|.|+|.|.+|....+.+...|. .|.+.++++++.+.+.+.|+...-       +..    +..    ...|+||-+
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~-------~~~----e~~----~~aDvVi~~   94 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATIHE-------QAR----AAA----RDADIVVSM   94 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEEES-------SHH----HHH----TTCSEEEEC
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEeeC-------CHH----HHH----hcCCEEEEE
Confidence            4589999999999999998888898 788999999988887776643211       111    111    246777777


Q ss_pred             cCChHHHHHH------HHhhcCCCEEEEecc
Q 020928          217 VGFDKTMSTA------LNATRPGGKVCLIGL  241 (319)
Q Consensus       217 ~g~~~~~~~~------~~~l~~~G~~v~~g~  241 (319)
                      +..+......      ...+.++..++.++.
T Consensus        95 vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st  125 (320)
T 4dll_A           95 LENGAVVQDVLFAQGVAAAMKPGSLFLDMAS  125 (320)
T ss_dssp             CSSHHHHHHHHTTTCHHHHCCTTCEEEECSC
T ss_pred             CCCHHHHHHHHcchhHHhhCCCCCEEEecCC
Confidence            7754333332      234556666665543

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.82  E-value=0.032  Score=46.08  Aligned_cols=92  Identities=22%  Similarity=0.295  Sum_probs=56.0

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +++||+| +|.+|..+++.+...|+ .|+++++++++.+      .....|+    .+ .+.++++.+...+++|++|++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~------~~~~~Dl----~~-~~~v~~~~~~~~~~id~lv~~   69 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVI------ADLSTAE----GR-KQAIADVLAKCSKGMDGLVLC   69 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEE------CCTTSHH----HH-HHHHHHHHTTCTTCCSEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhc------cccccCC----CC-HHHHHHHHHHhCCCCCEEEEC
Confidence            3689998 59999999998888898 6777777654321      0100011    01 123333333222578999999


Q ss_pred             cCChH------------------HHHHHHHhhcCC--CEEEEecc
Q 020928          217 VGFDK------------------TMSTALNATRPG--GKVCLIGL  241 (319)
Q Consensus       217 ~g~~~------------------~~~~~~~~l~~~--G~~v~~g~  241 (319)
                      .|...                  ..+.+.+.+...  |+++.++.
T Consensus        70 Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  114 (257)
T 1fjh_A           70 AGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISS  114 (257)
T ss_dssp             CCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             CCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECC
Confidence            88532                  134455555443  89998875

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.81  E-value=0.039  Score=47.71  Aligned_cols=90  Identities=16%  Similarity=0.178  Sum_probs=65.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++.++ +.++++|+...        +    +.++.    ...|+|+-
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~--------~----l~ell----~~aDvV~l  225 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQL--------P----LEEIW----PLCDFITV  225 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEEC--------C----HHHHG----GGCSEEEE
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCceeC--------C----HHHHH----hcCCEEEE
Confidence            56789999999999999999999998 78888887665 35566775321        1    11222    25799998


Q ss_pred             ccCChH----HH-HHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFDK----TM-STALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~~----~~-~~~~~~l~~~G~~v~~g~~~  243 (319)
                      ++....    .+ ...+..|++++.++.++...
T Consensus       226 ~~P~t~~t~~li~~~~l~~mk~gailIN~arg~  258 (335)
T 2g76_A          226 HTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGG  258 (335)
T ss_dssp             CCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTT
T ss_pred             ecCCCHHHHHhhCHHHHhhCCCCcEEEECCCcc
Confidence            877542    12 35678899999999988643

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.81  E-value=0.079  Score=46.30  Aligned_cols=89  Identities=20%  Similarity=0.261  Sum_probs=62.9

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      |.+|.|+|.|.+|..+++.++.+|. +|++.+++. +.+.+.+.|+...        +    +.++.    ...|+|+-+
T Consensus       176 gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~~~~--------~----l~ell----~~aDvV~l~  237 (365)
T 4hy3_A          176 GSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGVEPA--------S----LEDVL----TKSDFIFVV  237 (365)
T ss_dssp             SSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTCEEC--------C----HHHHH----HSCSEEEEC
T ss_pred             CCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCeeeC--------C----HHHHH----hcCCEEEEc
Confidence            6799999999999999999999999 788888775 3344555665321        2    22222    257898877


Q ss_pred             cCChH----H-HHHHHHhhcCCCEEEEecccC
Q 020928          217 VGFDK----T-MSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       217 ~g~~~----~-~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +....    . -...+..|++++.++.++...
T Consensus       238 ~Plt~~T~~li~~~~l~~mk~gailIN~aRG~  269 (365)
T 4hy3_A          238 AAVTSENKRFLGAEAFSSMRRGAAFILLSRAD  269 (365)
T ss_dssp             SCSSCC---CCCHHHHHTSCTTCEEEECSCGG
T ss_pred             CcCCHHHHhhcCHHHHhcCCCCcEEEECcCCc
Confidence            65421    1 246778899999999987543

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.80  E-value=0.029  Score=48.84  Aligned_cols=92  Identities=17%  Similarity=0.222  Sum_probs=66.7

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.++++...+.+++.|...+       .+    +.++.    ...|+|+-
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~----l~ell----~~aDvV~l  226 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV-------ED----LNEML----PKCDVIVI  226 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC-------SC----HHHHG----GGCSEEEE
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc-------CC----HHHHH----hcCCEEEE
Confidence            47899999999999999999999999 68888887766667777775432       01    22222    25789988


Q ss_pred             ccCCh-H----HHHHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFD-K----TMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~-~----~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      ++... +    .-...+..|+++..++.++...
T Consensus       227 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~  259 (351)
T 3jtm_A          227 NMPLTEKTRGMFNKELIGKLKKGVLIVNNARGA  259 (351)
T ss_dssp             CSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGG
T ss_pred             CCCCCHHHHHhhcHHHHhcCCCCCEEEECcCch
Confidence            77632 1    1246678899999999887543

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=95.80  E-value=0.058  Score=44.08  Aligned_cols=82  Identities=20%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCC------eEEEecCChhHHHHHH-Hc---CCC-EeeccCC-CCcchhHHHHHhh
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAP------RIIITDVDVQRLSIAR-NL---GAD-ETAKVST-DIEDVDTDVGKIQ  203 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~------~vv~v~~~~~~~~~~~-~~---g~~-~v~~~~~-~~~~~~~~i~~~~  203 (319)
                      ++++||+| +|.+|..+++.+...|..      .|+.+++++++.+.+. ++   +.. ..+..+- +.+++...+.++.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            46789998 699999998877777873      5777788776655433 22   321 1121121 1223333334443


Q ss_pred             hhcCCCccEEEEccCC
Q 020928          204 NAMGSGIDVSFDCVGF  219 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~  219 (319)
                      +. .+++|++|++.|.
T Consensus        82 ~~-~g~id~li~~Ag~   96 (244)
T 2bd0_A           82 ER-YGHIDCLVNNAGV   96 (244)
T ss_dssp             HH-TSCCSEEEECCCC
T ss_pred             Hh-CCCCCEEEEcCCc
Confidence            32 2479999999873

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=95.80  E-value=0.14  Score=40.96  Aligned_cols=97  Identities=12%  Similarity=0.071  Sum_probs=63.3

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++..||=+|+|. |..++.+|+...-..+++++.+++..+.+++    .+...+..+..   |... +....  ....+|
T Consensus        38 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~---d~~~-l~~~~--~~~~~d  110 (213)
T 2fca_A           38 DNPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNI---DADT-LTDVF--EPGEVK  110 (213)
T ss_dssp             CCCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECC---CGGG-HHHHC--CTTSCC
T ss_pred             CCceEEEEecCC-CHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeC---CHHH-HHhhc--CcCCcC
Confidence            567788889886 8888899998643489999999988777654    34432222222   2211 11111  134688


Q ss_pred             EEEEccCC--------------hHHHHHHHHhhcCCCEEEEe
Q 020928          212 VSFDCVGF--------------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       212 ~v~d~~g~--------------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      .|+-....              ...+..+.+.|+++|.++..
T Consensus       111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             EEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            88654332              34688899999999998865

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=95.80  E-value=0.035  Score=45.78  Aligned_cols=79  Identities=18%  Similarity=0.262  Sum_probs=48.4

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCC-EeeccCCC-CcchhHHHHHhhhhcCCCccEEE
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGAD-ETAKVSTD-IEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~-~v~~~~~~-~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      ++||+| +|++|.++++.+...|+ +|+.+++++++.+.+ ++++.. ..+..+-. .++....+.++.+. -+++|++|
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-~g~iD~lv   79 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE-WCNIDILV   79 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTT-TCCCCEEE
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHh-CCCCCEEE
Confidence            678888 69999999998888898 688888887765544 334422 12222211 12222223322221 24799999


Q ss_pred             EccCC
Q 020928          215 DCVGF  219 (319)
Q Consensus       215 d~~g~  219 (319)
                      ++.|.
T Consensus        80 nnAg~   84 (248)
T 3asu_A           80 NNAGL   84 (248)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99873

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=95.79  E-value=0.055  Score=44.23  Aligned_cols=105  Identities=16%  Similarity=0.151  Sum_probs=66.9

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhc-
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAM-  206 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~-  206 (319)
                      ...++++||-+|+|. |..++.+|+.+. -.++++++.+++..+.+++    .|....+.+  ...+..+.+..+.... 
T Consensus        67 ~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~--~~gda~~~l~~l~~~~~  143 (237)
T 3c3y_A           67 KLVNAKKTIEVGVFT-GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF--IESDAMLALDNLLQGQE  143 (237)
T ss_dssp             HHTTCCEEEEECCTT-SHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEE--EESCHHHHHHHHHHSTT
T ss_pred             HhhCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE--EEcCHHHHHHHHHhccC
Confidence            345678999999876 778888888863 2389999999988777765    344321111  1123333333332211 


Q ss_pred             -CCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEec
Q 020928          207 -GSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 -~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                       ...+|+||-....   ...+..+.+.|+++|.++.-.
T Consensus       144 ~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          144 SEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence             3579999854322   245778889999999887643

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=95.79  E-value=0.044  Score=46.19  Aligned_cols=82  Identities=21%  Similarity=0.245  Sum_probs=50.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH-----------HHHHHHcCCCEe-eccC-CCCcchhHHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-----------LSIARNLGADET-AKVS-TDIEDVDTDVGK  201 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~-----------~~~~~~~g~~~v-~~~~-~~~~~~~~~i~~  201 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++++++           .+.+++.+.... +..+ ++.++....+.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            467899998 59999999998888899 67777776542           222333443221 1111 222233334444


Q ss_pred             hhhhcCCCccEEEEccCC
Q 020928          202 IQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~  219 (319)
                      +.+.. +++|++|++.|.
T Consensus        87 ~~~~~-g~id~lvnnAg~  103 (285)
T 3sc4_A           87 TVEQF-GGIDICVNNASA  103 (285)
T ss_dssp             HHHHH-SCCSEEEECCCC
T ss_pred             HHHHc-CCCCEEEECCCC
Confidence            44333 479999999885

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.79  E-value=0.032  Score=46.71  Aligned_cols=82  Identities=22%  Similarity=0.301  Sum_probs=50.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc---C---CC-EeeccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL---G---AD-ETAKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~---g---~~-~v~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+.+++++++.+.+ +++   .   .. ..+..+ .+.++....+.++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            467899998 59999999998888898 688888887765543 223   2   11 111112 1222333333433332


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +++|++|++.|.
T Consensus        84 ~-g~id~lv~~Ag~   96 (278)
T 1spx_A           84 F-GKLDILVNNAGA   96 (278)
T ss_dssp             H-SCCCEEEECCC-
T ss_pred             c-CCCCEEEECCCC
Confidence            2 479999999874

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.78  E-value=0.084  Score=46.97  Aligned_cols=98  Identities=12%  Similarity=0.114  Sum_probs=61.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCC--CeEEEecCChhHHHHHH-HcCC-----CEeeccCCCCcchhHHHHHhhhhcCCC
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGA--PRIIITDVDVQRLSIAR-NLGA-----DETAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~--~~vv~v~~~~~~~~~~~-~~g~-----~~v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      .+|+|+|+|.+|..+++.+...|.  ..|++++++.++.+.+. +++.     ...+..+-.  + .+.+.++.+.  .+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~--d-~~~l~~~l~~--~~   76 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDAD--S-IEELVALINE--VK   76 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTT--C-HHHHHHHHHH--HC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCC--C-HHHHHHHHHh--hC
Confidence            378999999999999998877773  37888888888766443 3321     122222211  1 1233333321  15


Q ss_pred             ccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          210 IDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       210 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +|+||++++..........++..+-.++.+.
T Consensus        77 ~DvVin~ag~~~~~~v~~a~l~~g~~vvD~a  107 (405)
T 4ina_A           77 PQIVLNIALPYQDLTIMEACLRTGVPYLDTA  107 (405)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHTCCEEESS
T ss_pred             CCEEEECCCcccChHHHHHHHHhCCCEEEec
Confidence            8999999986544455566777777777653

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=95.78  E-value=0.014  Score=49.44  Aligned_cols=45  Identities=27%  Similarity=0.352  Sum_probs=37.7

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  180 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~  180 (319)
                      .++.+||-+|+|. |..++.+++..+...|++++.++.-.+.+++.
T Consensus        45 ~~~~~VLDiGCG~-G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           45 FRGRDVLDLGCNV-GHLTLSIACKWGPSRMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             TTTSEEEEESCTT-CHHHHHHHHHTCCSEEEEEESCHHHHHHHHHT
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence            4678999999876 88889999988666999999999888877763

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.78  E-value=0.014  Score=48.00  Aligned_cols=81  Identities=9%  Similarity=0.073  Sum_probs=45.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .++++||+| +|++|.++++.+.. |. .|+.+++++++.+.+.+......+..+-.+.+....+.+..+ .-+++|++|
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~~~~id~lv   80 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLK-NLDHVDTLV   80 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGT-TCSCCSEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHH-hcCCCCEEE
Confidence            367899998 59999988886655 77 788888888887776664322222111000000001111111 124799999


Q ss_pred             EccCC
Q 020928          215 DCVGF  219 (319)
Q Consensus       215 d~~g~  219 (319)
                      ++.|.
T Consensus        81 ~~Ag~   85 (245)
T 3e9n_A           81 HAAAV   85 (245)
T ss_dssp             ECC--
T ss_pred             ECCCc
Confidence            99985

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=95.78  E-value=0.024  Score=46.78  Aligned_cols=38  Identities=18%  Similarity=0.121  Sum_probs=28.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEE-ecCChhHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIII-TDVDVQRL  174 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~-v~~~~~~~  174 (319)
                      .++++||+| ++++|.++++.+...|+ .|++ ..+++++.
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~   45 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEA   45 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHH
Confidence            568899998 59999999998888898 4555 45554443

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.77  E-value=0.024  Score=46.72  Aligned_cols=77  Identities=21%  Similarity=0.264  Sum_probs=47.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .++++||+| +|.+|..+++.+...|+ +|+++++++++.+.+.  +  ...|+ .+.++....+.++.+.. +++|++|
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~-~~~~~~~~~~~~~~~~~-g~id~lv   86 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDV-TDSDAVDRAFTAVEEHQ-GPVEVLV   86 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCT-TCHHHHHHHHHHHHHHH-SSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccC-CCHHHHHHHHHHHHHHc-CCCCEEE
Confidence            467899998 69999999998888898 6777777654432111  1  11222 12223333333333322 4699999


Q ss_pred             EccCC
Q 020928          215 DCVGF  219 (319)
Q Consensus       215 d~~g~  219 (319)
                      ++.|.
T Consensus        87 ~~Ag~   91 (247)
T 1uzm_A           87 SNAGL   91 (247)
T ss_dssp             EECSC
T ss_pred             ECCCC
Confidence            99884

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.76  E-value=0.038  Score=45.73  Aligned_cols=79  Identities=18%  Similarity=0.351  Sum_probs=47.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCE-eeccCC-CCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE-TAKVST-DIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .++++||+| ++++|.++++.+...|+ .|+.+++..+  +..++++... .+..+- +.++....+..+.+  .+++|+
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~g~id~   82 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGE--DVVADLGDRARFAAADVTDEAAVASALDLAET--MGTLRI   82 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCH--HHHHHTCTTEEEEECCTTCHHHHHHHHHHHHH--HSCEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchH--HHHHhcCCceEEEECCCCCHHHHHHHHHHHHH--hCCCCE
Confidence            367899998 59999999988888898 6777766443  3344555322 222222 22233333333322  357999


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      ++++.|.
T Consensus        83 lv~nAg~   89 (257)
T 3tl3_A           83 VVNCAGT   89 (257)
T ss_dssp             EEECGGG
T ss_pred             EEECCCC
Confidence            9999984

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.75  E-value=0.073  Score=44.69  Aligned_cols=83  Identities=23%  Similarity=0.307  Sum_probs=50.8

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-ChhHHHHH----HHcCCCE-eeccC-CCCcchhHHHHHhhhhc
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA----RNLGADE-TAKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-~~~~~~~~----~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      -.++++||+| +|++|.++++.+...|+ .|+++++ ++++.+.+    ++.+... .+..+ .+.++....+.++.+..
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3578899998 69999999998888999 6766664 55543322    2234322 12112 22334444444444433


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                       +++|++|++.|.
T Consensus       106 -g~iD~lvnnAg~  117 (280)
T 4da9_A          106 -GRIDCLVNNAGI  117 (280)
T ss_dssp             -SCCCEEEEECC-
T ss_pred             -CCCCEEEECCCc
Confidence             479999999985

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.75  E-value=0.039  Score=46.07  Aligned_cols=84  Identities=13%  Similarity=0.134  Sum_probs=50.1

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCE-eeccC-CCCcchhHHHHHhhhhcC
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADE-TAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .+++++||+| +|++|.++++.+...|++.++...+++++.+.+.    +.+... .+..+ .+.++....+.++.+.. 
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-  102 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF-  102 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC-
Confidence            4567899998 6999999999888899943344466666544332    233221 11112 12223333444443333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus       103 g~id~li~nAg~  114 (272)
T 4e3z_A          103 GRLDGLVNNAGI  114 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=95.75  E-value=0.043  Score=45.39  Aligned_cols=82  Identities=17%  Similarity=0.201  Sum_probs=49.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-ChhHHHHH-H---HcCCCE-eeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA-R---NLGADE-TAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-~~~~~~~~-~---~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      .+.++||+| +|.+|..+++.+...|+ .|+.+++ ++++.+.+ +   +.+... .+..+- +.++....+.++.+.. 
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   83 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF-   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            367899998 69999999998888898 6777777 65544332 2   223221 121121 1223333333333322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        84 g~id~li~~Ag~   95 (261)
T 1gee_A           84 GKLDVMINNAGL   95 (261)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999873

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.74  E-value=0.072  Score=46.08  Aligned_cols=88  Identities=18%  Similarity=0.244  Sum_probs=61.7

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+.+|.|+|.|.+|...++.++..|. .|++.++++++ +..+++|...    .    +..+    +.    ...|+|+-
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~----~----~l~~----~l----~~aDvVil  210 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAEF----K----PLED----LL----RESDFVVL  210 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCEE----C----CHHH----HH----HHCSEEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCccc----C----CHHH----HH----hhCCEEEE
Confidence            46789999999999999999999998 78888888776 5555666421    1    2111    11    14688888


Q ss_pred             ccCChH----HH-HHHHHhhcCCCEEEEecc
Q 020928          216 CVGFDK----TM-STALNATRPGGKVCLIGL  241 (319)
Q Consensus       216 ~~g~~~----~~-~~~~~~l~~~G~~v~~g~  241 (319)
                      ++....    .+ ...+..|+++..++.++.
T Consensus       211 ~vp~~~~t~~~i~~~~~~~mk~~ailIn~sr  241 (334)
T 2dbq_A          211 AVPLTRETYHLINEERLKLMKKTAILINIAR  241 (334)
T ss_dssp             CCCCCTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             CCCCChHHHHhhCHHHHhcCCCCcEEEECCC
Confidence            887542    12 355677888888887763

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=95.74  E-value=0.13  Score=44.70  Aligned_cols=131  Identities=16%  Similarity=0.121  Sum_probs=78.2

Q ss_pred             CeEEEECCCHHHH-HHHHHHHHc-CCCeEEEecCChhHHH-HHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          138 TNVMIMGSGPIGL-VTLLAARAF-GAPRIIITDVDVQRLS-IARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       138 ~~vlI~G~g~vG~-~ai~la~~~-g~~~vv~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      -+|.|+|+|.+|. ..+..++.. ++..+.+.++++++.+ +++++|....-       +    +.++.+  ...+|+|+
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~-------~----~~~ll~--~~~~D~V~   94 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVE-------G----YPALLE--RDDVDAVY   94 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEE-------S----HHHHHT--CTTCSEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcC-------C----HHHHhc--CCCCCEEE
Confidence            4789999999997 555555554 6744446677776654 45567764321       2    222322  35799999


Q ss_pred             EccCChHHHHHHHHhhcCCCEEEEecccCCcccccc----hHHHhcCcEEE-Ee-eccCCCHHHHHHHHHcCCC
Q 020928          215 DCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVAL----TPAAAREVDVI-GI-FRYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~----~~~~~~~~~i~-~~-~~~~~~~~~~~~~~~~g~~  282 (319)
                      .|+........+..++..+-. +.+.-+.....-..    ...-.+++.+. ++ .++...++.+.+++++|.+
T Consensus        95 i~tp~~~h~~~~~~al~aGk~-Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~i  167 (350)
T 3rc1_A           95 VPLPAVLHAEWIDRALRAGKH-VLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLDEGVI  167 (350)
T ss_dssp             ECCCGGGHHHHHHHHHHTTCE-EEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHHTTTT
T ss_pred             ECCCcHHHHHHHHHHHHCCCc-EEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHhcCCC
Confidence            999988777778888876655 44542211111011    11223344433 22 2336678888999999887

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.74  E-value=0.039  Score=45.51  Aligned_cols=77  Identities=21%  Similarity=0.254  Sum_probs=48.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC-CCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST-DIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .++++||+| +|.+|.++++.+...|+ +|+.++++++.    ++.+. ..+..+- +.++....+.++.+. .+++|++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~-~~~~~D~~d~~~~~~~~~~~~~~-~g~id~l   78 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPF-ATEVMDVADAAQVAQVCQRLLAE-TERLDAL   78 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSS-EEEECCTTCHHHHHHHHHHHHHH-CSCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCc-eEEEcCCCCHHHHHHHHHHHHHH-cCCCCEE
Confidence            467899998 59999999998888998 67777776542    12332 2222222 222333344444333 3479999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        79 v~~Ag~   84 (250)
T 2fwm_X           79 VNAAGI   84 (250)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999884

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=95.74  E-value=0.086  Score=45.37  Aligned_cols=130  Identities=15%  Similarity=0.140  Sum_probs=74.3

Q ss_pred             eEEEECCCHHHHHH-H-HHHHHcCCCeEEEecCChhHHH-HHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          139 NVMIMGSGPIGLVT-L-LAARAFGAPRIIITDVDVQRLS-IARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       139 ~vlI~G~g~vG~~a-i-~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      +|.|+|+|.+|... + .+.+ .++..+.+.++++++.+ +.+++|...+  +    .++    .++..  ..++|+|+.
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~g~~~~--~----~~~----~~~l~--~~~~D~V~i   68 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENGIGKS--V----TSV----EELVG--DPDVDAVYV   68 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHTTCSCC--B----SCH----HHHHT--CTTCCEEEE
T ss_pred             eEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHcCCCcc--c----CCH----HHHhc--CCCCCEEEE
Confidence            58899999999876 5 4455 77744456677777654 4555665321  1    122    22221  246999999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEecccCCcccccchH----HHhcCcEEEEee--ccCCCHHHHHHHHHcCCC
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTP----AAAREVDVIGIF--RYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~----~~~~~~~i~~~~--~~~~~~~~~~~~~~~g~~  282 (319)
                      ++........+..++..+ +-+.+.-+.....-....    .-.+++.+.-..  .+...++.+.+++++|.+
T Consensus        69 ~tp~~~h~~~~~~al~~G-k~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~i  140 (332)
T 2glx_A           69 STTNELHREQTLAAIRAG-KHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAEGRI  140 (332)
T ss_dssp             CSCGGGHHHHHHHHHHTT-CEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHTTTT
T ss_pred             eCChhHhHHHHHHHHHCC-CeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHHcCCC
Confidence            999876777777788765 444443221111111111    112344333222  224457788888988876

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=95.74  E-value=0.073  Score=44.54  Aligned_cols=82  Identities=22%  Similarity=0.229  Sum_probs=49.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-------------ChhHHHHH----HHcCCCEe-eccC-CCCcch
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-------------DVQRLSIA----RNLGADET-AKVS-TDIEDV  195 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-------------~~~~~~~~----~~~g~~~v-~~~~-~~~~~~  195 (319)
                      .++++||+| ++++|.++++.+...|+ +|+.+++             +.++.+.+    ++.+.... +..+ .+.++.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   88 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL   88 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            468899998 69999999998888899 6777765             34333322    22332221 1112 122233


Q ss_pred             hHHHHHhhhhcCCCccEEEEccCC
Q 020928          196 DTDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       196 ~~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      ...+.++.+.. +++|+++++.|.
T Consensus        89 ~~~~~~~~~~~-g~id~lvnnAg~  111 (277)
T 3tsc_A           89 RKVVDDGVAAL-GRLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHH-SCCCEEEECCCC
T ss_pred             HHHHHHHHHHc-CCCCEEEECCCC
Confidence            33334443332 479999999985

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.73  E-value=0.023  Score=45.72  Aligned_cols=93  Identities=14%  Similarity=0.223  Sum_probs=56.7

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +|||+| +|.+|..+++.+...|. .|+++++++++.+.+   .-...+..+-  .+..+.+.+..    .++|+||.+.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~---~~~~~~~~D~--~d~~~~~~~~~----~~~d~vi~~a   71 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY---NNVKAVHFDV--DWTPEEMAKQL----HGMDAIINVS   71 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC---TTEEEEECCT--TSCHHHHHTTT----TTCSEEEECC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc---CCceEEEecc--cCCHHHHHHHH----cCCCEEEECC
Confidence            689998 69999999998888897 788888887654322   1112222111  12122333332    3699999999


Q ss_pred             CChH---------HHHHHHHhhcCC--CEEEEecc
Q 020928          218 GFDK---------TMSTALNATRPG--GKVCLIGL  241 (319)
Q Consensus       218 g~~~---------~~~~~~~~l~~~--G~~v~~g~  241 (319)
                      |...         ....+++.+...  ++++.++.
T Consensus        72 g~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS  106 (219)
T 3dqp_A           72 GSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST  106 (219)
T ss_dssp             CCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence            8531         133344444332  58888875

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.061  Score=45.42  Aligned_cols=83  Identities=20%  Similarity=0.306  Sum_probs=49.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCC--CeEEEecCChhHHHHHHH-c-----CCCE-eeccC-CCCcchhHHHHHhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGA--PRIIITDVDVQRLSIARN-L-----GADE-TAKVS-TDIEDVDTDVGKIQN  204 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~--~~vv~v~~~~~~~~~~~~-~-----g~~~-v~~~~-~~~~~~~~~i~~~~~  204 (319)
                      .++++||+| ++++|.+++..+...|+  ..|+.+++++++.+.+.+ +     +... .+..+ .+.++....+.++.+
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            467899998 59999988876655554  267788888776554432 2     2211 11112 223334444444433


Q ss_pred             hcCCCccEEEEccCC
Q 020928          205 AMGSGIDVSFDCVGF  219 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~  219 (319)
                      . -+++|++|++.|.
T Consensus       112 ~-~g~iD~lVnnAG~  125 (287)
T 3rku_A          112 E-FKDIDILVNNAGK  125 (287)
T ss_dssp             G-GCSCCEEEECCCC
T ss_pred             h-cCCCCEEEECCCc
Confidence            2 2479999999883

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=95.71  E-value=0.039  Score=42.22  Aligned_cols=102  Identities=19%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      ..++++++||-+|+|. |..+..+++..|. ..+++++.++ ..+.    .-...+..+....+....+....  ....+
T Consensus        18 ~~~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d~~~~~~~~~~~~~~--~~~~~   89 (180)
T 1ej0_A           18 KLFKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGDFRDELVMKALLERV--GDSKV   89 (180)
T ss_dssp             CCCCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESCTTSHHHHHHHHHHH--TTCCE
T ss_pred             CCCCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEcccccchhhhhhhccC--CCCce
Confidence            3478899999999887 8888888888642 3899998876 3221    11111111111111111111111  24579


Q ss_pred             cEEEEc-----cCC------------hHHHHHHHHhhcCCCEEEEecc
Q 020928          211 DVSFDC-----VGF------------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       211 d~v~d~-----~g~------------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      |+|+..     .+.            ...+..+.+.|+++|+++....
T Consensus        90 D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            999873     332            2467788899999999987543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.70  E-value=0.11  Score=44.48  Aligned_cols=45  Identities=16%  Similarity=0.192  Sum_probs=38.9

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  182 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~  182 (319)
                      -.+|.|+|.|.+|....+.+...|. .|.+.++++++.+.+.+.|.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~   65 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGA   65 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCC
Confidence            3579999999999999998888898 78889999998888877765

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=95.70  E-value=0.072  Score=45.02  Aligned_cols=40  Identities=10%  Similarity=0.089  Sum_probs=31.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEec-CChhHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLSI  176 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~-~~~~~~~~  176 (319)
                      .++++||+| +|++|.++++.+...|+ .|+.++ +++++.+.
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~   49 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANA   49 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHH
Confidence            467889998 69999999998888898 677777 77765443

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.69  E-value=0.06  Score=48.82  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=58.6

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      ++.+|+|+|+|.+|.+++..+... +. .|++++++.++.+.+.+ .+.. .+..+-.  +. +.+.++.    .++|+|
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~-~~~~D~~--d~-~~l~~~l----~~~DvV   92 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSK-AISLDVT--DD-SALDKVL----ADNDVV   92 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCE-EEECCTT--CH-HHHHHHH----HTSSEE
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCc-EEEEecC--CH-HHHHHHH----cCCCEE
Confidence            356899999999999999887777 66 68888888887665543 2332 1111111  11 1232222    268999


Q ss_pred             EEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          214 FDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ++|++..........++.++-.++..
T Consensus        93 In~tp~~~~~~v~~a~l~~g~~vvd~  118 (467)
T 2axq_A           93 ISLIPYTFHPNVVKSAIRTKTDVVTS  118 (467)
T ss_dssp             EECSCGGGHHHHHHHHHHHTCEEEEC
T ss_pred             EECCchhhhHHHHHHHHhcCCEEEEe
Confidence            99998642223344566666666654

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=95.68  E-value=0.05  Score=45.26  Aligned_cols=83  Identities=13%  Similarity=0.026  Sum_probs=48.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HH---HcCCC-EeeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-AR---NLGAD-ETAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-~~---~~g~~-~v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++||+| +|++|..+++.+...|++.++...++.++.+. ++   +.+.. ..+..+- +.++....+.++.+.. +
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g  103 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH-G  103 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-C
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh-C
Confidence            357899998 69999999998888999544545555544332 22   22322 2222222 2223333333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      .+|++|++.|.
T Consensus       104 ~id~li~nAg~  114 (267)
T 4iiu_A          104 AWYGVVSNAGI  114 (267)
T ss_dssp             CCSEEEECCCC
T ss_pred             CccEEEECCCC
Confidence            79999999884

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.68  E-value=0.12  Score=43.21  Aligned_cols=86  Identities=17%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|.|+|+|.+|.+.+..+...|. .|++.++++++.+.+++.|..... . .   +    +   .+ . .+.|+||-++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~-~-~---~----~---~~-~-~~~D~vi~av~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEA-G-Q---D----L---SL-L-QTAKIIFLCTP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEE-E-S---C----G---GG-G-TTCSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccc-c-C---C----H---HH-h-CCCCEEEEECC
Confidence            58899999999999988888898 788889999888887777753110 0 0   1    1   11 1 36789998888


Q ss_pred             ChHHHHHHHH----hhcCCCEEEEec
Q 020928          219 FDKTMSTALN----ATRPGGKVCLIG  240 (319)
Q Consensus       219 ~~~~~~~~~~----~l~~~G~~v~~g  240 (319)
                      .. .....++    .++++..++.++
T Consensus        67 ~~-~~~~~~~~l~~~~~~~~~vv~~~   91 (279)
T 2f1k_A           67 IQ-LILPTLEKLIPHLSPTAIVTDVA   91 (279)
T ss_dssp             HH-HHHHHHHHHGGGSCTTCEEEECC
T ss_pred             HH-HHHHHHHHHHhhCCCCCEEEECC
Confidence            54 3333333    345555666553

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.67  E-value=0.011  Score=50.54  Aligned_cols=100  Identities=14%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC--------CEeeccCCCCcchhHHHHHhhh
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA--------DETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~--------~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ...++.+||++|+|. |..+..+++..+..++++++.+++..+.+++.-.        ..+...   ..|..+.+.    
T Consensus        92 ~~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~---~~Da~~~l~----  163 (304)
T 2o07_A           92 SHPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLH---VGDGFEFMK----  163 (304)
T ss_dssp             TSSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE---ESCHHHHHH----
T ss_pred             hCCCCCEEEEECCCc-hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEE---ECcHHHHHh----
Confidence            345678999998765 7777788887655589999999998888876311        111111   122222221    


Q ss_pred             hcCCCccEEEEccCC----------hHHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFDCVGF----------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .....+|+||-....          .+.++.+.+.|+++|.++.-.
T Consensus       164 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          164 QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             hCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            124579998743222          236788899999999988653

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=95.66  E-value=0.021  Score=49.25  Aligned_cols=99  Identities=18%  Similarity=0.194  Sum_probs=64.6

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-------EeeccCCCCcchhHHHHHhhhhcC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-------ETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-------~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      +++.+||++|+|. |..+..+++..+...|++++.+++..+.+++.-..       .-+.+  ...|..+.+.    ...
T Consensus       115 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~--~~~D~~~~l~----~~~  187 (321)
T 2pt6_A          115 KEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNV--FIEDASKFLE----NVT  187 (321)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEE--EESCHHHHHH----HCC
T ss_pred             CCCCEEEEEcCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEE--EEccHHHHHh----hcC
Confidence            4568999998766 66777888776555899999999999988873211       00010  1123222221    124


Q ss_pred             CCccEEEEccC----------ChHHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSFDCVG----------FDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~d~~g----------~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+|+|+-...          ..+.++.+.+.|+++|.++.-.
T Consensus       188 ~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          188 NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             SCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            57999874331          1356788899999999998753

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.66  E-value=0.087  Score=40.98  Aligned_cols=102  Identities=11%  Similarity=0.229  Sum_probs=66.8

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCE--eeccCCCCcchhHHHHH
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADE--TAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~--v~~~~~~~~~~~~~i~~  201 (319)
                      .++....+++.+||-+|+|. |..+..+++. +. .+++++.+++..+.+++.    +...  +.....   +....   
T Consensus        44 l~~~~~~~~~~~vLdiG~G~-G~~~~~~~~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~---d~~~~---  114 (194)
T 1dus_A           44 LVENVVVDKDDDILDLGCGY-GVIGIALADE-VK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHS---DLYEN---  114 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC---STTTT---
T ss_pred             HHHHcccCCCCeEEEeCCCC-CHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC---chhcc---
Confidence            34556777899999999875 7777788877 65 899999999887777653    3321  111111   11111   


Q ss_pred             hhhhcCCCccEEEEccCC-------hHHHHHHHHhhcCCCEEEEecc
Q 020928          202 IQNAMGSGIDVSFDCVGF-------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~-------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +   ....+|+|+-...-       ...+..+.+.|+++|+++....
T Consensus       115 ~---~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          115 V---KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             C---TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c---ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            1   13579999864431       1356777889999999987654

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.65  E-value=0.034  Score=49.11  Aligned_cols=90  Identities=17%  Similarity=0.150  Sum_probs=62.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.++.|+|.|.+|..+++.++.+|. +|++.+++..+.+..+++|+...   .    +    +.++.    ...|+|+-
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~~~---~----~----l~ell----~~aDvV~l  253 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH---A----T----REDMY----PVCDVVTL  253 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC---S----S----HHHHG----GGCSEEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCceec---C----C----HHHHH----hcCCEEEE
Confidence            57899999999999999999999998 78888887665566666675321   0    1    11221    24688887


Q ss_pred             ccCChH----HH-HHHHHhhcCCCEEEEecc
Q 020928          216 CVGFDK----TM-STALNATRPGGKVCLIGL  241 (319)
Q Consensus       216 ~~g~~~----~~-~~~~~~l~~~G~~v~~g~  241 (319)
                      ++....    .+ ...+..|+++..++.++.
T Consensus       254 ~~Plt~~t~~li~~~~l~~mk~gailIN~aR  284 (393)
T 2nac_A          254 NCPLHPETEHMINDETLKLFKRGAYIVNTAR  284 (393)
T ss_dssp             CSCCCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             ecCCchHHHHHhhHHHHhhCCCCCEEEECCC
Confidence            766321    12 355677888887887764

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=95.65  E-value=0.041  Score=45.30  Aligned_cols=82  Identities=23%  Similarity=0.233  Sum_probs=49.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC-hhHHHH-HHH---cCCCE-eeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD-VQRLSI-ARN---LGADE-TAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~-~~~~~~-~~~---~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      .+.++||+| +|.+|..++..+...|+ .|+.++++ +++.+. .++   .+... .+..+- +.++....+.++.+.. 
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   83 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKF-   83 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            357899998 59999999998888898 67777776 544332 222   23221 121121 2223333333333322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        84 g~id~vi~~Ag~   95 (258)
T 3afn_B           84 GGIDVLINNAGG   95 (258)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=95.64  E-value=0.041  Score=44.17  Aligned_cols=100  Identities=20%  Similarity=0.237  Sum_probs=66.3

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      ...++.+||-+|+|. |..+..+++. |. .+++++.++...+.+++.+.......     ++.. +.......+..+|+
T Consensus        49 ~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~~~~~fD~  119 (227)
T 3e8s_A           49 LGRQPERVLDLGCGE-GWLLRALADR-GI-EAVGVDGDRTLVDAARAAGAGEVHLA-----SYAQ-LAEAKVPVGKDYDL  119 (227)
T ss_dssp             HHTCCSEEEEETCTT-CHHHHHHHTT-TC-EEEEEESCHHHHHHHHHTCSSCEEEC-----CHHH-HHTTCSCCCCCEEE
T ss_pred             hcCCCCEEEEeCCCC-CHHHHHHHHC-CC-EEEEEcCCHHHHHHHHHhcccccchh-----hHHh-hcccccccCCCccE
Confidence            345678999999876 7777777776 77 79999999999998888643222211     1111 11001112345999


Q ss_pred             EEEccCC-----hHHHHHHHHhhcCCCEEEEecc
Q 020928          213 SFDCVGF-----DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       213 v~d~~g~-----~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      |+....-     ...+..+.+.|+++|+++....
T Consensus       120 v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          120 ICANFALLHQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             EEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            9864321     2578889999999999987643

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=95.64  E-value=0.068  Score=46.07  Aligned_cols=40  Identities=10%  Similarity=0.089  Sum_probs=32.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEec-CChhHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLSI  176 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~-~~~~~~~~  176 (319)
                      .+.++||+| +|++|.++++.+...|+ .|+.++ +++++.+.
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~   86 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANA   86 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHH
Confidence            467899998 69999999998888998 677777 77765543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=95.64  E-value=0.023  Score=48.04  Aligned_cols=101  Identities=19%  Similarity=0.201  Sum_probs=65.4

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc-CC------CEeeccCCCCcchhHHHHHhhhh
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL-GA------DETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~-g~------~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ..+++.+||++|+|. |..+..+++..+..++++++.+++..+.+++. ..      +.-+.+  ...|....+..    
T Consensus        75 ~~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~--~~~D~~~~l~~----  147 (283)
T 2i7c_A           75 VSKEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNV--FIEDASKFLEN----  147 (283)
T ss_dssp             TSSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEE--EESCHHHHHHH----
T ss_pred             cCCCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEE--EECChHHHHHh----
Confidence            345678999998765 66777777766555899999999998888873 21      000010  11232222221    


Q ss_pred             cCCCccEEEEccCC----------hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVGF----------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+|+-....          .+.++.+.+.|+++|.++...
T Consensus       148 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          148 VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            24679998752211          357788999999999998764

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=95.63  E-value=0.14  Score=44.14  Aligned_cols=129  Identities=19%  Similarity=0.246  Sum_probs=77.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHH-HHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          139 NVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLS-IARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +|.|+|+|.+|...+..++.. ++..+.+.++++++.+ +.+++|..    +.    ++.    ++..  ...+|+|+.|
T Consensus         5 ~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~----~~----~~~----~~l~--~~~~D~V~i~   70 (331)
T 4hkt_A            5 RFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE----VR----TID----AIEA--AADIDAVVIC   70 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE----EC----CHH----HHHH--CTTCCEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC----cC----CHH----HHhc--CCCCCEEEEe
Confidence            688999999998877766654 6644446677777655 44556653    21    222    2222  3469999999


Q ss_pred             cCChHHHHHHHHhhcCCCEEEEecccCCcccccc----hHHHhcCcEEEEee--ccCCCHHHHHHHHHcCCC
Q 020928          217 VGFDKTMSTALNATRPGGKVCLIGLAKTEMTVAL----TPAAAREVDVIGIF--RYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       217 ~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~----~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~g~~  282 (319)
                      +....+...+..++..+-. +.+.-+.....-..    ...-.+++.+.-..  .+...++.+.+++++|.+
T Consensus        71 tp~~~h~~~~~~al~~gk~-v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~i  141 (331)
T 4hkt_A           71 TPTDTHADLIERFARAGKA-IFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDDGRI  141 (331)
T ss_dssp             SCGGGHHHHHHHHHHTTCE-EEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHTTTT
T ss_pred             CCchhHHHHHHHHHHcCCc-EEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHcCCC
Confidence            9987777778888877644 44432211111111    11222344333222  235567888899999887

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.62  E-value=0.039  Score=49.89  Aligned_cols=104  Identities=19%  Similarity=0.249  Sum_probs=66.5

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ...+++++++||-.|+|+ |..+.+++...+- ..|++++.++.+.+.+++    +|...+.....+..++.   ..+  
T Consensus       253 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~---~~~--  326 (450)
T 2yxl_A          253 IVLDPKPGETVVDLAAAP-GGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP---EII--  326 (450)
T ss_dssp             HHHCCCTTCEEEESSCTT-CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS---SSS--
T ss_pred             HhcCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc---hhh--
Confidence            345788999999988777 7777788887643 489999999998877654    46533322211111110   001  


Q ss_pred             hcCCCccEEEE---ccCC-------------------------hHHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFD---CVGF-------------------------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                       .+..||.|+-   |.|.                         ...+..+.+.|+++|+++...
T Consensus       327 -~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t  389 (450)
T 2yxl_A          327 -GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT  389 (450)
T ss_dssp             -CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence             1246999874   3332                         235677888899999988653

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=95.62  E-value=0.094  Score=42.75  Aligned_cols=101  Identities=10%  Similarity=0.075  Sum_probs=59.5

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHH----HHHcCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSI----ARNLGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~----~~~~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ...+++|++||=.|+|+ |..+..+|+..| -..|++++.++...+.    +++..--..+.-+......      . ..
T Consensus        71 ~~~l~~g~~VLDlG~Gt-G~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~------~-~~  142 (232)
T 3id6_C           71 TNPIRKGTKVLYLGAAS-GTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQS------Y-KS  142 (232)
T ss_dssp             CCSCCTTCEEEEETCTT-SHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGG------T-TT
T ss_pred             hcCCCCCCEEEEEeecC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchh------h-hc
Confidence            35689999999999876 667778887765 2379999999976432    2222111111111111000      0 00


Q ss_pred             cCCCccEEEEccCChHH---HH-HHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSFDCVGFDKT---MS-TALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~~~---~~-~~~~~l~~~G~~v~~  239 (319)
                      ....+|+||-....+..   +. .+.+.|+++|+++..
T Consensus       143 ~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          143 VVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            13479999876654422   22 333489999999865

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.62  E-value=0.02  Score=46.70  Aligned_cols=95  Identities=9%  Similarity=0.127  Sum_probs=58.0

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+|||+| +|.+|..+++.+...| . .|+++++++++.+.+...+. .++..+-.  + .+.+.++.    .++|+||.
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~-~~~~~Dl~--d-~~~~~~~~----~~~D~vv~   94 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNS-QIIMGDVL--N-HAALKQAM----QGQDIVYA   94 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTE-EEEECCTT--C-HHHHHHHH----TTCSEEEE
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCc-EEEEecCC--C-HHHHHHHh----cCCCEEEE
Confidence            5799998 6999999999888888 6 78888887765432211121 11111111  2 12333332    26899999


Q ss_pred             ccCChHH---HHHHHHhhcC--CCEEEEecc
Q 020928          216 CVGFDKT---MSTALNATRP--GGKVCLIGL  241 (319)
Q Consensus       216 ~~g~~~~---~~~~~~~l~~--~G~~v~~g~  241 (319)
                      +.+....   .+.+++.++.  .++++.++.
T Consensus        95 ~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS  125 (236)
T 3qvo_A           95 NLTGEDLDIQANSVIAAMKACDVKRLIFVLS  125 (236)
T ss_dssp             ECCSTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cCCCCchhHHHHHHHHHHHHcCCCEEEEEec
Confidence            9887532   3344555533  368988875

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.62  E-value=0.15  Score=47.98  Aligned_cols=103  Identities=17%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh---------hHHH-H---HHHcCCCEeeccCCCCcchhHHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV---------QRLS-I---ARNLGADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~---------~~~~-~---~~~~g~~~v~~~~~~~~~~~~~i~~  201 (319)
                      .+++++|+| ++++|.+..+.+...|+ +|++.+++.         ++.+ .   +++.|...+.++. +..+....+.+
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~-d~~~~~~~v~~   84 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYN-NVLDGDKIVET   84 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC-----------CHHHHHHHHHHHTTCEEEEECC-CTTCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcC-CHHHHHHHHHH
Confidence            467788888 59999999998888999 677766543         2222 2   2333443333432 22333444444


Q ss_pred             hhhhcCCCccEEEEccCCh-------------------------HHHHHHHHhhc--CCCEEEEecc
Q 020928          202 IQNAMGSGIDVSFDCVGFD-------------------------KTMSTALNATR--PGGKVCLIGL  241 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~  241 (319)
                      ..+.. +.+|+++++.|..                         ...+.+++.|+  .+|+++.+++
T Consensus        85 ~~~~~-G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS  150 (604)
T 2et6_A           85 AVKNF-GTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSS  150 (604)
T ss_dssp             HHHHH-SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HHHHc-CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            44433 4799999999852                         12345566663  4689998874

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.62  E-value=0.059  Score=45.54  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      ...+|+|+|+|++|..+++.+.+.|+.++..+|...
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            446999999999999999988889998888887654

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=95.61  E-value=0.066  Score=45.90  Aligned_cols=83  Identities=18%  Similarity=0.232  Sum_probs=49.8

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC------------hhHHH----HHHHcCCCEe-eccC-CCCcch
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD------------VQRLS----IARNLGADET-AKVS-TDIEDV  195 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~------------~~~~~----~~~~~g~~~v-~~~~-~~~~~~  195 (319)
                      -.++++||+| ++++|.++++.+...|+ .|++++++            .++.+    .+++.+.... +..+ .+.++.
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASL  122 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            3578899998 69999999998888899 67776554            33322    2233343222 1112 122233


Q ss_pred             hHHHHHhhhhcCCCccEEEEccCC
Q 020928          196 DTDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       196 ~~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      ...+.++.+.. +++|++|++.|.
T Consensus       123 ~~~~~~~~~~~-g~iD~lVnnAg~  145 (317)
T 3oec_A          123 QAVVDEALAEF-GHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHHH-SCCCEEEECCCC
T ss_pred             HHHHHHHHHHc-CCCCEEEECCCC
Confidence            33444443333 479999999984

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.60  E-value=0.038  Score=45.86  Aligned_cols=81  Identities=16%  Similarity=0.182  Sum_probs=48.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHHHHHc----CCC-EeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIARNL----GAD-ETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~~~~~----g~~-~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +|++|..+++.+...|+ .|+.+ .+.++..+.+++.    +.. ..+..+ .+.++....+.++.+.. 
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-   83 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHF-   83 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh-
Confidence            357899998 59999999998888899 56665 4445544444432    211 112112 22223333444444332 


Q ss_pred             CCccEEEEccC
Q 020928          208 SGIDVSFDCVG  218 (319)
Q Consensus       208 ~~~d~v~d~~g  218 (319)
                      +++|++|++.|
T Consensus        84 g~id~lv~~Ag   94 (264)
T 3i4f_A           84 GKIDFLINNAG   94 (264)
T ss_dssp             SCCCEEECCCC
T ss_pred             CCCCEEEECCc
Confidence            47999999999

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.60  E-value=0.06  Score=44.05  Aligned_cols=82  Identities=22%  Similarity=0.319  Sum_probs=46.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHH----HHHcCCCE-eeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSI----ARNLGADE-TAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~----~~~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      .+.++||+| +|.+|..+++.+...|+ .|+++ .+++++.+.    +++.+... .+..+- +.++....+.++.+.. 
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   81 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF-   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhc-
Confidence            367899998 59999999998888898 56666 555444332    22234322 122221 1222333333333322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        82 ~~~d~vi~~Ag~   93 (247)
T 2hq1_A           82 GRIDILVNNAGI   93 (247)
T ss_dssp             SCCCEEEECC--
T ss_pred             CCCCEEEECCCC
Confidence            479999999875

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.60  E-value=0.046  Score=45.04  Aligned_cols=99  Identities=15%  Similarity=0.263  Sum_probs=67.3

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCE-eeccCCCCcchhHHHHHhhhhc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADE-TAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~-v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      ..++++.+||-+|+|. |..+..+++..+. .|++++.++...+.+++    .+... +.....   +.    ..+. ..
T Consensus        42 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~---d~----~~~~-~~  111 (257)
T 3f4k_A           42 NELTDDAKIADIGCGT-GGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITG---SM----DNLP-FQ  111 (257)
T ss_dssp             CCCCTTCEEEEETCTT-SHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC---CT----TSCS-SC
T ss_pred             hcCCCCCeEEEeCCCC-CHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC---Ch----hhCC-CC
Confidence            4678999999999887 8899999998876 89999999988777655    33221 111111   11    0111 01


Q ss_pred             CCCccEEEEc-----cCChHHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSFDC-----VGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~d~-----~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...+|+|+..     ..-...+..+.+.|+|+|+++...
T Consensus       112 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          112 NEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             TTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            3579999643     222346788888999999998765

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.59  E-value=0.052  Score=49.02  Aligned_cols=101  Identities=15%  Similarity=0.206  Sum_probs=64.1

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ...++++++||=.|+|+ |..++++|...+ ...|++++.++++.+.+++    +|...+.....   |...    +...
T Consensus       100 ~L~~~~g~~VLDlcaGp-Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~---Da~~----l~~~  171 (456)
T 3m4x_A          100 AAAAKPGEKVLDLCAAP-GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNH---APAE----LVPH  171 (456)
T ss_dssp             HHCCCTTCEEEESSCTT-CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECC---CHHH----HHHH
T ss_pred             HcCCCCCCEEEEECCCc-CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC---CHHH----hhhh
Confidence            35688999998887655 556667776643 2379999999998877654    56554332222   2221    1111


Q ss_pred             cCCCccEEEE---ccCCh-------------------------HHHHHHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSFD---CVGFD-------------------------KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~d---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~  239 (319)
                      ....||.|+-   |.|..                         ..+..+++.|+++|+++..
T Consensus       172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs  233 (456)
T 3m4x_A          172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYS  233 (456)
T ss_dssp             HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            1457999864   33321                         3567788899999998753

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.59  E-value=0.028  Score=47.33  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +|||+| +|.+|..+++.+... |. .|+++++++++...+...+... +..+-.  +. +.+.+..    .++|+||.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~-~~~D~~--d~-~~l~~~~----~~~d~vi~~   72 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSV-RQLDYF--NQ-ESMVEAF----KGMDTVVFI   72 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEE-EECCTT--CH-HHHHHHT----TTCSEEEEC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEE-EEcCCC--CH-HHHHHHH----hCCCEEEEe
Confidence            589998 599999999987776 77 5777778776644333333322 221111  21 2333332    379999999


Q ss_pred             cCCh-------HHHHHHHHhhcCC--CEEEEecccC
Q 020928          217 VGFD-------KTMSTALNATRPG--GKVCLIGLAK  243 (319)
Q Consensus       217 ~g~~-------~~~~~~~~~l~~~--G~~v~~g~~~  243 (319)
                      .+..       .....+++.+...  ++++.++...
T Consensus        73 a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           73 PSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            8852       1233445555433  4788877543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=95.58  E-value=0.078  Score=45.20  Aligned_cols=100  Identities=18%  Similarity=0.143  Sum_probs=65.2

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC--------CCEeeccCCCCcchhHHHHHhhhh
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG--------ADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g--------~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      .+++.+||++|+|. |..+..+++..+...|++++.+++..+.+++.-        ...+...   ..|....+..   .
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~---~~D~~~~~~~---~  165 (304)
T 3bwc_A           93 HPKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVR---VGDGLAFVRQ---T  165 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE---ESCHHHHHHS---S
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEE---ECcHHHHHHh---c
Confidence            46778999998776 777778887765558999999999888887632        0111111   1132222111   0


Q ss_pred             cCCCccEEEEccCC----------hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVGF----------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+|+-....          .+.+..+.+.|+++|.++...
T Consensus       166 ~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             CTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            24579998754321          246788899999999998764

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=95.56  E-value=0.026  Score=46.62  Aligned_cols=102  Identities=20%  Similarity=0.210  Sum_probs=68.3

Q ss_pred             HHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-EeeccCCCCcchhHHHHHhhhh
Q 020928          127 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       127 ~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ..+.....+++.+||-+|+|. |..+..+++......+++++.+++..+.+++.... ..+..     +..    .+.  
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-----d~~----~~~--   91 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGP-GNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKA-----DLA----TWK--   91 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTT-THHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEEC-----CTT----TCC--
T ss_pred             HHHHhcCCCCCCEEEEecCcC-CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEEC-----Chh----hcC--
Confidence            344556678899999999875 77888888876333799999999988888775211 11111     111    111  


Q ss_pred             cCCCccEEEEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+|+....-      ...+..+.+.|+++|+++...
T Consensus        92 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           92 PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            14579999865421      235677888999999988654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.56  E-value=0.05  Score=47.38  Aligned_cols=89  Identities=19%  Similarity=0.191  Sum_probs=61.6

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.+++. +.+.+.+.|...+       .+    +.++.    ...|+|+-
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~~-------~~----l~ell----~~aDiV~l  221 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAVA-------ES----KDALF----EQSDVLSV  221 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEEC-------SS----HHHHH----HHCSEEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceEe-------CC----HHHHH----hhCCEEEE
Confidence            36789999999999999999999999 788888765 3455556675321       01    12222    24688887


Q ss_pred             ccCChH-----HHHHHHHhhcCCCEEEEecc
Q 020928          216 CVGFDK-----TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       216 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ++....     .-...+..|+++..++.++.
T Consensus       222 ~~Plt~~t~~li~~~~l~~mk~gailIN~aR  252 (352)
T 3gg9_A          222 HLRLNDETRSIITVADLTRMKPTALFVNTSR  252 (352)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred             eccCcHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence            775321     12356778899999988874

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=95.55  E-value=0.064  Score=46.19  Aligned_cols=81  Identities=22%  Similarity=0.279  Sum_probs=49.1

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC-----hhHHHHHH----HcCCC-EeeccC-CCCcchhHHHHHhhh
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD-----VQRLSIAR----NLGAD-ETAKVS-TDIEDVDTDVGKIQN  204 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~-----~~~~~~~~----~~g~~-~v~~~~-~~~~~~~~~i~~~~~  204 (319)
                      ++++||+| +|++|..+++.+...|+ +|+++.++     +++.+.+.    +.+.. ..+..+ ++.+++...+.++.+
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            57899998 59999999998888999 67765443     33333332    23322 122222 222344444444444


Q ss_pred             hcCCCccEEEEccCC
Q 020928          205 AMGSGIDVSFDCVGF  219 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~  219 (319)
                      .. +++|+++++.|.
T Consensus        84 ~~-g~iD~lVnnAG~   97 (324)
T 3u9l_A           84 ED-GRIDVLIHNAGH   97 (324)
T ss_dssp             HH-SCCSEEEECCCC
T ss_pred             Hc-CCCCEEEECCCc
Confidence            33 479999999983

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=95.55  E-value=0.062  Score=43.86  Aligned_cols=81  Identities=20%  Similarity=0.248  Sum_probs=48.3

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEE-ecCChhHHHHHH----HcCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIII-TDVDVQRLSIAR----NLGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~-v~~~~~~~~~~~----~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      ++++||+| +|.+|..+++.+...|+ .|++ ..+++++.+.+.    +.+... .+..+ .+.++....+.++.+. -+
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~g   78 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDA-WG   78 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHH-SS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHH-cC
Confidence            46789998 69999999998888998 5665 567766544332    223221 11111 1222333333333332 24


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        79 ~id~li~~Ag~   89 (244)
T 1edo_A           79 TIDVVVNNAGI   89 (244)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.54  E-value=0.0096  Score=48.72  Aligned_cols=99  Identities=11%  Similarity=0.048  Sum_probs=63.2

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC---CEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA---DETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .+++.+||-+|+|. |..+..+++. +...|++++.+++..+.+++...   ..+..+   ..+..+....+   ....+
T Consensus        58 ~~~~~~vLDiGcGt-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~---~~d~~~~~~~~---~~~~f  129 (236)
T 1zx0_A           58 SSKGGRVLEVGFGM-AIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPL---KGLWEDVAPTL---PDGHF  129 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEE---ESCHHHHGGGS---CTTCE
T ss_pred             CCCCCeEEEEeccC-CHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEE---ecCHHHhhccc---CCCce
Confidence            56788999999876 7777777654 43479999999998888876321   122111   11222211111   23579


Q ss_pred             cEEEE-ccC----Ch------HHHHHHHHhhcCCCEEEEec
Q 020928          211 DVSFD-CVG----FD------KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       211 d~v~d-~~g----~~------~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |+|+- +.+    ..      ..+..+.+.|+++|+++.+.
T Consensus       130 D~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            99987 322    11      23677889999999998764

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=95.53  E-value=0.061  Score=50.68  Aligned_cols=81  Identities=16%  Similarity=0.244  Sum_probs=43.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC---------ChhHHH----HHHHcCCCEeeccCCCCcchhHHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV---------DVQRLS----IARNLGADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~---------~~~~~~----~~~~~g~~~v~~~~~~~~~~~~~i~~  201 (319)
                      .++++||+| ++++|.+++..+...|+ +|+++++         +.++.+    .+++.+...+.++. +..+....+.+
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~-d~~~~~~~~~~   95 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYN-SVIDGAKVIET   95 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCEEECCC-CGGGHHHHHC-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeC-CHHHHHHHHHH
Confidence            467888888 59999999998888899 6777755         332222    23334544444432 22333334444


Q ss_pred             hhhhcCCCccEEEEccCC
Q 020928          202 IQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~  219 (319)
                      +.+. -+.+|++|++.|.
T Consensus        96 ~~~~-~g~iDiLVnnAGi  112 (613)
T 3oml_A           96 AIKA-FGRVDILVNNAGI  112 (613)
T ss_dssp             ----------CEECCCCC
T ss_pred             HHHH-CCCCcEEEECCCC
Confidence            3332 2479999999985

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=95.53  E-value=0.035  Score=44.33  Aligned_cols=94  Identities=15%  Similarity=0.163  Sum_probs=64.6

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc-CCCEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL-GADETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      ..++++.+||-+|+|. |..+..+++. |. .+++++.++...+.+++. +.... .     .++.    .+.  ....+
T Consensus        39 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~-~-----~d~~----~~~--~~~~f  103 (211)
T 3e23_A           39 GELPAGAKILELGCGA-GYQAEAMLAA-GF-DVDATDGSPELAAEASRRLGRPVR-T-----MLFH----QLD--AIDAY  103 (211)
T ss_dssp             TTSCTTCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHTSCCE-E-----CCGG----GCC--CCSCE
T ss_pred             HhcCCCCcEEEECCCC-CHHHHHHHHc-CC-eEEEECCCHHHHHHHHHhcCCceE-E-----eeec----cCC--CCCcE
Confidence            4577889999999876 7777777776 76 899999999988888774 32221 1     1111    111  24679


Q ss_pred             cEEEEccCC--------hHHHHHHHHhhcCCCEEEEec
Q 020928          211 DVSFDCVGF--------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       211 d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |+|+....-        ...+..+.+.|+++|+++...
T Consensus       104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  141 (211)
T 3e23_A          104 DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY  141 (211)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999865321        135778888999999988763

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.53  E-value=0.037  Score=45.80  Aligned_cols=76  Identities=21%  Similarity=0.227  Sum_probs=47.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC-CCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST-DIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .++++||+| +|.+|.++++.+...|+ +|+.+++++++.+.      ...+..+- +.++....+.++.+. .+.+|++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~------~~~~~~Dl~d~~~v~~~~~~~~~~-~g~iD~l   91 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG------FLAVKCDITDTEQVEQAYKEIEET-HGPVEVL   91 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT------SEEEECCTTSHHHHHHHHHHHHHH-TCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc------ceEEEecCCCHHHHHHHHHHHHHH-cCCCCEE
Confidence            367899998 59999999998888898 67777776543221      12222221 222333333443332 3479999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        92 v~nAg~   97 (253)
T 2nm0_A           92 IANAGV   97 (253)
T ss_dssp             EEECSC
T ss_pred             EECCCC
Confidence            998874

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=95.52  E-value=0.046  Score=45.75  Aligned_cols=80  Identities=15%  Similarity=0.195  Sum_probs=49.1

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCC---CEeeccCC-CCcchhHHHHHhhhhcCCCcc
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGA---DETAKVST-DIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~---~~v~~~~~-~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +++||+| +|++|.++++.+...|+ .|+.+++++++.+.+. ++..   ...+..+- +.++....+.++.+. -+.+|
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g~iD   99 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEE-FATLR   99 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGG-GSSCC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-hCCCC
Confidence            6889998 59999999998888898 6888888877655443 3321   11121121 122222233333222 24689


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      ++|++.|.
T Consensus       100 ~lvnnAG~  107 (272)
T 2nwq_A          100 GLINNAGL  107 (272)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999874

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.51  E-value=0.056  Score=44.97  Aligned_cols=76  Identities=17%  Similarity=0.221  Sum_probs=47.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .++++||+| +|.+|..+++.+...|+ .|+++++++++     .... ..+..+ .+.++....+.++.+.. +++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~-~~~~~Dl~~~~~v~~~~~~~~~~~-g~iD~l   78 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKY-DHIECDVTNPDQVKASIDHIFKEY-GSISVL   78 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSS-EEEECCTTCHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCce-EEEEecCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            367899998 59999999998888898 67777776544     1111 122112 12223333344443322 479999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      |++.|.
T Consensus        79 v~~Ag~   84 (264)
T 2dtx_A           79 VNNAGI   84 (264)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999884

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.50  E-value=0.048  Score=44.12  Aligned_cols=99  Identities=22%  Similarity=0.354  Sum_probs=64.6

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHhhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ...++++++||-.|+|..|..++.+++..+. .|++++.+++..+.+++    .+.. .++.  .+...    ...+   
T Consensus        50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~--~d~~~----~~~~---  119 (230)
T 3evz_A           50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVK--SNGGI----IKGV---  119 (230)
T ss_dssp             HTTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEE--CSSCS----STTT---
T ss_pred             HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEe--CCchh----hhhc---
Confidence            3457889999999988448888888887655 89999999988777764    3331 1111  11000    0111   


Q ss_pred             cCCCccEEEEccC---------------------C----hHHHHHHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSFDCVG---------------------F----DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~d~~g---------------------~----~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ....+|+|+-...                     +    ...+..+.+.|+++|+++.+
T Consensus       120 ~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          120 VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            1357999985411                     0    23567777889999998875

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=95.49  E-value=0.051  Score=44.27  Aligned_cols=105  Identities=19%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhc-
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAM-  206 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~-  206 (319)
                      +..++.+||-+|+| .|..++.+++..+ -.++++++.+++..+.+++    .|....+.+.  ..+..+.+..+.... 
T Consensus        69 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~--~~d~~~~l~~l~~~~~  145 (232)
T 3cbg_A           69 SLTGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLR--LGPALATLEQLTQGKP  145 (232)
T ss_dssp             HHHTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE--ESCHHHHHHHHHTSSS
T ss_pred             HhcCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE--EcCHHHHHHHHHhcCC
Confidence            34567899999988 4889999999864 2389999999988777765    2432211111  123333333332111 


Q ss_pred             CCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...+|+||-....   ...+..+.+.|+++|.++.-.
T Consensus       146 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          146 LPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             CCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            1579999843322   245788889999999998753

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=95.48  E-value=0.11  Score=44.65  Aligned_cols=81  Identities=22%  Similarity=0.316  Sum_probs=49.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC---------ChhHHH-H---HHHcCCCEeeccCCCCcchhHHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV---------DVQRLS-I---ARNLGADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~---------~~~~~~-~---~~~~g~~~v~~~~~~~~~~~~~i~~  201 (319)
                      .++++||+| +|++|..+++.+...|+ +|++.++         +.++.+ .   +++.+.....++. +..+....+.+
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~-~~~~~~~~~~~   85 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYD-SVEAGEKLVKT   85 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECC-CGGGHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCC-CHHHHHHHHHH
Confidence            467889998 59999999998888898 6666533         333332 2   2233433333432 22333344444


Q ss_pred             hhhhcCCCccEEEEccCC
Q 020928          202 IQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~  219 (319)
                      +.+. .+++|++|++.|.
T Consensus        86 ~~~~-~g~iD~lVnnAG~  102 (319)
T 1gz6_A           86 ALDT-FGRIDVVVNNAGI  102 (319)
T ss_dssp             HHHH-TSCCCEEEECCCC
T ss_pred             HHHH-cCCCCEEEECCCC
Confidence            4433 3479999999883

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.47  E-value=0.053  Score=45.07  Aligned_cols=98  Identities=13%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCE-eeccCCCCcchhHHHHHhhhhcC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADE-TAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~-v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++.+||-+|+|. |..++.+++..+. .|++++.++...+.+++    .+... +.....   ++    .++. ...
T Consensus        43 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~----~~~~-~~~  112 (267)
T 3kkz_A           43 NLTEKSLIADIGCGT-GGQTMVLAGHVTG-QVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVG---SM----DDLP-FRN  112 (267)
T ss_dssp             CCCTTCEEEEETCTT-CHHHHHHHTTCSS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC---CT----TSCC-CCT
T ss_pred             cCCCCCEEEEeCCCC-CHHHHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEc---Ch----hhCC-CCC
Confidence            478999999999886 8888889888444 89999999987777665    33221 111111   11    0111 013


Q ss_pred             CCccEEEEccC-----ChHHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSFDCVG-----FDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~d~~g-----~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+|+|+....     -...+..+.+.|+|+|+++...
T Consensus       113 ~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          113 EELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             TCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEE
Confidence            57999985322     2346778888999999998765

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=95.46  E-value=0.067  Score=43.91  Aligned_cols=82  Identities=16%  Similarity=0.290  Sum_probs=48.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-ChhHHHHH----HHcCCCEe-eccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA----RNLGADET-AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-~~~~~~~~----~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      .++++||+| +|.+|.++++.+...|+ +|+++++ ++++.+.+    ++.+.... +..+ .+.++....+.++.+.. 
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-   80 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF-   80 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-
Confidence            357899998 69999999998888899 5655544 44443332    23343221 2112 12223333444444333 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus        81 g~id~lv~nAg~   92 (246)
T 3osu_A           81 GSLDVLVNNAGI   92 (246)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999885

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.46  E-value=0.065  Score=46.60  Aligned_cols=92  Identities=18%  Similarity=0.289  Sum_probs=62.5

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++.++ +..+++|+..+.       +    +.++.    ...|+|+-
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~~-------~----l~ell----~~aDvV~l  229 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSD-GVERALGLQRVS-------T----LQDLL----FHSDCVTL  229 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCT-THHHHHTCEECS-------S----HHHHH----HHCSEEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhHhhcCCeecC-------C----HHHHH----hcCCEEEE
Confidence            46789999999999999999999999 78888776543 233456653210       1    11222    24789888


Q ss_pred             ccCChH----HH-HHHHHhhcCCCEEEEecccCC
Q 020928          216 CVGFDK----TM-STALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       216 ~~g~~~----~~-~~~~~~l~~~G~~v~~g~~~~  244 (319)
                      ++....    .+ ...+..|+++..++.++....
T Consensus       230 ~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~  263 (347)
T 1mx3_A          230 HCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL  263 (347)
T ss_dssp             CCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTS
T ss_pred             cCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChH
Confidence            776421    12 456778899998998876543

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=95.44  E-value=0.068  Score=43.60  Aligned_cols=80  Identities=18%  Similarity=0.228  Sum_probs=48.0

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHHHH----HcCCCE-e-eccCC-CCcchhHHHHHhhhhcCC
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIAR----NLGADE-T-AKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~~~----~~g~~~-v-~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      +++||+| +|.+|..+++.+...|+ .|+++ ++++++.+.+.    +.+... . +..+- +.++....+.++.+.. +
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVL-G   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHH-T
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhc-C
Confidence            5789998 69999999998888898 56666 77766554332    223221 1 22221 2222333333333322 4


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ++|++|++.|.
T Consensus        80 ~~d~li~~Ag~   90 (245)
T 2ph3_A           80 GLDTLVNNAGI   90 (245)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=95.44  E-value=0.057  Score=48.02  Aligned_cols=88  Identities=18%  Similarity=0.187  Sum_probs=53.8

Q ss_pred             hcCC-CCCCeEEEEC-CCHHHHHHHHHHHH-cCCCeEEEecCChhH----------------HHHHHHcCCCEe-eccC-
Q 020928          131 RANV-GPETNVMIMG-SGPIGLVTLLAARA-FGAPRIIITDVDVQR----------------LSIARNLGADET-AKVS-  189 (319)
Q Consensus       131 ~~~~-~~~~~vlI~G-~g~vG~~ai~la~~-~g~~~vv~v~~~~~~----------------~~~~~~~g~~~v-~~~~-  189 (319)
                      ...+ +.++++||+| ++++|.++...+.. .|+ .|+.++++++.                .+.+++.|.... +..+ 
T Consensus        54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dv  132 (422)
T 3s8m_A           54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDA  132 (422)
T ss_dssp             TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             ccccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecC
Confidence            3556 4577888998 58999988887666 899 67766554321                134555664322 2222 


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCC
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      .+.++....+..+.+..++++|+++++.|.
T Consensus       133 td~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          133 FSDAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             TSHHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            223333444445544442589999999875

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.44  E-value=0.079  Score=45.94  Aligned_cols=78  Identities=15%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHH-cCCCE--eeccCCCCcchhHHHHHhhhhcCCC
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARN-LGADE--TAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~-~g~~~--v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      -.+.+|||+| +|.+|..+++.+... |...|+++++++.+.+.+.+ +....  .+..+-.  + .+.+.++.    .+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~--d-~~~l~~~~----~~   91 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVR--D-LERLNYAL----EG   91 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTT--C-HHHHHHHT----TT
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCC--C-HHHHHHHH----hc
Confidence            3568999998 699999999877777 87578888888876654433 32111  1111111  2 12333332    36


Q ss_pred             ccEEEEccCC
Q 020928          210 IDVSFDCVGF  219 (319)
Q Consensus       210 ~d~v~d~~g~  219 (319)
                      +|+||.+++.
T Consensus        92 ~D~Vih~Aa~  101 (344)
T 2gn4_A           92 VDICIHAAAL  101 (344)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.43  E-value=0.2  Score=43.27  Aligned_cols=76  Identities=18%  Similarity=0.132  Sum_probs=46.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh----hHHHHHHHc------CCCEeeccCCCCcchhHHHHHhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV----QRLSIARNL------GADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~----~~~~~~~~~------g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      .+.+|||+| +|.+|..+++.+...|. .|+++++..    ...+.++..      .-...+..+-.  + .+.+.++. 
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d-~~~~~~~~-   98 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIR--D-LTTCEQVM-   98 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTT--C-HHHHHHHT-
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCC--C-HHHHHHHh-
Confidence            357999998 59999999998888898 677777643    333333332      21122222211  2 12333332 


Q ss_pred             hcCCCccEEEEccCC
Q 020928          205 AMGSGIDVSFDCVGF  219 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~  219 (319)
                         .++|+||.+.+.
T Consensus        99 ---~~~d~Vih~A~~  110 (351)
T 3ruf_A           99 ---KGVDHVLHQAAL  110 (351)
T ss_dssp             ---TTCSEEEECCCC
T ss_pred             ---cCCCEEEECCcc
Confidence               379999999984

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=95.39  E-value=0.07  Score=44.36  Aligned_cols=82  Identities=16%  Similarity=0.216  Sum_probs=49.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC-ChhHHHHH----HHcCCCE-eeccCCC-CcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIA----RNLGADE-TAKVSTD-IEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~-~~~~~~~~----~~~g~~~-v~~~~~~-~~~~~~~i~~~~~~~~  207 (319)
                      .+.++||+| +|.+|..+++.+...|+ .|+++++ ++++.+.+    ++.+... .+..+-. .+++...+.++.+.. 
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   97 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF-   97 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Confidence            467899998 69999999998888898 6777766 65554322    2234332 1222211 223333333333322 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|++|++.|.
T Consensus        98 ~~~d~vi~~Ag~  109 (274)
T 1ja9_A           98 GGLDFVMSNSGM  109 (274)
T ss_dssp             SCEEEEECCCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999998874

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=95.38  E-value=0.3  Score=42.29  Aligned_cols=132  Identities=14%  Similarity=0.175  Sum_probs=78.7

Q ss_pred             CeEEEECCCHHHHH-HHHHHHH-cCCCeEEEecCChhHH-HHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          138 TNVMIMGSGPIGLV-TLLAARA-FGAPRIIITDVDVQRL-SIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       138 ~~vlI~G~g~vG~~-ai~la~~-~g~~~vv~v~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      =++.|+|+|.+|.. .+...+. -++..+.+.++++++. ++++++|...+..      ++    +++..  ...+|+|+
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~------d~----~ell~--~~~iDaV~   91 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFG------SY----EEMLA--SDVIDAVY   91 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEES------SH----HHHHH--CSSCSEEE
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeC------CH----HHHhc--CCCCCEEE
Confidence            37899999999964 3454444 4664444557777654 4566788765432      22    23332  45799999


Q ss_pred             EccCChHHHHHHHHhhcCCCEEEEecccCCcccccchH----HHhcCcEEE-Ee-eccCCCHHHHHHHHHcCCC
Q 020928          215 DCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTP----AAAREVDVI-GI-FRYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~----~~~~~~~i~-~~-~~~~~~~~~~~~~~~~g~~  282 (319)
                      -|+......+.+..+|..+ +=+++.-+.-...-....    .-.+++.+. ++ .++...++.+.+++++|.+
T Consensus        92 I~tP~~~H~~~~~~al~aG-khVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~G~i  164 (350)
T 4had_A           92 IPLPTSQHIEWSIKAADAG-KHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDEGAI  164 (350)
T ss_dssp             ECSCGGGHHHHHHHHHHTT-CEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTT
T ss_pred             EeCCCchhHHHHHHHHhcC-CEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhcCCC
Confidence            9999877778888888765 445564322111111111    122333332 22 2335567888889999887

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=95.38  E-value=0.059  Score=45.13  Aligned_cols=105  Identities=14%  Similarity=0.186  Sum_probs=65.0

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ..+++++++||=.|+|+ |..++++++.. +...|++++.++++.+.+++    .|...+....   .|.......+.. 
T Consensus        78 ~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~---~D~~~~~~~~~~-  152 (274)
T 3ajd_A           78 VLNPREDDFILDMCAAP-GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIIN---ADMRKYKDYLLK-  152 (274)
T ss_dssp             HHCCCTTCEEEETTCTT-CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---SCHHHHHHHHHH-
T ss_pred             HhCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEe---CChHhcchhhhh-
Confidence            35678999998888765 66677777765 43489999999998877655    4543322211   122221111100 


Q ss_pred             cCCCccEEEE---ccCC---------------------hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFD---CVGF---------------------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d---~~g~---------------------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|.|+-   |.|.                     ...+..+.+.|+++|+++...
T Consensus       153 ~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          153 NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            1356999864   2221                     245777888999999988643

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.36  E-value=0.11  Score=42.21  Aligned_cols=97  Identities=14%  Similarity=0.240  Sum_probs=64.6

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      ++++.+||-+|+|. |..+..+++. |. .+++++.++...+.+++.....-+.+..  .+..    .+. .....+|+|
T Consensus        51 ~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~d~~----~~~-~~~~~fD~v  120 (242)
T 3l8d_A           51 VKKEAEVLDVGCGD-GYGTYKLSRT-GY-KAVGVDISEVMIQKGKERGEGPDLSFIK--GDLS----SLP-FENEQFEAI  120 (242)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHTTTCBTTEEEEE--CBTT----BCS-SCTTCEEEE
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHHc-CC-eEEEEECCHHHHHHHHhhcccCCceEEE--cchh----cCC-CCCCCccEE
Confidence            56889999999876 7777778776 76 8999999999999888753111011100  0110    011 124579999


Q ss_pred             EEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          214 FDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       214 ~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +....-      ...+..+.+.|+++|+++...
T Consensus       121 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          121 MAINSLEWTEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             EEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcChHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence            864322      146788999999999988765

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.35  E-value=0.05  Score=43.87  Aligned_cols=94  Identities=16%  Similarity=0.246  Sum_probs=56.8

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      .+|||+| +|.+|..+++.+...|. .|+++++++++.+.+.  .....+..+-  .+ .+.+.++.    .++|+||.+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~~Dl--~d-~~~~~~~~----~~~d~vi~~   74 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN--EHLKVKKADV--SS-LDEVCEVC----KGADAVISA   74 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC--TTEEEECCCT--TC-HHHHHHHH----TTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc--CceEEEEecC--CC-HHHHHHHh----cCCCEEEEe
Confidence            5899998 59999999999988897 7888888876543211  1111111111  12 12333332    268999999


Q ss_pred             cCCh-----------HHHHHHHHhhcCC--CEEEEecc
Q 020928          217 VGFD-----------KTMSTALNATRPG--GKVCLIGL  241 (319)
Q Consensus       217 ~g~~-----------~~~~~~~~~l~~~--G~~v~~g~  241 (319)
                      +|..           .....+++.+...  ++++.++.
T Consensus        75 a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss  112 (227)
T 3dhn_A           75 FNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG  112 (227)
T ss_dssp             CCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             CcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            8863           1233344444433  48888774

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=95.34  E-value=0.11  Score=42.64  Aligned_cols=98  Identities=15%  Similarity=0.192  Sum_probs=65.3

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC-CEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA-DETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      ....++.+||-+|+|. |..+..+++. |...+++++.+++..+.+++... ..+.....   +.    ..+. .....+
T Consensus        40 ~~~~~~~~vLD~GcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---d~----~~~~-~~~~~f  109 (253)
T 3g5l_A           40 LPDFNQKTVLDLGCGF-GWHCIYAAEH-GAKKVLGIDLSERMLTEAKRKTTSPVVCYEQK---AI----EDIA-IEPDAY  109 (253)
T ss_dssp             CCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHCCCTTEEEEEC---CG----GGCC-CCTTCE
T ss_pred             hhccCCCEEEEECCCC-CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhhccCCeEEEEc---ch----hhCC-CCCCCe
Confidence            4556889999999877 7778788776 55589999999999888887432 11111111   11    1111 124579


Q ss_pred             cEEEEccCC------hHHHHHHHHhhcCCCEEEEe
Q 020928          211 DVSFDCVGF------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       211 d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      |+|+....-      ...+..+.+.|+++|+++..
T Consensus       110 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          110 NVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            999865421      24678888999999998875

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.069  Score=44.11  Aligned_cols=81  Identities=14%  Similarity=0.064  Sum_probs=49.5

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcC--CCeEEEecCChhHHHHHHH-cCCCE-eeccC-CCCcchhHHHHHhhhhcCCCc
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFG--APRIIITDVDVQRLSIARN-LGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g--~~~vv~v~~~~~~~~~~~~-~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      ++++||+| ++++|.++++.+...|  . .|+.+++++++.+.+.+ ++... .+..+ .+.++....+.++.+.. +++
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~i   79 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGH-GKI   79 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHH-SCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhc-CCc
Confidence            56889998 6999998887655554  5 67778888877655443 44222 12112 22223333344443333 479


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |+++++.|.
T Consensus        80 d~lvnnAg~   88 (254)
T 3kzv_A           80 DSLVANAGV   88 (254)
T ss_dssp             CEEEEECCC
T ss_pred             cEEEECCcc
Confidence            999999885

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=95.31  E-value=0.11  Score=45.33  Aligned_cols=131  Identities=11%  Similarity=0.062  Sum_probs=78.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHH-HHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          138 TNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSI-ARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      -+|.|+|+|.+|...+..++.. ++..+.+.++++++.+. ++++|...   +    .++.    ++..  ...+|+|+.
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~---~----~~~~----~~l~--~~~~D~V~i   72 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAG---D----ATME----ALLA--REDVEMVII   72 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCC---C----SSHH----HHHH--CSSCCEEEE
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCC---c----CCHH----HHhc--CCCCCEEEE
Confidence            4789999999998877766655 66444466777776554 45566532   2    1222    2322  357999999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEecccCCcccccch----HHHhcCcEEE-Ee-eccCCCHHHHHHHHHcCCC
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALT----PAAAREVDVI-GI-FRYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~----~~~~~~~~i~-~~-~~~~~~~~~~~~~~~~g~~  282 (319)
                      |+....+...+..++..+-. +.+.-+.....-...    ..-.+++.+. ++ ..+...++.+.+++++|.+
T Consensus        73 ~tp~~~h~~~~~~al~~gk~-vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~~g~i  144 (354)
T 3db2_A           73 TVPNDKHAEVIEQCARSGKH-IYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDTKEI  144 (354)
T ss_dssp             CSCTTSHHHHHHHHHHTTCE-EEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHHTTTT
T ss_pred             eCChHHHHHHHHHHHHcCCE-EEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHhcCCC
Confidence            99987777777788877654 444322111110111    1122333332 22 2335567888899999887

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.29  E-value=0.14  Score=44.32  Aligned_cols=92  Identities=17%  Similarity=0.164  Sum_probs=59.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      -.+|.|+|.|.+|......++..|. .|++.++++++.+.++++|.....       +..+.+...    ..+.|+||-+
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~~~-------~~~e~~~~a----~~~aDlVila   75 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDVSA-------DLEATLQRA----AAEDALIVLA   75 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCEES-------CHHHHHHHH----HHTTCEEEEC
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeeeC-------CHHHHHHhc----ccCCCEEEEe
Confidence            3579999999999999998888997 689999999998888888863211       212222111    1246788877


Q ss_pred             cCChHHHHHHHH---hhcCCCEEEEecc
Q 020928          217 VGFDKTMSTALN---ATRPGGKVCLIGL  241 (319)
Q Consensus       217 ~g~~~~~~~~~~---~l~~~G~~v~~g~  241 (319)
                      +... .....++   .++++..++.++.
T Consensus        76 vP~~-~~~~vl~~l~~~~~~~iv~Dv~S  102 (341)
T 3ktd_A           76 VPMT-AIDSLLDAVHTHAPNNGFTDVVS  102 (341)
T ss_dssp             SCHH-HHHHHHHHHHHHCTTCCEEECCS
T ss_pred             CCHH-HHHHHHHHHHccCCCCEEEEcCC
Confidence            7743 2222222   1245555555543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.28  E-value=0.19  Score=40.17  Aligned_cols=96  Identities=20%  Similarity=0.180  Sum_probs=63.2

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      ..+++.+||-+|+|. |..+..+++. +. .+++++.+++..+.+++.-...+.....   +..    .+..  ...+|+
T Consensus        42 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~---d~~----~~~~--~~~fD~  109 (220)
T 3hnr_A           42 VNKSFGNVLEFGVGT-GNLTNKLLLA-GR-TVYGIEPSREMRMIAKEKLPKEFSITEG---DFL----SFEV--PTSIDT  109 (220)
T ss_dssp             HHTCCSEEEEECCTT-SHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHSCTTCCEESC---CSS----SCCC--CSCCSE
T ss_pred             hccCCCeEEEeCCCC-CHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHhCCCceEEEeC---Chh----hcCC--CCCeEE
Confidence            345888999999876 7777777776 66 8999999999888887743211100111   110    1111  257999


Q ss_pred             EEEccCC-----h---HHHHHHHHhhcCCCEEEEec
Q 020928          213 SFDCVGF-----D---KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       213 v~d~~g~-----~---~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |+....-     +   ..+..+.+.|+++|.++...
T Consensus       110 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            9865321     1   16788889999999998764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.27  E-value=0.068  Score=45.88  Aligned_cols=83  Identities=24%  Similarity=0.372  Sum_probs=49.4

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC----------hhHH-HHH---HHcCCCEee-ccC-CCCcchhH
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD----------VQRL-SIA---RNLGADETA-KVS-TDIEDVDT  197 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~----------~~~~-~~~---~~~g~~~v~-~~~-~~~~~~~~  197 (319)
                      -.++++||+| ++++|.+++..+...|+ .|++++++          .++. +..   ++.+..... ..+ .+.++...
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  103 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAG  103 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence            3578899998 69999999998888898 67777665          2222 222   333432211 111 12223333


Q ss_pred             HHHHhhhhcCCCccEEEEccCC
Q 020928          198 DVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       198 ~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      .+.++.+.. +++|++|++.|.
T Consensus       104 ~~~~~~~~~-g~iD~lv~nAg~  124 (322)
T 3qlj_A          104 LIQTAVETF-GGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHH-SCCCEEECCCCC
T ss_pred             HHHHHHHHc-CCCCEEEECCCC
Confidence            344443333 479999999985

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.26  E-value=0.019  Score=50.30  Aligned_cols=104  Identities=14%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             HHHHHhcCCC-CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh----h--------HHHHHHHcCCCEeeccCCCC
Q 020928          126 VHACRRANVG-PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV----Q--------RLSIARNLGADETAKVSTDI  192 (319)
Q Consensus       126 ~~~l~~~~~~-~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~----~--------~~~~~~~~g~~~v~~~~~~~  192 (319)
                      +.+++..+.+ ++.+|+|.|+|..|..+.+++..+|++.|+++|+.-    .        +.++++...     .+ ...
T Consensus       176 l~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~-----~~-~~~  249 (398)
T 2a9f_A          176 FNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN-----RE-FKS  249 (398)
T ss_dssp             HHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHS-----CT-TCC
T ss_pred             HHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccC-----cc-cch
Confidence            4445543333 457899999999999999999999998899988752    1        111222110     00 011


Q ss_pred             cchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          193 EDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       193 ~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      .+..+.+        .+.|++|-+.+.....+++++.|+++-.++.+..+.
T Consensus       250 ~~L~eav--------~~ADV~IG~Sapgl~T~EmVk~Ma~~pIIfalsNPt  292 (398)
T 2a9f_A          250 GTLEDAL--------EGADIFIGVSAPGVLKAEWISKMAARPVIFAMANPI  292 (398)
T ss_dssp             CSCSHHH--------HTTCSEEECCSTTCCCHHHHHTSCSSCEEEECCSSS
T ss_pred             hhHHHHh--------ccCCEEEecCCCCCCCHHHHHhhCCCCEEEECCCCC
Confidence            1222222        146999988774435677889999888777776654

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.26  E-value=0.16  Score=43.95  Aligned_cols=131  Identities=17%  Similarity=0.146  Sum_probs=76.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHH-HHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          138 TNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSI-ARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      -+|.|+|+|.+|...+..++.. ++..+.+.++++++.+. ++++|. ..  +.    +    +.++..  ...+|+|+.
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~-~~--~~----~----~~~~l~--~~~~D~V~i   71 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGA-EA--VA----S----PDEVFA--RDDIDGIVI   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTC-EE--ES----S----HHHHTT--CSCCCEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC-ce--eC----C----HHHHhc--CCCCCEEEE
Confidence            3688999999998877766655 66434466777777554 455663 22  11    2    222321  347999999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEecccCCcccccch----HHHhcCcEEE-Ee-eccCCCHHHHHHHHHcCCC
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALT----PAAAREVDVI-GI-FRYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~----~~~~~~~~i~-~~-~~~~~~~~~~~~~~~~g~~  282 (319)
                      |+........+..++..+-.+ .+.-+.....-...    ..-.+++.+. ++ ..+...+..+.+++++|.+
T Consensus        72 ~tp~~~h~~~~~~al~~gk~v-~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~i  143 (344)
T 3euw_A           72 GSPTSTHVDLITRAVERGIPA-LCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVANQEI  143 (344)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCE-EECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHTTTT
T ss_pred             eCCchhhHHHHHHHHHcCCcE-EEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhcCCC
Confidence            999887777788888776544 44322111110111    1112233222 22 2235567888899999887

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.26  E-value=0.14  Score=44.44  Aligned_cols=89  Identities=18%  Similarity=0.171  Sum_probs=61.4

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      |.+|.|+|.|.+|..+++.++.+|. +|++.++++...+...  +...+       .+    +.++.    ...|+|+-+
T Consensus       173 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~--g~~~~-------~~----l~ell----~~sDvV~l~  234 (345)
T 4g2n_A          173 GRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE--GAIYH-------DT----LDSLL----GASDIFLIA  234 (345)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHT--TCEEC-------SS----HHHHH----HTCSEEEEC
T ss_pred             CCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchhhhc--CCeEe-------CC----HHHHH----hhCCEEEEe
Confidence            6789999999999999999999999 7888888764433322  43221       11    22222    247899888


Q ss_pred             cCCh-H---H-HHHHHHhhcCCCEEEEecccC
Q 020928          217 VGFD-K---T-MSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       217 ~g~~-~---~-~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +... +   . -...+..|+++..++.++...
T Consensus       235 ~Plt~~T~~li~~~~l~~mk~gailIN~aRG~  266 (345)
T 4g2n_A          235 APGRPELKGFLDHDRIAKIPEGAVVINISRGD  266 (345)
T ss_dssp             SCCCGGGTTCBCHHHHHHSCTTEEEEECSCGG
T ss_pred             cCCCHHHHHHhCHHHHhhCCCCcEEEECCCCc
Confidence            7742 1   1 246778899999999887543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.25  E-value=0.22  Score=38.66  Aligned_cols=94  Identities=14%  Similarity=0.152  Sum_probs=62.8

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-EeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      ++++.+||-+|+|. |..+..+++. +. .+++++.++...+.+++.... ..+..     +...    +. .....+|+
T Consensus        44 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~-----d~~~----~~-~~~~~~D~  110 (195)
T 3cgg_A           44 APRGAKILDAGCGQ-GRIGGYLSKQ-GH-DVLGTDLDPILIDYAKQDFPEARWVVG-----DLSV----DQ-ISETDFDL  110 (195)
T ss_dssp             SCTTCEEEEETCTT-THHHHHHHHT-TC-EEEEEESCHHHHHHHHHHCTTSEEEEC-----CTTT----SC-CCCCCEEE
T ss_pred             ccCCCeEEEECCCC-CHHHHHHHHC-CC-cEEEEcCCHHHHHHHHHhCCCCcEEEc-----cccc----CC-CCCCceeE
Confidence            67889999999875 7777777776 66 899999999988888774322 22111     1110    00 01357999


Q ss_pred             EEEccCC---------hHHHHHHHHhhcCCCEEEEec
Q 020928          213 SFDCVGF---------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       213 v~d~~g~---------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |+..-..         ...+..+.+.|+++|+++...
T Consensus       111 i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          111 IVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            9864111         235677888999999988653

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.24  E-value=0.1  Score=43.09  Aligned_cols=82  Identities=16%  Similarity=0.248  Sum_probs=48.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH-HHHHHH----cCCCE-eeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARN----LGADE-TAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~-~~~~~~----~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      .+.++||+| +|.+|..++..+...|+ .|+.++++.++ .+.+++    .+... .+..+- +.+++...+.++.+. -
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~   90 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD-L   90 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHh-c
Confidence            356899998 69999999998888898 67777774332 222222    24222 121121 222333333433332 2


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +.+|++|++.|.
T Consensus        91 ~~id~li~~Ag~  102 (265)
T 1h5q_A           91 GPISGLIANAGV  102 (265)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            469999999874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.23  E-value=0.071  Score=46.03  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=60.9

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+.+|.|+|.|.+|...++.++..|. .|++.+++.++.+.+.++|....        +..    ++.    ...|+|+.
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~--------~l~----e~l----~~aDvVi~  216 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQAEFV--------STP----ELA----AQSDFIVV  216 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTCEEC--------CHH----HHH----HHCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCceeC--------CHH----HHH----hhCCEEEE
Confidence            36789999999999999999999998 58888877655555555553221        111    111    24688888


Q ss_pred             ccCChH----HH-HHHHHhhcCCCEEEEeccc
Q 020928          216 CVGFDK----TM-STALNATRPGGKVCLIGLA  242 (319)
Q Consensus       216 ~~g~~~----~~-~~~~~~l~~~G~~v~~g~~  242 (319)
                      ++....    .+ ...++.++++..++.++..
T Consensus       217 ~vp~~~~t~~~i~~~~~~~mk~gailIn~srg  248 (330)
T 2gcg_A          217 ACSLTPATEGLCNKDFFQKMKETAVFINISRG  248 (330)
T ss_dssp             CCCCCTTTTTCBSHHHHHHSCTTCEEEECSCG
T ss_pred             eCCCChHHHHhhCHHHHhcCCCCcEEEECCCC
Confidence            886531    12 3456788888888777643

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=95.22  E-value=0.11  Score=41.20  Aligned_cols=100  Identities=20%  Similarity=0.239  Sum_probs=65.3

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCC-EeeccCCCCcchhHHHHHhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GAD-ETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      +....+++ +||-+|+|. |..+..+++..+. .+++++.+++..+.+++.    +.. .+.....   +..    .+. 
T Consensus        38 ~~~~~~~~-~vLdiG~G~-G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~---d~~----~~~-  106 (219)
T 3dlc_A           38 NRFGITAG-TCIDIGSGP-GALSIALAKQSDF-SIRALDFSKHMNEIALKNIADANLNDRIQIVQG---DVH----NIP-  106 (219)
T ss_dssp             HHHCCCEE-EEEEETCTT-SHHHHHHHHHSEE-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC---BTT----BCS-
T ss_pred             HhcCCCCC-EEEEECCCC-CHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHhccccCceEEEEc---CHH----HCC-
Confidence            44566666 888899876 7788888888665 799999999887777653    321 1111111   110    010 


Q ss_pred             hcCCCccEEEEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .....+|+|+....-      ...+..+.+.|+++|+++...
T Consensus       107 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          107 IEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            023579999865321      246788899999999988764

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=95.21  E-value=0.17  Score=44.02  Aligned_cols=131  Identities=13%  Similarity=0.098  Sum_probs=77.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCCeEEEecCChhHHH-HHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          138 TNVMIMGSGPIGLVTLLAARAF--GAPRIIITDVDVQRLS-IARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~--g~~~vv~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      -+|.|+|+|.+|...+..++..  ++..+.+.++++++.+ +.+++|. ..  +.    ++.+    +.+  ...+|+|+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~-~~--~~----~~~~----ll~--~~~~D~V~   80 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGA-RG--HA----SLTD----MLA--QTDADIVI   80 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCC-EE--ES----CHHH----HHH--HCCCSEEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCC-ce--eC----CHHH----Hhc--CCCCCEEE
Confidence            4789999999998777766655  6644556677777755 4455775 22  11    2222    222  24799999


Q ss_pred             EccCChHHHHHHHHhhcCCCEEEEecccCCcccccc----hHHHhcCcEEE-Eee-ccCCCHHHHHHHHHcCCC
Q 020928          215 DCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVAL----TPAAAREVDVI-GIF-RYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~----~~~~~~~~~i~-~~~-~~~~~~~~~~~~~~~g~~  282 (319)
                      .|+........+..++..+-. +.+.-+.....-..    ...-.+++.+. ++. .+...++.+.+++++|.+
T Consensus        81 i~tp~~~h~~~~~~al~~gk~-v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~i  153 (354)
T 3q2i_A           81 LTTPSGLHPTQSIECSEAGFH-VMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQEKRF  153 (354)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCE-EEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTT
T ss_pred             ECCCcHHHHHHHHHHHHCCCC-EEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHhcCCC
Confidence            999987677777778877644 44432211111011    11122333332 222 235567888899999887

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.20  E-value=0.099  Score=42.47  Aligned_cols=101  Identities=21%  Similarity=0.308  Sum_probs=66.1

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .....++.+||-+|+|. |..+..+++. |...+++++.+++..+.+++.....-+.+..  .+..    .+. .....+
T Consensus        38 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~d~~----~~~-~~~~~f  108 (243)
T 3bkw_A           38 MLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYER--ADLD----KLH-LPQDSF  108 (243)
T ss_dssp             HSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEE--CCGG----GCC-CCTTCE
T ss_pred             hccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEE--cChh----hcc-CCCCCc
Confidence            35567889999999876 7777777776 6558999999999999888754321111101  1111    111 123579


Q ss_pred             cEEEEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          211 DVSFDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       211 d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |+|+....-      ...+..+.+.|+++|+++...
T Consensus       109 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          109 DLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence            999865331      246778889999999988653

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.19  E-value=0.17  Score=41.15  Aligned_cols=96  Identities=16%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .....+++|+|+|.+|..+++.+...|.  |+++++++++.+.++ .+.. ++.-+..+.   +.+.   +..-.++|.+
T Consensus         6 ~~~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~~~~~~-~~~~-~i~gd~~~~---~~l~---~a~i~~ad~v   75 (234)
T 2aef_A            6 VAKSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLR-SGAN-FVHGDPTRV---SDLE---KANVRGARAV   75 (234)
T ss_dssp             ----CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGHHHHHH-TTCE-EEESCTTCH---HHHH---HTTCTTCSEE
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHHHHHHh-cCCe-EEEcCCCCH---HHHH---hcCcchhcEE
Confidence            3456789999999999999888887786  778888888877776 5533 332222211   1222   2223578999


Q ss_pred             EEccCChHH---HHHHHHhhcCCCEEEEe
Q 020928          214 FDCVGFDKT---MSTALNATRPGGKVCLI  239 (319)
Q Consensus       214 ~d~~g~~~~---~~~~~~~l~~~G~~v~~  239 (319)
                      +-+.+.++.   .....+.+.+..+++.-
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           76 IVDLESDSETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             EEcCCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            999987532   22344556666566544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=95.18  E-value=0.19  Score=40.48  Aligned_cols=99  Identities=10%  Similarity=0.034  Sum_probs=64.1

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++.+||=+|+|. |..++.+|+...-..|++++.+++..+.+++    .+...+..+.   .|....+....  ....+|
T Consensus        34 ~~~~vLDiGcG~-G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~---~Da~~~l~~~~--~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGM-GASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMC---HDAVEVLHKMI--PDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTT-CHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEEC---SCHHHHHHHHS--CTTCEE
T ss_pred             CCCeEEEEeeeC-hHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEE---CCHHHHHHHHc--CCCChh
Confidence            567788889877 8888899988754489999999987766543    4443332221   23222222211  245688


Q ss_pred             EEEEccCCh--------------HHHHHHHHhhcCCCEEEEec
Q 020928          212 VSFDCVGFD--------------KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       212 ~v~d~~g~~--------------~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .|+-....+              ..+..+.+.|+++|.++...
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            887543322              37888899999999987653

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.18  E-value=0.075  Score=46.25  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=59.7

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAAR-AFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~-~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      -.|.+|.|+|.|.+|...++.++ ..|. +|++.++++++.+..+++|...+    .   +..    ++.    ...|+|
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~---~l~----ell----~~aDvV  224 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV----D---SLE----ELA----RRSDCV  224 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC----S---SHH----HHH----HHCSEE
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe----C---CHH----HHh----ccCCEE
Confidence            35678999999999999999999 9998 78888887766555555564321    0   111    111    136777


Q ss_pred             EEccCChH----HH-HHHHHhhcCCCEEEEecc
Q 020928          214 FDCVGFDK----TM-STALNATRPGGKVCLIGL  241 (319)
Q Consensus       214 ~d~~g~~~----~~-~~~~~~l~~~G~~v~~g~  241 (319)
                      +-++....    .+ ...+..|+++..++.++.
T Consensus       225 il~vp~~~~t~~li~~~~l~~mk~gailin~sr  257 (348)
T 2w2k_A          225 SVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR  257 (348)
T ss_dssp             EECCCCSGGGTTCBCHHHHHHSCTTEEEEECSC
T ss_pred             EEeCCCChHHHHHhhHHHHhcCCCCCEEEECCC
Confidence            77765421    11 245566777777776654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.18  E-value=0.084  Score=44.54  Aligned_cols=75  Identities=15%  Similarity=0.320  Sum_probs=48.7

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc----CCCE-eeccCCCCcchhHHHHHhhhhcC
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL----GADE-TAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~----g~~~-v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      -+++++||+| +|++|.+++..+...|+ .|+++++++++.+.+ +++    +... ..+..    + .+.+.++.    
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~----~-~~~~~~~~----  186 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETA----D-DASRAEAV----  186 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECC----S-HHHHHHHT----
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCC----C-HHHHHHHH----
Confidence            3678999998 79999999998888998 588888887665533 333    2111 11211    1 12233332    


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      ..+|+++++.|.
T Consensus       187 ~~~DvlVn~ag~  198 (287)
T 1lu9_A          187 KGAHFVFTAGAI  198 (287)
T ss_dssp             TTCSEEEECCCT
T ss_pred             HhCCEEEECCCc
Confidence            248999999973

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.16  E-value=0.11  Score=47.01  Aligned_cols=95  Identities=13%  Similarity=0.153  Sum_probs=56.8

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      +.+|+|+|+|.+|..+++.+...|. .|+++++++++.+.+.+ ++....+..+-.  +. +.+.++.    .++|+|++
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~--d~-~~l~~~l----~~~DvVIn   74 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVN--DD-AALDAEV----AKHDLVIS   74 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTT--CH-HHHHHHH----TTSSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecC--CH-HHHHHHH----cCCcEEEE
Confidence            5689999999999999988888897 68888888776554332 331112111111  11 2233332    26999999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEe
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +++..........++.++..++..
T Consensus        75 ~a~~~~~~~i~~a~l~~g~~vvd~   98 (450)
T 1ff9_A           75 LIPYTFHATVIKSAIRQKKHVVTT   98 (450)
T ss_dssp             CCC--CHHHHHHHHHHHTCEEEES
T ss_pred             CCccccchHHHHHHHhCCCeEEEe
Confidence            998532223344556666566544

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=95.16  E-value=0.1  Score=45.02  Aligned_cols=132  Identities=15%  Similarity=0.046  Sum_probs=77.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHH-HHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          138 TNVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLS-IARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      -+|.|+|+|.+|...+..++.. ++..+.+.++++++.+ +++++|...+.      .++    .++..  ...+|+|+.
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~------~~~----~~ll~--~~~~D~V~i   73 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAY------GSY----EELCK--DETIDIIYI   73 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCB------SSH----HHHHH--CTTCSEEEE
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCcee------CCH----HHHhc--CCCCCEEEE
Confidence            3688899999998777766664 6633445577766644 45556653221      122    22322  357999999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEecccCCcccccc----hHHHhcCcEEEEee--ccCCCHHHHHHHHHcCCC
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVAL----TPAAAREVDVIGIF--RYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~----~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~g~~  282 (319)
                      |+........+..++..+-.+ .+.-+.....-..    ...-.+++.+.-..  .+...++.+.+++++|.+
T Consensus        74 ~tp~~~h~~~~~~al~~gk~v-l~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~i  145 (330)
T 3e9m_A           74 PTYNQGHYSAAKLALSQGKPV-LLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQEGGL  145 (330)
T ss_dssp             CCCGGGHHHHHHHHHHTTCCE-EECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHHTTTT
T ss_pred             cCCCHHHHHHHHHHHHCCCeE-EEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHhCCCC
Confidence            999887777788888776544 4432211111011    11222344333222  235567888899998887

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=95.15  E-value=0.2  Score=41.73  Aligned_cols=97  Identities=20%  Similarity=0.244  Sum_probs=65.4

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC-CEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA-DETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      .....+++.+||-+|+|. |..+..+++ .+. .|++++.++...+.+++... .....  .   +..    .+.  ...
T Consensus        51 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~--~---d~~----~~~--~~~  116 (279)
T 3ccf_A           51 QLLNPQPGEFILDLGCGT-GQLTEKIAQ-SGA-EVLGTDNAATMIEKARQNYPHLHFDV--A---DAR----NFR--VDK  116 (279)
T ss_dssp             HHHCCCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHCTTSCEEE--C---CTT----TCC--CSS
T ss_pred             HHhCCCCCCEEEEecCCC-CHHHHHHHh-CCC-eEEEEECCHHHHHHHHhhCCCCEEEE--C---Chh----hCC--cCC
Confidence            345678889999999876 777888887 666 89999999998888876421 11111  1   111    111  135


Q ss_pred             CccEEEEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          209 GIDVSFDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       209 ~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+|+|+....-      ...+..+.+.|+++|+++...
T Consensus       117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          117 PLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEe
Confidence            79999864331      246788899999999988653

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.15  E-value=0.071  Score=43.70  Aligned_cols=92  Identities=21%  Similarity=0.236  Sum_probs=53.8

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +++||+| +|.+|..++..+...|. .|+++++++++.+      ..    +..+-.+ .+.+.++.+...+++|++|++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~~------~~----~~~D~~~-~~~~~~~~~~~~~~~d~vi~~   69 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQADIE------AD----LSTPGGR-ETAVAAVLDRCGGVLDGLVCC   69 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEE------CC----TTSHHHH-HHHHHHHHHHHTTCCSEEEEC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHcc------cc----ccCCccc-HHHHHHHHHHcCCCccEEEEC
Confidence            3689998 59999999988888898 6888877654321      00    1000001 122333322222479999998


Q ss_pred             cCChH------------------HHHHHHHhhcC--CCEEEEecc
Q 020928          217 VGFDK------------------TMSTALNATRP--GGKVCLIGL  241 (319)
Q Consensus       217 ~g~~~------------------~~~~~~~~l~~--~G~~v~~g~  241 (319)
                      .|...                  ..+.+.+.+..  .++++.++.
T Consensus        70 Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           70 AGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             CCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             CCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            87421                  12334444433  389998874

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.13  E-value=0.066  Score=46.02  Aligned_cols=89  Identities=16%  Similarity=0.068  Sum_probs=61.9

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC-ChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV-DVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++ +.++ +..+++|+..+    .   +.    .++.    ...|+|+
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~~----~---~l----~ell----~~aDvVi  207 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATFH----D---SL----DSLL----SVSQFFS  207 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEEC----S---SH----HHHH----HHCSEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEEc----C---CH----HHHH----hhCCEEE
Confidence            56789999999999999999999998 7888888 6665 34556675321    0   11    1121    2468888


Q ss_pred             EccCChH----HH-HHHHHhhcCCCEEEEecc
Q 020928          215 DCVGFDK----TM-STALNATRPGGKVCLIGL  241 (319)
Q Consensus       215 d~~g~~~----~~-~~~~~~l~~~G~~v~~g~  241 (319)
                      -++....    .+ ...+..|+++..++.++.
T Consensus       208 l~~p~~~~t~~~i~~~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          208 LNAPSTPETRYFFNKATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             ECCCCCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             EeccCchHHHhhcCHHHHhhCCCCcEEEECCC
Confidence            8877431    11 345678888888888875

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.13  E-value=0.11  Score=43.19  Aligned_cols=83  Identities=17%  Similarity=0.270  Sum_probs=48.3

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEec-CChhHHHHH-H---HcCCC-EeeccC-CCCcchhHHHHHhhhhc
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQRLSIA-R---NLGAD-ETAKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~-~~~~~~~~~-~---~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      ..++++||+| +|++|..+++.+...|+ +|+.++ +..+..+.. +   +.+.. ..+..+ .+.++....+.++.+..
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3567889998 69999999998888899 566665 444433322 2   22321 122222 12223333344443333


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                       +++|++|++.|.
T Consensus       102 -g~id~li~nAg~  113 (269)
T 3gk3_A          102 -GKVDVLINNAGI  113 (269)
T ss_dssp             -SCCSEEEECCCC
T ss_pred             -CCCCEEEECCCc
Confidence             479999999884

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.12  E-value=0.041  Score=47.50  Aligned_cols=90  Identities=17%  Similarity=0.247  Sum_probs=62.1

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.++++.+.+..+++|....        +    +.++.    ...|+|+-
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~--------~----l~ell----~~aDvV~l  206 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGLRQV--------A----CSELF----ASSDFILL  206 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTEEEC--------C----HHHHH----HHCSEEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCceeC--------C----HHHHH----hhCCEEEE
Confidence            46799999999999999999999999 78888887755555566664211        1    11121    13678877


Q ss_pred             ccCChH----H-HHHHHHhhcCCCEEEEeccc
Q 020928          216 CVGFDK----T-MSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       216 ~~g~~~----~-~~~~~~~l~~~G~~v~~g~~  242 (319)
                      ++....    . -...+..|+++..++.++..
T Consensus       207 ~~P~t~~t~~li~~~~l~~mk~gailIN~arg  238 (330)
T 4e5n_A          207 ALPLNADTLHLVNAELLALVRPGALLVNPCRG  238 (330)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTEEEEECSCG
T ss_pred             cCCCCHHHHHHhCHHHHhhCCCCcEEEECCCC
Confidence            766321    1 13566778888888887753

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=95.11  E-value=0.077  Score=43.55  Aligned_cols=102  Identities=17%  Similarity=0.183  Sum_probs=63.5

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----c--------CCCEeeccCCCCcchhHHH
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----L--------GADETAKVSTDIEDVDTDV  199 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~--------g~~~v~~~~~~~~~~~~~i  199 (319)
                      ..++++.+||=+|+|. |..++.+|+......+++++.++...+.+++    .        +...+..+..   |..+.+
T Consensus        45 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~---D~~~~l  120 (246)
T 2vdv_E           45 GQMTKKVTIADIGCGF-GGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRG---NAMKFL  120 (246)
T ss_dssp             -CBSCCEEEEEETCTT-SHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEEC---CTTSCG
T ss_pred             ccCCCCCEEEEEcCCC-CHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEec---cHHHHH
Confidence            3456778888899876 7788888887643379999999987776644    1        4322211111   111111


Q ss_pred             HHhhhhcCCCccEEEEccCCh--------------HHHHHHHHhhcCCCEEEEe
Q 020928          200 GKIQNAMGSGIDVSFDCVGFD--------------KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       200 ~~~~~~~~~~~d~v~d~~g~~--------------~~~~~~~~~l~~~G~~v~~  239 (319)
                      ....  ....+|.|+-....+              ..+..+.+.|+++|.++..
T Consensus       121 ~~~~--~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          121 PNFF--EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             GGTS--CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHhc--cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            1111  134577776444433              5788899999999998874

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.11  E-value=0.073  Score=42.86  Aligned_cols=104  Identities=16%  Similarity=0.217  Sum_probs=66.7

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCE-eeccCCCCcchhHHHHHhhhhc
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADE-TAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~-v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      +..++.+||-+|+|. |..++.+++..+ ..+|++++.+++..+.+++    .+... +...   ..+..+.+..+....
T Consensus        61 ~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~~~~~~  136 (225)
T 3tr6_A           61 KLMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLR---LSPAKDTLAELIHAG  136 (225)
T ss_dssp             HHHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE---ESCHHHHHHHHHTTT
T ss_pred             HhhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE---eCCHHHHHHHhhhcc
Confidence            345778999999876 888889998764 3489999999988777765    34332 1111   123333333222100


Q ss_pred             -CCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEec
Q 020928          207 -GSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 -~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                       ...+|+||-....   ...+..+.+.|+++|.++.-.
T Consensus       137 ~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          137 QAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence             1579999843332   235778889999999998654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.08  E-value=0.11  Score=46.27  Aligned_cols=101  Identities=12%  Similarity=0.161  Sum_probs=69.1

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCC
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      +...++++.+||-+|+|. |..+..+++ .|. .+++++.+++..+.+++.+.......-  ..+   ....+.. ....
T Consensus       101 ~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~--~~~---~~~~l~~-~~~~  171 (416)
T 4e2x_A          101 ATELTGPDPFIVEIGCND-GIMLRTIQE-AGV-RHLGFEPSSGVAAKAREKGIRVRTDFF--EKA---TADDVRR-TEGP  171 (416)
T ss_dssp             HTTTCSSSCEEEEETCTT-TTTHHHHHH-TTC-EEEEECCCHHHHHHHHTTTCCEECSCC--SHH---HHHHHHH-HHCC
T ss_pred             HHhCCCCCCEEEEecCCC-CHHHHHHHH-cCC-cEEEECCCHHHHHHHHHcCCCcceeee--chh---hHhhccc-CCCC
Confidence            446678899999999876 767777776 477 899999999999999887655433211  011   1112211 1357


Q ss_pred             ccEEEEccCC------hHHHHHHHHhhcCCCEEEEe
Q 020928          210 IDVSFDCVGF------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       210 ~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +|+|+..-.-      ...+..+.+.|+++|+++..
T Consensus       172 fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  207 (416)
T 4e2x_A          172 ANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFE  207 (416)
T ss_dssp             EEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence            9999864331      24678899999999998864

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=95.08  E-value=0.026  Score=47.03  Aligned_cols=92  Identities=11%  Similarity=-0.005  Sum_probs=61.1

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC--------EeeccCCCCcchhHHHHHhhhh
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD--------ETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~--------~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      .+.+++||++|+|. |..+..+++. + .+|++++.+++-.+.+++.-..        .+....   .|..    +.   
T Consensus        70 ~~~~~~VL~iG~G~-G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~---~D~~----~~---  136 (262)
T 2cmg_A           70 KKELKEVLIVDGFD-LELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLLD----LD---  136 (262)
T ss_dssp             SSCCCEEEEESSCC-HHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEES---SGGG----SC---
T ss_pred             CCCCCEEEEEeCCc-CHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEe---chHH----HH---
Confidence            34668999999876 7777788887 7 6999999998887777653211        010000   1110    00   


Q ss_pred             cCCCccEEEEccCChH-HHHHHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSFDCVGFDK-TMSTALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~~-~~~~~~~~l~~~G~~v~~  239 (319)
                      . ..+|+|+-....+. .++.+.+.|+++|.++..
T Consensus       137 ~-~~fD~Ii~d~~dp~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          137 I-KKYDLIFCLQEPDIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             C-CCEEEEEESSCCCHHHHHHHHTTEEEEEEEEEE
T ss_pred             H-hhCCEEEECCCChHHHHHHHHHhcCCCcEEEEE
Confidence            1 46999986554443 477889999999999875

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.07  E-value=0.11  Score=44.69  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=34.1

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  178 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~  178 (319)
                      .++.+|||+| +|.+|..++..+...|. .|++++++.++.+.+.
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~   52 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHH
Confidence            4567999998 59999999998888898 7888888877655443

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=95.06  E-value=0.034  Score=42.60  Aligned_cols=97  Identities=14%  Similarity=0.206  Sum_probs=66.7

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCC
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      +...++++.+||-+|+|. |..+..+++.. . .+++++.+++..+.+++......+ . .  .+     ..+   ....
T Consensus        11 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~-~-~v~~vD~s~~~~~~a~~~~~~v~~-~-~--~d-----~~~---~~~~   75 (170)
T 3i9f_A           11 PNIFEGKKGVIVDYGCGN-GFYCKYLLEFA-T-KLYCIDINVIALKEVKEKFDSVIT-L-S--DP-----KEI---PDNS   75 (170)
T ss_dssp             HHHHSSCCEEEEEETCTT-CTTHHHHHTTE-E-EEEEECSCHHHHHHHHHHCTTSEE-E-S--SG-----GGS---CTTC
T ss_pred             HhcCcCCCCeEEEECCCC-CHHHHHHHhhc-C-eEEEEeCCHHHHHHHHHhCCCcEE-E-e--CC-----CCC---CCCc
Confidence            334578889999999876 77888888766 3 899999999988888875211111 1 1  11     111   2457


Q ss_pred             ccEEEEccCC------hHHHHHHHHhhcCCCEEEEecc
Q 020928          210 IDVSFDCVGF------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       210 ~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +|+|+....-      ...+..+.+.|+++|+++....
T Consensus        76 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  113 (170)
T 3i9f_A           76 VDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDW  113 (170)
T ss_dssp             EEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence            9999854332      2457888999999999988754

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.05  E-value=0.058  Score=42.59  Aligned_cols=95  Identities=16%  Similarity=0.280  Sum_probs=61.6

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhcCCC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      ++++ +||-+|+|. |..+..+++. |. .+++++.+++..+.+++.    +....+. ..   +...    +. .....
T Consensus        28 ~~~~-~vLdiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~---d~~~----~~-~~~~~   94 (202)
T 2kw5_A           28 IPQG-KILCLAEGE-GRNACFLASL-GY-EVTAVDQSSVGLAKAKQLAQEKGVKITTV-QS---NLAD----FD-IVADA   94 (202)
T ss_dssp             SCSS-EEEECCCSC-THHHHHHHTT-TC-EEEEECSSHHHHHHHHHHHHHHTCCEEEE-CC---BTTT----BS-CCTTT
T ss_pred             CCCC-CEEEECCCC-CHhHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCceEEE-Ec---Chhh----cC-CCcCC
Confidence            5667 999899876 7777777775 76 899999999887777653    2211111 11   1110    10 01357


Q ss_pred             ccEEEEccCC------hHHHHHHHHhhcCCCEEEEecc
Q 020928          210 IDVSFDCVGF------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       210 ~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +|+|+.+...      ...+..+.+.|+++|+++....
T Consensus        95 fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  132 (202)
T 2kw5_A           95 WEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGF  132 (202)
T ss_dssp             CSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred             ccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999875331      2356777889999999987653

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=95.05  E-value=0.078  Score=43.70  Aligned_cols=97  Identities=22%  Similarity=0.238  Sum_probs=64.7

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC---CCEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG---ADETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g---~~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      ..++++.+||-+|+|. |..+..+++. +. .+++++.+++..+.+++.-   ...+.....   +..    .+. ....
T Consensus        35 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---d~~----~~~-~~~~  103 (263)
T 2yqz_A           35 HPKGEEPVFLELGVGT-GRIALPLIAR-GY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQA---DAR----AIP-LPDE  103 (263)
T ss_dssp             CCSSSCCEEEEETCTT-STTHHHHHTT-TC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEES---CTT----SCC-SCTT
T ss_pred             cCCCCCCEEEEeCCcC-CHHHHHHHHC-CC-EEEEEECCHHHHHHHHHHhhccCCceEEEEc---ccc----cCC-CCCC
Confidence            3678899999999876 7777788876 65 8999999999888887641   111111111   110    010 0135


Q ss_pred             CccEEEEccC-----C-hHHHHHHHHhhcCCCEEEEe
Q 020928          209 GIDVSFDCVG-----F-DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       209 ~~d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~  239 (319)
                      .+|+|+....     . ...+..+.+.|+++|+++..
T Consensus       104 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          104 SVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             CEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            6999986543     1 34678888999999998876

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.04  E-value=0.17  Score=43.24  Aligned_cols=87  Identities=18%  Similarity=0.236  Sum_probs=56.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      .+|.|+|+|.+|...+..+...|. .|.+.++++++.+.+.+.|...   . .   +..+.+        ...|+||-|+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~-~---~~~~~~--------~~~DvVi~av   94 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGARL---G-R---TPAEVV--------STCDITFACV   94 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCEE---C-S---CHHHHH--------HHCSEEEECC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCEE---c-C---CHHHHH--------hcCCEEEEeC
Confidence            579999999999998888888898 5888888888877777666421   1 1   111111        1367888888


Q ss_pred             CChHHHHHHHH-------hhcCCCEEEEec
Q 020928          218 GFDKTMSTALN-------ATRPGGKVCLIG  240 (319)
Q Consensus       218 g~~~~~~~~~~-------~l~~~G~~v~~g  240 (319)
                      ..+......+.       .+.++..++.++
T Consensus        95 ~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s  124 (316)
T 2uyy_A           95 SDPKAAKDLVLGPSGVLQGIRPGKCYVDMS  124 (316)
T ss_dssp             SSHHHHHHHHHSTTCGGGGCCTTCEEEECS
T ss_pred             CCHHHHHHHHcCchhHhhcCCCCCEEEECC
Confidence            75434444432       344555555554

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=95.02  E-value=0.13  Score=45.44  Aligned_cols=86  Identities=15%  Similarity=0.145  Sum_probs=51.4

Q ss_pred             cCC-CCCCeEEEEC-CCHHHHHHHHHHHH-cCCCeEEEecCChhH----------------HHHHHHcCCCEe-eccC-C
Q 020928          132 ANV-GPETNVMIMG-SGPIGLVTLLAARA-FGAPRIIITDVDVQR----------------LSIARNLGADET-AKVS-T  190 (319)
Q Consensus       132 ~~~-~~~~~vlI~G-~g~vG~~ai~la~~-~g~~~vv~v~~~~~~----------------~~~~~~~g~~~v-~~~~-~  190 (319)
                      ..+ ..++++||+| ++++|.++...+.. .|+ .|+.++++.+.                .+.+++.|.... +..+ .
T Consensus        41 ~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvt  119 (405)
T 3zu3_A           41 GPIANGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAF  119 (405)
T ss_dssp             CCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             CCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCC
Confidence            455 5567778888 59999988887766 899 66666543321                223455564322 2222 2


Q ss_pred             CCcchhHHHHHhhhhcCCCccEEEEccCC
Q 020928          191 DIEDVDTDVGKIQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       191 ~~~~~~~~i~~~~~~~~~~~d~v~d~~g~  219 (319)
                      +.++....+.++.+.. +.+|+++++.|.
T Consensus       120 d~~~v~~~v~~i~~~~-G~IDiLVNNAG~  147 (405)
T 3zu3_A          120 SDEIKQLTIDAIKQDL-GQVDQVIYSLAS  147 (405)
T ss_dssp             SHHHHHHHHHHHHHHT-SCEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHc-CCCCEEEEcCcc
Confidence            2334444444444433 579999999875

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.02  E-value=0.11  Score=42.99  Aligned_cols=41  Identities=12%  Similarity=0.077  Sum_probs=31.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHH---cCCCeEEEecCChhHHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARA---FGAPRIIITDVDVQRLSIA  177 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~---~g~~~vv~v~~~~~~~~~~  177 (319)
                      .++++||+| +|++|.+++..+..   .|+ +|+.+++++++.+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~   49 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHH
Confidence            356788888 69999988887766   798 788888887765433

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.01  E-value=0.13  Score=42.49  Aligned_cols=34  Identities=26%  Similarity=0.508  Sum_probs=29.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +.+|+|+|+|++|..++..+.+.|+..+..+|..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999999999888887543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.00  E-value=0.27  Score=41.82  Aligned_cols=89  Identities=15%  Similarity=0.131  Sum_probs=59.4

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      ..+|.|+|.|.+|....+.+...|. .|++.++++++.+.+.+.|....    .   +..+.+        ...|+||-+
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~----~---~~~e~~--------~~aDvVi~~   72 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAHLC----E---SVKAAL--------SASPATIFV   72 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCEEC----S---SHHHHH--------HHSSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeec----C---CHHHHH--------hcCCEEEEE
Confidence            4579999999999999888888898 68888999998888777665321    1   111111        136888888


Q ss_pred             cCChHHHHHHH-----HhhcCCCEEEEecc
Q 020928          217 VGFDKTMSTAL-----NATRPGGKVCLIGL  241 (319)
Q Consensus       217 ~g~~~~~~~~~-----~~l~~~G~~v~~g~  241 (319)
                      +..+......+     ..+.++..++.++.
T Consensus        73 vp~~~~~~~v~~~~~l~~~~~g~ivid~st  102 (306)
T 3l6d_A           73 LLDNHATHEVLGMPGVARALAHRTIVDYTT  102 (306)
T ss_dssp             CSSHHHHHHHHTSTTHHHHTTTCEEEECCC
T ss_pred             eCCHHHHHHHhcccchhhccCCCEEEECCC
Confidence            87654333322     23455566666554

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=94.99  E-value=0.03  Score=43.26  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=61.1

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHhhhhcCC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      ..++++||-+|+|. |..++.+++. +...+++++.+++..+.+++    .+.. .+...   ..++.+.+..    ...
T Consensus        29 ~~~~~~vLDlGcG~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~----~~~   99 (177)
T 2esr_A           29 YFNGGRVLDLFAGS-GGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLL---KMEAERAIDC----LTG   99 (177)
T ss_dssp             CCCSCEEEEETCTT-CHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEE---CSCHHHHHHH----BCS
T ss_pred             hcCCCeEEEeCCCC-CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEE---ECcHHHhHHh----hcC
Confidence            67888999998765 6677777776 65589999999988877765    2322 11111   1233222211    234


Q ss_pred             CccEEEEccCC-----hHHHHHHH--HhhcCCCEEEEecc
Q 020928          209 GIDVSFDCVGF-----DKTMSTAL--NATRPGGKVCLIGL  241 (319)
Q Consensus       209 ~~d~v~d~~g~-----~~~~~~~~--~~l~~~G~~v~~g~  241 (319)
                      .+|+|+-...-     ...+..+.  +.|+++|.++....
T Consensus       100 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A          100 RFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence            69999864221     12344444  67899999876543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=94.98  E-value=0.063  Score=46.01  Aligned_cols=98  Identities=16%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC---------CCEeeccCCCCcchhHHHHHhhhh
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG---------ADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g---------~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      +++.+||++|+|. |..+..+++..+..++++++.+++..+.+++.-         ...+...   ..|..+.+..    
T Consensus        76 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~---~~D~~~~l~~----  147 (314)
T 1uir_A           76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLV---IDDARAYLER----  147 (314)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE---ESCHHHHHHH----
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEE---EchHHHHHHh----
Confidence            5668999998766 667778888765558999999999888877631         0111111   1232222221    


Q ss_pred             cCCCccEEEEccC-------------ChHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVG-------------FDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g-------------~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+|+-...             ..+.++.+.+.|+++|.++...
T Consensus       148 ~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            2457999874322             1346888999999999988653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=94.96  E-value=0.11  Score=41.39  Aligned_cols=104  Identities=15%  Similarity=0.249  Sum_probs=68.0

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      +....++++.+||-+|+|. |..+..+++..+ ...+++++.+++..+.+++.    +...+........+       +.
T Consensus        30 ~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-------~~  101 (219)
T 3dh0_A           30 LKEFGLKEGMTVLDVGTGA-GFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK-------IP  101 (219)
T ss_dssp             HHHHTCCTTCEEEESSCTT-CTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTB-------CS
T ss_pred             HHHhCCCCCCEEEEEecCC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccccc-------CC
Confidence            4556788999999999876 778888888762 22899999999877776653    32211111111111       10


Q ss_pred             hhcCCCccEEEEccCC------hHHHHHHHHhhcCCCEEEEecc
Q 020928          204 NAMGSGIDVSFDCVGF------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                       .....+|+|+....-      ...+..+.+.|+++|+++....
T Consensus       102 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  144 (219)
T 3dh0_A          102 -LPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDW  144 (219)
T ss_dssp             -SCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEe
Confidence             124569999864331      2467888999999999988753

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=94.96  E-value=0.25  Score=46.41  Aligned_cols=103  Identities=16%  Similarity=0.252  Sum_probs=61.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh--hHHHHHHHcCCCEeeccCCCC-cchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV--QRLSIARNLGADETAKVSTDI-EDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~--~~~~~~~~~g~~~v~~~~~~~-~~~~~~i~~~~~~~~~~~d  211 (319)
                      .++++||+| ++++|.+..+.+...|+ +|++.++..  +..+.+++.|...... ..+- .+....+.++.+.. +.+|
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~~~i~~~g~~~~~~-~~Dv~~~~~~~~~~~~~~~-G~iD  397 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGA-KVVVNDFKDATKTVDEIKAAGGEAWPD-QHDVAKDSEAIIKNVIDKY-GTID  397 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHHTTCEEEEE-CCCHHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCC-EEEEEeCccHHHHHHHHHhcCCeEEEE-EcChHHHHHHHHHHHHHhc-CCCC
Confidence            356788888 59999999998888999 576665422  2233344445432211 1111 22223333343333 4799


Q ss_pred             EEEEccCCh----------H---------------HHHHHHHhh--cCCCEEEEecc
Q 020928          212 VSFDCVGFD----------K---------------TMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      +++++.|..          +               ..+.+++.|  +.+|+++.+++
T Consensus       398 iLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS  454 (604)
T 2et6_A          398 ILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITS  454 (604)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            999999852          1               235556666  34689998874

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=94.95  E-value=0.068  Score=44.58  Aligned_cols=100  Identities=21%  Similarity=0.334  Sum_probs=66.3

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      ..++++.+||-+|+|. |..+..+++......+++++.++...+.+++.    +...+.....   +..    .+. ...
T Consensus        33 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---d~~----~~~-~~~  103 (276)
T 3mgg_A           33 TVYPPGAKVLEAGCGI-GAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQA---NIF----SLP-FED  103 (276)
T ss_dssp             CCCCTTCEEEETTCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC---CGG----GCC-SCT
T ss_pred             ccCCCCCeEEEecCCC-CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEc---ccc----cCC-CCC
Confidence            5678999999999876 77888888886334899999999887777653    3322211111   111    111 124


Q ss_pred             CCccEEEEccC-----C-hHHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSFDCVG-----F-DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+|+|+....     . ...+..+.+.|+++|.++...
T Consensus       104 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          104 SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            57999985431     1 246788899999999998764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=94.95  E-value=0.032  Score=46.41  Aligned_cols=78  Identities=22%  Similarity=0.175  Sum_probs=47.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .++++||+| +|.+|.+++..+...|+ +|+.++++.++.+.   ... ..+..+ .+.++....+.++.+.. +++|++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~---~~~-~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD~l  100 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSAD---PDI-HTVAGDISKPETADRIVREGIERF-GRIDSL  100 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSS---TTE-EEEESCTTSHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccc---Cce-EEEEccCCCHHHHHHHHHHHHHHC-CCCCEE
Confidence            467899998 59999999998888899 67777776543211   111 111111 12223333344443333 479999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      +++.|.
T Consensus       101 v~nAg~  106 (260)
T 3un1_A          101 VNNAGV  106 (260)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999874

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.94  E-value=0.11  Score=43.78  Aligned_cols=43  Identities=16%  Similarity=0.137  Sum_probs=36.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  182 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~  182 (319)
                      +|.|+|.|.+|....+.+...|. .|.+.++++++.+.+.+.|.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   45 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGA   45 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTC
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            68899999999988887777897 68888999988887777664

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=94.93  E-value=0.2  Score=46.07  Aligned_cols=82  Identities=22%  Similarity=0.327  Sum_probs=50.9

Q ss_pred             CCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH----HHH---HHHcCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          134 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR----LSI---ARNLGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       134 ~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~----~~~---~~~~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ++++.++||+| +|.+|..++..+...|+++++.+.++...    .+.   +++.|....+ +..+-.+ .+.+.++.+.
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~-~~~Dvtd-~~~v~~~~~~  333 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVH-AACDVAE-RDALAALVTA  333 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEE-EECCSSC-HHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEE-EEeCCCC-HHHHHHHHhc
Confidence            56788999997 69999999888888898667777776521    222   3334533211 1111112 2234444432


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                        ..+|.||++.|.
T Consensus       334 --~~ld~VVh~AGv  345 (511)
T 2z5l_A          334 --YPPNAVFHTAGI  345 (511)
T ss_dssp             --SCCSEEEECCCC
T ss_pred             --CCCcEEEECCcc
Confidence              579999999884

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=94.92  E-value=0.2  Score=45.58  Aligned_cols=100  Identities=20%  Similarity=0.281  Sum_probs=64.0

Q ss_pred             cCCC--CCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          132 ANVG--PETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       132 ~~~~--~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ...+  ++++||=.|+|+ |..++++|+..+ ...|++++.++++.+.+++    +|...+.....+..++.       .
T Consensus       111 L~~~~~~g~~VLDl~aGp-G~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~-------~  182 (479)
T 2frx_A          111 LFADGNAPQRVMDVAAAP-GSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFG-------A  182 (479)
T ss_dssp             HTTTTCCCSEEEESSCTT-SHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHH-------H
T ss_pred             hCcccCCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhh-------h
Confidence            3445  999999888766 667778888764 2379999999998877754    46543322222211211       1


Q ss_pred             hcCCCccEEEE---ccCCh-------------------------HHHHHHHHhhcCCCEEEEe
Q 020928          205 AMGSGIDVSFD---CVGFD-------------------------KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       205 ~~~~~~d~v~d---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~  239 (319)
                      .....||.|+-   |.|..                         ..+..+++.|+++|+++..
T Consensus       183 ~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvys  245 (479)
T 2frx_A          183 AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS  245 (479)
T ss_dssp             HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            01346999875   44321                         2466778899999998864

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=94.89  E-value=0.11  Score=47.02  Aligned_cols=100  Identities=21%  Similarity=0.274  Sum_probs=64.6

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ..+.+++++||=.|+|+ |..++++|+.++- ..|++++.++++.+.+++    +|.. +.....   |...    +...
T Consensus        96 ~L~~~~g~~VLDlgaGp-G~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~---Da~~----l~~~  166 (464)
T 3m6w_A           96 LLDPKPGERVLDLAAAP-GGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQA---PPRA----LAEA  166 (464)
T ss_dssp             HHCCCTTCEEEESSCTT-CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECS---CHHH----HHHH
T ss_pred             hcCcCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEEC---CHHH----hhhh
Confidence            35678999998888766 6667777777542 379999999998877654    5665 322221   2222    1111


Q ss_pred             cCCCccEEEE---ccCC-------------------------hHHHHHHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSFD---CVGF-------------------------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~d---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ....||.|+-   |.|.                         ...+..+++.|+++|+++..
T Consensus       167 ~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvys  228 (464)
T 3m6w_A          167 FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYS  228 (464)
T ss_dssp             HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            2457999873   3221                         23566778899999998853

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=94.88  E-value=0.1  Score=45.06  Aligned_cols=44  Identities=20%  Similarity=0.287  Sum_probs=36.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  181 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g  181 (319)
                      .+.+|.|+|.|.+|...++.++..|. +|++.++++++ +..+++|
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g  188 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV-NVEKELK  188 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH-HHHHHHT
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcC
Confidence            46789999999999999999999998 78888887766 4444555

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=94.87  E-value=0.3  Score=39.53  Aligned_cols=100  Identities=16%  Similarity=0.228  Sum_probs=62.7

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhH----HHHHHHcCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQR----LSIARNLGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~----~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ...++++++||-+|+|. |..+..+++..| ...|++++.++..    .+.++...--..+.  .   +..... .+. .
T Consensus        72 ~~~~~~~~~vLDlG~G~-G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~--~---d~~~~~-~~~-~  143 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAAS-GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVI--E---DARHPH-KYR-M  143 (233)
T ss_dssp             CCCCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEEC--S---CTTCGG-GGG-G
T ss_pred             eecCCCCCEEEEEcccC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEE--c---ccCChh-hhc-c
Confidence            45688999999999887 888889998864 2389999999653    34444421111111  1   111100 011 1


Q ss_pred             cCCCccEEEEccCChH----HHHHHHHhhcCCCEEEE
Q 020928          206 MGSGIDVSFDCVGFDK----TMSTALNATRPGGKVCL  238 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~~----~~~~~~~~l~~~G~~v~  238 (319)
                      ....+|+|+.....++    .+..+.+.|+++|+++.
T Consensus       144 ~~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i  180 (233)
T 2ipx_A          144 LIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVI  180 (233)
T ss_dssp             GCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEE
Confidence            1357999987655432    25568889999999876

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.86  E-value=0.09  Score=43.32  Aligned_cols=84  Identities=20%  Similarity=0.270  Sum_probs=47.5

Q ss_pred             CCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEec-CChhH-H---HHHHHcCCC-EeeccC-CCCcchhHHHHHhhhh
Q 020928          134 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD-VDVQR-L---SIARNLGAD-ETAKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       134 ~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~-~~~~~-~---~~~~~~g~~-~v~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      ..+++++||+| +|++|..++..+...|+ +|+.++ ++.++ .   +.+++.+.. ..+..+ .+.++....+.++.+.
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            45678899998 69999999988888898 565554 33322 2   223333422 122212 1222333344444433


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +++|++|++.|.
T Consensus        89 ~-g~id~lv~~Ag~  101 (256)
T 3ezl_A           89 V-GEIDVLVNNAGI  101 (256)
T ss_dssp             T-CCEEEEEECCCC
T ss_pred             c-CCCCEEEECCCC
Confidence            3 479999999884

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.85  E-value=0.44  Score=41.51  Aligned_cols=45  Identities=18%  Similarity=0.310  Sum_probs=37.7

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  182 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~  182 (319)
                      ..+|.|+|.|.+|......+...|. .|++.++++++.+.+.+.|+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~   66 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGI   66 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            3589999999999999988888898 78899999988877766553

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.85  E-value=0.15  Score=41.46  Aligned_cols=74  Identities=16%  Similarity=0.017  Sum_probs=46.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHc--CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAF--GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~--g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .+.++||+| +|.+|..+++.+...  |. .|+++++++++.+.+ ..+... +..+-.  + .+.+.++.    .++|+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~-~~~D~~--d-~~~~~~~~----~~~d~   72 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADV-FIGDIT--D-ADSINPAF----QGIDA   72 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTE-EECCTT--S-HHHHHHHH----TTCSE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeE-EEecCC--C-HHHHHHHH----cCCCE
Confidence            467899998 699999999988877  67 788888887665432 112221 111111  1 12333333    25899


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      ||++.|.
T Consensus        73 vi~~a~~   79 (253)
T 1xq6_A           73 LVILTSA   79 (253)
T ss_dssp             EEECCCC
T ss_pred             EEEeccc
Confidence            9998873

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=94.84  E-value=0.12  Score=45.28  Aligned_cols=85  Identities=19%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             CCCCCeEEEEC-CCHHHHHH-HHHHHHcCCCeEEEecCChh----------------HHHHHHHcCCCEe-eccCCC-Cc
Q 020928          134 VGPETNVMIMG-SGPIGLVT-LLAARAFGAPRIIITDVDVQ----------------RLSIARNLGADET-AKVSTD-IE  193 (319)
Q Consensus       134 ~~~~~~vlI~G-~g~vG~~a-i~la~~~g~~~vv~v~~~~~----------------~~~~~~~~g~~~v-~~~~~~-~~  193 (319)
                      ...++++||+| ++++|+++ +.+|...|+ .++.+....+                -.+.+++.|.... +.-+-. .+
T Consensus        47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA-~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e  125 (401)
T 4ggo_A           47 AKAPKNVLVLGCSNGYGLASRITAAFGYGA-ATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDE  125 (401)
T ss_dssp             SCCCCEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHH
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHHhhCCC-CEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHH
Confidence            35678999998 59999874 556767788 4555543221                1245566664332 333322 23


Q ss_pred             chhHHHHHhhhhcCCCccEEEEccCCh
Q 020928          194 DVDTDVGKIQNAMGSGIDVSFDCVGFD  220 (319)
Q Consensus       194 ~~~~~i~~~~~~~~~~~d~v~d~~g~~  220 (319)
                      .....+.++.+ ..+++|+++.+++.+
T Consensus       126 ~i~~vi~~i~~-~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          126 IKAQVIEEAKK-KGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHHHH-TTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHHH-hcCCCCEEEEecccc
Confidence            33344444444 356899999998864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.83  E-value=0.054  Score=45.38  Aligned_cols=90  Identities=17%  Similarity=0.110  Sum_probs=60.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      .+|||+|+|.+|..++..+...|. .|+++++++++.+.+...+...+ ..+-.  ++    .      -.++|+||.+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~D~~--d~----~------~~~~d~vi~~a   71 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPL-LWPGE--EP----S------LDGVTHLLIST   71 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEE-ESSSS--CC----C------CTTCCEEEECC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEE-Eeccc--cc----c------cCCCCEEEECC
Confidence            579999999999999998888898 78888898888777766554332 11111  11    1      24789999998


Q ss_pred             CCh----HHHHHHHHhhcC----CCEEEEecc
Q 020928          218 GFD----KTMSTALNATRP----GGKVCLIGL  241 (319)
Q Consensus       218 g~~----~~~~~~~~~l~~----~G~~v~~g~  241 (319)
                      +..    .....+++.++.    -.+++.++.
T Consensus        72 ~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           72 APDSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             CCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             CccccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            752    233444454433    267887763

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=94.82  E-value=0.15  Score=45.79  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=66.0

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ...+.+++++||-.|+|+ |..+.++++..+-..|++++.++.+.+.+++    +|....+ ...+..+..   ..+   
T Consensus       240 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~-~~~D~~~~~---~~~---  311 (429)
T 1sqg_A          240 TWLAPQNGEHILDLCAAP-GGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATV-KQGDGRYPS---QWC---  311 (429)
T ss_dssp             HHHCCCTTCEEEEESCTT-CHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEE-EECCTTCTH---HHH---
T ss_pred             HHcCCCCcCeEEEECCCc-hHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEE-EeCchhhch---hhc---
Confidence            345678999999998877 7777888887653489999999988777655    3542111 111111111   111   


Q ss_pred             cCCCccEEEE---ccCC-------------------------hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFD---CVGF-------------------------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+..+|.|+-   |.|.                         ...+..+.+.|+++|+++...
T Consensus       312 ~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            1357999874   4332                         134677778899999988654

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=94.80  E-value=0.094  Score=43.66  Aligned_cols=76  Identities=22%  Similarity=0.340  Sum_probs=46.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .++++||+| +|++|.++++.+...|+ +|+.++++.+..+.      ...+..+ ....+....+.++.+.. +++|++
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~------~~~~~~Dv~~~~~~~~~~~~~~~~~-g~iD~l   98 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAA------DLHLPGDLREAAYADGLPGAVAAGL-GRLDIV   98 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCC------SEECCCCTTSHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHh------hhccCcCCCCHHHHHHHHHHHHHhc-CCCCEE
Confidence            468899998 69999999998888898 78888776544221      1111111 11112222233333322 479999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      +++.|.
T Consensus        99 vnnAg~  104 (266)
T 3uxy_A           99 VNNAGV  104 (266)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999885

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=94.79  E-value=0.57  Score=40.56  Aligned_cols=112  Identities=18%  Similarity=0.224  Sum_probs=73.6

Q ss_pred             HHhcCCCCCCeEEEE-CCCHHHHHHHHHHHHcCCCeEEEe--cCChhHHHHHHHcCCCEeeccC----------------
Q 020928          129 CRRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVS----------------  189 (319)
Q Consensus       129 l~~~~~~~~~~vlI~-G~g~vG~~ai~la~~~g~~~vv~v--~~~~~~~~~~~~~g~~~v~~~~----------------  189 (319)
                      .++..++++++.+|. .+|..|+++...|+.+|.+-+|++  ..++.|.+.++.+|+..+..-.                
T Consensus        78 ~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~~~~~~~~~~~~~~  157 (344)
T 3vc3_A           78 EEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLE  157 (344)
T ss_dssp             HHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCcchHHHHHHHHHHh
Confidence            345678888766665 689999999999999999655555  3467788999999987654200                


Q ss_pred             ---------C-CCc-chh----HHHHHhhhhcCCCccEEEEccCChHHHHHH---HHhhcCCCEEEEec
Q 020928          190 ---------T-DIE-DVD----TDVGKIQNAMGSGIDVSFDCVGFDKTMSTA---LNATRPGGKVCLIG  240 (319)
Q Consensus       190 ---------~-~~~-~~~----~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~---~~~l~~~G~~v~~g  240 (319)
                               . .++ .+.    ..-.++.+..+..+|.++-++|+..++.-+   ++...+.-+++.+.
T Consensus       158 ~~~~~~~~~~~~np~~~~a~~~t~g~EI~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vigVe  226 (344)
T 3vc3_A          158 NTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVE  226 (344)
T ss_dssp             HSTTEECCCTTTCHHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             hccCceeccccccchhHHHHHHHHHHHHHHHhCCCceEEEEecCCccchHHHhhhhHhhCCCceEEEEc
Confidence                     0 000 000    011234444456799999999987655444   44556777887765

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=94.78  E-value=0.065  Score=45.31  Aligned_cols=87  Identities=23%  Similarity=0.243  Sum_probs=59.4

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|..+++.++.+|. +|++.++++++.+.     . .   ..   .+    +.++.    ...|+|+-
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~-----~-~---~~---~~----l~ell----~~aDiV~l  179 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQNV-----D-V---IS---ES----PADLF----RQSDFVLI  179 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCCCTTC-----S-E---EC---SS----HHHHH----HHCSEEEE
T ss_pred             ecchheeeccCchhHHHHHHHHhhCc-EEEEEecccccccc-----c-c---cc---CC----hHHHh----hccCeEEE
Confidence            46799999999999999999999999 78888876544221     0 0   00   12    22222    24788888


Q ss_pred             ccCCh-HH----HHHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFD-KT----MSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~-~~----~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      ++... +.    -...++.|+++..++.++...
T Consensus       180 ~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~  212 (290)
T 3gvx_A          180 AIPLTDKTRGMVNSRLLANARKNLTIVNVARAD  212 (290)
T ss_dssp             CCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGG
T ss_pred             EeeccccchhhhhHHHHhhhhcCceEEEeehhc
Confidence            87742 11    145678899999999887543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=94.77  E-value=0.12  Score=40.45  Aligned_cols=99  Identities=16%  Similarity=0.253  Sum_probs=63.7

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      +.....++.+||-+|+|. |..+..+++. |. .+++++.++...+.+++.    +...+.....   +..    ++.  
T Consensus        26 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---d~~----~~~--   93 (199)
T 2xvm_A           26 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVV---DLN----NLT--   93 (199)
T ss_dssp             HHTTTSCSCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEEC---CGG----GCC--
T ss_pred             HHhhccCCCeEEEEcCCC-CHHHHHHHHC-CC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEc---chh----hCC--
Confidence            335566788999999875 7778888876 76 899999999887777652    3211111111   111    111  


Q ss_pred             cCCCccEEEEccCC--------hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVGF--------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+|+....-        ...+..+.+.|+++|+++.+.
T Consensus        94 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           94 FDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             CCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            13579999865321        235777888999999977654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	319
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	5e-35
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	4e-31
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	4e-23
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	3e-17
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	2e-16
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	6e-16
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	7e-16
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	8e-16
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	1e-15
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	5e-15
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	6e-15
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	7e-15
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	8e-15
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	2e-14
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	5e-14
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	5e-14
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	1e-12
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	4e-12
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	4e-11
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	9e-11
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	2e-10
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	2e-10
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	4e-10
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	2e-09
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	6e-09
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	9e-09
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	1e-08
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	2e-08
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	2e-07
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	6e-07
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	6e-06
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	1e-04
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	1e-04
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	6e-04
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	0.002
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	0.002

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 5e-35
 Identities = 73/173 (42%), Positives = 109/173 (63%), Gaps = 2/173 (1%)

Query: 111 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 170
           V+ EEGA+ EPLSVG+HACRR  V     V++ G+GPIG+VTLL A+A GA ++++TD+ 
Sbjct: 1   VTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS 60

Query: 171 VQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT 230
             RLS A+ +GAD   ++S +         K++  +G   +V+ +C G + ++   + AT
Sbjct: 61  ATRLSKAKEIGADLVLQISKESPQEIAR--KVEGQLGCKPEVTIECTGAEASIQAGIYAT 118

Query: 231 RPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGKID 283
           R GG + L+GL     TV L  AA REVD+ G+FRY +TWP+ I  L S  ++
Sbjct: 119 RSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVN 171

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score =  112 bits (281), Expect = 4e-31
 Identities = 76/171 (44%), Positives = 115/171 (67%), Gaps = 1/171 (0%)

Query: 111 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD 170
           VSLEEGA+ EPLSVGVHACRRA V   T V+++G+GPIGLV++LAA+A+GA  +      
Sbjct: 1   VSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60

Query: 171 VQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT 230
            +RL +A+N GAD T  V    E+  + + +I++A+G   +V+ DC G +K ++  +N T
Sbjct: 61  -RRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINIT 119

Query: 231 RPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTWPLCIEFLRSGK 281
           R GG + L+G+    +TV L  A ARE+D+  +FRY + +P+ +E + SG+
Sbjct: 120 RTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMVASGR 170

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 4e-23
 Identities = 60/144 (41%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG 65
              C  +V Y +  R  NFIVKKPMV+GHE +G +E+VGS VK L+ GDRVA+EPG    
Sbjct: 41  VGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRE 100

Query: 66  HCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVG 125
           +   CK G YNL P + F  +PP +G+L     H A  CYKLPDNV         PL   
Sbjct: 101 NDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLV-THRFPLEKA 159

Query: 126 VHACRRANVGPETNVMIMGSGPIG 149
           + A      G    +M+    P  
Sbjct: 160 LEAFETFKKGLGLKIML-KCDPSD 182

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 76.5 bits (187), Expect = 3e-17
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 12/148 (8%)

Query: 15  YDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGS 74
            D ++       K P+++GHE  G++E +G+ V  ++ GD+V       CG C  CK+ +
Sbjct: 48  SDSSVLKEIIPSKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSN 107

Query: 75  YNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGV-------- 126
            N C +            +  +     K  Y L    +  E  +   ++V          
Sbjct: 108 SNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVN 167

Query: 127 ----HACRRANVGPETNVMIMGSGPIGL 150
                      +     ++  G G   +
Sbjct: 168 FLVSTKLTLDQINKAFELLSSGQGVRSI 195

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 73.5 bits (179), Expect = 2e-16
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 4/141 (2%)

Query: 5   VTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISC 64
           + A  + +              K P++ GHE  GI+EEVG  V  L+VGDRV +    S 
Sbjct: 32  IKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSA 91

Query: 65  -GHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS 123
            GHC  C +G   LC   +       +G  A      A    K+PDN  +E     E ++
Sbjct: 92  CGHCDYCLSGQETLCEHQKNA-GYSVDGGYAEYCRAAADYVVKIPDNTIIEV-QPLEKIN 149

Query: 124 VGVHACRRANVGPETNVMIMG 144
                  +  +     V+ + 
Sbjct: 150 EVFDRMLKGQINGRV-VLTLE 169

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 73.0 bits (178), Expect = 6e-16
 Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 16/150 (10%)

Query: 24  FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMR- 82
              +  +V+GHE  G + E G +V++L++GD V++   ++CG C  CK     +C  +  
Sbjct: 56  TTAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNP 115

Query: 83  --------FFGSPPTNGSLAHKVVHPAK--LCYKLPDNVS-LEEGAMCEPLSVGVHACRR 131
                   +       G  A  V+ P       KLPD    +E+  + E + V V +   
Sbjct: 116 ARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDD 175

Query: 132 ANVGPETNVMIMGSGPIGLVTLLAARAFGA 161
           A  G         +G      +   + F A
Sbjct: 176 APRGYG----EFDAGVPKKFVIDPHKTFSA 201

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 72.2 bits (176), Expect = 7e-16
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 4/141 (2%)

Query: 5   VTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALE-PGIS 63
           + A  + +                P + GHE  G +  VGS V  ++ GDRV +     +
Sbjct: 37  IEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTA 96

Query: 64  CGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA-MCEPL 122
           CG C  C  G   LC   +       NG  A  V+        LP NV         + +
Sbjct: 97  CGCCEHCLTGWETLCESQQNT-GYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDI 155

Query: 123 SVGVHACRRANVGPETNVMIM 143
           +  +   R   +     V+ M
Sbjct: 156 NQILDQMRAGQIEGRI-VLEM 175

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 72.0 bits (175), Expect = 8e-16
 Identities = 61/141 (43%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG 65
              C  +V Y +  R A+FIVK PMVIGHE +G + +VG  VK L+ GDRVA+EPG+ C 
Sbjct: 35  VGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCR 94

Query: 66  HCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSV 124
            C  CK G YNLCP++ F  +PP +G+LA   VH A  C+KLPDN ++++       L  
Sbjct: 95  RCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQ 154

Query: 125 GVHACRRANVGPETNVMIMGS 145
            V A   A    +  + +M S
Sbjct: 155 TVDAFEAARKKADNTIKVMIS 175

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 71.8 bits (175), Expect = 1e-15
 Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 19/150 (12%)

Query: 7   AYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDR-----VALEPG 61
                        R  +  V  P+++GHE AG + EV  E + L          +    G
Sbjct: 37  LSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRG 96

Query: 62  ISCGHCSLCKAG-SYNLCPEMRFFG-------SPPTNGSLA-HKVVHPAKLCYKLPDNVS 112
           I+CG C  CK      LCP  + +G        P   G  + H V+ P     K+ + ++
Sbjct: 97  ITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKIT 156

Query: 113 LEEGAMCEPLSVGVHACRRANVGPETNVMI 142
                   PL     A           V++
Sbjct: 157 HR-----LPLKEANKALELMESREALKVIL 181

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 70.0 bits (170), Expect = 5e-15
 Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 10/138 (7%)

Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SC 64
            AYC         +R        P V GHE  G +  VG +V+    GD V +   + SC
Sbjct: 32  IAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSC 91

Query: 65  GHCSLCKAGSYNLCPEMRFFGSPPTNGSLAH-------KVVHPAKLCYKLPDNVSLEEGA 117
            HC  C+ G  N C  M    + PT     H       ++V   +   ++       E  
Sbjct: 92  KHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVA--DIEMI 149

Query: 118 MCEPLSVGVHACRRANVG 135
             + ++       R +V 
Sbjct: 150 RADQINEAYERMLRGDVK 167

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 69.6 bits (169), Expect = 6e-15
 Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 15  YDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGS 74
           +       +  VK P+ +GHE AG IEEVG EV     GD VA+ P    G+C  C+ G 
Sbjct: 49  FGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGE 108

Query: 75  YNLCPEMRFFGSPPTNGSLAHKVVHPA-KLCYKLPDNVSLEEGAM-CEPLSVGVHACRRA 132
            +LC   R+ G    +G+ A  V+ P  K  YKL     +    M  E  +  +      
Sbjct: 109 EHLCDSPRWLGI-NFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLENF 167

Query: 133 NVGPET 138
                 
Sbjct: 168 KAIGRQ 173

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 69.9 bits (170), Expect = 7e-15
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 19/153 (12%)

Query: 117 AMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI 176
            + + L  G H    A VGP + V + G+GP+GL    +AR  GA  +I+ D++  RL+ 
Sbjct: 6   CLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAH 65

Query: 177 ARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD---------------K 221
           A+  G +      +    +   +  +       +D + D VGF+                
Sbjct: 66  AKAQGFEIA--DLSLDTPLHEQIAALLG--EPEVDCAVDAVGFEARGHGHEGAKHEAPAT 121

Query: 222 TMSTALNATRPGGKVCLIGLAKTEMTVALTPAA 254
            +++ +  TR  GK+ + GL  TE   A+  AA
Sbjct: 122 VLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAA 154

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 69.2 bits (168), Expect = 8e-15
 Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 5/145 (3%)

Query: 111 VSLEEGAM-CEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV 169
           + LE   M  + ++ G H    A++   ++V+++G G +GL+ +  A+  GA RII    
Sbjct: 1   MPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60

Query: 170 DVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA 229
               +  A+  GA +      + ++   +   ++   G G+D      G  +T+S A+  
Sbjct: 61  RPICVEAAKFYGATDI----LNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKM 116

Query: 230 TRPGGKVCLIGLAKTEMTVALTPAA 254
            +PGG +  I    +   + +    
Sbjct: 117 VKPGGIISNINYHGSGDALLIPRVE 141

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 68.8 bits (167), Expect = 2e-14
 Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 22/160 (13%)

Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG 65
                        +         P+V+GHE AGI+E VG  V   + G++V       CG
Sbjct: 40  IIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCG 99

Query: 66  HCSLCKAGSYNLCPEMRFFGSP--------------------PTNGSLAHKVVHPAKLCY 105
            C  C++   N C +     SP                        + +   V       
Sbjct: 100 ECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVA 159

Query: 106 KLPDNVSLEEGA-MCEPLSVGVHAC-RRANVGPETNVMIM 143
           K+  +V L+E      PL     A     +      V+ +
Sbjct: 160 KIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 199

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 67.0 bits (162), Expect = 5e-14
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 7   AYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGH 66
             C  ++   Q M       K P  +GHE  G IEEV   V+ LE GD V L P ++ G 
Sbjct: 36  GVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGT 95

Query: 67  CSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGA-MCEPLSVG 125
           C  C+AG    C  + F G    +G  A  +    +   KLP +V +E      + ++  
Sbjct: 96  CLACRAGEDMHCENLEFPGL-NIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDV 154

Query: 126 VHACRRANVGPET 138
           +    +  V    
Sbjct: 155 LERLEKGEVLGRA 167

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (163), Expect = 5e-14
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 9/126 (7%)

Query: 26  VKKPMVIGHECAGIIEEVGSEVKS-LEVGDRVALEPG-ISCGHCSLCKAGSYNLCPEMRF 83
           +K P+V+GHE  G + ++G +  S L+VG RV +     SC  C  CK  +   C +   
Sbjct: 60  MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVT 119

Query: 84  FGSPPT------NGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHACRRANVGP 136
             S P        G  A+ V         +P+N+ +E   + E  +        + +V  
Sbjct: 120 TYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEKGDVRY 179

Query: 137 ETNVMI 142
              ++ 
Sbjct: 180 RFTLVG 185

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 1e-12
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 23/147 (15%)

Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG 65
                       T+  A+     P+++GH  AGI+E VG  V  L+ GD V       CG
Sbjct: 38  IIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCG 97

Query: 66  HCSLCKAGSYNLCPEMRFFGSPPT--------------------NGSLAHKVVHPAKLCY 105
            C  C     NLC ++R                             + +   V       
Sbjct: 98  ECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVA 157

Query: 106 KLPDNVSLEEGAMCEPLSVGVHACRRA 132
           K+   + ++E       ++      +A
Sbjct: 158 KIDPLIKVDEFV---THNLSFDEINKA 181

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 62.2 bits (150), Expect = 4e-12
 Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 27/142 (19%)

Query: 15  YDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGS 74
            D            P+V+GHECAGI+E VG  V + + GD+V       C  C LC +  
Sbjct: 48  TDINATDPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPL 107

Query: 75  YNLCPEMRFFGSPPT------------------------NGSLAHKVVHPAKLCYKLPDN 110
            NLC ++R F  P                            S +   V       ++ D 
Sbjct: 108 TNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDE 167

Query: 111 VSLEEGAMCEPLSVGVHACRRA 132
             L+        ++   +   A
Sbjct: 168 FDLDLLV---THALPFESINDA 186

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 58.8 bits (141), Expect = 4e-11
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 13/178 (7%)

Query: 111 VSLEEGAMCEPLSVGV----HACRRA--NVGPETNVMIMGSGPIGLVTLLAARAFGAPRI 164
           +S E+     PL+        A ++A   + P   V I+G G +G + +   +      +
Sbjct: 1   ISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATV 60

Query: 165 IITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMS 224
           I  DV  ++L +A  LGAD       D          ++   G G++V+ D VG   T+ 
Sbjct: 61  IALDVKEEKLKLAERLGADHVVDARRDPVKQV-----MELTRGRGVNVAMDFVGSQATVD 115

Query: 225 TALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGK 281
                    G++ ++G    E+        + EV   G            +     GK
Sbjct: 116 YTPYLLGRMGRLIIVG-YGGELRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGK 172

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.0 bits (139), Expect = 9e-11
 Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 5/183 (2%)

Query: 109 DNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD 168
           D++ +   AMC   +                V+I G+GP+GL  ++ AR+ GA  +I+  
Sbjct: 1   DDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIA 60

Query: 169 VDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALN 228
               RL +A  +GAD T        +            G G D   +  G  + +     
Sbjct: 61  GSPNRLKLAEEIGADLTLNRRETSVEERRKAIM-DITHGRGADFILEATGDSRALLEGSE 119

Query: 229 ATRPGGKVCLIGLAKTEMTVALTPAAA---REVDVIGIFRY-RSTWPLCIEFLRSGKIDV 284
             R GG   + G+A  +  V          +     GI+    S +   +         +
Sbjct: 120 LLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLL 179

Query: 285 KPL 287
             L
Sbjct: 180 SKL 182

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 56.9 bits (136), Expect = 2e-10
 Identities = 32/155 (20%), Positives = 49/155 (31%), Gaps = 13/155 (8%)

Query: 6   TAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCG 65
                       T+       +K M++GHE  G + EVGSEVK  + GDRV +       
Sbjct: 31  PLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDW 90

Query: 66  HCSLCKAGSYNLCPEM----RFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP 121
                +AG       M    +F             V         LP +V L +      
Sbjct: 91  RSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTH-- 148

Query: 122 LSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAA 156
           +  G      A       +++M   P  L+  +  
Sbjct: 149 VYHGFDHIEEA-------LLLMKDKPKDLIKAVVI 176

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 56.5 bits (135), Expect = 2e-10
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 8/162 (4%)

Query: 125 GVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 183
           G  A    A V P +   + G G +GL  ++  +  GA RII  D++ ++   A+ LGA 
Sbjct: 16  GYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 75

Query: 184 ETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK 243
           +        + V      I      G+D S DC G  +T+  A++ T  G   C +  AK
Sbjct: 76  DCLNPRELDKPVQDV---ITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK 132

Query: 244 TEMTVALTPAAAREVDVIGIF----RYRSTWPLCIEFLRSGK 281
            +     T        + G F    +   + P  +   ++ K
Sbjct: 133 VDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKK 174

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 56.2 bits (134), Expect = 4e-10
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 11/159 (6%)

Query: 130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS 189
           + A V   +   + G G +GL  ++  +A GA RII  D++  + + A+ +GA E     
Sbjct: 22  KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV--- 78

Query: 190 TDIEDVDTDVGKIQNAMGS-GIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTV 248
            + +D    + ++   M + G+D SF+ +G   TM TAL+  +    V +I     +   
Sbjct: 79  -NPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQN 137

Query: 249 ALTPAA--AREVDVIGI----FRYRSTWPLCIEFLRSGK 281
                          G     F+ + + P  +    + K
Sbjct: 138 LSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKK 176

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 26/141 (18%)

Query: 15  YDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGS 74
            D  +     +   P++ GHE AGI+E +G  V ++  GD+V       CG C +CK   
Sbjct: 48  SDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPE 107

Query: 75  YNLCPEMRFFGSP--------------------PTNGSLAHKVVHPAKLCYKLPDNVSLE 114
            N C +                               + +   V       K+    +L 
Sbjct: 108 GNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFAL- 166

Query: 115 EGAMCEPLSVGVHACRRANVG 135
                +PL   V    + N G
Sbjct: 167 -----DPLITHVLPFEKINEG 182

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 6e-09
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 17/180 (9%)

Query: 113 LEEGAMCEPLSVGVH-----ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT 167
           L++      L  G+      A   A + P +   + G G +GL  ++  +  GA RII  
Sbjct: 3   LDKVC---LLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGV 59

Query: 168 DVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTAL 227
           D++  + + A+  GA E        + +      +      G+D SF+C+G  K M  AL
Sbjct: 60  DINKDKFARAKEFGATECINPQDFSKPIQE---VLIEMTDGGVDYSFECIGNVKVMRAAL 116

Query: 228 NATRPG-GKVCLIGLAKTEMTVALTPAA-AREVDVIGIF----RYRSTWPLCIEFLRSGK 281
            A   G G   ++G+A +   +A  P          G      +   + P  +    S K
Sbjct: 117 EACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKK 176

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 52.3 bits (124), Expect = 9e-09
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 6/153 (3%)

Query: 15  YDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGS 74
            D  +R   + V  P V+GHE +GIIE +G  V  L+VGD V L  G     C+ C  G+
Sbjct: 43  TDLIVRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCG-KCTQCNTGN 101

Query: 75  YNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRR--A 132
              C E         +G+ +            + ++    + +         +   +   
Sbjct: 102 PAYCSEFFGR---NFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK 158

Query: 133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRII 165
           +   +  V       I    + + +      II
Sbjct: 159 DFPFDQLVKFYAFDEINQAAIDSRKGITLKPII 191

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 12/177 (6%)

Query: 113 LEEGAM--CEPLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV 169
           L+   +  C  +S G  A    A V P +   + G G +GL  ++   + GA RII  D+
Sbjct: 3   LDTVCLLGC-GVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL 61

Query: 170 DVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA 229
           +  +   A+  GA +   V+ +           +   G G+D S +CVG    M  AL +
Sbjct: 62  NPDKFEKAKVFGATDF--VNPNDHSEPISQVLSKMTNG-GVDFSLECVGNVGVMRNALES 118

Query: 230 TRPGGKVCLIGLAKTEMTVALTPAA-AREVDVIGI----FRYRSTWPLCIEFLRSGK 281
              G  V ++        VA  P          G     F+ +   P  ++     K
Sbjct: 119 CLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKK 175

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 9/163 (5%)

Query: 125 GVHA-CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD 183
           G  A    A V P +   + G G +G   ++  +A GA RII       +   A  LGA 
Sbjct: 15  GYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT 74

Query: 184 ETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRP-GGKVCLIGLA 242
           E        + +      I      G+D + +C G  +TM  AL +T    G   ++GLA
Sbjct: 75  ECLNPKDYDKPIYE---VICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLA 131

Query: 243 KTEMTVALTPAA-AREVDVIGIF---RYRSTWPLCIEFLRSGK 281
                + L P        + G              ++     K
Sbjct: 132 SPNERLPLDPLLLLTGRSLKGSVFGGFKGEEVSRLVDDYMKKK 174

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 11/173 (6%)

Query: 111 VSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD 168
           V   E A  +C  ++V     ++ N  P   V I G G +G V +  ARA G   +   D
Sbjct: 1   VEFAEIAPILCAGVTV-YKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAID 58

Query: 169 VDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALN 228
           +D  +L +AR LGA  T     +                 G          +     A+ 
Sbjct: 59  IDDAKLELARKLGASLTVNARQEDPVEA------IQRDIGGAHGVLVTAVSNSAFGQAIG 112

Query: 229 ATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSG 280
             R GG + L+GL   +    +     + + + G     R+     ++F   G
Sbjct: 113 MARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEALDFAGEG 165

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 6e-07
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 10/162 (6%)

Query: 122 LSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL 180
            S G  A  +   V P +  ++ G G +GL  ++  ++ GA RII  D++  +   A  +
Sbjct: 14  FSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73

Query: 181 GADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVC-LI 239
           GA E        + +      +    G+ +  +F+ +G  +TM  AL +         ++
Sbjct: 74  GATECISPKDSTKPI---SEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVV 130

Query: 240 GLAKTEMTVALTP-AAAREVDVIGIF----RYRSTWPLCIEF 276
           G+  +   +   P          G      + R   P  +  
Sbjct: 131 GVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTE 172

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 28/175 (16%), Positives = 51/175 (29%), Gaps = 16/175 (9%)

Query: 114 EEGAMCEPLSVGV----HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV 169
           E+ A   PL           R    GP   V ++G G +G + +          ++    
Sbjct: 4   EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGI-KLAHAMGAHVVAFTT 62

Query: 170 DVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA 229
              +   A+ LGADE          V++       A     D   + V     +      
Sbjct: 63  SEAKREAAKALGADEV---------VNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTL 113

Query: 230 TRPGGKVCLIGL-AKTEMTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGKI 282
            +  G + L+G  A    +  +     +   + G            ++F     I
Sbjct: 114 LKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGI 168

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARN-----LGA 182
               ++ P   V+  GSG  G ++L  ++A G+  R+I  +V      +A+        +
Sbjct: 91  LSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149

Query: 183 DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD-----KTMSTALNATRPGGKVC 237
            + + V    ++VD     I  A      ++FD V  D      T+       + GG   
Sbjct: 150 WKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCA 209

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 3/88 (3%)

Query: 64  CGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLS 123
             +      G   +        S      L+     P      LP N+SL+E  + + L+
Sbjct: 74  SSNDPRFAEGDEVIATSYELGVSRDG--GLSEYASVPGDWLVPLPQNLSLKEAMVDQLLT 131

Query: 124 VGVHACRRANVGPETNVMIMGSGPIGLV 151
           +           P     I+ +   G V
Sbjct: 132 IVDREVSL-EETPGALKDILQNRIQGRV 158

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 24/190 (12%), Positives = 57/190 (30%), Gaps = 20/190 (10%)

Query: 111 VSLEEGA--MCEPLSVGVHACRRANVGPETNVMIMG--SGPIGLVTLLAARAFGAPRIII 166
           +++ +GA     PL+  +       + P  +  I    +  +G       +      I +
Sbjct: 1   LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISV 60

Query: 167 TDVDVQRLSIARNLGADETAKV----STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKT 222
                    +  +L      +V      +  +    + +     G    ++ +CVG  K+
Sbjct: 61  IRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVG-GKS 119

Query: 223 MSTALNATRPGGKVCLI-GLAKTEMTVALTPAAAREVDVIGIF----------RYRSTWP 271
            +         G +    G++   +T+  +    +     G +             ST  
Sbjct: 120 STGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLN 179

Query: 272 LCIEFLRSGK 281
             I +   GK
Sbjct: 180 QIIAWYEEGK 189

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 6/157 (3%)

Query: 127 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADET 185
            A R+A++ P   ++++G+G       +      +   II     +     A+  GAD  
Sbjct: 18  RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV 77

Query: 186 AKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE 245
              S      D      +     G+D   D    +KT+S    A    GK  ++GL   +
Sbjct: 78  INASMQ----DPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGAD 133

Query: 246 MTVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGK 281
           +          E+  +G     +S +   +    +GK
Sbjct: 134 LHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGK 170

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 11/174 (6%)

Query: 112 SLEEGA-MCEPLSVGVHA-CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV 169
             ++GA +  P      A    A V    +V++ G+     +           +I+ T  
Sbjct: 2   DFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG 61

Query: 170 DVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNA 229
             +   I    GA E              + KI+  +G         +  +  +S  L+ 
Sbjct: 62  TEEGQKIVLQNGAHEV-----FNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSL 116

Query: 230 TRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRST---WPLCIEFLRSG 280
              GG+V ++G   T + +      A+E  +IG+  + ST   +      L++G
Sbjct: 117 LSHGGRVIVVGSRGT-IEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAG 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.97
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.97
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.97
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.96
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.96
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.95
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.95
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.94
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.94
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.94
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.93
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.93
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.93
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.93
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.93
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.93
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.93
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.93
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.93
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.93
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.92
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.92
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.92
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.92
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.92
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.92
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.92
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.92
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.92
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.92
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.91
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.9
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.9
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.9
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.9
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.9
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.9
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.9
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.9
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.9
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.89
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.89
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.88
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.88
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.87
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.84
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.83
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.8
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.77
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.72
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.71
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.71
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.46
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.24
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.95
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.21
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.08
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.99
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.95
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.94
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.89
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.88
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.78
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.74
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.72
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.66
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.62
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.51
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.48
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.47
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.46
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.42
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.41
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.4
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.38
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.35
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.34
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.33
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.31
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.3
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.26
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.26
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.22
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.21
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.19
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.15
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.15
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.13
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.12
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.1
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.1
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.08
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.06
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.04
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.01
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.01
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.99
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.97
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.96
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.96
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.96
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.95
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.93
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.93
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.93
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.93
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.93
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.9
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.89
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.89
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.86
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.86
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.86
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.86
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.84
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.83
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.83
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.75
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.74
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.73
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	96.73
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.73
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.73
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.72
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.7
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.7
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.68
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.66
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.65
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.63
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.62
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.62
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.62
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.59
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.58
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.57
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.56
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.56
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.56
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.55
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.51
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.45
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.43
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.38
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.34
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.33
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.27
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.25
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.24
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	96.18
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.07
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.06
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.93
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.75
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	95.73
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.7
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.67
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	95.66
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.63
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.61
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.59
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.52
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.51
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	95.41
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.41
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.36
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.36
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.3
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	95.27
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.21
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.19
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.19
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.19
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	95.18
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	95.17
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.15
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.13
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	95.07
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	95.03
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	95.01
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	94.98
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.97
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	94.95
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	94.91
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	94.8
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.76
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	94.74
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	94.74
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.72
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	94.68
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.65
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.48
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.44
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.43
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.29
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	94.27
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.26
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.26
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.22
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.15
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.15
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	94.11
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.11
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.07
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	94.06
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	94.02
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	94.02
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.0
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.99
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	93.96
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	93.91
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.9
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.86
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	93.78
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	93.78
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	93.59
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.57
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	93.55
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.51
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.27
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	93.26
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.26
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.22
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.19
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	93.15
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	93.13
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	93.08
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	92.99
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	92.95
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	92.91
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	92.89
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	92.85
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.83
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	92.83
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	92.83
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.81
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	92.78
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.7
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.64
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.51
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	92.49
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.45
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.33
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	92.28
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	92.26
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.25
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.25
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	92.25
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.2
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	92.13
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.02
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.0
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	91.84
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	91.73
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.73
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.73
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.68
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.68
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	91.62
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	91.54
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	91.51
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.4
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	91.4
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	91.39
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	91.38
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.22
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.22
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	91.16
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.15
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.1
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	90.97
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	90.97
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.89
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	90.82
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.72
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	90.7
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	90.63
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.43
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	90.41
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	90.4
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.25
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.25
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	90.24
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	90.22
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	90.21
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.2
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.16
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.1
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	90.03
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.97
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.95
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	89.88
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	89.77
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.57
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	89.5
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.49
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	89.49
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	89.46
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.35
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	89.23
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	89.22
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	89.11
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	89.1
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	89.1
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	89.08
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	88.98
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.94
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	88.92
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	88.89
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.88
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	88.83
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.8
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.78
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	88.75
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	88.67
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	88.3
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	88.27
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	88.1
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.09
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	88.07
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	88.04
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.03
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	87.99
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	87.99
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.97
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	87.86
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	87.85
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	87.65
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.59
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	87.56
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	87.5
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.36
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.29
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	87.02
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.88
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.86
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	86.67
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	86.61
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	86.58
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	86.54
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.21
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	86.11
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	86.04
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	86.02
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	85.95
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.91
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	85.89
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.74
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	85.73
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	85.7
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.63
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	85.58
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	85.47
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.43
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	85.37
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	85.33
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	85.06
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	84.96
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.91
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	84.9
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	84.66
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	84.66
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.56
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	84.47
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	84.28
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	84.02
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.96
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	83.84
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	83.77
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	83.5
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	83.48
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	83.36
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	83.3
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	83.26
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	83.23
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	83.0
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	82.96
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	82.87
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.73
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	82.63
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	82.53
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	82.3
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	82.29
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.08
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	81.98
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.82
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	81.71
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	81.67
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	81.62
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	81.46
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	81.41
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	80.81
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	80.64
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	80.51
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	80.19

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.97  E-value=2e-32  Score=217.58  Aligned_cols=144  Identities=42%  Similarity=0.776  Sum_probs=135.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++++++...+....++|+++|||++|+|+++|+++++|++||||+..+..+|+.|..|..|.+++|+.
T Consensus        30 Vkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~  109 (178)
T d1e3ja1          30 LQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPD  109 (178)
T ss_dssp             EEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTT
T ss_pred             EEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCCCCEEEECcccccCCccccccCCcccccc
Confidence            68999999999999998876666667889999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEEC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMG  144 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G  144 (319)
                      ..+.+....+|+|+||+.++++.++++|+++++++|+++ .++.|+|++++++++++|++|+|+|
T Consensus       110 ~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~a~~~~~~~~g~~VlVig  174 (178)
T d1e3ja1         110 LTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMI  174 (178)
T ss_dssp             CEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEE
T ss_pred             ccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHHHHHHhCCCCCCEEEEEc
Confidence            998888788999999999999999999999999999988 4889999999999999999999986

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-29  Score=198.84  Aligned_cols=171  Identities=43%  Similarity=0.788  Sum_probs=155.2

Q ss_pred             CChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC
Q 020928          111 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  190 (319)
Q Consensus       111 ~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~  190 (319)
                      +|+|+||++.|+++||+++++++++++++|+|+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++++..
T Consensus         1 vS~e~Aal~epla~a~~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~   80 (171)
T d1pl8a2           1 VTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISK   80 (171)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccc
Confidence            58999999999999999999999999999999999999999999999999988999999999999999999999887543


Q ss_pred             CCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEeeccCCCH
Q 020928          191 DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTW  270 (319)
Q Consensus       191 ~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  270 (319)
                        +++.+..+.+....+.++|++|||+|++..++.++++++++|+++.+|.+..+.+++...++.|++++.|++.+.+++
T Consensus        81 --~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~~~~~~~  158 (171)
T d1pl8a2          81 --ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTW  158 (171)
T ss_dssp             --CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSCSSCH
T ss_pred             --cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEeCCHhHH
Confidence              455555566666667899999999999988999999999999999999887777888889999999999999888899


Q ss_pred             HHHHHHHHcCCCC
Q 020928          271 PLCIEFLRSGKID  283 (319)
Q Consensus       271 ~~~~~~~~~g~~~  283 (319)
                      +++++++++|+++
T Consensus       159 ~~al~li~~gkid  171 (171)
T d1pl8a2         159 PVAISMLASKSVN  171 (171)
T ss_dssp             HHHHHHHHTTSCC
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999999984

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.97  E-value=2.7e-29  Score=198.23  Aligned_cols=170  Identities=45%  Similarity=0.781  Sum_probs=155.5

Q ss_pred             CChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC
Q 020928          111 VSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  190 (319)
Q Consensus       111 ~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~  190 (319)
                      +|+|+||++.|+++||+++++++++++++|+|+|+|++|++++|+|+..|+ +|++++++++|+++++++|++.++.++.
T Consensus         1 VS~e~Aal~ePla~a~~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~~~   79 (170)
T d1e3ja2           1 VSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDP   79 (170)
T ss_dssp             SCHHHHHTHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEeccc
Confidence            589999999999999999999999999999999999999999999999998 7999999999999999999999887776


Q ss_pred             CCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEeeccCCCH
Q 020928          191 DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRYRSTW  270 (319)
Q Consensus       191 ~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  270 (319)
                      ...+..+..+.+.+..+.++|++|||+|++..++.++++++++|+++.+|....+.+++...++.|++++.|++.+.+++
T Consensus        80 ~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~gs~~~~~~~  159 (170)
T d1e3ja2          80 AKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDY  159 (170)
T ss_dssp             TTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSCSSCH
T ss_pred             cccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCHHHHHHCCCEEEEEECCHHHH
Confidence            66676777777777778899999999999888999999999999999999877767788888999999999998887899


Q ss_pred             HHHHHHHHcCC
Q 020928          271 PLCIEFLRSGK  281 (319)
Q Consensus       271 ~~~~~~~~~g~  281 (319)
                      +++++++++|+
T Consensus       160 ~~ai~li~~Gk  170 (170)
T d1e3ja2         160 PIALEMVASGR  170 (170)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHcCC
Confidence            99999999986

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-31  Score=210.33  Aligned_cols=145  Identities=41%  Similarity=0.689  Sum_probs=131.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++++++...+.+..++|+++|||++|+|+++|+++++|++||||+..+..+|++|.+|..|++++|+.
T Consensus        36 Vkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~  115 (185)
T d1pl8a1          36 LRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPS  115 (185)
T ss_dssp             EEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTT
T ss_pred             EEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeeecccccceecceeccccchhhccchhchhcc
Confidence            68999999999999998766566667889999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECCCH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGP  147 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~g~  147 (319)
                      ..+++....+|+|+||+.++.++++++|+++++++|+++ ++++++++++..++++|++||| |+|+
T Consensus       116 ~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~-pl~~a~~a~~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         116 IFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRF-PLEKALEAFETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             CEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEE-EGGGHHHHHHHHHTTCCSEEEE-ECCT
T ss_pred             ceeeecccccccceEEEEEchHHEEECCCCCCHHHHHHH-HHHHHHHHHHHhCCCCCCEEEE-EeCC
Confidence            998888788999999999999999999999999988654 5677888888888999999998 5543

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.96  E-value=6.6e-30  Score=201.10  Aligned_cols=140  Identities=29%  Similarity=0.441  Sum_probs=126.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++.++|........++|+++|||++|+|+++|+++++|++||||+..+..+|+.|..|..|.+++|++
T Consensus        30 Vkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~  109 (171)
T d1h2ba1          30 VRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCEN  109 (171)
T ss_dssp             EEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTT
T ss_pred             EEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCCCCCEEEEcCccCCCCcccccccccccccc
Confidence            68999999999999998866444445789999999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEE
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMI  142 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI  142 (319)
                      ..+.+. ..+|+|+||+.++++.++++|++++++.|+++ .+++|+|++++++++ .|++|||
T Consensus       110 ~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~al~~~~~-~G~~VlI  170 (171)
T d1h2ba1         110 LEFPGL-NIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLEKGEV-LGRAVLI  170 (171)
T ss_dssp             CBCBTT-TBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHHHHTTCC-SSEEEEE
T ss_pred             ccccee-ecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHHHHhcCC-CCCEEEe
Confidence            877665 46899999999999999999999999877755 688999999988888 8999998

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.95  E-value=1.8e-28  Score=196.36  Aligned_cols=139  Identities=25%  Similarity=0.412  Sum_probs=117.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|..    +.++|+++|||++|+|+++|+++++|++||||+.. ..+|++|.+|.+|.+++|++
T Consensus        33 Vkv~a~gic~sD~~~~~G~~----~~~~P~i~GHE~~G~V~~vG~~v~~~~vGDrVv~~-~~~Cg~C~~C~~g~~~~C~~  107 (194)
T d1f8fa1          33 VKVVATGMCHTDLIVRDQKY----PVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLS-YGYCGKCTQCNTGNPAYCSE  107 (194)
T ss_dssp             EEEEEEECCHHHHHHHTTSS----CCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEEC-CCCCSSSHHHHTTCGGGCTT
T ss_pred             EEEEEEEecCchHhhhhhcc----cccCCcccccceEEEeeecCccceeEccCceeeee-cccccCChhhhCCCcccccc
Confidence            68999999999999998753    45789999999999999999999999999999665 45899999999999999987


Q ss_pred             cccc---cCC-------------------CCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCC
Q 020928           81 MRFF---GSP-------------------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPET  138 (319)
Q Consensus        81 ~~~~---~~~-------------------~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~  138 (319)
                      ....   +..                   ...|+|+||.++++..++++|++++++++                      
T Consensus       108 ~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~~i~~~~~----------------------  165 (194)
T d1f8fa1         108 FFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQL----------------------  165 (194)
T ss_dssp             HHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTTCCGGGG----------------------
T ss_pred             cccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCCCCCcccE----------------------
Confidence            4221   110                   01378999999999999999999887654                      


Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEe
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIIT  167 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v  167 (319)
                       +++.|+|++|++++|+|+.+|+++|+++
T Consensus       166 -~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         166 -VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             -EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             -EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence             3456889999999999999999777765

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.5e-28  Score=194.87  Aligned_cols=140  Identities=20%  Similarity=0.345  Sum_probs=121.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCC-CCCCCCCEEEEccCc-cCCCCccccCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEV-KSLEVGDRVALEPGI-SCGHCSLCKAGSYNLC   78 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v-~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~   78 (319)
                      |||.++|||++|++++.|...   ..++|+++|||++|+|+++|+++ +.+++||||...+.. +|+.|.+|..|.+++|
T Consensus        38 Vkv~a~giC~sDl~~~~g~~~---~~~~P~i~GHE~~G~Vv~vG~~v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C  114 (192)
T d1piwa1          38 IKIEACGVCGSDIHCAAGHWG---NMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYC  114 (192)
T ss_dssp             EEEEEEEECHHHHHHHTTTTS---CCCSSEECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGC
T ss_pred             EEEeeeCCCcchHHHHcCCCC---CCCCCcCcccccccchhhcccccccccCCCCeeeEeeeccCCCCchhhhcCCcccc
Confidence            689999999999999987542   34789999999999999999987 669999999876544 7999999999999999


Q ss_pred             CCccccc------CCCCCCcceeEEeecCCceEeCCCCCChhhhhccch-hHHHHHHHHhcCCCCCCeEEEE
Q 020928           79 PEMRFFG------SPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHACRRANVGPETNVMIM  143 (319)
Q Consensus        79 ~~~~~~~------~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~-~~~a~~~l~~~~~~~~~~vlI~  143 (319)
                      +.....+      +...+|+|+||+.+++..++++|+++++++|+++.+ +.+||+++++++++++++|+|+
T Consensus       115 ~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         115 TKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEKGDVRYRFTLVGY  186 (192)
T ss_dssp             TTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEEEESSHHHHHHHHHHHHHTCCSSEEEEECC
T ss_pred             cccccccccccccccccccceeeEEEeehHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            8866542      334579999999999999999999999998887765 6789999999999999999985

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.94  E-value=7.3e-28  Score=194.02  Aligned_cols=140  Identities=24%  Similarity=0.294  Sum_probs=122.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++.+.|..   ....+|.++|||++|+|+++|+++++|++||||+..+..+|+.|.+|..|++++|+.
T Consensus        38 Ikv~a~giCgsD~~~~~g~~---~~~~~p~i~GhE~~G~v~~vG~~v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~  114 (199)
T d1cdoa1          38 IKIIATGVCHTDLYHLFEGK---HKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVK  114 (199)
T ss_dssp             EEEEEEECCHHHHHHHHTTC---CTTSCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSC
T ss_pred             EEEEEEEEecchhhhhhhcc---cccccccccccccceEEEEEcCCCceecCCCEEEEeeeccccccccccCCCcccccc
Confidence            68999999999999998854   234689999999999999999999999999999999999999999999999999976


Q ss_pred             cccccCCC--------------------CCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHh-cCCCCCC
Q 020928           81 MRFFGSPP--------------------TNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRR-ANVGPET  138 (319)
Q Consensus        81 ~~~~~~~~--------------------~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~~~  138 (319)
                      ........                    ..|+|+||+.+++..++++|++++++++|++ .++.|++++++. .+.+.|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~  194 (199)
T d1cdoa1         115 GWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIR  194 (199)
T ss_dssp             SGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSE
T ss_pred             cccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            44321111                    1499999999999999999999999998877 478899999965 7889999


Q ss_pred             eEEEE
Q 020928          139 NVMIM  143 (319)
Q Consensus       139 ~vlI~  143 (319)
                      +|||+
T Consensus       195 tVlv~  199 (199)
T d1cdoa1         195 TVLSL  199 (199)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99984

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.94  E-value=2.1e-26  Score=181.40  Aligned_cols=167  Identities=21%  Similarity=0.307  Sum_probs=139.2

Q ss_pred             CChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC
Q 020928          111 VSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  189 (319)
Q Consensus       111 ~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~  189 (319)
                      +|+|+|+++ .+++|+|++++++++++|++|+|+|+|++|++++|+||.+|+++|++++++++|+++++++|+++++++.
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~   80 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYK   80 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGG
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcccccccc
Confidence            578999988 5899999999999999999999999999999999999999998899999999999999999999998764


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCcccccch----HHHhcCcEEEEeec
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALT----PAAAREVDVIGIFR  265 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~----~~~~~~~~i~~~~~  265 (319)
                        ++++.+.+.+++  .+.++|++|||+|++..++.++++++++|+++.+|.......++..    ....+++++.++..
T Consensus        81 --~~~~~~~v~~~t--~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~  156 (174)
T d1jqba2          81 --NGHIEDQVMKLT--NGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLC  156 (174)
T ss_dssp             --GSCHHHHHHHHT--TTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCC
T ss_pred             --chhHHHHHHHHh--hccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecC
Confidence              356667776665  3678999999999988899999999999999999976554433322    23446788888765


Q ss_pred             c--CCCHHHHHHHHHcCC
Q 020928          266 Y--RSTWPLCIEFLRSGK  281 (319)
Q Consensus       266 ~--~~~~~~~~~~~~~g~  281 (319)
                      .  +..++.+.+++++|+
T Consensus       157 ~~~r~~~e~l~~li~~gk  174 (174)
T d1jqba2         157 PGGRLRAERLRDMVVYNR  174 (174)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CCCcccHHHHHHHHHcCC
Confidence            3  334667888888775

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=8.9e-31  Score=210.71  Aligned_cols=153  Identities=24%  Similarity=0.322  Sum_probs=124.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|..    +.++|+++|||++|+|+++|++|++|++||||+..+..+|+.|.+|.+|+++.|..
T Consensus        37 Vkv~a~giC~sDl~~~~G~~----~~~~P~v~GHE~~G~Vv~vG~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~  112 (201)
T d1kola1          37 LKVVSTNICGSDQHMVRGRT----TAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLT  112 (201)
T ss_dssp             EEEEEEECCHHHHHHHTTCS----CCCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSS
T ss_pred             EEEEEEEEcchhhhhhcCCc----ccccceeccceeeeeeeccccccccccccceeEEeeeeeccCChhhhCCCcccccc
Confidence            68999999999999998753    45789999999999999999999999999999998888999999999999998876


Q ss_pred             cccc---------cCCCCCCcceeEEeecC--CceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEECCCHH
Q 020928           81 MRFF---------GSPPTNGSLAHKVVHPA--KLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPI  148 (319)
Q Consensus        81 ~~~~---------~~~~~~g~~~e~~~~~~--~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~g~v  148 (319)
                      ....         .....+|+|+||+++|.  ..+++||++.+..+++.+ .+++++++++...+.+.+    ++|+|++
T Consensus       113 ~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~~~~~~~~~~~~~~~~~~a~~~~~~~~g----~~g~G~v  188 (201)
T d1kola1         113 VNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDDAPRGYG----EFDAGVP  188 (201)
T ss_dssp             SCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHHHHTCCHHHHHTEEEECGGGHHHHHH----HHHHTCS
T ss_pred             cccccccccccccCCCccccccccEEEeehHHCeEEECCCCCChHHHHHHHHHHHHHHHHHHhCCCCCe----EEeeCHH
Confidence            4321         12345799999999985  369999998555555544 567777777655444333    2589999


Q ss_pred             HHHHHHHHHHcCC
Q 020928          149 GLVTLLAARAFGA  161 (319)
Q Consensus       149 G~~ai~la~~~g~  161 (319)
                      |++++|+||++|+
T Consensus       189 G~~~i~~ak~~GA  201 (201)
T d1kola1         189 KKFVIDPHKTFSA  201 (201)
T ss_dssp             CEEEECTTCSSCC
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999999885

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.93  E-value=5.8e-26  Score=178.86  Aligned_cols=167  Identities=23%  Similarity=0.338  Sum_probs=147.3

Q ss_pred             CChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeecc
Q 020928          111 VSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  188 (319)
Q Consensus       111 ~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~  188 (319)
                      +|+.|||+++ ...|||+++++.+++++++|+|+| +|++|++++|+++..|...|++++++++++++++++|+++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~   80 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINA   80 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeecc
Confidence            4788999886 567899999999999999999999 59999999999999998899999999999999999999998875


Q ss_pred             CCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-C
Q 020928          189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-R  267 (319)
Q Consensus       189 ~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~  267 (319)
                      .  .+++.+.+.+.+  .+.++|++|||+|++..++.++++++++|+++.+|....+.+++...++++++++.|++.+ .
T Consensus        81 ~--~~~~~~~~~~~~--~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs~~~~~  156 (170)
T d1jvba2          81 S--MQDPLAEIRRIT--ESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQ  156 (170)
T ss_dssp             T--TSCHHHHHHHHT--TTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECCSCCH
T ss_pred             C--CcCHHHHHHHHh--hcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHHHhCCcEEEEEecCCH
Confidence            4  456666665544  4678999999999988889999999999999999988777888888899999999999876 5


Q ss_pred             CCHHHHHHHHHcCC
Q 020928          268 STWPLCIEFLRSGK  281 (319)
Q Consensus       268 ~~~~~~~~~~~~g~  281 (319)
                      ++++++++++++|+
T Consensus       157 ~d~~~~l~lv~~GK  170 (170)
T d1jvba2         157 SDFLGIMRLAEAGK  170 (170)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCC
Confidence            67999999999986

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.93  E-value=2.4e-25  Score=175.70  Aligned_cols=166  Identities=23%  Similarity=0.410  Sum_probs=142.3

Q ss_pred             CChhhhhccch-hHHHHHHH-HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeecc
Q 020928          111 VSLEEGAMCEP-LSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  188 (319)
Q Consensus       111 ~~~~~aa~~~~-~~~a~~~l-~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~  188 (319)
                      ++++.|+.+++ +.|||+++ +.+++++|++|+|+|+|++|++++|+|+.+|+++|++++.+++|+++++++|+++++++
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~   80 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS   80 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence            36778888874 78899997 55899999999999999999999999999999888899999999999999999999886


Q ss_pred             CCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC--CcccccchHHHhcCcEEEEeecc
Q 020928          189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK--TEMTVALTPAAAREVDVIGIFRY  266 (319)
Q Consensus       189 ~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~  266 (319)
                      .  .+++.+.+++++   ++++|+||||+|++..++.+++.++++|+++.+|...  ...+++...++++++++.|++..
T Consensus        81 ~--~~~~~~~i~~~t---~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g  155 (174)
T d1f8fa2          81 K--TQDPVAAIKEIT---DGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEG  155 (174)
T ss_dssp             T--TSCHHHHHHHHT---TSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGG
T ss_pred             C--CcCHHHHHHHHc---CCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEec
Confidence            4  457777777765   4589999999999888999999999999999999654  33467778889999999998754


Q ss_pred             ----CCCHHHHHHHHHcCC
Q 020928          267 ----RSTWPLCIEFLRSGK  281 (319)
Q Consensus       267 ----~~~~~~~~~~~~~g~  281 (319)
                          .++++++++++++|+
T Consensus       156 ~~~~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         156 SGSPKKFIPELVRLYQQGK  174 (174)
T ss_dssp             GSCHHHHHHHHHHHHHTTS
T ss_pred             CCChHHHHHHHHHHHHcCC
Confidence                346888999999885

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=5.1e-27  Score=185.61  Aligned_cols=135  Identities=25%  Similarity=0.453  Sum_probs=115.9

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCC-----CCCCCCEEEEccCccCCCCccccCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVK-----SLEVGDRVALEPGISCGHCSLCKAGSY   75 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~-----~~~~Gd~V~~~~~~~~~~~~~~~~~~~   75 (319)
                      |||.++|||++|+++++|...   ..++|+++|||++|+|+++|++|+     ++++||||+..+..+|+.|.+|+.|.+
T Consensus        34 Vkv~a~gIC~sD~~~~~G~~~---~~~~P~vlGHE~~G~V~~vG~~v~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~  110 (184)
T d1vj0a1          34 VEILSAGVCGSDVHMFRGEDP---RVPLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKE  110 (184)
T ss_dssp             EEEEEEEECHHHHHHHTTCCT---TCCSSBCCCCEEEEEEEEESSCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCC
T ss_pred             EEEEEECCCCCchhheeccCC---ccccccccceeeeeeeeEEeccccccccccccceeeeEeccccccccChhHhCccc
Confidence            689999999999999998642   236899999999999999999986     468999999999999999999999997


Q ss_pred             C-CCCCcccccC-------CCCCCcceeEEeec-CCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEE
Q 020928           76 N-LCPEMRFFGS-------PPTNGSLAHKVVHP-AKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIM  143 (319)
Q Consensus        76 ~-~~~~~~~~~~-------~~~~g~~~e~~~~~-~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~  143 (319)
                      . .|++...++.       ...+|+|+||+.++ +..++++|+++++++     ++++|+++++++++++|++|||+
T Consensus       111 ~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l~~~~-----pl~~A~~a~~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         111 PYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHRL-----PLKEANKALELMESREALKVILY  182 (184)
T ss_dssp             GGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTCCEEE-----EGGGHHHHHHHHHHTSCSCEEEE
T ss_pred             cccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCCCHHH-----HHHHHHHHHHHhCCCcCCEEEEe
Confidence            5 4787766553       23589999999996 579999999999753     45678889999999999999997

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.93  E-value=5.1e-25  Score=173.20  Aligned_cols=166  Identities=26%  Similarity=0.388  Sum_probs=136.4

Q ss_pred             Chhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC
Q 020928          112 SLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  189 (319)
Q Consensus       112 ~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~  189 (319)
                      ++++||++. .+.|+|+++ +.+++++|++|+|+|+|++|++++|+|+.+|+++|++++.+++|+++++++|+++++++.
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            577888887 578999997 569999999999999999999999999999998999999999999999999999998865


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCC-CEEEEecccCCcccccchHHHhcCcEEEEeecc--
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY--  266 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--  266 (319)
                      ..++.... +...  +.+.++|++|||+|++..++.++++++++ |+++.+|....+.+++...+. .+.++.|++..  
T Consensus        82 ~~~~~~~~-~~~~--~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~~~i~~~~~~-~~k~i~Gs~~Gs~  157 (174)
T d1e3ia2          82 ELDKPVQD-VITE--LTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVI-LGRSINGTFFGGW  157 (174)
T ss_dssp             GCSSCHHH-HHHH--HHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHH-TTCEEEECSGGGC
T ss_pred             cchhhhhh-hHhh--hhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCccccchHHHh-ccCEEEEEEeeCC
Confidence            44333322 2222  24779999999999998999999999996 999999987776666665554 46788887653  


Q ss_pred             --CCCHHHHHHHHHcCC
Q 020928          267 --RSTWPLCIEFLRSGK  281 (319)
Q Consensus       267 --~~~~~~~~~~~~~g~  281 (319)
                        .++++++++++++||
T Consensus       158 ~~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         158 KSVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHHHHHHHHCcC
Confidence              446778888888875

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=177.53  Aligned_cols=163  Identities=23%  Similarity=0.337  Sum_probs=136.2

Q ss_pred             CChhhhhccc-hhHHHHHHHH-hcCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeec
Q 020928          111 VSLEEGAMCE-PLSVGVHACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK  187 (319)
Q Consensus       111 ~~~~~aa~~~-~~~~a~~~l~-~~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~  187 (319)
                      +|+++||+++ ++.|||+++. .+++++|++|||+| +|++|++++|+|+.+|+ +++++++++++.++++++|++++++
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            5899999886 7899999985 58999999999998 59999999999999999 6888888999999999999999998


Q ss_pred             cCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-
Q 020928          188 VSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-  266 (319)
Q Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-  266 (319)
                      +.  ++++.+.+++.+  .+.++|++||++|++ .++.++++++++|+++.+|... ..+++...++.+++++.++..+ 
T Consensus        80 ~~--~~~~~~~i~~~t--~~~g~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~k~~~i~g~~~~~  153 (174)
T d1yb5a2          80 HR--EVNYIDKIKKYV--GEKGIDIIIEMLANV-NLSKDLSLLSHGGRVIVVGSRG-TIEINPRDTMAKESSIIGVTLFS  153 (174)
T ss_dssp             TT--STTHHHHHHHHH--CTTCEEEEEESCHHH-HHHHHHHHEEEEEEEEECCCCS-CEEECTHHHHTTTCEEEECCGGG
T ss_pred             cc--cccHHHHhhhhh--ccCCceEEeecccHH-HHHHHHhccCCCCEEEEEecCC-CCCCCHHHHHHCCCEEEEEEecC
Confidence            64  457777776665  477899999999965 8999999999999999998643 3567777888999999998765 


Q ss_pred             --CCCHHHHHHHHHcC
Q 020928          267 --RSTWPLCIEFLRSG  280 (319)
Q Consensus       267 --~~~~~~~~~~~~~g  280 (319)
                        .+++++++++++++
T Consensus       154 ~~~~~~~~~~~~l~~g  169 (174)
T d1yb5a2         154 STKEEFQQYAAALQAG  169 (174)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence              33466666666543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=2e-25  Score=175.07  Aligned_cols=164  Identities=23%  Similarity=0.318  Sum_probs=141.6

Q ss_pred             CChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC
Q 020928          111 VSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  189 (319)
Q Consensus       111 ~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~  189 (319)
                      +++++||.++ .+.|||++++++++++|++|+|+|+|++|++++|+||..|+ +|++++++++++++++++|+++++++.
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~~   79 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNAR   79 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCcccccccc
Confidence            5899999887 67899999999999999999999999999999999999997 899999999999999999999998754


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CC
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RS  268 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  268 (319)
                        .+++.+.+.+..    .+.+.++++.+++..++.++++++++|+++.+|....+.+++...++.+++++.|++.+ .+
T Consensus        80 --~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~~~~~  153 (166)
T d1llua2          80 --QEDPVEAIQRDI----GGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRA  153 (166)
T ss_dssp             --TSCHHHHHHHHH----SSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHH
T ss_pred             --chhHHHHHHHhh----cCCcccccccccchHHHHHHHHhcCCcEEEEEEecCCCccCCHHHHHhCCcEEEEEeecCHH
Confidence              345555554432    45677777777788999999999999999999987777788888899999999998876 56


Q ss_pred             CHHHHHHHHHcCC
Q 020928          269 TWPLCIEFLRSGK  281 (319)
Q Consensus       269 ~~~~~~~~~~~g~  281 (319)
                      +++++++++++|.
T Consensus       154 d~~e~l~l~~~Gl  166 (166)
T d1llua2         154 DLQEALDFAGEGL  166 (166)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCcC
Confidence            7899999998873

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.93  E-value=7.4e-27  Score=188.83  Aligned_cols=137  Identities=25%  Similarity=0.397  Sum_probs=117.4

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|..    +..+|+++|||++|+|+++|++|++|++||||++.+..+|+.|.+|..|.+++|+.
T Consensus        38 Vkv~a~gic~sD~~~~~G~~----~~~~P~v~GHE~~G~V~~vG~~V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~  113 (202)
T d1e3ia1          38 IQVIATCVCPTDINATDPKK----KALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGK  113 (202)
T ss_dssp             EEEEEEECCHHHHHTTCTTS----CCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTT
T ss_pred             EEEEEEEEeccccceeeeec----ccccccccccccceEEeeecCCceeccCCCEEEEEeeccccccccccCCccccccc
Confidence            68999999999999998754    45679999999999999999999999999999999999999999999999999987


Q ss_pred             cccccCC------------------------CCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCC
Q 020928           81 MRFFGSP------------------------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVG  135 (319)
Q Consensus        81 ~~~~~~~------------------------~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~  135 (319)
                      ...++..                        ...|+|+||+++++..++++|++++++.++++. ++.+.+++++.  ++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~~--~k  191 (202)
T d1e3ia1         114 LRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESINDAIDL--MK  191 (202)
T ss_dssp             CCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCGGGGEEEEEEGGGHHHHHHH--HH
T ss_pred             ccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhEEECCCCCCHHHHHHHHHHHHHHHHHHHh--CC
Confidence            6544321                        124899999999999999999999998777664 56667777754  46


Q ss_pred             CCCeEEEE
Q 020928          136 PETNVMIM  143 (319)
Q Consensus       136 ~~~~vlI~  143 (319)
                      +|++|.|+
T Consensus       192 ~G~~V~vi  199 (202)
T d1e3ia1         192 EGKSIRTI  199 (202)
T ss_dssp             TTCCSEEE
T ss_pred             CCCEEEEE
Confidence            89998875

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.5e-26  Score=182.81  Aligned_cols=139  Identities=24%  Similarity=0.342  Sum_probs=120.3

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCc-cCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGI-SCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~   79 (319)
                      |||+++|||++|++.++|...  ....+|+++|||++|+|+++|+++++|++||||+..+.. .|+.|.+|..|.+++|+
T Consensus        35 Vkv~a~gic~~D~~~~~G~~~--~~~~~P~i~GhE~~G~V~~~G~~v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~  112 (175)
T d1llua1          35 VKIEASGVCHTDLHAAEGDWP--VKPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCE  112 (175)
T ss_dssp             EEEEEEECCHHHHHHHHTCSS--SCCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCT
T ss_pred             EEEEEecCcccchhhhccCcc--ccccCCcCCCCcceEEEEEeCCCccccccCCEEEeccccccCCccccccCCcccccc
Confidence            689999999999999998542  335789999999999999999999999999999876544 79999999999999999


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEEE
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMIM  143 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~  143 (319)
                      .....+. ..+|+|+||+.++++.++++|++++++.++.+ ..+.++++.++.+.+ +|++|||+
T Consensus       113 ~~~~~G~-~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t~~~~~~~g~~-~G~~VLVl  175 (175)
T d1llua1         113 SQQNTGY-SVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQMRAGQI-EGRIVLEM  175 (175)
T ss_dssp             TCEEBTT-TBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHHHHHHHHHTTCC-SSEEEEEC
T ss_pred             ccccccc-ccccccceEEEechHHEEECCCCCChhHHHHHHhHHHHHHHHHHhCCC-CCCEEEeC
Confidence            8887765 46899999999999999999999998877755 577788887766544 69999984

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.93  E-value=2.1e-24  Score=169.94  Aligned_cols=166  Identities=22%  Similarity=0.291  Sum_probs=135.4

Q ss_pred             hhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC
Q 020928          113 LEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  190 (319)
Q Consensus       113 ~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~  190 (319)
                      +.+||++. .+.|+|+++ +++++++|++|+|+|+|++|++++|+|+..|+++|++++.+++|+++++++|+++++++..
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~   81 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD   81 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence            34677776 578999997 5699999999999999999999999999999989999999999999999999999998755


Q ss_pred             CCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcC-CCEEEEecccCCcccccchH-HHhcCcEEEEeecc--
Q 020928          191 DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRP-GGKVCLIGLAKTEMTVALTP-AAAREVDVIGIFRY--  266 (319)
Q Consensus       191 ~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~-~G~~v~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~--  266 (319)
                      .+.......+ .  +.++++|++||++|+.......+..+++ +|+++.+|.......++..+ ...++++++|++..  
T Consensus        82 ~d~~~~~~~~-~--~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~  158 (174)
T d1p0fa2          82 YDKPIYEVIC-E--KTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGF  158 (174)
T ss_dssp             CSSCHHHHHH-H--HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTCEEEECSGGGC
T ss_pred             chhHHHHHHH-H--hcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHhCCCEEEEEEeCCC
Confidence            4332333322 2  2467999999999998888888888876 59999999866655665543 45678899998743  


Q ss_pred             -CCCHHHHHHHHHcCC
Q 020928          267 -RSTWPLCIEFLRSGK  281 (319)
Q Consensus       267 -~~~~~~~~~~~~~g~  281 (319)
                       .++++++++++++|+
T Consensus       159 ~~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         159 KGEEVSRLVDDYMKKK  174 (174)
T ss_dssp             CGGGHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHcCC
Confidence             458999999999886

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=3.8e-26  Score=179.99  Aligned_cols=140  Identities=27%  Similarity=0.442  Sum_probs=119.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC-ccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~   79 (319)
                      |||+++|||++|++++++....  ...+|+++|||++|+|+++|++++++++||||+..+. ..|+.|..|..+..++|.
T Consensus        30 Vkv~a~gic~sD~~~~~~~~~~--~~~~p~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~  107 (171)
T d1rjwa1          30 VRIKACGVCHTDLHAAHGDWPV--KPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE  107 (171)
T ss_dssp             EEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCT
T ss_pred             EEEEEeeccccceeeeeccccc--ccccccccCCEEEEEEEEecccccCceeeeEEeeccccccccccccccCCCccccc
Confidence            6899999999999998865322  3578999999999999999999999999999987554 368889999999999998


Q ss_pred             CcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCCCCeEEEECC
Q 020928           80 EMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGS  145 (319)
Q Consensus        80 ~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlI~G~  145 (319)
                      .....+. ..+|+|+||+++++++++++|++++++.|+ +.++.++++++.++.+ +|++|||+|.
T Consensus       108 ~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~e~A~-l~~~~~~~~~~~~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         108 HQKNAGY-SVDGGYAEYCRAAADYVVKIPDNTIIEVQP-LEKINEVFDRMLKGQI-NGRVVLTLED  170 (171)
T ss_dssp             TCEEBTT-TBCCSSBSEEEEEGGGCEECCTTCCEEEEE-GGGHHHHHHHHHTTCC-SSEEEEECCC
T ss_pred             cccccce-eccCccccceEecHHHEEECCCCCCHHHHH-HHHHHHHHHHHHhcCC-CCCEEEEeCC
Confidence            8777654 468999999999999999999999987665 4677788888877766 4999999984

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=1.2e-24  Score=170.93  Aligned_cols=165  Identities=25%  Similarity=0.367  Sum_probs=143.6

Q ss_pred             CChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC
Q 020928          111 VSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  189 (319)
Q Consensus       111 ~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~  189 (319)
                      +|+++||+++ ...|||+++++.+++++++|||+|+|++|++++|+|+..|+ +|++++++++|.++++++|++.++++.
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~~   79 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPL   79 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceecccc
Confidence            5899999886 56789999999999999999999999999999999999999 799999999999999999999998754


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CC
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RS  268 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  268 (319)
                      .  +++...++...    .+.+.++++.+++..+...+++++++|+++.+|....+..++...++.+++++.++... .+
T Consensus        80 ~--~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~  153 (168)
T d1rjwa2          80 K--EDAAKFMKEKV----GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRK  153 (168)
T ss_dssp             T--SCHHHHHHHHH----SSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHH
T ss_pred             c--chhhhhccccc----CCCceEEeecCCHHHHHHHHHHhccCCceEecccccCCCCCCHHHHHHCCcEEEEEeeCCHH
Confidence            3  46666666554    24555566677777899999999999999999988887888888899999999999865 56


Q ss_pred             CHHHHHHHHHcCCC
Q 020928          269 TWPLCIEFLRSGKI  282 (319)
Q Consensus       269 ~~~~~~~~~~~g~~  282 (319)
                      +++++++++++|++
T Consensus       154 ~~~~~l~l~~~Gki  167 (168)
T d1rjwa2         154 DLQEALQFAAEGKV  167 (168)
T ss_dssp             HHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhCCC
Confidence            79999999999987

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.92  E-value=7.9e-25  Score=172.47  Aligned_cols=163  Identities=23%  Similarity=0.309  Sum_probs=137.9

Q ss_pred             hhhhhccc-hhHHHHHHHHh-c-CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC
Q 020928          113 LEEGAMCE-PLSVGVHACRR-A-NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  189 (319)
Q Consensus       113 ~~~aa~~~-~~~~a~~~l~~-~-~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~  189 (319)
                      +.++|+++ ++.|||+++++ . .++++++|+|+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++++.
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~   85 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR   85 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence            45667665 78899999976 3 589999999999999999999999999998899999999999999999999998864


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-CC
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-RS  268 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~  268 (319)
                      .   +..+.+.+.+  .+.++|++||++|+...++..++.++++|+++.+|... +.+++...++.+++++.|++.+ .+
T Consensus        86 ~---~~~~~~~~~~--~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~-~~~~~~~~l~~k~~~i~Gs~~~~~~  159 (172)
T d1h2ba2          86 R---DPVKQVMELT--RGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGG-ELRFPTIRVISSEVSFEGSLVGNYV  159 (172)
T ss_dssp             S---CHHHHHHHHT--TTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSS-CCCCCHHHHHHTTCEEEECCSCCHH
T ss_pred             c---cHHHHHHHhh--CCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcc-cccCCHHHHHhCCcEEEEEEecCHH
Confidence            3   3333333332  46789999999999878999999999999999999643 4577788899999999999876 56


Q ss_pred             CHHHHHHHHHcCC
Q 020928          269 TWPLCIEFLRSGK  281 (319)
Q Consensus       269 ~~~~~~~~~~~g~  281 (319)
                      +++++++++++|+
T Consensus       160 d~~~~l~l~~~GK  172 (172)
T d1h2ba2         160 ELHELVTLALQGK  172 (172)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCC
Confidence            7899999999986

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=9.4e-25  Score=173.70  Aligned_cols=166  Identities=23%  Similarity=0.343  Sum_probs=133.7

Q ss_pred             hhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC
Q 020928          113 LEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  190 (319)
Q Consensus       113 ~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~  190 (319)
                      ++.+|.+. ...|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++|+++++++..
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~   82 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE   82 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence            34455554 56899999965 78999999999999999999999999999988999999999999999999999988643


Q ss_pred             CCcchhHHHHHhhh-hcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCcccccc---hHHHhcCcEEEEeecc
Q 020928          191 DIEDVDTDVGKIQN-AMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVAL---TPAAAREVDVIGIFRY  266 (319)
Q Consensus       191 ~~~~~~~~i~~~~~-~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~i~~~~~~  266 (319)
                        .+..+..+.+.+ +.+.++|+||||+|++..++.++++++++|+++.+|......+++.   ..+++|++++.|++.+
T Consensus        83 --~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~  160 (182)
T d1vj0a2          83 --TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVS  160 (182)
T ss_dssp             --SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCC
T ss_pred             --cchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeC
Confidence              344444333333 2467899999999998789999999999999999997554433332   2356899999999886


Q ss_pred             -CCCHHHHHHHHHcC
Q 020928          267 -RSTWPLCIEFLRSG  280 (319)
Q Consensus       267 -~~~~~~~~~~~~~g  280 (319)
                       ..++++++++++++
T Consensus       161 ~~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         161 DTSHFVKTVSITSRN  175 (182)
T ss_dssp             CHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHC
Confidence             55688888888775

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=6.4e-25  Score=172.21  Aligned_cols=164  Identities=20%  Similarity=0.221  Sum_probs=130.6

Q ss_pred             CChhhhhccc-hhHHHHHHHH----hcCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCE
Q 020928          111 VSLEEGAMCE-PLSVGVHACR----RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  184 (319)
Q Consensus       111 ~~~~~aa~~~-~~~~a~~~l~----~~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~  184 (319)
                      +|++|||+++ +..|||++++    .++.++|++|||+| +|++|.+++|+|+.+|+ +|+++.+++++.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            5899999997 6789997764    37889999999998 69999999999999999 6888889999999999999999


Q ss_pred             eeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc-CCcccccchHHHhcCcEEEEe
Q 020928          185 TAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA-KTEMTVALTPAAAREVDVIGI  263 (319)
Q Consensus       185 v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~~~~~~~~~i~~~  263 (319)
                      +++++..   +.+.++   ...+.++|+|||++|++ .+...+++|+++|+++.+|.. +...+++...++.|+++++|.
T Consensus        80 vi~~~~~---~~~~~~---~~~~~gvD~vid~vgg~-~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv  152 (176)
T d1xa0a2          80 VLAREDV---MAERIR---PLDKQRWAAAVDPVGGR-TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGI  152 (176)
T ss_dssp             EEECC---------------CCSCCEEEEEECSTTT-THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred             eeecchh---HHHHHH---HhhccCcCEEEEcCCch-hHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEE
Confidence            9987532   222222   23467999999999987 899999999999999999964 555678889999999999997


Q ss_pred             eccC---CCHHHHHHHHHcCCCC
Q 020928          264 FRYR---STWPLCIEFLRSGKID  283 (319)
Q Consensus       264 ~~~~---~~~~~~~~~~~~g~~~  283 (319)
                      ....   +...++++.+. |.++
T Consensus       153 ~~~~~~~~~~~~~~~~la-g~lk  174 (176)
T d1xa0a2         153 DSVYCPMDLRLRIWERLA-GDLK  174 (176)
T ss_dssp             CSSSCCHHHHHHHHHHHH-TTTC
T ss_pred             eCCcCCHHHHHHHHHHHh-cccC
Confidence            5542   33445555553 6663

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.92  E-value=7.3e-26  Score=179.21  Aligned_cols=140  Identities=30%  Similarity=0.447  Sum_probs=117.6

Q ss_pred             CCcceEeeccCCcccccccccc-----ccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCA-----NFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSY   75 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~-----~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~   75 (319)
                      |||.++|||++|+++++|....     ....++|+++|||++|+|+++|+++++|++||||+..+..+|+.|.+|.+|.+
T Consensus        30 Vkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~  109 (177)
T d1jvba1          30 IKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEE  109 (177)
T ss_dssp             EEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCSSSHHHHTTCG
T ss_pred             EEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccCccccccCceEeeeeccccccccccccccc
Confidence            6899999999999999886422     12347899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccCCCCCCcceeEEeecCCc-eEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCeEEE
Q 020928           76 NLCPEMRFFGSPPTNGSLAHKVVHPAKL-CYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETNVMI  142 (319)
Q Consensus        76 ~~~~~~~~~~~~~~~g~~~e~~~~~~~~-~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlI  142 (319)
                      ++|+...+++. ..+|+|+||+.++... ++++|+..+.+.|+.. .++.+++++++..++ .|++|||
T Consensus       110 ~~c~~~~~~g~-~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~~-~G~~VlI  176 (177)
T d1jvba1         110 HLCDSPRWLGI-NFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLENFKA-IGRQVLI  176 (177)
T ss_dssp             GGCSSCEEBTT-TBCCSSBSEEEESCGGGEEECSSSCCCCEEEEEGGGHHHHHHHHHTTCC-CSEEEEE
T ss_pred             cccCCcceeee-ccccccccEEEEEhHHeEEECCCCChHHHHHHHHHHHHHHHHHHHhhcc-cCCceEC
Confidence            99998887765 4689999999997655 5566665555444443 588899999988877 5899987

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.92  E-value=3.5e-24  Score=169.55  Aligned_cols=167  Identities=23%  Similarity=0.291  Sum_probs=134.8

Q ss_pred             Chhhhhccc-hhHHHHHHHH-hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC
Q 020928          112 SLEEGAMCE-PLSVGVHACR-RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  189 (319)
Q Consensus       112 ~~~~aa~~~-~~~~a~~~l~-~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~  189 (319)
                      ++|+||++. .+.|+|+++. ++++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++++.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            578899887 5789999985 58999999999999999999999999999998999999999999999999999999876


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC--CcccccchHHHhcCcEEEEeecc-
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK--TEMTVALTPAAAREVDVIGIFRY-  266 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~-  266 (319)
                      ...++....++.   ..+.++|++||++|++.....+...++++|+++.++...  ..........+.+++++.|+... 
T Consensus        82 ~~~~~~~~~~~~---~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~  158 (176)
T d2fzwa2          82 DFSKPIQEVLIE---MTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGG  158 (176)
T ss_dssp             GCSSCHHHHHHH---HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGG
T ss_pred             chhhHHHHHHHH---HcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEeeeC
Confidence            544444444333   346789999999999888889999999998888775432  22333444456788999998754 


Q ss_pred             ---CCCHHHHHHHHHcCC
Q 020928          267 ---RSTWPLCIEFLRSGK  281 (319)
Q Consensus       267 ---~~~~~~~~~~~~~g~  281 (319)
                         .+++.++++++++||
T Consensus       159 ~~~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         159 WKSVESVPKLVSEYMSKK  176 (176)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHHHcCC
Confidence               345778888888875

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=7.9e-25  Score=174.47  Aligned_cols=168  Identities=19%  Similarity=0.299  Sum_probs=135.1

Q ss_pred             hhhhccc-hhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC
Q 020928          114 EEGAMCE-PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  190 (319)
Q Consensus       114 ~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~  190 (319)
                      +|||+++ ++.|||+++.+ +++++|++|||+| +|++|++++|+|+..|+ +++++++++++.++++++|+++++++. 
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~-   78 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSR-   78 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETT-
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCC-
Confidence            4677775 78999999854 7899999999997 59999999999999999 777777889999999999999998854 


Q ss_pred             CCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCcc-cccchHHHhcCcEEEEeecc---
Q 020928          191 DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTEM-TVALTPAAAREVDVIGIFRY---  266 (319)
Q Consensus       191 ~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~i~~~~~~---  266 (319)
                       ++++.+.+++++  .+.++|++||++|++ .++.++++|+++|+++.+|...... .........+++.+.++...   
T Consensus        79 -~~~~~~~v~~~t--~~~g~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (183)
T d1pqwa_          79 -SVDFADEILELT--DGYGVDVVLNSLAGE-AIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNL  154 (183)
T ss_dssp             -CSTHHHHHHHHT--TTCCEEEEEECCCTH-HHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHH
T ss_pred             -ccCHHHHHHHHh--CCCCEEEEEecccch-HHHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEEcccee
Confidence             457777777665  367899999999985 8899999999999999998543222 22222334678888776532   


Q ss_pred             -------CCCHHHHHHHHHcCCCCCCCc
Q 020928          267 -------RSTWPLCIEFLRSGKIDVKPL  287 (319)
Q Consensus       267 -------~~~~~~~~~~~~~g~~~~~~~  287 (319)
                             .+.++++++++++|++++.|+
T Consensus       155 ~~~~~~~~~~~~~v~~~i~~G~i~p~Pi  182 (183)
T d1pqwa_         155 KLQPARYRQLLQHILQHVADGKLEVLPV  182 (183)
T ss_dssp             HHCHHHHHHHHHHHHHHHHTTSSCCCCC
T ss_pred             ccCHHHHHHHHHHHHHHHHCCCCceeCC
Confidence                   345788999999999976553

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.92  E-value=5.1e-26  Score=182.49  Aligned_cols=140  Identities=21%  Similarity=0.247  Sum_probs=119.7

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|..   ....+|+++|||++|+|+++|++|+++++||||+..+..+|+.|.+|..|.+.+|+.
T Consensus        36 Vkv~a~gic~sD~~~~~G~~---~~~~~p~v~GhE~~G~V~~vG~~V~~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~  112 (197)
T d2fzwa1          36 IKIIATAVCHTDAYTLSGAD---PEGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQK  112 (197)
T ss_dssp             EEEEEEECCHHHHHHHHTCC---TTCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCT
T ss_pred             EEEEEecCCCCcHHHHcCCc---ccccccccCCcceeeEEEeecCCceecCCCCEEEEccccccccccccccCccccCcc
Confidence            68999999999999999854   235789999999999999999999999999999999999999999999999999987


Q ss_pred             ccccc---C-----------------CCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHh-cCCCCCC
Q 020928           81 MRFFG---S-----------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRR-ANVGPET  138 (319)
Q Consensus        81 ~~~~~---~-----------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~  138 (319)
                      ...+.   .                 ....|+|+||+.+++..++++|+++++++||.+. ++.+++.++++ ...+.++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~  192 (197)
T d2fzwa1         113 IRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIR  192 (197)
T ss_dssp             THHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSE
T ss_pred             ccccccccccCCccceeccCCcceecccccccceeEEEechHHEEECCCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCC
Confidence            43321   0                 0114899999999999999999999999999775 77888888855 4456888


Q ss_pred             eEEEE
Q 020928          139 NVMIM  143 (319)
Q Consensus       139 ~vlI~  143 (319)
                      +|||+
T Consensus       193 tvvvi  197 (197)
T d2fzwa1         193 TVVKI  197 (197)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            88874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.4e-25  Score=174.73  Aligned_cols=162  Identities=19%  Similarity=0.186  Sum_probs=137.5

Q ss_pred             Chhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC
Q 020928          112 SLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST  190 (319)
Q Consensus       112 ~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~  190 (319)
                      +++.||.+. ...|+|+++++.++++|++|+|+|+|++|++++|+||.+|+ +|++++++++|+++++++|+++++++..
T Consensus         2 p~e~AApl~cag~Ta~~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~~   80 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATLE   80 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeeccc
Confidence            567777776 56789999999999999999999999999999999999999 7888999999999999999999987643


Q ss_pred             CCcchhHHHHHhhhhcCCCccEEEEccCChH--HHHHHHHhhcCCCEEEEecccCCcccccchHHHhcCcEEEEeecc-C
Q 020928          191 DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDK--TMSTALNATRPGGKVCLIGLAKTEMTVALTPAAAREVDVIGIFRY-R  267 (319)
Q Consensus       191 ~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~  267 (319)
                      . .++   .++    ...++|.++||+++..  .+..++++++++|+++.+|....+..++...+..+++++.|+... .
T Consensus        81 ~-~~~---~~~----~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~g~~  152 (168)
T d1piwa2          81 E-GDW---GEK----YFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSI  152 (168)
T ss_dssp             T-SCH---HHH----SCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCCCCH
T ss_pred             h-HHH---HHh----hhcccceEEEEecCCccchHHHHHHHhhccceEEEeccccccccccHHHHHhCCcEEEEEeeCCH
Confidence            2 222   111    3468999999988652  356788999999999999987777788888899999999998775 6


Q ss_pred             CCHHHHHHHHHcCCC
Q 020928          268 STWPLCIEFLRSGKI  282 (319)
Q Consensus       268 ~~~~~~~~~~~~g~~  282 (319)
                      ++++++++++++|++
T Consensus       153 ~~~~e~l~li~~gkI  167 (168)
T d1piwa2         153 KELNQLLKLVSEKDI  167 (168)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            789999999999987

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.92  E-value=8.1e-25  Score=174.99  Aligned_cols=169  Identities=14%  Similarity=0.207  Sum_probs=134.0

Q ss_pred             CChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEE-C-CCHHHHHHHHHHHHcCCCeEEEecCC----hhHHHHHHHcCC
Q 020928          111 VSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIM-G-SGPIGLVTLLAARAFGAPRIIITDVD----VQRLSIARNLGA  182 (319)
Q Consensus       111 ~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~-G-~g~vG~~ai~la~~~g~~~vv~v~~~----~~~~~~~~~~g~  182 (319)
                      +|+++||+++ .+.|||+++.. +++++|++++|+ | +|++|++++|+||.+|+ ++|++.++    +++.+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            5899999987 78999999965 899999999997 5 69999999999999999 45555433    345667889999


Q ss_pred             CEeeccCC-CCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecc-cCCcccccchHHHhcCcEE
Q 020928          183 DETAKVST-DIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGL-AKTEMTVALTPAAAREVDV  260 (319)
Q Consensus       183 ~~v~~~~~-~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~-~~~~~~~~~~~~~~~~~~i  260 (319)
                      +++++++. ...++...+.+++...+.++|++||++|++ .+..++++|+++|+++.+|. ...+..++...+.+|++++
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i  158 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGK-SSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTS  158 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHH-HHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEE
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcc-hhhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEE
Confidence            99998753 233555566666666678899999999976 78999999999999999985 4455677788888999999


Q ss_pred             EEeecc----------CCCHHHHHHHHHcCC
Q 020928          261 IGIFRY----------RSTWPLCIEFLRSGK  281 (319)
Q Consensus       261 ~~~~~~----------~~~~~~~~~~~~~g~  281 (319)
                      .|++..          .+.+.++++++++|+
T Consensus       159 ~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         159 AGFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             EECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            997543          234666777777764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.91  E-value=1.1e-23  Score=167.43  Aligned_cols=155  Identities=16%  Similarity=0.217  Sum_probs=125.3

Q ss_pred             chhHHHHHHHH-hcCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhH
Q 020928          120 EPLSVGVHACR-RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDT  197 (319)
Q Consensus       120 ~~~~~a~~~l~-~~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  197 (319)
                      .++.|||+++. .+++++|++|||+| +|++|++++|+|+..|+ +|+++++++++.++++++|+++++++.  ++++.+
T Consensus        12 ~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~--~~~~~~   88 (182)
T d1v3va2          12 MPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYK--TVNSLE   88 (182)
T ss_dssp             HHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETT--SCSCHH
T ss_pred             hHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhcccc--cccHHH
Confidence            47889999996 48999999999998 59999999999999999 789998999999999999999998854  345555


Q ss_pred             HHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC-------CcccccchHHHhcCcEEEEeecc----
Q 020928          198 DVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK-------TEMTVALTPAAAREVDVIGIFRY----  266 (319)
Q Consensus       198 ~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~-------~~~~~~~~~~~~~~~~i~~~~~~----  266 (319)
                      .+.+..  .+.++|+|||++|++ .++.++++++++|+++.+|...       ....+....++++++++.|++..    
T Consensus        89 ~~~~~~--~~~Gvd~v~D~vG~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~~~  165 (182)
T d1v3va2          89 EALKKA--SPDGYDCYFDNVGGE-FLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQG  165 (182)
T ss_dssp             HHHHHH--CTTCEEEEEESSCHH-HHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGCCH
T ss_pred             HHHHHh--hcCCCceeEEecCch-hhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEeccCh
Confidence            554443  467899999999965 8999999999999999998421       12234456688999999998654    


Q ss_pred             ---CCCHHHHHHHHHcC
Q 020928          267 ---RSTWPLCIEFLRSG  280 (319)
Q Consensus       267 ---~~~~~~~~~~~~~g  280 (319)
                         .+.++++++++++|
T Consensus       166 ~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         166 DVREKALRDLMKWVLEG  182 (182)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCc
Confidence               23356677777765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4e-24  Score=167.76  Aligned_cols=162  Identities=19%  Similarity=0.209  Sum_probs=130.2

Q ss_pred             CChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC
Q 020928          111 VSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  189 (319)
Q Consensus       111 ~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~  189 (319)
                      .+++++|.+. ...|+|++++++++++|++|+|+|+|++|++++|+||.+|+ ++++++++++++++++++|+++++++.
T Consensus         4 ~~~a~~Apl~Cag~Tay~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~~   82 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSR   82 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEETT
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEECc
Confidence            3556666555 35689999999999999999999999999999999999999 566788999999999999999998864


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCc-ccccchHHHhcCcEEEEeecc-C
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE-MTVALTPAAAREVDVIGIFRY-R  267 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~  267 (319)
                      ..  +.   .    .....++|++||++|++..+...++.++++|+++.+|..... ..+....++.+++++.|+... .
T Consensus        83 ~~--~~---~----~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~~  153 (168)
T d1uufa2          83 NA--DE---M----AAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGI  153 (168)
T ss_dssp             CH--HH---H----HTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCH
T ss_pred             hh--hH---H----HHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeecCH
Confidence            31  11   1    112468999999999887799999999999999999975443 355667788899999999876 6


Q ss_pred             CCHHHHHHHHHcCCC
Q 020928          268 STWPLCIEFLRSGKI  282 (319)
Q Consensus       268 ~~~~~~~~~~~~g~~  282 (319)
                      +++++++++++++++
T Consensus       154 ~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         154 PETQEMLDFCAEHGI  168 (168)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCC
Confidence            678889999887654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=7.3e-24  Score=168.14  Aligned_cols=138  Identities=24%  Similarity=0.275  Sum_probs=116.7

Q ss_pred             CChhhhhccc-hhHHHHHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeec
Q 020928          111 VSLEEGAMCE-PLSVGVHACRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK  187 (319)
Q Consensus       111 ~~~~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~  187 (319)
                      +|+++||+++ .+.|||+++.+ +++++|++|||+| +|++|++++|+|+..|+ +|+++++++++.++++++|++++++
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            5899999886 67899999965 7899999999996 68899999999999999 7999999999999999999999998


Q ss_pred             cCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCC-cccccchHHH
Q 020928          188 VSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT-EMTVALTPAA  254 (319)
Q Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~  254 (319)
                      +.  ++++.+.+++++  .+.++|+++|++|++ .+..++++++++|+++.++.... ...++...+.
T Consensus        80 ~~--~~d~~~~v~~~t--~g~g~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  142 (179)
T d1qora2          80 YR--EEDLVERLKEIT--GGKKVRVVYDSVGRD-TWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILN  142 (179)
T ss_dssp             TT--TSCHHHHHHHHT--TTCCEEEEEECSCGG-GHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHH
T ss_pred             CC--CCCHHHHHHHHh--CCCCeEEEEeCccHH-HHHHHHHHHhcCCeeeecccccCCccccchhhhh
Confidence            64  468888887776  477899999999976 88999999999999999885443 3333433333

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=9.3e-25  Score=172.14  Aligned_cols=131  Identities=22%  Similarity=0.282  Sum_probs=108.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC-ccCCCCccccCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPG-ISCGHCSLCKAGSYNLCP   79 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~   79 (319)
                      |||.++|||++|++.++|...   ...+|+++|||++|+|+++|++|+++++||||...+. .+|++|.+|++|.+++|+
T Consensus        30 Vkv~a~gic~sDl~~~~g~~~---~~~~P~i~GhE~~G~V~~vG~~V~~~~vGdrV~v~~~~~~cg~C~~C~~g~~~~C~  106 (179)
T d1uufa1          30 IEIAYCGVCHSDLHQVRSEWA---GTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCD  106 (179)
T ss_dssp             EEEEEEECCHHHHHHHHCTTS---CCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCT
T ss_pred             EEEEEECCCCCcceeeeeeec---cccccccccccccccchhhccccccCCCCCEEEEcccccccCccccccCcccccCC
Confidence            689999999999999998542   2478999999999999999999999999999976653 489999999999999998


Q ss_pred             CcccccC-------CCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHHhcCCCC
Q 020928           80 EMRFFGS-------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGP  136 (319)
Q Consensus        80 ~~~~~~~-------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~~~~~~~  136 (319)
                      .+.+.+.       ....|+|+||+.+++.+++++|++.  ..++...++.++++++.++.++-
T Consensus       107 ~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~--~~~~~a~~l~~a~~a~~~a~v~~  168 (179)
T d1uufa1         107 HMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVAD--IEMIRADQINEAYERMLRGDVKY  168 (179)
T ss_dssp             TCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCC--EEEECGGGHHHHHHHHHTTCSSS
T ss_pred             CccccccccCCCCCcccccccceEEEechHHEEECCCCC--cChhHhchhHHHHHHHHHhCccc
Confidence            8653211       2346999999999999999999664  33444567888999987776653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=5.5e-24  Score=167.18  Aligned_cols=144  Identities=24%  Similarity=0.409  Sum_probs=119.0

Q ss_pred             CChhhhhccc-hhHHHHHHHHhcCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeecc
Q 020928          111 VSLEEGAMCE-PLSVGVHACRRANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV  188 (319)
Q Consensus       111 ~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~  188 (319)
                      +|++|||+++ ++.|||++++++++++|++|||+| +|++|++++|+||..|+ +|+++++++++.++++++|+++++++
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~~   79 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATY   79 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeeeh
Confidence            5889999886 789999999989999999999998 59999999999999999 78888899999999999999999876


Q ss_pred             CCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC-CcccccchHHHhcCcEEEEeecc
Q 020928          189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK-TEMTVALTPAAAREVDVIGIFRY  266 (319)
Q Consensus       189 ~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~  266 (319)
                      .    +   ....++  .+.++|+|||++| + .+..++++++++|+++.+|... ...+++...++.|++++.|++..
T Consensus        80 ~----~---~~~~~~--~~~g~D~v~d~~G-~-~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~  147 (171)
T d1iz0a2          80 A----E---VPERAK--AWGGLDLVLEVRG-K-EVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLT  147 (171)
T ss_dssp             G----G---HHHHHH--HTTSEEEEEECSC-T-THHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHH
T ss_pred             h----h---hhhhhh--ccccccccccccc-h-hHHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCc
Confidence            3    2   222233  3678999999988 3 6788999999999999999653 44467778888999999998754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.90  E-value=1.3e-22  Score=160.37  Aligned_cols=167  Identities=22%  Similarity=0.276  Sum_probs=132.4

Q ss_pred             Chhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC
Q 020928          112 SLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  189 (319)
Q Consensus       112 ~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~  189 (319)
                      ++++||+++ .+.|+|+++ +.+++++|++|||+|+|++|++++++++..|..+|++++++++|+++++++|+++++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            578899887 578999998 459999999999999999999999999999988999999999999999999999998864


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEec-ccCCcc-cccchHHHhcCcEEEEeecc-
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG-LAKTEM-TVALTPAAAREVDVIGIFRY-  266 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g-~~~~~~-~~~~~~~~~~~~~i~~~~~~-  266 (319)
                      +.+.......+ .  +.+.++|++||++|.+.....++..++.+|+.+.++ ...... .+.......+++++.|++.. 
T Consensus        82 ~~~~~~~~~~~-~--~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~  158 (176)
T d2jhfa2          82 DYKKPIQEVLT-E--MSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGG  158 (176)
T ss_dssp             GCSSCHHHHHH-H--HTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGG
T ss_pred             CchhHHHHHHH-H--HhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeC
Confidence            43333333322 2  246799999999999988888999998875555444 433333 33444566799999998754 


Q ss_pred             ---CCCHHHHHHHHHcCC
Q 020928          267 ---RSTWPLCIEFLRSGK  281 (319)
Q Consensus       267 ---~~~~~~~~~~~~~g~  281 (319)
                         .++++++++++.+||
T Consensus       159 ~~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         159 FKSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHCcC
Confidence               446778888888875

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.90  E-value=5.7e-25  Score=172.92  Aligned_cols=116  Identities=23%  Similarity=0.192  Sum_probs=100.5

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++.+++..   ...++|+++|||++|+|+++|+++++|++||||+..+..+|++|.+|..|.+.+|..
T Consensus        29 Ikv~a~gic~sD~~~~~~~~---~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGdrV~v~~~~~cg~c~~C~~g~~~~c~~  105 (177)
T d1jqba1          29 VRPLAVSPCTSDIHTVFEGA---LGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNG  105 (177)
T ss_dssp             EEEEEECCCHHHHHHHHHCT---TCCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCCCCSSSHHHHTTCGGGTTS
T ss_pred             EEEEEEecCCCcccccccCC---CCCCCCccCcceeeEEeeecccccceecCCCcEEEeeeeccccccchhhhhhccccc
Confidence            68999999999998887543   345789999999999999999999999999999999999999999999999999987


Q ss_pred             ccc--ccCCCCCCcceeEEeecC--CceEeCCCCCChhhhhcc
Q 020928           81 MRF--FGSPPTNGSLAHKVVHPA--KLCYKLPDNVSLEEGAMC  119 (319)
Q Consensus        81 ~~~--~~~~~~~g~~~e~~~~~~--~~~~~iP~~~~~~~aa~~  119 (319)
                      ...  ..+...+|+|+||++++.  ..++++|+++++++++..
T Consensus       106 ~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~  148 (177)
T d1jqba1         106 MLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTH  148 (177)
T ss_dssp             TTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEE
T ss_pred             ccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHH
Confidence            643  233456899999999986  368999999999887644

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.90  E-value=1.4e-22  Score=160.02  Aligned_cols=167  Identities=22%  Similarity=0.305  Sum_probs=135.5

Q ss_pred             Chhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC
Q 020928          112 SLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  189 (319)
Q Consensus       112 ~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~  189 (319)
                      ++++||++. .+.|+|+++ +.+++++|++|+|+|+|++|+.++++++..|..+|++++++++|+++++++|+++++++.
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            578899887 678999998 568999999999999999999999999999998999999999999999999999999875


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCE-EEEecccCCcccccchHHHhcCcEEEEeecc--
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGK-VCLIGLAKTEMTVALTPAAAREVDVIGIFRY--  266 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~-~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--  266 (319)
                      ..+ +....+....  .+.++|++||++|+......+..+++++|. ++..+........+....+.+++++.|++..  
T Consensus        82 ~~~-~~~~~~~~~~--~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G~~  158 (175)
T d1cdoa2          82 DHS-EPISQVLSKM--TNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGF  158 (175)
T ss_dssp             GCS-SCHHHHHHHH--HTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGGGC
T ss_pred             Ccc-hhHHHHHHhh--ccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEeCC
Confidence            433 2333333332  467999999999998788888888877754 4455555555566677778889999998754  


Q ss_pred             --CCCHHHHHHHHHcCC
Q 020928          267 --RSTWPLCIEFLRSGK  281 (319)
Q Consensus       267 --~~~~~~~~~~~~~g~  281 (319)
                        .++++++++++++|+
T Consensus       159 ~~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         159 KGKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHcCC
Confidence              456888999998875

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.90  E-value=3.9e-25  Score=177.43  Aligned_cols=137  Identities=18%  Similarity=0.346  Sum_probs=111.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|+++++|..    +.++|.++|||++|+|+++|+++++|++||||+..+..+|+.|.+|.+|.+++|+.
T Consensus        38 Vkv~a~gICgsDlh~~~G~~----~~~~P~i~GHE~~G~Vv~~G~~v~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~  113 (198)
T d1p0fa1          38 IKILASGICGSDSSVLKEII----PSKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEK  113 (198)
T ss_dssp             EEEEEEECCHHHHHHHTTSS----CCCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTT
T ss_pred             EEEEEEEEecccceeeeecc----ccccccccceeeeeeeeecCcccccCcCCCEEEEEeeccccccccccccccccchh
Confidence            68999999999999998753    45789999999999999999999999999999999999999999999999999987


Q ss_pred             cccccCC--------------------CCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCe
Q 020928           81 MRFFGSP--------------------PTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETN  139 (319)
Q Consensus        81 ~~~~~~~--------------------~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~  139 (319)
                      ..+.+..                    ...|+|+||+.+++..++++|++++.+.++... ...         .+.++++
T Consensus       114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip~~~~~~~~~~~~~~~~---------~v~~~~~  184 (198)
T d1p0fa1         114 NDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLD---------QINKAFE  184 (198)
T ss_dssp             CSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECTTSCGGGGEEEEECGG---------GHHHHHH
T ss_pred             hhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECCCCCCHHHHHHhhcchh---------hcCCCCE
Confidence            6543211                    124899999999999999999999977665332 221         2233345


Q ss_pred             EEEECCCHHHH
Q 020928          140 VMIMGSGPIGL  150 (319)
Q Consensus       140 vlI~G~g~vG~  150 (319)
                      |||.|+|++|+
T Consensus       185 vlv~G~G~iGl  195 (198)
T d1p0fa1         185 LLSSGQGVRSI  195 (198)
T ss_dssp             HTTTSSCSEEE
T ss_pred             EEEECCCcceE
Confidence            77778877764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.90  E-value=1.7e-22  Score=159.15  Aligned_cols=164  Identities=20%  Similarity=0.294  Sum_probs=129.8

Q ss_pred             Chhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC
Q 020928          112 SLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS  189 (319)
Q Consensus       112 ~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~  189 (319)
                      ++++||.+. .+.|+|+++ +.+++++|++|+|+|+|++|++++|+++..|+.+|++++.+++|+++++++|+++++++.
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~   82 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK   82 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence            588999997 678999998 558999999999999999999999999999988999999999999999999999999865


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCC-CEEEEecccCCcccccc-hHHHhcCcEEEEeecc-
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPG-GKVCLIGLAKTEMTVAL-TPAAAREVDVIGIFRY-  266 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~-  266 (319)
                      .. ++....+.+++  .+.++|++||++|++.........+..+ |+++.+|.+.....+.. ....+++.+++|++.. 
T Consensus        83 ~~-~~~~~~~~~~~--~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~  159 (176)
T d1d1ta2          83 DS-TKPISEVLSEM--TGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGG  159 (176)
T ss_dssp             GC-SSCHHHHHHHH--HTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGG
T ss_pred             cc-chHHHHHHHHh--ccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHhCCCEEEEEEEeC
Confidence            32 22233333333  4789999999999987788877777655 99999997665544433 3355678899998754 


Q ss_pred             ---CCCHHHHHHHHH
Q 020928          267 ---RSTWPLCIEFLR  278 (319)
Q Consensus       267 ---~~~~~~~~~~~~  278 (319)
                         .+++.++++++.
T Consensus       160 ~~~~~dip~li~~~~  174 (176)
T d1d1ta2         160 LKSRDDVPKLVTEFL  174 (176)
T ss_dssp             CCHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHh
Confidence               344555555553

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=2.9e-22  Score=160.25  Aligned_cols=163  Identities=23%  Similarity=0.324  Sum_probs=129.6

Q ss_pred             hhhcc-chhHHHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCc
Q 020928          115 EGAMC-EPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIE  193 (319)
Q Consensus       115 ~aa~~-~~~~~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~  193 (319)
                      +.+.+ .+++|||++++++++++|++|||+|+|++|++++++|+..|+.+|++++.+++|+++++++|+++++++  ..+
T Consensus         3 d~~~l~d~~~ta~~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~--~~~   80 (195)
T d1kola2           3 DLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLS--LDT   80 (195)
T ss_dssp             HHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETT--SSS
T ss_pred             hHHhcccHHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeC--CCc
Confidence            34444 689999999999999999999999999999999999999999999999999999999999999998874  345


Q ss_pred             chhHHHHHhhhhcCCCccEEEEccCC---------------hHHHHHHHHhhcCCCEEEEecccCCcc------------
Q 020928          194 DVDTDVGKIQNAMGSGIDVSFDCVGF---------------DKTMSTALNATRPGGKVCLIGLAKTEM------------  246 (319)
Q Consensus       194 ~~~~~i~~~~~~~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~~~~~------------  246 (319)
                      ++.+.+.+++  .+.++|++||++|.               .+.++.++++++++|+++.+|.+..+.            
T Consensus        81 ~~~~~i~~~t--~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~  158 (195)
T d1kola2          81 PLHEQIAALL--GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGS  158 (195)
T ss_dssp             CHHHHHHHHH--SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTC
T ss_pred             CHHHHHHHHh--CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCc
Confidence            7777777765  47789999999994               358999999999999999999754332            


Q ss_pred             -cccchHHHhcCcEEEEeecc-CCCHHHHHHHHHcCC
Q 020928          247 -TVALTPAAAREVDVIGIFRY-RSTWPLCIEFLRSGK  281 (319)
Q Consensus       247 -~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~  281 (319)
                       .++...++.|++.+...... .+.++++++++.+++
T Consensus       159 ~~~~~~~~~~k~~~i~~g~~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         159 LSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             CCCCHHHHHHTTCEEEESSCCHHHHHHHHHHHHHTTS
T ss_pred             eeeeHHHHHhhcceeccCCCchHHHHHHHHHHHHcCC
Confidence             22333455677776542221 334667778777654

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.89  E-value=1.1e-23  Score=169.26  Aligned_cols=137  Identities=19%  Similarity=0.285  Sum_probs=112.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||.++|||++|++.++|..    +.++|+++|||++|+|+++|++++++++||||+..+..+|+.|..|..|.+.+|+.
T Consensus        38 VkV~a~giC~sDl~~~~G~~----~~~~P~i~GHE~~G~Vv~vG~~v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~  113 (198)
T d2jhfa1          38 IKMVATGICRSDDHVVSGTL----VTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLK  113 (198)
T ss_dssp             EEEEEEECCHHHHHHHHTSS----CCCSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTT
T ss_pred             EEEEEEecccccceeecCCc----ccccceecccceeEEEEecCccccCcCCCCEEEEeeeecccccccccCCccceecc
Confidence            68999999999999998753    45789999999999999999999999999999999999999999999999999987


Q ss_pred             cccccC--------------------CCCCCcceeEEeecCCceEeCCCCCChhhhhcc-chhHHHHHHHHhcCCCCCCe
Q 020928           81 MRFFGS--------------------PPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMC-EPLSVGVHACRRANVGPETN  139 (319)
Q Consensus        81 ~~~~~~--------------------~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~  139 (319)
                      ......                    ....|+|+||+++++..++++|+.++++.++.. .++.......  ..+++|++
T Consensus       114 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~p~~~~~e~l~~~~~~~~~v~~g~--~~l~~G~~  191 (198)
T d2jhfa1         114 NDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEKINEGF--DLLRSGES  191 (198)
T ss_dssp             CSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHH--HHHHTTCC
T ss_pred             ccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEECCCCCCHHHHHHHHHHHHhhhhCC--ceeeCCCE
Confidence            553211                    112489999999999999999999988766543 3333322222  33678899


Q ss_pred             EEEE
Q 020928          140 VMIM  143 (319)
Q Consensus       140 vlI~  143 (319)
                      |+|+
T Consensus       192 VaVi  195 (198)
T d2jhfa1         192 IRTI  195 (198)
T ss_dssp             SEEE
T ss_pred             EEEE
Confidence            8875

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.3e-23  Score=158.82  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=99.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|++.++|...  ....+|.++|||++|+|+++|+++++|++||||++.                     
T Consensus        35 Vkv~a~~i~~~D~~~~~g~~~--~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~---------------------   91 (150)
T d1yb5a1          35 IKVHACGVNPVETYIRSGTYS--RKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTS---------------------   91 (150)
T ss_dssp             EEEEEEECCHHHHHHHHTCSS--CCCCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEES---------------------
T ss_pred             EEEEEecCcccchhhhcCCcC--ccccccccCccceeeeeEeecceeeccccCcccccc---------------------
Confidence            689999999999999987543  234789999999999999999999999999999864                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEE
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIM  143 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~  143 (319)
                            ...+|+|+||++++++.++++|+++++++||+++ ...++|+++ ..++.+.|+++||.
T Consensus        92 ------~~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          92 ------STISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             ------CCSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             ------ccccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence                  2347999999999999999999999999999886 667888877 45889999999873

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=8.2e-23  Score=156.25  Aligned_cols=112  Identities=19%  Similarity=0.240  Sum_probs=96.1

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|...   ..++|.++|||++|+|+++|+++++|++||||+..                     
T Consensus        32 Vkv~a~~in~~D~~~~~G~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~---------------------   87 (147)
T d1qora1          32 VENKAIGINFIDTYIRSGLYP---PPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYA---------------------   87 (147)
T ss_dssp             EEEEEEECCHHHHHHHHTSSC---CSSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEES---------------------
T ss_pred             EEEEEecccceeeeeecCCCC---CCcceeeeccccccceeeeeeecccccccceeeee---------------------
Confidence            689999999999999988642   34689999999999999999999999999999752                     


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhc--cc-hhHHHHHHHHhcCCCCCCeEEE
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAM--CE-PLSVGVHACRRANVGPETNVMI  142 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~--~~-~~~~a~~~l~~~~~~~~~~vlI  142 (319)
                            ....|+|+||+.++.+.++++|+++++++|++  ++ ..+++++++.+.++++|++|||
T Consensus        88 ------~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~~~~~~G~~VLI  146 (147)
T d1qora1          88 ------QSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLI  146 (147)
T ss_dssp             ------CCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEE
T ss_pred             ------ccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence                  22469999999999999999999998876543  33 5678888887788999999998

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=5.6e-22  Score=157.93  Aligned_cols=165  Identities=18%  Similarity=0.255  Sum_probs=121.3

Q ss_pred             CChhhhhccchhHHHHHHHHh-cCCCCC--CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH-HHHHHHcCCCEe
Q 020928          111 VSLEEGAMCEPLSVGVHACRR-ANVGPE--TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARNLGADET  185 (319)
Q Consensus       111 ~~~~~aa~~~~~~~a~~~l~~-~~~~~~--~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~-~~~~~~~g~~~v  185 (319)
                      +|+.+.|+-.+..|||+++.. +++++|  ++|||+| +|++|++++|+||..|+++|+++++++++ .++.+++|++.+
T Consensus         2 ~~~~~galg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~v   81 (187)
T d1vj1a2           2 LSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAA   81 (187)
T ss_dssp             GGGGGTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEE
T ss_pred             ccHHHHHhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEE
Confidence            456666655688999999954 788887  8899998 69999999999999999878877766655 445667999999


Q ss_pred             eccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCC---cc--ccc-----chHHHh
Q 020928          186 AKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT---EM--TVA-----LTPAAA  255 (319)
Q Consensus       186 ~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~--~~~-----~~~~~~  255 (319)
                      +++..  +++.+.++++.   +.++|+|||++|++ .++..+++++++|+++.+|....   ..  ...     ...+..
T Consensus        82 i~~~~--~~~~~~~~~~~---~~GvDvv~D~vGg~-~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~  155 (187)
T d1vj1a2          82 VNYKT--GNVAEQLREAC---PGGVDVYFDNVGGD-ISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKE  155 (187)
T ss_dssp             EETTS--SCHHHHHHHHC---TTCEEEEEESSCHH-HHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHH
T ss_pred             eeccc--hhHHHHHHHHh---ccCceEEEecCCch-hHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHh
Confidence            99753  46666666654   57899999999975 89999999999999999985221   11  111     122456


Q ss_pred             cCcEEEEeecc------CCCHHHHHHHHHcCC
Q 020928          256 REVDVIGIFRY------RSTWPLCIEFLRSGK  281 (319)
Q Consensus       256 ~~~~i~~~~~~------~~~~~~~~~~~~~g~  281 (319)
                      +++++.++...      .+.++++.+++++|+
T Consensus       156 k~i~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         156 RNITRERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             TTCEEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             cceEEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            88888876543      223566777777765

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.2e-20  Score=147.96  Aligned_cols=146  Identities=15%  Similarity=0.192  Sum_probs=117.7

Q ss_pred             CChhhhhccc-hhHHHHHHH---Hh-cCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCE
Q 020928          111 VSLEEGAMCE-PLSVGVHAC---RR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE  184 (319)
Q Consensus       111 ~~~~~aa~~~-~~~~a~~~l---~~-~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~  184 (319)
                      +|+.+||.++ +..|||+++   .. ...+++++|||+| +|++|++++|+||.+|+ +|+++++++++.++++++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            5788999886 567898765   33 4455667999997 69999999999999999 6888889999999999999999


Q ss_pred             eeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc-CCcccccchHHHhcCcEEEEe
Q 020928          185 TAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA-KTEMTVALTPAAAREVDVIGI  263 (319)
Q Consensus       185 v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~~~~~~~~~i~~~  263 (319)
                      +++++..  ++.+.   +   .....|.++|++|++ .+...+++++++|+++.+|.. ....+.+...++.|++++.|+
T Consensus        80 vi~~~~~--~~~~~---l---~~~~~~~vvD~Vgg~-~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~  150 (177)
T d1o89a2          80 VLPRDEF--AESRP---L---EKQVWAGAIDTVGDK-VLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGV  150 (177)
T ss_dssp             EEEGGGS--SSCCS---S---CCCCEEEEEESSCHH-HHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEEC
T ss_pred             ccccccH--HHHHH---H---HhhcCCeeEEEcchH-HHHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEE
Confidence            9987532  22221   2   234579999999976 899999999999999999964 445567788899999999997


Q ss_pred             ecc
Q 020928          264 FRY  266 (319)
Q Consensus       264 ~~~  266 (319)
                      ...
T Consensus       151 ~~~  153 (177)
T d1o89a2         151 DSV  153 (177)
T ss_dssp             CSS
T ss_pred             ecc
Confidence            543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=2.5e-20  Score=144.73  Aligned_cols=133  Identities=20%  Similarity=0.293  Sum_probs=108.8

Q ss_pred             HHHHHh-cCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhh
Q 020928          126 VHACRR-ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       126 ~~~l~~-~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      +++|.+ ...+++++|||+| +|++|.+++|+||.+|+ +|+++.+++++.++++++|++.+++++.   ...+.   +.
T Consensus        12 ~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~---~~~~~---~~   84 (167)
T d1tt7a2          12 VHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED---VYDGT---LK   84 (167)
T ss_dssp             HHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH---HCSSC---CC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc---hhchh---hh
Confidence            355544 6677888999998 69999999999999999 6888889999999999999999987631   11111   22


Q ss_pred             hhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc-CCcccccchHHHhcCcEEEEeecc
Q 020928          204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA-KTEMTVALTPAAAREVDVIGIFRY  266 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~~~~~~~~~i~~~~~~  266 (319)
                      ...+.++|+|||++|++ .++.++++|+++|+++.+|.. +...+++...++.+++++.|....
T Consensus        85 ~~~~~gvd~vid~vgg~-~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~  147 (167)
T d1tt7a2          85 ALSKQQWQGAVDPVGGK-QLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSV  147 (167)
T ss_dssp             SSCCCCEEEEEESCCTH-HHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSS
T ss_pred             cccCCCceEEEecCcHH-HHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEecC
Confidence            23467899999999987 899999999999999999964 455678889999999999997654

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.80  E-value=2.6e-20  Score=142.92  Aligned_cols=116  Identities=12%  Similarity=0.069  Sum_probs=92.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+..+.|..  ......|+++|+|++|+|++  .++.+|++||+|+.....                  
T Consensus        35 VkV~a~gin~~D~~~~~g~~--~~~~~~p~v~g~e~~G~v~~--~~~~~~~~g~~v~~~~~~------------------   92 (152)
T d1xa0a1          35 VRVHYSSVNYKDGLASIPDG--KIVKTYPFVPGIDLAGVVVS--SQHPRFREGDEVIATGYE------------------   92 (152)
T ss_dssp             EEEEEEECCHHHHHHTSGGG--SSCCSSSBCCCSEEEEEEEE--CCSSSCCTTCEEEEESTT------------------
T ss_pred             EEEEEeCCChHHHHHHhhcc--cccccccceeeeeeeeeeec--cCCCccccCCEEEEecCc------------------
Confidence            68999999999999888753  33457899999999999998  556789999999864210                  


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHH-HhcCCCCCCeEEEEC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHAC-RRANVGPETNVMIMG  144 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlI~G  144 (319)
                          .....+|+|+||+.++++.++++|+++++ +||+++ ...|||.++ .+++++ |++|||.|
T Consensus        93 ----~~~~~~G~~aEy~~v~~~~~~~iP~~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1          93 ----IGVTHFGGYSEYARLHGEWLVPLPKGLER-IAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             ----BTTTBCCSSBSEEEECGGGCEECCTTHHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             ----cccccCCCcceeeeehhhccccCCCCCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence                01234799999999999999999999985 566664 556777776 557776 99999975

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=9e-20  Score=135.60  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=85.0

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+++|||++|+++++|...  ....+|+++|||++|+|           +||||++..                    
T Consensus        30 Vkv~a~gin~~D~~~~~G~~~--~~~~~P~v~G~E~~G~V-----------vGd~V~~~~--------------------   76 (131)
T d1iz0a1          30 LRVEAVGLNFADHLMRLGAYL--TRLHPPFIPGMEVVGVV-----------EGRRYAALV--------------------   76 (131)
T ss_dssp             EEEEEEEECHHHHHHHHTCSS--SCCCSSBCCCCEEEEEE-----------TTEEEEEEC--------------------
T ss_pred             EEEEEEecccccccccccccc--ccccceeEeeeeeEEee-----------ccceEEEEe--------------------
Confidence            689999999999999988542  23478999999999999           399998752                    


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccc-hhHHHHHHHHhcCCCCCCeEEE
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCE-PLSVGVHACRRANVGPETNVMI  142 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlI  142 (319)
                              .+|+|+||+.++++.++++|+++++++||.++ .+.|||+++.+ +-+.|++||+
T Consensus        77 --------~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~-~g~~g~tvl~  130 (131)
T d1iz0a1          77 --------PQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLD-RGHTGKVVVR  130 (131)
T ss_dssp             --------SSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTC-TTCCBEEEEE
T ss_pred             --------ccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHh-cccCCCEEEE
Confidence                    36999999999999999999999999999885 77899999854 2356899886

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=4.5e-18  Score=128.92  Aligned_cols=102  Identities=15%  Similarity=0.124  Sum_probs=82.2

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+|+|||++|+..+.|..  .....+|+++|+|++|+|+++|.  ..|++||+|+.....                  
T Consensus        32 VkV~a~gin~~D~~~~~G~~--~~~~~~p~v~G~e~~G~V~~~~~--~~~~~g~~v~~~~~~------------------   89 (146)
T d1o89a1          32 VDVHWSSLNYKDALAITGKG--KIIRNFPMIPGIDFAGTVRTSED--PRFHAGQEVLLTGWG------------------   89 (146)
T ss_dssp             EEEEEEECCHHHHHHHHTCS--SCCCSSSBCCCSEEEEEEEEECS--TTCCTTCEEEEECTT------------------
T ss_pred             EEEeeccCccceeeEEEeec--ccccccceeccccccccceeecc--CCccceeeEEeeccc------------------
Confidence            68999999999999888753  22357899999999999999876  479999999864210                  


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccch-hHHHHHH
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHA  128 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~-~~~a~~~  128 (319)
                          -+...+|+|+||+.++++.++++|+++|+++||+++. ..||+..
T Consensus        90 ----~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~  134 (146)
T d1o89a1          90 ----VGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAII  134 (146)
T ss_dssp             ----BTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHH
T ss_pred             ----ceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                0123479999999999999999999999999999874 3455433

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.71  E-value=2.6e-21  Score=152.64  Aligned_cols=127  Identities=16%  Similarity=0.073  Sum_probs=102.9

Q ss_pred             CCcceEeeccCCccccccccccc-------cccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCAN-------FIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAG   73 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~-------~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~   73 (319)
                      |||+++|||++|+++++|.....       .....|.++|+|++|+|+++|.++.+++.||||....             
T Consensus        38 Vkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~g~V~~~~~~~~~~~~g~~v~~~~-------------  104 (175)
T d1gu7a1          38 VKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSH-------------  104 (175)
T ss_dssp             EEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEEEEEEECTTCCSCCTTCEEEESS-------------
T ss_pred             EEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccccccccccccccccccccceeccc-------------
Confidence            68999999999999998764222       1236789999999999999999999999999998642             


Q ss_pred             CCCCCCCcccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccchhHHHHHHHH--hcCCCCCCeEEEEC-C-CHHH
Q 020928           74 SYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACR--RANVGPETNVMIMG-S-GPIG  149 (319)
Q Consensus        74 ~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~~~~a~~~l~--~~~~~~~~~vlI~G-~-g~vG  149 (319)
                                    ...|+|+||+.++++.++++|++++.+.|+.+ ...|||+++.  ..++++|++|||.| + |++|
T Consensus       105 --------------~~~g~~aey~~v~~~~~~~iP~~~~~~~a~~~-~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG  169 (175)
T d1gu7a1         105 --------------VNFGTWRTHALGNDDDFIKLPNPAQSKANGKP-NGLTDAKSIETLYDGTKPLHELYQDGVANSKDG  169 (175)
T ss_dssp             --------------SCCCCSBSEEEEEGGGEEEECCHHHHHHTTCS-CCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGS
T ss_pred             --------------cccccccceeeehhhhccCCCccchhhhhccc-hHHHHHHHHHHHhcCCCCCCEEEEECccchhhh
Confidence                          24689999999999999999998875555543 4456777764  36899999999986 4 7799


Q ss_pred             HHHHHH
Q 020928          150 LVTLLA  155 (319)
Q Consensus       150 ~~ai~l  155 (319)
                      +++||+
T Consensus       170 ~~~iQ~  175 (175)
T d1gu7a1         170 KQLITY  175 (175)
T ss_dssp             CEEEEC
T ss_pred             heEEeC
Confidence            988763

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.71  E-value=1.8e-20  Score=145.40  Aligned_cols=119  Identities=18%  Similarity=0.226  Sum_probs=92.6

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      |||+|+|||++|++.+.|..  ......|.++|+|++|+|++  +.+.++++||+|+.....                  
T Consensus        35 VkV~a~gin~~D~~~~~g~~--~~~~~~~~~~g~e~~G~v~~--~~~~~~~~g~~v~~~~~~------------------   92 (162)
T d1tt7a1          35 IKVAYSGINYKDGLAGKAGG--NIVREYPLILGIDAAGTVVS--SNDPRFAEGDEVIATSYE------------------   92 (162)
T ss_dssp             EEECCEEECHHHHHHTSTTC--TTCSSCSEECCSEEEEEEEE--CSSTTCCTTCEEEEESTT------------------
T ss_pred             EEEEEecccchhhheeeecc--cccccceeeeeeeccccccc--ccccccccceeeEeeecc------------------
Confidence            68999999999999998854  23357789999999999998  456789999999864211                  


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhhhhccch-hHHHHHHHHhcCCCCCCeEEEECC
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEP-LSVGVHACRRANVGPETNVMIMGS  145 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~aa~~~~-~~~a~~~l~~~~~~~~~~vlI~G~  145 (319)
                          -+...+|+|+||+.++++.++++|+++|+++||.++. ..|||+++...+...+++|||.|+
T Consensus        93 ----~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~~~~~~~~Vli~ga  154 (162)
T d1tt7a1          93 ----LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLEETPGALKDILQNRI  154 (162)
T ss_dssp             ----BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECSTTHHHHHHHTTTTCC
T ss_pred             ----ceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence                0123579999999999999999999999999998864 556776654333444566777763

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=5.4e-14  Score=92.67  Aligned_cols=71  Identities=11%  Similarity=0.192  Sum_probs=61.7

Q ss_pred             CChhhhhccc-hhHHHHHHHH----hcCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC
Q 020928          111 VSLEEGAMCE-PLSVGVHACR----RANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA  182 (319)
Q Consensus       111 ~~~~~aa~~~-~~~~a~~~l~----~~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~  182 (319)
                      +|++||+.++ ...|||+++.    ....+++++|||+| +|++|.+++|+++.+|+ +|+++.+++++.++++++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            5789999887 5678887763    36789999999997 69999999999999999 68888899999999999985

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.95  E-value=1.5e-09  Score=80.99  Aligned_cols=101  Identities=10%  Similarity=-0.029  Sum_probs=70.8

Q ss_pred             CCcceEeeccCCccccccccccccccCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCccCCCCccccCCCCCCCCC
Q 020928            1 MPKAVTAYCMQNVVYDQTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPE   80 (319)
Q Consensus         1 v~v~~~~i~~~D~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~   80 (319)
                      ||++|.++++.......       +.+...++..+++|+|++  ++.++|++||+|.+                      
T Consensus        39 vk~~~~svDp~~R~~~~-------~~~~g~~~~g~~vg~Vv~--S~~~~f~~GD~V~g----------------------   87 (147)
T d1v3va1          39 LEALFLSVDPYMRIASK-------RLKEGAVMMGQQVARVVE--SKNSAFPAGSIVLA----------------------   87 (147)
T ss_dssp             EEEEEEECCTHHHHHGG-------GSCTTSBCCCCEEEEEEE--ESCTTSCTTCEEEE----------------------
T ss_pred             EEEEEEeEccccccccc-------ccccCCccccceEEEEEE--eCCCcccCCCEEEE----------------------
Confidence            57889999875433221       234455566789999988  56688999999986                      


Q ss_pred             cccccCCCCCCcceeEEeecCCceEeCCCCCChhh-----hhcc-chhHHHHH-HHHhcCCCCCCeEEE
Q 020928           81 MRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEE-----GAMC-EPLSVGVH-ACRRANVGPETNVMI  142 (319)
Q Consensus        81 ~~~~~~~~~~g~~~e~~~~~~~~~~~iP~~~~~~~-----aa~~-~~~~~a~~-~l~~~~~~~~~~vlI  142 (319)
                               .++|+||.+.+...+.++|++++...     .+++ .+..|||+ .+ ....+.|++|++
T Consensus        88 ---------~~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl-~~~~k~Getvv~  146 (147)
T d1v3va1          88 ---------QSGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEM-LNGANLGKAVVT  146 (147)
T ss_dssp             ---------CCCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHH-HTTCCSSEEEEE
T ss_pred             ---------ccCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHh-hCCCCCCCEEEe
Confidence                     46899999999999999997754332     2333 34555443 44 344577999986

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.21  E-value=1.7e-06  Score=64.71  Aligned_cols=97  Identities=20%  Similarity=0.305  Sum_probs=72.4

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      ++-+|+|+|+|.+|+.|++.|+.+|+ .|.+.|.+.++++.+++.....+.......    +.+.+..    ...|+||.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~----~~l~~~~----~~aDivI~  101 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS----AEIETAV----AEADLLIG  101 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH----HHHHHHH----HTCSEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhhh----hhHHHhh----ccCcEEEE
Confidence            56899999999999999999999999 899999999999988885432221111111    1222222    25899999


Q ss_pred             ccCChH------HHHHHHHhhcCCCEEEEecc
Q 020928          216 CVGFDK------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       216 ~~g~~~------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ++--+.      ....+++.|++++.++++..
T Consensus       102 aalipG~~aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         102 AVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             eeecCCcccCeeecHHHHhhcCCCcEEEEeec
Confidence            886542      35788899999999999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.08  E-value=8e-06  Score=61.81  Aligned_cols=104  Identities=17%  Similarity=0.308  Sum_probs=73.6

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCC--------------cchh-HHHH
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDI--------------EDVD-TDVG  200 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~--------------~~~~-~~i~  200 (319)
                      ++-+|+|+|+|.+|+.|+..|+.+|+ .|.+.|.+.++++.+++++...+.......              +++. .+-.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            45799999999999999999999999 899999999999999998865542110000              0110 1111


Q ss_pred             HhhhhcCCCccEEEEccCChH------HHHHHHHhhcCCCEEEEecc
Q 020928          201 KIQNAMGSGIDVSFDCVGFDK------TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       201 ~~~~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .+.+. =...|+||-++-.+.      ..+.+++.|++++.++++..
T Consensus       107 ~l~~~-l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         107 AVLKE-LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHH-HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHH-HHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence            12221 136899998876542      35788899999999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.99  E-value=6.9e-06  Score=64.71  Aligned_cols=104  Identities=17%  Similarity=0.220  Sum_probs=74.0

Q ss_pred             HHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEeeccCCCCcchhHHHHH
Q 020928          126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       126 ~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~i~~  201 (319)
                      ...++..+++++++||.+|+|+ |..++.+|+..|. .|++++..++-.+.+    +++|.+.+.....   |....   
T Consensus        68 a~ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g---d~~~g---  139 (215)
T d1jg1a_          68 AIMLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG---DGSKG---  139 (215)
T ss_dssp             HHHHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CGGGC---
T ss_pred             HHHHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEEC---ccccC---
Confidence            3456778999999999999887 8888888988885 688998887654444    4567655443222   11110   


Q ss_pred             hhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +  .....||.|+-+.+.+.....+++.|+++|+++..
T Consensus       140 ~--~~~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         140 F--PPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             C--GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             C--cccCcceeEEeecccccCCHHHHHhcCCCCEEEEE
Confidence            1  12467999987777665667888999999999875

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=1.4e-05  Score=62.98  Aligned_cols=104  Identities=22%  Similarity=0.285  Sum_probs=72.7

Q ss_pred             HHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHH
Q 020928          127 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       127 ~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~  201 (319)
                      ..++..++++|++||-+|+|. |..++.+|+..|.+ .|++++.+++..+.+++    .+...+.....   +....   
T Consensus        66 ~~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~---d~~~~---  138 (213)
T d1dl5a1          66 LFMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG---DGYYG---  138 (213)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CGGGC---
T ss_pred             HHHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC---chHHc---
Confidence            356778999999999999887 88888899987643 79999999987777665    33333222111   11110   


Q ss_pred             hhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +  ...+.||.|+.+.+-....+.+++.|+++|+++..
T Consensus       139 ~--~~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         139 V--PEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             C--GGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             c--ccccchhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            1  11346999998776554557788999999999874

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.94  E-value=7.7e-05  Score=60.07  Aligned_cols=103  Identities=19%  Similarity=0.236  Sum_probs=73.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +|+++||+| ++++|.+..+.+...|+ +|+..++++++.+.+++.+...+ ..+ .+.++..+.+.++.+.. +++|++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~-G~iDiL   80 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFF-QVDLEDERERVRFVEEAAYAL-GRVDVL   80 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEE-ECCTTCHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEE-EEeCCCHHHHHHHHHHHHHhc-CCCCeE
Confidence            688999998 69999999999999999 78889999888888888875443 222 22334444444444433 479999


Q ss_pred             EEccCCh-------------------------HHHHHHHHhhcC--CCEEEEecc
Q 020928          214 FDCVGFD-------------------------KTMSTALNATRP--GGKVCLIGL  241 (319)
Q Consensus       214 ~d~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~  241 (319)
                      +++.|..                         ...+.+++.|..  +|+++.++.
T Consensus        81 VnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS  135 (248)
T d2d1ya1          81 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVAS  135 (248)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             EEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccc
Confidence            9998863                         134556667743  689998874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.89  E-value=2.5e-05  Score=63.62  Aligned_cols=108  Identities=17%  Similarity=0.228  Sum_probs=75.6

Q ss_pred             HHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHH
Q 020928          124 VGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTD  198 (319)
Q Consensus       124 ~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~  198 (319)
                      -+.+.+..++++||++||=.|+|+ |.+++.+|+..|.. +|++++.+++..+.+++    ++....+....  .+... 
T Consensus        91 d~~~Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~--~d~~~-  166 (266)
T d1o54a_          91 DSSFIAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV--RDISE-  166 (266)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC--CCGGG-
T ss_pred             HHHHHHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEe--ccccc-
Confidence            445567789999999999999887 78888999987633 79999999988777755    44322211111  11111 


Q ss_pred             HHHhhhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          199 VGKIQNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       199 i~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                           ......+|.||--+..+ ..+..+.+.|+|+|+++.+.
T Consensus       167 -----~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         167 -----GFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             -----CCSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             -----cccccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence                 01235688877666654 56889999999999998764

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.88  E-value=4.6e-05  Score=61.71  Aligned_cols=108  Identities=18%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             HHHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHH----cC---CCEeeccCCCCcch
Q 020928          124 VGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARN----LG---ADETAKVSTDIEDV  195 (319)
Q Consensus       124 ~a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~----~g---~~~v~~~~~~~~~~  195 (319)
                      -+.+.+..++++||++||=.|+|+ |.+++.||+..|.+ +|++++.+++..+.+++    ++   .+.+....   .|.
T Consensus        84 D~s~Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~---~d~  159 (264)
T d1i9ga_          84 DAAQIVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV---SDL  159 (264)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC---SCG
T ss_pred             HHHHHHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe---ccc
Confidence            344556789999999999999887 88889999988643 79999999998887765    11   12211111   111


Q ss_pred             hHHHHHhhhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          196 DTDVGKIQNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       196 ~~~i~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+    . ......+|.||--+..+ +.+..+.+.|+++|+++.+.
T Consensus       160 ~~----~-~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         160 AD----S-ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             GG----C-CCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cc----c-cccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEe
Confidence            11    0 11245789876545543 56788999999999998764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.78  E-value=6.7e-05  Score=56.56  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=56.6

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .++..++.++.+|+|+|+|+.+.+++..++..|++.+.++.++.++.+.+.+ ++...+...                 .
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~-----------------~   70 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSL-----------------E   70 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCC-----------------T
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcc-----------------c
Confidence            4566777788999999999999999999999999889999999988776654 443322110                 1


Q ss_pred             CCCccEEEEccC
Q 020928          207 GSGIDVSFDCVG  218 (319)
Q Consensus       207 ~~~~d~v~d~~g  218 (319)
                      ...+|++++|..
T Consensus        71 ~~~~DliINaTp   82 (167)
T d1npya1          71 NQQADILVNVTS   82 (167)
T ss_dssp             TCCCSEEEECSS
T ss_pred             ccchhhheeccc
Confidence            246899999876

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.74  E-value=2.2e-05  Score=62.16  Aligned_cols=103  Identities=15%  Similarity=0.169  Sum_probs=70.6

Q ss_pred             HHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-EeeccCCCCcchhHHHHHhhhh
Q 020928          127 HACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       127 ~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ..++..+++++++||-+|+|. |..+..+|+..+  +|++++.+++..+.+++.-.. ..+.+..  .+....   +.  
T Consensus        61 ~ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~~~nv~~~~--~d~~~g---~~--  130 (224)
T d1vbfa_          61 FMLDELDLHKGQKVLEIGTGI-GYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYYNNIKLIL--GDGTLG---YE--  130 (224)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTCSSEEEEE--SCGGGC---CG--
T ss_pred             HHHHHhhhcccceEEEecCCC-CHHHHHHHHHhc--ccccccccHHHHHHHHHHHhccccccccc--Cchhhc---ch--
Confidence            356778999999999999886 777777888743  799999999988888773211 1111100  111110   11  


Q ss_pred             cCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      ....||.|+-+.+.+...+.+++.|++||+++..
T Consensus       131 ~~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         131 EEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             GGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence            1356999987666665667788999999999875

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.72  E-value=4.7e-05  Score=61.20  Aligned_cols=103  Identities=13%  Similarity=0.153  Sum_probs=69.6

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHH----cC-CCEeeccCCCCcchhHHHHH
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARN----LG-ADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~~i~~  201 (319)
                      .+.+++++||++||-.|+|+ |.+++.+|+..|.. +|++++.+++..+.+++    ++ ...+....   .|+.+.   
T Consensus        77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~---~Di~~~---  149 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR---SDIADF---  149 (250)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC---SCTTTC---
T ss_pred             HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE---eeeecc---
Confidence            45678999999999999877 77888889886543 79999999998888775    22 22221111   122111   


Q ss_pred             hhhhcCCCccEEEEccCC-hHHHHHHHHhhcCCCEEEEec
Q 020928          202 IQNAMGSGIDVSFDCVGF-DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~-~~~~~~~~~~l~~~G~~v~~g  240 (319)
                       .  ....+|.||--... ...+..+.+.|+++|+++.+.
T Consensus       150 -~--~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         150 -I--SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             -C--CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             -c--ccceeeeeeecCCchHHHHHHHHHhcCCCceEEEEe
Confidence             1  24569988754444 356889999999999998763

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.4e-05  Score=63.51  Aligned_cols=105  Identities=19%  Similarity=0.193  Sum_probs=70.2

Q ss_pred             HHHHHhc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHH----cCCC-----EeeccCCCCc
Q 020928          126 VHACRRA--NVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARN----LGAD-----ETAKVSTDIE  193 (319)
Q Consensus       126 ~~~l~~~--~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~----~g~~-----~v~~~~~~~~  193 (319)
                      ...++..  ++++|++||-+|+|. |..+..+|+..|.. +|++++.+++-.+.+++    .+..     .+...   ..
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~---~g  139 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV---VG  139 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE---ES
T ss_pred             HHHHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE---Ee
Confidence            3455543  789999999999887 88888899887633 79999999887766643    2221     11100   00


Q ss_pred             chhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          194 DVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       194 ~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      |....   .  .....||.|+-+..-+...+.+++.|+++|+++..
T Consensus       140 D~~~~---~--~~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         140 DGRMG---Y--AEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             CGGGC---C--GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             ecccc---c--chhhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            11000   0  11357999987766665667889999999999874

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.62  E-value=0.0017  Score=48.00  Aligned_cols=74  Identities=16%  Similarity=0.351  Sum_probs=54.7

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHH-HHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL-SIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      --.+.++||+|+|.+|..+++.+...|++.+.++.++.++. +++++++.. +..++    ++.+.   +     ..+|+
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~~----~~~~~---l-----~~~Di   87 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRFD----ELVDH---L-----ARSDV   87 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCGG----GHHHH---H-----HTCSE
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccch----hHHHH---h-----ccCCE
Confidence            34678999999999999999988889998888998987664 466777743 22221    22221   2     26999


Q ss_pred             EEEccCCh
Q 020928          213 SFDCVGFD  220 (319)
Q Consensus       213 v~d~~g~~  220 (319)
                      ||.|++.+
T Consensus        88 vi~atss~   95 (159)
T d1gpja2          88 VVSATAAP   95 (159)
T ss_dssp             EEECCSSS
T ss_pred             EEEecCCC
Confidence            99999875

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=0.00058  Score=54.54  Aligned_cols=104  Identities=21%  Similarity=0.307  Sum_probs=70.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCE-eeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +|++++|+| ++++|.+.++.+...|+ +|+.+++++++.+.+. +++... .+..+ ++.++....+.++.+.. +++|
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD   80 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEF-GEVD   80 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHT-CSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhccc-CCcc
Confidence            478899998 69999999998888999 7888889888766544 455322 11112 22334444445554433 5799


Q ss_pred             EEEEccCCh-------------------------HHHHHHHHhh--cCCCEEEEecc
Q 020928          212 VSFDCVGFD-------------------------KTMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      +++++.|..                         ...+.+++.|  +.+|+++.+++
T Consensus        81 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS  137 (243)
T d1q7ba_          81 ILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGS  137 (243)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             eehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecc
Confidence            999998763                         1345666676  55799999874

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.48  E-value=0.00091  Score=53.93  Aligned_cols=105  Identities=13%  Similarity=0.165  Sum_probs=68.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      +|+++||+| ++++|.++.+.+...|+ +|+..++++++.+.+.    +.+... .+..+ ++.++....+.++.+..+.
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            578999998 59999999998888999 7888888887765432    233222 11112 2223333444444444455


Q ss_pred             CccEEEEccCCh-------------------------HHHHHHHHhh--cCCCEEEEecc
Q 020928          209 GIDVSFDCVGFD-------------------------KTMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       209 ~~d~v~d~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      .+|+++++.|..                         ...+.+.+.+  +.+|+++.++.
T Consensus        86 ~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS  145 (259)
T d2ae2a_          86 KLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISS  145 (259)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECC
T ss_pred             CceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccc
Confidence            799999999863                         0234455555  55789998875

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.47  E-value=0.0009  Score=53.75  Aligned_cols=104  Identities=14%  Similarity=0.232  Sum_probs=70.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEee-ccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETA-KVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~-~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +|+++||+| ++++|.++.+.+...|+ +|+.+++++++.+.+ ++++..... ..+ .+.++....+.++.+.. +.+|
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g~iD   82 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRL-GTLN   82 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHH-CSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHh-CCCC
Confidence            578899998 69999999998888999 788888888776644 456644332 112 22233344444444333 5799


Q ss_pred             EEEEccCCh-------------------------HHHHHHHHhhc-CCCEEEEecc
Q 020928          212 VSFDCVGFD-------------------------KTMSTALNATR-PGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~-------------------------~~~~~~~~~l~-~~G~~v~~g~  241 (319)
                      +++++.|..                         ...+.+.+.|+ .+|+++.+++
T Consensus        83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS  138 (253)
T d1hxha_          83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMAS  138 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccc
Confidence            999999863                         12455666674 5789998875

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.46  E-value=0.00065  Score=54.80  Aligned_cols=105  Identities=14%  Similarity=0.173  Sum_probs=67.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-H---cCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-N---LGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~---~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      +|+++||+| ++++|.++++.+...|+ +|+.+++++++.+.+. +   .+... .+..+ ++.++....+.++.+..++
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            578999998 69999999998888999 7888888887655442 2   23221 11112 2223444444455444455


Q ss_pred             CccEEEEccCChH-------------------------HHHHHHHhh--cCCCEEEEecc
Q 020928          209 GIDVSFDCVGFDK-------------------------TMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       209 ~~d~v~d~~g~~~-------------------------~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      .+|+++++.|...                         ..+.+.+.|  +.+|+++.++.
T Consensus        86 ~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS  145 (259)
T d1xq1a_          86 KLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSS  145 (259)
T ss_dssp             CCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-
T ss_pred             CcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccc
Confidence            7999999998631                         234455555  45689998874

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=0.00041  Score=56.98  Aligned_cols=100  Identities=14%  Similarity=0.197  Sum_probs=68.0

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEeeccCCCCcchhHHHHHhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ++++++++|++||=+|+|- |-.++.+|+..|+ .|++++.+++..+.++    +.|....+....  .+.       . 
T Consensus        54 ~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~--~d~-------~-  121 (291)
T d1kpia_          54 LDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI--QGW-------E-  121 (291)
T ss_dssp             HHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE--CCG-------G-
T ss_pred             HHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhh--hcc-------c-
Confidence            4678999999999999875 5578899999998 7899999998755544    455433222111  111       1 


Q ss_pred             hcCCCccEEEE-----ccCC----------hHHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFD-----CVGF----------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d-----~~g~----------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...+.||.|+.     .++.          +..++.+.+.|+|+|+++.-.
T Consensus       122 ~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         122 EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            12457888753     3332          246778899999999988543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.41  E-value=0.0018  Score=44.82  Aligned_cols=93  Identities=14%  Similarity=0.050  Sum_probs=61.6

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC--hhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD--VQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~--~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .|.+|||+|+|.+|..-++.+...|+ .|++++..  ++...++++-+... ..-.....+            -.++++|
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~~-~~~~~~~~d------------l~~~~lv   76 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLTL-VEGPFDETL------------LDSCWLA   76 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCEE-EESSCCGGG------------GTTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCcee-eccCCCHHH------------hCCCcEE
Confidence            47899999999999999999999999 55555432  33333333222221 111111111            1368999


Q ss_pred             EEccCChHHHHHHHHhhcCCCEEEEeccc
Q 020928          214 FDCVGFDKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      +.+.+.++.-....+..++.|.++.+...
T Consensus        77 ~~at~d~~~n~~i~~~a~~~~ilVNv~D~  105 (113)
T d1pjqa1          77 IAATDDDTVNQRVSDAAESRRIFCNVVDA  105 (113)
T ss_dssp             EECCSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             eecCCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence            99999886667788888999988877543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.40  E-value=0.0011  Score=53.54  Aligned_cols=104  Identities=21%  Similarity=0.311  Sum_probs=69.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEe-eccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADET-AKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      +|+++||+| ++++|.++...+...|+ .|+.+++++++.+.+.    +.|.... +..+ ++.++....+.++.+.. +
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g   81 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF-G   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            588999998 69999999998888999 7888889887766443    2343221 2112 22334444455544433 4


Q ss_pred             CccEEEEccCCh--------------------------HHHHHHHHhh--cCCCEEEEecc
Q 020928          209 GIDVSFDCVGFD--------------------------KTMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       209 ~~d~v~d~~g~~--------------------------~~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      .+|+++++.|..                          ...+.+++.|  +.+|+++.+++
T Consensus        82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS  142 (260)
T d1zema1          82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTAS  142 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeec
Confidence            799999998852                          0244555555  67799999874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=0.00023  Score=57.30  Aligned_cols=96  Identities=20%  Similarity=0.309  Sum_probs=64.9

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      ..++|++||=+|+|. |..++.+++ .|. +|++++.++...+.+++    .+....+.    ..+...    ..  ...
T Consensus       117 ~~~~g~~VLDiGcGs-G~l~i~aa~-~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~----~~d~~~----~~--~~~  183 (254)
T d2nxca1         117 HLRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFL----EGSLEA----AL--PFG  183 (254)
T ss_dssp             HCCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEE----ESCHHH----HG--GGC
T ss_pred             hcCccCEEEEcccch-hHHHHHHHh-cCC-EEEEEECChHHHHHHHHHHHHcCCceeEE----eccccc----cc--ccc
Confidence            368999999999876 777776665 687 79999999988777764    34322111    112211    11  235


Q ss_pred             CccEEEEccCCh---HHHHHHHHhhcCCCEEEEecc
Q 020928          209 GIDVSFDCVGFD---KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       209 ~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .+|+|+.+....   ..++.+.+.|+|+|+++..|.
T Consensus       184 ~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgi  219 (254)
T d2nxca1         184 PFDLLVANLYAELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             CEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccchhhhccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            799998765543   345677789999999997653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.35  E-value=0.0001  Score=58.27  Aligned_cols=104  Identities=16%  Similarity=0.204  Sum_probs=64.9

Q ss_pred             HHHHh--cCCCCCCeEEEECCCHHHHHHHHHHHHc---CC---CeEEEecCChhHHHHHHHc---------CCCEeeccC
Q 020928          127 HACRR--ANVGPETNVMIMGSGPIGLVTLLAARAF---GA---PRIIITDVDVQRLSIARNL---------GADETAKVS  189 (319)
Q Consensus       127 ~~l~~--~~~~~~~~vlI~G~g~vG~~ai~la~~~---g~---~~vv~v~~~~~~~~~~~~~---------g~~~v~~~~  189 (319)
                      ..++.  .+++++++||.+|+|. |..+..+++..   |.   .+|++++..++-.+.+++.         +...+....
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            34554  3799999999998765 55555555554   42   2699999988766655431         211221111


Q ss_pred             CCCcchhHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEe
Q 020928          190 TDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       190 ~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      .   |....   .  .....||.|+-+.+-+.....+.+.|+++|+++..
T Consensus       148 ~---d~~~~---~--~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         148 G---DGRKG---Y--PPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVP  189 (223)
T ss_dssp             S---CGGGC---C--GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             c---ccccc---c--ccccceeeEEEEeechhchHHHHHhcCCCcEEEEE
Confidence            1   11110   0  11357999887776665667888999999999874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0032  Score=50.10  Aligned_cols=106  Identities=21%  Similarity=0.299  Sum_probs=68.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCE-eeccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADE-TAKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~-v~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .|+++||+| ++++|......+...|+ .|+.+++++++.+.+.    +.|... .+..+- +.++....++++.+.. +
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~-g   83 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI-G   83 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-C
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc-C
Confidence            578999998 59999988888888899 7888999988765443    344321 222222 2223334444444433 4


Q ss_pred             CccEEEEccCChH-------------------------HHHHHHHhh--cCCCEEEEecccC
Q 020928          209 GIDVSFDCVGFDK-------------------------TMSTALNAT--RPGGKVCLIGLAK  243 (319)
Q Consensus       209 ~~d~v~d~~g~~~-------------------------~~~~~~~~l--~~~G~~v~~g~~~  243 (319)
                      .+|+++++.|...                         ..+..++.|  +..|+++.+++..
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~  145 (244)
T d1yb1a_          84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAA  145 (244)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred             CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecch
Confidence            6999999999741                         234555556  3357899887543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.33  E-value=0.0018  Score=51.88  Aligned_cols=104  Identities=25%  Similarity=0.307  Sum_probs=68.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCE-eeccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +|+++||+| ++++|.+.++.+...|+ +|+.+++++++.+.+ ++++... .+..+ .+.++....+.++.+.. +++|
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD   81 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEF-GSVD   81 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHc-CCcc
Confidence            578999998 69999999998888999 688888888776544 4465322 11112 22334444444444433 4799


Q ss_pred             EEEEccCCh-------------------------HHHHHHHHhh--cCCCEEEEecc
Q 020928          212 VSFDCVGFD-------------------------KTMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      +++++.|..                         ...+.+++.|  +.+|+++.+++
T Consensus        82 ilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS  138 (254)
T d1hdca_          82 GLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISS  138 (254)
T ss_dssp             EEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             EEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeeccccc
Confidence            999998863                         0234445544  45799999875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.31  E-value=0.00093  Score=53.27  Aligned_cols=81  Identities=23%  Similarity=0.333  Sum_probs=57.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccC-CCCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      +++++||+| ++++|.+.++.+...|+ +|+.+++++++.+.+.+ +++..+ ..+ .+.++....+.++.+.. +.+|+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~-g~iDi   80 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPV-VMDVADPASVERGFAEALAHL-GRLDG   80 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEE-ECCTTCHHHHHHHHHHHHHHH-SSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEE-EEecCCHHHHHHHHHHHHHhc-CCceE
Confidence            478999998 59999999999999999 78888998887765544 554332 222 23334444555555444 46999


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      ++++.|.
T Consensus        81 lVnnAG~   87 (242)
T d1ulsa_          81 VVHYAGI   87 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999886

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=0.0026  Score=50.85  Aligned_cols=104  Identities=13%  Similarity=0.273  Sum_probs=68.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHH-----HHHcCCCEe-eccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSI-----ARNLGADET-AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~-----~~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +|+++||+| ++++|.+..+.+...|+ +|+.+++++++.+.     .++.|.... +..+ .+.++....+.++.+.. 
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF-   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc-
Confidence            478899998 69999999999999999 78888888776442     233454322 2112 22334444444444433 


Q ss_pred             CCccEEEEccCCh-------------------------HHHHHHHHhhc--CCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD-------------------------KTMSTALNATR--PGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~  241 (319)
                      +++|+++++.|..                         ...+.+++.|.  .+|+++.++.
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S  142 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS  142 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccccccc
Confidence            4799999999863                         13566677774  4579998864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.26  E-value=0.001  Score=53.55  Aligned_cols=84  Identities=15%  Similarity=0.236  Sum_probs=56.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eeccCCC-CcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKVSTD-IEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~~~~-~~~~~~~i~~~~~~~~~  208 (319)
                      +|+++||+| ++++|.+.++.+...|+ .|+.+++++++.+.+    ++.+... .+..+-. .++....+.++.+..++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            688999998 69999999999889999 788888888764433    3344332 2222222 23333344445544556


Q ss_pred             CccEEEEccCCh
Q 020928          209 GIDVSFDCVGFD  220 (319)
Q Consensus       209 ~~d~v~d~~g~~  220 (319)
                      .+|+++++.|..
T Consensus        84 ~idilinnag~~   95 (258)
T d1ae1a_          84 KLNILVNNAGVV   95 (258)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CcEEEecccccc
Confidence            799999998874

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.001  Score=53.34  Aligned_cols=104  Identities=24%  Similarity=0.217  Sum_probs=69.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccC-CCCcchhHHHHHhhhhcCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      +|+++||+| ++++|.++.+.+...|+ +|+..++++++.+.+.+ ++....+..+ ++.++....+.++.+.. +++|+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g~iDi   82 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRF-GRLDC   82 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhc-CCCCE
Confidence            588999998 59999999998888999 78888999888776655 4432222222 22334444444444433 47999


Q ss_pred             EEEccCCh--------------------------HHHHHHHHhhcC-CCEEEEecc
Q 020928          213 SFDCVGFD--------------------------KTMSTALNATRP-GGKVCLIGL  241 (319)
Q Consensus       213 v~d~~g~~--------------------------~~~~~~~~~l~~-~G~~v~~g~  241 (319)
                      ++++.|..                          ...+.+++.|+. +|+++.+++
T Consensus        83 lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS  138 (250)
T d1ydea1          83 VVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISS  138 (250)
T ss_dssp             EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             EEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCccccc
Confidence            99999842                          124455556643 589998874

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0028  Score=50.88  Aligned_cols=83  Identities=19%  Similarity=0.304  Sum_probs=56.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCC-CEee--ccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGA-DETA--KVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~-~~v~--~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      +++++||+| ++++|.+++..+...|+ .|+.+++++++.+.+.    +.+. ..++  ..+ .+.++..+.+..+.+..
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            578899998 69999999998888999 6888888887765532    2332 1222  111 23344455555555444


Q ss_pred             CCCccEEEEccCCh
Q 020928          207 GSGIDVSFDCVGFD  220 (319)
Q Consensus       207 ~~~~d~v~d~~g~~  220 (319)
                       +++|+++++.|..
T Consensus        88 -g~iD~lVnnAg~~  100 (257)
T d1xg5a_          88 -SGVDICINNAGLA  100 (257)
T ss_dssp             -CCCSEEEECCCCC
T ss_pred             -CCCCEEEeccccc
Confidence             5699999999873

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.00051  Score=56.20  Aligned_cols=99  Identities=12%  Similarity=0.173  Sum_probs=67.5

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ++++++++|++||=+|+|- |..++.+|+..|+ .|++++.+++..+.+++    .|...-+.+.  ..|+    ..   
T Consensus        55 ~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~--~~d~----~~---  123 (285)
T d1kpga_          55 LGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVL--LAGW----EQ---  123 (285)
T ss_dssp             HTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEE--ESCG----GG---
T ss_pred             HHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHH--Hhhh----hc---
Confidence            3568999999999999877 7788999999998 89999999988777655    2321111110  0121    11   


Q ss_pred             hcCCCccEEEE-----ccCCh---HHHHHHHHhhcCCCEEEEe
Q 020928          205 AMGSGIDVSFD-----CVGFD---KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       205 ~~~~~~d~v~d-----~~g~~---~~~~~~~~~l~~~G~~v~~  239 (319)
                       ....+|.|+.     .++..   ..+..+.+.|+|+|+++.-
T Consensus       124 -~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         124 -FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             -CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             -ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence             1346777643     33322   4677888999999998753

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0017  Score=52.57  Aligned_cols=83  Identities=17%  Similarity=0.161  Sum_probs=51.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEe--eccCCCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADET--AKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v--~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      +|+++||+| ++++|.++...+...|+ .|+.+++++++.+.+.+    .....+  +..+....+....+........+
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            578999998 59999999998888998 78888899888765533    222222  11122222222222222222235


Q ss_pred             CccEEEEccCC
Q 020928          209 GIDVSFDCVGF  219 (319)
Q Consensus       209 ~~d~v~d~~g~  219 (319)
                      ..|+++++.|.
T Consensus        92 ~~~~li~nag~  102 (269)
T d1xu9a_          92 GLDMLILNHIT  102 (269)
T ss_dssp             SCSEEEECCCC
T ss_pred             Ccccccccccc
Confidence            78898887766

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.0017  Score=48.63  Aligned_cols=82  Identities=15%  Similarity=0.262  Sum_probs=54.5

Q ss_pred             HHHHhcC-CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          127 HACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       127 ~~l~~~~-~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ++|+..+ ..++++|||+|+|+.+.+++..+...|+ ++.++.|+.++.+.+.+ +.....+...    ++       .+
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~----~~-------~~   74 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQAL----SM-------DE   74 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEEC----CS-------GG
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhccccccc----cc-------cc
Confidence            3455434 4578999999999999999999899998 68888999888765544 3311111100    00       01


Q ss_pred             hcCCCccEEEEccCCh
Q 020928          205 AMGSGIDVSFDCVGFD  220 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~  220 (319)
                      .....+|++++|+...
T Consensus        75 ~~~~~~dliIN~Tp~G   90 (170)
T d1nyta1          75 LEGHEFDLIINATSSG   90 (170)
T ss_dssp             GTTCCCSEEEECCSCG
T ss_pred             ccccccceeecccccC
Confidence            1135689999998653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.15  E-value=0.0013  Score=52.80  Aligned_cols=104  Identities=20%  Similarity=0.246  Sum_probs=62.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEee----ccCCCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETA----KVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~----~~~~~~~~~~~~i~~~~~~~  206 (319)
                      +|+++||+| ++++|.++...+...|++.++..++ .++.+.+++    .+...+.    +......+..+.+.++.+..
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR-VENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES-SCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECC-cccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            478999998 6999999998888889954444444 333333322    2322221    22111223444455554444


Q ss_pred             CCCccEEEEccCChH-----------------HHHHHHHhhc-----CCCEEEEecc
Q 020928          207 GSGIDVSFDCVGFDK-----------------TMSTALNATR-----PGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~~-----------------~~~~~~~~l~-----~~G~~v~~g~  241 (319)
                       +++|++++++|...                 ..+.+++.|.     .+|+++.++.
T Consensus        83 -g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS  138 (254)
T d1sbya1          83 -KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             -SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             -CCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEec
Confidence             47999999999741                 3445555663     3588888864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.13  E-value=0.005  Score=49.01  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=67.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh--HHHHHHHcCCCEe-eccC-CCCcchhHHHHHhhhhcCCCc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ--RLSIARNLGADET-AKVS-TDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~--~~~~~~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      +|+++||+| ++++|.++.+.+...|+ +|+.++++++  ..+.+++.|.... +..+ ++.++....+.++.+.. +++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~-G~i   81 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF-GRC   81 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-SCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHc-CCC
Confidence            478899998 69999999999999999 6777776543  3445566664332 1112 22333344444444433 579


Q ss_pred             cEEEEccCCh----------H---------------HHHHHHHhh--cCCCEEEEecc
Q 020928          211 DVSFDCVGFD----------K---------------TMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       211 d~v~d~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      |+++++.|..          +               ..+..++.|  +.+|+++.+++
T Consensus        82 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS  139 (247)
T d2ew8a1          82 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTS  139 (247)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCcccccc
Confidence            9999999873          1               234455556  45689998874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.0036  Score=50.05  Aligned_cols=104  Identities=15%  Similarity=0.237  Sum_probs=67.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcC----CCEe--eccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLG----ADET--AKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g----~~~v--~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      .|+++||+| ++++|.++.+.+...|+ .|+.+++++++.+.+. ++.    ...+  +..+ ++.++..+.+.++.+..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            478999998 69999999999889999 7888888887755443 232    1111  1111 22334444455554433


Q ss_pred             CCCccEEEEccCChH-----------------HHHHHHHhhcC-----CCEEEEecc
Q 020928          207 GSGIDVSFDCVGFDK-----------------TMSTALNATRP-----GGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~~-----------------~~~~~~~~l~~-----~G~~v~~g~  241 (319)
                       +++|+++++.|...                 ....+++.|..     +|+++.+++
T Consensus        81 -G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS  136 (254)
T d2gdza1          81 -GRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  136 (254)
T ss_dssp             -SCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             -CCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeecc
Confidence             47999999998741                 23445555533     478998874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.0013  Score=53.65  Aligned_cols=99  Identities=12%  Similarity=0.233  Sum_probs=66.6

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      +++.++++|++||=+|+|- |-.+..+++..|+ .|++++.+++..+.+++    .|....+....  .+.    ..   
T Consensus        45 ~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~--~d~----~~---  113 (280)
T d2fk8a1          45 LDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL--QGW----ED---  113 (280)
T ss_dssp             HTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE--SCG----GG---
T ss_pred             HHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhh--hhh----hh---
Confidence            3568899999999999875 4567788988898 89999999998777665    34322111100  111    11   


Q ss_pred             hcCCCccEEEE-----ccCCh---HHHHHHHHhhcCCCEEEEe
Q 020928          205 AMGSGIDVSFD-----CVGFD---KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       205 ~~~~~~d~v~d-----~~g~~---~~~~~~~~~l~~~G~~v~~  239 (319)
                       ....+|.|+.     .++.+   ..++.+.+.|+|+|+++.-
T Consensus       114 -~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         114 -FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             -CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             -hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence             1356888743     33322   3578889999999999764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.10  E-value=0.0037  Score=49.89  Aligned_cols=104  Identities=12%  Similarity=0.133  Sum_probs=67.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEe-eccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADET-AKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      +++.+||+| ++++|.++.+.+...|+ +|+.+++++++.+.+.    +.|.... +..+ ++.++....+.++.+. .+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~-~g   86 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE-HK   86 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH-CS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh-cC
Confidence            467888898 59999999998888898 7888888887765433    3443221 1112 2233444444444443 35


Q ss_pred             CccEEEEccCCh-------------------------HHHHHHHHhh--cCCCEEEEecc
Q 020928          209 GIDVSFDCVGFD-------------------------KTMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       209 ~~d~v~d~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      .+|+++++.|..                         ...+.+++.|  +.+|+++.+++
T Consensus        87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS  146 (251)
T d2c07a1          87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISS  146 (251)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECC
Confidence            799999998863                         0234455555  56699999874

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0009  Score=55.63  Aligned_cols=109  Identities=18%  Similarity=0.226  Sum_probs=70.3

Q ss_pred             HHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHH----cC-----------CCEeecc
Q 020928          125 GVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARN----LG-----------ADETAKV  188 (319)
Q Consensus       125 a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~----~g-----------~~~v~~~  188 (319)
                      +.+.+..++++||++||=.|+|+ |.+++.||+..|.+ +|++++.+++..+.+++    ++           .+.+...
T Consensus        87 ~~~Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~  165 (324)
T d2b25a1          87 INMILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  165 (324)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHHHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence            44566779999999999999887 88999999988754 79999999988877764    11           1111100


Q ss_pred             CCCCcchhHHHHHhhhhcCCCccEEEEccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          189 STDIEDVDTDVGKIQNAMGSGIDVSFDCVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       189 ~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .   .|+......+   ....+|.||=-+..+ ..+..+.+.|+|+|+++.+.
T Consensus       166 ~---~di~~~~~~~---~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         166 H---KDISGATEDI---KSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             E---SCTTCCC----------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             e---cchhhccccc---CCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence            0   1111111111   134578776333433 46788999999999998764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.06  E-value=0.00035  Score=53.55  Aligned_cols=109  Identities=10%  Similarity=0.019  Sum_probs=68.1

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc-CCCEee-------ccCCCCcch-hHHH
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL-GADETA-------KVSTDIEDV-DTDV  199 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~-g~~~v~-------~~~~~~~~~-~~~i  199 (319)
                      +....++++.+||..|+|. |..++.||+. |+ .|+++|.+++..+.+++. +.....       .+......+ ....
T Consensus        13 ~~~l~~~~~~rvLd~GCG~-G~~a~~la~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHcCCCCCCEEEEecCcC-CHHHHHHHHc-CC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            3456799999999999887 8888899975 88 899999999999988873 211110       000000000 0000


Q ss_pred             HHhhhhcCCCccEEEEccCC--------hHHHHHHHHhhcCCCEEEEec
Q 020928          200 GKIQNAMGSGIDVSFDCVGF--------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       200 ~~~~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+.......+|.|++...-        ...++.+.+.|+++|+++...
T Consensus        90 ~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          90 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            00111112458888875442        135677888999999976543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0026  Score=50.59  Aligned_cols=80  Identities=19%  Similarity=0.184  Sum_probs=55.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +|+++||+| ++++|.+.++.+...|+ +|+.+++++++.+.+ ++++....+..+-.++   +.++++.+.. +.+|++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~---~~v~~~~~~~-g~iDil   80 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGDW---EATERALGSV-GPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCH---HHHHHHHTTC-CCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCCH---HHHHHHHHHh-CCceEE
Confidence            688999998 69999999999888999 788889988876644 4455433333222222   2344444433 479999


Q ss_pred             EEccCCh
Q 020928          214 FDCVGFD  220 (319)
Q Consensus       214 ~d~~g~~  220 (319)
                      +++.|..
T Consensus        81 VnnAg~~   87 (244)
T d1pr9a_          81 VNNAAVA   87 (244)
T ss_dssp             EECCCCC
T ss_pred             Eeccccc
Confidence            9998863

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0011  Score=52.84  Aligned_cols=80  Identities=21%  Similarity=0.323  Sum_probs=55.5

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      +|+++||+| ++++|.+..+.+...|+ .|+.+++++++.+.+.+.........+....   +.+....+. -.++|.++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~---~~~~~~~~~-~~~id~lV   79 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTKK---KQIDQFANE-VERLDVLF   79 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTCH---HHHHHHHHH-CSCCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeecccc---ccccccccc-cccceeEE
Confidence            578899998 69999999999999999 7888899988877666644333333222222   233333332 35799999


Q ss_pred             EccCCh
Q 020928          215 DCVGFD  220 (319)
Q Consensus       215 d~~g~~  220 (319)
                      ++.|..
T Consensus        80 n~ag~~   85 (245)
T d2ag5a1          80 NVAGFV   85 (245)
T ss_dssp             ECCCCC
T ss_pred             eccccc
Confidence            998863

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.0014  Score=52.01  Aligned_cols=94  Identities=19%  Similarity=0.304  Sum_probs=67.7

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      .++++.+||=+|+|. |..+..+++ .|. .|++++.+++..+.+++-+....+..+.  .+       +. ...+.+|+
T Consensus        39 ~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~--~~-------l~-~~~~~fD~  105 (246)
T d2avna1          39 YLKNPCRVLDLGGGT-GKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA--ED-------LP-FPSGAFEA  105 (246)
T ss_dssp             HCCSCCEEEEETCTT-CHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT--TS-------CC-SCTTCEEE
T ss_pred             hcCCCCEEEEECCCC-chhcccccc-cce-EEEEeecccccccccccccccccccccc--cc-------cc-cccccccc
Confidence            356788999999986 889988887 487 7999999999999999977655443221  11       11 12467999


Q ss_pred             EEEccCC-------hHHHHHHHHhhcCCCEEEEe
Q 020928          213 SFDCVGF-------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       213 v~d~~g~-------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      |+.....       ...+..+.+.|++||.++..
T Consensus       106 ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         106 VLALGDVLSYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             EEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence            8864332       13567888999999988753

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=0.0021  Score=51.19  Aligned_cols=104  Identities=15%  Similarity=0.209  Sum_probs=68.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCCEe-eccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGADET-AKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +|+++||+| ++++|.++.+.+...|+ +|+.+++++++.+.+. +++.... +..+ ++.++....++++.+.. +++|
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id   82 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAF-GGLH   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHh-CCCe
Confidence            578999998 59999999998888999 7888889888766544 4542221 1111 22334444445554433 4699


Q ss_pred             EEEEccCChH-------------------------HHHHHHHhh--cCCCEEEEecc
Q 020928          212 VSFDCVGFDK-------------------------TMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~~-------------------------~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      +++++.|...                         ..+.+.+.|  +.+|+++.++.
T Consensus        83 ilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS  139 (244)
T d1nffa_          83 VLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISS  139 (244)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             EEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccc
Confidence            9999998730                         233444555  45689998875

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.97  E-value=0.0012  Score=52.90  Aligned_cols=101  Identities=13%  Similarity=0.137  Sum_probs=65.3

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCE-eeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADE-TAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +.||+| ++++|.++...+...|+ +|+..+++.++.+.+++.+... ..+. .+.++..+.+.++.+.. +++|+++++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv-~~~~~~~~~~~~~~~~~-G~iDiLVnN   78 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKP-MSEQEPAELIEAVTSAY-GQVDVLVSN   78 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEE-CCCCSHHHHHHHHHHHH-SCCCEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEecc-CCHHHHHHHHHHHHHHc-CCCCEEEEC
Confidence            678888 58999999998888999 7888888777766665533111 1111 22345555555555444 479999987


Q ss_pred             cCCh-----------H---------------HHHHHHHhh--cCCCEEEEeccc
Q 020928          217 VGFD-----------K---------------TMSTALNAT--RPGGKVCLIGLA  242 (319)
Q Consensus       217 ~g~~-----------~---------------~~~~~~~~l--~~~G~~v~~g~~  242 (319)
                      .|..           +               ..+.+++.|  +.+|+++.++..
T Consensus        79 Ag~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~  132 (252)
T d1zmta1          79 DIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSA  132 (252)
T ss_dssp             CCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccc
Confidence            7642           0               234455555  446999988753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.96  E-value=0.0018  Score=48.87  Aligned_cols=96  Identities=18%  Similarity=0.159  Sum_probs=62.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCC----CCcchhHHHHHhhhhcCCCccEE
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVST----DIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~----~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +++.|+|+|.+|.+....+...|. .|...++++++.+.+++.+.........    ........+.+..    ...|++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~aD~i   76 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADVI   76 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----cCCCEE
Confidence            689999999999999999999998 7899999999988888766322211000    0000001111111    368999


Q ss_pred             EEccCChH---HHHHHHHhhcCCCEEEE
Q 020928          214 FDCVGFDK---TMSTALNATRPGGKVCL  238 (319)
Q Consensus       214 ~d~~g~~~---~~~~~~~~l~~~G~~v~  238 (319)
                      |-++....   .+.++.+++.++..++.
T Consensus        77 ii~v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          77 LIVVPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             EECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence            99988752   33444556666665553

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.96  E-value=0.00071  Score=51.88  Aligned_cols=76  Identities=14%  Similarity=0.300  Sum_probs=51.5

Q ss_pred             CCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cC----C-CEeeccCCCCcchhHHHHHhhhhc
Q 020928          134 VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LG----A-DETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       134 ~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g----~-~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      -=++++++|+| +|++|..+...+...|+ +|+.+++++++.+.+.+ +.    . ....+..    + ...+++.    
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~----~-~~~~~~~----   89 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETA----D-DASRAEA----   89 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECC----S-HHHHHHH----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhcc----c-HHHHHHH----
Confidence            44789999998 69999999999999998 78888898887655533 22    1 1112211    1 1233333    


Q ss_pred             CCCccEEEEccCC
Q 020928          207 GSGIDVSFDCVGF  219 (319)
Q Consensus       207 ~~~~d~v~d~~g~  219 (319)
                      -+++|++|++.|.
T Consensus        90 ~~~iDilin~Ag~  102 (191)
T d1luaa1          90 VKGAHFVFTAGAI  102 (191)
T ss_dssp             TTTCSEEEECCCT
T ss_pred             hcCcCeeeecCcc
Confidence            2478999999874

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00028  Score=55.98  Aligned_cols=99  Identities=12%  Similarity=0.096  Sum_probs=65.0

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC---EeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD---ETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      ..+|.+||-+|+|. |..+..+++..+. .+++++.++...+.+++....   .+..+   ..+.......+   ....+
T Consensus        51 ~~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~f  122 (229)
T d1zx0a1          51 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPL---KGLWEDVAPTL---PDGHF  122 (229)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEE---ESCHHHHGGGS---CTTCE
T ss_pred             ccCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhcccccccc---ccccccccccc---ccccc
Confidence            46789999999877 7788888886655 799999999999988874321   11111   11211111111   24568


Q ss_pred             cEE-EEccCCh----------HHHHHHHHhhcCCCEEEEec
Q 020928          211 DVS-FDCVGFD----------KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       211 d~v-~d~~g~~----------~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |.+ ||++...          ..+..+.+.|+|||+++...
T Consensus       123 D~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         123 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            887 5655432          24567888999999998653

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.95  E-value=0.0071  Score=49.61  Aligned_cols=103  Identities=18%  Similarity=0.264  Sum_probs=64.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC---------hhHH-HHHHH---cCCCEeeccCCCCcchhHHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD---------VQRL-SIARN---LGADETAKVSTDIEDVDTDVGK  201 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~---------~~~~-~~~~~---~g~~~v~~~~~~~~~~~~~i~~  201 (319)
                      +|+++||+| ++++|.+..+.+...|+ .|+..+++         ++.. +..++   .+.....++ ...++....+.+
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~v~~   83 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANY-DSVEAGEKLVKT   83 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEEC-CCGGGHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhccccccccc-chHHHHHHHHHH
Confidence            478889998 59999999998889999 67766432         2222 22222   333333333 222344444554


Q ss_pred             hhhhcCCCccEEEEccCCh-------------------------HHHHHHHHhh--cCCCEEEEecc
Q 020928          202 IQNAMGSGIDVSFDCVGFD-------------------------KTMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      ..+. .+++|+++++.|..                         ...+.+++.|  +.+|+++.+++
T Consensus        84 ~~~~-~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS  149 (302)
T d1gz6a_          84 ALDT-FGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTAS  149 (302)
T ss_dssp             HHHH-TSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HHHH-cCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCC
Confidence            4443 35799999999863                         1345566666  45689999875

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.93  E-value=0.003  Score=51.00  Aligned_cols=104  Identities=22%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH-HcCCC---EeeccC-CCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR-NLGAD---ETAKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~-~~g~~---~v~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      +|+++||+| ++++|.+.++.+...|+ +|+.+++++++.+.+. +++..   ..+..+ .+.++....+.++.+.. +.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~   82 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH-GK   82 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHc-CC
Confidence            678999998 69999999998888999 7888888888766543 34421   112112 22334444444444433 47


Q ss_pred             ccEEEEccCCh---------------------------HHHHHHHHhh--cCCCEEEEecc
Q 020928          210 IDVSFDCVGFD---------------------------KTMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       210 ~d~v~d~~g~~---------------------------~~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      +|+++++.|..                           ...+.+++.|  +.+|+++.++.
T Consensus        83 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss  143 (268)
T d2bgka1          83 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS  143 (268)
T ss_dssp             CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             cceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccc
Confidence            99999998842                           1345566666  45578887763

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.93  E-value=0.0014  Score=51.81  Aligned_cols=100  Identities=16%  Similarity=0.201  Sum_probs=67.6

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      +.+++++|++||=+|+|. |..+..+++. +. .|++++.++...+.+++    .+...+..+.....+       +. -
T Consensus        10 ~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~-------~~-~   78 (234)
T d1xxla_          10 KTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES-------LP-F   78 (234)
T ss_dssp             HHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB-------CC-S
T ss_pred             HHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhccccccccccccccccc-------cc-c
Confidence            568999999999999887 8888888875 55 79999999887666544    333322111111111       10 0


Q ss_pred             cCCCccEEEEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+.+|+|+..-.-      ...+..+.+.|+|+|+++...
T Consensus        79 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          79 PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            24569998854332      246888999999999988754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.93  E-value=0.0032  Score=51.51  Aligned_cols=82  Identities=12%  Similarity=0.164  Sum_probs=52.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-----HHcCCC-EeeccCCCCc-chhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-----RNLGAD-ETAKVSTDIE-DVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-----~~~g~~-~v~~~~~~~~-~~~~~i~~~~~~~~  207 (319)
                      +|+++||+| ++++|.+++..+...|+ +|+.+++++++.+.+     ++.|.. ..+..+-.+. +.........+ ..
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~-~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK-VA  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH-HT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh-hc
Confidence            468999998 69999999998888999 788888887664322     233432 2222222222 22222333332 35


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus       102 g~iDilvnnAg~  113 (294)
T d1w6ua_         102 GHPNIVINNAAG  113 (294)
T ss_dssp             CSCSEEEECCCC
T ss_pred             cccchhhhhhhh
Confidence            689999999886

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.93  E-value=0.0021  Score=50.89  Aligned_cols=100  Identities=18%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHH-HHHhhhh-cCCCccE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTD-VGKIQNA-MGSGIDV  212 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~-i~~~~~~-~~~~~d~  212 (319)
                      +|++|||+| ++++|.+.++.+...|+ .|+.++..+....     .............+..+. ...+.+. ...++|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc-----cccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            478999998 59999999999999999 6777766544311     111111111111111111 1122221 2346999


Q ss_pred             EEEccCCh--------------------------HHHHHHHHhhcCCCEEEEecc
Q 020928          213 SFDCVGFD--------------------------KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       213 v~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ++++.|..                          ...+.+.+.|+.+|+++.++.
T Consensus        75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS  129 (236)
T d1dhra_          75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGA  129 (236)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEcc
Confidence            99998841                          024556667888999999875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.93  E-value=0.0062  Score=49.15  Aligned_cols=104  Identities=16%  Similarity=0.261  Sum_probs=68.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC-hhHHH----HHHHcCCCEee-ccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD-VQRLS----IARNLGADETA-KVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~-~~~~~----~~~~~g~~~v~-~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +|+++||+| ++++|.++.+.+...|+ .|+..+++ ++..+    .+++.+.+... ..+ .+.++....+.++.+.. 
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~-   94 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF-   94 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh-
Confidence            378999998 69999999999999999 56666554 44333    33445543322 122 22334444555554433 


Q ss_pred             CCccEEEEccCCh-------------------------HHHHHHHHhhcCCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD-------------------------KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +++|+++++.|..                         ...+.+.+.|..+|+++.++.
T Consensus        95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s  153 (272)
T d1g0oa_          95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  153 (272)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence            4799999998864                         135677788889999888864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.90  E-value=0.0074  Score=42.82  Aligned_cols=74  Identities=16%  Similarity=0.178  Sum_probs=53.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +|+|+|.|.+|..+++.+...|. .|++++.++++.+.+++ ++.. ++.-+..+.+   .+++.   .-..+|.++-+.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~-vi~Gd~~~~~---~l~~~---~i~~a~~vv~~t   73 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL-VINGDCTKIK---TLEDA---GIEDADMYIAVT   73 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE-EEESCTTSHH---HHHHT---TTTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhh-hccCcccchh---hhhhc---ChhhhhhhcccC
Confidence            58899999999999999999998 79999999998887765 5543 3322222222   22222   235689999888


Q ss_pred             CCh
Q 020928          218 GFD  220 (319)
Q Consensus       218 g~~  220 (319)
                      +.+
T Consensus        74 ~~d   76 (132)
T d1lssa_          74 GKE   76 (132)
T ss_dssp             SCH
T ss_pred             CcH
Confidence            876

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.89  E-value=0.0027  Score=50.95  Aligned_cols=105  Identities=17%  Similarity=0.232  Sum_probs=67.9

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH----HHHHcCCCEe-eccCC-CCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS----IARNLGADET-AKVST-DIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~----~~~~~g~~~v-~~~~~-~~~~~~~~i~~~~~~~~~  208 (319)
                      .|+++||+| ++++|.+..+.+...|+++++...++++..+    .+++.|.... +..+- +.++..+.+.++.+.. +
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~-g   83 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF-G   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc-C
Confidence            578999998 6999999999999999954444455555433    3344564332 22222 2334444455544444 4


Q ss_pred             CccEEEEccCCh-------------------------HHHHHHHHhhcCCCEEEEecc
Q 020928          209 GIDVSFDCVGFD-------------------------KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       209 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ++|+++++.|..                         ...+..++.|+.+|+++.+..
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s  141 (259)
T d1ja9a_          84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  141 (259)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccc
Confidence            699999999874                         145667778888888877653

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.89  E-value=0.0036  Score=48.49  Aligned_cols=102  Identities=10%  Similarity=0.065  Sum_probs=67.3

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      +..++||++||=.|+|+ |..+..+++..+-.+|++++.+++..+.+++    .+-...+..+......      . ...
T Consensus        51 ~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~------~-~~~  122 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWK------Y-SGI  122 (209)
T ss_dssp             CCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGG------T-TTT
T ss_pred             cCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccc------c-ccc
Confidence            47799999999999877 7788889998875589999999987776644    3322222111111110      0 011


Q ss_pred             CCCccEEEEccCCh----HHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSFDCVGFD----KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~d~~g~~----~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...+|+++..+...    ..+..+.+.|+++|+++..-
T Consensus       123 ~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         123 VEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            23577887655432    24667788999999987653

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.0046  Score=49.04  Aligned_cols=79  Identities=16%  Similarity=0.152  Sum_probs=54.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +|+++||+| ++++|.++.+.+...|+ +|+.+++++++.+.+ ++++....+..+-.+.   +.++++.+.. +++|++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~---~~v~~~~~~~-g~iDil   78 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGDW---DATEKALGGI-GPVDLL   78 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCH---HHHHHHHTTC-CCCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCCH---HHHHHHHHHc-CCCeEE
Confidence            578999998 59999999998888999 788888888776544 4454333332222222   2344444433 579999


Q ss_pred             EEccCC
Q 020928          214 FDCVGF  219 (319)
Q Consensus       214 ~d~~g~  219 (319)
                      +++.|.
T Consensus        79 VnnAg~   84 (242)
T d1cyda_          79 VNNAAL   84 (242)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999885

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.86  E-value=0.012  Score=46.57  Aligned_cols=104  Identities=19%  Similarity=0.243  Sum_probs=69.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEee-ccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETA-KVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~-~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +|+++||+| ++++|.+.++-+...|+ +|+.+.+++++.+.+ ++++..... ..+ +..++....+.++.+.. +++|
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~-g~iD   81 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEF-GRLH   81 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHh-CCcc
Confidence            578999998 59999999999999999 788888888765544 456643321 111 22233333444444333 4799


Q ss_pred             EEEEccCCh-------------------------HHHHHHHHhhcCCCEEEEecc
Q 020928          212 VSFDCVGFD-------------------------KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       212 ~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +++++.|..                         ...+..++.+..++.++..+.
T Consensus        82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss  136 (241)
T d2a4ka1          82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS  136 (241)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             Eeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence            999988753                         124556677888888776664

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0011  Score=52.74  Aligned_cols=101  Identities=21%  Similarity=0.196  Sum_probs=68.3

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      ...++++|++||=+|+|. |..+..+++..|+ +|++++.++...+.+++    .|....+.+..  .++.    .+.  
T Consensus        27 ~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~--~d~~----~~~--   96 (245)
T d1nkva_          27 RVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIH--NDAA----GYV--   96 (245)
T ss_dssp             HHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE--SCCT----TCC--
T ss_pred             HHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhh--hHHh----hcc--
Confidence            568999999999999876 6677788888897 89999999987766554    45432111111  1111    111  


Q ss_pred             cCCCccEEEEccC-----C-hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVG-----F-DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+.||.|+-.-.     . ...+..+.+.|+|+|+++...
T Consensus        97 ~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          97 ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            2467998874321     1 346788889999999987653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.86  E-value=0.00092  Score=53.12  Aligned_cols=77  Identities=19%  Similarity=0.237  Sum_probs=50.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      +++++||+| ++++|.++.+.+...|+ +|+.+++++++.+.+..    ...|. ++.++....+.++.+.. +++|+++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~----~~~Dv-~~~~~v~~~~~~~~~~~-g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLFG----VEVDV-TDSDAVDRAFTAVEEHQ-GPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSEE----EECCT-TCHHHHHHHHHHHHHHH-SSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCceE----EEEec-CCHHHHHHHHHHHHHhc-CCceEEE
Confidence            578999998 59999999999999999 78888877654332110    11122 22233444444444433 4799999


Q ss_pred             EccCC
Q 020928          215 DCVGF  219 (319)
Q Consensus       215 d~~g~  219 (319)
                      ++.|.
T Consensus        79 nnAG~   83 (237)
T d1uzma1          79 SNAGL   83 (237)
T ss_dssp             EECSC
T ss_pred             eeecc
Confidence            99886

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.84  E-value=0.0026  Score=51.06  Aligned_cols=82  Identities=22%  Similarity=0.332  Sum_probs=56.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCCCEe-eccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGADET-AKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +|+++||+| ++++|.++.+.+...|+ +|+.+++++++.+ .+++++.... +..+ ++.++....+.+..+.. +++|
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~-g~iD   81 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRW-GSID   81 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHh-CCcc
Confidence            478899998 69999999999989999 7888888877655 4555764332 1111 22334444444444433 4799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus        82 ilVnnAg~   89 (256)
T d1k2wa_          82 ILVNNAAL   89 (256)
T ss_dssp             EEEECCCC
T ss_pred             EEEeeccc
Confidence            99999986

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.83  E-value=0.0019  Score=50.66  Aligned_cols=101  Identities=19%  Similarity=0.229  Sum_probs=67.7

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ++.++++++++||=+|+|. |..+..+++. |. .+++++.+++..+.+++    .+...+-.+..+..+       +. 
T Consensus         8 l~~~~l~~~~rVLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~-------l~-   76 (231)
T d1vl5a_           8 MQIAALKGNEEVLDVATGG-GHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ-------MP-   76 (231)
T ss_dssp             HHHHTCCSCCEEEEETCTT-CHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C-------CC-
T ss_pred             HHhcCCCCcCEEEEecccC-cHHHHHHHHh-CC-EEEEEECCHHHHhhhhhccccccccccccccccccc-------cc-
Confidence            4668999999999999875 7778788765 65 79999999887666644    443322111111111       11 


Q ss_pred             hcCCCccEEEEccC-----Ch-HHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFDCVG-----FD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d~~g-----~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...+.+|+|+..-.     .+ ..+..+.+.|+|+|+++...
T Consensus        77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            01356999975433     12 46788999999999998764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.83  E-value=0.003  Score=50.48  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=55.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCC-C--EeeccC-CCCcchhHHHHHhhhhcCCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGA-D--ETAKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~-~--~v~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      +|+++||+| ++++|.+..+.+...|+ +|+.+++++++.+.+.+ ++. .  ..+..+ .+.++....+.++.+.. ++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~   82 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF-GP   82 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHh-CC
Confidence            578899998 69999999998888999 68888888877665543 432 1  122222 22233344444444443 47


Q ss_pred             ccEEEEccCCh
Q 020928          210 IDVSFDCVGFD  220 (319)
Q Consensus       210 ~d~v~d~~g~~  220 (319)
                      +|+++++.|..
T Consensus        83 iDiLVnnAg~~   93 (251)
T d1zk4a1          83 VSTLVNNAGIA   93 (251)
T ss_dssp             CCEEEECCCCC
T ss_pred             ceEEEeccccc
Confidence            99999999873

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0031  Score=50.51  Aligned_cols=83  Identities=14%  Similarity=0.282  Sum_probs=54.7

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCE-eeccC-CCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADE-TAKVS-TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~-v~~~~-~~~~~~~~~i~~~~~~~~~  208 (319)
                      +|+++||+| ++++|.+..+.+...|+ .|+.+++++++.+.+    ++.|... .+..+ ++.++....+.++.+.. +
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~-g   87 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-G   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            578899998 69999999998888999 688888887765543    3344322 22222 22233334444444433 4


Q ss_pred             CccEEEEccCCh
Q 020928          209 GIDVSFDCVGFD  220 (319)
Q Consensus       209 ~~d~v~d~~g~~  220 (319)
                      ++|+++++.|..
T Consensus        88 ~iDilvnnAG~~   99 (255)
T d1fmca_          88 KVDILVNNAGGG   99 (255)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CCCEeeeCCcCC
Confidence            799999998863

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0052  Score=49.68  Aligned_cols=103  Identities=21%  Similarity=0.366  Sum_probs=64.0

Q ss_pred             CCeE-EEEC-CCHHHHHHHH-HHHHcCCCeEEEecCChhHHHHHH----HcCCC-EeeccC-CCCcchhHHHHHhhhhcC
Q 020928          137 ETNV-MIMG-SGPIGLVTLL-AARAFGAPRIIITDVDVQRLSIAR----NLGAD-ETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       137 ~~~v-lI~G-~g~vG~~ai~-la~~~g~~~vv~v~~~~~~~~~~~----~~g~~-~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      |.+| ||+| ++++|+++.+ |++..|. +|+.+++++++.+.+.    +.+.. ..+..+ ++.++......++.+.. 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~-   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY-   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc-
Confidence            6677 5568 5999988776 6666687 7888888888765432    22322 222222 22223333344444433 


Q ss_pred             CCccEEEEccCCh-------------------------HHHHHHHHhhcCCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD-------------------------KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +.+|+++++.|..                         ...+.+++.|++.|+++.+++
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            4799999999862                         123455667788899998864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.73  E-value=0.0095  Score=43.98  Aligned_cols=87  Identities=18%  Similarity=0.184  Sum_probs=60.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC-CEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA-DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +|.|+|+|.+|......++..|. .|++.++++++.+.+++.+. +...+      +    +..     -...|+||-++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~------~----~~~-----~~~~DiIilav   65 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQ------D----LSL-----LQTAKIIFLCT   65 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEES------C----GGG-----GTTCSEEEECS
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeee------e----ccc-----ccccccccccC
Confidence            57899999999988888888898 78899999999999888874 33221      0    111     13678999888


Q ss_pred             CCh---HHHHHHHHhhcCCCEEEEecc
Q 020928          218 GFD---KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       218 g~~---~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ...   +.++.+...+.++..++.++.
T Consensus        66 p~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             cHhhhhhhhhhhhhhcccccceeeccc
Confidence            643   233444445566666666653

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.73  E-value=0.0016  Score=52.11  Aligned_cols=83  Identities=22%  Similarity=0.288  Sum_probs=53.8

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHHcCCCE--eeccC-CCCcchhHHHHHhhhhcC-CCc
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNLGADE--TAKVS-TDIEDVDTDVGKIQNAMG-SGI  210 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~~g~~~--v~~~~-~~~~~~~~~i~~~~~~~~-~~~  210 (319)
                      +++|||+| ++++|.++++.+...|+. .|+.+.+++++.+.+++.....  .+..+ ++.++....+.++.+..+ .++
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            47899998 599999988877777864 5777788888877777754222  22222 222233333444443322 469


Q ss_pred             cEEEEccCC
Q 020928          211 DVSFDCVGF  219 (319)
Q Consensus       211 d~v~d~~g~  219 (319)
                      |+++++.|.
T Consensus        83 dilinnAG~   91 (250)
T d1yo6a1          83 SLLINNAGV   91 (250)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999999985

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.73  E-value=0.0036  Score=50.75  Aligned_cols=82  Identities=20%  Similarity=0.255  Sum_probs=55.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEe-eccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADET-AKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +|+++||+| ++++|.++++.+...|+ .|+.+++++++.+.+ ++++.... +..+ ...++....+.++.+.. +.+|
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g~id   81 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARF-GKID   81 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHh-CCcc
Confidence            588999998 69999999998888999 788888988876544 44553221 1111 22233334444444333 5799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus        82 ilvnnAG~   89 (276)
T d1bdba_          82 TLIPNAGI   89 (276)
T ss_dssp             EEECCCCC
T ss_pred             cccccccc
Confidence            99999873

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0022  Score=50.46  Aligned_cols=106  Identities=9%  Similarity=-0.057  Sum_probs=68.4

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC-Eee------------ccCCCCcch-hH
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD-ETA------------KVSTDIEDV-DT  197 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~-~v~------------~~~~~~~~~-~~  197 (319)
                      ..++++.+||..|+|. |..+..||+ .|+ .|+++|.|++..+.+++.... ...            ......-++ ..
T Consensus        41 l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  117 (229)
T d2bzga1          41 LKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCC  117 (229)
T ss_dssp             HTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred             cCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEc
Confidence            5678999999999888 888888887 588 799999999998877663221 110            000000000 00


Q ss_pred             HHHHhhhhcCCCccEEEEccCC--------hHHHHHHHHhhcCCCEEEEec
Q 020928          198 DVGKIQNAMGSGIDVSFDCVGF--------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       198 ~i~~~~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+..+.......+|+|+++..-        ...+..+.++|+|+|+++...
T Consensus       118 d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         118 SIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             CGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            1112222234578999986532        235678899999999977654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.72  E-value=0.0043  Score=48.96  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      +++++||+| ++++|.++.+.+...|+ +|+.++++++.   +++.+...+. .     |+.+.+..+.+.. +.+|+++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~---l~~~~~~~~~-~-----Dv~~~~~~~~~~~-g~iD~lV   71 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVV-C-----DLRKDLDLLFEKV-KEVDILV   71 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEE-C-----CTTTCHHHHHHHS-CCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHH---HHhcCCcEEE-c-----chHHHHHHHHHHh-CCCcEEE
Confidence            478999998 69999999999999999 78888887654   4455533321 1     1122233333333 4799999


Q ss_pred             EccCCh
Q 020928          215 DCVGFD  220 (319)
Q Consensus       215 d~~g~~  220 (319)
                      ++.|..
T Consensus        72 nnAG~~   77 (234)
T d1o5ia_          72 LNAGGP   77 (234)
T ss_dssp             ECCCCC
T ss_pred             eccccc
Confidence            998863

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.70  E-value=0.014  Score=43.31  Aligned_cols=93  Identities=23%  Similarity=0.200  Sum_probs=65.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHHcCC-CEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNLGA-DETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +|+|+|+|.+|...+.-++..|.. +|++.+++++..+.+++.+. +....   ....       .   .....|+|+-|
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~---~~~~-------~---~~~~~dlIila   69 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTT---SIAK-------V---EDFSPDFVMLS   69 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEES---CGGG-------G---GGTCCSEEEEC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhh---hhhh-------h---hcccccccccc
Confidence            689999999999998888888853 68899999999999999885 33221   1000       0   12367999988


Q ss_pred             cCChH---HHHHHHHhhcCCCEEEEecccCC
Q 020928          217 VGFDK---TMSTALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       217 ~g~~~---~~~~~~~~l~~~G~~v~~g~~~~  244 (319)
                      +....   .+..+.+.+.++..++.++....
T Consensus        70 ~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~  100 (171)
T d2g5ca2          70 SPVRTFREIAKKLSYILSEDATVTDQGSVKG  100 (171)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCEEEECCSCCT
T ss_pred             CCchhhhhhhhhhhccccccccccccccccH
Confidence            88542   34455667787777777775443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.70  E-value=0.0034  Score=47.59  Aligned_cols=101  Identities=19%  Similarity=0.215  Sum_probs=66.5

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~~  203 (319)
                      +...+++++++||=+|+|. |..++.+|+. +. +|++++.+++..+.+++    .|.. .+..+.   .+..+..   .
T Consensus        26 l~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~---gda~~~~---~   96 (186)
T d1l3ia_          26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME---GDAPEAL---C   96 (186)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE---SCHHHHH---T
T ss_pred             HHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEE---Cchhhcc---c
Confidence            3557899999999998766 6666777765 43 89999999987777654    5532 221111   1222221   1


Q ss_pred             hhcCCCccEEEEccCC---hHHHHHHHHhhcCCCEEEEec
Q 020928          204 NAMGSGIDVSFDCVGF---DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g  240 (319)
                        ....+|.|+-....   .+.++.+.+.|+++|+++...
T Consensus        97 --~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_          97 --KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             --TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --ccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEe
Confidence              23579998865433   246777888999999987653

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.0056  Score=46.22  Aligned_cols=50  Identities=10%  Similarity=0.093  Sum_probs=39.2

Q ss_pred             HHHHhcCC-CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHH
Q 020928          127 HACRRANV-GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI  176 (319)
Q Consensus       127 ~~l~~~~~-~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~  176 (319)
                      .+++..+. -.+.+|+|+|+|+++.+++..+...|++.+.++.+++++.+.
T Consensus         7 ~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~   57 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDK   57 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHH
T ss_pred             HHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHH
Confidence            34554333 367899999999999999998888999889999888765543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.016  Score=48.07  Aligned_cols=106  Identities=16%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             HHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc-----------CC--CEe--eccCC
Q 020928          126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL-----------GA--DET--AKVST  190 (319)
Q Consensus       126 ~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~-----------g~--~~v--~~~~~  190 (319)
                      .+.++..++++++++|=+|+|. |..++++|+..++..+++++.+++..+.+++.           |.  ..+  +.-+.
T Consensus       141 ~~~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         141 AQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            3456778999999999999887 88999999999987899999999877666532           21  111  11111


Q ss_pred             CCcchhHHHHHhhhhcCCCccEEEEc-cC-Ch---HHHHHHHHhhcCCCEEEEec
Q 020928          191 DIEDVDTDVGKIQNAMGSGIDVSFDC-VG-FD---KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       191 ~~~~~~~~i~~~~~~~~~~~d~v~d~-~g-~~---~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+.++.+.   +     ..+|+|+-. .. .+   ..+..+++.|++||+++...
T Consensus       220 ~~~~~~~~---~-----~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         220 LSEEWRER---I-----ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             TSHHHHHH---H-----HHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccccc---c-----CcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            11111111   1     135777632 11 12   24566777899999998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.65  E-value=0.0034  Score=49.56  Aligned_cols=99  Identities=18%  Similarity=0.259  Sum_probs=59.9

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhH-HHHHhhhh-cCCCccEE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDT-DVGKIQNA-MGSGIDVS  213 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-~i~~~~~~-~~~~~d~v  213 (319)
                      +.+|||+| ++++|.+.++.+...|+ +|+.++++++...     ........+....+... ........ ..+.+|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhcc-----cccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            35789998 59999999999889999 6888887664321     11111111111111111 11111111 24679999


Q ss_pred             EEccCCh--------------------------HHHHHHHHhhcCCCEEEEecc
Q 020928          214 FDCVGFD--------------------------KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       214 ~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      +++.|..                          ...+..++.|+++|+++.++.
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS  129 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGA  129 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEecc
Confidence            9998851                          023556678888999999875

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.63  E-value=0.0092  Score=44.41  Aligned_cols=97  Identities=13%  Similarity=0.101  Sum_probs=62.6

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +++|+|+|+|.+|..+++.+...|. .|++++++.++.+.+.+-...........  +.........    ...|.++.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~~--~~~~~~~~~i----~~~~~~i~~   74 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDV--NDDAALDAEV----AKHDLVISL   74 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCT--TCHHHHHHHH----TTSSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhcccccccccccc--cchhhhHhhh----hccceeEee
Confidence            5789999999999999998888898 79999999998887766332222221111  1111221211    356788877


Q ss_pred             cCChHHHHHHHHhhcCCCEEEEec
Q 020928          217 VGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       217 ~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ............++..+..++...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          75 IPYTFHATVIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             SCGGGHHHHHHHHHHHTCEEECSS
T ss_pred             ccchhhhHHHHHHHhhccceeecc
Confidence            776545555555666666666544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.62  E-value=0.0097  Score=48.16  Aligned_cols=101  Identities=14%  Similarity=0.177  Sum_probs=67.9

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCE-eeccCCCCcchhHHHHHhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADE-TAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~-v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ....++++.+||=+|+|. |..+..+++..|+ .|++++.++...+.+++    .|... +-....   ++    .++. 
T Consensus        61 ~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~---d~----~~l~-  130 (282)
T d2o57a1          61 MTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG---SF----LEIP-  130 (282)
T ss_dssp             HTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC---CT----TSCS-
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccc---cc----cccc-
Confidence            347899999999999886 7788889988888 79999999987766654    34321 111111   11    0111 


Q ss_pred             hcCCCccEEEEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          205 AMGSGIDVSFDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...+.+|+|+-.-.-      ...+..+.+.|+|+|+++...
T Consensus       131 ~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         131 CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence            023569998753221      246788999999999988764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.007  Score=49.52  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=53.8

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHc--------CCCEe-eccC-CCCcchhHHHHHh
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNL--------GADET-AKVS-TDIEDVDTDVGKI  202 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~--------g~~~v-~~~~-~~~~~~~~~i~~~  202 (319)
                      =+|+++||+| ++++|.++++.+...|+ +|+.+++++++.+.+ +++        +.... +..+ ++.++....+.++
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            3678999998 69999999998888999 788888888765533 222        11111 1111 2223333444444


Q ss_pred             hhhcCCCccEEEEccCC
Q 020928          203 QNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~  219 (319)
                      .+.. +++|+++++.|.
T Consensus        89 ~~~~-G~iDiLVnnAg~  104 (297)
T d1yxma1          89 LDTF-GKINFLVNNGGG  104 (297)
T ss_dssp             HHHH-SCCCEEEECCCC
T ss_pred             HHHh-CCeEEEEeeccc
Confidence            4433 479999999886

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.62  E-value=0.006  Score=43.36  Aligned_cols=92  Identities=10%  Similarity=0.159  Sum_probs=61.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +++|+|.|.+|..+++.+...|. .|++++.++++.+.+++.+...++ -+..+++.   +.+.   .-...|.++-+++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~-gd~~~~~~---l~~a---~i~~a~~vi~~~~   73 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVI-ANATEENE---LLSL---GIRNFEYVIVAIG   73 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEE-CCTTCTTH---HHHH---TGGGCSEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCccee-eecccchh---hhcc---CCccccEEEEEcC
Confidence            57888999999999999999998 689999999999988887754433 23333333   2222   1235788888887


Q ss_pred             ChHHH---HHHHHhhcCCCEEEE
Q 020928          219 FDKTM---STALNATRPGGKVCL  238 (319)
Q Consensus       219 ~~~~~---~~~~~~l~~~G~~v~  238 (319)
                      .....   -.....+.+..+++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          74 ANIQASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             chHHhHHHHHHHHHHcCCCcEEe
Confidence            64222   222334445555554

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.59  E-value=0.005  Score=48.28  Aligned_cols=103  Identities=14%  Similarity=0.136  Sum_probs=69.2

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      ++...++||++||=.|+|+ |..+..+|+..|.+ +|++++.+++..+.+++.    +....+..+....+   .   ..
T Consensus        66 l~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~---~---~~  138 (227)
T d1g8aa_          66 LKNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE---E---YR  138 (227)
T ss_dssp             CCCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG---G---GT
T ss_pred             ccccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcc---c---cc
Confidence            3457799999999999888 88999999988643 799999999887777653    21111221111111   1   11


Q ss_pred             hhcCCCccEEEEccCCh----HHHHHHHHhhcCCCEEEEe
Q 020928          204 NAMGSGIDVSFDCVGFD----KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~~----~~~~~~~~~l~~~G~~v~~  239 (319)
                      . ....+|+++..+..+    ..+..+.+.|+++|+++.+
T Consensus       139 ~-~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         139 A-LVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             T-TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             c-cccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            1 124688887765543    2467778899999998765

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.58  E-value=0.0039  Score=50.39  Aligned_cols=82  Identities=26%  Similarity=0.321  Sum_probs=54.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCC--CEe--eccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGA--DET--AKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~--~~v--~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      +|+++||+| ++++|.+.++.+...|+ +|+.+++++++.+.+.+    .+.  ..+  +..+ ++.++....+.++.+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            468889998 69999999998888999 78888898887665433    222  112  2112 2223333444444443


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +++|+++++.|.
T Consensus        83 ~-g~iDilvnnAG~   95 (272)
T d1xkqa_          83 F-GKIDVLVNNAGA   95 (272)
T ss_dssp             H-SCCCEEEECCCC
T ss_pred             h-CCceEEEeCCcc
Confidence            3 579999999875

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.57  E-value=0.006  Score=48.85  Aligned_cols=104  Identities=21%  Similarity=0.300  Sum_probs=67.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cC-CCEeec--cC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LG-ADETAK--VS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g-~~~v~~--~~-~~~~~~~~~i~~~~~~~  206 (319)
                      +|+++||+| ++++|.++.+.+...|+ +|+.+++++++.+.+.+    .+ -..++.  .+ ++.++....+.++.+..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            468899998 69999999999999999 78888888877654422    12 112221  11 23334444444444433


Q ss_pred             CCCccEEEEccCCh--------------------------HHHHHHHHhh--cCCCEEEEecc
Q 020928          207 GSGIDVSFDCVGFD--------------------------KTMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~--------------------------~~~~~~~~~l--~~~G~~v~~g~  241 (319)
                       +++|+++++.|..                          ...+.+.+.|  +.+|+++.+++
T Consensus        82 -G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS  143 (258)
T d1iy8a_          82 -GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTAS  143 (258)
T ss_dssp             -SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             -CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCccccc
Confidence             4799999998742                          0234444555  46799999875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.56  E-value=0.013  Score=46.88  Aligned_cols=104  Identities=20%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC-hhHHHHH-----HHcCCCEe-eccC-CCCcchhHHHHHhhhhc
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD-VQRLSIA-----RNLGADET-AKVS-TDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~-~~~~~~~-----~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~  206 (319)
                      +|+++||+| ++++|.+..+.+...|+ +|+.++++ ++..+.+     ++.|.... +..+ ++.++..+.+.++.+..
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            578899998 69999999998888999 67777765 3433322     22343322 1111 22333444444444433


Q ss_pred             CCCccEEEEccCCh-------------------------HHHHHHHHhhc--CCCEEEEecc
Q 020928          207 GSGIDVSFDCVGFD-------------------------KTMSTALNATR--PGGKVCLIGL  241 (319)
Q Consensus       207 ~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~  241 (319)
                       +++|+++++.|..                         ...+.+++.|.  .+|+++.+++
T Consensus        82 -G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS  142 (260)
T d1x1ta1          82 -GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIAS  142 (260)
T ss_dssp             -SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             -CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccc
Confidence             4799999999863                         12345566663  4689998874

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.56  E-value=0.0072  Score=48.22  Aligned_cols=82  Identities=17%  Similarity=0.316  Sum_probs=52.0

Q ss_pred             CCCeEEEECC-C--HHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEeeccCC-CCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVST-DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~-g--~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~-~~~~~~~~i~~~~~~~~  207 (319)
                      +|+++||+|+ |  ++|.+..+.+...|+ +|+..+++++..+.++    +.+....+..+- +.++....+.++.+.. 
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF-   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhc-
Confidence            5789999985 5  699999998888899 6777777765444333    233333333222 2233333444444433 


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus        85 g~iDilVnnag~   96 (256)
T d1ulua_          85 GGLDYLVHAIAF   96 (256)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            479999998875

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.56  E-value=0.0065  Score=49.11  Aligned_cols=82  Identities=22%  Similarity=0.308  Sum_probs=54.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCC--CEe--eccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGA--DET--AKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~--~~v--~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      +|+++||+| ++++|.+.++.+...|+ +|+.+++++++.+.+.    +.+.  ..+  +..+ ++.++....+.++.+.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            578899998 69999999998888999 7888889887765443    2332  122  1112 2223333444444443


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +.+|+++++.|.
T Consensus        82 ~-G~iDilVnnAG~   94 (274)
T d1xhla_          82 F-GKIDILVNNAGA   94 (274)
T ss_dssp             H-SCCCEEEECCCC
T ss_pred             c-CCceEEEeeccc
Confidence            3 479999999874

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=0.022  Score=48.39  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=70.5

Q ss_pred             HHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC-----------C--CE-eeccCC
Q 020928          125 GVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-----------A--DE-TAKVST  190 (319)
Q Consensus       125 a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g-----------~--~~-v~~~~~  190 (319)
                      ..+.+++.++++++++|=+|+|. |..++++|+..|+.++++++.++...+.+++.-           .  .. ......
T Consensus       205 i~~Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         205 LSDVYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHhCCCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            45567889999999998899987 999999999999878999999998777665421           0  00 010001


Q ss_pred             CCcchhHHHHHhhhhcCCCccEEEEc-c-CCh---HHHHHHHHhhcCCCEEEEec
Q 020928          191 DIEDVDTDVGKIQNAMGSGIDVSFDC-V-GFD---KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       191 ~~~~~~~~i~~~~~~~~~~~d~v~d~-~-g~~---~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...+ .......    -..+|+++-. . -.+   ..+..+++.|++||+++...
T Consensus       284 ~f~~-~~~~d~~----~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         284 SFVD-NNRVAEL----IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             CSTT-CHHHHHH----GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             chhh-ccccccc----cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            0000 0011111    1346777642 1 112   34667888999999999764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.51  E-value=0.011  Score=47.26  Aligned_cols=82  Identities=16%  Similarity=0.275  Sum_probs=53.4

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEe-eccC-CCCcchhHHHHHhhhhcCCC
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADET-AKVS-TDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~  209 (319)
                      |+.+||+| ++++|.+..+.+...|+ +|+.+++++++.+.+    ++.+.... +..+ ++.++....+.++.+.. ++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY-GP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-CS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHh-CC
Confidence            56678888 69999999998888999 688888888765543    33443221 1112 22334444444444433 57


Q ss_pred             ccEEEEccCCh
Q 020928          210 IDVSFDCVGFD  220 (319)
Q Consensus       210 ~d~v~d~~g~~  220 (319)
                      +|+++++.|..
T Consensus        80 iDilVnnAG~~   90 (257)
T d2rhca1          80 VDVLVNNAGRP   90 (257)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEeccccc
Confidence            99999998863

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.45  E-value=0.006  Score=48.91  Aligned_cols=82  Identities=16%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-----HHHHcCCCEe-eccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-----IARNLGADET-AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-----~~~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +|+++||+| ++++|.++++.+...|+ +|+.+++++++.+     +.++.|.... +..+ ++.++....+.++.+. .
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~-~   85 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD-L   85 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH-h
Confidence            478899998 69999999998888999 6888877765433     2233453321 2112 2233444444444443 3


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +++|+++++.|.
T Consensus        86 g~iDilVnnAg~   97 (260)
T d1h5qa_          86 GPISGLIANAGV   97 (260)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCcEecccccc
Confidence            579999999875

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.43  E-value=0.015  Score=46.06  Aligned_cols=101  Identities=18%  Similarity=0.239  Sum_probs=62.5

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHHH----HHcCCCEe-eccC-CCCcchhHHHHHhhhhcCCCc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSIA----RNLGADET-AKVS-TDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~~----~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      .+||+| ++++|.+..+.+...|+ +|+.. .++++..+.+    ++.|.... +..+ .+.++....+.++.+.. +++
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~i   80 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW-GTI   80 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHS-SCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHc-CCC
Confidence            467777 69999999998888999 45554 5565554433    33443221 1112 22234444444444433 579


Q ss_pred             cEEEEccCCh-------------------------HHHHHHHHhh--cCCCEEEEecc
Q 020928          211 DVSFDCVGFD-------------------------KTMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       211 d~v~d~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      |+++++.|..                         ...+.+++.|  +.+|+++.++.
T Consensus        81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS  138 (244)
T d1edoa_          81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIAS  138 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence            9999998863                         1345566666  56799999875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.38  E-value=0.0064  Score=48.83  Aligned_cols=82  Identities=23%  Similarity=0.282  Sum_probs=52.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCC--Ee--eccC-CCCcchhHHHHHhhhh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGAD--ET--AKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~--~v--~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      +|+.+||+| ++++|.+.++.+...|+ .|+.+++++++.+.+.    +.+..  .+  +..+ ++.++....+.+..+.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            567888888 69999999998888999 7888889887765443    23321  12  1112 2223333444444433


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +++|+++++.|.
T Consensus        83 ~-g~iDilvnnAG~   95 (264)
T d1spxa_          83 F-GKLDILVNNAGA   95 (264)
T ss_dssp             H-SCCCEEEECCC-
T ss_pred             h-CCCCEeeccccc
Confidence            3 579999999874

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.34  E-value=0.0072  Score=48.44  Aligned_cols=83  Identities=18%  Similarity=0.220  Sum_probs=52.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh-HHH----HHHHcCCCEe-eccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ-RLS----IARNLGADET-AKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~-~~~----~~~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +|+++||+| ++++|.+.++.+...|+ +|+.++++++ ..+    .+++.+.... +..+ ++.++....+.++.+.. 
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~-   83 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF-   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh-
Confidence            578899998 69999999988888999 6777776643 322    3344553322 1112 22333334444444433 


Q ss_pred             CCccEEEEccCCh
Q 020928          208 SGIDVSFDCVGFD  220 (319)
Q Consensus       208 ~~~d~v~d~~g~~  220 (319)
                      +++|+++++.|..
T Consensus        84 G~iDiLVnnAG~~   96 (261)
T d1geea_          84 GKLDVMINNAGLE   96 (261)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEeeccceec
Confidence            4799999998873

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.33  E-value=0.014  Score=45.15  Aligned_cols=95  Identities=15%  Similarity=0.171  Sum_probs=62.5

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      .++++.+||-+|+|. |..++.+++. |. .|+++|.+++..+.+++    .+...... .....       ++. ....
T Consensus        34 ~l~~~~~ILDiGcG~-G~~~~~la~~-~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~-~~d~~-------~l~-~~~~  101 (226)
T d1ve3a1          34 YMKKRGKVLDLACGV-GGFSFLLEDY-GF-EVVGVDISEDMIRKAREYAKSRESNVEFI-VGDAR-------KLS-FEDK  101 (226)
T ss_dssp             SCCSCCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCCCEEE-ECCTT-------SCC-SCTT
T ss_pred             hcCCCCEEEEECCCc-chhhhhHhhh-hc-ccccccccccchhhhhhhhcccccccccc-ccccc-------ccc-ccCc
Confidence            467889999999887 8888888874 76 79999999988877765    23221111 11111       111 1235


Q ss_pred             CccEEEEccCC-----h---HHHHHHHHhhcCCCEEEEe
Q 020928          209 GIDVSFDCVGF-----D---KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       209 ~~d~v~d~~g~-----~---~~~~~~~~~l~~~G~~v~~  239 (319)
                      .+|+|+-...-     .   ..+..+.+.|+|+|+++..
T Consensus       102 ~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         102 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            68988754331     1   2477888999999998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.27  E-value=0.018  Score=42.79  Aligned_cols=80  Identities=16%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             HHHhcC-CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCC-EeeccCCCCcchhHHHHHhhh
Q 020928          128 ACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGAD-ETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       128 ~l~~~~-~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~-~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      +++..+ ..++.+|+|+|+|+.+.+++..+...+ .++.++.|+.++.+.+.+ ++.. .+....     +       ..
T Consensus         8 ~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~-----~-------~~   74 (171)
T d1p77a1           8 DLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYGNIQAVS-----M-------DS   74 (171)
T ss_dssp             HHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGSCEEEEE-----G-------GG
T ss_pred             HHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhccccchhh-----h-------cc
Confidence            344433 447889999999999999998777655 589999999888665543 3311 111110     0       00


Q ss_pred             hcCCCccEEEEccCCh
Q 020928          205 AMGSGIDVSFDCVGFD  220 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~  220 (319)
                      ..-..+|++++|++..
T Consensus        75 ~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          75 IPLQTYDLVINATSAG   90 (171)
T ss_dssp             CCCSCCSEEEECCCC-
T ss_pred             ccccccceeeeccccc
Confidence            0135789999998853

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.25  E-value=0.017  Score=45.89  Aligned_cols=79  Identities=22%  Similarity=0.308  Sum_probs=51.2

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEe-eccC-CCCcchhHHHHHhhhhcCCCcc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADET-AKVS-TDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .+||+| ++++|.+....+...|+ .|+.+++++++.+.+    ++.|.... +..+ ++.++....+.++.+.. +++|
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD   80 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL-GGFD   80 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT-TCCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHh-CCcc
Confidence            358888 69999999988888899 788888988776544    33443221 1112 22333344444444433 5799


Q ss_pred             EEEEccCC
Q 020928          212 VSFDCVGF  219 (319)
Q Consensus       212 ~v~d~~g~  219 (319)
                      +++++.|.
T Consensus        81 ilVnnAG~   88 (255)
T d1gega_          81 VIVNNAGV   88 (255)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999886

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.24  E-value=0.039  Score=43.31  Aligned_cols=102  Identities=18%  Similarity=0.197  Sum_probs=64.0

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCC------eEEEecCChhHHHHHH----HcCCCE-eeccC-CCCcchhHHHHHhhhh
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAP------RIIITDVDVQRLSIAR----NLGADE-TAKVS-TDIEDVDTDVGKIQNA  205 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~------~vv~v~~~~~~~~~~~----~~g~~~-v~~~~-~~~~~~~~~i~~~~~~  205 (319)
                      .+||+| ++++|.++...+...|++      .++..++++++.+.+.    +.|... .+..+ ++.++....+.++.+.
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            367888 599999998887778885      3777788887765443    234322 12112 2233444444444443


Q ss_pred             cCCCccEEEEccCCh-------------------------HHHHHHHHhh--cCCCEEEEecc
Q 020928          206 MGSGIDVSFDCVGFD-------------------------KTMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      . +.+|+++++.|..                         ...+.+++.|  +.+|+++.+++
T Consensus        83 ~-g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS  144 (240)
T d2bd0a1          83 Y-GHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITS  144 (240)
T ss_dssp             T-SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             c-CCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEec
Confidence            3 4799999999863                         1345566666  45789998874

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.18  E-value=0.015  Score=45.46  Aligned_cols=103  Identities=10%  Similarity=0.065  Sum_probs=67.1

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC----CCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG----ADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      +...++||++||=.|+|. |..+..+|+...-..|++++.++...+.+++.-    ....+..+.....   .   ... 
T Consensus        68 ~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~---~---~~~-  139 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ---E---YAN-  139 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG---G---GTT-
T ss_pred             HhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCc---c---ccc-
Confidence            456799999999999887 888999999754448999999998887776632    1111211111111   0   111 


Q ss_pred             cCCCccEEEEccCCh----HHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVGFD----KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~----~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+++......    ..+..+.+.|+++|+++..-
T Consensus       140 ~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         140 IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            123466677665542    24667778999999987653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.046  Score=39.85  Aligned_cols=103  Identities=21%  Similarity=0.277  Sum_probs=72.1

Q ss_pred             HHHHHHh-c-CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHh
Q 020928          125 GVHACRR-A-NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       125 a~~~l~~-~-~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      ++.++.+ . ..-.|++++|+|-|-+|....+.++.+|+ +|++++..+-+.-.+.--|. .+..           +.+.
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~-~v~~-----------~~~a   76 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGY-EVTT-----------MDEA   76 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC-EECC-----------HHHH
T ss_pred             HHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCce-Eeee-----------hhhh
Confidence            4556543 3 45689999999999999999999999999 89999888765333332232 2211           1111


Q ss_pred             hhhcCCCccEEEEccCChH-HHHHHHHhhcCCCEEEEecccCC
Q 020928          203 QNAMGSGIDVSFDCVGFDK-TMSTALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~-~~~~~~~~l~~~G~~v~~g~~~~  244 (319)
                          -...|+++-+.|+.. .-.+.++.|+++..+...|....
T Consensus        77 ----~~~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd~  115 (163)
T d1li4a1          77 ----CQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDV  115 (163)
T ss_dssp             ----TTTCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSSSTT
T ss_pred             ----hhhccEEEecCCCccchhHHHHHhccCCeEEEEeccccc
Confidence                235789999999853 34577889999998887775443

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0041  Score=47.83  Aligned_cols=96  Identities=24%  Similarity=0.253  Sum_probs=59.2

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .++|+|+| +|.+|..++..+...|. .|.++.+++++.......+... +.-+-  .+. +.+.+..    .+.|+||.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~~-~~gD~--~d~-~~l~~al----~~~d~vi~   73 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHV-VVGDV--LQA-ADVDKTV----AGQDAVIV   73 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEE-EESCT--TSH-HHHHHHH----TTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhccccccccccc-ccccc--cch-hhHHHHh----cCCCEEEE
Confidence            46899998 59999999998888898 7888888887754332233322 22222  122 2233222    36899999


Q ss_pred             ccCCh----------HHHHHHHHhhcCCC--EEEEecc
Q 020928          216 CVGFD----------KTMSTALNATRPGG--KVCLIGL  241 (319)
Q Consensus       216 ~~g~~----------~~~~~~~~~l~~~G--~~v~~g~  241 (319)
                      ++|..          .....+++.++..|  +++.++.
T Consensus        74 ~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          74 LLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence            99853          12334455554443  7777753

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.93  E-value=0.019  Score=46.08  Aligned_cols=82  Identities=15%  Similarity=0.163  Sum_probs=51.5

Q ss_pred             CCCeEEEECC-C--HHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~-g--~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +|+++||+|+ |  ++|.++++.+...|+ .|+.++++++..+.++    +.+...+...+ ....+..+.+.++.+. -
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~   81 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD-L   81 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH-T
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH-c
Confidence            5899999984 5  699999999999999 6777877764333333    22322222222 2223333444444433 3


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +.+|+++.+.|.
T Consensus        82 g~id~lV~nag~   93 (274)
T d2pd4a1          82 GSLDFIVHSVAF   93 (274)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCeEEeeccc
Confidence            579999988875

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.75  E-value=0.01  Score=46.94  Aligned_cols=96  Identities=22%  Similarity=0.241  Sum_probs=65.2

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      .....+++.+||=+|+|. |..++.+++ .|+ .|++++.+++-.+.+++.    +....+. ..   +    +..+.  
T Consensus        35 ~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~-~~---d----~~~l~--  101 (251)
T d1wzna1          35 KEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFL-QG---D----VLEIA--  101 (251)
T ss_dssp             HHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEE-ES---C----GGGCC--
T ss_pred             HHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchhe-eh---h----hhhcc--
Confidence            345677788999999887 888888887 577 799999999888877763    2221111 11   1    11222  


Q ss_pred             cCCCccEEEEccCC------h---HHHHHHHHhhcCCCEEEE
Q 020928          206 MGSGIDVSFDCVGF------D---KTMSTALNATRPGGKVCL  238 (319)
Q Consensus       206 ~~~~~d~v~d~~g~------~---~~~~~~~~~l~~~G~~v~  238 (319)
                      ....+|.|+-..+.      +   ..++.+.++|+|+|.++.
T Consensus       102 ~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            24579998865432      1   357788899999998875

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.73  E-value=0.032  Score=44.25  Aligned_cols=86  Identities=21%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             cCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh----hHHH---HHHHcCCCEe-eccCCC-CcchhHHHHH
Q 020928          132 ANVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV----QRLS---IARNLGADET-AKVSTD-IEDVDTDVGK  201 (319)
Q Consensus       132 ~~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~----~~~~---~~~~~g~~~v-~~~~~~-~~~~~~~i~~  201 (319)
                      -.++|+.++||+| ++++|.+++..+...|++.++.+.++.    ...+   .+++.|.... +..+-. ..+....+..
T Consensus         4 ~~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~   83 (259)
T d2fr1a1           4 DEWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGG   83 (259)
T ss_dssp             CCCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             cccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcc
Confidence            3578999999998 699999999887778986667665543    1222   2334554322 111211 1222222222


Q ss_pred             hhhhcCCCccEEEEccCC
Q 020928          202 IQNAMGSGIDVSFDCVGF  219 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~  219 (319)
                      +.+  ...+|.++.+.|.
T Consensus        84 i~~--~~~i~~vv~~ag~   99 (259)
T d2fr1a1          84 IGD--DVPLSAVFHAAAT   99 (259)
T ss_dssp             SCT--TSCEEEEEECCCC
T ss_pred             ccc--ccccccccccccc
Confidence            222  2468999999886

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.70  E-value=0.081  Score=38.52  Aligned_cols=109  Identities=14%  Similarity=0.220  Sum_probs=70.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|-|+|.|.+|...+.-+...|+ .|++.++++++.+.+++.++...-       +..+    ..    ...|++|-|+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~-------~~~e----~~----~~~d~ii~~v~   65 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAETAS-------TAKA----IA----EQCDVIITMLP   65 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEECS-------SHHH----HH----HHCSEEEECCS
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhhhcc-------cHHH----HH----hCCCeEEEEcC
Confidence            47789999999988887777898 789999999999988887764321       1111    11    24789999998


Q ss_pred             ChHHHHHH-------HHhhcCCCEEEEecccCCcccccch-HHHhcCcEEEEe
Q 020928          219 FDKTMSTA-------LNATRPGGKVCLIGLAKTEMTVALT-PAAAREVDVIGI  263 (319)
Q Consensus       219 ~~~~~~~~-------~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~i~~~  263 (319)
                      .+......       ...++++..++.++........... .+..+++++...
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda  118 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA  118 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC
T ss_pred             CHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecc
Confidence            76554443       4456677777777654333222222 233345555543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.67  E-value=0.017  Score=44.15  Aligned_cols=85  Identities=24%  Similarity=0.293  Sum_probs=60.9

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      -.|.+|+|.|.|.+|..+.+++...|+ +|++.+.++++.+....++...+-.     ++       +   .....|+++
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~~~~-----~~-------~---~~~~~DI~i   88 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAVAL-----ED-------V---LSTPCDVFA   88 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEECCG-----GG-------G---GGCCCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhcccccCc-----cc-------c---ccccceeee
Confidence            377899999999999999999999998 7889999999888888888654311     11       1   134688888


Q ss_pred             EccCChHHHHHHHHhhcCCCEEE
Q 020928          215 DCVGFDKTMSTALNATRPGGKVC  237 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v  237 (319)
                      =|..+...-....+.++  .+++
T Consensus        89 PcA~~~~I~~~~a~~i~--ak~i  109 (201)
T d1c1da1          89 PCAMGGVITTEVARTLD--CSVV  109 (201)
T ss_dssp             ECSCSCCBCHHHHHHCC--CSEE
T ss_pred             cccccccccHHHHhhhh--hhee
Confidence            66655434444555553  3444

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=95.66  E-value=0.081  Score=38.04  Aligned_cols=101  Identities=19%  Similarity=0.228  Sum_probs=63.6

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHc--CCCeEEEecCChh---HHHHHHHcCCCEeeccCCCCcc-hhHHH----------
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAF--GAPRIIITDVDVQ---RLSIARNLGADETAKVSTDIED-VDTDV----------  199 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~--g~~~vv~v~~~~~---~~~~~~~~g~~~v~~~~~~~~~-~~~~i----------  199 (319)
                      +++|.|+| +|++|..+.++.+..  .+ +|++.....+   -.+.++++....+...+..... ....+          
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g   80 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAG   80 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEES
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccC
Confidence            37899999 599999999999875  46 5666655444   3445567887776543321110 00000          


Q ss_pred             -HHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          200 -GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       200 -~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                       ..+.+....++|+++.++.|-..+...+..++.+-++..
T Consensus        81 ~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaL  120 (150)
T d1r0ka2          81 ADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVAL  120 (150)
T ss_dssp             HHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEE
T ss_pred             ccchheecccccceeeeecCchhHHHHHHHHHhcCCEEEE
Confidence             001111134689999998887778888888888876543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0062  Score=40.35  Aligned_cols=35  Identities=29%  Similarity=0.305  Sum_probs=30.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      ++++|+|+|.|..|+++++++...|+ .|.+.+..+
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~   38 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRM   38 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            46789999999999999999999998 677777644

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.02  Score=47.03  Aligned_cols=96  Identities=16%  Similarity=0.205  Sum_probs=55.7

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHH---HHHcCCCE-eeccCCCCcchhHHHHHhhhhcC
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSI---ARNLGADE-TAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~---~~~~g~~~-v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      ..+.++++||-+|+|. |.+++.+|+ .|+++|++++.++.....   .++.+... +......       +.++.. ..
T Consensus        31 ~~~~~~~~VLDiGcG~-G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~-------~~~l~~-~~  100 (311)
T d2fyta1          31 PHIFKDKVVLDVGCGT-GILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK-------IEEVHL-PV  100 (311)
T ss_dssp             GGGTTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESC-------TTTSCC-SC
T ss_pred             cccCCcCEEEEECCCC-CHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEee-------HHHhcC-cc
Confidence            4667899999999874 777776666 588799999988864432   23334221 1111111       111111 23


Q ss_pred             CCccEEEEccCC-----h----HHHHHHHHhhcCCCEEE
Q 020928          208 SGIDVSFDCVGF-----D----KTMSTALNATRPGGKVC  237 (319)
Q Consensus       208 ~~~d~v~d~~g~-----~----~~~~~~~~~l~~~G~~v  237 (319)
                      ..+|+|+.-.-+     +    ......-+.|+|+|+++
T Consensus       101 ~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         101 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            579999752221     1    12333445789999886

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.59  E-value=0.022  Score=47.11  Aligned_cols=105  Identities=20%  Similarity=0.180  Sum_probs=65.2

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      ..+++|++||=.++|. |..++.+|+ .|+..|+.++.+++..+.+++    .|....+..  ...|..+.+..+.. .+
T Consensus       141 ~~~~~g~~VLDl~~g~-G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~--~~~d~~~~~~~~~~-~~  215 (324)
T d2as0a2         141 KWVQPGDRVLDVFTYT-GGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKF--IVGSAFEEMEKLQK-KG  215 (324)
T ss_dssp             GGCCTTCEEEETTCTT-THHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEE--EESCHHHHHHHHHH-TT
T ss_pred             hhcCCCCeeecccCcc-cchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCcccee--eechhhhhhHHHHh-cc
Confidence            3468899998876533 334445554 477789999999998887765    444221111  12344444444332 35


Q ss_pred             CCccEEEEccCC---------------hHHHHHHHHhhcCCCEEEEecc
Q 020928          208 SGIDVSFDCVGF---------------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~---------------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ..||+|+--...               ..++..+.+.|+++|.++.+..
T Consensus       216 ~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         216 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             CCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            679998742221               1246667789999999988754

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.52  E-value=0.064  Score=39.66  Aligned_cols=104  Identities=18%  Similarity=0.142  Sum_probs=62.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHcC-CCeEEEe-cCC-hhHHHHHHHcCCCEeeccCCCCcchhHHH----HHhhhhcCCCcc
Q 020928          139 NVMIMGSGPIGLVTLLAARAFG-APRIIIT-DVD-VQRLSIARNLGADETAKVSTDIEDVDTDV----GKIQNAMGSGID  211 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g-~~~vv~v-~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~i----~~~~~~~~~~~d  211 (319)
                      +|.|.|-|-+|...+..+.... . .++.+ +.+ ......+.+.+.+...........+...-    ..+.+ .-.++|
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vD   81 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLND-LLEKVD   81 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHH-HHTTCS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhh-hhccCC
Confidence            6889999999998888776543 4 45555 333 34445566666444321111000100000    00000 013799


Q ss_pred             EEEEccCChHHHHHHHHhhcCCCEEEEecccCC
Q 020928          212 VSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       212 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  244 (319)
                      +|+||.|.-...+.+..++..+-+.+..+.+..
T Consensus        82 vViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~  114 (172)
T d2czca2          82 IIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA  114 (172)
T ss_dssp             EEEECCSTTHHHHHHHHHHHHTCEEEECTTSCG
T ss_pred             EEEECCCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence            999999987667778889999989888876544

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.035  Score=43.95  Aligned_cols=82  Identities=17%  Similarity=0.233  Sum_probs=49.6

Q ss_pred             CCCeEEEECC-C--HHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccC-CCCcchhHHHHHhhhhcC
Q 020928          136 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       136 ~~~~vlI~G~-g--~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +|+++||+|+ |  ++|.+++..+...|+ +|+.+.++++..+.+++    .+.......+ ....+......+..+ ..
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   81 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGK-VW   81 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHT-TC
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhh-cc
Confidence            6889999984 5  688988888888999 57777777665444433    3433332222 222222222222222 34


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      ...|+.+++.+.
T Consensus        82 ~~~d~~v~~a~~   93 (258)
T d1qsga_          82 PKFDGFVHSIGF   93 (258)
T ss_dssp             SSEEEEEECCCC
T ss_pred             cccceEEEeecc
Confidence            678999988755

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=95.41  E-value=0.21  Score=40.07  Aligned_cols=112  Identities=15%  Similarity=0.157  Sum_probs=71.8

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEe--cCChhHHHHHHHcCCCEeeccCCC---------------
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVSTD---------------  191 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v--~~~~~~~~~~~~~g~~~v~~~~~~---------------  191 (319)
                      .+...++++.+|+...+|+.|+++...|+.+|.+.++++  ..++.+.+.++.+|+..++.....               
T Consensus        52 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~  131 (292)
T d2bhsa1          52 EKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANR  131 (292)
T ss_dssp             HHTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHH
T ss_pred             HHhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhcccc
Confidence            345667777776666799999999999999999655554  346678889999998754321100               


Q ss_pred             ----------Ccc-hhH----HHHHhhhhcCCCccEEEEccCChHHHHHHHH---hhcCCCEEEEec
Q 020928          192 ----------IED-VDT----DVGKIQNAMGSGIDVSFDCVGFDKTMSTALN---ATRPGGKVCLIG  240 (319)
Q Consensus       192 ----------~~~-~~~----~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~---~l~~~G~~v~~g  240 (319)
                                +.+ +..    .-.++.+..+..+|.++-++|+..++.-+.+   .+.+..+++.+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Ve  198 (292)
T d2bhsa1         132 GEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQ  198 (292)
T ss_dssp             TSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred             ccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEec
Confidence                      000 000    1123434445569999999988766554444   446667777665

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.41  E-value=0.13  Score=36.95  Aligned_cols=82  Identities=23%  Similarity=0.365  Sum_probs=53.8

Q ss_pred             eEEEECCCHHHHHHHH-HHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          139 NVMIMGSGPIGLVTLL-AARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~-la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +|.++|+|.+|.+.++ |++. |...+.+.++++++.+.+++ ++....-+    .+.       +     ...|+||=+
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~-~~~~i~v~~r~~~~~~~l~~~~~~~~~~~----~~~-------v-----~~~Div~la   64 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRGAEKRERLEKELGVETSAT----LPE-------L-----HSDDVLILA   64 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CSCEEEEECSSHHHHHHHHHHTCCEEESS----CCC-------C-----CTTSEEEEC
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCCcEEEEeCChhHHHHhhhhcccccccc----ccc-------c-----cccceEEEe
Confidence            5788899999998877 5554 53489999999998877655 56433211    111       1     236888877


Q ss_pred             cCChHHHHHHHHhhcCCCEEEE
Q 020928          217 VGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       217 ~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                      +- +..+....+-+++.+.++.
T Consensus        65 vk-P~~~~~v~~~l~~~~~~vi   85 (152)
T d1yqga2          65 VK-PQDMEAACKNIRTNGALVL   85 (152)
T ss_dssp             SC-HHHHHHHHTTCCCTTCEEE
T ss_pred             cC-HHHHHHhHHHHhhcccEEe
Confidence            76 4456666666666655543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.047  Score=42.96  Aligned_cols=46  Identities=24%  Similarity=0.279  Sum_probs=36.6

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHH-HHHHcCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLS-IARNLGA  182 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~-~~~~~g~  182 (319)
                      +|+.+||+| ++++|.+.++.+...|+ +|+.+++++++.+ .+++++.
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~   51 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN   51 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            688999998 69999999999999999 6888887776554 4455654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.36  E-value=0.019  Score=46.85  Aligned_cols=102  Identities=13%  Similarity=0.081  Sum_probs=65.4

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC--EeeccC---CCCcchhHHHHHhhhhcCC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD--ETAKVS---TDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~--~v~~~~---~~~~~~~~~i~~~~~~~~~  208 (319)
                      .+..++|||+|.|. |..+-.+++.....+|.+++-.++-.+.++++-..  ...+-.   -...|....++    ....
T Consensus       104 ~~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~----~~~~  178 (312)
T d2b2ca1         104 HPDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK----NHKN  178 (312)
T ss_dssp             SSSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH----HCTT
T ss_pred             CCCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHH----hCCC
Confidence            35668999998766 55666788877777899999999999999885321  111000   00123333332    2456


Q ss_pred             CccEEEEccCC----------hHHHHHHHHhhcCCCEEEEec
Q 020928          209 GIDVSFDCVGF----------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       209 ~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+|+||--...          .+.++.+.++|+++|.++.-.
T Consensus       179 ~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         179 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            89998743222          135778888999999888654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.30  E-value=0.071  Score=40.38  Aligned_cols=88  Identities=18%  Similarity=0.175  Sum_probs=57.3

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|..++++++.+|. +|++.+...+....  ..+..    .    .+    +.++.    ...|+++-
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~~~~--~~~~~----~----~~----l~~~l----~~sDii~~  102 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPELE--KKGYY----V----DS----LDDLY----KQADVISL  102 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHH--HTTCB----C----SC----HHHHH----HHCSEEEE
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCcccccccc--cceee----e----cc----ccccc----cccccccc
Confidence            47899999999999999999999999 78888765443222  11110    0    12    22222    13678776


Q ss_pred             ccCChH-----HHHHHHHhhcCCCEEEEeccc
Q 020928          216 CVGFDK-----TMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       216 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      ++.-..     .-...++.|+++..++.++..
T Consensus       103 ~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG  134 (197)
T d1j4aa1         103 HVPDVPANVHMINDESIAKMKQDVVIVNVSRG  134 (197)
T ss_dssp             CSCCCGGGTTCBSHHHHHHSCTTEEEEECSCG
T ss_pred             cCCccccccccccHHHHhhhCCccEEEecCch
Confidence            654321     124567888999888887653

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.24  Score=41.05  Aligned_cols=113  Identities=21%  Similarity=0.297  Sum_probs=73.8

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEe--cCChhHHHHHHHcCCCEeeccCC----------------
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVST----------------  190 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v--~~~~~~~~~~~~~g~~~v~~~~~----------------  190 (319)
                      .+...++++..|+...+|+.|.++...|+.+|.+.++++  ..++++.+.++.+|+..+..-..                
T Consensus        89 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~  168 (355)
T d1jbqa_          89 ERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRL  168 (355)
T ss_dssp             HHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHH
T ss_pred             HHcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHH
Confidence            345667777777767789999999999999999655555  34668899999999876542100                


Q ss_pred             ------------CCc--ch----hHHHHHhhhhcCCCccEEEEccCChHHHHHHH---HhhcCCCEEEEecc
Q 020928          191 ------------DIE--DV----DTDVGKIQNAMGSGIDVSFDCVGFDKTMSTAL---NATRPGGKVCLIGL  241 (319)
Q Consensus       191 ------------~~~--~~----~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~---~~l~~~G~~v~~g~  241 (319)
                                  ...  ++    .....++.++.+..+|.++-++|+..++..+.   +...+.-+++.+..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep  240 (355)
T d1jbqa_         169 KNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDP  240 (355)
T ss_dssp             HHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             HHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecc
Confidence                        000  00    11112343444556999999999875554444   44566778877653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.21  E-value=0.021  Score=43.06  Aligned_cols=39  Identities=15%  Similarity=0.353  Sum_probs=33.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  177 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~  177 (319)
                      ++|.|+|+|.+|...+.++...|. .|+..+.+++..+..
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence            579999999999999988888898 688999988776544

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.19  E-value=0.15  Score=36.98  Aligned_cols=94  Identities=22%  Similarity=0.282  Sum_probs=53.4

Q ss_pred             CeEEEECCCHHHH-HHHHHHHHcCCCeEEEe-cCChh--HHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          138 TNVMIMGSGPIGL-VTLLAARAFGAPRIIIT-DVDVQ--RLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       138 ~~vlI~G~g~vG~-~ai~la~~~g~~~vv~v-~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      -++.|+|+|.+|. ..+++++....-.++.+ +++.+  ...+.++++.....       +..+.+.+..  ...++|+|
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~-------~~~d~l~~~~--~~~~iDiV   75 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY-------AGVEGLIKLP--EFADIDFV   75 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES-------SHHHHHHHSG--GGGGEEEE
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc-------cceeeeeecc--cccccCEE
Confidence            4789999999997 56678776543244444 44443  45677788754421       1111111111  13469999


Q ss_pred             EEccCChHHHHHH--HHhhcCCCEEEEec
Q 020928          214 FDCVGFDKTMSTA--LNATRPGGKVCLIG  240 (319)
Q Consensus       214 ~d~~g~~~~~~~~--~~~l~~~G~~v~~g  240 (319)
                      |+++.........  .+.+..|-.++...
T Consensus        76 f~ATpag~h~~~~~~~~aa~~G~~VID~s  104 (157)
T d1nvmb1          76 FDATSASAHVQNEALLRQAKPGIRLIDLT  104 (157)
T ss_dssp             EECSCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EEcCCchhHHHhHHHHHHHHcCCEEEEcc
Confidence            9998754444433  33455555555544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.19  E-value=0.027  Score=46.29  Aligned_cols=96  Identities=17%  Similarity=0.228  Sum_probs=56.5

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHH---HHHHcCCCE-eeccCCCCcchhHHHHHhhhhcC
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLS---IARNLGADE-TAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~---~~~~~g~~~-v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      ..+.+|++||-+|+|. |.+++.+|+ .|+++|++++.++....   .++..+... +........+       +. ...
T Consensus        29 ~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~-------~~-~~~   98 (316)
T d1oria_          29 RHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEE-------VE-LPV   98 (316)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTT-------CC-CSS
T ss_pred             cccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHH-------cc-ccc
Confidence            3466899999999876 777776666 68878999998775322   223334222 2111111111       11 123


Q ss_pred             CCccEEEEccCC---------hHHHHHHHHhhcCCCEEE
Q 020928          208 SGIDVSFDCVGF---------DKTMSTALNATRPGGKVC  237 (319)
Q Consensus       208 ~~~d~v~d~~g~---------~~~~~~~~~~l~~~G~~v  237 (319)
                      ..+|+|+.....         +..+...-+.|+|+|+++
T Consensus        99 ~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          99 EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            578998653222         124455667999999876

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.19  E-value=0.01  Score=44.88  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=30.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +++|+|+|+|+.|+.++..++++|++.|.++++++
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            67999999999999999999999996576776654

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.18  E-value=0.034  Score=43.87  Aligned_cols=81  Identities=16%  Similarity=0.256  Sum_probs=48.3

Q ss_pred             CeEEEEC-CCHHHHHHHHHH-H--HcCCCeEEEecCChhHHHHHHH----cCCCEeeccCC-CCcchhHHHHHhhh-hcC
Q 020928          138 TNVMIMG-SGPIGLVTLLAA-R--AFGAPRIIITDVDVQRLSIARN----LGADETAKVST-DIEDVDTDVGKIQN-AMG  207 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la-~--~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~-~~~~~~~~i~~~~~-~~~  207 (319)
                      ++|||+| ++++|.++++.+ +  ..|+ .|+.+.+++++.+.+++    .+-...+..+- +.++....+.++.. ...
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   81 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKD   81 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhc
Confidence            4799998 599999887644 3  3577 68888888876555443    22222222222 22333344444322 124


Q ss_pred             CCccEEEEccCC
Q 020928          208 SGIDVSFDCVGF  219 (319)
Q Consensus       208 ~~~d~v~d~~g~  219 (319)
                      +.+|+++++.|.
T Consensus        82 ~~iDiLvnNAg~   93 (248)
T d1snya_          82 QGLNVLFNNAGI   93 (248)
T ss_dssp             GCCSEEEECCCC
T ss_pred             CCcceEEeeccc
Confidence            579999999875

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.17  E-value=0.013  Score=47.58  Aligned_cols=102  Identities=16%  Similarity=0.171  Sum_probs=62.8

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc----CCCEee-ccCCCCcchhHHHHHhhhhc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL----GADETA-KVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~----g~~~v~-~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .+.+++.+||-+|+|. |..++.||+. |+ .|++++.+++-.+.+++.    +..... .......++...-..+  ..
T Consensus        52 l~~~~~~~vLD~GcG~-G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  126 (292)
T d1xvaa_          52 LRQHGCHRVLDVACGT-GVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV--PA  126 (292)
T ss_dssp             HHHTTCCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS--CC
T ss_pred             hhhcCCCEEEEecCCC-cHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc--CC
Confidence            3445678999999887 8888888875 87 799999999988777652    111100 0000011111111111  12


Q ss_pred             CCCccEEEEccCC--------------hHHHHHHHHhhcCCCEEEE
Q 020928          207 GSGIDVSFDCVGF--------------DKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       207 ~~~~d~v~d~~g~--------------~~~~~~~~~~l~~~G~~v~  238 (319)
                      ...+|.|+.....              ...++.+.+.|+|+|.++.
T Consensus       127 ~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         127 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            4579998854321              0257889999999999876

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.13  E-value=0.016  Score=47.04  Aligned_cols=102  Identities=23%  Similarity=0.288  Sum_probs=66.0

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC--EeeccCC----CCcchhHHHHHhhhhcC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD--ETAKVST----DIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~--~v~~~~~----~~~~~~~~i~~~~~~~~  207 (319)
                      .+..++|||+|.|. |.++-.+++..+..++.+++-.++-.+.++++...  ...+ +.    ...|-...+.   ...+
T Consensus        78 ~~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~-~~r~~i~~~Da~~~l~---~~~~  152 (290)
T d1xj5a_          78 IPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE-DPRVNLVIGDGVAFLK---NAAE  152 (290)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG-STTEEEEESCHHHHHH---TSCT
T ss_pred             CCCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhcccc-CCCcEEEEccHHHHHh---hccc
Confidence            45668999998665 55677888887877899999999998988885310  0000 00    0112222332   2234


Q ss_pred             CCccEEE-EccC---------ChHHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSF-DCVG---------FDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~-d~~g---------~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+|+|| |...         +.+.++.+.++|+++|.++.=.
T Consensus       153 ~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         153 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            5799875 4332         1246889999999999887643

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.07  E-value=0.01  Score=48.32  Aligned_cols=101  Identities=17%  Similarity=0.186  Sum_probs=63.7

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeecc-CC----CCcchhHHHHHhhhhcCCC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKV-ST----DIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~-~~----~~~~~~~~i~~~~~~~~~~  209 (319)
                      +..++|||+|.|. |..+-.+++..+...|.+++-+++-.+.++++.......+ +.    ...|....+    +.....
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l----~~~~~~  162 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYV----RKFKNE  162 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHG----GGCSSC
T ss_pred             CCCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHH----hcCCCC
Confidence            4568999997655 5566677887777789999999998888887431100000 00    012333333    234568


Q ss_pred             ccEEE-EccC----------ChHHHHHHHHhhcCCCEEEEec
Q 020928          210 IDVSF-DCVG----------FDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       210 ~d~v~-d~~g----------~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +|+|| |+..          +.+.++.+.++|+++|.++.-.
T Consensus       163 yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         163 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            99986 3321          1246788999999999887643

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.03  E-value=0.1  Score=39.31  Aligned_cols=97  Identities=19%  Similarity=0.268  Sum_probs=60.7

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcC
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      +...++.+||-+|+|. |..+..++++ |. .|++++.+++..+.+++    .+.+.+.....   ++    .++  ...
T Consensus        26 ~~~~~~grvLDiGcG~-G~~~~~la~~-g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~---d~----~~~--~~~   93 (198)
T d2i6ga1          26 AKVVAPGRTLDLGCGN-GRNSLYLAAN-GY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLV---DL----NTL--TFD   93 (198)
T ss_dssp             HTTSCSCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEEC---CT----TTC--CCC
T ss_pred             cccCCCCcEEEECCCC-CHHHHHHHHH-hh-hhccccCcHHHHHHHHHHhhhccccchhhhhe---ec----ccc--ccc
Confidence            3333445899999884 8888888874 77 79999999988776654    34332111000   11    001  123


Q ss_pred             CCccEEEEccCC-----h---HHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSFDCVGF-----D---KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~d~~g~-----~---~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..||+|+....-     +   ..+..+.++|+++|.++...
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1          94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            568998853321     1   35677888899999988764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.01  E-value=0.01  Score=47.78  Aligned_cols=100  Identities=15%  Similarity=0.181  Sum_probs=66.1

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC-----C--CEeeccCCCCcchhHHHHHhhhhc
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-----A--DETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g-----~--~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .++.++|||+|.|. |..+-.+++..+..+|.+++-.++-.+.++++.     +  +.-+.+  ...|....++    ..
T Consensus        73 ~~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i--~~~D~~~~l~----~~  145 (274)
T d1iy9a_          73 HPNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDV--QVDDGFMHIA----KS  145 (274)
T ss_dssp             SSSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEE--EESCSHHHHH----TC
T ss_pred             cCCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEE--EechHHHHHh----hc
Confidence            45668999998766 667777888777778999999999888888753     1  000000  0123233332    23


Q ss_pred             CCCccEEE-EccC---------ChHHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSF-DCVG---------FDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~-d~~g---------~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +..+|+|+ |...         +.+.++.+.++|+++|.++.=.
T Consensus       146 ~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            56899985 3322         2356889999999999887543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.067  Score=42.64  Aligned_cols=97  Identities=19%  Similarity=0.119  Sum_probs=66.3

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      ...++.+||=+|+|. |..+..+++...-..++++|.++...+.+++......+.. .+..+       +. .....+|+
T Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~-~d~~~-------l~-~~~~sfD~  150 (268)
T d1p91a_          81 LDDKATAVLDIGCGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCV-ASSHR-------LP-FSDTSMDA  150 (268)
T ss_dssp             SCTTCCEEEEETCTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEE-CCTTS-------CS-BCTTCEEE
T ss_pred             cCCCCCEEEEeCCCC-cHHHHHHHHHCCCCEEEEecchHhhhhhhhccccccccee-eehhh-------cc-CCCCCEEE
Confidence            356778899899877 7788888887633379999999998888877443221111 11111       11 12456999


Q ss_pred             EEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          213 SFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       213 v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      |+.... +..++++.+.|+|+|+++...
T Consensus       151 v~~~~~-~~~~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         151 IIRIYA-PCKAEELARVVKPGGWVITAT  177 (268)
T ss_dssp             EEEESC-CCCHHHHHHHEEEEEEEEEEE
T ss_pred             EeecCC-HHHHHHHHHHhCCCcEEEEEe
Confidence            986544 447889999999999998764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.97  E-value=0.28  Score=35.50  Aligned_cols=90  Identities=16%  Similarity=0.144  Sum_probs=61.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      ++|.++|.|.+|...+.-+...|+ .|.+.++++++.+.+.+.+.....       +..+    .    -...|+++-++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~-------~~~e----~----~~~~diii~~v   65 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGASAAR-------SARD----A----VQGADVVISML   65 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEECS-------SHHH----H----HTSCSEEEECC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhccccc-------hhhh----h----ccccCeeeecc
Confidence            368899999999987776666788 789999999999888887754321       1111    1    13578888888


Q ss_pred             CChHHHHHH-------HHhhcCCCEEEEecccC
Q 020928          218 GFDKTMSTA-------LNATRPGGKVCLIGLAK  243 (319)
Q Consensus       218 g~~~~~~~~-------~~~l~~~G~~v~~g~~~  243 (319)
                      .........       ...+.++-.++.++...
T Consensus        66 ~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~   98 (162)
T d3cuma2          66 PASQHVEGLYLDDDGLLAHIAPGTLVLECSTIA   98 (162)
T ss_dssp             SCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCC
T ss_pred             cchhhHHHHHhccccccccCCCCCEEEECCCCC
Confidence            876444433       33566666777666543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.95  E-value=0.069  Score=40.24  Aligned_cols=99  Identities=11%  Similarity=0.246  Sum_probs=62.9

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC--EeeccCCCCcchhHHHHHh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD--ETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~i~~~  202 (319)
                      ++.....++++||=+|+|. |..++.+++. +. .|.+++.++...+.+++    .+..  .+.....   |..+.   +
T Consensus        45 i~~l~~~~~~~VLDiGcG~-G~~~~~la~~-~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~---d~~~~---~  115 (194)
T d1dusa_          45 VENVVVDKDDDILDLGCGY-GVIGIALADE-VK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHS---DLYEN---V  115 (194)
T ss_dssp             HHHCCCCTTCEEEEETCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC---STTTT---C
T ss_pred             HHhCCcCCCCeEEEEeecC-ChhHHHHHhh-cc-ccceeeeccccchhHHHHHHHhCCccceEEEEEc---chhhh---h
Confidence            3557788999999998776 6667777763 44 79999999988887764    2221  1111111   11111   1


Q ss_pred             hhhcCCCccEEEEccC---Ch----HHHHHHHHhhcCCCEEEEe
Q 020928          203 QNAMGSGIDVSFDCVG---FD----KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g---~~----~~~~~~~~~l~~~G~~v~~  239 (319)
                         .+..+|+|+-...   +.    ..++.+.+.|+++|+++..
T Consensus       116 ---~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         116 ---KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             ---TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence               2457999986321   22    2467788899999988654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.15  Score=40.98  Aligned_cols=99  Identities=24%  Similarity=0.318  Sum_probs=54.4

Q ss_pred             EEEEC-CCHHHHHHHHHHHHcCCCeEEE--ecCChhH----HHHHHHcCC---C-EeeccC-CCCcchhHHHHHhhhhcC
Q 020928          140 VMIMG-SGPIGLVTLLAARAFGAPRIII--TDVDVQR----LSIARNLGA---D-ETAKVS-TDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       140 vlI~G-~g~vG~~ai~la~~~g~~~vv~--v~~~~~~----~~~~~~~g~---~-~v~~~~-~~~~~~~~~i~~~~~~~~  207 (319)
                      +||+| ++++|.++...+...|++.+.+  ..+..++    .+.++++..   . ..+..+ ++.++....+.++   ..
T Consensus         5 vlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~---~~   81 (285)
T d1jtva_           5 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV---TE   81 (285)
T ss_dssp             EEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC---TT
T ss_pred             EEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc---cc
Confidence            45668 6999999998888889863333  2333222    233344321   1 112222 1222222222222   23


Q ss_pred             CCccEEEEccCCh----------H---------------HHHHHHHhh--cCCCEEEEecc
Q 020928          208 SGIDVSFDCVGFD----------K---------------TMSTALNAT--RPGGKVCLIGL  241 (319)
Q Consensus       208 ~~~d~v~d~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~  241 (319)
                      +.+|+++++.|..          +               ..+..++.|  +.+|+++.+++
T Consensus        82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS  142 (285)
T d1jtva_          82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGS  142 (285)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred             cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEec
Confidence            5799999998763          1               234555666  45689998874

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.013  Score=47.37  Aligned_cols=104  Identities=14%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC--Eeec---cCCCCcchhHHHHHhhhhc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD--ETAK---VSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~--~v~~---~~~~~~~~~~~i~~~~~~~  206 (319)
                      ...+..++|||+|.|. |..+-.+++..+..++.+++-.++-.+.++++...  ....   ..-...|....++    ..
T Consensus        74 ~~~~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~----~~  148 (285)
T d2o07a1          74 CSHPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK----QN  148 (285)
T ss_dssp             TTSSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH----TC
T ss_pred             hhCcCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh----cC
Confidence            3455678999998665 55667778877777899999999998888875310  0000   0000123233332    24


Q ss_pred             CCCccEEE-EccCC---------hHHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSF-DCVGF---------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..++|+|| |....         .+.++.+.+.|+++|.++.=.
T Consensus       149 ~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         149 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            56899986 33221         135788889999999887543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.012  Score=43.28  Aligned_cols=93  Identities=12%  Similarity=0.008  Sum_probs=53.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      +|+|+|+|++|.+....+...|. .|..+++++++.+..+..+............+..+.        -..+|++|-++-
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~D~iii~vk   72 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDF--------LATSDLLLVTLK   72 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHH--------HHTCSEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccccchhhh--------hcccceEEEeec
Confidence            68999999999888888888898 677777766543322221211100000000010111        136899999988


Q ss_pred             ChH---HHHHHHHhhcCCCEEEEec
Q 020928          219 FDK---TMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       219 ~~~---~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...   ..+.+..++.++..++.+.
T Consensus        73 a~~~~~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          73 AWQVSDAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             GGGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred             ccchHHHHHhhccccCcccEEeecc
Confidence            753   2333444556666677664

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.045  Score=45.15  Aligned_cols=96  Identities=18%  Similarity=0.236  Sum_probs=55.1

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhH---HHHHHHcCCCE-eeccCCCCcchhHHHHHhhhhcC
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR---LSIARNLGADE-TAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~---~~~~~~~g~~~-v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      ....++++||-+|+|. |.+++.+|+ .|+++|++++.++.-   .+..++.+... +..+.....+       +. ...
T Consensus        34 ~~~~~~~~VLDlGcGt-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~-------l~-~~~  103 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGT-GILSMFAAK-HGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLED-------VH-LPF  103 (328)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHHH-TCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTT-------SC-CSS
T ss_pred             cccCCcCEEEEeCCCC-CHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhh-------cc-Ccc
Confidence            3456789999999875 666655554 688899999988632   22333444322 2111111111       11 124


Q ss_pred             CCccEEEEccCC---------hHHHHHHHHhhcCCCEEE
Q 020928          208 SGIDVSFDCVGF---------DKTMSTALNATRPGGKVC  237 (319)
Q Consensus       208 ~~~d~v~d~~g~---------~~~~~~~~~~l~~~G~~v  237 (319)
                      ..+|+|+...-.         +..+...-+.|+|+|+++
T Consensus       104 ~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            579998763322         123444557899999875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=94.74  E-value=0.096  Score=40.32  Aligned_cols=97  Identities=18%  Similarity=0.193  Sum_probs=62.3

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHH---cCCCeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhh
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARA---FGAPRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~---~g~~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      .++++.+||-.|+|. |..+..+++.   .++ +|+++|.+++-.+.+++.    +....+....  .+.       ...
T Consensus        36 ~~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~--~d~-------~~~  104 (225)
T d1im8a_          36 FVTADSNVYDLGCSR-GAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILC--NDI-------RHV  104 (225)
T ss_dssp             HCCTTCEEEEESCTT-CHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEEC--SCT-------TTC
T ss_pred             hcCCCCEEEEeccch-hhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhcc--chh-------hcc
Confidence            378999999999876 7777777775   355 899999999988887752    2221111101  111       111


Q ss_pred             cCCCccEEEEccCC--------hHHHHHHHHhhcCCCEEEEec
Q 020928          206 MGSGIDVSFDCVGF--------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 ~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....+|+++-...-        ...++.+.+.|+|+|.++...
T Consensus       105 ~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         105 EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            12355665543221        146888999999999998764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.72  E-value=0.12  Score=37.10  Aligned_cols=85  Identities=12%  Similarity=0.170  Sum_probs=58.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH-HHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA-RNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      ++.++|+|.+|.+.+.-....|. .+++.++++++.+.+ +++|.....       +..+    +.    .+.|+||=|+
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~~-------~~~~----~~----~~~dvIilav   65 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYAM-------SHQD----LI----DQVDLVILGI   65 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBCS-------SHHH----HH----HTCSEEEECS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeeec-------hhhh----hh----hccceeeeec
Confidence            47788999999988875555676 688888888876665 557754321       1111    21    2578999888


Q ss_pred             CChHHHHHHHHhhcCCCEEEEec
Q 020928          218 GFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       218 g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      - +......++.+.++..++.+.
T Consensus        66 k-p~~~~~vl~~l~~~~~iis~~   87 (152)
T d2ahra2          66 K-PQLFETVLKPLHFKQPIISMA   87 (152)
T ss_dssp             C-GGGHHHHHTTSCCCSCEEECC
T ss_pred             c-hHhHHHHhhhcccceeEeccc
Confidence            6 446777778888877776553

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.68  E-value=0.033  Score=44.34  Aligned_cols=97  Identities=16%  Similarity=0.170  Sum_probs=61.5

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCE-eeccCCCCcchhHHHHHhhhhcC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADE-TAKVSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~-v~~~~~~~~~~~~~i~~~~~~~~  207 (319)
                      .+++|++||-.|+|. |..++.+|+. |..+|++++.+++..+.+++    .+... +..+..   |..    ++.  ..
T Consensus       104 ~~~~g~~VlD~~aG~-G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~---D~~----~~~--~~  172 (260)
T d2frna1         104 VAKPDELVVDMFAGI-GHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM---DNR----DFP--GE  172 (260)
T ss_dssp             HCCTTCEEEETTCTT-TTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS---CTT----TCC--CC
T ss_pred             hcCCccEEEECcceE-cHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEc---chH----Hhc--cC
Confidence            378999999987654 5566777776 44489999999998887765    34322 211211   111    111  13


Q ss_pred             CCccEEE-Ecc-CChHHHHHHHHhhcCCCEEEEec
Q 020928          208 SGIDVSF-DCV-GFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       208 ~~~d~v~-d~~-g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ..+|.|+ +.. .+...+..+++.++++|.+....
T Consensus       173 ~~~D~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         173 NIADRILMGYVVRTHEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             SCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEECCCCchHHHHHHHHhhcCCCCEEEEEe
Confidence            4688665 322 33456778889999999876544

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.65  E-value=0.097  Score=39.25  Aligned_cols=91  Identities=18%  Similarity=0.138  Sum_probs=58.7

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+.++.|+|.|.+|....++++.+|. .|+..++........++.+.....       +    +.++.    ...|+|.-
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~~~-------~----l~~~l----~~sD~v~~  106 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWHA-------T----REDMY----PVCDVVTL  106 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEECS-------S----HHHHG----GGCSEEEE
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeeccccccccccccccccC-------C----HHHHH----Hhccchhh
Confidence            57899999999999999999999999 788887765444444444432210       1    11121    24677755


Q ss_pred             ccCChH-----HHHHHHHhhcCCCEEEEeccc
Q 020928          216 CVGFDK-----TMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       216 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      +..-.+     .-...++.|+++..++.++..
T Consensus       107 ~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG  138 (188)
T d2naca1         107 NCPLHPETEHMINDETLKLFKRGAYIVNTARG  138 (188)
T ss_dssp             CSCCCTTTTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred             cccccccchhhhHHHHHHhCCCCCEEEecCch
Confidence            444321     124567788888888877643

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.48  E-value=0.31  Score=35.18  Aligned_cols=103  Identities=20%  Similarity=0.183  Sum_probs=72.6

Q ss_pred             HHHHHHh-cC-CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHh
Q 020928          125 GVHACRR-AN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       125 a~~~l~~-~~-~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      .+.++.+ .+ +=.|++++|.|=|-+|.-..+-+|.+|+ +|++++..+-+.-.+. +.-..+..           +.+.
T Consensus         9 ~~d~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~-mdGf~v~~-----------~~~a   75 (163)
T d1v8ba1           9 LPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAV-MEGFNVVT-----------LDEI   75 (163)
T ss_dssp             HHHHHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHH-TTTCEECC-----------HHHH
T ss_pred             HHHHHHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHH-hcCCccCc-----------hhHc
Confidence            3455533 34 5689999999999999999999999999 8999988885533222 22223221           1111


Q ss_pred             hhhcCCCccEEEEccCChHH-HHHHHHhhcCCCEEEEecccCC
Q 020928          203 QNAMGSGIDVSFDCVGFDKT-MSTALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~G~~v~~g~~~~  244 (319)
                          -...|+++-+.|.... ....++.|+++..+...|-...
T Consensus        76 ----~~~aDi~vTaTGn~~vI~~~h~~~MKdgaIl~N~GHfd~  114 (163)
T d1v8ba1          76 ----VDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDD  114 (163)
T ss_dssp             ----TTTCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred             ----cccCcEEEEcCCCCccccHHHHHHhhCCeEEEeccccch
Confidence                2457999999998753 5677889999998887775443

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.44  E-value=0.082  Score=41.87  Aligned_cols=84  Identities=21%  Similarity=0.355  Sum_probs=49.5

Q ss_pred             CCCCeEEEECC-C--HHHHHHHHHHHHcCCCeEEEecCChhHH-HHH-HHcCCCEe-eccC-CCCcchhHHHHHhhhh--
Q 020928          135 GPETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDVQRL-SIA-RNLGADET-AKVS-TDIEDVDTDVGKIQNA--  205 (319)
Q Consensus       135 ~~~~~vlI~G~-g--~vG~~ai~la~~~g~~~vv~v~~~~~~~-~~~-~~~g~~~v-~~~~-~~~~~~~~~i~~~~~~--  205 (319)
                      =+|+++||+|+ |  ++|.++.+-+...|+ +|+.+.+++++. +.+ ++++.... +..+ ....+.......+.+.  
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~   82 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   82 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence            36789999983 4  599999888888999 577776666553 333 44553221 1111 1222323333333321  


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      ..+.+|+++++.|.
T Consensus        83 ~~~~ld~~i~~ag~   96 (268)
T d2h7ma1          83 AGNKLDGVVHSIGF   96 (268)
T ss_dssp             TTCCEEEEEECCCC
T ss_pred             cCCCcceeeecccc
Confidence            23568999999873

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.037  Score=37.75  Aligned_cols=36  Identities=28%  Similarity=0.511  Sum_probs=31.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhH
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR  173 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~  173 (319)
                      ..+|.|+|+|.+|.+.++-|+.+|+ ++++.+.+++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCCC
Confidence            3569999999999999999999999 78888876654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.29  E-value=0.029  Score=44.24  Aligned_cols=35  Identities=17%  Similarity=0.298  Sum_probs=30.3

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +..++|+|+|+|..|+++...+...|. .|++++++
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~   36 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERS   36 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            356899999999999999999888999 78888764

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=94.27  E-value=0.21  Score=40.51  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=67.4

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEe--cCChhHHHHHHHcCCCEeeccCC----------------
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVST----------------  190 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v--~~~~~~~~~~~~~g~~~v~~~~~----------------  190 (319)
                      .+...+.++++|+...+|+.|.++...|+.+|.+.+|++  ..++.+.+.++.+|+..+.....                
T Consensus        53 ~~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~  132 (310)
T d1y7la1          53 EKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVAS  132 (310)
T ss_dssp             HHTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHh
Confidence            344667787776666789999999999999999755555  34567888888899876642100                


Q ss_pred             ---------CCcchh-------HHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhc
Q 020928          191 ---------DIEDVD-------TDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       191 ---------~~~~~~-------~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  231 (319)
                               ...+..       ..-.++.+..+..+|.++-++|+...+..+...++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk  189 (310)
T d1y7la1         133 DPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIK  189 (310)
T ss_dssp             CTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHH
T ss_pred             hcCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHH
Confidence                     000000       01123334445579999999998766666666553

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.26  E-value=0.2  Score=37.08  Aligned_cols=91  Identities=15%  Similarity=0.177  Sum_probs=57.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHc-CCCeEE-EecCChhHHH-HHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          139 NVMIMGSGPIGLVTLLAARAF-GAPRII-ITDVDVQRLS-IARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~-g~~~vv-~v~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      ++.|+|+|.+|..-++.++.. ++ .++ +.+.++++.+ +.++++.....       .+...++++.+  ...+|+|+-
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~--~~~iD~v~I   72 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPEST-------KIHGSYESLLE--DPEIDALYV   72 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTC-------EEESSHHHHHH--CTTCCEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccce-------eecCcHHHhhh--ccccceeee
Confidence            578899999998877777765 55 455 4466666544 44556532110       01112333333  357999999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEec
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +.......+.+..++..+-. +.+.
T Consensus        73 ~tp~~~h~~~~~~~l~~g~~-v~~E   96 (184)
T d1ydwa1          73 PLPTSLHVEWAIKAAEKGKH-ILLE   96 (184)
T ss_dssp             CCCGGGHHHHHHHHHTTTCE-EEEC
T ss_pred             cccchhhcchhhhhhhccce-eecc
Confidence            99887788888888886644 4444

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.057  Score=40.76  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=34.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  178 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~  178 (319)
                      ++|.|+|+|.+|....+++...|. .|+..+.+++..+.++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHH
Confidence            589999999999999999999998 7999999987665443

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.22  E-value=0.36  Score=35.31  Aligned_cols=101  Identities=18%  Similarity=0.136  Sum_probs=59.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEe-cCC-hhHHHHHHHcCCCEeeccCCCCcchhH-------HHHHhhhhcCCC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIIT-DVD-VQRLSIARNLGADETAKVSTDIEDVDT-------DVGKIQNAMGSG  209 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v-~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~i~~~~~~~~~~  209 (319)
                      +|.|.|-|-+|..+.+.+...+--.++++ +.+ ......+..++.+...........+..       .+..+    -.+
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~----~~~   78 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM----LDE   78 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH----HHT
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh----hcC
Confidence            68899999999999987766552245554 333 233445555554432211110000000       11111    136


Q ss_pred             ccEEEEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          210 IDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       210 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +|+|+||.|.-.....+..++..+-+.+..+.+.
T Consensus        79 vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~  112 (171)
T d1cf2o1          79 ADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEK  112 (171)
T ss_dssp             CSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             CCEEEEccCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            9999999998656667778888888887776543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.036  Score=41.38  Aligned_cols=38  Identities=26%  Similarity=0.467  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      ....+++|+|+|+|+.|+.|...+.+.|. .|...+..+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            34567899999999999999999999998 788887654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.15  E-value=0.015  Score=45.93  Aligned_cols=93  Identities=18%  Similarity=0.197  Sum_probs=60.4

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      ...++.+||=+|+|. |..+..++++ |. .+++++.+++..+.+++    .+...-+. ..   |    +..+.  ...
T Consensus        34 ~~~~~~~vLDiGCG~-G~~~~~l~~~-g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~-~~---d----~~~~~--~~~  100 (246)
T d1y8ca_          34 NNLVFDDYLDLACGT-GNLTENLCPK-FK-NTWAVDLSQEMLSEAENKFRSQGLKPRLA-CQ---D----ISNLN--INR  100 (246)
T ss_dssp             TTCCTTEEEEETCTT-STTHHHHGGG-SS-EEEEECSCHHHHHHHHHHHHHTTCCCEEE-CC---C----GGGCC--CSC
T ss_pred             hCCCCCeEEEEeCcC-CHHHHHHHHh-CC-ccEeeccchhhhhhccccccccCccceee-cc---c----hhhhc--ccc
Confidence            345567899999886 8888888774 76 79999999998777654    23221111 11   2    11121  245


Q ss_pred             CccEEEEccCC------h----HHHHHHHHhhcCCCEEEE
Q 020928          209 GIDVSFDCVGF------D----KTMSTALNATRPGGKVCL  238 (319)
Q Consensus       209 ~~d~v~d~~g~------~----~~~~~~~~~l~~~G~~v~  238 (319)
                      .+|+|+...+.      .    ..++.+.++|+++|.++.
T Consensus       101 ~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             CEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            79999853221      1    256778889999998874

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.11  E-value=0.58  Score=37.46  Aligned_cols=106  Identities=18%  Similarity=0.224  Sum_probs=68.0

Q ss_pred             HHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEe--cCChhHHHHHHHcCCCEeeccC--------------
Q 020928          126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVS--------------  189 (319)
Q Consensus       126 ~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v--~~~~~~~~~~~~~g~~~v~~~~--------------  189 (319)
                      +++++...++++.+++..++|..|.++...++.+|.+.++++  ..++.+...++.+|+..+..-.              
T Consensus        50 ~~a~~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~~~~~~~~~  129 (302)
T d1fcja_          50 WDAEKRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEI  129 (302)
T ss_dssp             HHHHHHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccccccchhhhHHHHH
Confidence            334555677888777767889999999999999998755555  4466788888888876542110              


Q ss_pred             -----------CCCcch-------hHHHHHhhhhcCCCccEEEEccCChHHHHHHHHhhc
Q 020928          190 -----------TDIEDV-------DTDVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       190 -----------~~~~~~-------~~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  231 (319)
                                 ....+.       ...-.++.+..+..+|.+|-++|+..++......++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk  189 (302)
T d1fcja_         130 VASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIK  189 (302)
T ss_dssp             HHTSTTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHH
T ss_pred             HhhhccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeee
Confidence                       000000       001123344445578999999998766665555553

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.11  E-value=0.47  Score=33.76  Aligned_cols=39  Identities=21%  Similarity=0.418  Sum_probs=31.3

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhH
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQR  173 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~  173 (319)
                      ..+.+|.|+|+|.+|..+.+.+...+. +.++-+|..+++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            356789999999999988887777664 468888887766

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.07  E-value=0.088  Score=36.15  Aligned_cols=42  Identities=14%  Similarity=0.166  Sum_probs=34.3

Q ss_pred             HHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          129 CRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       129 l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      ++.....++++++|+|+|.+|+-+.+.++.+|. .+..+.+.+
T Consensus        14 ~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          14 VEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            345667789999999999999999999999998 677776543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=94.06  E-value=0.051  Score=44.62  Aligned_cols=102  Identities=14%  Similarity=0.076  Sum_probs=62.3

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCCC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGSG  209 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~  209 (319)
                      ..+|++||=.++|. |..++++|+  |+..|++++.++...+.+++    .|.+.+-..   ..+..+.++.+.. .+..
T Consensus       143 ~~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i---~~d~~~~~~~~~~-~~~~  215 (318)
T d1wxxa2         143 RFRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVL---EANAFDLLRRLEK-EGER  215 (318)
T ss_dssp             GCCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEE---ESCHHHHHHHHHH-TTCC
T ss_pred             HhCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCccee---eccHHHHhhhhHh-hhcC
Confidence            34688998876544 444556664  34489999999998887764    444322111   1243344444433 3567


Q ss_pred             ccEEEEccC-----C----------hHHHHHHHHhhcCCCEEEEeccc
Q 020928          210 IDVSFDCVG-----F----------DKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       210 ~d~v~d~~g-----~----------~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      ||+|+--..     .          .+++..+.+.|+|||.++.+.-+
T Consensus       216 fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         216 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            999873211     1          12456778899999999887543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=94.02  E-value=0.14  Score=38.50  Aligned_cols=90  Identities=16%  Similarity=0.051  Sum_probs=56.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      |.++.|+|.|.+|....++++.+|. +++..+............+...   +    .+    +.++.    ...|+|.-+
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~---~----~~----l~~ll----~~sD~v~l~  110 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEASYQATF---H----DS----LDSLL----SVSQFFSLN  110 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHHHHTCEE---C----SS----HHHHH----HHCSEEEEC
T ss_pred             ccceEEeecccchHHHHHHHHhhcc-ccccccccccccchhhcccccc---c----CC----HHHHH----hhCCeEEec
Confidence            7899999999999999999999999 6887776544333222222211   0    12    22222    135777654


Q ss_pred             cCC-hH----HHHHHHHhhcCCCEEEEeccc
Q 020928          217 VGF-DK----TMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       217 ~g~-~~----~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      ..- ++    .-...++.|+++..+|.++..
T Consensus       111 ~plt~~T~~li~~~~l~~mk~~a~lIN~sRG  141 (191)
T d1gdha1         111 APSTPETRYFFNKATIKSLPQGAIVVNTARG  141 (191)
T ss_dssp             CCCCTTTTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred             CCCCchHhheecHHHhhCcCCccEEEecCCc
Confidence            432 21    123567788888888877643

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=94.02  E-value=0.028  Score=46.06  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=63.7

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCC---Eeec---cCCCCcchhHHHHHhhhhcC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGAD---ETAK---VSTDIEDVDTDVGKIQNAMG  207 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~---~v~~---~~~~~~~~~~~i~~~~~~~~  207 (319)
                      .+..++|||+|.|. |..+-++++......|.+++-.++-.+.++++-..   ...+   ..-...|....++    ..+
T Consensus        75 ~~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~----~~~  149 (312)
T d1uira_          75 HPEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE----RTE  149 (312)
T ss_dssp             SSCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH----HCC
T ss_pred             CCCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhh----hcC
Confidence            35678999998765 66677777776666899999999988888774210   0000   0000123333333    245


Q ss_pred             CCccEEE-Ec---cC---------ChHHHHHHHHhhcCCCEEEE
Q 020928          208 SGIDVSF-DC---VG---------FDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       208 ~~~d~v~-d~---~g---------~~~~~~~~~~~l~~~G~~v~  238 (319)
                      ..+|+|| |.   .+         +.+.++.+.++|+++|.++.
T Consensus       150 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~  193 (312)
T d1uira_         150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM  193 (312)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred             CcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence            6899985 33   22         12467889999999998775

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.00  E-value=0.059  Score=44.54  Aligned_cols=46  Identities=13%  Similarity=0.143  Sum_probs=36.9

Q ss_pred             CCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH
Q 020928          133 NVGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  179 (319)
Q Consensus       133 ~~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~  179 (319)
                      -+++|++|||+| +|-+|..++..+...|. .|+++.++.++.+.+++
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~~   53 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQK   53 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHHH
Confidence            467899999998 69999999887777898 67787788777665543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.99  E-value=0.12  Score=35.73  Aligned_cols=40  Identities=25%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      ...-+++++++|+|+|.+|+-+++.+..+|. .|..+.+.+
T Consensus        24 ~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          24 KTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            3455677899999999999999999999998 566675543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=93.96  E-value=0.34  Score=37.31  Aligned_cols=106  Identities=15%  Similarity=0.165  Sum_probs=69.7

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh-
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA-  205 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~-  205 (319)
                      .+..+.++||-+|++. |..++.+|+.+.- .++++++.+++..+.+++    .|...-+.+  ...+..+.+.++... 
T Consensus        55 ~~~~~~k~iLEiGT~~-GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~--~~g~a~~~L~~l~~~~  131 (227)
T d1susa1          55 LKLINAKNTMEIGVYT-GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDF--REGPALPVLDEMIKDE  131 (227)
T ss_dssp             HHHHTCCEEEEECCGG-GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEE--EESCHHHHHHHHHHCG
T ss_pred             HHhcCCCcEEEecchh-hhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceee--eehHHHHHHHHHHhcc
Confidence            4455678999999755 7888888887642 289999999987766655    454432222  223445556555432 


Q ss_pred             -cCCCccEEE-EccCCh--HHHHHHHHhhcCCCEEEEec
Q 020928          206 -MGSGIDVSF-DCVGFD--KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       206 -~~~~~d~v~-d~~g~~--~~~~~~~~~l~~~G~~v~~g  240 (319)
                       ..+.||.|| |+--..  ..++.++++|+++|.++.=.
T Consensus       132 ~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         132 KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             GGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred             ccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence             235799986 433322  46788899999999887643

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=93.91  E-value=0.22  Score=36.23  Aligned_cols=129  Identities=13%  Similarity=0.165  Sum_probs=73.5

Q ss_pred             eEEEECCCHHHHH-HHHHHHHc-CCCeEEEecCChhHHHHH-HHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          139 NVMIMGSGPIGLV-TLLAARAF-GAPRIIITDVDVQRLSIA-RNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       139 ~vlI~G~g~vG~~-ai~la~~~-g~~~vv~v~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      +|.|+|+|.+|.- .+...+.. ++ .+++++.++++.+.+ ++++......      ++.    ++.   ..++|+|+-
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~------~~~----~ll---~~~iD~V~I   68 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCT------DYR----DVL---QYGVDAVMI   68 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCS------STT----GGG---GGCCSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhcccccccc------cHH----Hhc---ccccceecc
Confidence            5789999999954 45555554 44 566777777765554 4466543221      221    222   236899999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEecccCCccccc---chH-HHhcCcEE-EEeeccCCCHHHHHHHHHcCCC
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVA---LTP-AAAREVDV-IGIFRYRSTWPLCIEFLRSGKI  282 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~---~~~-~~~~~~~i-~~~~~~~~~~~~~~~~~~~g~~  282 (319)
                      ++......+.+..++..+-. +.+.-+.....-.   +.. ...++..+ .++..+...+.++.+.+..|++
T Consensus        69 ~tp~~~H~~~~~~al~~gk~-V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~~r~~~~~~~~~~~~~~G~i  139 (167)
T d1xeaa1          69 HAATDVHSTLAAFFLHLGIP-TFVDKPLAASAQECENLYELAEKHHQPLYVGFNGFDAMVQDWLQVAAAGKL  139 (167)
T ss_dssp             CSCGGGHHHHHHHHHHTTCC-EEEESCSCSSHHHHHHHHHHHHHTTCCEEEECGTHHHHHHHHHHHHHHTCC
T ss_pred             cccccccccccccccccccc-cccCCCCcCCHHHHHHHHHHHHHcCCEEEEEeCcCCHHHHHHHHHhhcCCC
Confidence            99887778888888887654 4444222111111   111 12233333 3333333346677777788887

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.025  Score=35.75  Aligned_cols=35  Identities=20%  Similarity=0.418  Sum_probs=29.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhH
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR  173 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~  173 (319)
                      ++|.|+|+|.+|++.++-++.+|+ ++.+.+..++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCCC
Confidence            478999999999999999999999 67777765443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.86  E-value=0.7  Score=32.72  Aligned_cols=80  Identities=18%  Similarity=0.111  Sum_probs=51.9

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      .+|.|+| .|.+|......++..|+ .|.+.++.+.........+++.++... ........+.++..... .=.+++|+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~v~~~~~~~~~-~~~iiiD~   86 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSV-PINLTLETIERLKPYLT-ENMLLADL   86 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECS-CGGGHHHHHHHHGGGCC-TTSEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhcccccccc-chhhheeeeeccccccc-CCceEEEe
Confidence            5899999 79999999999999999 688888877655544445666665432 22333344444433222 22477887


Q ss_pred             cCCh
Q 020928          217 VGFD  220 (319)
Q Consensus       217 ~g~~  220 (319)
                      .+..
T Consensus        87 ~Svk   90 (152)
T d2pv7a2          87 TSVK   90 (152)
T ss_dssp             CSCC
T ss_pred             cccC
Confidence            7765

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.78  E-value=0.53  Score=35.48  Aligned_cols=94  Identities=13%  Similarity=0.068  Sum_probs=61.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .||-+|+|. |..++.+|+..--..+++++.++.....+    ++.+.+.+..+..   |.......+   ....+|.|+
T Consensus        32 lvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~---Da~~l~~~~---~~~~~d~v~  104 (204)
T d2fcaa1          32 IHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNI---DADTLTDVF---EPGEVKRVY  104 (204)
T ss_dssp             EEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECC---CGGGHHHHC---CTTSCCEEE
T ss_pred             eEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhccc---chhhhhccc---Cchhhhccc
Confidence            455579888 88999999987545899999988866554    4456654433222   222222112   245578776


Q ss_pred             EccCCh--------------HHHHHHHHhhcCCCEEEEe
Q 020928          215 DCVGFD--------------KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       215 d~~g~~--------------~~~~~~~~~l~~~G~~v~~  239 (319)
                      -....+              +.+..+.+.|+|+|.+...
T Consensus       105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             cccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            544432              5788899999999998764

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.78  E-value=0.12  Score=40.80  Aligned_cols=79  Identities=11%  Similarity=0.075  Sum_probs=45.5

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHH--HHHHH----cCCCEeecc-C-CCCcchhHHHHH----hhhh
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL--SIARN----LGADETAKV-S-TDIEDVDTDVGK----IQNA  205 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~--~~~~~----~g~~~v~~~-~-~~~~~~~~~i~~----~~~~  205 (319)
                      +.||+| ++++|.++...+...|+ .|+.++++.++.  +..++    .+....... . ....+..+.+.+    ..+.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            457778 59999999999999999 677777664432  22322    233332211 1 111122222322    2222


Q ss_pred             cCCCccEEEEccCC
Q 020928          206 MGSGIDVSFDCVGF  219 (319)
Q Consensus       206 ~~~~~d~v~d~~g~  219 (319)
                      . +.+|+++++.|.
T Consensus        82 ~-g~iDilvnnAG~   94 (266)
T d1mxha_          82 F-GRCDVLVNNASA   94 (266)
T ss_dssp             H-SCCCEEEECCCC
T ss_pred             h-CCCCEEEECCcc
Confidence            3 479999999984

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.53  Score=33.57  Aligned_cols=97  Identities=16%  Similarity=0.167  Sum_probs=61.6

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHc--CCCeEEEecCChhH---HHHHHHcCCCEeeccCCCCc-chhH--------------
Q 020928          139 NVMIMG-SGPIGLVTLLAARAF--GAPRIIITDVDVQR---LSIARNLGADETAKVSTDIE-DVDT--------------  197 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~--g~~~vv~v~~~~~~---~~~~~~~g~~~v~~~~~~~~-~~~~--------------  197 (319)
                      +|.|+| +|++|..+..+.+..  .+ +|++.....+-   .+.++++....+...+.... .+..              
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g   81 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG   81 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence            688999 599999999999886  35 56666544432   34556677777665332110 0011              


Q ss_pred             --HHHHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEE
Q 020928          198 --DVGKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCL  238 (319)
Q Consensus       198 --~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  238 (319)
                        .+.++.  ...++|+|+.++.|-+.+...+..++.+-++-.
T Consensus        82 ~~~l~~~~--~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaL  122 (151)
T d1q0qa2          82 QQAACDMA--ALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILL  122 (151)
T ss_dssp             HHHHHHHH--TCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEE
T ss_pred             hHHHHHHh--cCCCCCEEEEecCcccHHHHHHHHHhcCCeEEE
Confidence              111111  124689999999888778888888887766543

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.57  E-value=0.52  Score=34.68  Aligned_cols=98  Identities=15%  Similarity=0.041  Sum_probs=56.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHcC-CCeEEEe-cCCh-hHHHHHHHcCCCEeeccCCCCcch-------hHHHHHhhhhcCC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFG-APRIIIT-DVDV-QRLSIARNLGADETAKVSTDIEDV-------DTDVGKIQNAMGS  208 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g-~~~vv~v-~~~~-~~~~~~~~~g~~~v~~~~~~~~~~-------~~~i~~~~~~~~~  208 (319)
                      +|.|.|.|-+|...++.+.... . .++++ +..+ .....+...+.......+ ....+       ...+..+    ..
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~g~~~~~----~~   76 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQ-SIKKFEESGIPVAGTVEDL----IK   76 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGG-GHHHHHTTTCCCCCCHHHH----HH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCc-cceeccccceecCCchhhh----hh
Confidence            6889999999999999887654 5 55555 3332 333344443422211100 00000       0011111    12


Q ss_pred             CccEEEEccCChHHHHHHHHhhcCCCEEEEeccc
Q 020928          209 GIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       209 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      ++|+|+||.|.-...+.+..++..+-+++..+..
T Consensus        77 ~vDiViecTG~f~~~e~a~~hl~~G~KvIi~~~~  110 (178)
T d1b7go1          77 TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGE  110 (178)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTS
T ss_pred             cCCEEEECCCCcCCHHHHHHHHHcCCEEEEECCC
Confidence            6899999999865566677788777777766543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=93.55  E-value=0.041  Score=44.30  Aligned_cols=98  Identities=16%  Similarity=0.225  Sum_probs=65.3

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHHc----CCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARNL----GADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      .++.++.+||=+|+|. |..+..+++..+. ..|+++|.++...+.+++.    +....+. ..   +.    .++.  .
T Consensus        23 ~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~-~~---d~----~~~~--~   91 (281)
T d2gh1a1          23 WKITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFL-EG---DA----TEIE--L   91 (281)
T ss_dssp             SCCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEE-ES---CT----TTCC--C
T ss_pred             hccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccc-cc---cc----cccc--c
Confidence            3677889999999886 8888888887642 3799999999888877653    3221111 11   11    1111  1


Q ss_pred             CCCccEEEEccC-----C-hHHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSFDCVG-----F-DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ...+|+|+..-.     . ...++.+.+.|+|+|.++...
T Consensus        92 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          92 NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            346999975432     2 136788999999999988654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.51  E-value=0.041  Score=44.20  Aligned_cols=33  Identities=18%  Similarity=0.448  Sum_probs=29.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +++|+|+|+|..|+++...++..|. .|.+++.+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            5789999999999999999999999 78888754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.27  E-value=0.32  Score=34.61  Aligned_cols=31  Identities=19%  Similarity=0.580  Sum_probs=27.2

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEe
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIIT  167 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v  167 (319)
                      .|+++||+|+|.+|.--+..+...|+ .|.++
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVv   42 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLV   42 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            57899999999999999999999999 55555

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=93.26  E-value=0.2  Score=39.37  Aligned_cols=102  Identities=13%  Similarity=-0.010  Sum_probs=66.6

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC-CCEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-ADETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      +....+++.+||=+|+|. |..+.+++..... .|.+++.+++-.+.+++.- ....+.+...  +    +..+.. ...
T Consensus        87 ~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~--d----~~~~~~-~~~  157 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGI-GRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILA--S----METATL-PPN  157 (254)
T ss_dssp             HTSTTCCCSEEEEETCTT-THHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEES--C----GGGCCC-CSS
T ss_pred             hhCCCCCCCeEEEecccC-ChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEc--c----cccccc-CCC
Confidence            445566778899999887 8888888876554 7999999999888888632 2222221111  1    111211 245


Q ss_pred             CccEEEEccCC-----h---HHHHHHHHhhcCCCEEEEec
Q 020928          209 GIDVSFDCVGF-----D---KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       209 ~~d~v~d~~g~-----~---~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+|+|+....-     +   ..+..+.+.|+++|.++...
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            79998764332     1   34677888999999988654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.26  E-value=0.077  Score=39.34  Aligned_cols=41  Identities=20%  Similarity=0.277  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  177 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~  177 (319)
                      -++++|||+|+|+++.+++..+...|  .+.++.++.++.+.+
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~--~i~I~nR~~~ka~~l   56 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEAL   56 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc--ceeeehhhhhHHHHH
Confidence            46789999999999998887665444  788888988876654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.22  E-value=0.74  Score=33.58  Aligned_cols=97  Identities=10%  Similarity=-0.005  Sum_probs=58.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      .+|-++|.|.+|...+.-+...|+ .|++.++++++.+.+.+.++......   .......+...    -...|.++-++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~----~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGTKVL---GAHSLEEMVSK----LKKPRRIILLV   74 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTSSCE---ECSSHHHHHHH----BCSSCEEEECS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcccccccc---chhhhhhhhhh----hcccceEEEec
Confidence            468899999999888887777898 68899999999887776554211000   00111111111    23456666666


Q ss_pred             CChH----HHHHHHHhhcCCCEEEEeccc
Q 020928          218 GFDK----TMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       218 g~~~----~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      ....    ..+.+...++++..++.++..
T Consensus        75 ~~~~~v~~v~~~l~~~~~~g~iiid~sT~  103 (176)
T d2pgda2          75 KAGQAVDNFIEKLVPLLDIGDIIIDGGNS  103 (176)
T ss_dssp             CTTHHHHHHHHHHHHHCCTTCEEEECSCC
T ss_pred             CchHHHHHHHHHHHhccccCcEEEecCcc
Confidence            5532    234455566666667766543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.19  E-value=0.081  Score=36.29  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=32.1

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      .+++.+++|+|+|+|.+|+-+++.++.+|. .|..+.+++
T Consensus        17 ~~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          17 FNIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TTCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             hccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            345667899999999999999999999998 677776543

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.15  E-value=0.79  Score=37.11  Aligned_cols=113  Identities=21%  Similarity=0.209  Sum_probs=72.0

Q ss_pred             HHHhcCCCCCCeEEEE-CCCHHHHHHHHHHHHcCCCeEEEe--cCChhHHHHHHHcCCCEeeccC---------------
Q 020928          128 ACRRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVS---------------  189 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~-G~g~vG~~ai~la~~~g~~~vv~v--~~~~~~~~~~~~~g~~~v~~~~---------------  189 (319)
                      +.++..++++...+|. .+|+.|.++...++.+|.+.++++  ..++.+.+.++.+|+..+..-.               
T Consensus        55 a~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~  134 (320)
T d1z7wa1          55 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEIL  134 (320)
T ss_dssp             HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHH
Confidence            3345667777666665 589999999999999999655544  4467788899999986543110               


Q ss_pred             ----------C-CCc-chh----HHHHHhhhhcCCCccEEEEccCChHHHHHHH---HhhcCCCEEEEec
Q 020928          190 ----------T-DIE-DVD----TDVGKIQNAMGSGIDVSFDCVGFDKTMSTAL---NATRPGGKVCLIG  240 (319)
Q Consensus       190 ----------~-~~~-~~~----~~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~---~~l~~~G~~v~~g  240 (319)
                                . .+. ++.    ....++.+.....+|.++-++|+..++.-++   +...+.-+++.+.
T Consensus       135 ~~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve  204 (320)
T d1z7wa1         135 AKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVE  204 (320)
T ss_dssp             HHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HhCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeeccc
Confidence                      0 000 010    1112334444457999999999876554443   4556677777664

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=93.13  E-value=0.095  Score=40.39  Aligned_cols=95  Identities=15%  Similarity=0.076  Sum_probs=60.0

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      .+..++.+||=+|+|. |..+..+++ .|. .|++++.+++..+.+++...+.+.....   ++    ..+.  ....+|
T Consensus        16 ~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~---~~----~~~~--~~~~fD   83 (225)
T d2p7ia1          16 TPFFRPGNLLELGSFK-GDFTSRLQE-HFN-DITCVEASEEAISHAQGRLKDGITYIHS---RF----EDAQ--LPRRYD   83 (225)
T ss_dssp             GGGCCSSCEEEESCTT-SHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSCSCEEEEES---CG----GGCC--CSSCEE
T ss_pred             hhhCCCCcEEEEeCCC-cHHHHHHHH-cCC-eEEEEeCcHHHhhhhhcccccccccccc---cc----cccc--cccccc
Confidence            4455677899999877 777777765 466 6999999999999988743332211111   11    1111  245799


Q ss_pred             EEEEccCC------h-HHHHHHH-HhhcCCCEEEEe
Q 020928          212 VSFDCVGF------D-KTMSTAL-NATRPGGKVCLI  239 (319)
Q Consensus       212 ~v~d~~g~------~-~~~~~~~-~~l~~~G~~v~~  239 (319)
                      +|+-. +.      + ..+..+. ++|+++|.++..
T Consensus        84 ~I~~~-~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          84 NIVLT-HVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             EEEEE-SCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccccc-ceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence            98742 22      1 2345555 578999988754

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=93.08  E-value=0.13  Score=40.25  Aligned_cols=34  Identities=26%  Similarity=0.296  Sum_probs=29.8

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      -.|.+|+|.|.|.+|..+++++...|+ +|++++.
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD   62 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSD   62 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeec
Confidence            478999999999999999999999999 6776653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.99  E-value=0.25  Score=39.35  Aligned_cols=99  Identities=16%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC-CCE-eec---------cCCCCcchhHHHHHh
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-ADE-TAK---------VSTDIEDVDTDVGKI  202 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g-~~~-v~~---------~~~~~~~~~~~i~~~  202 (319)
                      .++.++|||+|.|. |..+-.+++. ...+|.+++-+++-.+.++++. ... ..+         +.-...|....++  
T Consensus        70 ~~~p~~vLiiG~G~-G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~--  145 (276)
T d1mjfa_          70 HPKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK--  145 (276)
T ss_dssp             SSCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH--
T ss_pred             CCCCceEEEecCCc-hHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh--
Confidence            46678999997655 4455556664 4458899999999988888743 110 000         0000123333332  


Q ss_pred             hhhcCCCccEEE-EccCC---------hHHHHHHHHhhcCCCEEEEe
Q 020928          203 QNAMGSGIDVSF-DCVGF---------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       203 ~~~~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~G~~v~~  239 (319)
                        + ..++|+|| |....         .+.++.+.++|+++|.++.=
T Consensus       146 --~-~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         146 --N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             --H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             --c-cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence              1 46799985 34332         24678899999999988753

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.11  Score=39.82  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=63.8

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCC----CEeeccCCCCcchhHHHHHhhhhcCC
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGA----DETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      ..+++.+||-+|+|. |..+..+++..+. .|.+++.+++-.+.+++.-.    ..+ .+..  .+    +.++.. ...
T Consensus        57 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~-~f~~--~d----~~~~~~-~~~  126 (222)
T d2ex4a1          57 NKTGTSCALDCGAGI-GRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVR-NYFC--CG----LQDFTP-EPD  126 (222)
T ss_dssp             -CCCCSEEEEETCTT-THHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEE-EEEE--CC----GGGCCC-CSS
T ss_pred             CCCCCCEEEEeccCC-CHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccc-cccc--cc----cccccc-ccc
Confidence            456778899999887 8788787766554 89999999999888876432    111 1100  11    111211 245


Q ss_pred             CccEEEEccC-----Ch---HHHHHHHHhhcCCCEEEEec
Q 020928          209 GIDVSFDCVG-----FD---KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       209 ~~d~v~d~~g-----~~---~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+|+|+....     .+   ..+..+.+.|+++|.++...
T Consensus       127 ~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         127 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            7899876322     12   35778888999999998764

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.91  E-value=0.33  Score=33.99  Aligned_cols=29  Identities=21%  Similarity=0.189  Sum_probs=20.6

Q ss_pred             eEEEEC-CCHHHHHHHHHHHH-cCCCeEEEe
Q 020928          139 NVMIMG-SGPIGLVTLLAARA-FGAPRIIIT  167 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~-~g~~~vv~v  167 (319)
                      +|.|.| .|-+|..+++.... .++..+..+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~   31 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAEL   31 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            588999 59999999987665 456333333

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=92.89  E-value=0.14  Score=39.52  Aligned_cols=81  Identities=22%  Similarity=0.226  Sum_probs=54.3

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH-cCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN-LGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      -.|.+|+|.|.|.+|..+++++...|+ ++++++.++.+.+.+.. .|...+-.     .+       +   .....|++
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~~~~~-----~~-------~---~~~~cDIl  100 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGADAVAP-----NA-------I---YGVTCDIF  100 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCEECCG-----GG-------T---TTCCCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCcccCC-----cc-------c---ccccccEe
Confidence            478999999999999999999999999 78888888877665544 55533211     11       1   13457777


Q ss_pred             EEccCChHHHHHHHHhhc
Q 020928          214 FDCVGFDKTMSTALNATR  231 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~  231 (319)
                      +=|..+...-....+.++
T Consensus       101 ~PcA~~~~I~~~~~~~l~  118 (230)
T d1leha1         101 APCALGAVLNDFTIPQLK  118 (230)
T ss_dssp             EECSCSCCBSTTHHHHCC
T ss_pred             cccccccccChHHhhccC
Confidence            766655433333444443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=92.85  E-value=0.12  Score=40.68  Aligned_cols=97  Identities=21%  Similarity=0.196  Sum_probs=60.9

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHhhhhcCC
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      ++++++||=+|+|. |..+..+++. |...|+++|.+++..+.+++    .+.. .+.-...   |.    .......+.
T Consensus        22 ~~~~~~VLDlGCG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~---D~----~~~~~~~~~   92 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ---DS----YGRHMDLGK   92 (252)
T ss_dssp             CCTTCEEEEETCTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEES---CT----TTSCCCCSS
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEc---ch----hhhcccccc
Confidence            67899999999876 6667777775 55579999999998887764    2321 1111111   10    000001245


Q ss_pred             CccEEEEccCCh----------HHHHHHHHhhcCCCEEEEe
Q 020928          209 GIDVSFDCVGFD----------KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       209 ~~d~v~d~~g~~----------~~~~~~~~~l~~~G~~v~~  239 (319)
                      .+|+|+....-.          ..+..+.+.|+++|+++..
T Consensus        93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            799987543321          2456677899999998754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.44  Score=37.05  Aligned_cols=33  Identities=21%  Similarity=0.399  Sum_probs=29.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      ..+|+|+|+|++|..++..+.+.|..++..+|.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            359999999999999999999999988888863

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=92.83  E-value=0.13  Score=40.96  Aligned_cols=36  Identities=11%  Similarity=0.172  Sum_probs=25.3

Q ss_pred             EEEEC-CCHHHHHHHHHHHHcCCCeEEEe-cCChhHHHH
Q 020928          140 VMIMG-SGPIGLVTLLAARAFGAPRIIIT-DVDVQRLSI  176 (319)
Q Consensus       140 vlI~G-~g~vG~~ai~la~~~g~~~vv~v-~~~~~~~~~  176 (319)
                      +||+| ++++|.++.+.+...|++ |+.. .++++..+.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~~~   42 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANA   42 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCCHHHHHH
Confidence            45667 599999999988889994 5544 445554433

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.83  E-value=0.17  Score=38.69  Aligned_cols=73  Identities=16%  Similarity=0.064  Sum_probs=43.9

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+|||+| +|.+|..++..+...|.+ .++...+++++.+.+.. +... +..+.  .+. ..+.+..    .++|.|+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~-~~~d~--~~~-~~~~~~~----~~~d~vi~   74 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADV-FIGDI--TDA-DSINPAF----QGIDALVI   74 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTE-EECCT--TSH-HHHHHHH----TTCSEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEE-EEeee--ccc-ccccccc----ccceeeEE
Confidence            5899998 699999999988888864 35556677766543322 2222 11111  121 1222222    36899998


Q ss_pred             ccCC
Q 020928          216 CVGF  219 (319)
Q Consensus       216 ~~g~  219 (319)
                      +.+.
T Consensus        75 ~a~~   78 (252)
T d2q46a1          75 LTSA   78 (252)
T ss_dssp             CCCC
T ss_pred             EEee
Confidence            8764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.81  E-value=0.097  Score=35.77  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=29.8

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +.+++++|+|+|.+|+-+.+.+..+|. .|..+.+.+
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   55 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAG   55 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             hcCCeEEEECCCccceeeeeeeccccc-EEEEEEecc
Confidence            345799999999999999999999998 676665544

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=92.78  E-value=0.2  Score=40.60  Aligned_cols=75  Identities=23%  Similarity=0.236  Sum_probs=43.3

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC--Ch---hHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccE
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDV--DV---QRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDV  212 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~--~~---~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~  212 (319)
                      +|||+| +|-+|..++..+...|. .|+++++  ..   ++.+.++..+--..+.-+-.  +. +.+.++.+  +.++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~--~~-~~l~~~~~--~~~~d~   75 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIR--NK-NDVTRLIT--KYMPDS   75 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTT--CH-HHHHHHHH--HHCCSE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccC--CH-HHHHHHHH--hcCCce
Confidence            799998 69999999998888898 6777752  12   23333343332222221111  11 12222222  336899


Q ss_pred             EEEccCC
Q 020928          213 SFDCVGF  219 (319)
Q Consensus       213 v~d~~g~  219 (319)
                      ||.+.+.
T Consensus        76 Vih~aa~   82 (338)
T d1orra_          76 CFHLAGQ   82 (338)
T ss_dssp             EEECCCC
T ss_pred             EEeeccc
Confidence            9998764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.2  Score=40.98  Aligned_cols=30  Identities=37%  Similarity=0.462  Sum_probs=25.1

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      +|||+| +|-+|..++..+...|. .|+++++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            589998 69999999998888898 6777753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.64  E-value=0.071  Score=43.33  Aligned_cols=38  Identities=18%  Similarity=0.354  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      ...++++|+|+|+|..|+.+...+...|. .|.+++.++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            45566799999999999999998888898 788887643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.51  E-value=0.088  Score=40.84  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=31.5

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      -+.+++|+|+|+|+.|+.+...++..|. .|.+++.++
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence            4567899999999999999999999999 677776554

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=92.49  E-value=0.99  Score=32.99  Aligned_cols=131  Identities=14%  Similarity=0.090  Sum_probs=72.9

Q ss_pred             eEEEECCCHHHHH-HHHHHHHcCCC-eEE-EecCChhHHHH-HHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          139 NVMIMGSGPIGLV-TLLAARAFGAP-RII-ITDVDVQRLSI-ARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       139 ~vlI~G~g~vG~~-ai~la~~~g~~-~vv-~v~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      ++.|+|+|.+|.- -+...+..+-. .++ +.++++++.+. .++++...+..      ++    +++.+  ...+|.|+
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~------~~----~ell~--~~~id~v~   72 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD------SY----EELLE--SGLVDAVD   72 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES------CH----HHHHH--SSCCSEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee------ee----ecccc--ccccceee
Confidence            6789999999964 35555554322 344 45666766554 45567544321      22    22332  45799999


Q ss_pred             EccCChHHHHHHHHhhcCCCEEEEecccCCccccc---chHH-HhcCcEEE-Eee-cc---CCCHHHHHHHHHcCCC
Q 020928          215 DCVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVA---LTPA-AAREVDVI-GIF-RY---RSTWPLCIEFLRSGKI  282 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~---~~~~-~~~~~~i~-~~~-~~---~~~~~~~~~~~~~g~~  282 (319)
                      -++........+..++..+ .=+.+.-+.....-.   +... -.++..+. ++. ++   ...+..+.+++.+|++
T Consensus        73 I~tp~~~h~~~~~~al~~g-k~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~i  148 (181)
T d1zh8a1          73 LTLPVELNLPFIEKALRKG-VHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKP  148 (181)
T ss_dssp             ECCCGGGHHHHHHHHHHTT-CEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred             ccccccccccccccccccc-hhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCC
Confidence            9988776777777777765 444444222111111   1111 12333332 222 22   2346778889999987

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.45  E-value=0.072  Score=42.13  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=28.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      .|+|+|+|..|+++..+++..|...|.++++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            689999999999999999999976777776643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.33  E-value=1.2  Score=31.36  Aligned_cols=96  Identities=10%  Similarity=0.056  Sum_probs=57.0

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhH-HHHHHH---cCCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR-LSIARN---LGADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~-~~~~~~---~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      +.+.++|+|.|.+|..+++.+...|. .+++++..+++ .+.+++   .+... +.-+..+++   .+++.   .-..+|
T Consensus         2 ~knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~v-i~Gd~~d~~---~L~~a---~i~~a~   73 (153)
T d1id1a_           2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADV-IPGDSNDSS---VLKKA---GIDRCR   73 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEE-EESCTTSHH---HHHHH---TTTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcEE-EEccCcchH---HHHHh---ccccCC
Confidence            34679999999999999999999998 56677666543 333333   23332 222222222   22222   235689


Q ss_pred             EEEEccCChHH---HHHHHHhhcCCCEEEEe
Q 020928          212 VSFDCVGFDKT---MSTALNATRPGGKVCLI  239 (319)
Q Consensus       212 ~v~d~~g~~~~---~~~~~~~l~~~G~~v~~  239 (319)
                      .++-+.+.+..   .....+.+.+.-+++.-
T Consensus        74 ~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          74 AILALSDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             EEEEccccHHHHHHHHHHHHHhCCCCceEEE
Confidence            99988887532   22334455666666543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.081  Score=41.03  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=28.2

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCC-CeEEEecCChh
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGA-PRIIITDVDVQ  172 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~-~~vv~v~~~~~  172 (319)
                      +.+|||+| +|.+|..+++.+...|. .+|.++++++.
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            46899998 59999999998777674 46888877554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=92.26  E-value=0.25  Score=40.19  Aligned_cols=102  Identities=13%  Similarity=0.019  Sum_probs=63.5

Q ss_pred             cCCCCCCeEEEEC--CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC--EeeccCCCCcchhHHHHHhh
Q 020928          132 ANVGPETNVMIMG--SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD--ETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       132 ~~~~~~~~vlI~G--~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~i~~~~  203 (319)
                      ..+.+|++||=..  .|+.++   ..+ ..|+..|+.++.++...+.+++    .+.+  .+-.   ...|..+.++.+.
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl---~aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~---i~~d~~~~l~~~~  212 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSV---AAA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQL---VVMDVFDYFKYAR  212 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHH---HHH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEE---EESCHHHHHHHHH
T ss_pred             HHhhCCCceeecCCCCcHHHH---HHH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEE---EEccHHHHHHHHH
Confidence            4577899999874  465553   333 4688789999999988887765    1221  1111   1234455555544


Q ss_pred             hhcCCCccEEEEc---cCC------------hHHHHHHHHhhcCCCEEEEecc
Q 020928          204 NAMGSGIDVSFDC---VGF------------DKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       204 ~~~~~~~d~v~d~---~g~------------~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      + .+..||+||--   .+.            .+++..++++|+++|.++.+.-
T Consensus       213 ~-~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         213 R-HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             H-TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             h-hcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            3 24679998631   110            1356678889999999887653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.25  E-value=0.13  Score=35.34  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=28.9

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +.+++++|+|+|.+|+=+.+.++.+|. .|.++.++
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~   54 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAM   54 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEee
Confidence            345889999999999999999999998 56666543

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.25  E-value=0.25  Score=38.55  Aligned_cols=32  Identities=28%  Similarity=0.319  Sum_probs=26.4

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      .|||+| ++++|.++.+.+...|+ +|+.+++++
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~   35 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH-QIVGIDIRD   35 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            468888 69999999998889999 687777654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.25  E-value=0.17  Score=42.44  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=26.5

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEec
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITD  168 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~  168 (319)
                      |.+|||+| +|-+|..++..+...|. .|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            67899998 69999999998888998 788886

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.20  E-value=0.66  Score=33.88  Aligned_cols=97  Identities=12%  Similarity=0.067  Sum_probs=57.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccC-CCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVS-TDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +|-|+|.|.+|...+.-+...|+ .|.+.++++++.+.+.+.+......-. ....+....+..     -...+.++.++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~   76 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAAS-----LKKPRKALILV   76 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHH-----BCSSCEEEECC
T ss_pred             EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHh-----cccceEEEEee
Confidence            47788999999988887778898 688999999998877765543211000 000111111111     12345555555


Q ss_pred             CChH----HHHHHHHhhcCCCEEEEecc
Q 020928          218 GFDK----TMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       218 g~~~----~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ....    .+......+.++..++.++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~iii~~st  104 (178)
T d1pgja2          77 QAGAATDSTIEQLKKVFEKGDILVDTGN  104 (178)
T ss_dssp             CCSHHHHHHHHHHHHHCCTTCEEEECCC
T ss_pred             cCcchhhhhhhhhhhhccccceecccCc
Confidence            5432    23455556677776666654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.13  E-value=0.14  Score=34.97  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=29.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +++++|+|+|.+|+-+++.++.+|. .|..+.+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            4789999999999999999999998 677776654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.02  E-value=0.14  Score=35.29  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=29.3

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      .+++++|+|+|.+|+-+++++..+|. .|..+.+.+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            45799999999999999999999998 676665543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.00  E-value=0.43  Score=31.13  Aligned_cols=50  Identities=16%  Similarity=0.102  Sum_probs=37.4

Q ss_pred             CCCCCeEEEECCCHHHHHH-HHHHHHcCCCeEEEecCCh-hHHHHHHHcCCCE
Q 020928          134 VGPETNVMIMGSGPIGLVT-LLAARAFGAPRIIITDVDV-QRLSIARNLGADE  184 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~a-i~la~~~g~~~vv~v~~~~-~~~~~~~~~g~~~  184 (319)
                      .+..+++.++|.|++|+.+ +++++..|+ .|...|... ...+.+++.|...
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v   56 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKI   56 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeE
Confidence            4567889999988889877 688999999 788887643 3445666678654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=91.84  E-value=0.37  Score=36.85  Aligned_cols=91  Identities=18%  Similarity=0.185  Sum_probs=55.7

Q ss_pred             eEEEECCCHHHHH-HHHHHHH-cCCCeEEEecCChhHHH-HHHHcCCCE--eeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          139 NVMIMGSGPIGLV-TLLAARA-FGAPRIIITDVDVQRLS-IARNLGADE--TAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       139 ~vlI~G~g~vG~~-ai~la~~-~g~~~vv~v~~~~~~~~-~~~~~g~~~--v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +|.|+|+|.+|.. .+...+. -+++.+.++++++++.+ +.++++...  +..++    +    +.++.+  ..++|.|
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~----d----~~ell~--~~~iD~V  104 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYS----N----FDKIAK--DPKIDAV  104 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSS----S----GGGGGG--CTTCCEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccC----c----hhhhcc--cccceee
Confidence            6788999999863 3343333 36644446677776644 556676432  22221    2    222332  4579999


Q ss_pred             EEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          214 FDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +-++....+...+..+|..+- =+.+.
T Consensus       105 ~I~tp~~~H~~~~~~al~~gk-~v~~E  130 (221)
T d1h6da1         105 YIILPNSLHAEFAIRAFKAGK-HVMCE  130 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHTTC-EEEEC
T ss_pred             eeccchhhhhhHHHHhhhcch-hhhcC
Confidence            999988777888888887654 34443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.45  Score=36.36  Aligned_cols=105  Identities=20%  Similarity=0.279  Sum_probs=67.3

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhh-
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNA-  205 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~-  205 (319)
                      .+..+.++||-+|++. |..++.+|+.+.. .++++++.+++..+.+++    .|....+..  ...+..+.+.++... 
T Consensus        55 ~~~~~~k~vLEiGt~~-GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~--~~Gda~e~l~~~~~~~  131 (219)
T d2avda1          55 ARLIQAKKALDLGTFT-GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDL--RLKPALETLDELLAAG  131 (219)
T ss_dssp             HHHTTCCEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEE--EESCHHHHHHHHHHTT
T ss_pred             HHccCCCeEEEEechh-hHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEE--EEeehhhcchhhhhhc
Confidence            4556678999999765 7788888887531 289999999988666654    353332221  123444445444332 


Q ss_pred             cCCCccEEEEccCCh---HHHHHHHHhhcCCCEEEEe
Q 020928          206 MGSGIDVSFDCVGFD---KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~  239 (319)
                      ....+|.||--..-.   ..+..+++.|+++|-++.=
T Consensus       132 ~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         132 EAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence            245699986533322   3577889999999988753

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.73  E-value=0.18  Score=39.70  Aligned_cols=53  Identities=13%  Similarity=0.107  Sum_probs=37.4

Q ss_pred             hhhccchhHHHHHHHHhcC-CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEec
Q 020928          115 EGAMCEPLSVGVHACRRAN-VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD  168 (319)
Q Consensus       115 ~aa~~~~~~~a~~~l~~~~-~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~  168 (319)
                      +|+....+.++-.+++..+ --.+.+|+|.|.|.+|..+.+++...|+ +|++++
T Consensus        13 eATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs   66 (255)
T d1bgva1          13 EATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS   66 (255)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             ccchHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence            4444444444444454433 3467899999999999999999999999 666664

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.73  E-value=1.4  Score=30.86  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=30.1

Q ss_pred             eEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCChhHHHH
Q 020928          139 NVMIMGS-GPIGLVTLLAARAFGA-PRIIITDVDVQRLSI  176 (319)
Q Consensus       139 ~vlI~G~-g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~  176 (319)
                      +|.|+|+ |.+|..+..++...+. +.++-++..+.+-+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a   41 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA   41 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh
Confidence            6889995 9999999998888876 578888877655443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.68  E-value=0.18  Score=37.39  Aligned_cols=38  Identities=18%  Similarity=0.369  Sum_probs=31.5

Q ss_pred             eEEEE-CCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH
Q 020928          139 NVMIM-GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA  177 (319)
Q Consensus       139 ~vlI~-G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~  177 (319)
                      +|.|+ |+|.+|.+..+.+...|. .|+..++++++.+.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l   40 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAK   40 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            57788 689999999999999999 677778888876544

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.68  E-value=0.18  Score=34.72  Aligned_cols=37  Identities=27%  Similarity=0.560  Sum_probs=31.3

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      ++++++++|+|+|.+|.-++..++.+|. .|..+.+++
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~   63 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP   63 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc
Confidence            5678999999999999999999999998 677776654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=91.62  E-value=0.11  Score=38.92  Aligned_cols=86  Identities=9%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEe----eccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADET----AKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v----~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      .+|.|+|+|+.|.+...++...|. .|....++++..+.+.+-+....    +... .+-.+...+.+..    .+.|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~-~~i~~t~~l~~a~----~~ad~i   81 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLA-SNITFTSDVEKAY----NGAEII   81 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCC-TTEEEESCHHHHH----TTCSCE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccc-cccccchhhhhcc----CCCCEE
Confidence            369999999999999988887776 67778888887777665331110    0000 0001111222221    357999


Q ss_pred             EEccCChHHHHHHHHhh
Q 020928          214 FDCVGFDKTMSTALNAT  230 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l  230 (319)
                      |-++... .+...++.+
T Consensus        82 iiavPs~-~~~~~~~~~   97 (189)
T d1n1ea2          82 LFVIPTQ-FLRGFFEKS   97 (189)
T ss_dssp             EECSCHH-HHHHHHHHH
T ss_pred             EEcCcHH-HHHHHHHHH
Confidence            9999875 555555443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=91.54  E-value=0.51  Score=36.77  Aligned_cols=101  Identities=15%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      +...+....+||=+|+|. |..++.+++...-.++++++.. +..+.+    .+.+....+....  .|+.       +.
T Consensus        74 ~~~d~~~~~~VLDvGcG~-G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~--~D~~-------~~  142 (253)
T d1tw3a2          74 AAYDWTNVRHVLDVGGGK-GGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVE--GDFF-------EP  142 (253)
T ss_dssp             HHSCCTTCSEEEEETCTT-SHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEE--CCTT-------SC
T ss_pred             hhcCCccCCEEEEeCCCC-CHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHHhhcccchhhcc--ccch-------hh
Confidence            345677788999999876 8889999998744377778764 333333    3334221111111  1211       11


Q ss_pred             cCCCccEEEEccC-----Ch---HHHHHHHHhhcCCCEEEEecc
Q 020928          206 MGSGIDVSFDCVG-----FD---KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       206 ~~~~~d~v~d~~g-----~~---~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ...++|+|+-...     .+   ..++.+.+.|+|+|+++....
T Consensus       143 ~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         143 LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            2346898874321     12   347788899999999988753

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.51  E-value=0.86  Score=31.40  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=23.2

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEe
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIIT  167 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v  167 (319)
                      +|.|+| +|-+|++..+++...+...+..+
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~i   31 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKV   31 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEE
Confidence            588999 59999999999998888544443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.40  E-value=0.093  Score=40.93  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=27.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      .|+|+|+|..|+.+...++..|.+.|.+++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            589999999999999988889975588887653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.40  E-value=0.42  Score=37.45  Aligned_cols=41  Identities=17%  Similarity=0.136  Sum_probs=30.0

Q ss_pred             CCCeEEEEC-CCHHHHHHHH-HHHH--cCCCeEEEecCChhHHHHH
Q 020928          136 PETNVMIMG-SGPIGLVTLL-AARA--FGAPRIIITDVDVQRLSIA  177 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~-la~~--~g~~~vv~v~~~~~~~~~~  177 (319)
                      .|+.++|+| ++++|.++.+ ||+.  .|+ .|+.+++++++.+.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~   49 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHH
Confidence            355667778 5899987766 5653  588 788888988876654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=91.39  E-value=0.2  Score=36.05  Aligned_cols=41  Identities=22%  Similarity=0.186  Sum_probs=33.5

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHH
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL  174 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~  174 (319)
                      .++..+|.|+|+|.+|..+..++...+...++.++..+++.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~   44 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMP   44 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccc
Confidence            35678999999999999988888888877888888776543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=91.38  E-value=0.11  Score=37.30  Aligned_cols=82  Identities=16%  Similarity=0.056  Sum_probs=49.1

Q ss_pred             EECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccCChH
Q 020928          142 IMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVGFDK  221 (319)
Q Consensus       142 I~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g~~~  221 (319)
                      ++|+|.+|...++.++. +.....+.++++++.+.+.+.+.....+   . .+           .-...|+||=|+..+ 
T Consensus         4 fIG~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~~---~-~~-----------~~~~~DiVil~v~d~-   66 (153)
T d2i76a2           4 FVGTGTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGKAAT---L-EK-----------HPELNGVVFVIVPDR-   66 (153)
T ss_dssp             EESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCS---S-CC-----------CCC---CEEECSCTT-
T ss_pred             EEeCcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccccccc---h-hh-----------hhccCcEEEEeccch-
Confidence            56999999988876654 3334456788888888777765433211   1 11           123579999999865 


Q ss_pred             HHHHHHHhhcCCC-EEEEec
Q 020928          222 TMSTALNATRPGG-KVCLIG  240 (319)
Q Consensus       222 ~~~~~~~~l~~~G-~~v~~g  240 (319)
                      .+....+.++..+ .++.+.
T Consensus        67 ~i~~v~~~l~~~~~ivi~~s   86 (153)
T d2i76a2          67 YIKTVANHLNLGDAVLVHCS   86 (153)
T ss_dssp             THHHHHTTTCCSSCCEEECC
T ss_pred             hhhHHHhhhcccceeeeecc
Confidence            6677777776444 445554

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=91.22  E-value=0.91  Score=32.93  Aligned_cols=103  Identities=17%  Similarity=0.128  Sum_probs=57.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCC--hhHHHHHHHcCCCE-----eeccCC-------CCcch--hHHHHHh
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD--VQRLSIARNLGADE-----TAKVST-------DIEDV--DTDVGKI  202 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~--~~~~~~~~~~g~~~-----v~~~~~-------~~~~~--~~~i~~~  202 (319)
                      +|.|.|-|-+|.++.+.+...++. ++++...  .+....+-++...+     .+....       ..-.+  .....++
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~-iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~i   80 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVE-VALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI   80 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCC-EEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGC
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCE-EEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHHC
Confidence            578999999999999988888884 5555322  23333333332111     000000       00000  0011111


Q ss_pred             hhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      .+ ...++|+|+||.|.-...+.+..++..+-+-+.+..+.
T Consensus        81 ~W-~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~  120 (168)
T d2g82a1          81 PW-AEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA  120 (168)
T ss_dssp             CT-GGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             cc-cccCCceeEeccccccchHHhhhhhccccceeeecccc
Confidence            11 13579999999998655567777887776656665443

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.22  E-value=0.16  Score=35.03  Aligned_cols=34  Identities=9%  Similarity=0.109  Sum_probs=27.9

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      .+++++|+|+|.+|+-+++.++.+|.+ |..+.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~-Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLD-VTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCe-EEEEEec
Confidence            457899999999999999999999995 4444443

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.16  E-value=0.74  Score=32.62  Aligned_cols=39  Identities=18%  Similarity=0.221  Sum_probs=29.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR  178 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~  178 (319)
                      +|.|+|.|.+|...+.-+...|. .+++.++.+++....+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~   40 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIER   40 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHh
Confidence            57889999999999998888898 6777766655544443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.15  E-value=0.3  Score=38.96  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=27.1

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +..+|||+| +|.+|..++..+...|. .|++++++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~   36 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRP   36 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            456799998 59999999998888898 56666554

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=91.10  E-value=1.1  Score=32.38  Aligned_cols=105  Identities=20%  Similarity=0.255  Sum_probs=61.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEe-cC--ChhHHHHHHHcCCCE-----eecc-------CCCCcch--hHHHHH
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIIT-DV--DVQRLSIARNLGADE-----TAKV-------STDIEDV--DTDVGK  201 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v-~~--~~~~~~~~~~~g~~~-----v~~~-------~~~~~~~--~~~i~~  201 (319)
                      +|.|.|-|-+|.++...+...+.. ++++ +.  +.+....+-++...+     -+.+       +...-.+  .....+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~-ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQ-VVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCC-EEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCc-EEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            688999999999999988877884 5555 32  334555554443211     0000       0000000  001111


Q ss_pred             hhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCCc
Q 020928          202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKTE  245 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  245 (319)
                      +.+ ...++|+|+||.|.-.....+..++..+-+-+.+..+..+
T Consensus        81 i~W-~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d  123 (169)
T d1dssg1          81 IPW-SKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSAD  123 (169)
T ss_dssp             CCH-HHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSS
T ss_pred             CCc-cccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccc
Confidence            111 1347999999999865667778889888777777654433

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.97  E-value=0.18  Score=34.83  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=29.5

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +.+++++|+|+|.+|+=+++..+.+|. .|..+...
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~   58 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMM   58 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEee
Confidence            446899999999999999999999998 66666554

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.97  E-value=0.095  Score=41.89  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=28.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      .|+|+|+|+.|+++...++..|. .|.+++..+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            68999999999999999999999 688887654

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.89  E-value=0.92  Score=37.71  Aligned_cols=55  Identities=20%  Similarity=0.151  Sum_probs=42.1

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEec--CChhHHHHHHHcCCCEee
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETA  186 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~--~~~~~~~~~~~~g~~~v~  186 (319)
                      .+++++.+|+-..+|+.|+++...|+.+|.+.++++.  .++.+.+.++.+|+..+.
T Consensus       139 ~~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~  195 (382)
T d1wkva1         139 RRVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIV  195 (382)
T ss_dssp             TTSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             hccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceee
Confidence            4577777655456899999999999999996555553  466788889999987654

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.82  E-value=0.24  Score=40.50  Aligned_cols=36  Identities=19%  Similarity=0.071  Sum_probs=26.4

Q ss_pred             CCeEEEECCC---HHHHHHHHHHHHcCCCeEEEecCChhH
Q 020928          137 ETNVMIMGSG---PIGLVTLLAARAFGAPRIIITDVDVQR  173 (319)
Q Consensus       137 ~~~vlI~G~g---~vG~~ai~la~~~g~~~vv~v~~~~~~  173 (319)
                      ++..||+|++   ++|.++.+.+...|+ .|+.+.+....
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~~~~   40 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVY   40 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECGGGH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCchhh
Confidence            4566888843   899999998889999 56666555443

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.72  E-value=0.27  Score=34.30  Aligned_cols=39  Identities=18%  Similarity=0.324  Sum_probs=32.1

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      ..++++++++|+|+|.+|+-++..++..|. .|..+.+.+
T Consensus        30 ~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~   68 (133)
T d1q1ra2          30 RQLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA   68 (133)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             HhhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence            346678999999999999999999999998 677776543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=90.70  E-value=0.19  Score=38.90  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=29.2

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      +...+|+|+|+|..|+++...+...|. .|.++++
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier   37 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILAR   37 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeC
Confidence            455689999999999999999999998 6888875

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.23  Score=34.23  Aligned_cols=34  Identities=18%  Similarity=0.182  Sum_probs=28.9

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +++++|+|+|.+|+-+++.++.+|. .|..+.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            4799999999999999999999998 677776643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.43  E-value=0.15  Score=41.89  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=30.8

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  172 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~  172 (319)
                      ++++|||+| +|-+|..+++.+...|. .|.++++.+.
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence            578999998 69999999999999998 6888877654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=90.41  E-value=0.15  Score=38.61  Aligned_cols=87  Identities=23%  Similarity=0.246  Sum_probs=54.8

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+.+|.|+|.|.+|..++++++.+|. +|++.++...+..       ...+.+    .+    +.++..    ..|++.-
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~-------~~~~~~----~~----l~~l~~----~~D~v~~  103 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMKGD-------HPDFDY----VS----LEDLFK----QSDVIDL  103 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSSC-------CTTCEE----CC----HHHHHH----HCSEEEE
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCccchhh-------hcchhH----HH----HHHHHH----hccccee
Confidence            46799999999999999999999999 7888876533210       000011    11    222221    3566655


Q ss_pred             ccCC-hH----HHHHHHHhhcCCCEEEEeccc
Q 020928          216 CVGF-DK----TMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       216 ~~g~-~~----~~~~~~~~l~~~G~~v~~g~~  242 (319)
                      ++.. ++    .-...++.|+++..++.++..
T Consensus       104 ~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG  135 (199)
T d1dxya1         104 HVPGIEQNTHIINEAAFNLMKPGAIVINTARP  135 (199)
T ss_dssp             CCCCCGGGTTSBCHHHHHHSCTTEEEEECSCT
T ss_pred             eecccccccccccHHHhhccCCceEEEecccH
Confidence            4433 21    124567788888888887754

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=90.40  E-value=1.9  Score=34.77  Aligned_cols=114  Identities=12%  Similarity=0.147  Sum_probs=69.2

Q ss_pred             HHHHHHhc-CCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEec--CChhHHHHHHHcCCCEeeccCCCCcchh-----
Q 020928          125 GVHACRRA-NVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTDIEDVD-----  196 (319)
Q Consensus       125 a~~~l~~~-~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~-----  196 (319)
                      |++.+... .-.+..+|+...+|..|.++...++.+|.+.++++.  .++++.+.++.+|+..+.. .....+..     
T Consensus        62 a~~~i~~~~~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~-~~~~~~~~~~~~~  140 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLH-GANFDEAKAKAIE  140 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECC-CSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEc-Ccccccchhhhhh
Confidence            34445442 233445555556888899999999999997666553  4567888899999876531 11000000     


Q ss_pred             -----------------------HHHHHhhhhcCCCccEEEEccCChHHHHH---HHHhhcCCCEEEEec
Q 020928          197 -----------------------TDVGKIQNAMGSGIDVSFDCVGFDKTMST---ALNATRPGGKVCLIG  240 (319)
Q Consensus       197 -----------------------~~i~~~~~~~~~~~d~v~d~~g~~~~~~~---~~~~l~~~G~~v~~g  240 (319)
                                             ....++.++ ...+|.+|-++|+...+.-   .++.+.+.-+++.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q-~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve  209 (331)
T d1tdja1         141 LSQQQGFTWVPPFDHPMVIAGQGTLALELLQQ-DAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVE  209 (331)
T ss_dssp             HHHHHCCEECCSSCCHHHHHHHHHHHHHHHHH-CTTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             hhhcCCCccccccCChHHhhhhhhHHHHHHHh-cCCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEec
Confidence                                   011122222 2459999999998655443   444556777888775

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.25  E-value=0.23  Score=33.64  Aligned_cols=34  Identities=26%  Similarity=0.502  Sum_probs=28.6

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +++++|+|+|.+|+-+++.++.+|. .|..+.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            4799999999999999999999998 676665543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.25  E-value=0.16  Score=35.01  Aligned_cols=36  Identities=17%  Similarity=0.315  Sum_probs=30.4

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +.+++++|+|+|.+|+=+++.++.+|. .|.++.+++
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~   58 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFAS   58 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEcc
Confidence            445899999999999999999999998 677776654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.24  E-value=1.3  Score=35.04  Aligned_cols=101  Identities=18%  Similarity=0.207  Sum_probs=58.5

Q ss_pred             hcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHH----HcCCCEeeccCCCCcchhHHHHHhhhhc
Q 020928          131 RANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVSTDIEDVDTDVGKIQNAM  206 (319)
Q Consensus       131 ~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~i~~~~~~~  206 (319)
                      ....+++++||=..|++=|. +.++|....-..|++.+.++.|.+.++    .+|...+..... ......    .  ..
T Consensus        97 ~L~~~~g~~vLD~CAaPGgK-t~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~-~~~~~~----~--~~  168 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGK-TTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGD-GRYPSQ----W--CG  168 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHH-HHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECC-TTCTHH----H--HT
T ss_pred             ccCccccceeEeccCccccc-hhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecc-ccccch----h--cc
Confidence            35689999999875444233 334454443247999999998876654    477654433221 111111    1  12


Q ss_pred             CCCccEE-EE--ccCCh-------------------------HHHHHHHHhhcCCCEEEEe
Q 020928          207 GSGIDVS-FD--CVGFD-------------------------KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       207 ~~~~d~v-~d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~~  239 (319)
                      ...||.| +|  |.|..                         ..+..+++.++++|+++..
T Consensus       169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYs  229 (284)
T d1sqga2         169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA  229 (284)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence            4568876 56  44442                         2455666678888887643

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.22  E-value=0.64  Score=37.49  Aligned_cols=99  Identities=18%  Similarity=0.250  Sum_probs=62.6

Q ss_pred             EEEEC-CCHHHHHHHHHHHHcCCCeEEEe--cCChhHHHHHHHcCCCEeeccCCCCcchhHHHH----------------
Q 020928          140 VMIMG-SGPIGLVTLLAARAFGAPRIIIT--DVDVQRLSIARNLGADETAKVSTDIEDVDTDVG----------------  200 (319)
Q Consensus       140 vlI~G-~g~vG~~ai~la~~~g~~~vv~v--~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~----------------  200 (319)
                      .++.+ +|+.|.++...|+.+|.+.++++  ..++.+.+.++.+|+..+.. ....++.....+                
T Consensus        71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~-~~~~~~~~~~a~~~a~~~g~~~~~~~~~  149 (318)
T d1v71a1          71 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMY-DRYKDDREKMAKEISEREGLTIIPPYDH  149 (318)
T ss_dssp             CEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEE-CTTTTCHHHHHHHHHHHHTCBCCCSSSS
T ss_pred             eeeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEec-cCCchHHHHHHHHHHHhcCCEecCCccc
Confidence            34554 79999999999999999765555  34667888899999876542 222122211111                


Q ss_pred             ------------HhhhhcCCCccEEEEccCChHHH---HHHHHhhcCCCEEEEec
Q 020928          201 ------------KIQNAMGSGIDVSFDCVGFDKTM---STALNATRPGGKVCLIG  240 (319)
Q Consensus       201 ------------~~~~~~~~~~d~v~d~~g~~~~~---~~~~~~l~~~G~~v~~g  240 (319)
                                  ++.++. ..+|.+|-++|+...+   ...++.+.+..+++.+.
T Consensus       150 ~~~~~g~~t~~~Ei~~q~-~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~  203 (318)
T d1v71a1         150 PHVLAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVE  203 (318)
T ss_dssp             HHHHHHHTHHHHHHHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccchHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCCceeeccc
Confidence                        122212 3579999888876443   34455667778877664

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=90.21  E-value=0.41  Score=35.88  Aligned_cols=89  Identities=18%  Similarity=0.203  Sum_probs=57.7

Q ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          134 VGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       134 ~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      +.++.+||=+|+|. |..+..++      ++++++.+++..+.+++-+.... ..+.  .+       +. ...+.+|+|
T Consensus        34 ~~~~~~vLDiGcG~-G~~~~~~~------~~~giD~s~~~~~~a~~~~~~~~-~~d~--~~-------l~-~~~~~fD~I   95 (208)
T d1vlma_          34 LLPEGRGVEIGVGT-GRFAVPLK------IKIGVEPSERMAEIARKRGVFVL-KGTA--EN-------LP-LKDESFDFA   95 (208)
T ss_dssp             HCCSSCEEEETCTT-STTHHHHT------CCEEEESCHHHHHHHHHTTCEEE-ECBT--TB-------CC-SCTTCEEEE
T ss_pred             hCCCCeEEEECCCC-cccccccc------eEEEEeCChhhcccccccccccc-cccc--cc-------cc-ccccccccc
Confidence            45667899999865 65554442      45889999999999988654322 1111  11       11 124568998


Q ss_pred             EEccCC------hHHHHHHHHhhcCCCEEEEec
Q 020928          214 FDCVGF------DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       214 ~d~~g~------~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +....-      ...++.+.+.|+++|+++...
T Consensus        96 ~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_          96 LMVTTICFVDDPERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             EEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccccccccchhhhhhcCCCCceEEEEe
Confidence            754322      135788899999999988764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.19  Score=40.75  Aligned_cols=35  Identities=26%  Similarity=0.480  Sum_probs=29.8

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      ++..+|+|+|+|..|+.|...+...|. .|.+.+.+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            456789999999999999999999998 78887654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.16  E-value=0.22  Score=36.98  Aligned_cols=84  Identities=14%  Similarity=0.128  Sum_probs=56.1

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.+|.|+|.|.+|....++++.+|. +|++.++++..       +...   +   ..+    +.++.    ...|+|+-
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~-------~~~~---~---~~~----l~ell----~~sDiv~~   98 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKE-------GPWR---F---TNS----LEEAL----REARAAVC   98 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCC-------SSSC---C---BSC----SHHHH----TTCSEEEE
T ss_pred             cCceEEEeccccccccceeeeecccc-ccccccccccc-------ccee---e---eec----hhhhh----hccchhhc
Confidence            57899999999999999999999999 78888765421       1100   0   011    22222    35678776


Q ss_pred             ccCCh-HH----HHHHHHhhcCCCEEEEecc
Q 020928          216 CVGFD-KT----MSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       216 ~~g~~-~~----~~~~~~~l~~~G~~v~~g~  241 (319)
                      ++.-. +.    -...++.|+++..++.++.
T Consensus        99 ~~pl~~~t~~li~~~~l~~mk~~ailIN~~R  129 (181)
T d1qp8a1          99 ALPLNKHTRGLVKYQHLALMAEDAVFVNVGR  129 (181)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred             ccccccccccccccceeeeccccceEEeccc
Confidence            55432 11    2467788899998888764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.10  E-value=0.26  Score=35.38  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=29.6

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      .+++|+|+|+|.+|+-++..+.++|++.|.++.+.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            46789999999999999999999999877777543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.03  E-value=0.19  Score=40.90  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=29.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      ..+|+|+|||..|+.++..+...|. .|.+++.++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            5789999999999999998888898 788887654

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=89.97  E-value=1.6  Score=31.77  Aligned_cols=104  Identities=23%  Similarity=0.257  Sum_probs=56.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCC---eEEEecC--ChhHHHHHHHcCCCEe-----ec-------cCCCCcch--hHHH
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAP---RIIITDV--DVQRLSIARNLGADET-----AK-------VSTDIEDV--DTDV  199 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~---~vv~v~~--~~~~~~~~~~~g~~~v-----~~-------~~~~~~~~--~~~i  199 (319)
                      +|.|.|-|-+|.++...+-..+.+   .++++..  +.+....+-++...+-     +.       .+...-.+  ....
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p   82 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRNP   82 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSCG
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCCH
Confidence            578899999999988766543211   4566542  3344444433321110     00       00000000  0011


Q ss_pred             HHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          200 GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       200 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      .++.+ ...++|+|+||.|.-.....+..+|..+-+-+.+..+.
T Consensus        83 ~~i~W-~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~  125 (173)
T d1obfo1          83 AQLPW-GALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPG  125 (173)
T ss_dssp             GGSCT-TTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCC
T ss_pred             HHCcc-cccccceEEEecccccCHHHHHHHhccCCcceEEecCC
Confidence            11222 24589999999997545667778888787777776543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.95  E-value=1.5  Score=27.95  Aligned_cols=45  Identities=22%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             eEEEECCCHHHHHH-HHHHHHcCCCeEEEecCCh-hHHHHHHHcCCCE
Q 020928          139 NVMIMGSGPIGLVT-LLAARAFGAPRIIITDVDV-QRLSIARNLGADE  184 (319)
Q Consensus       139 ~vlI~G~g~vG~~a-i~la~~~g~~~vv~v~~~~-~~~~~~~~~g~~~  184 (319)
                      +|-++|-|++|+.+ +++++..|+ .|.+.|..+ ...+.++++|...
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i   49 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPI   49 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCE
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeE
Confidence            56667988889866 478889999 788888765 4566788889754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.88  E-value=1.9  Score=32.26  Aligned_cols=94  Identities=18%  Similarity=0.110  Sum_probs=60.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .+|=+|+|. |..++.+|+...-..+++++-++.....+    ++.+...+..+.....++.   ..+   ....+|.|+
T Consensus        34 lvLdIGcG~-G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~---~~~---~~~~~~~i~  106 (204)
T d1yzha1          34 IHVEVGSGK-GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT---DYF---EDGEIDRLY  106 (204)
T ss_dssp             EEEEESCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG---GTS---CTTCCSEEE
T ss_pred             eEEEEeccC-CHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh---hhc---cCCceehhc
Confidence            455579887 89999999998555899999988765544    3455543322222212221   111   234678776


Q ss_pred             EccCC--------------hHHHHHHHHhhcCCCEEEEe
Q 020928          215 DCVGF--------------DKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       215 d~~g~--------------~~~~~~~~~~l~~~G~~v~~  239 (319)
                      -....              ++.++.+.+.|+++|.+...
T Consensus       107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            65543              35788899999999998654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.77  E-value=0.35  Score=38.30  Aligned_cols=105  Identities=11%  Similarity=0.093  Sum_probs=58.0

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHc-----CCC-eEEEecCChhHHHHHHHc-CC-----CEeeccCCCCcchhHHHH
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAF-----GAP-RIIITDVDVQRLSIARNL-GA-----DETAKVSTDIEDVDTDVG  200 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~-----g~~-~vv~v~~~~~~~~~~~~~-g~-----~~v~~~~~~~~~~~~~i~  200 (319)
                      +.++.-+||=+|+|. |..+..+++.+     +.. .+++++.++...+.+++. .-     ...++..  ..++.....
T Consensus        37 ~~~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~  113 (280)
T d1jqea_          37 DTKSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWH--KETSSEYQS  113 (280)
T ss_dssp             TTCSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEE--CSCHHHHHH
T ss_pred             cCCCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccch--hhhhhhhcc
Confidence            345555788898765 55555554432     221 468889998887777652 11     0111111  111111111


Q ss_pred             Hh-hhhcCCCccEEEEccC-----C-hHHHHHHHHhhcCCCEEEEec
Q 020928          201 KI-QNAMGSGIDVSFDCVG-----F-DKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       201 ~~-~~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .. .......||+|+-.-.     . ...+..+.+.|+|+|.++...
T Consensus       114 ~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         114 RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             HHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            11 1113567999975332     1 247888999999999887664

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.57  E-value=0.66  Score=37.84  Aligned_cols=37  Identities=16%  Similarity=0.298  Sum_probs=29.2

Q ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh
Q 020928          135 GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ  172 (319)
Q Consensus       135 ~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~  172 (319)
                      ++.++|||+| +|.+|..++..+...|. .|+++.++.+
T Consensus         1 ~~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~   38 (350)
T d1xgka_           1 QQKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLK   38 (350)
T ss_dssp             CCCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcc
Confidence            3567999998 69999999998888898 4666666544

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.50  E-value=0.47  Score=36.61  Aligned_cols=33  Identities=18%  Similarity=0.443  Sum_probs=27.0

Q ss_pred             CCCCeEEEECCCHHHHHHHHHH-HHcCCCeEEEec
Q 020928          135 GPETNVMIMGSGPIGLVTLLAA-RAFGAPRIIITD  168 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la-~~~g~~~vv~v~  168 (319)
                      -++.+|+|.|.|.+|..+.+++ +..|+ ++++++
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVS   62 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEee
Confidence            4688999999999999988876 56798 666664

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.49  E-value=0.17  Score=39.52  Aligned_cols=33  Identities=21%  Similarity=0.412  Sum_probs=27.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChh
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQ  172 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~  172 (319)
                      -|+|+|+|+.|+++...|...|. +|.+++..++
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            47899999999998888888898 6888887654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.49  E-value=0.16  Score=41.14  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=25.9

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      ++|||+| +|-+|..++..+...|. .|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            5899998 59999999988888898 6777764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=89.46  E-value=0.23  Score=37.31  Aligned_cols=90  Identities=19%  Similarity=0.270  Sum_probs=55.1

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .|.++.|+|.|.+|....++++.+|. +|+..++..... .....+....       .+    +.++.    ...|+|.-
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-~~~~~~~~~~-------~~----l~~ll----~~sD~i~~  110 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV-------ST----LQDLL----FHSDCVTL  110 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC-------SS----HHHHH----HHCSEEEE
T ss_pred             eCceEEEeccccccccceeeeecccc-ceeeccCccccc-chhhhccccc-------cc----hhhcc----ccCCEEEE
Confidence            57899999999999999999999999 688877654332 2222232211       01    22222    13566655


Q ss_pred             ccCCh-HH----HHHHHHhhcCCCEEEEeccc
Q 020928          216 CVGFD-KT----MSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       216 ~~g~~-~~----~~~~~~~l~~~G~~v~~g~~  242 (319)
                      +.... +.    -...++.|+++..++.++..
T Consensus       111 ~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG  142 (193)
T d1mx3a1         111 HCGLNEHNHHLINDFTVKQMRQGAFLVNTARG  142 (193)
T ss_dssp             CCCCCTTCTTSBSHHHHTTSCTTEEEEECSCT
T ss_pred             eecccccchhhhhHHHHhccCCCCeEEecCCc
Confidence            44422 11    23456778888888877653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.35  E-value=0.17  Score=38.44  Aligned_cols=30  Identities=30%  Similarity=0.538  Sum_probs=25.7

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      |+|+|+|+.|+.+...+.++|. +|++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~   35 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            7888999999999999999998 67777654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.23  E-value=0.26  Score=39.41  Aligned_cols=32  Identities=22%  Similarity=0.450  Sum_probs=28.6

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEec
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITD  168 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~  168 (319)
                      .|.+|+|.|.|.+|..+++++...|+ +|++++
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vs   66 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVG   66 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            57899999999999999999999999 677764

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.22  E-value=0.57  Score=38.93  Aligned_cols=99  Identities=15%  Similarity=0.172  Sum_probs=62.7

Q ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH---c-CCCEee--------ccC----CCCcchhHHHH
Q 020928          137 ETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN---L-GADETA--------KVS----TDIEDVDTDVG  200 (319)
Q Consensus       137 ~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~---~-g~~~v~--------~~~----~~~~~~~~~i~  200 (319)
                      +.+||= +-++.|.-++.+|+..|+..|++.|.+++..+.+++   + +.....        ...    ....|..    
T Consensus        46 ~~~vLD-~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~----  120 (375)
T d2dula1          46 PKIVLD-ALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN----  120 (375)
T ss_dssp             CSEEEE-SSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH----
T ss_pred             CCEEEE-cCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh----
Confidence            344433 444558889999999999889999999999888875   1 211100        000    0001211    


Q ss_pred             HhhhhcCCCccEE-EEccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          201 KIQNAMGSGIDVS-FDCVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       201 ~~~~~~~~~~d~v-~d~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                      .+....+..||+| +|..|++ ..++.++++++.+|-+..+.
T Consensus       121 ~~~~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         121 RLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HHHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhHhhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEe
Confidence            1222235679976 9999985 46788999999998776553

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=89.11  E-value=0.47  Score=38.58  Aligned_cols=36  Identities=19%  Similarity=0.173  Sum_probs=27.5

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHH
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRL  174 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~  174 (319)
                      +|||+| +|-+|..+++.+...|...|++++....+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~   38 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI   38 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGG
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcch
Confidence            589998 599999998877777744788887655443

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=89.10  E-value=0.1  Score=38.36  Aligned_cols=83  Identities=18%  Similarity=0.115  Sum_probs=52.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEcc
Q 020928          139 NVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCV  217 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~  217 (319)
                      +|.|+|+|.+|...+..++.. ++..+.+.++++++.      ....+..+        .....+    ...+|+|+.|.
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~------~~~~~~~~--------~~~~~~----~~~~D~Vvi~t   66 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD------TKTPVFDV--------ADVDKH----ADDVDVLFLCM   66 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS------SSSCEEEG--------GGGGGT----TTTCSEEEECS
T ss_pred             eEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc------cccccccc--------hhhhhh----ccccceEEEeC
Confidence            688999999998877766654 553344444443321      11111111        011111    24699999999


Q ss_pred             CChHHHHHHHHhhcCCCEEEEe
Q 020928          218 GFDKTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       218 g~~~~~~~~~~~l~~~G~~v~~  239 (319)
                      +.....+.+.++|..|-.++.+
T Consensus        67 p~~~h~~~a~~aL~aG~~vv~~   88 (170)
T d1f06a1          67 GSATDIPEQAPKFAQFACTVDT   88 (170)
T ss_dssp             CTTTHHHHHHHHHTTTSEEECC
T ss_pred             CCcccHHHHHHHHHCCCcEEEe
Confidence            9877888899999998887754

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.10  E-value=0.22  Score=38.46  Aligned_cols=36  Identities=25%  Similarity=0.482  Sum_probs=29.4

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhH
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQR  173 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~  173 (319)
                      ++++||+| ++++|.+.++.+...|+ .|+.++++++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCccc
Confidence            36788898 69999999998888999 68888776654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=89.08  E-value=0.29  Score=35.54  Aligned_cols=36  Identities=11%  Similarity=0.251  Sum_probs=28.5

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCC-eEEEecCCh
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAP-RIIITDVDV  171 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~-~vv~v~~~~  171 (319)
                      .|++|+|+|+|.+|+.+++.++.++.+ .|..++..+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            378999999999999999988887753 566666544

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=88.98  E-value=0.2  Score=38.86  Aligned_cols=31  Identities=32%  Similarity=0.659  Sum_probs=26.1

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      |+|+|+|+.|+++...+...|. +|++++..+
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~   35 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN   35 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            7889999999988888888898 688887654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.94  E-value=0.1  Score=38.98  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=27.9

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      ++..|+|+|+|+.|+.+...|.++|. +++++++.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEee
Confidence            45679999999999999999999999 46666543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.92  E-value=2.1  Score=34.37  Aligned_cols=101  Identities=24%  Similarity=0.320  Sum_probs=59.8

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHH----HcCCCEeeccCCCCcchhHHHHHhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIAR----NLGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ...+.++|++||=.-|++ |-=+.+++...+- ..+++.+.+++|...++    .+|...++........+        .
T Consensus       110 ~~l~~~~g~~vlD~CAap-GgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~--------~  180 (313)
T d1ixka_         110 VALDPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI--------G  180 (313)
T ss_dssp             HHHCCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG--------G
T ss_pred             hcccCCccceeeecccch-hhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc--------c
Confidence            345789999988764433 2234455554432 26889999998876654    46765554433221111        1


Q ss_pred             hcCCCccEE-EE--ccCCh-------------------------HHHHHHHHhhcCCCEEEEe
Q 020928          205 AMGSGIDVS-FD--CVGFD-------------------------KTMSTALNATRPGGKVCLI  239 (319)
Q Consensus       205 ~~~~~~d~v-~d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~~  239 (319)
                      .....||.| +|  |.|..                         ..+..+++.++++|+++..
T Consensus       181 ~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYs  243 (313)
T d1ixka_         181 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS  243 (313)
T ss_dssp             GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEe
Confidence            124567776 45  44432                         2467788889999986643

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.89  E-value=0.95  Score=31.14  Aligned_cols=61  Identities=16%  Similarity=0.311  Sum_probs=48.4

Q ss_pred             HHHHhcCCCCCCeEEEE-CCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeec
Q 020928          127 HACRRANVGPETNVMIM-GSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAK  187 (319)
Q Consensus       127 ~~l~~~~~~~~~~vlI~-G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~  187 (319)
                      ..|+.++++.-+.+++. ..-..-+.+.++++.+|..++++...+++..+.++++|++.+++
T Consensus        56 ~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~  117 (132)
T d1lssa_          56 KTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVS  117 (132)
T ss_dssp             HHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEEC
T ss_pred             hhhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEEC
Confidence            34677888887777664 45455678888999999888888888888889999999988875

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.88  E-value=0.22  Score=36.57  Aligned_cols=30  Identities=30%  Similarity=0.491  Sum_probs=25.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      -|+|+|+|+.|+.|...|.+.|. +++++++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            37889999999999999999999 5677764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=88.83  E-value=2.7  Score=29.36  Aligned_cols=37  Identities=27%  Similarity=0.556  Sum_probs=29.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHH
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRL  174 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~  174 (319)
                      .+|.|+|+|.+|..+...+...+. +.++-++..+++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~   39 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERV   39 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence            578899999999999887777765 4688888877654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.80  E-value=0.87  Score=31.88  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=27.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHH
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLS  175 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~  175 (319)
                      +|.|+|+|.+|..+...+...+. +.++-+|..+++.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~   39 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAE   39 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccccccc
Confidence            57888999999888876666553 47888887776543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.78  E-value=0.22  Score=38.13  Aligned_cols=31  Identities=16%  Similarity=0.241  Sum_probs=26.9

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      |+|+|+|..|+.++..+...|. +|.+++.++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            7889999999999998888898 788987754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.75  E-value=0.62  Score=34.88  Aligned_cols=67  Identities=18%  Similarity=0.232  Sum_probs=42.4

Q ss_pred             CChhhhhccchhHH--HHHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHc
Q 020928          111 VSLEEGAMCEPLSV--GVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNL  180 (319)
Q Consensus       111 ~~~~~aa~~~~~~~--a~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~  180 (319)
                      +.+||-.+.+..+.  .|.+....++ .|++||=.|+|. |.+++. |..+|++.|+.++.++...+.+++.
T Consensus        22 ~~leQy~T~~~~a~~~~~~~~~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N   90 (197)
T d1ne2a_          22 NYLEQYPTDASTAAYFLIEIYNDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRN   90 (197)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHHHcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHc
Confidence            45667666554432  2223344666 589999998765 655554 4446877899999999999988874

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.67  E-value=0.5  Score=35.90  Aligned_cols=102  Identities=13%  Similarity=0.134  Sum_probs=59.8

Q ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhHHHHHH----HcCCCEeeccCCCCcchhHHHHHhhhhc-
Q 020928          133 NVGPETNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQRLSIAR----NLGADETAKVSTDIEDVDTDVGKIQNAM-  206 (319)
Q Consensus       133 ~~~~~~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~i~~~~~~~-  206 (319)
                      +..+.++||-+|++. |..++.+|+.+.- .++++++.+++..+.++    ..|...-+..  ...+..+.+.++.+.. 
T Consensus        53 ~~~kpk~ILEiGt~~-G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l--~~Gd~~e~l~~l~~~~~  129 (214)
T d2cl5a1          53 REYSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTI--LNGASQDLIPQLKKKYD  129 (214)
T ss_dssp             HHHCCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEE--EESCHHHHGGGHHHHSC
T ss_pred             HhhCCCEEEEEccCc-hhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCcccee--eeccccccccchhhccc
Confidence            344567999999765 6677888887532 38999999988776664    4454332221  1234444555554322 


Q ss_pred             CCCccEEEEccCChH-----HHHHHHHhhcCCCEEE
Q 020928          207 GSGIDVSFDCVGFDK-----TMSTALNATRPGGKVC  237 (319)
Q Consensus       207 ~~~~d~v~d~~g~~~-----~~~~~~~~l~~~G~~v  237 (319)
                      ...+|.+|--..-..     .+...++.|+++|.++
T Consensus       130 ~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv  165 (214)
T d2cl5a1         130 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLL  165 (214)
T ss_dssp             CCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ccccceeeecccccccccHHHHHHHhCccCCCcEEE
Confidence            346898864322111     1233445689988655

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.30  E-value=1.9  Score=31.36  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=24.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +|.|+|+|+.|.+....+...|. .|....+.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEec
Confidence            57899999999988888777786 56666553

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.27  E-value=0.45  Score=38.56  Aligned_cols=32  Identities=16%  Similarity=-0.022  Sum_probs=27.2

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +++||+| +|-+|..++..+...|. .|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence            5789998 59999999998888998 78888763

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.10  E-value=0.54  Score=34.78  Aligned_cols=90  Identities=22%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+.++.|+|.|.+|..+.++++.+|. +|++.++.....+. ...+...        .++    .++.    ...|+|.-
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~-~~~~~~~--------~~l----~ell----~~sDiv~~  104 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARA-AQLGIEL--------LSL----DDLL----ARADFISV  104 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHH-HHHTCEE--------CCH----HHHH----HHCSEEEE
T ss_pred             cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHH-hhcCcee--------ccH----HHHH----hhCCEEEE
Confidence            56789999999999999999999999 78888766544332 2223211        111    1222    13577766


Q ss_pred             ccCCh-HH----HHHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFD-KT----MSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~-~~----~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +..-. ++    -...++.|+++..++.++...
T Consensus       105 ~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~  137 (184)
T d1ygya1         105 HLPKTPETAGLIDKEALAKTKPGVIIVNAARGG  137 (184)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTT
T ss_pred             cCCCCchhhhhhhHHHHhhhCCCceEEEecchh
Confidence            55432 11    235667888888888776543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.09  E-value=0.24  Score=37.54  Aligned_cols=30  Identities=17%  Similarity=0.464  Sum_probs=26.0

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      |+|+|+|+.|+.+...|..+|. +|++++..
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            6888999999999999999998 57777654

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.07  E-value=2  Score=34.33  Aligned_cols=48  Identities=23%  Similarity=0.380  Sum_probs=36.1

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEec--CChhHHHHHHHcCCCEee
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETA  186 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~--~~~~~~~~~~~~g~~~v~  186 (319)
                      .-+|.. +|..|.++...|+.+|.+.++++.  .++.+.+.++.+|+..+.
T Consensus        55 ~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~v~~  105 (319)
T d1p5ja_          55 AHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKV  105 (319)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHhhhccccceeccccccccccccccccceecccc
Confidence            345565 799999999999999997666653  355778888888876543

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.04  E-value=0.77  Score=35.48  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=27.2

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEecC
Q 020928          135 GPETNVMIMGSGPIGLVTLLAAR-AFGAPRIIITDV  169 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~-~~g~~~vv~v~~  169 (319)
                      -+|.+|+|.|.|.+|..+.+++. ..|+ +|+++..
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~-kvv~vsD   64 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVSD   64 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEEC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCc-ceeeccc
Confidence            36899999999999999998764 5788 6666643

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.03  E-value=1  Score=36.52  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=25.0

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      +.|||+| +|-+|..++..+...|. .|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEEC
Confidence            4689998 69999999988888898 6777753

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.99  E-value=0.58  Score=33.32  Aligned_cols=38  Identities=21%  Similarity=0.331  Sum_probs=32.0

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhH
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQR  173 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~  173 (319)
                      |..+|.|+|+|.+|.....++...+...++-+|..+++
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~   39 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNM   39 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCc
Confidence            45689999999999998888888888888888876654

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.99  E-value=5  Score=31.51  Aligned_cols=101  Identities=21%  Similarity=0.185  Sum_probs=61.1

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEec--CChhHHHHHHHcCCCEeeccCCC-------------------------C
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITD--VDVQRLSIARNLGADETAKVSTD-------------------------I  192 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~--~~~~~~~~~~~~g~~~v~~~~~~-------------------------~  192 (319)
                      |+...+|+.|.++...++.+|.+.++.+.  .++.+.+.++.+|+..+..-...                         +
T Consensus        58 vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (293)
T d1o58a_          58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQFEN  137 (293)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHCCBCCCTTTC
T ss_pred             eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEEecCcchhhHHHHHHHHHHhccCCEEeeeccc
Confidence            33346899999999999999997555553  46778889999998654311000                         0


Q ss_pred             cc-hhH----HHHHhhhhcCCCccEEEEccCChHHHHHHHHhh---cC-CCEEEEec
Q 020928          193 ED-VDT----DVGKIQNAMGSGIDVSFDCVGFDKTMSTALNAT---RP-GGKVCLIG  240 (319)
Q Consensus       193 ~~-~~~----~i~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l---~~-~G~~v~~g  240 (319)
                      .. +..    .-.++.+..+..+|.+|-++|+...+.-++..+   .+ +-+++.+.
T Consensus       138 ~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~ve  194 (293)
T d1o58a_         138 PYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVE  194 (293)
T ss_dssp             HHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEE
T ss_pred             cceeeeccccHHHhhhhhcCCCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEEEe
Confidence            00 000    011222333456899999888865555444433   33 35777765

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=87.97  E-value=1.1  Score=32.26  Aligned_cols=104  Identities=21%  Similarity=0.220  Sum_probs=56.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCh--hHHHHHHHcCCCE-----eecc-------CCCCcch--hHHHHH
Q 020928          139 NVMIMGSGPIGLVTLLAARAF-GAPRIIITDVDV--QRLSIARNLGADE-----TAKV-------STDIEDV--DTDVGK  201 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~~--~~~~~~~~~g~~~-----v~~~-------~~~~~~~--~~~i~~  201 (319)
                      +|.|.|-|-+|.++...+... .+ .++++....  +....+-++...+     -+..       +...-.+  .....+
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i-~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~   81 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDI-EIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCe-EEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence            578889999999999877765 34 566664332  3333333322111     0000       0000000  001111


Q ss_pred             hhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCC
Q 020928          202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  244 (319)
                      +.+ ...++|+|+||.|--.....+..++..+-+-+.+..+..
T Consensus        82 i~W-~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~  123 (166)
T d1gado1          82 LKW-DEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK  123 (166)
T ss_dssp             GCH-HHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             CCc-cccCCCEEEEccccccCHHHHHHHhcCCCceEEeecccc
Confidence            211 124799999999976556677788888876666665443

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.86  E-value=0.74  Score=34.46  Aligned_cols=70  Identities=16%  Similarity=0.246  Sum_probs=41.0

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCC-eEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAP-RIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~-~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      .++|||+| +|-+|..++..+...|.. +|++..+++..       .... +.  ....++.+    +.+.....+|.||
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------~~~~-~~--~~~~d~~~----~~~~~~~~~d~vi   67 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------EHPR-LD--NPVGPLAE----LLPQLDGSIDTAF   67 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------CCTT-EE--CCBSCHHH----HGGGCCSCCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------hccc-cc--ccccchhh----hhhccccchheee
Confidence            47999998 599999999988777753 45555443211       0000 11  11123222    2222345789999


Q ss_pred             EccCCh
Q 020928          215 DCVGFD  220 (319)
Q Consensus       215 d~~g~~  220 (319)
                      .++|..
T Consensus        68 ~~~g~~   73 (212)
T d2a35a1          68 CCLGTT   73 (212)
T ss_dssp             ECCCCC
T ss_pred             eeeeee
Confidence            998764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=87.85  E-value=3.5  Score=29.58  Aligned_cols=96  Identities=19%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             cCCCCCCeEEEEC--CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCC-EeeccCCCCcchhHHHHHhhh
Q 020928          132 ANVGPETNVMIMG--SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGAD-ETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       132 ~~~~~~~~vlI~G--~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      .++.++.+||=.+  .|.+|+   ..+ ..|+ .++.++.+++..+.+++    ++.. .+...   ..+.  .+.. ..
T Consensus        37 ~~~~~g~~vLDl~~G~G~~~i---~a~-~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~---~~d~--~~~~-~~  105 (171)
T d1ws6a1          37 LRYPRRGRFLDPFAGSGAVGL---EAA-SEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVAL---PVEV--FLPE-AK  105 (171)
T ss_dssp             HHCTTCCEEEEETCSSCHHHH---HHH-HTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECS---CHHH--HHHH-HH
T ss_pred             ccccCCCeEEEeccccchhhh---hhh-hccc-hhhhcccCHHHHhhhhHHHHhhccccceeee---ehhc--cccc-cc
Confidence            3577888988875  455554   333 3588 68889999988877654    4543 23221   1111  1111 11


Q ss_pred             hcCCCccEEEE-c---cCChHHHHHHHH--hhcCCCEEEE
Q 020928          205 AMGSGIDVSFD-C---VGFDKTMSTALN--ATRPGGKVCL  238 (319)
Q Consensus       205 ~~~~~~d~v~d-~---~g~~~~~~~~~~--~l~~~G~~v~  238 (319)
                      ..+..||+||- .   .+-...+..+..  .++++|.++.
T Consensus       106 ~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivi  145 (171)
T d1ws6a1         106 AQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             HTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEE
T ss_pred             ccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEE
Confidence            23457999973 1   222234444433  4788887664

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=87.65  E-value=0.99  Score=36.95  Aligned_cols=33  Identities=15%  Similarity=0.032  Sum_probs=26.3

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +.+||+| +|-+|..++..+...|. .|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            5688998 69999999998888898 788887743

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.59  E-value=0.3  Score=36.95  Aligned_cols=30  Identities=27%  Similarity=0.631  Sum_probs=25.6

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      |+|+|+|+.|+.+...|.+.|. +|++++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            6788999999999999999998 67777654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.56  E-value=0.27  Score=39.62  Aligned_cols=32  Identities=25%  Similarity=0.512  Sum_probs=27.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      .|+|+|||..|++++..++..|. .+++.+..+
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAG   40 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence            47889999999999999999999 577887654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=87.50  E-value=0.23  Score=39.30  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=26.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +|+|+|+|..|+.+...+...|. +|.+++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            48999999999999999999999 68888654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.36  E-value=0.32  Score=37.24  Aligned_cols=31  Identities=29%  Similarity=0.487  Sum_probs=26.5

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      |+|+|+|+.|+.+...|.++|. +|++++..+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            6788999999999999999998 677786543

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=87.02  E-value=0.26  Score=40.84  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=25.4

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      +|||+| +|-+|..++..+...|..+|+.++.
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            689998 6999999998888888876777754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.88  E-value=1  Score=35.32  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=27.4

Q ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          137 ETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       137 ~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      ..+|||+| +|-+|..++..+...|. .|+++++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCC
Confidence            36799998 59999999998888898 577776643

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.86  E-value=0.31  Score=37.02  Aligned_cols=31  Identities=26%  Similarity=0.577  Sum_probs=26.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      -++|+|+|+.|+.+...|..+|. +|.+++..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            47888999999999999999998 67777654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=86.67  E-value=0.52  Score=33.44  Aligned_cols=39  Identities=28%  Similarity=0.448  Sum_probs=31.0

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHH
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRL  174 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~  174 (319)
                      +..+|.|+|+|.+|..+...+...| +..++-+|..+++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            4568999999999998888777766 45789998877654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.61  E-value=0.56  Score=35.17  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=34.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  179 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~  179 (319)
                      +|.|+|.|-+|+.....+...|. .|++.|.++++.+.+.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            47889999999888887777898 79999999988887765

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.58  E-value=0.34  Score=36.87  Aligned_cols=30  Identities=30%  Similarity=0.557  Sum_probs=24.8

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      |+|+|+|+.|+.|...|.++|. +|++++..
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~-kV~lie~~   37 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKR   37 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            6788999999998888888898 57777654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=86.54  E-value=3.4  Score=27.96  Aligned_cols=91  Identities=16%  Similarity=0.108  Sum_probs=57.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEccC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDCVG  218 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~~g  218 (319)
                      .++|+|.|.+|..++..++  +. .+++++..+++.+.++..|...+ .-+..++   +.+++   ..-..++.++-+..
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i-~Gd~~~~---~~L~~---a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFV-HGDPTRV---SDLEK---ANVRGARAVIVNLE   71 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEE-ESCTTSH---HHHHH---TTCTTCSEEEECCS
T ss_pred             EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCcccc-ccccCCH---HHHHH---hhhhcCcEEEEecc
Confidence            5788899999998877664  33 46677888888888888776443 2233222   22322   23356888888777


Q ss_pred             ChH---HHHHHHHhhcCCCEEEEe
Q 020928          219 FDK---TMSTALNATRPGGKVCLI  239 (319)
Q Consensus       219 ~~~---~~~~~~~~l~~~G~~v~~  239 (319)
                      .+.   ......+.+.|..+++..
T Consensus        72 ~d~~n~~~~~~~r~~~~~~~iia~   95 (129)
T d2fy8a1          72 SDSETIHCILGIRKIDESVRIIAE   95 (129)
T ss_dssp             SHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred             chhhhHHHHHHHHHHCCCceEEEE
Confidence            653   233445566777766654

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=86.21  E-value=2.1  Score=30.89  Aligned_cols=104  Identities=19%  Similarity=0.200  Sum_probs=58.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHc-CCCeEEEecC---ChhHHHHHHHcCCCEe------------eccCCCCcch--hHHHH
Q 020928          139 NVMIMGSGPIGLVTLLAARAF-GAPRIIITDV---DVQRLSIARNLGADET------------AKVSTDIEDV--DTDVG  200 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~---~~~~~~~~~~~g~~~v------------~~~~~~~~~~--~~~i~  200 (319)
                      +|.|.|-|-+|.++...+... .+ .++++..   +.+....+-++...+-            +.++...-.+  .....
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~-~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~   81 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKV-DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   81 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSS-EEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCc-EEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCChh
Confidence            688999999999998866644 45 5666533   3455555544332110            0000000000  00111


Q ss_pred             HhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCC
Q 020928          201 KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       201 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  244 (319)
                      ++.+ ...++|+|+||.|--.....+..++..+-+-+.+..+..
T Consensus        82 ~i~W-~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~  124 (169)
T d1u8fo1          82 KIKW-GDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSA  124 (169)
T ss_dssp             GCCT-TTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCS
T ss_pred             hCCc-cccCCCEEEEecceeccHHHHHHHHhcCCceEeeccccc
Confidence            2222 235799999999975455667778887777677765443

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.11  E-value=0.36  Score=36.53  Aligned_cols=29  Identities=24%  Similarity=0.608  Sum_probs=25.0

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      |+|+|+|+.|+.|...|.+.|. +|++++.
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~   34 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEK   34 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEec
Confidence            6788999999999999999998 5777764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.04  E-value=0.56  Score=31.97  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=29.4

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +.+.+++|+|+|.+|+-+++.+..+|. .|..+.+++
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence            345789999999999999999999998 666676543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=86.02  E-value=0.49  Score=37.70  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=28.9

Q ss_pred             CCCeEEEECC-C--HHHHHHHHHHHHcCCCeEEEecCChh
Q 020928          136 PETNVMIMGS-G--PIGLVTLLAARAFGAPRIIITDVDVQ  172 (319)
Q Consensus       136 ~~~~vlI~G~-g--~vG~~ai~la~~~g~~~vv~v~~~~~  172 (319)
                      +|+++||+|+ |  ++|.++.+.+...|+ +|+...+++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchh
Confidence            5789999985 4  799999999999999 6776666543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.95  E-value=4.2  Score=28.52  Aligned_cols=43  Identities=14%  Similarity=0.142  Sum_probs=28.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLG  181 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g  181 (319)
                      ++|-++|.|.+|...+.-+...|. .++.-+..++..++.++.+
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~g~-~~~~~~~~~~~~~~~~~~~   43 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARRFP-TLVWNRTFEKALRHQEEFG   43 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSC-EEEECSSTHHHHHHHHHHC
T ss_pred             CeEEEEeHHHHHHHHHHHHHhCCC-EEEEeCCHHHHHHHHHHcC
Confidence            578899999999877776655675 5544444444445555544

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=85.91  E-value=0.56  Score=33.95  Aligned_cols=83  Identities=17%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             HHHhcC-CCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          128 ACRRAN-VGPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       128 ~l~~~~-~~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      .++..+ --.|++++|+| +..+|.-+..++...|+ .|.+..+...                     +..+    ..  
T Consensus        27 lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t~---------------------~l~~----~~--   78 (166)
T d1b0aa1          27 LLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFTK---------------------NLRH----HV--   78 (166)
T ss_dssp             HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSCS---------------------CHHH----HH--
T ss_pred             HHHHcCcccccceEEEEeccccccHHHHHHHHHhhc-cccccccccc---------------------hhHH----HH--
Confidence            344433 34689999999 67899999999999999 5555432211                     1111    11  


Q ss_pred             cCCCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc
Q 020928          206 MGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       206 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                        ...|+++-++|.+..+.  .+.++++..++.+|..
T Consensus        79 --~~ADivI~a~G~p~~i~--~~~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          79 --ENADLLIVAVGKPGFIP--GDWIKEGAIVIDVGIN  111 (166)
T ss_dssp             --HHCSEEEECSCCTTCBC--TTTSCTTCEEEECCCE
T ss_pred             --hhhhHhhhhccCccccc--ccccCCCcEEEecCce
Confidence              24688888888764332  3467788888888753

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.89  E-value=0.57  Score=38.06  Aligned_cols=100  Identities=17%  Similarity=0.153  Sum_probs=63.4

Q ss_pred             HHHhcCCCCCCeEEEECCCHHHHHHHHH-HHHcCCCeEEEecCChhHHHHHH----HcCCCEeeccCCCCcchhHHHHHh
Q 020928          128 ACRRANVGPETNVMIMGSGPIGLVTLLA-ARAFGAPRIIITDVDVQRLSIAR----NLGADETAKVSTDIEDVDTDVGKI  202 (319)
Q Consensus       128 ~l~~~~~~~~~~vlI~G~g~vG~~ai~l-a~~~g~~~vv~v~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~i~~~  202 (319)
                      +.+...-+..+++.|+|+|..+..-++. +..+..++|.+.++++++.+...    ..+.....+       ..+.   .
T Consensus       116 a~~~la~~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~-------~~~a---~  185 (320)
T d1omoa_         116 AAKYLARKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQ-------PAEE---A  185 (320)
T ss_dssp             HHHHHSCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEEC-------CHHH---H
T ss_pred             HHHHhccCCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccc-------hhhh---h
Confidence            3344444566789999999999766664 44578889999999888765442    233222211       1111   1


Q ss_pred             hhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          203 QNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       203 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                           .+.|+|+-|..+...+ .-.+.++++-.+..+|...
T Consensus       186 -----~~aDiV~taT~s~~P~-~~~~~l~~G~hv~~iGs~~  220 (320)
T d1omoa_         186 -----SRCDVLVTTTPSRKPV-VKAEWVEEGTHINAIGADG  220 (320)
T ss_dssp             -----TSSSEEEECCCCSSCC-BCGGGCCTTCEEEECSCCS
T ss_pred             -----ccccEEEEeccCcccc-cchhhcCCCCeEeecCCcc
Confidence                 3589999888764211 1124688988999998654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.74  E-value=0.39  Score=35.60  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=25.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      ..|+|+|+|+.|+.+...|.++|. ++++++.
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~   36 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEG   36 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CCEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEe
Confidence            578999999999998888888998 4666653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=0.43  Score=36.03  Aligned_cols=30  Identities=27%  Similarity=0.513  Sum_probs=25.6

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      ++|+|+|+.|+.+...|.++|. +|++++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            6788999999999999999998 67777643

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.70  E-value=0.93  Score=35.43  Aligned_cols=46  Identities=22%  Similarity=0.184  Sum_probs=33.8

Q ss_pred             cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH
Q 020928          132 ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  179 (319)
Q Consensus       132 ~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~  179 (319)
                      ....+|.++|=+|+|+ |...+..+.... ..|++++.++...+.+++
T Consensus        50 ~g~~~g~~vLDiGcG~-g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          50 TGEVSGRTLIDIGSGP-TVYQLLSACSHF-EDITMTDFLEVNRQELGR   95 (263)
T ss_dssp             TSCSCCSEEEEETCTT-CCGGGTTGGGGC-SEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCcEEEEeccCC-CHHHHHHhcccC-CeEEEEeCCHHHHHHHHH
Confidence            4566789999999876 544433444434 489999999999998876

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.63  E-value=1.3  Score=35.81  Aligned_cols=30  Identities=30%  Similarity=0.441  Sum_probs=25.2

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEec
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITD  168 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~  168 (319)
                      ++|||+| +|-+|..++..+...|. .|++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence            6899998 69999999998888897 566664

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.58  E-value=0.51  Score=38.77  Aligned_cols=35  Identities=20%  Similarity=0.193  Sum_probs=28.4

Q ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          136 PETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       136 ~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      +.-+|||+| +|-+|..++..+...|. .|+++++.+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCC
Confidence            355899998 69999999999988998 677776543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=85.47  E-value=2.1  Score=30.42  Aligned_cols=128  Identities=13%  Similarity=0.097  Sum_probs=69.7

Q ss_pred             eEEEECCCHHHHH-HHHHHHHc-CCCeEEEecCChhH-HHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          139 NVMIMGSGPIGLV-TLLAARAF-GAPRIIITDVDVQR-LSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       139 ~vlI~G~g~vG~~-ai~la~~~-g~~~vv~v~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      +|.|+|+|.+|.- .+...+.. +++.+.+.++++++ .++.++++...   ++    +    +..+.    ..+|+|+-
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~----~----~~~l~----~~~D~V~I   67 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPY---AD----S----LSSLA----ASCDAVFV   67 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCB---CS----S----HHHHH----TTCSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccc---cc----c----chhhh----hhcccccc
Confidence            5789999999964 45555544 66444455565554 44556676532   11    1    22222    25899999


Q ss_pred             ccCChHHHHHHHHhhcCCCEEEEecccCCcccccc----hHHHhcCcEEE-Ee-ecc-CCCHHHHHHHHHcCCC
Q 020928          216 CVGFDKTMSTALNATRPGGKVCLIGLAKTEMTVAL----TPAAAREVDVI-GI-FRY-RSTWPLCIEFLRSGKI  282 (319)
Q Consensus       216 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~----~~~~~~~~~i~-~~-~~~-~~~~~~~~~~~~~g~~  282 (319)
                      +.......+.+..+|..+-. +.+.-+.....-..    ...-.++..+. ++ ..+ +...+.+.+++.+|.+
T Consensus        68 ~tp~~~h~~~~~~al~~gk~-V~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~~~~~~~~~~~i~~g~i  140 (164)
T d1tlta1          68 HSSTASHFDVVSTLLNAGVH-VCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFFVGCARHFIECVQNQTV  140 (164)
T ss_dssp             CSCTTHHHHHHHHHHHTTCE-EEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGHHHHHHHHHHHHHHTCC
T ss_pred             cccchhccccccccccccce-eeccccccCCHHHHHHHHHHHHHcCCcEEEEeccccCHHHHHHHHHHHHCCCC
Confidence            99877677778788877654 44432221111111    11222333332 22 122 2233467778888888

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.43  E-value=0.35  Score=38.87  Aligned_cols=32  Identities=19%  Similarity=0.419  Sum_probs=26.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      .++|+|||..|+.++..+...|. .|.+++.++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            47899999999999998888898 688887643

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=85.37  E-value=1.6  Score=33.91  Aligned_cols=101  Identities=16%  Similarity=0.177  Sum_probs=60.4

Q ss_pred             HhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHH----HHcCCCEeeccCCCCcchhHHHHHhhhh
Q 020928          130 RRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA----RNLGADETAKVSTDIEDVDTDVGKIQNA  205 (319)
Q Consensus       130 ~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~i~~~~~~  205 (319)
                      +...+....+||=+|+|. |..++.++++.---++++++. ++..+.+    ++.+....+....  .++.       +.
T Consensus        75 ~~~d~~~~~~vlDvG~G~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~--~d~~-------~~  143 (256)
T d1qzza2          75 DAYDWSAVRHVLDVGGGN-GGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAE--GDFF-------KP  143 (256)
T ss_dssp             HTSCCTTCCEEEEETCTT-SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE--CCTT-------SC
T ss_pred             hcCCCccCCEEEEECCCC-CHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeee--eecc-------cc
Confidence            345667778898899877 889999999873337888875 4444333    3334222111111  1111       11


Q ss_pred             cCCCccEEEEc-----cCCh---HHHHHHHHhhcCCCEEEEecc
Q 020928          206 MGSGIDVSFDC-----VGFD---KTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       206 ~~~~~d~v~d~-----~g~~---~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      ...++|+++-.     ...+   ..++.+.+.|+|+|+++.+..
T Consensus       144 ~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         144 LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            13468887632     1111   346778899999999998763

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=85.33  E-value=1.4  Score=33.06  Aligned_cols=95  Identities=15%  Similarity=0.188  Sum_probs=60.3

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCEeeccCCCCcchhHHHHHhhhhcCCCcc
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADETAKVSTDIEDVDTDVGKIQNAMGSGID  211 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d  211 (319)
                      ++++++=+|+|+ |.-.+-+|-..--..+.-+++...+..++++    ++...+..+....++.       .  ....+|
T Consensus        65 ~~~~ilDiGsGa-G~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-------~--~~~~fD  134 (207)
T d1jsxa_          65 QGERFIDVGTGP-GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF-------P--SEPPFD  134 (207)
T ss_dssp             CSSEEEEETCTT-TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS-------C--CCSCEE
T ss_pred             cCCceeeeeccC-CceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhh-------c--cccccc
Confidence            456777678766 6666666665543489999999999888865    6765443322222221       1  134688


Q ss_pred             EEEE-ccCCh-HHHHHHHHhhcCCCEEEEec
Q 020928          212 VSFD-CVGFD-KTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       212 ~v~d-~~g~~-~~~~~~~~~l~~~G~~v~~g  240 (319)
                      +|.. +++.. ..+..+.+.++++|+++.+-
T Consensus       135 ~V~sRA~~~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         135 GVISRAFASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             EEECSCSSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             eehhhhhcCHHHHHHHHHHhcCCCcEEEEEC
Confidence            8874 44432 34556666788899988764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=85.06  E-value=0.48  Score=37.79  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=25.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      .|+|+|+|.+|+++...+...|.+.|++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            58999999999877776666787568888654

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.96  E-value=4.4  Score=28.99  Aligned_cols=34  Identities=6%  Similarity=-0.123  Sum_probs=27.7

Q ss_pred             CCCccEEEEccCChHHHHHHHHhhcCCCEEEEec
Q 020928          207 GSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIG  240 (319)
Q Consensus       207 ~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  240 (319)
                      ....++++||.++.+......+.|..+-.+++..
T Consensus        82 ~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTAN  115 (168)
T d1ebfa1          82 SPKPVILVDNTSSAYIAGFYTKFVENGISIATPN  115 (168)
T ss_dssp             CSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCC
T ss_pred             CCCceEEEEecCChHHHHHHHHHHHcCCeEEecC
Confidence            3467899999999887777888888888888654

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=84.91  E-value=2.1  Score=30.96  Aligned_cols=104  Identities=17%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHc---CCCeEEEecC--ChhHHHHHHHcCCCE-----eecc-------CCCCcch--hHHH
Q 020928          139 NVMIMGSGPIGLVTLLAARAF---GAPRIIITDV--DVQRLSIARNLGADE-----TAKV-------STDIEDV--DTDV  199 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~---g~~~vv~v~~--~~~~~~~~~~~g~~~-----v~~~-------~~~~~~~--~~~i  199 (319)
                      +|.|.|-|-+|..+...+...   .+ .++++..  +.+....+-++...+     -+.+       +...-.+  ....
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i-~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDI-EVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTC-EEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCE-EEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            688999999999998866532   35 5666633  234444443332111     0000       0000000  0011


Q ss_pred             HHhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccCC
Q 020928          200 GKIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAKT  244 (319)
Q Consensus       200 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  244 (319)
                      .++.+ ...++|+|+||.|--.....+..++..+-+-+.+..+..
T Consensus        81 ~~i~W-~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~k  124 (169)
T d1hdgo1          81 SKLPW-KDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAK  124 (169)
T ss_dssp             GGSCH-HHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             hhCCc-cccCCCEEEEecceeccccchhhhccCCCceEEEecccC
Confidence            11111 123699999999985556777778888766666665443

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=84.90  E-value=1.6  Score=33.02  Aligned_cols=45  Identities=18%  Similarity=0.255  Sum_probs=34.9

Q ss_pred             HHHHHh-cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          126 VHACRR-ANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       126 ~~~l~~-~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +.+++. ..--.+.+++++|+|+.|....++....+.+++..+|+.
T Consensus        14 l~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          14 LNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            344554 333456788889999999999999999999999998763

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.66  E-value=1.3  Score=31.25  Aligned_cols=69  Identities=13%  Similarity=0.232  Sum_probs=41.3

Q ss_pred             CCCeEEEEC--CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH----cCCCE-eeccCCCCcchhHHHHHhhhhcCC
Q 020928          136 PETNVMIMG--SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN----LGADE-TAKVSTDIEDVDTDVGKIQNAMGS  208 (319)
Q Consensus       136 ~~~~vlI~G--~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~----~g~~~-v~~~~~~~~~~~~~i~~~~~~~~~  208 (319)
                      .|.+||=.+  +|.+|+.   .+ .+|++.|+.++.+++..+.+++    ++... +..+.   .|....+.    ....
T Consensus        14 ~g~~vlDl~~GtG~~~ie---a~-~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~---~D~~~~l~----~~~~   82 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIE---AV-SRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK---MEAERAID----CLTG   82 (152)
T ss_dssp             CSCEEEEETCTTCHHHHH---HH-HTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC---SCHHHHHH----HBCS
T ss_pred             CCCeEEEcCCccCHHHHH---HH-HhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc---cccccccc----cccc
Confidence            577887774  5666553   33 3688899999999887766554    45432 22221   23333332    2356


Q ss_pred             CccEEEE
Q 020928          209 GIDVSFD  215 (319)
Q Consensus       209 ~~d~v~d  215 (319)
                      .+|+||-
T Consensus        83 ~fDiIf~   89 (152)
T d2esra1          83 RFDLVFL   89 (152)
T ss_dssp             CEEEEEE
T ss_pred             ccceeEe
Confidence            7999874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=84.66  E-value=0.5  Score=36.96  Aligned_cols=32  Identities=13%  Similarity=0.200  Sum_probs=26.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCCh
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDV  171 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~  171 (319)
                      -|+|+|+|.+|+++...+...|. +|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            38899999999988887777898 688887643

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.56  E-value=0.53  Score=38.26  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=25.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCC-CeEEEecCCh
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDV  171 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~  171 (319)
                      ++|+|+|+|..|++++..++..|. ..|++.++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            589999999999888765554443 3688887664

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=84.47  E-value=0.39  Score=39.08  Aligned_cols=30  Identities=30%  Similarity=0.522  Sum_probs=23.4

Q ss_pred             EEEECCCHHHHHHHHHH-----HHcCCCeEEEecCC
Q 020928          140 VMIMGSGPIGLVTLLAA-----RAFGAPRIIITDVD  170 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la-----~~~g~~~vv~v~~~  170 (319)
                      |+|+|+|.+|+++..++     +..|. .|+++++.
T Consensus        10 V~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~   44 (360)
T d1pn0a1          10 VLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKR   44 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCC
Confidence            78999999998877765     35798 57777653

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.28  E-value=0.44  Score=36.39  Aligned_cols=29  Identities=28%  Similarity=0.590  Sum_probs=25.1

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDV  169 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~  169 (319)
                      |+|+|+|+.|+.|...|.++|. +|++++.
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~-kV~viE~   34 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDF   34 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCC-CEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            6888999999999999999999 5777763

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.02  E-value=0.48  Score=38.32  Aligned_cols=30  Identities=17%  Similarity=0.412  Sum_probs=25.8

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      |+|+|+|..|+.+...++..|. +|.+++.+
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEAR   31 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            6889999999999999889998 68888653

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.96  E-value=0.82  Score=33.84  Aligned_cols=88  Identities=16%  Similarity=0.190  Sum_probs=55.5

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEE
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFD  215 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d  215 (319)
                      .+.+|.|+|.|.+|..+.++++.+|. +|+..++.....       ......+        ..+.++.    ...|++.-
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-------~~~~~~~--------~~l~ell----~~sDii~i  102 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENKLP-------LGNATQV--------QHLSDLL----NMSDVVSL  102 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCC-------CTTCEEC--------SCHHHHH----HHCSEEEE
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccccch-------hhhhhhh--------hhHHHHH----hhccceee
Confidence            57899999999999999999999999 788887543211       0111111        1122222    13577766


Q ss_pred             ccCCh-H----HHHHHHHhhcCCCEEEEecccC
Q 020928          216 CVGFD-K----TMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       216 ~~g~~-~----~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +..-. +    .-...++.|+++..+|.++...
T Consensus       103 ~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~  135 (188)
T d1sc6a1         103 HVPENPSTKNMMGAKEISLMKPGSLLINASRGT  135 (188)
T ss_dssp             CCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSS
T ss_pred             cccCCcchhhhccHHHHhhCCCCCEEEEcCcHH
Confidence            55422 1    1246777888888888876543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=83.84  E-value=0.95  Score=35.25  Aligned_cols=31  Identities=26%  Similarity=0.436  Sum_probs=26.7

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      +|||+| +|-+|..++..++..|. .|++++++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~   34 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   34 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEeech
Confidence            589998 59999999999999998 78888764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.77  E-value=0.56  Score=37.47  Aligned_cols=30  Identities=30%  Similarity=0.638  Sum_probs=25.6

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      |+|+|+|..|+.+...|...|+ +|++++..
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~-~V~lvEK~   48 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGA-KVILIEKE   48 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            7899999999999888888998 57777653

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.50  E-value=1.1  Score=33.22  Aligned_cols=39  Identities=21%  Similarity=0.355  Sum_probs=32.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  179 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~  179 (319)
                      +|.|+|.|-+|+.....+ +.|. .|+.+|.++++.+.+++
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence            578899999998876655 4688 79999999998887765

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.48  E-value=1.6  Score=29.80  Aligned_cols=88  Identities=25%  Similarity=0.264  Sum_probs=50.5

Q ss_pred             CCCeEEEECCCHH-----------HHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhh
Q 020928          136 PETNVMIMGSGPI-----------GLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQN  204 (319)
Q Consensus       136 ~~~~vlI~G~g~v-----------G~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~  204 (319)
                      ..++|||+|+|+.           +.-++..+|..|+ .++.+.++++....-.. -++.+.. ..-.   .+.+.++.+
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d-~aD~lYf-ePlt---~e~v~~Ii~   79 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPE-MADATYI-EPIH---WEVVRKIIE   79 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGG-GSSEEEC-SCCC---HHHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChh-hcceeee-ecCC---HHHHHHHHH
Confidence            4578999998743           3455556677899 78888888766432111 1344332 1111   223333332


Q ss_pred             hcCCCccEEEEccCChHHHHHHHHhhc
Q 020928          205 AMGSGIDVSFDCVGFDKTMSTALNATR  231 (319)
Q Consensus       205 ~~~~~~d~v~d~~g~~~~~~~~~~~l~  231 (319)
                        ..+.|.|+-++|++-.++...++..
T Consensus        80 --~E~pd~il~~~GGQtalnla~~L~~  104 (127)
T d1a9xa3          80 --KERPDAVLPTMGGQTALNCALELER  104 (127)
T ss_dssp             --HHCCSEEECSSSHHHHHHHHHHHHH
T ss_pred             --HhCcCCeEEEeeeehHhHHHHHHHH
Confidence              2368889989998755555555443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=83.36  E-value=0.9  Score=32.91  Aligned_cols=28  Identities=32%  Similarity=0.472  Sum_probs=24.8

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCe
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAFGAPR  163 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~g~~~  163 (319)
                      .+++|+|+|+|.+|+-++..++.+|.+.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v   29 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEG   29 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCce
Confidence            4689999999999999999999999863

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=83.30  E-value=1.9  Score=30.06  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=26.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCC-CeEEEecCChhH
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGA-PRIIITDVDVQR  173 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~-~~vv~v~~~~~~  173 (319)
                      +|.|+|+|.+|..+...+...+. ..++-+|..+++
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            68889999999988887777664 468888877654

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.26  E-value=4.8  Score=33.22  Aligned_cols=49  Identities=20%  Similarity=0.314  Sum_probs=35.2

Q ss_pred             CeEEE-ECCCHHHHHHHHHHHHcCCCeEEEec-----CChhHHHHHHHcCCCEee
Q 020928          138 TNVMI-MGSGPIGLVTLLAARAFGAPRIIITD-----VDVQRLSIARNLGADETA  186 (319)
Q Consensus       138 ~~vlI-~G~g~vG~~ai~la~~~g~~~vv~v~-----~~~~~~~~~~~~g~~~v~  186 (319)
                      .++++ .++|.-|.++...|+++|.+-+|.+.     ....+...++.+|+..+.
T Consensus       103 ~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~  157 (390)
T d1qopb_         103 SEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIP  157 (390)
T ss_dssp             CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEE
T ss_pred             ceeeeehhHHHHHHHHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEE
Confidence            45666 47899999999999999996444442     234556777889986553

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=83.23  E-value=1  Score=31.56  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=29.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHH
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRL  174 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~  174 (319)
                      .+|.|+|+|.+|..+..++...+...++.++..+++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~   38 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVP   38 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccc
Confidence            4788999999998888777777776788888766543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.00  E-value=0.66  Score=35.27  Aligned_cols=32  Identities=25%  Similarity=0.412  Sum_probs=25.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHc--CCCeEEEecCCh
Q 020928          139 NVMIMGSGPIGLVTLLAARAF--GAPRIIITDVDV  171 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~--g~~~vv~v~~~~  171 (319)
                      +|+|+|+|+.|+.++..++..  |. .|.+.+..+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence            799999999999998865543  66 677777654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.96  E-value=2.4  Score=31.45  Aligned_cols=43  Identities=23%  Similarity=0.352  Sum_probs=31.4

Q ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHH
Q 020928          135 GPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARN  179 (319)
Q Consensus       135 ~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~  179 (319)
                      -.|.+||=.|+|. |.+++.++ ..|+..|++++.+++..+.+++
T Consensus        45 l~g~~vLDlg~Gt-G~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~   87 (201)
T d1wy7a1          45 IEGKVVADLGAGT-GVLSYGAL-LLGAKEVICVEVDKEAVDVLIE   87 (201)
T ss_dssp             STTCEEEEETCTT-CHHHHHHH-HTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECcCcc-hHHHHHHH-HcCCCEEEEEcCcHHHHHHHHH
Confidence            3578888887654 44455544 4687789999999998887775

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.87  E-value=2.8  Score=30.20  Aligned_cols=85  Identities=14%  Similarity=0.104  Sum_probs=53.5

Q ss_pred             HHHHHhcCC-CCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhh
Q 020928          126 VHACRRANV-GPETNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       126 ~~~l~~~~~-~~~~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      +..+++.++ -.|++++|+| +..+|.-+..++...|+ .|.+.........                         +. 
T Consensus        27 i~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t~~l~-------------------------~~-   79 (170)
T d1a4ia1          27 LELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHLD-------------------------EE-   79 (170)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSHH-------------------------HH-
T ss_pred             HHHHHHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEecccccHH-------------------------HH-
Confidence            334555444 3789999999 67899999999999998 5665543211111                         11 


Q ss_pred             hhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEeccc
Q 020928          204 NAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLA  242 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  242 (319)
                         -...|+++-++|.+..+.  -+.++++-.++.+|..
T Consensus        80 ---~~~aDivi~a~G~~~~i~--~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          80 ---VNKGDILVVATGQPEMVK--GEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             ---HTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCB
T ss_pred             ---Hhhccchhhccccccccc--cccccCCCeEeccCcc
Confidence               124677777777653322  2466777777777643

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.73  E-value=6.4  Score=28.08  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=58.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHc-CCCeEEEecC---ChhHHHHHHHcCCCEe-----e-------ccCCCCcch--hHHHH
Q 020928          139 NVMIMGSGPIGLVTLLAARAF-GAPRIIITDV---DVQRLSIARNLGADET-----A-------KVSTDIEDV--DTDVG  200 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~---~~~~~~~~~~~g~~~v-----~-------~~~~~~~~~--~~~i~  200 (319)
                      +|.|.|-|-+|.++...+... .+ .++++..   +.+....+-++...+-     +       .++...-.+  .....
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~-~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~   80 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDI-EVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS   80 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCc-EEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence            688999999999998877644 45 5666632   3455555544432110     0       000000000  00111


Q ss_pred             HhhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          201 KIQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       201 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      ++.+ ...++|+|+||.|--.....+..++..+-+-+.+..+.
T Consensus        81 ~i~W-~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~  122 (166)
T d2b4ro1          81 QIPW-GKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPP  122 (166)
T ss_dssp             GCCH-HHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             Hccc-cccCCCEEEEecccccchhhhhhhhccCCCEEEEeccc
Confidence            1111 12479999999998655566778888777666666543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=82.63  E-value=1.4  Score=31.06  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=29.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CCeEEEecCChhHH
Q 020928          138 TNVMIMGSGPIGLVTLLAARAFG-APRIIITDVDVQRL  174 (319)
Q Consensus       138 ~~vlI~G~g~vG~~ai~la~~~g-~~~vv~v~~~~~~~  174 (319)
                      ++|.|+|+|.+|..+...+...| +..++-++..+++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            57889999999988888776666 45788888877763

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.53  E-value=1  Score=31.85  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=44.1

Q ss_pred             eEEEEC-CCHHHHHHHH-HHHHc--CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          139 NVMIMG-SGPIGLVTLL-AARAF--GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~-la~~~--g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      +|.|.| +|.+|+-.++ |+...  -...++...++...-.... ++........  ..+.    ..     -.++|++|
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-~~~~~~~~~~--~~~~----~~-----~~~~DivF   70 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-FGGTTGTLQD--AFDL----EA-----LKALDIIV   70 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-GGTCCCBCEE--TTCH----HH-----HHTCSEEE
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-ccCCceeeec--ccch----hh-----hhcCcEEE
Confidence            688998 5999999997 45433  2224554444332211000 0000000000  0010    01     13699999


Q ss_pred             EccCChHHHHHHHHhh-cCCC--EEEEecc
Q 020928          215 DCVGFDKTMSTALNAT-RPGG--KVCLIGL  241 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l-~~~G--~~v~~g~  241 (319)
                      -|++.. ........+ ..+-  .++..+.
T Consensus        71 ~a~~~~-~s~~~~~~~~~~g~~~~VID~Ss   99 (146)
T d1t4ba1          71 TCQGGD-YTNEIYPKLRESGWQGYWIDAAS   99 (146)
T ss_dssp             ECSCHH-HHHHHHHHHHHTTCCCEEEECSS
T ss_pred             EecCch-HHHHhhHHHHhcCCCeecccCCc
Confidence            999976 444444444 4442  3666553

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.30  E-value=0.9  Score=31.98  Aligned_cols=91  Identities=16%  Similarity=0.183  Sum_probs=49.9

Q ss_pred             CeEEEECC-CHHHHHHHHHHHHcCC--CeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEE
Q 020928          138 TNVMIMGS-GPIGLVTLLAARAFGA--PRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSF  214 (319)
Q Consensus       138 ~~vlI~G~-g~vG~~ai~la~~~g~--~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~  214 (319)
                      =+|.|.|+ |-+|+-.++++...+.  -.+..+.++.+.       |-. + .....  +.  .+..+....-.+.|++|
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~-------Gk~-i-~~~~~--~~--~~~~~~~~~~~~~d~vf   69 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA-------GQR-M-GFAES--SL--RVGDVDSFDFSSVGLAF   69 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT-------TCE-E-EETTE--EE--ECEEGGGCCGGGCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC-------Ccc-e-eeccc--cc--hhccchhhhhccceEEE
Confidence            36899995 9999999998865432  134444333221       211 1 00000  00  00111111235689999


Q ss_pred             EccCChHHHHHHHHhhcCCCEEEEecc
Q 020928          215 DCVGFDKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       215 d~~g~~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      -+.+........-+....+.++++.+.
T Consensus        70 ~a~p~~~s~~~~~~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          70 FAAAAEVSRAHAERARAAGCSVIDLSG   96 (144)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             ecCCcchhhhhccccccCCceEEeech
Confidence            999876444555556677777777664

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=82.29  E-value=0.7  Score=36.22  Aligned_cols=30  Identities=20%  Similarity=0.481  Sum_probs=25.1

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      |+|+|+|.+|+.+...+...|. +|++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            7889999999888887778898 68888653

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=82.08  E-value=3.3  Score=29.85  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=54.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC--hhHHHHHHHcCCCEe-----ecc-------CCCCc--chhHHHHH
Q 020928          139 NVMIMGSGPIGLVTLLAARAF-GAPRIIITDVD--VQRLSIARNLGADET-----AKV-------STDIE--DVDTDVGK  201 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~-g~~~vv~v~~~--~~~~~~~~~~g~~~v-----~~~-------~~~~~--~~~~~i~~  201 (319)
                      +|.|.|-|-+|.++...+-.. .+ .++++...  .+....+-++...+-     +.+       +...-  .......+
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~-~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~   81 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDI-EVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-EEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence            578899999999888766543 44 56666332  223333333221110     000       00000  00001111


Q ss_pred             hhhhcCCCccEEEEccCChHHHHHHHHhhcCCCEEEEecccC
Q 020928          202 IQNAMGSGIDVSFDCVGFDKTMSTALNATRPGGKVCLIGLAK  243 (319)
Q Consensus       202 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  243 (319)
                      +.+ ...++|+|+||.|.-...+.+..+|..+-+-+.+..+.
T Consensus        82 i~W-~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~  122 (171)
T d3cmco1          82 LAW-GEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPA  122 (171)
T ss_dssp             CCT-GGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             ccc-cccCCcEEEEecCccCCHHHHHHHHhCCCceEEEeccc
Confidence            111 13479999999997655667777888776666666543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.98  E-value=1.5  Score=31.17  Aligned_cols=137  Identities=14%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCCC--eEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEE
Q 020928          137 ETNVMIMGS-GPIGLVTLLAARAFGAP--RIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVS  213 (319)
Q Consensus       137 ~~~vlI~G~-g~vG~~ai~la~~~g~~--~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v  213 (319)
                      |-+|.|+|+ |-+|.-.++++....+.  .+....+ .+.      .|-..... ... ..    .....+......|++
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s-~~s------~G~~~~~~-~~~-~~----~~~~~~~~~~~~d~~   67 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS-ARS------AGKSLKFK-DQD-IT----IEETTETAFEGVDIA   67 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEEC-GGG------TTCEEEET-TEE-EE----EEECCTTTTTTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecc-ccc------cccccccc-CCc-cc----ccccchhhhhhhhhh
Confidence            457999995 99999999999877532  3333332 221      12111100 000 00    000011123468999


Q ss_pred             EEccCChHHHHHHHHhhcCCCEEEEecccC---CcccccchH----HHhcCcEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 020928          214 FDCVGFDKTMSTALNATRPGGKVCLIGLAK---TEMTVALTP----AAAREVDVIGIFRY-RSTWPLCIEFLRSGKIDVK  285 (319)
Q Consensus       214 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~---~~~~~~~~~----~~~~~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~  285 (319)
                      |-+.+.........+.+..+-+++..+..-   .+.+.....    ...+...++....- ...+.-+..+.++|.+++.
T Consensus        68 f~~~~~~~s~~~~~~~~~~~~~VIDlSsdfR~~~~~~~~~pe~n~~~~~~~~~iIAnPgC~tt~i~~l~PL~~~~lik~~  147 (154)
T d2gz1a1          68 LFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNAAWNSVQIAETLHERGLVRPT  147 (154)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGCCSEEECCCTHHHHHHHHHHHHHTTCCSCC
T ss_pred             hhccCccchhhHHhhhccccceehhcChhhhccCCcccccchhhHHHhcCcCceEECCCCHHHHHHHHHHHHHhcCCCcc
Confidence            999887655556666778888999887432   111211111    11122223333322 1123346678888888544


Q ss_pred             C
Q 020928          286 P  286 (319)
Q Consensus       286 ~  286 (319)
                      .
T Consensus       148 ~  148 (154)
T d2gz1a1         148 A  148 (154)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.82  E-value=0.85  Score=36.47  Aligned_cols=44  Identities=18%  Similarity=0.108  Sum_probs=31.8

Q ss_pred             CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCChh--HHHHHHHcCC
Q 020928          138 TNVMIMG-SGPIGLVTLLAARAFGAPRIIITDVDVQ--RLSIARNLGA  182 (319)
Q Consensus       138 ~~vlI~G-~g~vG~~ai~la~~~g~~~vv~v~~~~~--~~~~~~~~g~  182 (319)
                      ++|||+| +|-+|..++..+...|. .|+++++...  ..+.++.++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~~   47 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGI   47 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhcc
Confidence            4799998 59999999998877898 6888776432  3344555543

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=81.71  E-value=2.4  Score=34.37  Aligned_cols=61  Identities=16%  Similarity=0.110  Sum_probs=39.8

Q ss_pred             HHHHHhcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEec-C--ChhHHHHHHHcCCCEee
Q 020928          126 VHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITD-V--DVQRLSIARNLGADETA  186 (319)
Q Consensus       126 ~~~l~~~~~~~~~~vlI~G~g~vG~~ai~la~~~g~~~vv~v~-~--~~~~~~~~~~~g~~~v~  186 (319)
                      ++.+..+.-+..+++++..+|+.|.++..+|+..|.+.++.+. .  +.++...++.+|+..+.
T Consensus        66 ~~~i~~a~~~g~~~iv~~SsGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~  129 (351)
T d1v7ca_          66 TLAVSKAVEGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQ  129 (351)
T ss_dssp             HHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHhcCCCeeeeeccccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhhcCCCceEe
Confidence            4444333233455666566899999999999999986444443 2  33555667888986543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.67  E-value=0.66  Score=37.36  Aligned_cols=31  Identities=35%  Similarity=0.657  Sum_probs=25.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      -|+|+|+|..|+.+...|...|+ +|++++..
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKA   51 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            37889999999999888888898 57777643

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=81.62  E-value=3.1  Score=31.70  Aligned_cols=93  Identities=10%  Similarity=0.093  Sum_probs=53.6

Q ss_pred             CeEEEECCCH----HHHHHHHHHHHc--CCCeEEEecCChhHH-HHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCc
Q 020928          138 TNVMIMGSGP----IGLVTLLAARAF--GAPRIIITDVDVQRL-SIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGI  210 (319)
Q Consensus       138 ~~vlI~G~g~----vG~~ai~la~~~--g~~~vv~v~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~  210 (319)
                      =+|.|+|+|.    ++..-+...+..  +++.+.+.+++.++. ++.++++......|+    +    +.++.+  ...+
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~----~----~~~l~~--~~~i   86 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFD----S----LESFAQ--YKDI   86 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEES----C----HHHHHH--CTTC
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeec----c----hhhccc--cccc
Confidence            4688899765    333333333333  453344556666654 456667754433232    2    222332  4579


Q ss_pred             cEEEEccCChHHHHHHHHhhcCC-----CEEEEec
Q 020928          211 DVSFDCVGFDKTMSTALNATRPG-----GKVCLIG  240 (319)
Q Consensus       211 d~v~d~~g~~~~~~~~~~~l~~~-----G~~v~~g  240 (319)
                      |+|+.++......+....+|..+     +.-+.+.
T Consensus        87 D~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~E  121 (237)
T d2nvwa1          87 DMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVE  121 (237)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEE
T ss_pred             ceeeccCCCcchhhHHHHHHHhcccccCCceEEEe
Confidence            99999998776677777777644     4456665

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.46  E-value=2.7  Score=28.32  Aligned_cols=83  Identities=19%  Similarity=0.167  Sum_probs=46.5

Q ss_pred             CCCeEEEECCCHH-----------HHHHHHHHHHcCCCeEEEecCChhHHHHHHHcC-CCEeeccCCCCcchhHHHHHhh
Q 020928          136 PETNVMIMGSGPI-----------GLVTLLAARAFGAPRIIITDVDVQRLSIARNLG-ADETAKVSTDIEDVDTDVGKIQ  203 (319)
Q Consensus       136 ~~~~vlI~G~g~v-----------G~~ai~la~~~g~~~vv~v~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~i~~~~  203 (319)
                      ..++|||+|+|+.           +.-++.-+|..|+ .++.+.++++....  .+. ++.+.. ..-.   .+.+.++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVst--d~d~aD~lYf-eplt---~e~v~~Ii   75 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVST--DYDTSDRLYF-EPVT---LEDVLEIV   75 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSSTT--STTSSSEEEC-CCCS---HHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhhc--ChhhcCceEE-ccCC---HHHHHHHH
Confidence            4578999998743           3455666777898 78888888765432  112 333322 1111   22233322


Q ss_pred             hhcCCCccEEEEccCChHHHHHHH
Q 020928          204 NAMGSGIDVSFDCVGFDKTMSTAL  227 (319)
Q Consensus       204 ~~~~~~~d~v~d~~g~~~~~~~~~  227 (319)
                      +  ..+.|.|+-.+|++-.++.+.
T Consensus        76 ~--~E~p~~ii~~~GGQtalnla~   97 (121)
T d1a9xa4          76 R--IEKPKGVIVQYGGQTPLKLAR   97 (121)
T ss_dssp             H--HHCCSEEECSSSTHHHHTTHH
T ss_pred             H--HhCCCEEEeehhhhhHHHHHH
Confidence            2  125788888888874443333

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=81.41  E-value=3.9  Score=28.45  Aligned_cols=31  Identities=16%  Similarity=0.384  Sum_probs=24.3

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCC-eEEEecC
Q 020928          139 NVMIMG-SGPIGLVTLLAARAFGAP-RIIITDV  169 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~g~~-~vv~v~~  169 (319)
                      +|.|+| +|.+|..+...+...+.. .++-.+.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            688999 699999998888887754 4666663

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.81  E-value=0.87  Score=35.38  Aligned_cols=30  Identities=17%  Similarity=0.431  Sum_probs=25.8

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          140 VMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       140 vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      ++|+|+|+.|+.+...|..+|. +|..++..
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNA-KVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            6788999999999999999999 68888753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=80.64  E-value=1.3  Score=29.56  Aligned_cols=34  Identities=15%  Similarity=0.226  Sum_probs=24.8

Q ss_pred             CCCeEEEECCCHHHHHHHHHHHHc---CCCeEEEecCC
Q 020928          136 PETNVMIMGSGPIGLVTLLAARAF---GAPRIIITDVD  170 (319)
Q Consensus       136 ~~~~vlI~G~g~vG~~ai~la~~~---g~~~vv~v~~~  170 (319)
                      .+++++|+|+|.+|.-+++++..+   |. .|..+.++
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~   53 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRG   53 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESS
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhccccc-ccceeccc
Confidence            458999999999998877765544   65 56666554

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=80.51  E-value=1.7  Score=31.82  Aligned_cols=94  Identities=16%  Similarity=0.156  Sum_probs=50.2

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHc-CCCeEEEecCChhHHHHHHHcCCCEeeccCCCCcchhHHHHHhhhhcCCCccEEEEc
Q 020928          139 NVMIMG-SGPIGLVTLLAARAF-GAPRIIITDVDVQRLSIARNLGADETAKVSTDIEDVDTDVGKIQNAMGSGIDVSFDC  216 (319)
Q Consensus       139 ~vlI~G-~g~vG~~ai~la~~~-g~~~vv~v~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~~~~~~~d~v~d~  216 (319)
                      +|.|.| +|-+|+-.++++... .+ .+..+.++...-..+.+.....  .. .........    .+..-.+.|++|-+
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~--~~-~~~~~~~~~----~~~~~~~~Dvvf~a   78 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHL--IT-QDLPNLVAV----KDADFSNVDAVFCC   78 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGG--TT-SCCCCCBCG----GGCCGGGCSEEEEC
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccc--cc-cccccchhh----hhhhhcccceeeec
Confidence            678899 599999999988865 34 3444433222111111111000  00 000000000    00112468999999


Q ss_pred             cCChHHHHHHHHhhcCCCEEEEecc
Q 020928          217 VGFDKTMSTALNATRPGGKVCLIGL  241 (319)
Q Consensus       217 ~g~~~~~~~~~~~l~~~G~~v~~g~  241 (319)
                      .+.. ........+...+..+....
T Consensus        79 lp~~-~s~~~~~~l~~~~~~v~~~~  102 (183)
T d2cvoa1          79 LPHG-TTQEIIKGLPQELKIVDLSA  102 (183)
T ss_dssp             CSSS-HHHHHHHTSCSSCEEEECSS
T ss_pred             cccc-hHHHHHHHHHhcCcccccch
Confidence            9987 55566677888888776653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=80.19  E-value=0.79  Score=36.88  Aligned_cols=31  Identities=39%  Similarity=0.733  Sum_probs=26.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Q 020928          139 NVMIMGSGPIGLVTLLAARAFGAPRIIITDVD  170 (319)
Q Consensus       139 ~vlI~G~g~vG~~ai~la~~~g~~~vv~v~~~  170 (319)
                      =|+|+|+|..|+.+...|...|+ +|++++..
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~-~V~llEk~   55 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGA-KVILLEKE   55 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            38999999999999888888898 57778654