Citrus Sinensis ID: 020960
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 319 | ||||||
| 224127961 | 314 | predicted protein [Populus trichocarpa] | 0.978 | 0.993 | 0.725 | 1e-116 | |
| 255559763 | 378 | conserved hypothetical protein [Ricinus | 0.956 | 0.806 | 0.685 | 1e-104 | |
| 225448345 | 323 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.978 | 0.677 | 1e-99 | |
| 356551815 | 313 | PREDICTED: uncharacterized protein LOC10 | 0.946 | 0.964 | 0.573 | 3e-82 | |
| 356498898 | 324 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.950 | 0.564 | 2e-77 | |
| 255636487 | 265 | unknown [Glycine max] | 0.721 | 0.867 | 0.534 | 2e-61 | |
| 297827719 | 838 | proline-rich family protein [Arabidopsis | 0.931 | 0.354 | 0.479 | 4e-58 | |
| 238479515 | 367 | Calcium-dependent lipid-binding (CaLB do | 0.510 | 0.444 | 0.621 | 1e-52 | |
| 357490503 | 386 | hypothetical protein MTR_5g069320 [Medic | 0.467 | 0.386 | 0.662 | 4e-52 | |
| 357490367 | 199 | hypothetical protein MTR_5g068530 [Medic | 0.473 | 0.758 | 0.647 | 9e-52 |
| >gi|224127961|ref|XP_002329220.1| predicted protein [Populus trichocarpa] gi|222871001|gb|EEF08132.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 233/321 (72%), Positives = 264/321 (82%), Gaps = 9/321 (2%)
Query: 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAV 60
MGKIWVEVCLISARGLRR+SSLWKLQWFAVGWIDP NKYCTKIDASG NP W+TKFA +
Sbjct: 1 MGKIWVEVCLISARGLRRTSSLWKLQWFAVGWIDPKNKYCTKIDASGNANPTWKTKFATL 60
Query: 61 VDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQ 120
+DDS+FQD ALHVEVYSREPIFLRERL GTAT+ LKEFLAKYS ++E SR G EEVGSYQ
Sbjct: 61 LDDSDFQDMALHVEVYSREPIFLRERLEGTATVVLKEFLAKYSNSNEASRPGTEEVGSYQ 120
Query: 121 LRKKNSNKPQGFIDVSVCISEEREEPSSYPGNEGGIMLADHSNNFMLPTEGAPGQNYPTQ 180
LRK+NS+KPQG +DVS+ ISEERE+PSSYPGNEGGIML DH+N LPTEG+ G+ +P++
Sbjct: 121 LRKRNSSKPQGLVDVSIHISEEREQPSSYPGNEGGIMLMDHNNKITLPTEGS-GKAFPSE 179
Query: 181 RPLALLHRPDNQLQSNYPYNNSIPYSTNYSNLSHGGPSYAPAAGPSYRPPRTPPPPPPPV 240
PL L +P+N S+ YN+ +PY NYSN S GGPSY PAAGPSY+P RTPPPPPPP
Sbjct: 180 LPLGSLRQPENH-PSSVAYNHPLPYPANYSNPSVGGPSYPPAAGPSYQPSRTPPPPPPPS 238
Query: 241 NVGYIPTFMPRTGNLSEAYVNMPSSGPPA--RGMRPGFGMGVGAGALAAGAVIFGDDFMS 298
NVGY+PT +P T Y+NMPSS A RG RPG MGVGAGALAAGAVIFGDDFMS
Sbjct: 239 NVGYMPTILPNTD-----YINMPSSVAAAGPRGPRPGLAMGVGAGALAAGAVIFGDDFMS 293
Query: 299 GFDVPAGLHDASLTISTDPPL 319
GFD+ GLHD SLTI+T+PP
Sbjct: 294 GFDILTGLHDPSLTITTNPPF 314
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559763|ref|XP_002520901.1| conserved hypothetical protein [Ricinus communis] gi|223540032|gb|EEF41610.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 220/321 (68%), Positives = 253/321 (78%), Gaps = 16/321 (4%)
Query: 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAV 60
M KIWVEVCLISARGLRR+SSLWKLQWFAVGWIDPNNKYCTKID SG NP+W+TKFA +
Sbjct: 72 MAKIWVEVCLISARGLRRTSSLWKLQWFAVGWIDPNNKYCTKIDPSGNANPIWKTKFATL 131
Query: 61 VDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQ 120
VDDSNFQD ALHVEVYSREP+FLRE L GTAT+ALKEFLAK G EEVGSYQ
Sbjct: 132 VDDSNFQDMALHVEVYSREPLFLRESLQGTATVALKEFLAK--------TPGKEEVGSYQ 183
Query: 121 LRKKNSNKPQGFIDVSVCISEEREEPSSYPGNEGGIMLADHSNNFMLPTEGAPGQNYPTQ 180
LR+++S+KPQGF+D+S+ ISE++ +PSSY GNEG + L DH +N L +EG G+ +P++
Sbjct: 184 LRRRSSSKPQGFVDISIHISEDKGDPSSYTGNEGQLKLMDHHHNIALSSEGVSGKTFPSE 243
Query: 181 RPLALLHRPDNQLQSNYPYNNSIPYSTNYSNLSHGGPSYAP-AAGPSYRPPRTPPPPPPP 239
PLA RP+NQ SN+ Y + +PY TNYS+ S GPSY P AAGPSY PP TPPPPPPP
Sbjct: 244 LPLAPPRRPENQ-SSNFSYAHPMPYPTNYSSQSLVGPSYPPAAAGPSYNPPLTPPPPPPP 302
Query: 240 VNVGYIPTFMPRTGNLSEAYVNMPSS-GPPARGMRPGFGMGVGAGALAAGAVIFGDDFMS 298
NVGY+PTF+P + Y+NMPSS P RG RPG MGVGAGALAAGAVIFGDDFMS
Sbjct: 303 SNVGYVPTFLPNSD-----YINMPSSLAPSGRGARPGLAMGVGAGALAAGAVIFGDDFMS 357
Query: 299 GFDVPAGLHDASLTISTDPPL 319
GFD+PA L D SLTISTDPP
Sbjct: 358 GFDIPATLPDPSLTISTDPPF 378
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225448345|ref|XP_002266989.1| PREDICTED: uncharacterized protein LOC100248425 [Vitis vinifera] gi|297736648|emb|CBI25519.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 248/322 (77%), Gaps = 6/322 (1%)
Query: 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAV 60
MGKIW+EVCLISARGL+R SSLWKLQWFAVGW+DPNNKYCTKIDASG NPVW+TKF+ +
Sbjct: 1 MGKIWIEVCLISARGLQR-SSLWKLQWFAVGWVDPNNKYCTKIDASGNANPVWKTKFSTL 59
Query: 61 VDD--SNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGS 118
VDD S FQD AL+VEVYSREPIFLRE+L GTAT+ LKEFLAK+ KNSE S+ G ++VGS
Sbjct: 60 VDDSESKFQDLALYVEVYSREPIFLREKLQGTATVNLKEFLAKHIKNSEASKPGTQDVGS 119
Query: 119 YQLRKKNSNKPQGFIDVSVCISEEREEPSSYPGNEGGIMLADHSNNFMLPTEGAPGQNYP 178
+QLRK+ S+KP GF+D+S+ ISEEREEP SY G E G L DHS+ L A Q YP
Sbjct: 120 FQLRKRKSSKPHGFVDISIRISEEREEPDSYSGKEEGFELMDHSSGITLAPADASTQAYP 179
Query: 179 TQRPLALLHRPDNQLQSNYPYNNSIPYSTNYSNLSHGGPSYAPAAGPSY--RPPRTPPPP 236
QRPLA L +P N Q+N+PY++ +P+ TN SN + GGPSY A G SY PPPP
Sbjct: 180 PQRPLAPLGQPQNPPQTNFPYSHPMPFPTNNSNPALGGPSYPSAGGTSYPPPRSPPPPPP 239
Query: 237 PPPVNVGYIPTFMPRTGNLSEAYVNM-PSSGPPARGMRPGFGMGVGAGALAAGAVIFGDD 295
PPP NVGYIPTF+PRT +L YVNM PS PGFGMGVGAGALAAGAVIFGDD
Sbjct: 240 PPPSNVGYIPTFLPRTDHLPGTYVNMPPSGSGAGSSRGPGFGMGVGAGALAAGAVIFGDD 299
Query: 296 FMSGFDVPAGLHDASLTISTDP 317
FMSGFD P GL DASLTISTDP
Sbjct: 300 FMSGFDFPTGLQDASLTISTDP 321
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551815|ref|XP_003544269.1| PREDICTED: uncharacterized protein LOC100802456 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 187/326 (57%), Positives = 230/326 (70%), Gaps = 24/326 (7%)
Query: 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAV 60
M KIW+EVCLISARG+R S SLWK QW+AVGW+DP +KYCTK+D SG NP+WRTKFA
Sbjct: 1 MAKIWIEVCLISARGVRGSPSLWKRQWYAVGWVDPKSKYCTKVDTSGNTNPIWRTKFAVH 60
Query: 61 VDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQ 120
VDDS D ALHVEVYS +P+FL E+L G+AT+ L+EFLAK N+ EEVGSYQ
Sbjct: 61 VDDSE-PDLALHVEVYSIDPVFLTEKLHGSATVVLREFLAKEVHNNS------EEVGSYQ 113
Query: 121 LRKKNSNKPQGFIDVSVCISEEREEPSSYP-GNEGGIMLADHSNN--FMLPTEGAPGQNY 177
LRKK SNKP GF+DVS+ +SE++EEP+ +P G+ GGI+L D+ NN L T GQ Y
Sbjct: 114 LRKKKSNKPSGFVDVSIRVSEDKEEPNFHPQGDGGGIVLLDYGNNSTIHLTTGTGFGQPY 173
Query: 178 PTQRPLALLHRPDNQLQSNYPYNNSIPYSTNY-SNLSHGGPSYAPAAGPSYRPPRTPPPP 236
P Q+ A H P Q Q+N P+++ +P+ +Y +N GGPSYAP AGPSY+PPRT
Sbjct: 174 PQQKAQASFHGPQKQAQTNVPHSHPVPFPADYATNPYVGGPSYAP-AGPSYQPPRT--TT 230
Query: 237 PPPVNVGYIPTFMPRTGNLSEAYVNMPS-----SGPPARGMRPGFGMGVGAGALAAGAVI 291
P P NV Y P F P +G ++ +Y NMPS +GP RG PGF +G GAGALAAGAVI
Sbjct: 231 PSPSNVNYAPNFFPSSGGMAPSYFNMPSSSSSGAGPRPRG-PPGFAIGAGAGALAAGAVI 289
Query: 292 FGDDFMSGFDVPAGLHDASLTISTDP 317
FGD+ MSGFDV D +LTI+TDP
Sbjct: 290 FGDNIMSGFDV----GDPTLTIATDP 311
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498898|ref|XP_003518284.1| PREDICTED: uncharacterized protein LOC100788042 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 187/331 (56%), Positives = 235/331 (70%), Gaps = 23/331 (6%)
Query: 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAV 60
M KIW+EVCLISARG+R S SLWK QW+AVGW+DP +KYCTK+DASG NPVWRTKFA
Sbjct: 1 MAKIWIEVCLISARGVRGSPSLWKRQWYAVGWVDPKSKYCTKVDASGNANPVWRTKFALQ 60
Query: 61 VDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQ 120
VD+S D ALHVEVYSR+P+FL E+L G+AT+ L+EFL K N+ EEVGSYQ
Sbjct: 61 VDNSE-PDLALHVEVYSRDPVFLTEKLHGSATVVLREFLTKEVHNNS------EEVGSYQ 113
Query: 121 LRKKNSNKPQGFIDVSVCISEEREEPSSYPGNEGGIMLADHSNNFMLPTEGAP-GQNYPT 179
LRK SNKP GF+DVS+ +SE++EE + +P +GG ++ D+ N+ T GA GQ YP
Sbjct: 114 LRKNKSNKPSGFVDVSIRVSEDKEELNFHPQGDGGGIILDYGNSTTHLTTGAGFGQPYPQ 173
Query: 180 QRPLALLHRPDNQLQSNYPYNNSIPYSTNYSNLSH-GGPSYAPAAGPSYRPPRTPPPPPP 238
+R H P Q Q+N+PY++ +P+ +Y+ + GGPSYAP AGPSY+PPRT PPPP
Sbjct: 174 KRAHGSFHGPQKQAQTNFPYSHPVPFPADYATDPYMGGPSYAP-AGPSYQPPRTITPPPP 232
Query: 239 PV----NVGYIPTFMPRTGNLSEAYVNMPS-------SGPPARGMRPGFGMGVGAGALAA 287
P NV Y P F P +G ++ +Y NMPS +GP RG PGF +G GAGALAA
Sbjct: 233 PPPPPSNVNYAPNFFPSSGGMAPSYFNMPSSSSSSSGAGPRPRG-PPGFAIGAGAGALAA 291
Query: 288 GAVIFGDDFMSGFDVPAGL-HDASLTISTDP 317
GAV+FGD+FMSGFDVP+G D +LTI+TDP
Sbjct: 292 GAVMFGDNFMSGFDVPSGFGGDPTLTIATDP 322
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255636487|gb|ACU18582.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/243 (53%), Positives = 167/243 (68%), Gaps = 13/243 (5%)
Query: 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAV 60
MG IWVEVCLISA GL+ S+SLWK QWFAVGWID N+KYCTK+ SG+ NPVWRTKF
Sbjct: 1 MGIIWVEVCLISAHGLQLSTSLWKRQWFAVGWIDHNSKYCTKVVDSGRANPVWRTKFVIP 60
Query: 61 VDDS--NFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGS 118
VDDS N QD AL+VEVYS +P+F E+L G+AT+ L+EFL KNSEGS+ EE+GS
Sbjct: 61 VDDSASNIQDLALNVEVYSIDPVFFTEKLHGSATVFLREFLVMKVKNSEGSKPRQEEIGS 120
Query: 119 YQLRKKNSNKPQGFIDVSVCISEEREEPSSYPGNEGGIMLADHSNNFMLPTEGAPGQNYP 178
YQLRKK S+KP+G ID+ + IS++++EP+S GN+ GI+L D + L E Q YP
Sbjct: 121 YQLRKKKSSKPRGCIDILIRISDKKKEPNSQSGNKEGILLLDDGDGTRLTIEEGIRQAYP 180
Query: 179 TQRPLALLHRPD-NQLQSNYPYNNSIP-YSTNYSNLSHG--------GPSYAPAAGPSYR 228
Q+P +H+P+ + +Q+N P +S+P +TNY + G PSY AGPSY
Sbjct: 181 -QKPQVSIHQPEKDHVQTNVPDYHSLPSTTTNYYDPYEGETSYHEVDEPSYREVAGPSYL 239
Query: 229 PPR 231
PR
Sbjct: 240 LPR 242
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827719|ref|XP_002881742.1| proline-rich family protein [Arabidopsis lyrata subsp. lyrata] gi|297327581|gb|EFH58001.1| proline-rich family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 208/334 (62%), Gaps = 37/334 (11%)
Query: 1 MGKIWVEVCLISARGLRRS----SSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTK 56
MGKI VE+CLISARGLR SSL K QW+AVGW+DP +KYCT IDAS +NPVWRTK
Sbjct: 527 MGKILVEICLISARGLRVGIGIGSSLLKHQWYAVGWLDPEDKYCTTIDASRSDNPVWRTK 586
Query: 57 FAAVVDDSNFQDA--ALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIE 114
FA ++DDS+ QD AL VEVYSREP+FLR+RL G+AT++LKEFL KY + S+ IE
Sbjct: 587 FATLLDDSSIQDTKLALQVEVYSREPLFLRKRLHGSATVSLKEFLTKYKQQQSSSKPVIE 646
Query: 115 EVGSYQLRKKNSNKPQGFIDVSVCISEEREEPSSYPGNEGGIMLADHSNNFMLPTEGAPG 174
E GSYQLRK NS+KPQGF+DVS+ IS ERE+ + G+ GG+ML+++S+ G
Sbjct: 647 ETGSYQLRKTNSSKPQGFVDVSIRISAEREDFGGFTGDFGGVMLSNNSDY------NTSG 700
Query: 175 QNY---PTQRPLALLHRPDNQLQSNYPYNNSIPYSTNYSNLSHGGPSYAPAAGPSYRPPR 231
Q+Y +Q P A L QSN P+ S+P S N+ + P
Sbjct: 701 QDYMAGSSQYPFASLD------QSN-PF--SVPPSYNHHSSMPNPPMNNTNPQMQQPYYP 751
Query: 232 TPPPPPPPVNVGYIPTFMPRTGNLSEAYVNMPSSGPPARGM------RPGFGMGVGAGAL 285
P PPPP++ GY+PT++P++ N++ N+PSS G RPG G G GA
Sbjct: 752 PPMQPPPPMSSGYMPTYIPKSENVT----NIPSSSGGVPGGAGRGYARPGPGFAAGLGAG 807
Query: 286 AAGAVIFGDDFMSGFDVPAGLHDASLTISTDPPL 319
AA G ++MSG D+P+ L S++IS DPP
Sbjct: 808 AALY---GGEYMSGIDLPSSLPHPSVSISIDPPF 838
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|238479515|ref|NP_001154566.1| Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana] gi|330254790|gb|AEC09884.1| Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/169 (62%), Positives = 133/169 (78%), Gaps = 6/169 (3%)
Query: 1 MGKIWVEVCLISARGLRRS----SSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTK 56
MGKI VE+C+ISARGLR SSL K QW+AVGW+DP +KYCT IDAS +NPVWRTK
Sbjct: 1 MGKILVEICMISARGLRVGIGIGSSLLKHQWYAVGWLDPEDKYCTTIDASRADNPVWRTK 60
Query: 57 FAAVVDDSNFQDA--ALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIE 114
FA ++DDS QD+ AL VEVYSREP+FLR+RL G+AT++LKEFL KY + S++ IE
Sbjct: 61 FATLLDDSTIQDSKLALQVEVYSREPLFLRKRLHGSATVSLKEFLTKYKQQQSSSKAVIE 120
Query: 115 EVGSYQLRKKNSNKPQGFIDVSVCISEEREEPSSYPGNEGGIMLADHSN 163
E GSYQLRK NS+KPQGF+DVS+ IS ERE+ + G+ GG+ML+++S+
Sbjct: 121 ETGSYQLRKTNSSKPQGFVDVSIRISAEREDFGGFTGDFGGVMLSNNSD 169
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357490503|ref|XP_003615539.1| hypothetical protein MTR_5g069320 [Medicago truncatula] gi|355516874|gb|AES98497.1| hypothetical protein MTR_5g069320 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/151 (66%), Positives = 120/151 (79%), Gaps = 2/151 (1%)
Query: 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAV 60
M KIWVE+CLISARG+R S SLWK QW+A+GW+DP NKY TK+DAS NP+WRTKF+
Sbjct: 1 MVKIWVEICLISARGVRASHSLWKRQWYAIGWVDPTNKYITKVDASTNTNPLWRTKFSIQ 60
Query: 61 VDDS--NFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGS 118
VD+S NF D AL+VEVYSR+P F E+L G+AT+ LKEFLAK N EG R G EEVGS
Sbjct: 61 VDNSDPNFHDLALNVEVYSRDPFFFTEKLHGSATVLLKEFLAKGLLNDEGLRQGSEEVGS 120
Query: 119 YQLRKKNSNKPQGFIDVSVCISEEREEPSSY 149
YQLRKK S KP GF+DVSV +SE++EEP+S+
Sbjct: 121 YQLRKKKSGKPSGFVDVSVRVSEDKEEPNSH 151
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357490367|ref|XP_003615471.1| hypothetical protein MTR_5g068530 [Medicago truncatula] gi|355516806|gb|AES98429.1| hypothetical protein MTR_5g068530 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 99/153 (64%), Positives = 119/153 (77%), Gaps = 2/153 (1%)
Query: 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAV 60
M KIWVE+C+ISARG+R S SLWK QW+A+GW+DP NKY TK+DAS NP+WRTKF+
Sbjct: 40 MVKIWVEICIISARGVRASHSLWKRQWYAIGWVDPTNKYITKVDASTNTNPLWRTKFSIQ 99
Query: 61 VDDS--NFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGS 118
VD+S NF D AL+VEVYSR+P F E+L G+AT+ LKEFLAK N EG R G EEVGS
Sbjct: 100 VDNSDPNFHDLALNVEVYSRDPFFFTEKLHGSATVLLKEFLAKGLLNDEGLRQGSEEVGS 159
Query: 119 YQLRKKNSNKPQGFIDVSVCISEEREEPSSYPG 151
YQLRKK S KP GF+DVSV +SE+ EEP+S+
Sbjct: 160 YQLRKKKSGKPSGFVDVSVRVSEDNEEPNSHSA 192
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 319 | ||||||
| TAIR|locus:5019474737 | 367 | AT2G40815 "AT2G40815" [Arabido | 0.752 | 0.653 | 0.490 | 4.2e-63 | |
| TAIR|locus:2124933 | 250 | AT4G01200 "AT4G01200" [Arabido | 0.420 | 0.536 | 0.278 | 1.5e-10 | |
| TAIR|locus:2102980 | 391 | AT3G04360 "AT3G04360" [Arabido | 0.432 | 0.352 | 0.300 | 4.8e-09 | |
| TAIR|locus:2172828 | 219 | AT5G23950 "AT5G23950" [Arabido | 0.407 | 0.593 | 0.267 | 1.2e-05 | |
| TAIR|locus:2050782 | 207 | BAP2 "AT2G45760" [Arabidopsis | 0.463 | 0.714 | 0.246 | 1.7e-05 | |
| TAIR|locus:2197868 | 601 | AT1G04540 "AT1G04540" [Arabido | 0.394 | 0.209 | 0.272 | 0.00013 | |
| TAIR|locus:2041654 | 401 | AT2G13350 "AT2G13350" [Arabido | 0.369 | 0.294 | 0.268 | 0.00027 | |
| TAIR|locus:2088334 | 360 | AT3G16510 "AT3G16510" [Arabido | 0.661 | 0.586 | 0.241 | 0.00082 |
| TAIR|locus:5019474737 AT2G40815 "AT2G40815" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 129/263 (49%), Positives = 170/263 (64%)
Query: 1 MGKIWVEVCLISARGLRRS----SSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTK 56
MGKI VE+C+ISARGLR SSL K QW+AVGW+DP +KYCT IDAS +NPVWRTK
Sbjct: 1 MGKILVEICMISARGLRVGIGIGSSLLKHQWYAVGWLDPEDKYCTTIDASRADNPVWRTK 60
Query: 57 FAAVVDDSNFQDA--ALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIE 114
FA ++DDS QD+ AL VEVYSREP+FLR+RL G+AT++LKEFL KY + S++ IE
Sbjct: 61 FATLLDDSTIQDSKLALQVEVYSREPLFLRKRLHGSATVSLKEFLTKYKQQQSSSKAVIE 120
Query: 115 EVGSYQLRKKNSNKPQGFIDVSVCISEEREEPSSYPGNEGGIMLADHSNNFMLPTEGAPG 174
E GSYQLRK NS+KPQGF+DVS+ IS ERE+ + G+ GG+ML SNN T G
Sbjct: 121 ETGSYQLRKTNSSKPQGFVDVSIRISAEREDFGGFTGDFGGVML---SNNSDYNTSGQDY 177
Query: 175 QNYPTQRPLALLHRPDN-QLQSNYPYNNSIPYS--TNYSNLSHGGPSYAPAAGPSYXXXX 231
+Q P A + + + + +Y +++S+P TN +N P Y P P
Sbjct: 178 MAGSSQYPFAPMDQSNPFSVPPSYNHHSSMPNPPMTN-TNPQMQQPYYPPPMQPP----- 231
Query: 232 XXXXXXXXVNVGYIPTFMPRTGN 254
+N GY+PT++P++ N
Sbjct: 232 -----PPPMNSGYMPTYIPKSVN 249
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| TAIR|locus:2124933 AT4G01200 "AT4G01200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 164 (62.8 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 41/147 (27%), Positives = 78/147 (53%)
Query: 6 VEVCLISARGLRR-SSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDS 64
+E+ LISA+GL+ + L +LQ +A W+D ++K T+ID G ENP+W KF V
Sbjct: 7 LEINLISAQGLKEPTGKLRRLQTYASVWVDSSSKLRTRIDRIGSENPIWNDKFVFQVSPE 66
Query: 65 --NFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLR 122
+ + + + +E+Y+ +LR+ L+GT + FL + + + + Q+R
Sbjct: 67 FLSSETSGVSIEIYAVG--YLRDHLIGTVRFLVSNFLPTAAVK-------VPSLVALQIR 117
Query: 123 KKNSNKPQGFIDVSVCISEEREEPSSY 149
+ S K G ++++ + + E P+ +
Sbjct: 118 RP-SGKFHGVLNIAAMVMDASELPADF 143
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| TAIR|locus:2102980 AT3G04360 "AT3G04360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 46/153 (30%), Positives = 82/153 (53%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWI--DPNNKYCTKIDASGKENPVWRTKFAAVVDD 63
+E+ LISA+ L S ++ ++V WI DP K T++D S + NP+W KF V+D
Sbjct: 11 LEINLISAQDLAPVSR--NMKTYSVAWINTDPMRKLTTRVDQSNRANPIWNEKFVFRVND 68
Query: 64 SN-FQDA-ALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSG----IEEVG 117
+ DA A+ +E+Y+ + ++ L+GT + L + A +S +G+ G +
Sbjct: 69 KILYVDASAIVIEIYAAA--WAKDALVGTVNVLLSDLFAPWSGFGDGNDGGGGNNNMRLV 126
Query: 118 SYQLRKKNSNKPQGFIDVSVCISE--EREEPSS 148
+ Q+R+ S + QGF+ + V + + +R P S
Sbjct: 127 TLQIRRP-SGRLQGFLRLGVALLDGGQRSMPLS 158
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| TAIR|locus:2172828 AT5G23950 "AT5G23950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 39/146 (26%), Positives = 73/146 (50%)
Query: 6 VEVCLISARGLRRSSSLWKL---QWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVD 62
VEV + SA+ ++ + W+ + +AV WIDP K T++D G W F +
Sbjct: 8 VEVTISSAKDIKNVN--WRNGPNKPYAVVWIDPKFKSSTRVDEDGNTCTTWNETFVIALP 65
Query: 63 DSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLR 122
+N D +++ + + L+G+A ++L++ + + G G+ + + +L
Sbjct: 66 PANDDDDKVYINIVHAGREENTKPLIGSAHLSLRDVI-----DDVGF--GVPFMKTLKL- 117
Query: 123 KKNSNKPQGFIDVSVCISEEREEPSS 148
K+ S +PQG +DV+V + RE P S
Sbjct: 118 KRPSGRPQGKLDVTVTV---RETPGS 140
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| TAIR|locus:2050782 BAP2 "AT2G45760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 121 (47.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 39/158 (24%), Positives = 80/158 (50%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN 65
+E+ +ISA GL+ K + ++V ID + + +K+D G P+W+ +F + N
Sbjct: 10 LEIEVISAEGLKVDRKPLKKKTYSVVRIDEKS-WASKVDELGGSYPIWKDRFDMEMP-IN 67
Query: 66 FQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN 125
+ +EVY R R++ +G A I + +F+ ++ +G + + SY+LR +
Sbjct: 68 ASVRFISIEVYYRTSGSGRDKNVGYAKIPVTDFMGGFAP--QGHLNFL----SYRLRDEY 121
Query: 126 SNKPQGFIDVSVCISEE-REEPSSYPGNEGGIMLADHS 162
+K G ++VS+ + + + SS P + + D++
Sbjct: 122 GDKC-GIVNVSIMVKPDGNDHKSSLPSSSFAVAPVDYA 158
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| TAIR|locus:2197868 AT1G04540 "AT1G04540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 39/143 (27%), Positives = 75/143 (52%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN 65
+E+ +ISA+ L + K + +AV W+ K T++D +G NP W KF V++
Sbjct: 11 LELNIISAQDLAPVAR--KTKTYAVAWVHSERKLTTRVDYNGGTNPTWNDKFVFRVNEEF 68
Query: 66 -FQD-AALHVEVYSREPIFLRERLLGTATIALKEFLAK-----Y-SKNSEGSRS---GIE 114
+ D +A+ +E+Y+ + R+ +GT + + + Y + N+E R+ G+
Sbjct: 69 LYADTSAVVIEIYALH--WFRDVHVGTVRVLISNLIPPNRRPGYRTSNNEYRRTPPPGMR 126
Query: 115 EVGSYQLRKKNSNKPQGFIDVSV 137
V + Q+R+ S +PQG +++ V
Sbjct: 127 FV-ALQVRR-TSGRPQGILNIGV 147
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| TAIR|locus:2041654 AT2G13350 "AT2G13350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 0.00027, P = 0.00027
Identities = 36/134 (26%), Positives = 66/134 (49%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN 65
+E+ +ISA+ L + K +A+ WIDP K T++D +G +P W KF +D+
Sbjct: 10 LELNIISAQELAPVARCMKT--YAIAWIDPERKLTTRVDNTGGTSPTWNDKFVFRLDEEA 67
Query: 66 FQDAA--LHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123
DA + +E+Y+ + ++ +GT + + ++ S R EV LR
Sbjct: 68 LYDATSIVVIEIYALH--WFKDIHVGTVQALISDLVSP----SSAMRFVTLEV----LRA 117
Query: 124 KNSNKPQGFIDVSV 137
S +P G ++++V
Sbjct: 118 --SGRPHGLLNIAV 129
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| TAIR|locus:2088334 AT3G16510 "AT3G16510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 112 (44.5 bits), Expect = 0.00082, P = 0.00082
Identities = 57/236 (24%), Positives = 98/236 (41%)
Query: 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWID-----PNNKYCTKIDASGKENPVWRT 55
M + +E+ + SA+ L + + K+ +AV WI N+K T ID +G+ P W
Sbjct: 1 MANLTLELNVYSAKDLENVNLITKMDVYAVVWITGDDSRKNHKEKTPIDRTGESEPTWNH 60
Query: 56 KFAAVVDDSNFQDAALHVEV-YSREPIFLRERLLGTATIALKEFL-AKYSKNSEGSRSGI 113
VD + L + V + IF ++ LG + + E L S +S G G+
Sbjct: 61 TVKFSVDQRLAHEGRLTLVVKLVCDRIF-GDKDLGEVQVPVLELLHGSSSPSSNGDGQGM 119
Query: 114 EEVGSYQLRKKNSNKPQGFIDVSVCISEEREEP----SSYPGNEGGIMLADH--SNNFML 167
+YQ+R K QG + S +P SS+ ++ + + H +N +
Sbjct: 120 MRFVTYQVRTP-FGKGQGSLTFSYRFDSPTFKPDQPVSSHVFHQDPPVSSSHVYTNPMDI 178
Query: 168 PTE-GAPGQNYPTQR--------PLALLHRPDNQLQSNYPYNNSIPYSTNYSNLSH 214
P++ + NYP + PL+ + P + +Y + PY Y SH
Sbjct: 179 PSDFSSATTNYPPPQSSEANFYPPLSSIGYPPSSPPQHYS-SPPYPYPNPYQYHSH 233
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 319 283 0.00084 115 3 11 23 0.43 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 609 (65 KB)
Total size of DFA: 222 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.50u 0.12s 24.62t Elapsed: 00:00:02
Total cpu time: 24.50u 0.12s 24.62t Elapsed: 00:00:02
Start: Fri May 10 18:09:08 2013 End: Fri May 10 18:09:10 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.01250040 | hypothetical protein (314 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 319 | |||
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 2e-33 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-10 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 8e-05 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 1e-04 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-33
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN 65
+E+ +ISA L+ + K++ +AV WIDP++K T +D G NP W +D+
Sbjct: 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61
Query: 66 FQD--AALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123
Q AL +EVY P L ++L+G + LK+ L S E SYQLR+
Sbjct: 62 LQQGRLALTIEVYCERP-SLGDKLIGEVRVPLKDLLDGASPAGE------LRFLSYQLRR 114
Query: 124 KNSNKPQGFIDV 135
S KPQG ++
Sbjct: 115 P-SGKPQGVLNF 125
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SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-10
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAVVDD 63
+ V +ISAR L K + +D K TK+ NPVW F +
Sbjct: 2 LTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKV-VKNTLNPVWNETF--EFEV 58
Query: 64 SNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSK 104
+ A L +EVY ++ F R+ +G TI L + L
Sbjct: 59 PPPELAELEIEVYDKDR-FGRDDFIGQVTIPLSDLLLGGRH 98
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Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-05
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 50 NPVWRTKF----AAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKE 97
NPVW F A D L + V E + R RL+G+AT++L++
Sbjct: 38 NPVWNETFEWPLAGSPDPDES----LEIVVKDYEKVG-RNRLIGSATVSLQD 84
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Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAVVDD 63
+ V +ISA+ L K + + + TK+ NPVW F V
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKV-VKNTLNPVWNETFTFEVTL 59
Query: 64 SNFQDAALHVEVYSREPIFLRERLLGTAT 92
+ L +EVY + F ++ +G T
Sbjct: 60 PELAE--LRIEVYDYDR-FGKDDFIGEVT 85
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Length = 85 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 319 | |||
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.92 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.89 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.89 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.88 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.87 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.86 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.86 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.86 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.86 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.85 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.84 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.84 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.84 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.84 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.84 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.83 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.83 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.83 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.83 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.83 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.83 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.83 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.82 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.82 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.82 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.82 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.81 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.81 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.81 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.8 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.8 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.8 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.79 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.79 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.79 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.78 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.78 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.78 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.78 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.78 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.78 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.78 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.77 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.77 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.77 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.77 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.77 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.77 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.77 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.76 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.76 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.76 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.76 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.75 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.75 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.75 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.75 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.75 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.74 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.74 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.74 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.74 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.74 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.72 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.72 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.71 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.71 | |
| PLN03008 | 868 | Phospholipase D delta | 99.71 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.71 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.71 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.7 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.7 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.69 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.69 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.69 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.69 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.69 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.68 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.68 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.68 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.67 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.67 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.67 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.67 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.67 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.67 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.67 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.65 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.65 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.64 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.64 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.63 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.6 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.59 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.59 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.56 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.55 | |
| PLN02270 | 808 | phospholipase D alpha | 99.48 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.48 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.47 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.43 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.43 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.35 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.31 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 99.29 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 99.28 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 99.26 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.26 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 99.24 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 99.22 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.21 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.17 | |
| PLN02352 | 758 | phospholipase D epsilon | 99.1 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.88 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.87 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.61 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.46 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.35 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.28 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.16 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 98.14 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.11 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.98 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 97.87 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 97.85 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.75 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 97.7 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.69 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 97.53 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 97.49 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 97.33 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 97.32 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.95 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 96.9 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.75 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 96.6 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 96.59 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.59 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 96.48 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 96.44 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 96.42 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 96.26 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 96.07 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 95.44 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.93 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 94.92 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 93.47 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 93.3 | |
| cd08679 | 178 | C2_DOCK180_related C2 domains found in Dedicator O | 92.76 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 91.21 | |
| PTZ00447 | 508 | apical membrane antigen 1-like protein; Provisiona | 91.05 | |
| cd08697 | 185 | C2_Dock-D C2 domains found in Dedicator Of CytoKin | 88.58 | |
| cd08696 | 179 | C2_Dock-C C2 domains found in Dedicator Of CytoKin | 88.16 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 87.73 | |
| KOG4269 | 1112 | consensus Rac GTPase-activating protein BCR/ABR [S | 84.52 | |
| KOG3543 | 1218 | consensus Ca2+-dependent activator protein [Signal | 84.24 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 80.87 |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=181.26 Aligned_cols=120 Identities=13% Similarity=0.279 Sum_probs=101.0
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
++.|+|+|++||+|++.+ ++++||||++.+. .++.||+|+++++.||+|||+|.|.|.+. ...|.|+|||++. +
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg-~~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~-~ 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG-HAVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERA-F 74 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC-CEEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCC-C
Confidence 578999999999999887 7999999999994 56789999987789999999999999764 3679999999997 7
Q ss_pred CCCceeEEEEEech-hhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEE
Q 020960 83 LRERLLGTATIALK-EFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCI 139 (319)
Q Consensus 83 ~kDklIG~a~IpL~-dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f 139 (319)
.+|++||++.|+|. .+..+... ..||.|..+...+..|+|+|+|+|
T Consensus 75 ~~dd~iG~~~i~l~~~~~~g~~~-----------~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 75 TMDERIAWTHITIPESVFNGETL-----------DDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred cCCceEEEEEEECchhccCCCCc-----------cccEeCcCccCCCCceEEEEEEeC
Confidence 89999999999996 46554322 348999764444678999999986
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-23 Score=169.12 Aligned_cols=123 Identities=36% Similarity=0.613 Sum_probs=105.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCC--CcceEEEEEEecCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNF--QDAALHVEVYSREPIF 82 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~l--q~~~L~VeV~d~~~~~ 82 (319)
+|+|+|++|++|+..+..+++||||+|++.+.++++|+++++++.||+|||+|.|.+....+ ....|.|+|||++. +
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-S 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-C
Confidence 48999999999999888889999999999765788999987778999999999999976521 24789999999987 5
Q ss_pred CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEE
Q 020960 83 LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDV 135 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~l 135 (319)
.+|++||++.|+|.++..+.... ......||+|++ ++||++|+|+|
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~------~~~~~~~~~l~~-~~g~~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPA------GELRFLSYQLRR-PSGKPQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCC------CcceeEEEEeEC-CCCCcCeEEeC
Confidence 78999999999999999876532 123567999997 78999999986
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=163.86 Aligned_cols=118 Identities=20% Similarity=0.266 Sum_probs=100.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
+.|+|+|++|++|+..+..+++||||++.+.+ .+++|+++++++.||+|||+|.|.+... ....|.|+|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~--~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDK--R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCC--C
Confidence 57999999999999988888999999999964 6778998766689999999999999764 14789999999885 3
Q ss_pred CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEE
Q 020960 84 RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCI 139 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f 139 (319)
+|++||++.++|+++..+... ..||.|.+ +++.+|+|+|.|+|
T Consensus 76 ~~~~iG~~~~~l~~~~~~~~~-----------~~w~~L~~--~~~~~G~i~l~l~f 118 (118)
T cd08681 76 KPDLIGDTEVDLSPALKEGEF-----------DDWYELTL--KGRYAGEVYLELTF 118 (118)
T ss_pred CCcceEEEEEecHHHhhcCCC-----------CCcEEecc--CCcEeeEEEEEEEC
Confidence 599999999999999875332 23888875 67899999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-22 Score=162.92 Aligned_cols=121 Identities=20% Similarity=0.288 Sum_probs=103.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLR 84 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~k 84 (319)
.|+|+|++|++|+..+..+..||||++.+.+...+||+++++ +.||+|||+|.|.+... ...|.|+|||++. +.+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~---~~~l~~~v~D~d~-~~~ 75 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDV---TQPLYIKVFDYDR-GLT 75 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecCC---CCeEEEEEEeCCC-CCC
Confidence 489999999999998888899999999997767889999875 89999999999999764 4789999999987 679
Q ss_pred CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEee
Q 020960 85 ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISE 141 (319)
Q Consensus 85 DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~ 141 (319)
|++||.+.++|.++..+... ..|+.|+.+++.+..|+|+|.++|.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~-----------~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 76 DDFMGSAFVDLSTLELNKPT-----------EVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CcceEEEEEEHHHcCCCCCe-----------EEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999999999975331 34889986344578999999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=158.44 Aligned_cols=121 Identities=23% Similarity=0.303 Sum_probs=101.3
Q ss_pred eEEEEEEEEecCCCCCCCC-CCCCcEEEEEECC-CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC
Q 020960 4 IWVEVCLISARGLRRSSSL-WKLQWFAVGWIDP-NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI 81 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~-gk~DPYV~v~ld~-~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~ 81 (319)
+.|+|+|++|++|+..+.. +..||||++++.+ ..+++|+++++ +.||+|||.|.|.+... ...|.|+|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~~---~~~l~~~v~d~~~- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNSL---TEPLNLTVYDFND- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCCC---CCEEEEEEEecCC-
Confidence 6899999999999976544 5689999999987 47889999875 89999999999999853 5789999999987
Q ss_pred CCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEee
Q 020960 82 FLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISE 141 (319)
Q Consensus 82 ~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~ 141 (319)
+.+|++||++.++|+++..+.... ..++.|. .++|.+|+|+|+|+|.|
T Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~----------~~~~~~~--~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 KRKDKLIGTAEFDLSSLLQNPEQE----------NLTKNLL--RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCceeEEEEEEHHHhccCcccc----------Ccchhhh--cCCccceEEEEEEEeCC
Confidence 679999999999999999865432 1244554 48889999999999975
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-21 Score=158.92 Aligned_cols=126 Identities=17% Similarity=0.252 Sum_probs=103.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCC------CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPN------NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~------~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.|+|+|++|++|+..+..+..||||++.+.+. .+++|+++++ +.||+|||+|.|.+... ...|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~---~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPR---EHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCC---CCEEEEEEEEC
Confidence 48999999999999888889999999999643 2568998875 99999999999999764 36799999999
Q ss_pred CCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEEEe
Q 020960 79 EPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVCIS 140 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~f~ 140 (319)
+. +.+|++||++.|+|+++........ ......||.|+++ ..++.+|+|+|+++|.
T Consensus 77 ~~-~~~~~~iG~~~i~l~~l~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 77 NR-LTRDDFLGQVEVPLNNLPTETPGNE-----RRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CC-CCCCCeeEEEEEEHHHCCCcCcccc-----ccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 87 6889999999999999997643211 1223468999863 3578899999999984
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-21 Score=160.31 Aligned_cols=121 Identities=22% Similarity=0.375 Sum_probs=97.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCC---CCCcceEEEEEEecCCCC
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDS---NFQDAALHVEVYSREPIF 82 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~---~lq~~~L~VeV~d~~~~~ 82 (319)
|+|+|++|++|+..+..+.+||||+|.+. ..++||+++++ +.||+|||+|.|.|... ......|.|+|||++. +
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-~~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-KEKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-L 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC-CeeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-c
Confidence 58999999999988877889999999995 56889999876 79999999999999762 1225789999999987 6
Q ss_pred CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCC--CCccceEEEEEEE
Q 020960 83 LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN--SNKPQGFIDVSVC 138 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~--sgKp~G~L~lsL~ 138 (319)
.+|++||++.|+|+++...... ....||.|..++ ..+.+|+|+|.|.
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~---------~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGR---------RRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCC---------cccEEEECcCCCCCCccccceEEEEeC
Confidence 7899999999999999843221 123589997422 2457899999873
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-21 Score=165.78 Aligned_cols=135 Identities=19% Similarity=0.274 Sum_probs=107.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLR 84 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~k 84 (319)
.|+|+|++|++|+..+..+++||||++.+.+ +++||+++++++.||+|||+|.|.+.+.. .+.|.|+||+++. ..+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~~--~~~l~v~V~d~~~-~~~ 76 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEPF--EDHLILSVEDRVG-PNK 76 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCcc--CCeEEEEEEEecC-CCC
Confidence 3899999999999998889999999999964 78899998765799999999999997642 3689999999886 578
Q ss_pred CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCC-------CCccceEEEEEEEEeec---CCCCCCCC
Q 020960 85 ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN-------SNKPQGFIDVSVCISEE---REEPSSYP 150 (319)
Q Consensus 85 DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~-------sgKp~G~L~lsL~f~~~---~~~~~~~~ 150 (319)
|++||++.|+|+++..+.... .....||.|.+.. ..|.+|+|+|.|+|.+. +...++|+
T Consensus 77 dd~lG~v~i~L~~l~~~~~~~-------~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~ 145 (150)
T cd04019 77 DEPLGRAVIPLNDIERRVDDR-------PVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYS 145 (150)
T ss_pred CCeEEEEEEEHHHCcccCCCC-------ccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccc
Confidence 999999999999997653211 1224589998632 23678999999999864 44444444
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=158.86 Aligned_cols=123 Identities=24% Similarity=0.310 Sum_probs=100.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCC-CCcceEEEEEEecCCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN-FQDAALHVEVYSREPIFL 83 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~-lq~~~L~VeV~d~~~~~~ 83 (319)
.|+|+|++|++|...+..+.+||||+|.+. .+++||+++++ +.||+|||+|.|.+.+.. +....|.|+|||++. +.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-~~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD-GQKKRTRTKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-SG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC-CEEecceeEcC-CCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-Cc
Confidence 489999999999988877889999999996 46789999874 899999999999997532 224689999999886 45
Q ss_pred -CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCC-CCccceEEEEEEEEe
Q 020960 84 -RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN-SNKPQGFIDVSVCIS 140 (319)
Q Consensus 84 -kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~-sgKp~G~L~lsL~f~ 140 (319)
+|++||++.|+|+++..... ....||.|.++. .++.+|+|+|.+.|.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~----------~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSE----------AVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCC----------ccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 89999999999999984221 124589998632 457899999999985
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=155.86 Aligned_cols=120 Identities=23% Similarity=0.301 Sum_probs=100.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC-CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCC
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDP-NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLR 84 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~-~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~k 84 (319)
|.|+|++|++|.. ..+..||||+++++. ..++||+++++ +.||+|||+|.|.+... ...|.|+|||++. +.+
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~-~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSPN---SKELLFEVYDNGK-KSD 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCCC---CCEEEEEEEECCC-CCC
Confidence 6799999999987 568899999999964 46789999875 89999999999999653 4779999999987 678
Q ss_pred CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC--CCCccceEEEEEEEEeecC
Q 020960 85 ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK--NSNKPQGFIDVSVCISEER 143 (319)
Q Consensus 85 DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~--~sgKp~G~L~lsL~f~~~~ 143 (319)
|++||++.|+|+++..+... ..|+.|..+ ++.+.+|+|++.++|.+..
T Consensus 74 ~~~lG~~~i~l~~l~~~~~~-----------~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 74 SKFLGLAIVPFDELRKNPSG-----------RQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CceEEEEEEeHHHhccCCce-----------eEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 99999999999999976532 237888753 2356899999999998764
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-20 Score=154.81 Aligned_cols=121 Identities=14% Similarity=0.156 Sum_probs=98.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
.+.|+|+|++|++|+.. +.+||||+|.+++.++.||++. . +.||+|||+|.|.+.... ...|+|+|||++. +
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~-~~nP~WnE~f~f~~~~~~--~~~l~v~v~d~~~-~ 74 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-E-GPNPVWSEEFVFDDLPPD--VNSFTISLSNKAK-R 74 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-C-CCCCccCCEEEEecCCCC--cCEEEEEEEECCC-C
Confidence 36899999999999864 3689999999976666799984 3 799999999999876542 2578999999987 6
Q ss_pred CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCC--CCccceEEEEEEEEeec
Q 020960 83 LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN--SNKPQGFIDVSVCISEE 142 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~--sgKp~G~L~lsL~f~~~ 142 (319)
.+|++||++.|+|.++..+... ..||.|.... ..+..|+|+|.|+|.+.
T Consensus 75 ~~d~~iG~v~i~l~~l~~~~~~-----------~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 75 SKDSEIAEVTVQLSKLQNGQET-----------DEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCCeEEEEEEEHhHccCCCcc-----------cEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 8999999999999998875321 3489998632 24567999999999875
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=157.91 Aligned_cols=114 Identities=22% Similarity=0.276 Sum_probs=95.0
Q ss_pred EEEEEEEEecC---CCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC
Q 020960 5 WVEVCLISARG---LRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI 81 (319)
Q Consensus 5 ~LeVtViSAr~---Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~ 81 (319)
.|+|+|++|++ |+..+..+.+||||++.+. .++.||+++++ ++||+|||+|.|.+.+. ...|.|+|||++.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g-~~~~rTk~~~~-~~nP~WnE~f~f~v~~~---~~~l~v~V~d~d~- 74 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG-PKWVRTRTVED-SSNPRWNEQYTWPVYDP---CTVLTVGVFDNSQ- 74 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC-CEEeEcCcccC-CCCCcceeEEEEEecCC---CCEEEEEEEECCC-
Confidence 48999999999 7888888999999999994 56889999975 89999999999999764 3689999999886
Q ss_pred C------CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC--CCCccceEEEE
Q 020960 82 F------LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK--NSNKPQGFIDV 135 (319)
Q Consensus 82 ~------~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~--~sgKp~G~L~l 135 (319)
+ .+|++||++.|+|.++..+... ..||.|+.. +..|..|+|++
T Consensus 75 ~~~~~~~~~dd~lG~~~i~l~~l~~~~~~-----------~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 75 SHWKEAVQPDVLIGKVRIRLSTLEDDRVY-----------AHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccccCCCCceEEEEEEEHHHccCCCEE-----------eeEEEeEeCCCCCccCCcEEEe
Confidence 3 3899999999999999876432 348999852 23567788875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=154.38 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=98.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCC
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRE 85 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kD 85 (319)
|+|+|++|++|... ..||||++.+. ..+.||+++++ +.||+|||+|.|.+... +...|.|+|||++. .+|
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~-~~~~kT~v~~~-t~nP~Wne~F~f~~~~~--~~~~L~~~v~d~d~--~~~ 71 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLG-NYKGSTKAIER-TSNPEWNQVFAFSKDRL--QGSTLEVSVWDKDK--AKD 71 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEEC-CccccccccCC-CCCCccceEEEEEcCCC--cCCEEEEEEEeCCC--CcC
Confidence 89999999999876 68999999995 46889999875 89999999999998652 25789999999985 389
Q ss_pred ceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEe
Q 020960 86 RLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCIS 140 (319)
Q Consensus 86 klIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~ 140 (319)
++||++.|+|+++....... ......||.|.++++++.+|+|+|+|+|.
T Consensus 72 ~~lG~~~i~l~~l~~~~~~~------~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 72 DFLGGVCFDLSEVPTRVPPD------SPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred ceeeeEEEEhHhCcCCCCCC------CCCCcceEEccCCCCCccceEEEEEEEec
Confidence 99999999999998654321 11223589998756678999999999985
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-20 Score=153.04 Aligned_cols=119 Identities=15% Similarity=0.223 Sum_probs=98.8
Q ss_pred EEEEEEEEecCCCCCC-CCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 5 WVEVCLISARGLRRSS-SLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d-~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
.|.|+|++|++|+..+ ..+.+||||++.+....++||+++++ +.||+|||+|.|.|.+. ...|.|+|||++. +.
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~-~~ 75 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPRT---FRHLSFYIYDRDV-LR 75 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCCC---CCEEEEEEEECCC-CC
Confidence 3789999999999864 34678999999997666789999875 99999999999999864 3789999999997 68
Q ss_pred CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEEE
Q 020960 84 RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVCI 139 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~f 139 (319)
+|++||++.++|+++..+.. ...||.|..+ ..++.+|+|+++++|
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~-----------~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYG-----------KDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCC-----------cEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999999986432 1358888753 345679999999986
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=152.96 Aligned_cols=115 Identities=17% Similarity=0.280 Sum_probs=96.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~--~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
|+|+|++|++|+..+..++.||||++.+.+ ..++||+++++ +.||+|||+|.|.+... . ...|.|+|||++. +
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~-~-~~~l~v~v~d~d~-~- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQ-V-KNVLELTVMDEDY-V- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcc-c-CCEEEEEEEECCC-C-
Confidence 899999999999988778999999999953 46789999875 89999999999999764 2 3679999999987 5
Q ss_pred CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEe
Q 020960 84 RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCIS 140 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~ 140 (319)
+|++||++.++|+++..+.. ...|+.|.. +.+|+|++.|.+.
T Consensus 77 ~~~~iG~~~~~l~~l~~g~~-----------~~~~~~L~~----~~~g~l~~~~~~~ 118 (119)
T cd04036 77 MDDHLGTVLFDVSKLKLGEK-----------VRVTFSLNP----QGKEELEVEFLLE 118 (119)
T ss_pred CCcccEEEEEEHHHCCCCCc-----------EEEEEECCC----CCCceEEEEEEee
Confidence 99999999999999986532 245888874 3589999888763
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-20 Score=155.57 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=100.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
.+.|+|+|++|++|+..+..+.+||||++.+. ..++||+++++ +.||+|||+|.|.+.+. +...|.|+|||++. +
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-~~~~kT~vi~~-t~nP~Wne~f~f~v~~~--~~~~l~i~V~D~d~-~ 88 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-SQEHKTKVVSD-TLNPKWNSSMQFFVKDL--EQDVLCITVFDRDF-F 88 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-CEeeeccccCC-CCCCccCceEEEEecCc--cCCEEEEEEEECCC-C
Confidence 47899999999999998888899999999994 56889999875 89999999999999764 24789999999987 6
Q ss_pred CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEE
Q 020960 83 LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCI 139 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f 139 (319)
.+|++||++.|+|.+|........ .....+..| +++.+|+|+|+|.|
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~------~~~~~~~~~----~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESK------GPITKRLLL----HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCC------CcEEEEecc----ccccceeEEEEEEe
Confidence 889999999999999997433211 112234444 46788999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-20 Score=148.92 Aligned_cols=117 Identities=23% Similarity=0.256 Sum_probs=99.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
+.|+|+|++|++|+..+..+.+||||++.+.. .+++|+++++ +.||+|||+|.|.+.+. ...|.|+|||++. +.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~~T~~~~~-t~nP~W~e~f~~~~~~~---~~~l~~~v~d~~~-~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-ARLQTHTIYK-TLNPEWNKIFTFPIKDI---HDVLEVTVYDEDK-DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-EeeecceecC-CcCCccCcEEEEEecCc---CCEEEEEEEECCC-CC
Confidence 57999999999999988888899999999964 4679999875 89999999999999763 4789999999986 67
Q ss_pred CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEEE
Q 020960 84 RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVCI 139 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~f 139 (319)
++++||++.++|.++..+. ..||.|+.+ ..++.+|+|.|+++|
T Consensus 75 ~~~~iG~~~~~l~~~~~~~-------------~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNGE-------------RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEHHHCCCCC-------------ceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999999999987542 238888753 245689999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=152.48 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=100.2
Q ss_pred CCceEEEEEEEEecCCCCCCCC----------CCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcce
Q 020960 1 MGKIWVEVCLISARGLRRSSSL----------WKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAA 70 (319)
Q Consensus 1 M~~~~LeVtViSAr~Lk~~d~~----------gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~ 70 (319)
|..+.|+|+|++|++|+..+.. +..||||++.+++....+|+++++ +.||+|||+|.|.|.+ ...
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~----~~~ 75 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVHN----GRN 75 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcCC----CCE
Confidence 7889999999999999987652 468999999998766679999775 8999999999999974 378
Q ss_pred EEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEee
Q 020960 71 LHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISE 141 (319)
Q Consensus 71 L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~ 141 (319)
|.|+||+++. +.+|++||++.|+|+++..+... ....|+.|. ++|+|+|.+++..
T Consensus 76 l~~~v~d~~~-~~~~~~iG~~~i~l~~l~~~~~~---------~~~~w~~L~------~~G~l~l~~~~~~ 130 (132)
T cd04014 76 LELTVFHDAA-IGPDDFVANCTISFEDLIQRGSG---------SFDLWVDLE------PQGKLHVKIELKG 130 (132)
T ss_pred EEEEEEeCCC-CCCCceEEEEEEEhHHhcccCCC---------cccEEEEcc------CCcEEEEEEEEec
Confidence 9999999886 67899999999999999985111 113588886 5699999999875
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=151.35 Aligned_cols=118 Identities=22% Similarity=0.335 Sum_probs=97.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLR 84 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~k 84 (319)
.|+|+|++|++|+..+.+++.||||++++++..++||+++++ +.||+|||+|.|.+.. ...|.|+|||++. +.+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~-~~~ 74 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP----SSIITIQVFDQKK-FKK 74 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC----CCEEEEEEEECCC-CCC
Confidence 489999999999998888899999999998778899999875 8999999999999976 3789999999986 443
Q ss_pred --CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCC---CCccceEEEEEEE
Q 020960 85 --ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN---SNKPQGFIDVSVC 138 (319)
Q Consensus 85 --DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~---sgKp~G~L~lsL~ 138 (319)
|++||++.|+|+++....... ..|+.|+..+ +++..|+|.+.++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~----------~~~~~l~~~~~~~~~~~~G~v~~~~~ 123 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTG----------YQRLDLRKLKKSDNLSVRGKIVVSLS 123 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCc----------cceeEeecCCCCCCceEeeEEEEEeC
Confidence 689999999999998754321 2378886533 4667899988763
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-20 Score=197.19 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=137.1
Q ss_pred CceEEEEEEEEecCCCCCCC--CCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC
Q 020960 2 GKIWVEVCLISARGLRRSSS--LWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE 79 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~--~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~ 79 (319)
+-++|+|+|.+|++|+..+. .+..|||+++.+......||+|+++ +.||+|||+|++.|... ++.|.|+|||.+
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi~lns~---~d~L~LslyD~n 509 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYILLNSF---TDPLNLSLYDFN 509 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeec-cCCccccceEEEEeccc---CCceeEEEEecc
Confidence 35899999999999999873 3679999999998778889999875 99999999999999875 689999999988
Q ss_pred CCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeecCCCCCCCCCCCCCccCC
Q 020960 80 PIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEEREEPSSYPGNEGGIMLA 159 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~~~~~~~~~G~~~~~~~p 159 (319)
+ +.+|+++|++.++|..|..+...++ ..+++++ +.|..|+|+++++|++..+.+.+.+|..| +++
T Consensus 510 ~-~~sd~vvG~~~l~L~~L~~~~~~~n----------e~~e~~~--~~k~vGrL~yDl~ffp~~e~k~~~~~s~e--~~e 574 (1227)
T COG5038 510 S-FKSDKVVGSTQLDLALLHQNPVKKN----------ELYEFLR--NTKNVGRLTYDLRFFPVIEDKKELKGSVE--PLE 574 (1227)
T ss_pred c-cCCcceeeeEEechHHhhhcccccc----------ceeeeec--cCccceEEEEeeeeecccCCccccccccC--Ccc
Confidence 7 7999999999999999999887664 1577775 88999999999999999999999999995 999
Q ss_pred CCCCcee-eecCCCCC
Q 020960 160 DHSNNFM-LPTEGAPG 174 (319)
Q Consensus 160 d~~~gi~-~~~~~~~~ 174 (319)
|.|+||+ +++.+...
T Consensus 575 d~n~GI~k~tl~~~~~ 590 (1227)
T COG5038 575 DSNTGILKVTLREVKA 590 (1227)
T ss_pred cCCcceeEEEeecccc
Confidence 9999999 88877544
|
|
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=158.24 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=97.4
Q ss_pred eEEEEEEEEecCCCCCCC------------------------------CCCCCcEEEEEECCCCeEEeeecCCCCCCCee
Q 020960 4 IWVEVCLISARGLRRSSS------------------------------LWKLQWFAVGWIDPNNKYCTKIDASGKENPVW 53 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~------------------------------~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvW 53 (319)
++|+|+|++|++|.++|. .+.+||||+|.+++....||+++++ +.||+|
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~-~~nP~W 85 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN-SENPVW 85 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-CCCCcc
Confidence 789999999999998762 3558999999997666679999875 799999
Q ss_pred eEEEEEEeCCCCCCcceEEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCC---ccc
Q 020960 54 RTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSN---KPQ 130 (319)
Q Consensus 54 NEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sg---Kp~ 130 (319)
||+|.|.+.+. ...|.|+|||++. .++++||++.|+|+++..+... ..||.|+. .++ +..
T Consensus 86 nE~F~~~~~~~---~~~l~~~V~d~d~--~~~~~IG~~~i~l~~l~~g~~~-----------~~w~~L~~-~~~~~~~~~ 148 (158)
T cd04015 86 NESFHIYCAHY---ASHVEFTVKDNDV--VGAQLIGRAYIPVEDLLSGEPV-----------EGWLPILD-SNGKPPKPG 148 (158)
T ss_pred ceEEEEEccCC---CCEEEEEEEeCCC--cCCcEEEEEEEEhHHccCCCCc-----------ceEEECcC-CCCCCCCCC
Confidence 99999998764 4679999999985 4788999999999999864321 24899975 333 346
Q ss_pred eEEEEEEEEe
Q 020960 131 GFIDVSVCIS 140 (319)
Q Consensus 131 G~L~lsL~f~ 140 (319)
|+|+|+++|.
T Consensus 149 ~~l~v~~~f~ 158 (158)
T cd04015 149 AKIRVSLQFT 158 (158)
T ss_pred CEEEEEEEEC
Confidence 8999999984
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=149.99 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=99.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
+..|+|+|++|++|+..+.++..||||++.+. .+++||+++++ +.||+|||+|.|.+... ...|.|+|||++.
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~-~~~~kT~v~~~-t~nP~Wne~f~f~~~~~---~~~l~i~V~d~~~-- 74 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE-GESVRSPVQKD-TLSPEFDTQAIFYRKKP---RSPIKIQVWNSNL-- 74 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC-CEEEEeCccCC-CCCCcccceEEEEecCC---CCEEEEEEEECCC--
Confidence 67899999999999998888899999999996 45789999875 89999999999988764 5789999999885
Q ss_pred CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe---CCCCccceEEEEEEEEeec
Q 020960 83 LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK---KNSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr---~~sgKp~G~L~lsL~f~~~ 142 (319)
.+|++||++.++|.++.... ..++.|.+ ..+++..|+|.+++++.+.
T Consensus 75 ~~d~~lG~~~~~l~~~~~~~-------------~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 75 LCDEFLGQATLSADPNDSQT-------------LRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCCceEEEEEecccCCCcC-------------ceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 47999999999998753211 12456632 2578999999999988754
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=146.62 Aligned_cols=115 Identities=18% Similarity=0.299 Sum_probs=97.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLR 84 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~k 84 (319)
+|+|+|++|++|+..+..+..||||++.+. .+++||+++++ +.||+|||+|.|.+.+. +...|.|+|||++. +.+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-~~~~kT~v~~~-t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~-~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG-NEKYKSKVCSK-TLNPQWLEQFDLHLFDD--QSQILEIEVWDKDT-GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC-CEeEecccccC-CCCCceeEEEEEEecCC--CCCEEEEEEEECCC-CCC
Confidence 489999999999998888889999999995 56889999875 99999999999998764 24789999999987 679
Q ss_pred CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEe
Q 020960 85 ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCIS 140 (319)
Q Consensus 85 DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~ 140 (319)
|++||++.++|+++..+.. ...|+.|.. . +|+|++.|.+.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~-----------~~~w~~L~~--~---~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPREQT-----------HSLELELED--G---EGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCCCCc-----------eEEEEEccC--C---CcEEEEEEEec
Confidence 9999999999999886432 245899974 2 59999988774
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=147.99 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=97.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLR 84 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~k 84 (319)
.|+|+|++|++|+..+..+.+||||++.+. ..+++|+++++ +.||+|||+|.|.+.... ...|.|+|||++. +.+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~-~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~-~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN-GQTLETSVVKK-SCYPRWNEVFEFELMEGA--DSPLSVEVWDWDL-VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC-CEEEeceeecC-CCCCccCcEEEEEcCCCC--CCEEEEEEEECCC-CCC
Confidence 389999999999988877889999999995 46789999875 899999999999997642 4789999999987 678
Q ss_pred CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-----CCCccceEEEEEEE
Q 020960 85 ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-----NSNKPQGFIDVSVC 138 (319)
Q Consensus 85 DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-----~sgKp~G~L~lsL~ 138 (319)
|++||.+.++|.++...... ..||.|... ++++..|.|+|.|+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~-----------~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAKQE-----------EGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CcEeEEEEEEHHHcccCCCC-----------CCEEECCCCCCCCccccCceEEEEEEeC
Confidence 99999999999999764322 237888641 35678999999874
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-19 Score=148.51 Aligned_cols=124 Identities=22% Similarity=0.225 Sum_probs=101.1
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCCceeE
Q 020960 10 LISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLG 89 (319)
Q Consensus 10 ViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kDklIG 89 (319)
|++|++|+. ..++.||||++.+. ..+++|+++++ +.||+|||+|.|.+.....+...|.|+|||++. ..+|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~-~~~~kT~v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR-GVKKKTRVLEN-ELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC-CEeeecceeCC-CcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCceEE
Confidence 799999998 56889999999995 45789999875 799999999999997643336889999999987 67899999
Q ss_pred EEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeecCCCCCCC
Q 020960 90 TATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEEREEPSSY 149 (319)
Q Consensus 90 ~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~~~~~~~~ 149 (319)
++.++|+++..+.. ...|+.|...+....+|+|+++++|.+........
T Consensus 77 ~~~~~l~~l~~~~~-----------~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 125 (127)
T cd08373 77 SATVSLQDLVSEGL-----------LEVTEPLLDSNGRPTGATISLEVSYQPPDGAVGGW 125 (127)
T ss_pred EEEEEhhHcccCCc-----------eEEEEeCcCCCCCcccEEEEEEEEEeCCCCccCCC
Confidence 99999999996532 24588997533333589999999999987766543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=147.44 Aligned_cols=119 Identities=13% Similarity=0.178 Sum_probs=98.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLR 84 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~k 84 (319)
.|.|+|++|++|+..+..+++||||++.+++..+.||+++++ +.||+|||+|.|.+... ...|.|+|||++. +.+
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~-~~~ 75 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPG---FHTVSFYVLDEDT-LSR 75 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCC---CCEEEEEEEECCC-CCC
Confidence 389999999999999888899999999997655679999876 89999999999999764 4789999999987 689
Q ss_pred CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEE
Q 020960 85 ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVC 138 (319)
Q Consensus 85 DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~ 138 (319)
|++||++.+++.++...... . ..|+.|+.. ..++..|+|++.++
T Consensus 76 d~~iG~~~~~~~~~~~~~~~--------~--~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRG--------I--DGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCCC--------C--CcEEECeeeCCCCccccEEEEEEE
Confidence 99999999999988753211 1 248888642 34567899999876
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-19 Score=147.11 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=99.5
Q ss_pred eEEEEEEEEecCCCCCCC--CCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC
Q 020960 4 IWVEVCLISARGLRRSSS--LWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI 81 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~--~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~ 81 (319)
+.|+|+|++|++|...+. .+.+||||+|.+. ..+++|+++++ +.||+|||+|.|.+... +...|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-~~~~kT~~~~~-t~~P~Wne~f~~~~~~~--~~~~l~i~v~d~~~- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-AQRFKTQTIPN-TLNPKWNYWCEFPIFSA--QNQLLKLILWDKDR- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-CEEEecceecC-CcCCccCCcEEEEecCC--CCCEEEEEEEECCC-
Confidence 579999999999998877 7889999999994 56889999875 89999999999999762 24789999999986
Q ss_pred CCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC---CCCccceEEEEEEEE
Q 020960 82 FLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK---NSNKPQGFIDVSVCI 139 (319)
Q Consensus 82 ~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~---~sgKp~G~L~lsL~f 139 (319)
+.+|++||++.|+|.++...... .....||.|..+ ++.+.+|+|+|.+++
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~--------~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKT--------GQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCcceEEEEEHHHhhccccc--------CccceeEEccCcccCccccccceEEEEEEC
Confidence 57899999999999999853211 112358888753 224579999999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-19 Score=150.02 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=86.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC----C--CeEEeeecCCCCCCCeeeEEEEEEeCCC-CCCcceEEEEEEe
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDP----N--NKYCTKIDASGKENPVWRTKFAAVVDDS-NFQDAALHVEVYS 77 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~--~k~kTkV~k~gg~NPvWNEtF~f~V~~~-~lq~~~L~VeV~d 77 (319)
.|+|+|++|++|+..+ .+.+||||+|++.+ . ++++|++++ +++||+|||+|.|.|... .++...|+|+|||
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~-~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKN-NNWSPKYNETFQFILGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEec-CCCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence 4899999999999876 48899999999842 2 456899975 599999999999999753 2445789999999
Q ss_pred cCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 78 REPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
++. .++|++||++.|+|+++..+.. ...|+.|.+
T Consensus 79 ~d~-~~~dd~IG~~~l~l~~~~~~~~-----------~~~w~~L~~ 112 (120)
T cd08395 79 YCF-ARDDRLVGVTVLQLRDIAQAGS-----------CACWLPLGR 112 (120)
T ss_pred ecc-cCCCCEEEEEEEEHHHCcCCCc-----------EEEEEECcC
Confidence 875 5789999999999999996643 245888875
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.81 E-value=9e-19 Score=146.56 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=98.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
..|+|+|++|+ |...+.+++.||||+|.+++..+++|+++++ +.||+|||+|.|.+... ..|.|+|||++. +.
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~~----~~l~~~V~d~~~-~~ 74 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTPQ----STLEFKVWSHHT-LK 74 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCCC----CEEEEEEEeCCC-CC
Confidence 57999999999 5444557889999999997655889999874 89999999999999753 789999999987 68
Q ss_pred CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCC--CCccceEEEEEE
Q 020960 84 RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN--SNKPQGFIDVSV 137 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~--sgKp~G~L~lsL 137 (319)
+|++||++.++|+++....... ......|++|.+.. +++..|.|++.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGK------LENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCC------ccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999999999865432 12234588998633 458899999876
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-19 Score=149.38 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=83.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEe-CCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVV-DDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V-~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|...+ .+..||||++.+.+ ..++||+++++ +.||+|||+|.|.+ ....++...|.|+|||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence 467999999999999988 78899999999964 35789999875 89999999999997 4333446889999999
Q ss_pred cCCCCCCCceeEEEEEechhhcccc
Q 020960 78 REPIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
++. +.++++||++.|+|+++....
T Consensus 90 ~d~-~~~~~~lG~~~i~l~~l~~~~ 113 (122)
T cd08381 90 HDS-LVENEFLGGVCIPLKKLDLSQ 113 (122)
T ss_pred CCC-CcCCcEEEEEEEeccccccCC
Confidence 987 688999999999999998653
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=142.65 Aligned_cols=115 Identities=19% Similarity=0.292 Sum_probs=95.2
Q ss_pred eEEEEEEEEecCCCCCCCC------CCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 4 IWVEVCLISARGLRRSSSL------WKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~------gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
+.|+|+|++|++|...+.. +..||||++.+.+ .+++|+++++ +.||+|||+|.|.+... ....|.|+|||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~-t~~P~W~e~f~~~v~~~--~~~~l~i~v~d 76 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKE-NLNPKWNEVYEAVVDEV--PGQELEIELFD 76 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCC-CCCCcccceEEEEeCCC--CCCEEEEEEEe
Confidence 4799999999999987642 5789999999964 7889999875 89999999999999753 24789999999
Q ss_pred cCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEE
Q 020960 78 REPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCI 139 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f 139 (319)
++. . +|++||++.|+|+++..+... ..||.|.. ..+|+|++.++|
T Consensus 77 ~~~-~-~~~~iG~~~i~l~~l~~~~~~-----------~~w~~L~~----~~~G~~~~~~~~ 121 (121)
T cd08391 77 EDP-D-KDDFLGRLSIDLGSVEKKGFI-----------DEWLPLED----VKSGRLHLKLEW 121 (121)
T ss_pred cCC-C-CCCcEEEEEEEHHHhcccCcc-----------ceEEECcC----CCCceEEEEEeC
Confidence 986 4 999999999999999864321 24889974 367999998875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-19 Score=144.34 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=84.6
Q ss_pred eEEEEEEEEecCCCCCCCC----CCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC
Q 020960 4 IWVEVCLISARGLRRSSSL----WKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE 79 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~----gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~ 79 (319)
+.|+|+|++|++|+..+.. +.+||||+|.+. ..++||+++++ +.||+|||+|.|.|..... ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-~~~~kT~v~~~-t~nPvWne~f~f~v~~~~~-~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-RRVFRTSWRRH-TLNPVFNERLAFEVYPHEK-NFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-CEeEeeeeecC-CCCCcccceEEEEEeCccC-CCEEEEEEEECC
Confidence 5799999999999987643 248999999995 56889999986 8999999999999865422 468999999999
Q ss_pred CCCCCCceeEEEEEechhhcccccCCC
Q 020960 80 PIFLRERLLGTATIALKEFLAKYSKNS 106 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~~~~~~ 106 (319)
. +.+|++||++.++|++|..+..+++
T Consensus 78 ~-~~~dd~IG~~~l~L~~l~~~~~~~~ 103 (108)
T cd04039 78 K-FSFNDYVATGSLSVQELLNAAPQPD 103 (108)
T ss_pred C-CCCCcceEEEEEEHHHHHhhCCCCC
Confidence 7 6899999999999999999887654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=151.90 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=101.3
Q ss_pred EEEEEEEEecCCC--CCCCCCCCCcEEEEEE----CCCCeEEeeecCCCCCCCeeeEEEEEEeCCC------CCCcceEE
Q 020960 5 WVEVCLISARGLR--RSSSLWKLQWFAVGWI----DPNNKYCTKIDASGKENPVWRTKFAAVVDDS------NFQDAALH 72 (319)
Q Consensus 5 ~LeVtViSAr~Lk--~~d~~gk~DPYV~v~l----d~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~------~lq~~~L~ 72 (319)
.++|+|+.|++++ ..+..+..||||++++ +..++.||+|+++ ++||+|||+|.|.|+.. .+++..|.
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcEE
Confidence 5788888888854 5544567999999998 4457899999885 99999999999999764 13457899
Q ss_pred EEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeecCCCCC
Q 020960 73 VEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEEREEPS 147 (319)
Q Consensus 73 VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~~~~~~ 147 (319)
|+|||++..+.+|++||++.|+|+.|..+... ..++.|.+ ......|+|++.|++...+..+.
T Consensus 82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~-----------~~~~~L~~-~~k~~Gg~l~v~ir~r~p~~~~~ 144 (155)
T cd08690 82 FEVYHKGGFLRSDKLLGTAQVKLEPLETKCEI-----------HESVDLMD-GRKATGGKLEVKVRLREPLTGKQ 144 (155)
T ss_pred EEEEeCCCcccCCCeeEEEEEEcccccccCcc-----------eEEEEhhh-CCCCcCCEEEEEEEecCCCccce
Confidence 99999986224799999999999999876532 23888875 33345689999999988755443
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-19 Score=156.65 Aligned_cols=97 Identities=26% Similarity=0.345 Sum_probs=88.6
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCC
Q 020960 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREP 80 (319)
Q Consensus 1 M~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~ 80 (319)
|--+.|+|+|++|.+|...|..+++||||++++ ++++.||+++++ ++||+|||+|+|.|.+. ...|.++|||++.
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l-g~q~lkT~~v~~-n~NPeWNe~ltf~v~d~---~~~lkv~VyD~D~ 77 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL-GNQKLKTRVVYK-NLNPEWNEELTFTVKDP---NTPLKVTVYDKDT 77 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEE-CCeeeeeeeecC-CCCCcccceEEEEecCC---CceEEEEEEeCCC
Confidence 456889999999999999988899999999999 577999998875 89999999999999987 6889999999998
Q ss_pred CCCCCceeEEEEEechhhccccc
Q 020960 81 IFLRERLLGTATIALKEFLAKYS 103 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL~~~~~ 103 (319)
+.+|++||.|+|+|+.+.....
T Consensus 78 -fs~dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 78 -FSSDDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred -CCcccccceeeeccHHHHHHhh
Confidence 8999999999999999997654
|
|
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-19 Score=148.04 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=82.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP---NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE 79 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~---~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~ 79 (319)
.+.|.|+|++|++|+ . .+.+||||++.+.+ ..+++|+|+++ ++||+|||+|.|.|...+++...|.|+|||.+
T Consensus 13 ~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 13 KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 578999999999999 2 35689999999964 26889999875 99999999999999876677889999999999
Q ss_pred CCCCCCceeEEEEEechhhccc
Q 020960 80 PIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~ 101 (319)
+ ++++++||++.++|+++...
T Consensus 89 r-fs~~d~IG~v~l~l~~~~~~ 109 (118)
T cd08677 89 R-FSRHSTLGELRLKLADVSMM 109 (118)
T ss_pred C-CCCCceEEEEEEccccccCC
Confidence 8 89999999999999987443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=147.01 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=84.3
Q ss_pred CceEEEEEEEEecCCCCCCCC-CCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEE
Q 020960 2 GKIWVEVCLISARGLRRSSSL-WKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVY 76 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~-gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~ 76 (319)
..+.|+|+|++|++|...+.. +..||||++.+.+. .++||+++++ +.||+|||+|.|.|....++...|.|+||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 357899999999999988764 78999999999643 4779999875 99999999999999765455679999999
Q ss_pred ecCCCCCCCceeEEEEEechhhccc
Q 020960 77 SREPIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~ 101 (319)
+.+. +.++++||++.|+|+++.-.
T Consensus 92 ~~~~-~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 92 HSRT-LKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred eCCC-CcCcceEEEEEEEcCCcccC
Confidence 9987 68999999999999999654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-18 Score=145.24 Aligned_cols=118 Identities=23% Similarity=0.342 Sum_probs=95.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCC------------CeEEeeecCCCCCCCee-eEEEEEEeCCCCCCcceE
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPN------------NKYCTKIDASGKENPVW-RTKFAAVVDDSNFQDAAL 71 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~------------~k~kTkV~k~gg~NPvW-NEtF~f~V~~~~lq~~~L 71 (319)
.+.|++++|++|+ .+.+++.||||++.+.+. +++||+++++ ++||+| ||+|.|.+... +.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~~----~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLPT----DVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCCC----CEE
Confidence 5789999999998 667899999999999642 3789999875 899999 99999998643 689
Q ss_pred EEEEEecCCCCCC---CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEE
Q 020960 72 HVEVYSREPIFLR---ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSV 137 (319)
Q Consensus 72 ~VeV~d~~~~~~k---DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL 137 (319)
.|+|||++. ..+ |++||++.|+|++|..+... .+...+|+|.++ ..++.+|+|.+.+
T Consensus 76 ~v~V~D~~~-~~~~~~~d~lG~~~i~l~~l~~~~~~--------~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFA-KSRPIIRRFLGKLSIPVQRLLERHAI--------GDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCC-CCCccCCceEEEEEEEHHHhcccccC--------CceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999999763 222 79999999999999987543 234668999864 3457789998865
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=145.47 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=84.5
Q ss_pred CceEEEEEEEEecCCCCCCC-CCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEE
Q 020960 2 GKIWVEVCLISARGLRRSSS-LWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVY 76 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~-~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~ 76 (319)
..+.|+|+|++|++|...+. .+..||||++.+.+ ..++||+++++ +.||+|||+|.|.|....++...|.|+||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 35789999999999987765 46899999999953 24679999875 89999999999999764455678999999
Q ss_pred ecCCCCCCCceeEEEEEechhhccccc
Q 020960 77 SREPIFLRERLLGTATIALKEFLAKYS 103 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~~~ 103 (319)
|.+. +.++++||++.|+|.++.....
T Consensus 92 d~~~-~~~~~~lG~~~i~l~~~~~~~~ 117 (125)
T cd04029 92 HYDR-FGRNTFLGEVEIPLDSWNFDSQ 117 (125)
T ss_pred ECCC-CCCCcEEEEEEEeCCcccccCC
Confidence 9987 6899999999999999987643
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=145.91 Aligned_cols=97 Identities=18% Similarity=0.276 Sum_probs=83.8
Q ss_pred ceEEEEEEEEecCCCCCCCC-CCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSL-WKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~-gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|...+.. +..||||++.+.+ ..++||+|+++ +.||+|||+|.|.|....++...|.|+|||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 46899999999999988765 7899999999953 24679999875 899999999999997654556789999999
Q ss_pred cCCCCCCCceeEEEEEechhhccc
Q 020960 78 REPIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~ 101 (319)
.+. +.++++||++.|+|.++...
T Consensus 93 ~~~-~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 93 RDS-LGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred CCC-CCCCcEeEEEEEecCccccC
Confidence 987 68999999999999999655
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-18 Score=139.49 Aligned_cols=122 Identities=18% Similarity=0.148 Sum_probs=98.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCC--CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPN--NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~--~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
.|+|+|++|++|+..+..+..||||++.+... .++||+++++ +.||+|||+|.|.+... ....|.|+|||++. +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~-~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAG--EPLWISATVWDRSF-V 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCC--CCCEEEEEEEECCC-C
Confidence 68999999999999888888999999998643 4679999875 89999999999999764 14789999999986 5
Q ss_pred CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeecCC
Q 020960 83 LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEERE 144 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~~~ 144 (319)
.+|++||++.++|.++...... .....|+.|. ++|+|++.|.+..+++
T Consensus 78 ~~~~~iG~~~i~l~~~~~~~~~--------~~~~~w~~l~------~~g~i~l~~~~~~~~~ 125 (126)
T cd04043 78 GKHDLCGRASLKLDPKRFGDDG--------LPREIWLDLD------TQGRLLLRVSMEGERD 125 (126)
T ss_pred CCCceEEEEEEecCHHHcCCCC--------CCceEEEEcC------CCCeEEEEEEEeeecc
Confidence 7899999999999987654211 1124588886 2689999999887664
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-18 Score=141.40 Aligned_cols=98 Identities=27% Similarity=0.409 Sum_probs=84.5
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCC-CcceEEEEEEecCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNF-QDAALHVEVYSREPIF 82 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~l-q~~~L~VeV~d~~~~~ 82 (319)
+.|+|+|++|++|+..+..+++||||++++. ..+++|+++++++.||+|||+|.|.+..... ....|.|+|||++. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~-~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~ 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR-TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-F 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC-CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-C
Confidence 5799999999999998888899999999995 4567888887668999999999999987521 24689999999987 6
Q ss_pred CCCceeEEEEEechhhccccc
Q 020960 83 LRERLLGTATIALKEFLAKYS 103 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~ 103 (319)
.+|++||++.|+|+++..+..
T Consensus 79 ~~d~~iG~~~i~l~~l~~~~~ 99 (124)
T cd04049 79 SDDDFIGEATIHLKGLFEEGV 99 (124)
T ss_pred CCCCeEEEEEEEhHHhhhCCC
Confidence 799999999999999997654
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=141.47 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=82.9
Q ss_pred eEEEEEEEEecCCCCCCCC-CCCCcEEEEEECC--CCeEEeeecCCCCCCCeeeEEEEEEeCCCCC-CcceEEEEEEecC
Q 020960 4 IWVEVCLISARGLRRSSSL-WKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAVVDDSNF-QDAALHVEVYSRE 79 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~-gk~DPYV~v~ld~--~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~l-q~~~L~VeV~d~~ 79 (319)
+.|+|+|++|++|...+.. +.+||||+|.+.+ +.++||+++++ +.||+|||+|.|.+....+ ....|.|+|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 5799999999999998887 8899999999953 45789999875 8999999999998865322 2468999999999
Q ss_pred CCCCCCceeEEEEEechhhcccc
Q 020960 80 PIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
. +.+|++||++.++|++|....
T Consensus 80 ~-~~~dd~lG~~~i~l~~l~~~~ 101 (111)
T cd04041 80 R-FTADDRLGRVEIDLKELIEDR 101 (111)
T ss_pred C-CCCCCcceEEEEEHHHHhcCC
Confidence 7 688999999999999999543
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-18 Score=142.08 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=89.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
+.|+|+|++|++|+..+..+.+||||+|++++..+++|+++++ +.||+|||+|.|.+... ...|.|+|||++. +.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~-~~ 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTSP---NQKITLEVMDYEK-VG 75 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecCC---CCEEEEEEEECCC-CC
Confidence 5799999999999998888899999999997666789998764 89999999999998765 4789999999987 68
Q ss_pred CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 84 RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
+|++||++.++|.++.... . ..||.|.+
T Consensus 76 ~d~~IG~~~~~l~~l~~~~-~-----------~~~~~~~~ 103 (120)
T cd04045 76 KDRSLGSVEINVSDLIKKN-E-----------DGKYVEYD 103 (120)
T ss_pred CCCeeeEEEEeHHHhhCCC-C-----------CceEEecC
Confidence 8999999999999999862 1 23888886
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=142.12 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=84.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..+..||||+|.+.+ ..++||+++++ +.||+|||+|.|.+....++...|.|+||++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 468999999999999988888899999999953 46789999875 8999999999999976434457899999998
Q ss_pred CCCC-CCCceeEEEEEechhhcccc
Q 020960 79 EPIF-LRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 79 ~~~~-~kDklIG~a~IpL~dL~~~~ 102 (319)
+..+ .+|++||++.|+|+++..+.
T Consensus 94 ~~~~~~~~~~iG~~~i~l~~l~~~~ 118 (127)
T cd04030 94 KSFLSREKKLLGQVLIDLSDLDLSK 118 (127)
T ss_pred CcccCCCCceEEEEEEecccccccC
Confidence 8621 58999999999999996653
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=139.18 Aligned_cols=114 Identities=25% Similarity=0.294 Sum_probs=95.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCC
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRE 85 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kD 85 (319)
|+|+|++|++|...+..+..||||++.+++...++|+++++ +.||+|||+|.|.+... ....|.|+|||++. +.+|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~-~~~~ 76 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSR--VRAVLKVEVYDWDR-GGKD 76 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccC--CCCEEEEEEEeCCC-CCCC
Confidence 68999999999988877889999999998777789999865 89999999999999763 24789999999986 6789
Q ss_pred ceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEE
Q 020960 86 RLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDV 135 (319)
Q Consensus 86 klIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~l 135 (319)
++||++.++|.++..+.. ...|+.|+. .++...|+|.+
T Consensus 77 ~~iG~~~~~l~~l~~~~~-----------~~~~~~L~~-~g~~~~~~~~~ 114 (115)
T cd04040 77 DLLGSAYIDLSDLEPEET-----------TELTLPLDG-QGGGKLGAVFL 114 (115)
T ss_pred CceEEEEEEHHHcCCCCc-----------EEEEEECcC-CCCccCceEEc
Confidence 999999999999987432 245888875 56667787754
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=141.88 Aligned_cols=98 Identities=21% Similarity=0.220 Sum_probs=84.8
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID--PNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREP 80 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld--~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~ 80 (319)
.+.|.|+|++|++|...+..+..||||++.+. ...++||+++++ +.||+|||+|.|.+....+....|.|+|||++.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 46899999999999988877889999999994 356789999875 899999999999987643445689999999986
Q ss_pred CCCCCceeEEEEEechhhcccc
Q 020960 81 IFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL~~~~ 102 (319)
+.+|++||++.|+|+++..+.
T Consensus 94 -~~~~~~iG~~~i~l~~~~~~~ 114 (124)
T cd08387 94 -FSRDECIGVVELPLAEVDLSE 114 (124)
T ss_pred -CCCCceeEEEEEecccccCCC
Confidence 678999999999999998654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=139.54 Aligned_cols=93 Identities=26% Similarity=0.367 Sum_probs=81.7
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEECCCCeEEeeecCCCCCCCee-eEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 6 VEVCLISARGLRRSSS-LWKLQWFAVGWIDPNNKYCTKIDASGKENPVW-RTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~-~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvW-NEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
|+|+|++|++|+..+. .+..||||++.+.+ .++||+++++ +.||+| ||+|.|.+....+++..|.|+|||++. +.
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-YS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceecC-CCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-CC
Confidence 6899999999998774 57899999999965 7889999875 899999 999999997654445789999999987 67
Q ss_pred CCceeEEEEEechhhccc
Q 020960 84 RERLLGTATIALKEFLAK 101 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~ 101 (319)
+|++||++.++|.++...
T Consensus 78 ~~~~iG~~~~~l~~l~~~ 95 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLK 95 (110)
T ss_pred CCCceEEEEEeHHHhccc
Confidence 899999999999999985
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-18 Score=140.38 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=93.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC---
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI--- 81 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~--- 81 (319)
.|+|+|++|++|...+..+..||||++.+. ..+++|+++++ +.||+|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-~~~~kT~~v~~-t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~~~~ 76 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG-KTKKRTKTIPQ-NLNPVWNEKFHFECHNS---SDRIKVRVWDEDDDIKS 76 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC-CEeeecceecC-CCCCccceEEEEEecCC---CCEEEEEEEECCCCccc
Confidence 689999999999998888889999999995 56789999875 89999999999998654 36799999998741
Q ss_pred -------CCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEE
Q 020960 82 -------FLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSV 137 (319)
Q Consensus 82 -------~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL 137 (319)
..+|++||++.|+|.++.... ..||.|.++ ..++.+|+|.+.+
T Consensus 77 ~~~~~~~~~~~~~iG~~~i~l~~~~~~~-------------~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 77 RLKQKFTRESDDFLGQTIIEVRTLSGEM-------------DVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccceeccccCCCcceEEEEEhHHccCCC-------------CeEEECccCCCCCcEeEEEEEEC
Confidence 147999999999999874221 248999853 2346799999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-18 Score=140.77 Aligned_cols=97 Identities=22% Similarity=0.267 Sum_probs=83.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREP 80 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~--~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~ 80 (319)
.+.|+|+|++|++|...+..+..||||++.+.+ ..++||+++++ +.||+|||+|.|.+....++...|.|+|||++.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 578999999999999888778899999999954 35779999875 899999999999987533335689999999987
Q ss_pred CCCCCceeEEEEEechhhccc
Q 020960 81 IFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL~~~ 101 (319)
+.+|++||++.|+|+++..+
T Consensus 94 -~~~~~~lG~~~i~l~~~~~~ 113 (124)
T cd08385 94 -FSKHDLIGEVRVPLLTVDLG 113 (124)
T ss_pred -CCCCceeEEEEEecCcccCC
Confidence 68999999999999998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=147.27 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=84.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeC-------------CCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVD-------------DSNFQ 67 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~-------------~~~lq 67 (319)
.|+|+|++|++|.. ..+..||||+|.+.+. .++||+|+++ +.||+|||+|.|.+. ...++
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCccccc
Confidence 48999999999987 4578999999999653 5779999875 899999999999994 11123
Q ss_pred cceEEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC
Q 020960 68 DAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK 124 (319)
Q Consensus 68 ~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~ 124 (319)
...|.|+||+++. +.+|++||++.|+|.++...... ...||.|..+
T Consensus 78 ~~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~~----------~~~W~~L~~~ 123 (148)
T cd04010 78 KLELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAGS----------HQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEEcCCC-CCCCceeEEEEEecccccccCCc----------CcceeecCCc
Confidence 4689999999987 57999999999999999876211 1348999753
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-18 Score=139.35 Aligned_cols=97 Identities=20% Similarity=0.314 Sum_probs=82.6
Q ss_pred ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSS-SLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d-~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|+..+ ..+..||||++.+.+. .++||++++ ++.||+|||+|.|.+....++...|.|+|||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK-NTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccC-CCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 578999999999999887 5678999999998532 568999976 4899999999999987643445789999999
Q ss_pred cCCCCCCCceeEEEEEechhhccc
Q 020960 78 REPIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~ 101 (319)
++. +.++++||++.++|+++..+
T Consensus 92 ~~~-~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd08521 92 HDR-FGRNTFLGEVEIPLDSWDLD 114 (123)
T ss_pred CCC-CcCCceeeEEEEeccccccc
Confidence 987 68899999999999999644
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-18 Score=141.22 Aligned_cols=96 Identities=18% Similarity=0.298 Sum_probs=79.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|...+ .+..||||++.+.+. .++||+++++ +.||+|||+|.|.+....+ ...|.|+||++
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~-~~~l~v~V~~~ 87 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDY-QKRLLVTVWNK 87 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHh-CCEEEEEEECC
Confidence 468999999999999887 678999999999642 4679999875 8999999999999976433 35688999998
Q ss_pred CCCCCCCceeEEEEEechhhccc
Q 020960 79 EPIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~ 101 (319)
+....++++||++.|+|.++..+
T Consensus 88 ~~~~~~~~~lG~~~i~l~~~~~~ 110 (119)
T cd08685 88 LSKSRDSGLLGCMSFGVKSIVNQ 110 (119)
T ss_pred CCCcCCCEEEEEEEecHHHhccC
Confidence 86223579999999999999854
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=9e-18 Score=135.86 Aligned_cols=102 Identities=23% Similarity=0.301 Sum_probs=85.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLR 84 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~k 84 (319)
.|.|+|++|++|+..+..+.+||||++.+.+ +++||+++++ +.||+|||+|.|.+.... ...|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~v~~~~--~~~l~v~v~d~~~---- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKER-TNNPVWEEGFTFLVRNPE--NQELEIEVKDDKT---- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccC-CCCCcccceEEEEeCCCC--CCEEEEEEEECCC----
Confidence 3899999999999888778899999999964 7889999874 899999999999998742 4689999999872
Q ss_pred CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 85 ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 85 DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
|++||++.|+|.++...... ....||.|..
T Consensus 73 ~~~iG~~~i~l~~l~~~~~~---------~~~~w~~L~~ 102 (105)
T cd04050 73 GKSLGSLTLPLSELLKEPDL---------TLDQPFPLDN 102 (105)
T ss_pred CCccEEEEEEHHHhhccccc---------eeeeeEecCC
Confidence 89999999999999976411 1234899874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-18 Score=142.85 Aligned_cols=97 Identities=22% Similarity=0.256 Sum_probs=84.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC-----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN-----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~-----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|+||+..+..+..||||++.+.+. .++||+++++ +.||+|||+|.|.|....++...|.|+||+
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 4689999999999998776678999999999542 4789999875 999999999999998766667899999999
Q ss_pred cCCCCCCCceeEEEEEechhhccc
Q 020960 78 REPIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~ 101 (319)
.++ +.++++||++.|+|+++...
T Consensus 92 ~~~-~~~~~~lG~~~i~L~~~~~~ 114 (124)
T cd08680 92 VGP-DQQEECLGGAQISLADFESS 114 (124)
T ss_pred CCC-CCceeEEEEEEEEhhhccCC
Confidence 986 68999999999999999544
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-18 Score=145.55 Aligned_cols=105 Identities=24% Similarity=0.257 Sum_probs=85.9
Q ss_pred ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSS-SLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d-~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|...+ ..+..||||++++.+. .++||+++++ +.||+|||+|.|.|.. ....|.|+||+
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l---~~~~L~v~V~~ 103 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSP---TGKTLQVIVWG 103 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcC---CCCEEEEEEEe
Confidence 468999999999998764 4577999999999543 4789999875 9999999999999973 36889999995
Q ss_pred -cCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 78 -REPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 78 -~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
.+. +.++++||++.|+|+++..+.. ...||.|..
T Consensus 104 d~~~-~~~~~~iG~~~i~L~~l~~~~~-----------~~~Wy~L~~ 138 (146)
T cd04028 104 DYGR-MDKKVFMGVAQILLDDLDLSNL-----------VIGWYKLFP 138 (146)
T ss_pred CCCC-CCCCceEEEEEEEcccccCCCC-----------ceeEEecCC
Confidence 554 6789999999999999854332 235999985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=140.02 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=81.8
Q ss_pred ceEEEEEEEEecCCCCCCCC-CCCCcEEEEEECC--CCeEEeeecCCCCCCCeeeEEEEE-EeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSL-WKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAA-VVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~-gk~DPYV~v~ld~--~~k~kTkV~k~gg~NPvWNEtF~f-~V~~~~lq~~~L~VeV~d~ 78 (319)
...|+|+|++|++|+..+.. +..||||++.+.+ .++.||+++++ +.||+|||+|.| .++...++...|+|+|||+
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 56899999999999988776 7899999999953 45779999875 899999999999 4554333346799999999
Q ss_pred CCCCCCCceeEEEEEechhhccc
Q 020960 79 EPIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~ 101 (319)
+. +.+|++||++.|+|+++.-.
T Consensus 94 d~-~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 94 DR-YSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred CC-CCCCceeEEEEEeccccCCC
Confidence 87 68999999999999999764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=138.36 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=97.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCC-----CC--CcceEEEEEEe
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDS-----NF--QDAALHVEVYS 77 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~-----~l--q~~~L~VeV~d 77 (319)
.|+|+|++|++|...+..+..||||+|.+. ..++||+++++ +.||+|||+|.|.+... .+ ....|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~-~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL-NQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC-CeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 589999999999988888899999999995 56889999875 89999999999975321 00 12568999999
Q ss_pred cCCCCCCCceeEEEEE-echhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeec
Q 020960 78 REPIFLRERLLGTATI-ALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 78 ~~~~~~kDklIG~a~I-pL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~ 142 (319)
++. +.+|++||++.+ ++..+.... . ......|+.|.+ .++.+|+|.|++.+.+.
T Consensus 80 ~d~-~~~d~~iG~~~i~~~~~~~~~~-~-------~~~~~~W~~L~~--~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 80 QDS-VGKDEFLGRSVAKPLVKLDLEE-D-------FPPKLQWFPIYK--GGQSAGELLAAFELIEV 134 (135)
T ss_pred CcC-CCCCccceEEEeeeeeecccCC-C-------CCCCceEEEeec--CCCchhheeEEeEEEEe
Confidence 987 688999999997 444443321 1 122345899974 67799999999998753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=137.89 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=82.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCeeeEEEEEEeCCC-CCCcceEEEEEEecC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID--PNNKYCTKIDASGKENPVWRTKFAAVVDDS-NFQDAALHVEVYSRE 79 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld--~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~-~lq~~~L~VeV~d~~ 79 (319)
+..|+|+|++|++|+..+..+..||||++.+. ...+.||+++++ +.||+|||+|.|.+... .+....|.|+|||++
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 56899999999999988878889999999993 456789999875 89999999999985322 133467999999998
Q ss_pred CCCCCCceeEEEEEechhhccc
Q 020960 80 PIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~ 101 (319)
. +.+|++||++.|+|+++...
T Consensus 94 ~-~~~~~~iG~~~i~l~~l~~~ 114 (125)
T cd08386 94 R-FSRNDPIGEVSLPLNKVDLT 114 (125)
T ss_pred C-CcCCcEeeEEEEecccccCC
Confidence 7 68899999999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=137.54 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=80.1
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCC-CCCCcceEEEEEE
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDD-SNFQDAALHVEVY 76 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~-~~lq~~~L~VeV~ 76 (319)
..+.|.|+|++|++|+..+..+..||||++.+.+ ..++||+++++ +.||+|||+|.|.+.. ..+....|.|+||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 3578999999999999988778899999999964 35779999875 8999999999998643 2233478999999
Q ss_pred ecCCCCCCCceeEEEEEechh
Q 020960 77 SREPIFLRERLLGTATIALKE 97 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~d 97 (319)
|++. +.+|++||++.++|++
T Consensus 93 d~~~-~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 93 DYDR-DGENDFLGEVVIDLAD 112 (125)
T ss_pred eCCC-CCCCcEeeEEEEeccc
Confidence 9987 6789999999999999
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-17 Score=133.52 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=94.6
Q ss_pred eEEEEEEEEecCCCCCC--CCCCCCcEEEEEECC-----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEE
Q 020960 4 IWVEVCLISARGLRRSS--SLWKLQWFAVGWIDP-----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVY 76 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d--~~gk~DPYV~v~ld~-----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~ 76 (319)
..|+|+|++|++|+..+ ..+..||||++++.+ ..++||+++++++.||+|||+|.|.+.... ...|.|+||
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~ 79 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVY 79 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEE
Confidence 47999999999999877 467899999999952 356899998765569999999999987542 367999999
Q ss_pred ecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCC--ccceEEEEEEEE
Q 020960 77 SREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSN--KPQGFIDVSVCI 139 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sg--Kp~G~L~lsL~f 139 (319)
|++. + +|++||++.++|++|..+. .+++|+. .++ ...|.|.+.+.+
T Consensus 80 d~~~-~-~~~~iG~~~~~l~~l~~g~--------------~~~~l~~-~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 80 DEDS-G-DDDFLGQACLPLDSLRQGY--------------RHVPLLD-SKGEPLELSTLFVHIDI 127 (128)
T ss_pred eCCC-C-CCcEeEEEEEEhHHhcCce--------------EEEEecC-CCCCCCcceeEEEEEEE
Confidence 9986 4 9999999999999996432 3678875 344 457888888775
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=136.78 Aligned_cols=98 Identities=21% Similarity=0.282 Sum_probs=83.8
Q ss_pred ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC
Q 020960 3 KIWVEVCLISARGLRRSS-SLWKLQWFAVGWID--PNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE 79 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d-~~gk~DPYV~v~ld--~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~ 79 (319)
.+.|+|+|++|++|+..+ ..+..||||++.+. ...+++|+++++ +.||+|||+|.|.+....++...|.|+|||.+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 91 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence 568999999999999987 56789999999984 345678998875 89999999999999764344568999999988
Q ss_pred CCCCCCceeEEEEEechhhcccc
Q 020960 80 PIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
. ..++++||++.|+|+++....
T Consensus 92 ~-~~~~~~iG~~~i~L~~l~~~~ 113 (123)
T cd08390 92 R-FSRHCIIGHVLFPLKDLDLVK 113 (123)
T ss_pred c-CCCCcEEEEEEEeccceecCC
Confidence 7 578999999999999999754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=133.56 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=86.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLR 84 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~k 84 (319)
.|+|+|++|++|+.. +.+||||++.+++..+++|+++++ .||+|||+|.|.+....++...|.|+||+.+. ..+
T Consensus 1 ~L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~~ 74 (117)
T cd08383 1 SLRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KDR 74 (117)
T ss_pred CeEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEeccc-CCC
Confidence 389999999999975 679999999997655689999864 89999999999998753334678888888875 445
Q ss_pred CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCC-CCccceEEEEEEEE
Q 020960 85 ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN-SNKPQGFIDVSVCI 139 (319)
Q Consensus 85 DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~-sgKp~G~L~lsL~f 139 (319)
+..+|+ +.|..+..+.. ...||.|..++ .++..|+|+|.++|
T Consensus 75 ~~~~g~--v~l~~~~~~~~-----------~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 75 DIVIGK--VALSKLDLGQG-----------KDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eeEEEE--EEecCcCCCCc-----------ceeEEECccCCCCCCcCceEEEEEEC
Confidence 555555 55555544321 13489997532 24568999999986
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=139.56 Aligned_cols=96 Identities=23% Similarity=0.370 Sum_probs=82.3
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCeeeEEEEEE-eCCCCCCcceEEEEEEecC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAV-VDDSNFQDAALHVEVYSRE 79 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~--~~k~kTkV~k~gg~NPvWNEtF~f~-V~~~~lq~~~L~VeV~d~~ 79 (319)
...|+|+|++|++|...+..+..||||++.+.+ .+++||+|++ + .||+|||+|.|. ++...++...|.|+||+.+
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 568999999999999887777789999988743 4688999976 4 899999999998 7654455688999999998
Q ss_pred CCCCCCceeEEEEEechhhccc
Q 020960 80 PIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~ 101 (319)
. +.++++||++.|+|+++...
T Consensus 93 ~-~~~~~~lG~~~i~L~~l~~~ 113 (124)
T cd08389 93 R-MRKERLIGEKVVPLSQLNLE 113 (124)
T ss_pred C-cccCceEEEEEEeccccCCC
Confidence 7 78999999999999999654
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=138.20 Aligned_cols=94 Identities=21% Similarity=0.323 Sum_probs=83.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
+.|+|+|++|++|...+. +..||||++.+. .+++||+++++ +.||+|||+|.|.+.+. ...|.|+|||++. +.
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g-~~~~kT~vvk~-t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~-~~ 74 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG-NQKVKTRVIKK-NLNPVWNEELTLSVPNP---MAPLKLEVFDKDT-FS 74 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEEC-CEEEEeeeEcC-CCCCeecccEEEEecCC---CCEEEEEEEECCC-CC
Confidence 679999999999998776 789999999995 57899999875 89999999999999875 5789999999997 78
Q ss_pred CCceeEEEEEechhhcccccC
Q 020960 84 RERLLGTATIALKEFLAKYSK 104 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~ 104 (319)
+|++||++.++|.+|......
T Consensus 75 ~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 75 KDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred CCCEEEEEEEEHHHhhhhhhh
Confidence 999999999999999876543
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=132.58 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=84.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCC--CCcceEEEEEEecCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN--FQDAALHVEVYSREPI 81 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~--lq~~~L~VeV~d~~~~ 81 (319)
..|+|+|++|++|+ .+..||||+++++ .+++||+++++ +.||+|||+|.|.+.... ++...|.|+|||.+.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~-~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~- 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVG-GQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS- 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEEC-CEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-
Confidence 46999999999998 3578999999997 45789999764 899999999999985432 224689999999987
Q ss_pred CCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 82 FLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 82 ~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
+.+|++||++.|+|+++..+.... ....|+.|+.
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~--------~~~~w~~L~~ 110 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHA--------FLRKWLLLTD 110 (111)
T ss_pred cccCCccEEEEECCccccCCCCCc--------ceEEEEEeeC
Confidence 678999999999999998764321 2245888863
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=7e-17 Score=136.18 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=83.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC------CCeEEeeecCCCCCCCeeeEEEEEEeCCCC--CCcceEEEE
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP------NNKYCTKIDASGKENPVWRTKFAAVVDDSN--FQDAALHVE 74 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~------~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~--lq~~~L~Ve 74 (319)
...|+|+|++|++|+..+..+..||||+|.+.+ ..++||+++++ +.||+|||+|.|.+.... .....|.|+
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 467999999999999888778999999999953 35789999875 899999999999987531 124689999
Q ss_pred EEecCCCCCCCceeEEEEEechhhcccc
Q 020960 75 VYSREPIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 75 V~d~~~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
|||++. +.+|++||++.++|++|..-.
T Consensus 94 V~d~d~-~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 94 VKDYDL-LGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred EEecCC-CCCCcEeEEEEEeHHHCCccc
Confidence 999987 678999999999999999543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-17 Score=137.10 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=78.8
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
.+.|+|+|++|++|+. +.++..||||+|.+.+ +++||+++++ +.||+|||+|.|.+... .+...|.|+|||++. +
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-~~~kT~vi~~-t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d~-~ 101 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-QEKRTEVIWN-NNNPRWNATFDFGSVEL-SPGGKLRFEVWDRDN-G 101 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-ccccCceecC-CCCCcCCCEEEEecccC-CCCCEEEEEEEeCCC-C
Confidence 4789999999999984 5668899999999964 4889999875 89999999999975332 125789999999997 6
Q ss_pred CCCceeEEEEEechhhcc
Q 020960 83 LRERLLGTATIALKEFLA 100 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~ 100 (319)
++|++||++.++|.....
T Consensus 102 s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 102 WDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCeeEEEEEEecCCce
Confidence 899999999999997663
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=168.15 Aligned_cols=149 Identities=16% Similarity=0.224 Sum_probs=115.2
Q ss_pred eEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEECCCCeEEe
Q 020960 4 IWVEVCLISARGLRRSSS------------------------------------------LWKLQWFAVGWIDPNNKYCT 41 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~------------------------------------------~gk~DPYV~v~ld~~~k~kT 41 (319)
+.|+|+|.+|++|.+++. .+++||||+|.+....+.||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 679999999999975221 23569999999966667799
Q ss_pred eecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEe
Q 020960 42 KIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQL 121 (319)
Q Consensus 42 kV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~L 121 (319)
+|+++ +.||+|||+|.|.|.+. ...|.|+|||++. + ++++||++.|+|++|..+... ..|+.|
T Consensus 94 rVi~n-~~NPvWNE~F~f~vah~---~s~L~f~VkD~D~-~-gaD~IG~a~IPL~~L~~Ge~v-----------d~Wl~L 156 (868)
T PLN03008 94 RVLKN-SQEPLWDEKFNISIAHP---FAYLEFQVKDDDV-F-GAQIIGTAKIPVRDIASGERI-----------SGWFPV 156 (868)
T ss_pred EeCCC-CCCCCcceeEEEEecCC---CceEEEEEEcCCc-c-CCceeEEEEEEHHHcCCCCce-----------EEEEEc
Confidence 99875 88999999999999875 4689999999986 3 679999999999999986432 358999
Q ss_pred EeCCCCc---cceEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCceeeecCCCCCCCCCCCC
Q 020960 122 RKKNSNK---PQGFIDVSVCISEEREEPSSYPGNEGGIMLADHSNNFMLPTEGAPGQNYPTQR 181 (319)
Q Consensus 122 rr~~sgK---p~G~L~lsL~f~~~~~~~~~~~G~~~~~~~pd~~~gi~~~~~~~~~~~yp~~~ 181 (319)
.+ .++| ..++|+|+|+|.+..+.+. +..++. .-| ...|+|..-||+.+
T Consensus 157 l~-~~~kp~k~~~kl~v~lqf~pv~~~~~-~~~gv~--~~~--------~~~gvp~t~Fp~r~ 207 (868)
T PLN03008 157 LG-ASGKPPKAETAIFIDMKFTPFDQIHS-YRCGIA--GDP--------ERRGVRRTYFPVRK 207 (868)
T ss_pred cc-cCCCCCCCCcEEEEEEEEEEcccccc-cccccc--CCc--------CCCCCCCccccCCC
Confidence 86 4443 4689999999999877765 443332 111 23477888888653
|
|
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=135.75 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=82.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
+.|.|+|++||+|...+ ..||||++.+ ++++.+|+++++ .||+|||+|.|.+... ...|.|+|||++ ..
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~-g~~k~kT~v~~~--~nP~WnE~F~F~~~~~---~~~L~v~V~dkd--~~ 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV-QNVKSTTIAVRG--SQPCWEQDFMFEINRL---DLGLVIELWNKG--LI 70 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEE-CCEEeEeeECCC--CCCceeeEEEEEEcCC---CCEEEEEEEeCC--Cc
Confidence 47999999999997654 3589999999 467889999864 5999999999999764 355999999988 46
Q ss_pred CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 84 RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
+|++||++.|+|+++...... ....||+|..
T Consensus 71 ~DD~lG~v~i~L~~v~~~~~~---------~~~~Wy~L~~ 101 (127)
T cd08394 71 WDTLVGTVWIPLSTIRQSNEE---------GPGEWLTLDS 101 (127)
T ss_pred CCCceEEEEEEhHHcccCCCC---------CCCccEecCh
Confidence 999999999999999977431 1234888873
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=130.63 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=84.4
Q ss_pred CCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCCceeEEEEEechhhcc
Q 020960 21 SLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLA 100 (319)
Q Consensus 21 ~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~ 100 (319)
..|++||||++.+++....+|+++++ +.||+|||+|.|.|.+.. ...|.|+|+|++. + +|++||++.|+|+++..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~--~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDRR--KSRVTVVVKDDRD-R-HDPVLGSVSISLNDLID 83 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCcC--CCEEEEEEEECCC-C-CCCeEEEEEecHHHHHh
Confidence 35789999999997666789999765 899999999999997642 4779999999996 5 99999999999999976
Q ss_pred cccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeec
Q 020960 101 KYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 101 ~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~ 142 (319)
.... ...||.|.. +++|+|+++++|.+.
T Consensus 84 ~~~~----------~~~w~~L~~----~~~G~i~~~~~~~p~ 111 (111)
T cd04052 84 ATSV----------GQQWFPLSG----NGQGRIRISALWKPV 111 (111)
T ss_pred hhhc----------cceeEECCC----CCCCEEEEEEEEecC
Confidence 4321 124888863 578999999999863
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-17 Score=142.89 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=83.1
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCeeeEEEEEEeCC-CCCCcceEEEEEE
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWID----PNNKYCTKIDASGKENPVWRTKFAAVVDD-SNFQDAALHVEVY 76 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld----~~~k~kTkV~k~gg~NPvWNEtF~f~V~~-~~lq~~~L~VeV~ 76 (319)
.++.|+|+|++|++|+..+..+..||||+|.+. ...++||+|+++ +.||+|||+|.|.+.. ..+....|.|+||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 457899999999999998877889999999984 236789999875 8999999999998532 2233468999999
Q ss_pred ecCCCCCCCceeEEEEEechhhcccc
Q 020960 77 SREPIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
|++. +.+|++||++.|+|+++....
T Consensus 104 d~d~-~~~d~~lG~v~i~l~~~~~~~ 128 (162)
T cd04020 104 DHDK-LSSNDFLGGVRLGLGTGKSYG 128 (162)
T ss_pred eCCC-CCCCceEEEEEEeCCccccCC
Confidence 9987 678999999999999987653
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=131.95 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=68.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC--
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE-- 79 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~-- 79 (319)
|+|+|++|++|+. ..||||++.+++ ..++||+++++ ++||+|||+|.|.|.. ...|+|.|||++
T Consensus 1 L~V~V~~A~~L~~-----~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFKQ-----SANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCCC-----CCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC----CCEEEEEEEEcccc
Confidence 6899999999974 389999999975 25799999975 9999999999999975 478999999973
Q ss_pred ----CCCCCCceeEEEEEech
Q 020960 80 ----PIFLRERLLGTATIALK 96 (319)
Q Consensus 80 ----~~~~kDklIG~a~IpL~ 96 (319)
....+|++||++.|.|+
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred cccccccCcccEEEEEEEEEC
Confidence 11478999988888775
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=135.23 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=87.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC---CCeEEeeecCCCCCCCeeeEEEEEEeCCCC-------------CCcc
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDP---NNKYCTKIDASGKENPVWRTKFAAVVDDSN-------------FQDA 69 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~---~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~-------------lq~~ 69 (319)
|+|+|++|++|+.. ..+..||||++.+.. ..+++|+++++ +.||+|||+|.|.+.... ++..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence 68999999999987 668899999999974 57889999875 899999999999987641 2356
Q ss_pred eEEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCC
Q 020960 70 ALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN 125 (319)
Q Consensus 70 ~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~ 125 (319)
.|.|+|||++. +.++++||++.|+|+++...... ..||.|..+.
T Consensus 79 ~l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~~~-----------~~W~~L~~~~ 122 (137)
T cd08675 79 ELRVELWHASM-VSGDDFLGEVRIPLQGLQQAGSH-----------QAWYFLQPRE 122 (137)
T ss_pred EEEEEEEcCCc-CcCCcEEEEEEEehhhccCCCcc-----------cceEecCCcC
Confidence 89999999987 57999999999999999854321 3489998633
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=139.07 Aligned_cols=110 Identities=12% Similarity=0.047 Sum_probs=86.0
Q ss_pred EEEEEEEEecCCCCCCCCC--------------CCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcce
Q 020960 5 WVEVCLISARGLRRSSSLW--------------KLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAA 70 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~g--------------k~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~ 70 (319)
+|.|+|++|++|...+..+ .+||||+|.+.+ ++.||+++++ +.||+|||+|.|.+..... ...
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~-~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-QKVKTSVKKN-SYNPEWNEQIVFPEMFPPL-CER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-EeeecceEcC-CCCCCcceEEEEEeeCCCc-CCE
Confidence 4899999999999887443 589999999965 4679999875 8999999999999754322 468
Q ss_pred EEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeE
Q 020960 71 LHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLR 122 (319)
Q Consensus 71 L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lr 122 (319)
|.|+|||++. +.+|++||++.|+|.++.......- .......|+.|-
T Consensus 78 l~~~v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~----lp~~~p~W~~ly 124 (151)
T cd04018 78 IKIQIRDWDR-VGNDDVIGTHFIDLSKISNSGDEGF----LPTFGPSFVNLY 124 (151)
T ss_pred EEEEEEECCC-CCCCCEEEEEEEeHHHhccCCcccc----CCccCceEEEee
Confidence 9999999997 6799999999999999987643210 001223588886
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-16 Score=134.09 Aligned_cols=119 Identities=14% Similarity=0.195 Sum_probs=94.5
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC-
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF- 82 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~- 82 (319)
..|.|.|++|++|... -++||++.+++...+||+++++ +.||.|||.|.|.+... ...|.|.||.++..+
T Consensus 11 ~sL~v~V~EAk~Lp~~-----~~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~---~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 11 NSLKLWIIEAKGLPPK-----KRYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPP---VSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEccCCCCc-----CCceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCc---ccEEEEEEEEccCccc
Confidence 5799999999999764 3899999998877789999865 89999999999986654 367999998654322
Q ss_pred --CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCc----------cceEEEEEEEEeecC
Q 020960 83 --LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNK----------PQGFIDVSVCISEER 143 (319)
Q Consensus 83 --~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgK----------p~G~L~lsL~f~~~~ 143 (319)
.+|.+||++.|++.++..+... ..||.|.. .+++ ..+.|+|.++|.+..
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~~~~v-----------e~Wfpl~~-~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSSRQFV-----------EKWYPVST-PKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred cccCCcEEEEEEEEHHHhcCCCcc-----------cEEEEeec-CCCCCccccccccCCCCEEEEEEEEEEee
Confidence 2689999999999999964321 35999986 3333 347999999998764
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=136.80 Aligned_cols=93 Identities=18% Similarity=0.173 Sum_probs=79.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
...|.|+|++|++|...+..+..||||++.+.+. .++||+|+++ +.||+|||+|.|.|....++...|.|+|||.
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 4679999999999998877788999999999542 3668998875 8999999999999977556678999999999
Q ss_pred CCCCCCCceeEEEEEechh
Q 020960 79 EPIFLRERLLGTATIALKE 97 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~d 97 (319)
+. ++++++||++.|....
T Consensus 93 d~-~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 93 TE-DGKTPNVGHVIIGPAA 110 (136)
T ss_pred CC-CCCCCeeEEEEECCCC
Confidence 87 7899999999997653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=130.82 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=90.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE 79 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~ 79 (319)
+.|+|+|++|++|+..+..+..||||+|.+.+ ..++||+++++ +.||+|||+|.|.+..... ...|.|+|||++
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~-~~~l~v~v~d~~ 90 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADK-DRRLSIEVWDWD 90 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhc-CCEEEEEEEECC
Confidence 67999999999999887778899999999953 36789999875 8999999999999876422 468999999988
Q ss_pred CCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCC
Q 020960 80 PIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSN 127 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sg 127 (319)
. +.+|++||++.++|+++... .. ..||.|.+.++|
T Consensus 91 ~-~~~~~~iG~~~~~l~~l~~~-~~-----------~~w~~L~~~~~~ 125 (131)
T cd04026 91 R-TTRNDFMGSLSFGVSELIKM-PV-----------DGWYKLLNQEEG 125 (131)
T ss_pred C-CCCcceeEEEEEeHHHhCcC-cc-----------CceEECcCcccc
Confidence 6 67999999999999999865 11 249999864444
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=136.92 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=79.6
Q ss_pred ceEEEEEEEEecCCCCCCC--CCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEE
Q 020960 3 KIWVEVCLISARGLRRSSS--LWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVY 76 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~--~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~ 76 (319)
.+.|.|+|++|++|...+. .+..||||+|.+.+. .++||+++++ +.||+|||+|.|.|....++...|.|+||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 5679999999999998762 344899999999643 4679999875 99999999999999876566788999999
Q ss_pred ecCCCCCCCceeEEEEEechh
Q 020960 77 SREPIFLRERLLGTATIALKE 97 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~d 97 (319)
|.+. +++|++||++.+.+..
T Consensus 93 d~d~-~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQDS-PGQSLPLGRCSLGLHT 112 (138)
T ss_pred eCCC-CcCcceeceEEecCcC
Confidence 9987 7899999999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=132.50 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=80.0
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|.|+|++|++|...+..+..||||+|.+.+ ..++||+++++ +.||+|||+|.|.+....+....|.|+|||.
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 468999999999999988888899999999953 24679999874 9999999999999876434357899999999
Q ss_pred CCCCCCCceeEEEEEechh
Q 020960 79 EPIFLRERLLGTATIALKE 97 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~d 97 (319)
+. ..+|++||++.|+|.+
T Consensus 91 d~-~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 91 DI-GKSNDYIGGLQLGINA 108 (133)
T ss_pred CC-CCCccEEEEEEEecCC
Confidence 86 6789999999999975
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=133.80 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=76.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..+..||||++.+.+. .++||+++++ +.||+|||+|.|.+....++...|.|+|||+
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 5789999999999999888889999999998432 4578999875 9999999999999965434446799999999
Q ss_pred CCCCCCCceeEEEEEec
Q 020960 79 EPIFLRERLLGTATIAL 95 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL 95 (319)
+. ..+|++||++.|..
T Consensus 92 d~-~~~~~~iG~~~l~~ 107 (135)
T cd08410 92 NV-KSSNDFIGRIVIGQ 107 (135)
T ss_pred CC-CCCCcEEEEEEEcC
Confidence 87 68999999988665
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-16 Score=134.76 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=81.0
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC-----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN-----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~-----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
.+.|.|+|++|++|...+..+..||||++.+.+. .++||++++ ++.||+|||+|.|.|....+++..|.|+||+
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRR-GQPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeec-CCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 5789999999999999887788999999999532 357999987 4899999999999998755556899999999
Q ss_pred cCCCCCCCceeEEEEEechhh
Q 020960 78 REPIFLRERLLGTATIALKEF 98 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL 98 (319)
.++ +.++++||++.+.+...
T Consensus 93 ~~~-~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 93 KRK-MKRKEMIGWFSLGLNSS 112 (138)
T ss_pred CCC-CCCCcEEEEEEECCcCC
Confidence 987 78999999999988643
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=132.65 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=80.0
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
...|.|+|++|++|...+..+..||||++.+.+. .+.||+|+++ +.||+|||+|.|.+....++...|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 4689999999999999888889999999999532 3568888874 8999999999999975434456799999999
Q ss_pred CCCCCCCceeEEEEEechh
Q 020960 79 EPIFLRERLLGTATIALKE 97 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~d 97 (319)
+. +.++++||++.+++.+
T Consensus 93 d~-~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 93 DR-VTKNEVIGRLVLGPKA 110 (136)
T ss_pred CC-CCCCccEEEEEECCcC
Confidence 87 6899999999999988
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=133.99 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=80.6
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
...|+|+|++|++|...+ .+..||||+|.+.+. .++||++++ ++.||+|||+|.|.|....++...|.|+||+.
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~ 91 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQLDTASLSLSVMQS 91 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEe-CCCCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence 467999999999999887 778999999999643 467899876 58999999999999976555568899999999
Q ss_pred CCCCCCCceeEEEEEechhhcc
Q 020960 79 EPIFLRERLLGTATIALKEFLA 100 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~ 100 (319)
+. ..++++||++.|....+..
T Consensus 92 ~~-~~~~~~lG~v~ig~~~~~~ 112 (137)
T cd08409 92 GG-VRKSKLLGRVVLGPFMYAR 112 (137)
T ss_pred CC-CCCcceEEEEEECCcccCC
Confidence 87 6899999999999665543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-16 Score=129.97 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=81.4
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
+.+.|+|+|++|++|+..+..+..||||++.+.+. .+++|+++++ +.||+|||+|.|.+....++...|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 46789999999999998877788999999999643 3668998874 899999999999997653445789999999
Q ss_pred cCCCCCCCceeEEEEEechh
Q 020960 78 REPIFLRERLLGTATIALKE 97 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~d 97 (319)
.+. +.++++||++.|+|++
T Consensus 91 ~~~-~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 91 KDS-VGRNEVIGQVVLGPDS 109 (134)
T ss_pred cCC-CCCCceeEEEEECCCC
Confidence 987 5899999999999999
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=132.46 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=79.3
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP--N--NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~--~--~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..+..||||+|.+.+ . .+++|++++ ++.||+|||+|.|.+....++...|.|+|||+
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-RTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeecccee-CCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 468999999999999888888899999999953 1 466888876 48999999999999875434346899999999
Q ss_pred CCCCCCCceeEEEEEechhh
Q 020960 79 EPIFLRERLLGTATIALKEF 98 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL 98 (319)
+. +.+|++||++.|++...
T Consensus 93 ~~-~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 93 DR-IGKNDPIGKVVLGCNAT 111 (136)
T ss_pred CC-CCCCceeEEEEECCccC
Confidence 87 68999999999999763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-16 Score=132.29 Aligned_cols=94 Identities=20% Similarity=0.254 Sum_probs=79.6
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..+..||||+|.+.+ ..++||+++++ +.||+|||+|.|.+....++...|.|+|||.
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 468999999999999888788999999999842 24678999875 8999999999999864323346899999999
Q ss_pred CCCCCCCceeEEEEEechhh
Q 020960 79 EPIFLRERLLGTATIALKEF 98 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL 98 (319)
+. +.+|++||++.|++.+.
T Consensus 93 ~~-~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 DR-LSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CC-CCCCcEeEEEEECCccC
Confidence 87 68899999999999886
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=131.62 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=78.8
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP--N--NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~--~--~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
..+.|+|+|++|++|+..+..+..||||+|.+.. . .++||++++ ++.||+|||+|.|.+....++...|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKK-NTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCccc-CCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 4578999999999999998889999999999842 1 367888876 5899999999999986543444679999999
Q ss_pred cCCCCCCCceeEEEEEech
Q 020960 78 REPIFLRERLLGTATIALK 96 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~ 96 (319)
++. +.+|++||++.|++.
T Consensus 91 ~~~-~~~~~~IG~~~l~~~ 108 (134)
T cd08403 91 YDR-VGHNELIGVCRVGPN 108 (134)
T ss_pred CCC-CCCCceeEEEEECCC
Confidence 987 688999999999976
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=127.97 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=78.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCC-CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPN-NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~-~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
.|+|+|++|++|+..+..++.||||++.+.+. .+.||+++++ +.||+|||+|.|.+... +...|.|+|||++. +.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~--~~~~L~~~V~d~d~-~~ 76 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLP--GNSILKISVMDYDL-LG 76 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCC--CCCEEEEEEEECCC-CC
Confidence 48999999999999888889999999999654 3357777765 89999999999998643 24789999999987 67
Q ss_pred CCceeEEEEEechhhcc
Q 020960 84 RERLLGTATIALKEFLA 100 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~ 100 (319)
+|++||++.|+|++..-
T Consensus 77 ~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 77 SDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCceeEEEEEeeccccc
Confidence 99999999999998874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-16 Score=127.12 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=81.6
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEE-eCCCCCCcceEEEEEE
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAV-VDDSNFQDAALHVEVY 76 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~-V~~~~lq~~~L~VeV~ 76 (319)
....|+|+|++|++|...+..+..||||++.+.+ ..++||+++++ +.||+|||+|.|. +....+....|.|+||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 3578999999999999888778899999999853 24789999875 8999999999996 4332233468999999
Q ss_pred ecCCCCCCCceeEEEEEechhhcccc
Q 020960 77 SREPIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
|++. + ++++||++.++|++|..+.
T Consensus 92 d~~~-~-~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 92 DEDR-F-GNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred EcCC-c-CCeeEEEEEEEcccCCCCc
Confidence 9986 5 8999999999999999654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=124.22 Aligned_cols=91 Identities=24% Similarity=0.230 Sum_probs=76.5
Q ss_pred EEEEecCCCCCCCCCCCCcEEEEEECCCC------eEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCC--
Q 020960 9 CLISARGLRRSSSLWKLQWFAVGWIDPNN------KYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREP-- 80 (319)
Q Consensus 9 tViSAr~Lk~~d~~gk~DPYV~v~ld~~~------k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~-- 80 (319)
-.++|++|...+.++++||||+|.+.+.. ++||+++++ +.||+|||+|.|.+... +...|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~--~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFE--EVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeE--eeeEEEEEEEEecCCc
Confidence 45899999998888999999999997543 589999875 89999999999986532 14679999999884
Q ss_pred -CCCCCceeEEEEEechhhcccc
Q 020960 81 -IFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 81 -~~~kDklIG~a~IpL~dL~~~~ 102 (319)
.+.+|++||++.++|++|....
T Consensus 82 ~~~~~~d~iG~~~i~l~~l~~~~ 104 (120)
T cd04048 82 KDLSDHDFLGEAECTLGEIVSSP 104 (120)
T ss_pred CCCCCCcEEEEEEEEHHHHhcCC
Confidence 1479999999999999999754
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=131.50 Aligned_cols=91 Identities=24% Similarity=0.406 Sum_probs=78.1
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----------------------------CeEEeeecCCCCCCCee
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----------------------------NKYCTKIDASGKENPVW 53 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----------------------------~k~kTkV~k~gg~NPvW 53 (319)
....|+|+|++|++|...+..+.+||||+|.+.+. ..++|+++++ +.||+|
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W 104 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNPVW 104 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCCcc
Confidence 46789999999999999988899999999998532 2478998875 899999
Q ss_pred eEEEEEEeCCCCCCcceEEEEEEecCCCCCCCceeEEEEEechhhcc
Q 020960 54 RTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLA 100 (319)
Q Consensus 54 NEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~ 100 (319)
||+|.|.+... ....|.|+|||++ |++||++.++|+++..
T Consensus 105 nE~F~f~v~~~--~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~ 144 (153)
T cd08676 105 NETFRFEVEDV--SNDQLHLDIWDHD-----DDFLGCVNIPLKDLPS 144 (153)
T ss_pred ccEEEEEeccC--CCCEEEEEEEecC-----CCeEEEEEEEHHHhCC
Confidence 99999999753 2478999999975 7999999999999993
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-16 Score=174.05 Aligned_cols=119 Identities=19% Similarity=0.298 Sum_probs=100.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
+.|.|+|++|++|+ +.++++||||++.+....++||||+++ +.||+|||.|+|.++++.. ..+|+|+|||++. |
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~-~~~l~iev~d~d~-f- 2053 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPPK-GQKLHISCKSKNT-F- 2053 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCCC-CCceEEEEEecCc-c-
Confidence 68999999999998 457899999999997666789999986 8999999999999887522 4679999999996 5
Q ss_pred CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceE---EEEEEEEee
Q 020960 84 RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGF---IDVSVCISE 141 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~---L~lsL~f~~ 141 (319)
+++.||.+.|+|.++..+...+ .||.|.+ +|+..|. |++.++|..
T Consensus 2054 ~kd~~G~~~i~l~~vv~~~~~~-----------~~~~L~~--~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 GKSSLGKVTIQIDRVVMEGTYS-----------GEYSLNP--ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCCCceEEEEHHHHhcCceee-----------eeeecCc--ccccCCCcceEEEEEEecC
Confidence 5558999999999999876543 3899984 6677787 999998864
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-15 Score=111.39 Aligned_cols=83 Identities=29% Similarity=0.474 Sum_probs=71.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCCC--eEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNN--KYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~--k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
|+|+|++|++|...+..+..||||++.+.+.. +++|+++++ +.+|.|||+|.|.+.... ...|.|+||+++. +.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~--~~~l~~~V~~~~~-~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPD--LDSLSFEVWDKDS-FG 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGC--GTEEEEEEEEETS-SS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeeccc--ccceEEEEEECCC-CC
Confidence 79999999999987777889999999997654 489999875 799999999999986643 3559999999997 67
Q ss_pred CCceeEEEE
Q 020960 84 RERLLGTAT 92 (319)
Q Consensus 84 kDklIG~a~ 92 (319)
+|++||+++
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 799999985
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-15 Score=146.70 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=105.0
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC--CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN--NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREP 80 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~--~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~ 80 (319)
...|.|+|+.|++|...+..+..||||++++.++ .+.+|+|+++ ++||+|||+|.|.|....++...|++.|||.++
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 4689999999999999885567999999999654 6889999874 999999999999987655668999999999998
Q ss_pred CCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC--CCCccceEEEEEEEEeec
Q 020960 81 IFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK--NSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~--~sgKp~G~L~lsL~f~~~ 142 (319)
|.++++||++.++|..+..... ...|+.|... .+.+..|+|.|+|++.+.
T Consensus 245 -fsr~~~iGev~~~l~~~~~~~~-----------~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 245 -FSRHDFIGEVILPLGEVDLLST-----------TLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred -cccccEEEEEEecCcccccccc-----------ceeeeccccccCCcccccceEEEEEEeecC
Confidence 8999999999999988877543 1346777642 122334899999999987
|
|
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-15 Score=126.49 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=77.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCC-CCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP--N--NKYCTKIDASGK-ENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~--~--~k~kTkV~k~gg-~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
.+.|.|+|++|++|+..+.....||||+|++.. + .|+||+++++ + .||+|||+|.|.|... +....|.|+|||
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~-~~~v~l~v~v~d 90 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQ-EHGIQFLIKLYS 90 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCch-hheeEEEEEEEe
Confidence 567999999999999865445679999999942 2 5789999875 6 5799999999999875 335789999999
Q ss_pred cCCCCCCCceeEEEEEechhh
Q 020960 78 REPIFLRERLLGTATIALKEF 98 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL 98 (319)
+++ ..++++||++.+..+..
T Consensus 91 ~~~-~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 91 RSS-VRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCC-CcCCceEEEEEECCccC
Confidence 987 68999999999999763
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=115.51 Aligned_cols=92 Identities=22% Similarity=0.263 Sum_probs=75.4
Q ss_pred EEEEEEecCCCCCCCCCCCCcEEEEEECCC-----CeEEeeecCCCCCCCeeeEEEEEEeCCCC--CCcceEEEEEEecC
Q 020960 7 EVCLISARGLRRSSSLWKLQWFAVGWIDPN-----NKYCTKIDASGKENPVWRTKFAAVVDDSN--FQDAALHVEVYSRE 79 (319)
Q Consensus 7 eVtViSAr~Lk~~d~~gk~DPYV~v~ld~~-----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~--lq~~~L~VeV~d~~ 79 (319)
.+-.++|++|+..+.++++||||+|.+.+. .++||+++++ +.||+|| +|.|.+.... .....|.|+|||++
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 345679999999988899999999998643 3689999885 8999999 6888764311 11478999999998
Q ss_pred CCCCCCceeEEEEEechhhccc
Q 020960 80 PIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~ 101 (319)
. +++|++||++.++|++|...
T Consensus 81 ~-~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 S-SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred C-CCCCcEEEEEEEEHHHHhcC
Confidence 7 68999999999999999944
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-15 Score=148.38 Aligned_cols=106 Identities=22% Similarity=0.268 Sum_probs=92.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
...|.|+|.+|++|-.+|..+-+||||++.+-+ ..|+||++++. ++||+|||+|+|.+...+. +..|.|||||+
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~Dk-drRlsiEvWDW 256 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDK-DRRLSIEVWDW 256 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccc-cceeEEEEecc
Confidence 457999999999999999999999999999943 37889999986 9999999999999987643 57899999999
Q ss_pred CCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 79 EPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
++ ..+++++|...+.+++|...... .||.|+.
T Consensus 257 Dr-TsRNDFMGslSFgisEl~K~p~~------------GWyKlLs 288 (683)
T KOG0696|consen 257 DR-TSRNDFMGSLSFGISELQKAPVD------------GWYKLLS 288 (683)
T ss_pred cc-cccccccceecccHHHHhhcchh------------hHHHHhh
Confidence 98 69999999999999999987642 3888885
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.4e-13 Score=140.02 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=116.4
Q ss_pred eEEEEEEEEecCCCCCC----------------CC--CCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCC
Q 020960 4 IWVEVCLISARGLRRSS----------------SL--WKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN 65 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d----------------~~--gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~ 65 (319)
+.|+|+|.+|++|++.+ .. +.+|+||+|.+.+....||+|+++...||+|||.|.+.|...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 67999999999998621 01 246999999999888999999986567999999999999886
Q ss_pred CCcceEEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCcc-c--eEEEEEEEEeec
Q 020960 66 FQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKP-Q--GFIDVSVCISEE 142 (319)
Q Consensus 66 lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp-~--G~L~lsL~f~~~ 142 (319)
...|.|+|+|.+ ..+..+||++.||+.+|+.+...+ .|+.+.. .++|+ + -.|+|+++|.+.
T Consensus 87 --~~~v~f~vkd~~--~~g~~~ig~~~~p~~~~~~g~~i~-----------~~~~~~~-~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 --ASNIIFTVKDDN--PIGATLIGRAYIPVEEILDGEEVD-----------RWVEILD-NDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred --cceEEEEEecCC--ccCceEEEEEEEEHHHhcCCCccc-----------cEEeccC-CCCCcCCCCCEEEEEEEEEEc
Confidence 478999999988 468889999999999999875432 3889986 56665 2 399999999996
Q ss_pred CCCCCCCCCCCCCccCCCCCCceeeecCCCCCCCCCCCC
Q 020960 143 REEPSSYPGNEGGIMLADHSNNFMLPTEGAPGQNYPTQR 181 (319)
Q Consensus 143 ~~~~~~~~G~~~~~~~pd~~~gi~~~~~~~~~~~yp~~~ 181 (319)
..++. +..++.+ -...|+|..-||+..
T Consensus 151 ~~~~~-~~~gv~~-----------~~~~gvp~t~f~~r~ 177 (808)
T PLN02270 151 TKDRN-WGRGIRS-----------AKFPGVPYTFFSQRQ 177 (808)
T ss_pred ccCcc-hhcccCC-----------cCcCCCCCcccccCC
Confidence 55444 4444431 133577888888653
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-13 Score=100.72 Aligned_cols=90 Identities=30% Similarity=0.451 Sum_probs=77.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCC
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRE 85 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kD 85 (319)
|.|.|++|++|.........++||++.+.+...++|+++++ +.||.|||.|.|.+... ....|.|+||+.+. ..++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~-~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~-~~~~ 76 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKN-TLNPVWNETFEFPVLDP--ESDTLTVEVWDKDR-FSKD 76 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCC-CCCCcccceEEEEccCC--CCCEEEEEEEecCC-CCCC
Confidence 57999999999876556679999999998657889998764 78999999999999762 14789999999987 5679
Q ss_pred ceeEEEEEechhhc
Q 020960 86 RLLGTATIALKEFL 99 (319)
Q Consensus 86 klIG~a~IpL~dL~ 99 (319)
++||.+.+++.++.
T Consensus 77 ~~ig~~~~~l~~l~ 90 (102)
T cd00030 77 DFLGEVEIPLSELL 90 (102)
T ss_pred ceeEEEEEeHHHhh
Confidence 99999999999998
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.7e-13 Score=101.15 Aligned_cols=95 Identities=31% Similarity=0.408 Sum_probs=80.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCC--CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDPN--NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~--~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
.|+|.|++|++|.........+|||++.+... ..++|+++++ +.||.|||+|.|.+.... ...|.|+||++.. .
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~-~ 76 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPE--LAELEIEVYDKDR-F 76 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcc--cCEEEEEEEecCC-c
Confidence 37899999999998765567899999999765 5789998775 679999999999997642 4789999999986 4
Q ss_pred CCCceeEEEEEechhhccccc
Q 020960 83 LRERLLGTATIALKEFLAKYS 103 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~ 103 (319)
.++.+||.+.++|.++..+..
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred cCCceeEEEEEEHHHcccCcc
Confidence 579999999999999987643
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=133.33 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=89.1
Q ss_pred ceEEEEEEEEecCCC-----CCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEE
Q 020960 3 KIWVEVCLISARGLR-----RSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHV 73 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk-----~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~V 73 (319)
..+|.|+|++|+++. ..+.....||||+|+|.+ ..++||+|. +++.||+|||+|.|.|..++ ...|+|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~-nNg~nPvWne~F~F~i~~PE--LAlLrf 484 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVK-NNEWKPTWGEEFTFPLTYPD--LALISF 484 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeC-CCCcCceecceeEEEEEccC--ceEEEE
Confidence 468999999999873 112335689999999964 246678764 56999999999999997764 377999
Q ss_pred EEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEE
Q 020960 74 EVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCI 139 (319)
Q Consensus 74 eV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f 139 (319)
+|+|++. ..+|++||++.+|++.|..+.. +.+|+. ++|++--...|-++|
T Consensus 485 ~V~D~D~-~~~ddfiGQ~~LPv~~Lr~GyR--------------~VpL~~-~~g~~l~~~~Ll~~f 534 (537)
T PLN02223 485 EVYDYEV-STADAFCGQTCLPVSELIEGIR--------------AVPLYD-ERGKACSSTMLLTRF 534 (537)
T ss_pred EEEecCC-CCCCcEEEEEecchHHhcCCce--------------eEeccC-CCcCCCCCceEEEEE
Confidence 9999986 5789999999999999998863 567875 455442223444444
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=134.88 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=95.6
Q ss_pred ceEEEEEEEEecCCCCC------CCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEE
Q 020960 3 KIWVEVCLISARGLRRS------SSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALH 72 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~------d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~ 72 (319)
...|.|+|++|++|... +.+...|+||+|++.+ ..++||+++++ +.||+|||+|.|.+...+ ...|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~PE--LAllr 545 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVPE--LALLR 545 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcCC--ccEEE
Confidence 36799999999997421 2223469999999964 36789999876 599999999999987653 36799
Q ss_pred EEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEe
Q 020960 73 VEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCIS 140 (319)
Q Consensus 73 VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~ 140 (319)
|+|+|++. ..+|++||++.+||+.|..+.. +..|+. .+|+..+.++|-|+|.
T Consensus 546 f~V~D~D~-~~~ddfiGq~~lPv~~Lr~GyR--------------~VpL~~-~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 546 IEVREYDM-SEKDDFGGQTCLPVSELRPGIR--------------SVPLHD-KKGEKLKNVRLLMRFI 597 (599)
T ss_pred EEEEecCC-CCCCCeEEEEEcchhHhcCCce--------------eEeCcC-CCCCCCCCEEEEEEEE
Confidence 99999876 5789999999999999998863 678875 6777777788888774
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-12 Score=107.77 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=79.6
Q ss_pred EEEEEEEEecCCCCCC--CCCC--CCcEEEEEECC--CCeEEeeecCCCCCC--CeeeEEEEEEeCC-------------
Q 020960 5 WVEVCLISARGLRRSS--SLWK--LQWFAVGWIDP--NNKYCTKIDASGKEN--PVWRTKFAAVVDD------------- 63 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d--~~gk--~DPYV~v~ld~--~~k~kTkV~k~gg~N--PvWNEtF~f~V~~------------- 63 (319)
.|+|.|.+|+++...+ ..++ .|+||++|+.+ ..+++|.|+.+ ++| |+||++|.|.+.-
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 3899999999965433 3453 89999999986 47899999975 888 9999999988765
Q ss_pred --------CCCCcceEEEEEEecCCCCCCCceeEEEEEechhhcccc
Q 020960 64 --------SNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 64 --------~~lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
..+....|+|+|||.+. +.+|++||+++++|..+.+..
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhccccc
Confidence 22335789999999997 789999999999999988764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-12 Score=131.35 Aligned_cols=120 Identities=19% Similarity=0.310 Sum_probs=96.5
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC-
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF- 82 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~- 82 (319)
..++++|+.|++|-..|.-|+.||||++.+ ++.|.+|+++. +.+||+|||+|.|.+.+. ++.+.|.|||++...
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv-~ktkrrtrti~-~~lnpvw~ekfhfechns---tdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQV-GKTKRRTRTIH-QELNPVWNEKFHFECHNS---TDRIKVRVWDEDNDLK 369 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEee-cccchhhHhhh-hccchhhhhheeeeecCC---CceeEEEEecCcccHH
Confidence 468999999999999998999999999999 57788999876 589999999999999887 688999999986421
Q ss_pred ---------CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEEEee
Q 020960 83 ---------LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVCISE 141 (319)
Q Consensus 83 ---------~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~f~~ 141 (319)
..|++||+..|-+..|...- -.||.|.+| .+.-..|.|++.|.+.=
T Consensus 370 sklrqkl~resddflgqtvievrtlsgem-------------dvwynlekrtdksavsgairlhisvei 425 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGEM-------------DVWYNLEKRTDKSAVSGAIRLHISVEI 425 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccch-------------hhhcchhhccchhhccceEEEEEEEEE
Confidence 36999999999988876432 249999864 23345777766666543
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=126.02 Aligned_cols=97 Identities=20% Similarity=0.163 Sum_probs=78.9
Q ss_pred ceEEEEEEEEecCCCC------CCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEE
Q 020960 3 KIWVEVCLISARGLRR------SSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALH 72 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~------~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~ 72 (319)
+.+|.|+|++++++.. .+.....||||+|+|.+ ..+++|+|.. ++.||+|||+|.|.|..++ ...|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~-n~~nP~Wneef~F~l~vPE--LAllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEY-DTWTPIWNKEFIFPLAVPE--LALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccC-CCCCCccCCeeEEEEEcCc--eeEEE
Confidence 3689999999998631 12234579999999964 3567899765 5899999999999987764 47899
Q ss_pred EEEEecCCCCCCCceeEEEEEechhhccccc
Q 020960 73 VEVYSREPIFLRERLLGTATIALKEFLAKYS 103 (319)
Q Consensus 73 VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~ 103 (319)
|+|+|++. ..+|++||++.+||..|..+..
T Consensus 545 f~V~d~d~-~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 545 VEVHEHDI-NEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EEEEECCC-CCCCCEEEEEEcchHHhhCccc
Confidence 99999885 5789999999999999999864
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.2e-11 Score=123.48 Aligned_cols=120 Identities=16% Similarity=0.183 Sum_probs=92.5
Q ss_pred eEEEEEEEEecCCCC---C---CCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCee-eEEEEEEeCCCCCCcceEE
Q 020960 4 IWVEVCLISARGLRR---S---SSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVW-RTKFAAVVDDSNFQDAALH 72 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~---~---d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvW-NEtF~f~V~~~~lq~~~L~ 72 (319)
..|.|+|++|++|.. . +.....|+||+|++.+ ..++||+++++ +.||+| ||+|.|.+...+ ...|+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pE--LA~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVPE--LALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcCc--eeEEE
Confidence 479999999998721 1 1233489999999964 25679999876 689999 999999987654 47899
Q ss_pred EEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCcc--ceEEEEEEEEeec
Q 020960 73 VEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKP--QGFIDVSVCISEE 142 (319)
Q Consensus 73 VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp--~G~L~lsL~f~~~ 142 (319)
|+|+|++. ..+|++||++.|||+.|..+.. ...|+. ..|+. ..+|-+.+.+.+.
T Consensus 508 f~V~D~d~-~~~d~figq~~lPv~~Lr~GYR--------------~VpL~~-~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 508 FKVQDYDN-DTQNDFAGQTCLPLPELKSGVR--------------AVRLHD-RAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEeCCC-CCCCCEEEEEEcchhHhhCCee--------------EEEccC-CCCCCCCCeEEEEEEEEcCc
Confidence 99999876 5789999999999999998763 567776 44433 4567777777654
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-11 Score=123.02 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=78.6
Q ss_pred ceEEEEEEEEecCCC----C--CCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEE
Q 020960 3 KIWVEVCLISARGLR----R--SSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALH 72 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk----~--~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~ 72 (319)
...|.|+|++++++. . .+.....||||+|+|.+ ..+++|+++++ +.||+|||+|.|.|..++ ...|+
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~Pe--LAllR 527 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVPE--LALLR 527 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcCc--eeEEE
Confidence 357999999999752 1 12234579999999963 36789999987 479999999999987653 47899
Q ss_pred EEEEecCCCCCCCceeEEEEEechhhccccc
Q 020960 73 VEVYSREPIFLRERLLGTATIALKEFLAKYS 103 (319)
Q Consensus 73 VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~ 103 (319)
|+|+|++. ..+|++||++.+||+.|..+..
T Consensus 528 f~V~d~D~-~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 528 LEVHEYDM-SEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred EEEEECCC-CCCCcEEEEEEcchhhhhCccc
Confidence 99999875 5789999999999999999864
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=133.05 Aligned_cols=125 Identities=22% Similarity=0.244 Sum_probs=99.6
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
.+.|+|.+++|++|+..+..+..||||++.+..+..+||+++|. ++||+|||.|.+.|.... .+.|+|.|+|++. .
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r~--~D~~~i~v~Dwd~-~ 1114 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNRV--KDVLTINVNDWDS-G 1114 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhc-cCCCCccccceEeeeccc--cceEEEEEeeccc-C
Confidence 46799999999999999998999999999998888999999986 999999999999998642 5789999999987 5
Q ss_pred CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeec
Q 020960 83 LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~ 142 (319)
.++++||++.|+|+.|..+..-+ ....|..+..+...|.++....|.+.
T Consensus 1115 ~knd~lg~~~idL~~l~~~~~~n-----------~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLEPGGTTN-----------SNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred CCccccccccccHhhcCcCCccc-----------eeeeccCcceEecccEeecceecchh
Confidence 89999999999999999875422 12233221122445666666666553
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-11 Score=100.62 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=75.9
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 6 VEVCLISARGLRRSS---SLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 6 LeVtViSAr~Lk~~d---~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
|+|+|.+||+|.... ..+++|+||++.++...++||++ +.||.|||+|.|.|+. ...+.|+|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk----~nEiel~VyDk~~-- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK----NNEEEVIVYDKGG-- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC----CcEEEEEEEeCCC--
Confidence 689999999999887 45678999999998888999987 3799999999999964 3789999999863
Q ss_pred CCCceeEEEEEechhhcccccC
Q 020960 83 LRERLLGTATIALKEFLAKYSK 104 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~ 104 (319)
....-||..-|.|++|...-..
T Consensus 71 ~~~~Pi~llW~~~sdi~Ee~Rr 92 (109)
T cd08689 71 DQPVPVGLLWLRLSDIAEEIRK 92 (109)
T ss_pred CeecceeeehhhHHHHHHHHHH
Confidence 4667799999999999876443
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-11 Score=123.46 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=92.7
Q ss_pred EEEEEEEEecCCCCC-CC--C-CCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEE
Q 020960 5 WVEVCLISARGLRRS-SS--L-WKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVY 76 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~-d~--~-gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~ 76 (319)
+|.|+|++++++... +. + .-.||||.|+|.+ ..+.+|+++++++-||+|+|+|+|.|..+++ ..|+|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL--AliRF~V~ 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL--ALIRFEVH 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce--eEEEEEEE
Confidence 799999999965432 21 2 3489999999964 3678999888889999999999999988754 78999999
Q ss_pred ecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCc--cceEEEEEEEEe
Q 020960 77 SREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNK--PQGFIDVSVCIS 140 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgK--p~G~L~lsL~f~ 140 (319)
|++. ..+|+++|+.++|+.+|..+.. ...|.. ..|+ ..-+|-|.|++.
T Consensus 695 d~d~-~~~ddF~GQ~tlP~~~L~~GyR--------------hVpL~~-~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 695 DYDY-IGKDDFIGQTTLPVSELRQGYR--------------HVPLLS-REGEALSSASLFVRIAIV 744 (746)
T ss_pred ecCC-CCcccccceeeccHHHhhCcee--------------eeeecC-CCCccccceeEEEEEEEe
Confidence 9997 5789999999999999999864 445664 2343 355666666654
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-11 Score=123.51 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=113.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
..|.|+|.+||+|...+..+..||||+|.+|....++|.++.. ++.|.|.|.|+|.|...| ..|.|=|||++ +.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F---~~l~fYv~D~d--~~ 78 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF---RYLSFYVWDRD--LK 78 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce---eeEEEEEeccc--cc
Confidence 4689999999999998888889999999999999999999875 999999999999998764 67999999999 68
Q ss_pred CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEEEeecCCCCCCCCCCC
Q 020960 84 RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVCISEEREEPSSYPGNE 153 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~f~~~~~~~~~~~G~~ 153 (319)
+|+.||.+.|.=.+|......+ .|+.|+.- .+...+|+|||++++.+......+..+..
T Consensus 79 ~D~~IGKvai~re~l~~~~~~d-----------~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L 138 (800)
T KOG2059|consen 79 RDDIIGKVAIKREDLHMYPGKD-----------TWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVL 138 (800)
T ss_pred cccccceeeeeHHHHhhCCCCc-----------cceeccccCCChhhceeEEEEEEeccccCCCcchhhhh
Confidence 9999999999999998765322 37777642 45678999999999998877666666555
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9e-11 Score=117.57 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=79.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|.|++|++|+..+..+-.|+||++++-. ..|+||.+.+ ++.||+|||+|.|.|....++...|.|+|||.
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~-~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKK-KTLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeeccc-CCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 478999999999999988878899999999942 2577888876 59999999999999987656667899999999
Q ss_pred CCCCCCCceeEEEEEechh
Q 020960 79 EPIFLRERLLGTATIALKE 97 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~d 97 (319)
+. +.++++||.+.+....
T Consensus 376 d~-~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 376 DT-LGSNDLIGRCILGSDS 393 (421)
T ss_pred cc-ccccceeeEEEecCCC
Confidence 98 6888899998887765
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.2e-10 Score=116.45 Aligned_cols=142 Identities=14% Similarity=0.188 Sum_probs=103.4
Q ss_pred eEEEEEEEEecCCCCC----CCCC-CCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 4 IWVEVCLISARGLRRS----SSLW-KLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~----d~~g-k~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
++|+|+|.+|+-+... +..+ ..||||+|.+++....|| ++ ..||+|||.|.+.|.... ...+.|+|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~-~~~p~w~e~f~i~~ah~~--~~~~~f~vk~- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SH-EYDRVWNQTFQILCAHPL--DSTITITLKT- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CC-CCCCccccceeEEeeeec--CCcEEEEEec-
Confidence 6899999999865442 1111 239999999988888888 33 569999999999998862 1469999977
Q ss_pred CCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCcc-ce-EEEEEEEEeecCCCCCCCCCCCCCc
Q 020960 79 EPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKP-QG-FIDVSVCISEEREEPSSYPGNEGGI 156 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp-~G-~L~lsL~f~~~~~~~~~~~G~~~~~ 156 (319)
+..+||++.||+.+|+.+... -..|+.|.. .++|+ +| .|+|+|+|.+....+. +..++.+
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~----------~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~-~~~g~~~- 144 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASF----------INGFFPLIM-ENGKPNPELKLRFMLWFRPAELEPT-WCKILEN- 144 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcc----------cceEEEccc-CCCCCCCCCEEEEEEEEEEhhhCcc-hhhcccC-
Confidence 358999999999999987431 124899986 56665 44 9999999999866654 3333321
Q ss_pred cCCCCCCceeeecCCCCCCCCCCC
Q 020960 157 MLADHSNNFMLPTEGAPGQNYPTQ 180 (319)
Q Consensus 157 ~~pd~~~gi~~~~~~~~~~~yp~~ 180 (319)
-...|+|.+-||+.
T Consensus 145 ----------~~~~gvp~~~f~~r 158 (758)
T PLN02352 145 ----------GSFQGLRNATFPQR 158 (758)
T ss_pred ----------CCcCCcCCcccccC
Confidence 12346788888843
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6e-09 Score=106.66 Aligned_cols=133 Identities=19% Similarity=0.229 Sum_probs=103.1
Q ss_pred ceEEEEEEEEecCCCCCCCCC-CCCcEEEEEECCCCeEEeeecCCCCCCCeee-EEEEEEeCCCCCCcceEEEEEEecCC
Q 020960 3 KIWVEVCLISARGLRRSSSLW-KLQWFAVGWIDPNNKYCTKIDASGKENPVWR-TKFAAVVDDSNFQDAALHVEVYSREP 80 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~g-k~DPYV~v~ld~~~k~kTkV~k~gg~NPvWN-EtF~f~V~~~~lq~~~L~VeV~d~~~ 80 (319)
-++|-|+|+.||+|..+|..+ ..|.||++.+ .+..+||.|..+ .+||.|| |-|.|.|++.++|++.|.|.|+|.+.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~-~n~t~ktdvf~k-slnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKF-ANTTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEe-cccceehhhhhh-hcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 468999999999999988765 4799999999 467889998875 8999999 46889999988999999999999998
Q ss_pred CCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEe
Q 020960 81 IFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCIS 140 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~ 140 (319)
...++.||.+.|+|+.|.-...-.. .-..+..-..|+.+...-.| .+|+|+|.+++.
T Consensus 80 -ysandaigkv~i~idpl~~e~aaqa-vhgkgtvisgw~pifdtihg-irgeinvivkvd 136 (1169)
T KOG1031|consen 80 -YSANDAIGKVNIDIDPLCLEEAAQA-VHGKGTVISGWFPIFDTIHG-IRGEINVIVKVD 136 (1169)
T ss_pred -cccccccceeeeccChHHHHhHHhh-hcCCceEEeeeeecceeccc-ccceeEEEEEEe
Confidence 6899999999999998875332100 00012333456776642234 789999988864
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.4e-09 Score=108.55 Aligned_cols=96 Identities=24% Similarity=0.278 Sum_probs=77.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeee-EEEEEEeCCCCCCcceEEEEEEec
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWR-TKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWN-EtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
..|.|.|+.||.|.... .+-..|||+|++-+ ..+++|+++.++|+||+|| |+|+|.|..+. -..|+|.|+++
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe--~A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE--FAFLRFVVYEE 1141 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc--eEEEEEEEecc
Confidence 57899999999998542 24467999999943 2455555555679999999 99999998764 37899999999
Q ss_pred CCCCCCCceeEEEEEechhhccccc
Q 020960 79 EPIFLRERLLGTATIALKEFLAKYS 103 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~~ 103 (319)
+= |....+||+|++|++.+..+..
T Consensus 1142 Dm-fs~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1142 DM-FSDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred cc-cCCcceeeeeecchhhhhccce
Confidence 84 6677899999999999998763
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.6e-09 Score=107.52 Aligned_cols=122 Identities=20% Similarity=0.338 Sum_probs=94.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCC------------------------------CeEEeeecCCCCCCCeeeE
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPN------------------------------NKYCTKIDASGKENPVWRT 55 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~------------------------------~k~kTkV~k~gg~NPvWNE 55 (319)
|.|.+..|++|-.++..|.+|||+...+-+. -.+-|.|.+ .++||+|||
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TLnPkW~E 194 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTLNPKWSE 194 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccCCcchhh
Confidence 4567788999999888889999998888431 123466765 499999999
Q ss_pred EEEEEeCCCCCCcceEEEEEEecCCC-----------------------------------CCCCceeEEEEEechhhcc
Q 020960 56 KFAAVVDDSNFQDAALHVEVYSREPI-----------------------------------FLRERLLGTATIALKEFLA 100 (319)
Q Consensus 56 tF~f~V~~~~lq~~~L~VeV~d~~~~-----------------------------------~~kDklIG~a~IpL~dL~~ 100 (319)
+|.|.|++- +++.+++.+||.++. ...|++||-+.|||.++-.
T Consensus 195 kF~F~IeDv--~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~ 272 (1103)
T KOG1328|consen 195 KFQFTIEDV--QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP 272 (1103)
T ss_pred heeeehhcc--ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence 999999863 478899999997641 0238999999999999987
Q ss_pred cccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEEEeec
Q 020960 101 KYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 101 ~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~f~~~ 142 (319)
..- .+ ||.|..| ..+|.+|.+++.|++..+
T Consensus 273 ~Gl----------d~--WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 273 DGL----------DQ--WFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred chH----------HH--HhccCcccccccccceEEEEEEEeee
Confidence 643 22 6666542 457899999999999854
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.6e-08 Score=101.61 Aligned_cols=95 Identities=21% Similarity=0.175 Sum_probs=80.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC------CeEEeeecCCCCCCCeeeEEEEEEeCCCCC--CcceEEEEE
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN------NKYCTKIDASGKENPVWRTKFAAVVDDSNF--QDAALHVEV 75 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~------~k~kTkV~k~gg~NPvWNEtF~f~V~~~~l--q~~~L~VeV 75 (319)
..|.|.|+.|++|-.-|..|-+||||+|++.++ ..++|+|++. ++||+++|+|+|.|..... +...|+|+|
T Consensus 947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEEEe
Confidence 467889999999998888899999999999765 4579999874 9999999999999976532 357899999
Q ss_pred EecCCCCCCCceeEEEEEechhhcc
Q 020960 76 YSREPIFLRERLLGTATIALKEFLA 100 (319)
Q Consensus 76 ~d~~~~~~kDklIG~a~IpL~dL~~ 100 (319)
+|.+- ...+++-|+|-+-|.++-.
T Consensus 1026 MDHD~-L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1026 MDHDY-LRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eccce-ecccccchHHHHhhCCCCC
Confidence 99996 6789999999888887764
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4e-07 Score=99.07 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=85.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEE-eCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAV-VDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~-V~~~~lq~~~L~VeV~d 77 (319)
.++|.|-|..||+|.--......||||+.++.++ .|.||||+++ +.||++||.+... ..-..++...|.++||+
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 5789999999999965444456899999999653 6789999986 9999999988765 32222445789999999
Q ss_pred cCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeE
Q 020960 78 REPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLR 122 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lr 122 (319)
... +..+.++|.+.|+|.++--... ...||+|.
T Consensus 1602 ~~~-~~en~~lg~v~i~L~~~~l~kE-----------~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGG-LLENVFLGGVNIPLLKVDLLKE-----------SVGWYNLG 1634 (1639)
T ss_pred ccc-eeeeeeeeeeecchhhcchhhh-----------hcceeecc
Confidence 887 7899999999999998875432 24699985
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-06 Score=90.65 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=79.7
Q ss_pred CCCCcEEEEEECCC---CeEEeeecCCCCCCCeeeEEEEEEeCCCC-------------CCcceEEEEEEecCCCCCCCc
Q 020960 23 WKLQWFAVGWIDPN---NKYCTKIDASGKENPVWRTKFAAVVDDSN-------------FQDAALHVEVYSREPIFLRER 86 (319)
Q Consensus 23 gk~DPYV~v~ld~~---~k~kTkV~k~gg~NPvWNEtF~f~V~~~~-------------lq~~~L~VeV~d~~~~~~kDk 86 (319)
+.+||||+|..-+. ...+|++.+. +.+|.|||.|+|.+.... .+...|+|++|++...+.++.
T Consensus 149 ~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 149 GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 45999999988543 2358888776 899999999999997541 013578899998544356799
Q ss_pred eeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCcc------ceEEEEEEEEeec
Q 020960 87 LLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKP------QGFIDVSVCISEE 142 (319)
Q Consensus 87 lIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp------~G~L~lsL~f~~~ 142 (319)
++|+++|++..+...... ..||.|+.+++|+. -|.+.+.+++...
T Consensus 228 FlGevrv~v~~~~~~s~p-----------~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 228 FLGEVRVPVDVLRQKSSP-----------AAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred hceeEEeehhhhhhccCc-----------cceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 999999999999854332 34899986555432 4888888888653
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4e-07 Score=88.24 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=94.9
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEE-eCCCCCCcceEEEEEE
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAV-VDDSNFQDAALHVEVY 76 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~-V~~~~lq~~~L~VeV~ 76 (319)
+++.+..+|..|++|+.++..+..|+|++..+.+. .+.+|++.. +++||.|||+.... |.+.......+++.|+
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~~~K~~Rk~vc 169 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDTHLKVLRKVVC 169 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchhhhhhhheeec
Confidence 46789999999999999998899999999999753 456777875 59999999987654 2222334567888888
Q ss_pred ecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeE--e--CCCCccceEEEEEEEEeec
Q 020960 77 SREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLR--K--KNSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lr--r--~~sgKp~G~L~lsL~f~~~ 142 (319)
+... +..+.++|+..++|+.|...+... ..-++...|- + +..-..+|+|.++|.+...
T Consensus 170 dn~~-~~~~~sqGq~r~~lkKl~p~q~k~-------f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~ 231 (362)
T KOG1013|consen 170 DNDK-KTHNESQGQSRVSLKKLKPLQRKS-------FNICLEKSLPSERADRDEDEERGAILISLAYSST 231 (362)
T ss_pred cCcc-cccccCcccchhhhhccChhhcch-------hhhhhhccCCcccccccchhhccceeeeeccCcC
Confidence 8876 788999999999999998876532 1122222332 1 0122467888888776543
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-06 Score=85.64 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=95.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEE----CCCCeEEeeecCCCCCCCeeeEEEEEEeCCCC---------CCcce
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWI----DPNNKYCTKIDASGKENPVWRTKFAAVVDDSN---------FQDAA 70 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~l----d~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~---------lq~~~ 70 (319)
..|++.|++++++.....-...|.||.+++ |...+.||+|+++ +..|.++|.|.+.+.... +.+.-
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 457788888888765543345789999888 2346889999985 999999999999997621 12457
Q ss_pred EEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCc-cceEEEEEEEEeecCC
Q 020960 71 LHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNK-PQGFIDVSVCISEERE 144 (319)
Q Consensus 71 L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgK-p~G~L~lsL~f~~~~~ 144 (319)
+.||||++...+..|+++|++.|.|.-|...... +..|.|.+ .-| ..|.|.+.|++.....
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei-----------~e~~~l~D--GRK~vGGkLevKvRiR~Pi~ 507 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEI-----------CEYLPLKD--GRKAVGGKLEVKVRIRQPIG 507 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccch-----------hhceeccc--cccccCCeeEEEEEEecccc
Confidence 8999999987667899999999999999876542 23677864 222 3689999999876543
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.7e-06 Score=72.38 Aligned_cols=97 Identities=22% Similarity=0.279 Sum_probs=73.9
Q ss_pred EEEEEEEecCCCCC-------C--C--C--CCCCcEEEEEE---CCCCeEEeeecCCCCCCCeeeEEEEEEeC-------
Q 020960 6 VEVCLISARGLRRS-------S--S--L--WKLQWFAVGWI---DPNNKYCTKIDASGKENPVWRTKFAAVVD------- 62 (319)
Q Consensus 6 LeVtViSAr~Lk~~-------d--~--~--gk~DPYV~v~l---d~~~k~kTkV~k~gg~NPvWNEtF~f~V~------- 62 (319)
|.|.|+.|-+|+.. + . . -..++||++.+ ..+++.+|+++. ++..|.||..|.|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVA-rSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVA-RSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchh-hhcCCCccceEEEecccEEEcCC
Confidence 57889999999742 1 1 0 12799999996 245677898876 4899999999999987
Q ss_pred -CC-----CCCcceEEEEEEecCCC---------CCCCceeEEEEEechhhccccc
Q 020960 63 -DS-----NFQDAALHVEVYSREPI---------FLRERLLGTATIALKEFLAKYS 103 (319)
Q Consensus 63 -~~-----~lq~~~L~VeV~d~~~~---------~~kDklIG~a~IpL~dL~~~~~ 103 (319)
+. .++...+.|+||+++.. ..+|-+||+++|||.+|+.+..
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs 135 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS 135 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc
Confidence 21 14567899999997642 2467899999999999998754
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-05 Score=85.08 Aligned_cols=89 Identities=13% Similarity=0.273 Sum_probs=72.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
+++.|+|++|+ ++ - .|+|+.+-..+.+..||.+.++ +.||+|||.-.|.|.... ....+|.|||.++ +.
T Consensus 54 ~~~~~~~~~~~----~~--~-~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~s 122 (644)
T PLN02964 54 GIALLTLVGAE----MK--F-KDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKNG--PHLARISVFETNR-LS 122 (644)
T ss_pred CeEEEEeehhh----hc--c-CCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccCC--cceEEEEEEecCC-CC
Confidence 67889999997 21 1 3776655555889999999875 999999999999887653 3557999999998 79
Q ss_pred CCceeEEEEEechhhccccc
Q 020960 84 RERLLGTATIALKEFLAKYS 103 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~ 103 (319)
+++++|.++++|.++..+..
T Consensus 123 ~n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred HHHhhhheeecHhhccHHHH
Confidence 99999999999999987754
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.2e-05 Score=80.77 Aligned_cols=115 Identities=19% Similarity=0.163 Sum_probs=84.7
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC------CCeEEeeecCCCCCCCeeeEEEEEEeCCCC-CCcceEEEEE
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP------NNKYCTKIDASGKENPVWRTKFAAVVDDSN-FQDAALHVEV 75 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~------~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~-lq~~~L~VeV 75 (319)
-..++|+|+.|.+|+=. ..+.-.|||.|.+-+ +.|..|+.. +++-.|.+||+|.|.+.... -+.-.|.|.|
T Consensus 1124 ehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtK-snnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTK-SNNWAPKYNETFHFFLGNEGGPEHYELQFCV 1201 (1283)
T ss_pred cceEEEEEEecccccch-hccccccceEEEEecCcccchhhhcccccc-CCCcCcccCceeEEEeccCCCCceEEEEEee
Confidence 35789999999999854 346679999999843 356778874 46888999999999986542 2345788888
Q ss_pred EecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccce
Q 020960 76 YSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQG 131 (319)
Q Consensus 76 ~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G 131 (319)
.|.-= .+.|+.||.+.+.|.++.++..- .-|++|-++=.....|
T Consensus 1202 KDYCF-AReDRvvGl~VlqL~~va~kGS~-----------a~W~pLgrrihmDeTG 1245 (1283)
T KOG1011|consen 1202 KDYCF-AREDRVVGLAVLQLRSVADKGSC-----------ACWVPLGRRIHMDETG 1245 (1283)
T ss_pred hhhee-ecccceeeeeeeehhhHhhcCce-----------eEeeeccccccccccc
Confidence 88652 35899999999999999987432 2488886533333334
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0011 Score=55.86 Aligned_cols=127 Identities=20% Similarity=0.318 Sum_probs=83.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCC---eEEeeecCCCCCCCeeeEEEEEEeCCC------CCCcceEEE
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNN---KYCTKIDASGKENPVWRTKFAAVVDDS------NFQDAALHV 73 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~---k~kTkV~k~gg~NPvWNEtF~f~V~~~------~lq~~~L~V 73 (319)
+-.+.|+|++.+++... ....||+ |-.++. ..+|.........=.|||.|.+.+.-. .++...++|
T Consensus 6 kf~~~l~i~~l~~~p~~----~~~v~v~-wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSS----NGKVFVK-WKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eEEEEEEEEEeECcCCC----CCEEEEE-EEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 34688999999988762 1233333 333333 356654444455679999998876421 144577889
Q ss_pred EEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeecCCCC
Q 020960 74 EVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEEREEP 146 (319)
Q Consensus 74 eV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~~~~~ 146 (319)
.|+.... ..+...||++.|+|.++...... .....+.|.. ..+..-.|+|+|++....+.+
T Consensus 81 ~v~~~~~-~~~k~~lG~~~inLaey~~~~~~---------~~~~~~~l~~--~~~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 81 SVFEVDG-SGKKKVLGKVSINLAEYANEDEE---------PITVRLLLKK--CKKSNATLSISISLSELREDP 141 (143)
T ss_pred EEEEecC-CCccceEEEEEEEHHHhhCcCCC---------cEEEEEeCcc--CCCCCcEEEEEEEEEECccCC
Confidence 9988743 12336999999999999986421 1234566653 346678999999998876654
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.75 E-value=3e-05 Score=62.95 Aligned_cols=91 Identities=14% Similarity=0.261 Sum_probs=70.1
Q ss_pred EEEEEEecCCCCCCCCC-CCCcEEEEEE--CCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 7 EVCLISARGLRRSSSLW-KLQWFAVGWI--DPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 7 eVtViSAr~Lk~~d~~g-k~DPYV~v~l--d~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
=|+|+.++||.-...-+ ...-|++--+ ......||++.+ |..||+++|+|.|.|.-..+++..|.|+|+.. ..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~---~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ---TP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeecc---CC
Confidence 47899999997543333 3556765444 334677888754 68999999999999987667789999999994 35
Q ss_pred CCceeEEEEEechhhccc
Q 020960 84 RERLLGTATIALKEFLAK 101 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~ 101 (319)
+.+.||++.+.|+++-.+
T Consensus 78 RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred ccceeeEEEeecccCCHH
Confidence 889999999999987654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=78.19 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=70.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC------CeEEeeecCCCCCCCeeeEE-EEEE-eCCCCCCcceEEEEE
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN------NKYCTKIDASGKENPVWRTK-FAAV-VDDSNFQDAALHVEV 75 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~------~k~kTkV~k~gg~NPvWNEt-F~f~-V~~~~lq~~~L~VeV 75 (319)
.+|.|+|||++-|... +...||.|.+.+. .++||++..+++.||+|||. |.|. |--++ ...|+|-|
T Consensus 703 ~t~sV~VISgqFLSdr----kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe--LA~lRiav 776 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDR----KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE--LASLRIAV 776 (1189)
T ss_pred eeEEEEEEeeeecccc----ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc--hhheeeee
Confidence 5799999999988654 4679999999642 56799999999999999984 5553 21111 47899999
Q ss_pred EecCCCCCCCceeEEEEEechhhccccc
Q 020960 76 YSREPIFLRERLLGTATIALKEFLAKYS 103 (319)
Q Consensus 76 ~d~~~~~~kDklIG~a~IpL~dL~~~~~ 103 (319)
|++.. ++||.--+|+..|..++.
T Consensus 777 yeEgg-----K~ig~RIlpvd~l~~GYr 799 (1189)
T KOG1265|consen 777 YEEGG-----KFIGQRILPVDGLNAGYR 799 (1189)
T ss_pred eccCC-----ceeeeeccchhcccCcce
Confidence 98764 899999999999998864
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.4e-05 Score=84.51 Aligned_cols=90 Identities=20% Similarity=0.177 Sum_probs=74.5
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCC-eEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNN-KYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~-k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
..++|.|++|.+|...|..++.|||+++.+..+. .-++..+. +++||++++-|.+.+.-.+ ...|.|+||+.+. +
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip-~tlnPVfgkmfel~~~lp~--ek~l~v~vyd~D~-~ 688 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIP-NTLNPVFGKMFELECLLPF--EKDLIVEVYDHDL-E 688 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCc-CCCCcHHHHHHHhhcccch--hhcceeEEEEeec-c
Confidence 4689999999999999999999999999995432 23445555 5999999999988876553 3678999999997 6
Q ss_pred CCCceeEEEEEechh
Q 020960 83 LRERLLGTATIALKE 97 (319)
Q Consensus 83 ~kDklIG~a~IpL~d 97 (319)
.+|+.||+.+|+|+.
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 889999999999984
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00012 Score=71.31 Aligned_cols=88 Identities=15% Similarity=0.082 Sum_probs=72.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
...|.|+++.+..|..+|..+-.||||.+++.+. .++||.+.|+ +.||++||.|.|.+....+-...+.|.|||.
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccchhcceEEEeeccc
Confidence 3468899999999999988888999999999643 5778998775 9999999999999988766568899999998
Q ss_pred CCCCCCCceeEEEE
Q 020960 79 EPIFLRERLLGTAT 92 (319)
Q Consensus 79 ~~~~~kDklIG~a~ 92 (319)
.. -...+.+|-..
T Consensus 311 ~~-G~s~d~~GG~~ 323 (362)
T KOG1013|consen 311 DI-GKSNDSIGGSM 323 (362)
T ss_pred CC-CcCccCCCccc
Confidence 85 24677777643
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0018 Score=57.20 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=82.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-CC----eEEeeecCCCCCCCeeeEEEEEEeCCCCCC-cceEEEEEEe
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDP-NN----KYCTKIDASGKENPVWRTKFAAVVDDSNFQ-DAALHVEVYS 77 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~-~~----k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq-~~~L~VeV~d 77 (319)
+.|+|+|++|.++.-. ...|-||++.+.. .. ...|+.+. ..++.|||-+.|.|.-..+. ...|.|+||+
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEE
Confidence 5689999999988743 2358889888742 21 12344333 36899999999987544333 5789999998
Q ss_pred cCCCC---CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeec-CCCCCCCCCCC
Q 020960 78 REPIF---LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEE-REEPSSYPGNE 153 (319)
Q Consensus 78 ~~~~~---~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~-~~~~~~~~G~~ 153 (319)
..... .+...||.+.++|=+... .|+ +|...+.++-.+. .++.-.+-|+.
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd~~~-------------------~Lr-------~G~~~L~lW~~~~~~~~~~np~g~~ 136 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFDYTD-------------------TLV-------SGKMALNLWPVPHGLEDLLNPIGVT 136 (158)
T ss_pred EecccCCCCceEEEEEEEEEEECCCC-------------------hhh-------CCCEEEEEEcCCcCchhhcCCcCcC
Confidence 65311 122458888877655221 243 3777777776543 45566777887
Q ss_pred CCccCCCCCCceeeec
Q 020960 154 GGIMLADHSNNFMLPT 169 (319)
Q Consensus 154 ~~~~~pd~~~gi~~~~ 169 (319)
+ .-|+.++ ++|.+
T Consensus 137 ~--~Np~~~~-~~l~~ 149 (158)
T cd08398 137 G--SNPNKDT-PCLEL 149 (158)
T ss_pred c--CCCCCCc-eEEEE
Confidence 5 5566654 34333
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0035 Score=56.02 Aligned_cols=123 Identities=14% Similarity=0.126 Sum_probs=75.5
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-CC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCC-cceEEEEEE
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID-PN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQ-DAALHVEVY 76 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld-~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq-~~~L~VeV~ 76 (319)
...++|+|+++.+|.-. ....+-||++.+. +. ...+|+... ...++.|||.+.|.|.-..+. ...|.|.||
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr~ArLciti~ 83 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPRMARLCFAIY 83 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCChhHeEEEEEE
Confidence 35689999999999751 2346778888774 22 223555443 346799999999987544333 478999999
Q ss_pred ecCCCC---------------CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEee
Q 020960 77 SREPIF---------------LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISE 141 (319)
Q Consensus 77 d~~~~~---------------~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~ 141 (319)
+..... .++..||.+.++|=+... +|+ +|...|.++-..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~-------------------~Lr-------~G~~~L~lW~~~ 137 (173)
T cd08693 84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG-------------------QLK-------TGDHTLYMWTYA 137 (173)
T ss_pred EecccccccccccccccccccCcceEEEEEeEEEEcccc-------------------hhh-------cCCeEEEecCCC
Confidence 854210 123456666665544221 133 477777777544
Q ss_pred c--CCCCCCCCCCCC
Q 020960 142 E--REEPSSYPGNEG 154 (319)
Q Consensus 142 ~--~~~~~~~~G~~~ 154 (319)
+ .++.-.+.|+..
T Consensus 138 ~~~~~~~~nP~gt~~ 152 (173)
T cd08693 138 EDQSEDLLNPLGTVE 152 (173)
T ss_pred ccccccccCCCccCc
Confidence 3 244455567775
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=55.14 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=58.6
Q ss_pred EEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCC-----CCcceEEEEEEecCCCCCCCceeEEEEEechhhcccc
Q 020960 28 FAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN-----FQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 28 YV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~-----lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
||++.+..=+.+.|.++. |.+|.+|-+-.+.|.... +++..|.||++.... ..-+.||.++|+|.++++..
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g--~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG--SDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S--S-EEEEEEEEE--SHHHH--
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc--CCeEEEEEEEeechhhhcCC
Confidence 677778655788999985 799999999999887643 457899999998663 46789999999999999654
Q ss_pred cCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEee
Q 020960 103 SKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISE 141 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~ 141 (319)
..+ -..+..|.. .+++.-|.|++.+++.-
T Consensus 78 ~~~---------i~~~~~l~g-~~~~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 78 GER---------IHGSATLVG-VSGEDFGTLEYWIRLRV 106 (107)
T ss_dssp S-----------EEEEEEE-B-SSS-TSEEEEEEEEEEE
T ss_pred Cce---------EEEEEEEec-cCCCeEEEEEEEEEecC
Confidence 322 133556664 56779999999999863
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00063 Score=67.36 Aligned_cols=107 Identities=22% Similarity=0.193 Sum_probs=80.5
Q ss_pred ceEEEEEEEEecCCCCCCCC-CCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSL-WKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~-gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
++.|+|.|+.|++|-..... ...+|||+|++.++ .|.||+..++ +.+|.+-+.+.|.-..+ ...|.++||.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~---~k~Lq~tv~g 343 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPP---GKYLQGTVWG 343 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCCC---ccEEEEEEec
Confidence 56899999999999765432 25799999999643 6778988765 77776666666665544 6889999997
Q ss_pred cCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 78 REPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
.-...-.+.++|.++|-|.+|...... ...||.|..
T Consensus 344 dygRmd~k~fmg~aqi~l~eL~ls~~~----------~igwyKlfg 379 (405)
T KOG2060|consen 344 DYGRMDHKSFMGVAQIMLDELNLSSSP----------VIGWYKLFG 379 (405)
T ss_pred cccccchHHHhhHHHHHhhhhcccccc----------ceeeeeccC
Confidence 532256889999999999999876432 356899874
|
|
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.002 Score=62.91 Aligned_cols=93 Identities=19% Similarity=0.184 Sum_probs=68.8
Q ss_pred ceEEEEEEEEecCCCCCCC--CCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCC
Q 020960 3 KIWVEVCLISARGLRRSSS--LWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREP 80 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~--~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~ 80 (319)
+++|.|.+..+|+|+-... ....+-||+++.|..++.+|.|.. ++.-=.|.|+|.+.|-.. ..|++-||++.+
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs-~~~~f~w~e~F~~Dvv~~----~vl~~lvySW~p 124 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRS-SGPGFAWAEDFKHDVVNI----EVLHYLVYSWPP 124 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecccCcccccccc-CCCCccchhhceeecccc----eeeeEEEeecCc
Confidence 5789999999999986543 234789999999988999998854 466778999999988764 679999999987
Q ss_pred CCCCCceeEEEEEechhhccc
Q 020960 81 IFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL~~~ 101 (319)
-.+.|+-=.-.+.+..+.+.
T Consensus 125 -q~RHKLC~~g~l~~~~v~rq 144 (442)
T KOG1452|consen 125 -QRRHKLCHLGLLEAFVVDRQ 144 (442)
T ss_pred -hhhccccccchhhhhhhhhc
Confidence 45666532223444444443
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.025 Score=55.92 Aligned_cols=125 Identities=13% Similarity=0.183 Sum_probs=92.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCC-----CCcceEEEEEEecCC
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN-----FQDAALHVEVYSREP 80 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~-----lq~~~L~VeV~d~~~ 80 (319)
+.|.|+++++.... .+..-.+...+++. ...|..+. .+..|.||..+...++... .++..|+++||..+.
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~-~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~ 76 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNGE-SLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG 76 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCCc-eeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence 67899999988754 34677788888765 55666554 4789999999999987543 457899999999873
Q ss_pred CCCCCceeEEEEEechhh---cccccCCCCCCCCCccceEEEEeEeC--CCCccceEEEEEEEEeecCC
Q 020960 81 IFLRERLLGTATIALKEF---LAKYSKNSEGSRSGIEEVGSYQLRKK--NSNKPQGFIDVSVCISEERE 144 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL---~~~~~~~~~~~~~~~~~~~sy~Lrr~--~sgKp~G~L~lsL~f~~~~~ 144 (319)
...+.+.||.+.++|..+ ..+.. .....||.|..- +-.+.+-+|.+.|.+.....
T Consensus 77 ~~~~re~iGyv~LdLRsa~~~~~~~~---------~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 77 STGKRESIGYVVLDLRSAVVPQEKNQ---------KQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CCCcceeccEEEEEcccccccccccc---------ccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 257889999999999999 33311 223459999862 11234779999999987644
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0052 Score=63.53 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=66.2
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEEC--CC---CeEEeeecCCCCCCCeeeEEEEEEeCCCC--CCcceEEEEEEecCCCC
Q 020960 10 LISARGLRRSSSLWKLQWFAVGWID--PN---NKYCTKIDASGKENPVWRTKFAAVVDDSN--FQDAALHVEVYSREPIF 82 (319)
Q Consensus 10 ViSAr~Lk~~d~~gk~DPYV~v~ld--~~---~k~kTkV~k~gg~NPvWNEtF~f~V~~~~--lq~~~L~VeV~d~~~~~ 82 (319)
.+.|++|.+.+.+++.|||..+.-- .. ..++|.+.++ ++||.|-+ |.+.+..-- .....+.|+|||.+. .
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~-~ 218 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDS-N 218 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccCC-C
Confidence 3447788888899999999877652 11 4578888875 99999987 344433210 124788899999986 5
Q ss_pred CCCceeEEEEEechhhcc
Q 020960 83 LRERLLGTATIALKEFLA 100 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~ 100 (319)
.++++||++...+.++..
T Consensus 219 ~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCcCceeEecccHHHhcc
Confidence 788999999999999975
|
|
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.018 Score=47.03 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=50.2
Q ss_pred CCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCCceeEEEEEechhh
Q 020960 25 LQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEF 98 (319)
Q Consensus 25 ~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL 98 (319)
.+-.|++.+|......|.-.. -.+-.||++|.|.++.. ..|.|.||-++- ..+=|..-+-|.+.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~--~s~q~WDQ~Fti~LdRs----RELEI~VywrD~----RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP--KSNQAWDQSFTLELERS----RELEIAVYWRDW----RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc--cccccccceeEEEeecc----cEEEEEEEEecc----hhhhhheeeEhhhh
Confidence 577789999988888888654 35778999999999874 889999998763 24456667777773
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.052 Score=48.15 Aligned_cols=131 Identities=10% Similarity=0.168 Sum_probs=90.5
Q ss_pred ceEEEEEEEEecCCCCCCC-C-CCCCcEEEEEEC-CCCeEEeeecCCCCCCCeeeEEEEEEeCCCCC-----------Cc
Q 020960 3 KIWVEVCLISARGLRRSSS-L-WKLQWFAVGWID-PNNKYCTKIDASGKENPVWRTKFAAVVDDSNF-----------QD 68 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~-~-gk~DPYV~v~ld-~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~l-----------q~ 68 (319)
.+.|.|.|..+|-.-..-. . +..+.-+++.+. .+++++|+.+. ...+|.++|.|.|.+..... -.
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 4678899988875432211 0 334444555553 67899999887 58999999999999976420 14
Q ss_pred ceEEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCC--ccceEEEEEEEEeecCC
Q 020960 69 AALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSN--KPQGFIDVSVCISEERE 144 (319)
Q Consensus 69 ~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sg--Kp~G~L~lsL~f~~~~~ 144 (319)
..|++-|...+. .+..+++|+-.+.=..++...... .....+|....+. -+.|.|++.|.+.+...
T Consensus 87 ~pihivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~~---------~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~ 154 (156)
T PF15627_consen 87 DPIHIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNGS---------TSFTVELCGVGPESKVPVGILDLRLELLPNLN 154 (156)
T ss_pred CceEEEEEEecC-CCceEeeeeceehHHHHhccCCCc---------cceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence 578888887775 466799999999888888765431 1235666542222 37999999999988754
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.00065 Score=73.83 Aligned_cols=117 Identities=12% Similarity=0.011 Sum_probs=84.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCC------CC-cceEEEEEEec
Q 020960 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN------FQ-DAALHVEVYSR 78 (319)
Q Consensus 6 LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~------lq-~~~L~VeV~d~ 78 (319)
+++.|.+|+.|...+..+..|||+.|.+- .+.++|-++. +++||+||+++.|.--+-. ++ --.+.|||||.
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~-~qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFC-GQSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcc-cccceeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 45567778888888777889999999885 4566888876 5999999999987521110 11 24678999999
Q ss_pred CCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEE
Q 020960 79 EPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCI 139 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f 139 (319)
++ .+.++++|+......-...-. .+.|+++.+ ++...|++.++..+
T Consensus 286 dr-~g~~ef~gr~~~~p~V~~~~p------------~lkw~p~~r--g~~l~gd~l~a~el 331 (1105)
T KOG1326|consen 286 DR-SGINEFKGRKKQRPYVMVQCP------------ALKWVPTMR--GAFLDGDVLIAAEL 331 (1105)
T ss_pred hh-hchHHhhcccccceEEEecCC------------ccceEEeec--ccccccchhHHHHH
Confidence 88 689999998766544333311 245888886 77788887766543
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.019 Score=49.69 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=60.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-C----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCC-cceEEEEEEe
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDP-N----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQ-DAALHVEVYS 77 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~-~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq-~~~L~VeV~d 77 (319)
..++|+|....++... .....+-||++.+.. . ....|+... ...++.|||.+.|.+.-..+. ...|.|.||+
T Consensus 8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVP-FSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCc-CCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 3578888888877541 123467888887742 2 222444332 236899999999986543333 4789999998
Q ss_pred cCCCC-CCCceeEEEEEechhh
Q 020960 78 REPIF-LRERLLGTATIALKEF 98 (319)
Q Consensus 78 ~~~~~-~kDklIG~a~IpL~dL 98 (319)
..... .++..||.+.++|=+.
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCCCcceEEEEEeEEeEcc
Confidence 65311 2568999999987663
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.067 Score=48.32 Aligned_cols=138 Identities=12% Similarity=0.022 Sum_probs=72.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-CC---CeEEeeecCCCCCCCeeeEEEEEEeCCCCCC-cceEEEEEEec
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWID-PN---NKYCTKIDASGKENPVWRTKFAAVVDDSNFQ-DAALHVEVYSR 78 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld-~~---~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq-~~~L~VeV~d~ 78 (319)
..++|+|++++.+. .+......-||++.+. +. ...+|+...- +.++.|||-+.|.|.-..+. ...|.|.||+.
T Consensus 10 ~~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEE
Confidence 46889999987432 3222334577777663 22 1224554333 56799999988887644333 57899999986
Q ss_pred CCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeecCCC---CCCC-CCCCC
Q 020960 79 EPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEEREE---PSSY-PGNEG 154 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~~~~---~~~~-~G~~~ 154 (319)
.....+.+..|.. +.++-..+ + ...-+....|.+.++-=.+|+..|.++-.+...+ --.+ -|+++
T Consensus 88 ~~~~~~~~~~~~~--~~~~~~~~---~------~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~~~~~~~~~~np~~gt~~ 156 (178)
T cd08399 88 KAPALSSKKSAES--PSSESKGK---H------QLLYYVNLLLIDHRFLLRTGEYVLHMWQISGKGEDQGSVNADKLTSA 156 (178)
T ss_pred ecCcccccccccc--cccccccc---c------ceEEEEEEEEEcCCCceecCCEEEEEecCCCcccccceeCCcccccc
Confidence 4211112223321 10010000 0 1222344455542222246888898888764333 2334 26775
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.097 Score=46.64 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=35.5
Q ss_pred eEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCC--ceeEEEEEechh
Q 020960 38 KYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRE--RLLGTATIALKE 97 (319)
Q Consensus 38 k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kD--klIG~a~IpL~d 97 (319)
..+|.|.- ...+|.|+|+|.+.|.....+..-|.|++++......++ +.+|.+.++|-+
T Consensus 60 ~~~S~v~y-h~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYY-HNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----T-T-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEe-cCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 34555543 368999999999999776445678999999865311222 799999999998
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.063 Score=47.58 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=60.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-CCC----eEEeeecC---CCCCCCeeeEEEEEEeCCCCCC-cceEEEE
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWID-PNN----KYCTKIDA---SGKENPVWRTKFAAVVDDSNFQ-DAALHVE 74 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld-~~~----k~kTkV~k---~gg~NPvWNEtF~f~V~~~~lq-~~~L~Ve 74 (319)
..|.|+|.++.++.........|-||++.+. +.+ ...|+... .-...+.|||.+.|.+.-..+. ...|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 4688999999988765322347888988884 221 22443211 1123577999999887543332 4789999
Q ss_pred EEecCCCCC---------CCceeEEEEEechhh
Q 020960 75 VYSREPIFL---------RERLLGTATIALKEF 98 (319)
Q Consensus 75 V~d~~~~~~---------kDklIG~a~IpL~dL 98 (319)
||+... .. ++..||.+.++|=+.
T Consensus 88 l~~~~~-~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTS-SPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEec-CCccccccccccceEEEEEeEeeEcc
Confidence 998653 12 356788877776553
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.16 Score=46.58 Aligned_cols=59 Identities=15% Similarity=0.308 Sum_probs=42.5
Q ss_pred CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCC---ceeEEEEEech
Q 020960 37 NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRE---RLLGTATIALK 96 (319)
Q Consensus 37 ~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kD---klIG~a~IpL~ 96 (319)
...+|.|.-. ..+|.|||++.+.|.....+..-|.|+++++.....+| +.+|-+-++|-
T Consensus 53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQ-VDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEee-cCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4567776332 57999999999999776556788999998854211233 67888888875
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.1 Score=46.08 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=50.8
Q ss_pred CCCcEEEEEECC-CC----eEEeeecCCCCCCCeeeEEEEEEeCCCCCC-cceEEEEEEecCCCCCCCceeEEEEEechh
Q 020960 24 KLQWFAVGWIDP-NN----KYCTKIDASGKENPVWRTKFAAVVDDSNFQ-DAALHVEVYSREPIFLRERLLGTATIALKE 97 (319)
Q Consensus 24 k~DPYV~v~ld~-~~----k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq-~~~L~VeV~d~~~~~~kDklIG~a~IpL~d 97 (319)
..|-||++.+.. .. ...|+.+. -+....|||-+.|.|.-..+. ...|.|+||+... ..+...||.+.++|=+
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd 106 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeEC
Confidence 478899888842 21 22444433 356789999999887644333 5789999999764 3467889999998765
Q ss_pred h
Q 020960 98 F 98 (319)
Q Consensus 98 L 98 (319)
.
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 3
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.19 Score=45.92 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=43.8
Q ss_pred CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC-CCCceeEEEEEechh
Q 020960 37 NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF-LRERLLGTATIALKE 97 (319)
Q Consensus 37 ~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~-~kDklIG~a~IpL~d 97 (319)
..++|.|.-. ..+|.|||++.+.|.....+..-|.|+++++.... ...+.+|-+-++|-+
T Consensus 53 se~~S~V~yH-~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYH-NNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEc-CCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 4567776653 68999999999999876556788999888854211 123779999999854
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.23 Score=42.44 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=44.5
Q ss_pred CcEEEEEEC-CC-----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCC-cceEEEEEEecCCCCCCC----ceeEEEEEe
Q 020960 26 QWFAVGWID-PN-----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQ-DAALHVEVYSREPIFLRE----RLLGTATIA 94 (319)
Q Consensus 26 DPYV~v~ld-~~-----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq-~~~L~VeV~d~~~~~~kD----klIG~a~Ip 94 (319)
+-||++.+. +. ....|+...-...++.|||.+.|.|.-..+. ...|.|+||.... ..++ ..||.+.++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-KKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-STTT--EEEEEEEEEEE
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-CCccccceeEEEEEEEE
Confidence 356666663 22 1225554432126999999999887433222 4789999998764 2333 689999999
Q ss_pred chhh
Q 020960 95 LKEF 98 (319)
Q Consensus 95 L~dL 98 (319)
|=+.
T Consensus 82 lFd~ 85 (142)
T PF00792_consen 82 LFDY 85 (142)
T ss_dssp SB-T
T ss_pred eECC
Confidence 8775
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.31 Score=43.19 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=58.3
Q ss_pred CCCCcEEEEEECCCCeEEeeecCC-CCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCCceeEEEEEechhhccc
Q 020960 23 WKLQWFAVGWIDPNNKYCTKIDAS-GKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 23 gk~DPYV~v~ld~~~k~kTkV~k~-gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~ 101 (319)
.+..-|+++.++++...+|+...- ....=.+||+|.+.|..- -+.|.|+||.+.. ..+++|+++.|+|-.....
T Consensus 35 ~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~---Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 35 QKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW---PESIKLEIYEKSG--LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred hheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC---CCEEEEEEEEccC--ccceEEEEEEeeCCCCccc
Confidence 347889999999888888875432 234456899999999663 3789999999884 7999999999998877665
|
|
| >cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.36 Score=42.89 Aligned_cols=56 Identities=18% Similarity=0.171 Sum_probs=40.9
Q ss_pred eeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC----CCCCceeEEEEEechh
Q 020960 41 TKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI----FLRERLLGTATIALKE 97 (319)
Q Consensus 41 TkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~----~~kDklIG~a~IpL~d 97 (319)
|.++-.+ .+|.|+|+|.+.|.....+..-|.|++++.... ....+.+|.+-++|-+
T Consensus 56 ~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3333333 899999999999965433567899999986521 1347889999999986
|
Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.3 Score=35.84 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=46.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEC-CCC----eEEeeecCCCCCCCeeeEEEEEEeCCCCCC-cceEEEEEEec
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWID-PNN----KYCTKIDASGKENPVWRTKFAAVVDDSNFQ-DAALHVEVYSR 78 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld-~~~----k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq-~~~L~VeV~d~ 78 (319)
.+.+.+..++++.-.......+-||++.+. +.. ...|+.+ .....+.|||-+.|.|.-..+. ...|.|+||+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 356677777766543221224889988884 221 2245433 3355699999998887544332 57899999985
Q ss_pred C
Q 020960 79 E 79 (319)
Q Consensus 79 ~ 79 (319)
.
T Consensus 91 ~ 91 (100)
T smart00142 91 K 91 (100)
T ss_pred e
Confidence 4
|
Outlier of C2 family. |
| >PTZ00447 apical membrane antigen 1-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.05 E-value=2.5 Score=42.33 Aligned_cols=96 Identities=11% Similarity=0.179 Sum_probs=66.2
Q ss_pred CCcEEEEEECCCCeEEeeecCCCCCCC-eeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCCceeEEEEEech-hhcccc
Q 020960 25 LQWFAVGWIDPNNKYCTKIDASGKENP-VWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALK-EFLAKY 102 (319)
Q Consensus 25 ~DPYV~v~ld~~~k~kTkV~k~gg~NP-vWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~-dL~~~~ 102 (319)
..-|+.|+.+ +...+|..+..+-.+- .-.|...+.|..- +..|+|.||-.. +.+...||.+.+.++ ++..+.
T Consensus 74 khiyIef~~G-r~d~TT~~IpTsKK~RI~IqqRV~IkIRQc---DnTLkI~lfKKk--Lvkk~hIgdI~InIn~dIIdk~ 147 (508)
T PTZ00447 74 KHIYIIFSTD-KYDFTTDEIPTNKKNRIHIDQRVDIKIRQC---DETLRVDLFTTK--LTKKVHIGQIKIDINASVISKS 147 (508)
T ss_pred eeEEEEEEcC-ceEEEccccccCcCceEEEeeeeeeeeeec---CceEEEEEEecc--ccceeEEEEEEecccHHHHhcc
Confidence 5678888884 4455664333222221 3445555655443 478999999887 689999999999998 555554
Q ss_pred cCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEE
Q 020960 103 SKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVC 138 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~ 138 (319)
=.+ ..||.++ +.|+..+.|+++++
T Consensus 148 FPK----------nkWy~c~--kDGq~~cRIqLSFh 171 (508)
T PTZ00447 148 FPK----------NEWFVCF--KDGQEICKVQMSFY 171 (508)
T ss_pred CCc----------cceEEEe--cCCceeeeEEEEeh
Confidence 333 3499997 59999999999876
|
|
| >cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins | Back alignment and domain information |
|---|
Probab=88.58 E-value=1.7 Score=39.59 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=43.2
Q ss_pred CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC--CC------CCCCceeEEEEEechh
Q 020960 37 NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE--PI------FLRERLLGTATIALKE 97 (319)
Q Consensus 37 ~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~--~~------~~kDklIG~a~IpL~d 97 (319)
...+|.|.-. +.+|.|+|++.+.|.....+..-|.|+.|+.. .. ...++.+|.+.+||-.
T Consensus 56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHH-NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEc-CCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 3456666544 68999999999998765445678889988854 10 1224679999999876
|
Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande |
| >cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins | Back alignment and domain information |
|---|
Probab=88.16 E-value=1.6 Score=39.52 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=41.8
Q ss_pred CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC-----CCCCceeEEEEEechh
Q 020960 37 NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI-----FLRERLLGTATIALKE 97 (319)
Q Consensus 37 ~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~-----~~kDklIG~a~IpL~d 97 (319)
..++|.|.- .+.+|.|+|+|.+.|.....+..-|.|+.++..-. ...++.+|.+-+||-+
T Consensus 54 ~~~~S~V~y-Hnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTY-HNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEE-eCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 345666654 37899999999999976544567888888884320 1124678988888764
|
Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand |
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.73 E-value=0.19 Score=53.58 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=63.6
Q ss_pred CCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCCceeEEEEEechhhccccc
Q 020960 24 KLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYS 103 (319)
Q Consensus 24 k~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~ 103 (319)
..|+|+.|.++-++...+.+.+ .+..|.|||+|.+.|... ..+.|.|+.+.. ..++.....+++-.+++....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~-~~~~~~~~~~F~~~v~~~----~~~~i~v~~~~~-~~~~~~~a~~~~~~e~~k~~~- 99 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKV-ELRIPELRETFHVEVVAG----GAKNIIVLLKSP-DPKALSEAQLSLQEESQKLLA- 99 (694)
T ss_pred hhhhhheeccceeecccccCCC-CCCCchhhhheeeeeecC----CceEEEEEecCC-cchhhHHHhHHHHHHHHHHHh-
Confidence 3799999999654444444433 489999999999998764 678888888764 355555555555545444411
Q ss_pred CCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeecCC
Q 020960 104 KNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEERE 144 (319)
Q Consensus 104 ~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~~~ 144 (319)
..+..|..+ ++.|++.+.+.+....+
T Consensus 100 ---------~~~~~w~~~------~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 100 ---------LEQRLWVLI------EELGTLLKPAALTGTLE 125 (694)
T ss_pred ---------hhhhhcccc------ccccceeeeecccCcCC
Confidence 112234443 35688888888777555
|
|
| >KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.52 E-value=0.33 Score=53.15 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=62.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID----PNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld----~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.+.|.|++|..|+.. ..-||+.+++ ...+.+|+++++ +..|-||+.|.+.+-.. ..++|+++++
T Consensus 758 ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iad-T~~~~~npe~hv~~~~s----qS~r~~~~ek 827 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIAD-TAEPQWNPEKHVPVIES----QSSRLEKTEK 827 (1112)
T ss_pred ccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeec-ccCCCCChhcccchhhc----cccchhhhcc
Confidence 36788999999999865 4778888774 247889999986 89999999999987653 4566666664
Q ss_pred CCC---------CCCCceeEEEEEechhhc
Q 020960 79 EPI---------FLRERLLGTATIALKEFL 99 (319)
Q Consensus 79 ~~~---------~~kDklIG~a~IpL~dL~ 99 (319)
... ..+++..|++.+.|.-..
T Consensus 828 ~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~ 857 (1112)
T KOG4269|consen 828 STPVEKLIDSHSQNSQNEEKRSRMKLDPQP 857 (1112)
T ss_pred cchHHHhhhccchhhcccccccccccCccc
Confidence 320 235556666666655443
|
|
| >KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.24 E-value=5.8 Score=42.60 Aligned_cols=83 Identities=16% Similarity=0.269 Sum_probs=59.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC--
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI-- 81 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~-- 81 (319)
-.++|.|.+-++||.... .-=.||+.++++ +|..|.-. ....|.|...=-|.-... .-.++|++|.+...
T Consensus 341 ~smevvvmevqglksvap--nrivyctmeveg-eklqtdqa--easkp~wgtqgdfstthp---lpvvkvklftestgvl 412 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVAP--NRIVYCTMEVEG-EKLQTDQA--EASKPKWGTQGDFSTTHP---LPVVKVKLFTESTGVL 412 (1218)
T ss_pred eeeeEEEeeeccccccCC--CeeEEEEEEecc-cccccchh--hhcCCCCCcCCCcccCCC---CceeEEEEEeecceeE
Confidence 368999999999997632 235799999986 56677644 357899998766665554 35567888876542
Q ss_pred CCCCceeEEEEEe
Q 020960 82 FLRERLLGTATIA 94 (319)
Q Consensus 82 ~~kDklIG~a~Ip 94 (319)
.+.|+-||++-+.
T Consensus 413 aledkelgrvil~ 425 (1218)
T KOG3543|consen 413 ALEDKELGRVILQ 425 (1218)
T ss_pred EeechhhCeEEEe
Confidence 3578899987553
|
|
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.87 E-value=2.5 Score=46.54 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=73.5
Q ss_pred CCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCCCCceeEEEEEechhhcccccC
Q 020960 25 LQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSK 104 (319)
Q Consensus 25 ~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~ 104 (319)
++.|+++.+......+|....+--.+|.|.+.|.+.+... ...+++.|.+.+. .+-.+.+|.++++...+..+...
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~---~g~v~~~~~~~~~-~G~s~~w~~v~~s~~~~~~~~~~ 213 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK---AGYVIFRVKGARV-PGWSKRWGRVKISFLQYCSGHRI 213 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc---ccEEEEeecCCcc-ccceeEEEEeccchhhhhccccc
Confidence 4899999997666677776665447899999999888775 3678888877764 34489999999999999987432
Q ss_pred CCCCCCCCccceEEEEeEeCCCCcc---ceEEEEEEEEeecCCCC
Q 020960 105 NSEGSRSGIEEVGSYQLRKKNSNKP---QGFIDVSVCISEEREEP 146 (319)
Q Consensus 105 ~~~~~~~~~~~~~sy~Lrr~~sgKp---~G~L~lsL~f~~~~~~~ 146 (319)
. .++.+.. .++++ .-.+.+.+.|.....+.
T Consensus 214 ~-----------~~~~Il~-~d~~~~~~~~~~~~~~~~~~~~~~~ 246 (887)
T KOG1329|consen 214 G-----------GWFPILD-NDGKPHQKGSNESLRLGFTPMEKDR 246 (887)
T ss_pred c-----------ceeeeec-cCCccccCCcccceEEeeEeechhh
Confidence 2 2555554 33333 22445556666554433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 31/140 (22%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDP-------NNKYCTKIDASGKENPVWRTKFA 58
+EV L+SA+GL + L +DP + + P W F
Sbjct: 12 LEVVLVSAKGLEDADFL--------NNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFI 63
Query: 59 AVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGS 118
V + + L +++ ++ + +G ATI L+ + +
Sbjct: 64 FTVSEGTTE---LKAKIFDKDV-GTEDDAVGEATIPLEPVFVE------------GSIPP 107
Query: 119 YQLRKKNSNKPQGFIDVSVC 138
+ +G I V++
Sbjct: 108 TAYNVVKDEEYKGEIWVALS 127
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-05
Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 30/148 (20%)
Query: 6 VEVCLISARGLRRSSSLWKLQWF---AVGWIDP-------NNKYCTKIDASGKENPVWRT 55
+++ + A L+ ++ + +DP +++ +P W
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHD 67
Query: 56 KFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEE 115
+F V + + + V+ PI + + TI +E L S++ E
Sbjct: 68 EFVTDVCNGR----KIELAVFHDAPIG-YDDFVANCTIQFEELLQNGSRHFE-------- 114
Query: 116 VGSYQLRKKNSNKPQGFIDVSVCISEER 143
L +P+G + V + +S
Sbjct: 115 -DWIDL------EPEGKVYVIIDLSGSS 135
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-05
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 35/148 (23%)
Query: 6 VEVCLISARGLR--RSSSLWKLQWFAVGWIDPNNKYCTKIDASGKE-----------NPV 52
+ V + A GL+ R S L +DP Y + P
Sbjct: 31 LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDP---YL-TVSVDQVRVGQTSTKQKTNKPT 86
Query: 53 WRTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSG 112
+ +F A V D L + V+ P+ + + T+ +E L +
Sbjct: 87 YNEEFCANVTDGG----HLELAVFHETPLG-YDHFVANCTLQFQELLRTTGASDTFEG-- 139
Query: 113 IEEVGSYQLRKKNSNKPQGFIDVSVCIS 140
L +P+G + V + ++
Sbjct: 140 -----WVDL------EPEGKVFVVITLT 156
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-05
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 34 DPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATI 93
+ T+ + V+ F + L V+V + + E LG A I
Sbjct: 78 STTCLFRTRP-LDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDR-SHLEECLGGAQI 135
Query: 94 ALKEF 98
+L E
Sbjct: 136 SLAEV 140
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 7 EVCLISARGLRRSSSLWKLQWFAVGWIDP----------NNKYCTKIDASGKENPVWRTK 56
V ++ A + + + L DP +++ T+ + NPVW
Sbjct: 6 TVVVLRATKVTKGAFGDML-----DTPDPYVELFISTTPDSRKRTRH-FNNDINPVWNET 59
Query: 57 FAAVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKE 97
F ++D + Q+ L + + ++ + LGTAT +
Sbjct: 60 FEFILDPN--QENVLEITLMDAN--YVMDETLGTATFTVSS 96
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 13/140 (9%)
Query: 8 VCLISARGLRRSSSLWKLQWFAVGWIDPN--NKYCTKIDASGKENPVWRTKFAAVVDDSN 65
V +I A L + ++ P+ K+ TK+ NPV+ +F V S
Sbjct: 23 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSE 81
Query: 66 FQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN 125
L + VY + F + ++G + + EE Q +K
Sbjct: 82 LAGKTLVMAVYDFDR-FSKHDIIGEFKVPMNTV---------DFGHVTEEWRDLQSAEKE 131
Query: 126 SNKPQGFIDVSVCISEEREE 145
+ G I S+ +
Sbjct: 132 EQEKLGDICFSLRYVPTAGK 151
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 319 | |||
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.9 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.89 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.88 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.88 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.87 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.87 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.87 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.86 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.86 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.86 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.84 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.84 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.81 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.81 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.8 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.8 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.8 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.8 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.79 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.79 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.78 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.78 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.78 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.78 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.78 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.78 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.78 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.78 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.77 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.77 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.77 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.76 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.76 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.76 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.76 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.75 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.75 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.74 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.69 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.68 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.61 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.61 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.54 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.54 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.53 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.46 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.45 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.44 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.39 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 99.17 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 99.07 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 96.94 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 95.47 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 92.93 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 91.55 | |
| 2y3a_A | 1092 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 83.13 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 82.96 |
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=169.43 Aligned_cols=126 Identities=19% Similarity=0.265 Sum_probs=108.2
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI 81 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~ 81 (319)
..+.|+|+|++|++|+..+..++.||||++++.+ .++||+++++++.||+|||+|.|.+.+. ...|+|+|||++.
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~---~~~l~~~V~d~~~- 82 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVSEG---TTELKAKIFDKDV- 82 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-CEEECCCCTTCCSSCEEEEEEEEEEESS---CCEEEEEECCSSS-
T ss_pred CcEEEEEEEEeccCCCCcccCCCcCceEEEEECC-ccceeEeccCCCCCCccCcEEEEEECCC---CCEEEEEEEECCC-
Confidence 4689999999999999998888999999999975 4779999885699999999999999863 5789999999987
Q ss_pred CCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeecCC
Q 020960 82 FLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEERE 144 (319)
Q Consensus 82 ~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~~~ 144 (319)
+.+|++||++.|+|.+|..... ....||.|.+ +++.+|+|+|+|+|.+..+
T Consensus 83 ~~~d~~lG~~~i~l~~l~~~~~----------~~~~w~~L~~--~~~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 83 GTEDDAVGEATIPLEPVFVEGS----------IPPTAYNVVK--DEEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp CTTTCCSEEEEEESHHHHHHSE----------EEEEEEEEEE--TTEEEEEEEEEEEEEECCS
T ss_pred CCCCceEEEEEEEHHHhccCCC----------CCcEEEEeec--CCccCEEEEEEEEEEeCCC
Confidence 6789999999999999965431 1245899984 7789999999999998754
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=165.74 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=105.0
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCC-CcceEEEEEEecCC
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNF-QDAALHVEVYSREP 80 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~l-q~~~L~VeV~d~~~ 80 (319)
..+.|+|+|++|++|+..+. ++.||||++++.+ +++||+++++ +.||+|||+|.|.+....+ ....|+|+|||++.
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~-~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~ 81 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD-EKKKTKKVDN-ELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET 81 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS-CEEECCCCCS-CSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC-EeEEeeeecC-CCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence 35789999999999999888 8999999999974 5799999875 8999999999999975322 25889999999997
Q ss_pred CCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEE---eEeCCCCccceEEEEEEEEeecCC
Q 020960 81 IFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQ---LRKKNSNKPQGFIDVSVCISEERE 144 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~---Lrr~~sgKp~G~L~lsL~f~~~~~ 144 (319)
+.+|++||++.|+|.+|..+... ..|+. |+.....+.+|+|+|+|+|.+...
T Consensus 82 -~~~~~~lG~~~i~l~~l~~~~~~-----------~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 82 -IGQNKLIGTATVALKDLTGDQSR-----------SLPYKLISLLNEKGQDTGATIDLVIGYDPPSG 136 (140)
T ss_dssp -SSSCCCCEEEEEEGGGTCSSSCE-----------EEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred -CCCCceEEEEEEEHHHhccCCCc-----------eeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence 67899999999999999765321 23555 765344467899999999998533
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-22 Score=166.98 Aligned_cols=129 Identities=16% Similarity=0.228 Sum_probs=99.6
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC-----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN-----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~-----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|+..+..++.||||++++.+. .++||+++++ +.||+|||+|.|.+... ...|+|+|||
T Consensus 19 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~---~~~l~~~V~d 94 (153)
T 3b7y_A 19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKK-SLNPKWNEEILFRVHPQ---QHRLLFEVFD 94 (153)
T ss_dssp CEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSS-CSSCCCCEEEEEEECTT---TCEEEEEEEE
T ss_pred ccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccC-CCCCCCCCEEEEEecCC---CCEEEEEEEE
Confidence 5789999999999999888889999999999642 5789999886 89999999999999864 4789999999
Q ss_pred cCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEEEee
Q 020960 78 REPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVCISE 141 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~f~~ 141 (319)
++. +.+|++||++.|+|.+|..+..... ......||.|..+ ++++.+|+|+|+|+|.+
T Consensus 95 ~d~-~~~d~~iG~~~i~l~~l~~~~~~~~-----~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 95 ENR-LTRDDFLGQVDVPLYPLPTENPRLE-----RPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CCS-SSCCEEEEEEEEECCSCCBCCTTSC-----CCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CCC-CcCCCeeEEEEEEHHHcccCCCccc-----ccccccccccccccCCCCcceEEEEEEEEeC
Confidence 987 6789999999999999987653210 0111358888753 24577999999999975
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=167.04 Aligned_cols=121 Identities=17% Similarity=0.254 Sum_probs=100.1
Q ss_pred CCceEEEEEEEEecCCCCCCCCCC-----------CCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcc
Q 020960 1 MGKIWVEVCLISARGLRRSSSLWK-----------LQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDA 69 (319)
Q Consensus 1 M~~~~LeVtViSAr~Lk~~d~~gk-----------~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~ 69 (319)
|..+.|+|+|++|++|+..+.+++ +||||+++++.....+|+++++ +.||+|||+|.|.+.+. .
T Consensus 3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~----~ 77 (136)
T 1gmi_A 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCNG----R 77 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEEE----C
T ss_pred ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECC-CcCCccCCEEEEEecCC----C
Confidence 346899999999999998765444 8999999997666679998764 89999999999999763 7
Q ss_pred eEEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeec
Q 020960 70 ALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 70 ~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~ 142 (319)
.|.|+|||++. +.+|++||++.|+|.++..+... ....|+.|. ++|+|+|.|+|...
T Consensus 78 ~L~~~V~d~d~-~~~dd~iG~~~i~l~~l~~~~~~---------~~~~w~~L~------~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 78 KIELAVFHDAP-IGYDDFVANCTIQFEELLQNGSR---------HFEDWIDLE------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEEEECCS-SSSCEEEEEEEEEHHHHTSTTCS---------EEEEEEECB------SSCEEEEEEEEEEE
T ss_pred EEEEEEEeCCC-CCCCCEEEEEEEEHHHhcccCCC---------CccEEEEcC------CCeEEEEEEEEEec
Confidence 89999999987 68899999999999999875321 113477775 47999999999864
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=169.87 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=100.2
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC-----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEE
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN-----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVY 76 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~-----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~ 76 (319)
..+.|+|+|++|++|+..+..+++||||+|++.+. .++||+++++ +.||+|||+|.|.|... ...|.|+||
T Consensus 6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~---~~~L~~~V~ 81 (176)
T 3m7f_B 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKK-SLNPKWNEEILFRVLPQ---RHRILFEVF 81 (176)
T ss_dssp TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSS-CSSCEEEEEEEEEECTT---TCEEEEEEE
T ss_pred CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECC-CCCCcccceEEEEEcCC---CCEEEEEEE
Confidence 46899999999999999888899999999999642 4689999885 99999999999999864 478999999
Q ss_pred ecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEEEeec
Q 020960 77 SREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~f~~~ 142 (319)
|++. +.+|++||++.|+|.+|........ ......||.|..+ ..++.+|+|+|+|+|.+.
T Consensus 82 d~d~-~~~d~~lG~~~i~l~~l~~~~~~~~-----~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 82 DENR-LTRDDFLGQVDVPLYPLPTENPRME-----RPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp ECC-----CEEEEEEEEESCSCCBC-----------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred ECCC-CCCCcEEEEEEEEHHHccccCCccc-----ccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 9987 6799999999999999987643210 0112258888753 346679999999999987
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=169.99 Aligned_cols=136 Identities=20% Similarity=0.222 Sum_probs=104.3
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI 81 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~ 81 (319)
..+.|+|+|++|++|+..+..++.||||+|++++ .++||+++++ ++||+|||+|.|.|.. ...|.|+|||++.
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~-~~~kT~v~~~-tlnP~Wne~f~f~v~~----~~~L~~~V~D~d~- 106 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNN-TNSPKWKQPLTVIVTP----VSKLHFRVWSHQT- 106 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCSS-CSSCEEEEEEEEEECT----TCEEEEEEEECCS-
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECC-EEeEccccCC-CCCCeECCEEEEEeCC----CCEEEEEEEECCC-
Confidence 4578999999999999555555699999999976 7899999884 8999999999999964 4789999999997
Q ss_pred CCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCC-CCccceEEEEEEEEeecCCCCCCCCC
Q 020960 82 FLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN-SNKPQGFIDVSVCISEEREEPSSYPG 151 (319)
Q Consensus 82 ~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~-sgKp~G~L~lsL~f~~~~~~~~~~~G 151 (319)
+.+|++||++.|+|.+|....... ......|++|.+++ +.+.+|+|.|.|.+... +.....+|
T Consensus 107 ~~~dd~lG~~~i~l~~l~~~~~~~------~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~-~~~~~~~~ 170 (173)
T 2nq3_A 107 LKSDVLLGTAALDIYETLKSNNMK------LEEVVVTLQLGGDKEPTETIGDLSICLDGLQL-ESEVVTNG 170 (173)
T ss_dssp SSCCEEEEEEEEEHHHHHHHTTTE------ESSEEEEEEEEESSCTTSEEEEEEEEEESEEC-C-------
T ss_pred CCCCceEEEEEEEHHHhcccCCCC------cceeEEEEECccCCCCCcccEEEEEEEeeeec-chhhcCCC
Confidence 679999999999999998764321 11124589998732 34679999999999866 44444444
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=164.16 Aligned_cols=120 Identities=19% Similarity=0.218 Sum_probs=102.6
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI 81 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~ 81 (319)
..+.|+|+|++|++|+..+..+++||||++++.+ .++||+++++ +.||+|||+|.|.+.+. ...|+|+|||++.
T Consensus 11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~-t~nP~wne~f~f~~~~~---~~~l~i~V~d~d~- 84 (133)
T 2ep6_A 11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYK-NLNPEWNKVFTFPIKDI---HDVLEVTVFDEDG- 84 (133)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-EEEECCCCSS-CSSCCCCEEEEEEESCT---TCEEEEEEEEEET-
T ss_pred CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC-EEEEeeeecC-CCCCccccEEEEEecCC---CCEEEEEEEECCC-
Confidence 4689999999999999998888999999999965 5789999886 89999999999999864 4789999999987
Q ss_pred CCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCC-CCccceEEEEEEEEe
Q 020960 82 FLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN-SNKPQGFIDVSVCIS 140 (319)
Q Consensus 82 ~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~-sgKp~G~L~lsL~f~ 140 (319)
+.+|++||++.|+|.++..+. ..||.|..+. .++.+|+|+|.|+|.
T Consensus 85 ~~~~~~lG~~~i~l~~l~~~~-------------~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 85 DKPPDFLGKVAIPLLSIRDGQ-------------PNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp TEEEEECCBCEEEGGGCCSSC-------------CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCCCCeeEEEEEEHHHccCCC-------------ceEEEeecCCCCCccceEEEEEEEEE
Confidence 578999999999999996532 2488887532 346899999999985
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=157.86 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=99.8
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCC
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP-NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREP 80 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~-~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~ 80 (319)
+...|+|+|++|++|+..+..+++||||++++++ ..++||+++++ ++||+|||+|.|.+... ..|.|+|||++.
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~----~~l~~~v~d~d~ 77 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYVGKT----DSITISVWNHKK 77 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSS-CSSCEEEEEEEEEEETT----CCEEEEEEEGGG
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCC-CCCCCccCEEEEEeCCC----CEEEEEEEECCC
Confidence 5678999999999999998889999999999975 57899999875 99999999999999764 459999999986
Q ss_pred CCCC---CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCC---CCccceEEEEEEEE
Q 020960 81 IFLR---ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN---SNKPQGFIDVSVCI 139 (319)
Q Consensus 81 ~~~k---DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~---sgKp~G~L~lsL~f 139 (319)
+.+ |++||++.|+|.+|....... ..+++|.++. ..+.+|+|+|+|+.
T Consensus 78 -~~~~~~d~~lG~~~i~l~~l~~~~~~~----------~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 78 -IHKKQGAGFLGCVRLLSNAISRLKDTG----------YQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp -TTSSTTTTEEEEEEECHHHHHHHTTSC----------CEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred -CCCCCCCCceEEEEEeHHHhhcccccC----------cEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 455 899999999999996543221 2367887531 22458999999875
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-21 Score=158.80 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=101.1
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI 81 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~ 81 (319)
..+.|+|+|++|++|+..+..++.||||++.++ ..+++|+++++ +.||+|||+|.|.+... ...|.|+|||++.
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~~~~kT~~~~~-t~nP~Wne~f~f~v~~~---~~~l~~~v~d~d~- 88 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVG-KTKKRTKTIYG-NLNPVWEENFHFECHNS---SDRIKVRVLDEDD- 88 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-TEEEECCCCCS-CSSCEEEEEEEEEECST---TCEEEEEEEECCC-
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC-CEEEECCccCC-CCCCCcccEEEEEecCC---CCEEEEEEEECCC-
Confidence 468999999999999998888999999999995 57889999875 89999999999999765 4789999999986
Q ss_pred C-----------CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEEEe
Q 020960 82 F-----------LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVCIS 140 (319)
Q Consensus 82 ~-----------~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~f~ 140 (319)
+ .+|++||++.|+|.++... ...||.|..+ ..++.+|+|+|+|+|.
T Consensus 89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~-------------~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 89 DIKSRVKQRFKRESDDFLGQTIIEVRTLSGE-------------MDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp SHHHHHHTTTSSCSSEEEEEEEEEGGGCCSE-------------EEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred CccccccccccCCCCccEEEEEEEHHHCcCC-------------CCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 3 6899999999999999322 1348888752 2345789999999985
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=167.26 Aligned_cols=120 Identities=19% Similarity=0.251 Sum_probs=98.2
Q ss_pred CceEEEEEEEEecCCCCCCCC----------CCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceE
Q 020960 2 GKIWVEVCLISARGLRRSSSL----------WKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAAL 71 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~----------gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L 71 (319)
..+.|+|+|++|++|+..+.. +.+||||++.+++..+.||+++++ ++||+|||+|.|.|.+. ..|
T Consensus 27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~k-tlnP~WNE~F~f~v~~~----~~L 101 (157)
T 2fk9_A 27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQK-TNKPTYNEEFCANVTDG----GHL 101 (157)
T ss_dssp EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEEE----CEE
T ss_pred CccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCC-CCCCccCcEEEEEcCCC----CEE
Confidence 357899999999999987622 468999999997666679999775 99999999999999753 689
Q ss_pred EEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEe
Q 020960 72 HVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCIS 140 (319)
Q Consensus 72 ~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~ 140 (319)
.|+|||++. +.+|++||++.|+|++|..+.... .....||.|. ++|+|+|.|+|.
T Consensus 102 ~~~V~D~d~-~~~dd~iG~~~i~l~~l~~~~~~~-------~~~~~W~~L~------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 102 ELAVFHETP-LGYDHFVANCTLQFQELLRTTGAS-------DTFEGWVDLE------PEGKVFVVITLT 156 (157)
T ss_dssp EEEEEECCS-SSSCEEEEEEEEEHHHHHHHHTTC-------SEEEEEEECB------SSCEEEEEEEEC
T ss_pred EEEEEECCC-CCCCCEEEEEEEEHHHhhcccCCC-------CcccEEEECC------CCcEEEEEEEEE
Confidence 999999987 688999999999999999762111 1224589996 379999999985
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=153.16 Aligned_cols=118 Identities=15% Similarity=0.258 Sum_probs=95.2
Q ss_pred ceEEEEEEEEecCCCCC---CCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRS---SSLWKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~---d~~gk~DPYV~v~ld~--~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|+.. +..++.||||++++.+ ..++||+++++ +.||+|||+|.|.+.... ...|+|+|||
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~--~~~l~i~V~d 78 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQ--ENVLEITLMD 78 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTS--CCEEEEEEEE
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCC-CCCCcccceEEEEecCCC--CCEEEEEEEE
Confidence 57899999999999974 4557899999999975 47889999885 899999999999996432 5789999999
Q ss_pred cCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEe
Q 020960 78 REPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCIS 140 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~ 140 (319)
++. .+|++||++.|+|++|..+.. ...|+.|.. +.+|+|+|.|...
T Consensus 79 ~d~--~~~~~iG~~~i~l~~l~~~~~-----------~~~~~~L~~----~~~g~i~~~le~~ 124 (126)
T 1rlw_A 79 ANY--VMDETLGTATFTVSSMKVGEK-----------KEVPFIFNQ----VTEMVLEMSLEVA 124 (126)
T ss_dssp CCS--SCCEEEEEEEEEGGGSCTTCE-----------EEEEEEETT----TEEEEEEEEEECC
T ss_pred CCC--CCCceeEEEEEEHHHccCCCc-----------EEEEEEcCC----CceEEEEEEEEeC
Confidence 985 369999999999999975432 245888862 4567777766543
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=156.49 Aligned_cols=123 Identities=16% Similarity=0.128 Sum_probs=88.4
Q ss_pred CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCC
Q 020960 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREP 80 (319)
Q Consensus 1 M~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~ 80 (319)
|+.+.|.|+|++|++|.. .+++||||++.. ++.||+++++++.||+|||+|.|.+... ...|+|+|||++
T Consensus 2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~~---~~~kt~~~~~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~d- 71 (131)
T 2cjt_A 2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLKV---QNVKSTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNKG- 71 (131)
T ss_dssp CCCEEEEEEEEEEECSSC---GGGCEEEEEEEE---TTEEEECCCEESSSCEEEEEEEEEECCC---SSEEEEEEEECC-
T ss_pred CcceEEEEEEEEeECCCC---CCCcCeEEEEEe---cCEEEeEecCCCCCceECCEEEEEEeCC---CCeEEEEEEECC-
Confidence 788999999999998852 477999999992 3456666665689999999999999864 467999999998
Q ss_pred CCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceE-------EEEEEEEe
Q 020960 81 IFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGF-------IDVSVCIS 140 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~-------L~lsL~f~ 140 (319)
+.+|++||++.|+|+++........ ......+|.++. .+|+.+|+ +.++++|.
T Consensus 72 -~~~dd~iG~~~i~l~~l~~~~~~~~-----~~~~~~~~~~~~-~~g~~~G~~~p~~~~~~~~~~~~ 131 (131)
T 2cjt_A 72 -LIWDTMVGTVWIPLRTIRQSNEEGP-----GEWLTLDSQAIM-ADSEICGTKDPTFHRILLDAHFE 131 (131)
T ss_dssp -SSCEEEEEEEEEEGGGSCBCSSCCC-----CEEEECBC-----------CCSCCCCCEEEEEEEEC
T ss_pred -CCCCCeEEEEEEEHHHhhhcCCCCc-----cccEEccccccc-CCCcCcceECCCccEEEEEEEeC
Confidence 5899999999999999986542110 122334566554 57777777 88888873
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-20 Score=151.41 Aligned_cols=115 Identities=19% Similarity=0.257 Sum_probs=94.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCeeeEEEEEEe-CCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID----PNNKYCTKIDASGKENPVWRTKFAAVV-DDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld----~~~k~kTkV~k~gg~NPvWNEtF~f~V-~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|+..+..++.||||++++. ...++||+++++ +.||+|||+|.|.+ ....+....|+|+|||
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d 98 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEITLWD 98 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSS-CSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccC-CCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence 46899999999999998888899999999994 346889999886 99999999999994 4332335789999999
Q ss_pred cCCCCCC--CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccce
Q 020960 78 REPIFLR--ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQG 131 (319)
Q Consensus 78 ~~~~~~k--DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G 131 (319)
++. +.+ |++||++.|+|.++.... ...||.|..+++++.+|
T Consensus 99 ~d~-~~~~~~~~lG~~~i~l~~l~~~~------------~~~W~~L~~~~~g~~sg 141 (141)
T 1v27_A 99 QAR-VREEESEFLGEILIELETALLDD------------EPHWYKLQTHDSGPSSG 141 (141)
T ss_dssp BCS-SSSCCBCCCEEEEEEGGGCCCSS------------EEEEEECBCCSSCCCCC
T ss_pred CCC-CcCCCCceEEEEEEEccccCCCC------------CCceEECcccccCCCCC
Confidence 987 565 999999999999987532 24599998766666554
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=152.10 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=90.6
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..++.||||+|++.+ ..++||+++++ +.||+|||+|.|.|....+ ...|+|+|||+
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~-~~~L~i~V~d~ 107 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESDK-DRRLSVEIWDW 107 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGGG-GCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCC-CCCCcCCcEEEEEeccccC-CCEEEEEEEEC
Confidence 467999999999999988888999999999964 46889999986 9999999999999976422 36899999999
Q ss_pred CCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 79 EPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
+. +.+|++||++.|+|.+|.... ...||.|..
T Consensus 108 d~-~~~~~~iG~~~i~l~~l~~~~------------~~~W~~L~~ 139 (149)
T 1a25_A 108 DL-TSRNDFMGSLSFGISELQKAG------------VDGWFKLLS 139 (149)
T ss_dssp CS-SSCCEEEEEEEEEHHHHTTCC------------EEEEEECBC
T ss_pred CC-CCCCCEEEEEEEEHHHhCcCc------------cCCeEEccC
Confidence 87 678999999999999998642 134899975
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=149.72 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=88.3
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEE-eCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAV-VDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~-V~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|+. +..+..||||++++.+ ..++||+++++ +.||+|||+|.|. |....++...|.|+|||
T Consensus 19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d 96 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRK-TRNPTFNEMLVYSGYSKETLRQRELQLSVLS 96 (134)
T ss_dssp TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCS-CSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcC-CCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence 4689999999999996 6678899999999932 46789999885 9999999999999 76432235789999999
Q ss_pred cCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 78 REPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
++. +.+|++||++.|+|.++..+.. ...||.|..
T Consensus 97 ~d~-~~~~~~lG~~~i~l~~l~~~~~-----------~~~W~~L~~ 130 (134)
T 2b3r_A 97 AES-LRENFFLGGITLPLKDFNLSKE-----------TVKWYQLTA 130 (134)
T ss_dssp CCS-SSCCEEEEEEEEEGGGSCTTSC-----------EEEEEECBC
T ss_pred CCC-CCCCcEEEEEEEEhhhccCCCC-----------cceeEECCC
Confidence 997 6789999999999999976421 245899974
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=150.06 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=89.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCeeeEEEEEEeCCC-CCCcceEEEEEEecC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID--PNNKYCTKIDASGKENPVWRTKFAAVVDDS-NFQDAALHVEVYSRE 79 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld--~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~-~lq~~~L~VeV~d~~ 79 (319)
.+.|+|+|++|++|+..+..++.||||++++. ...++||+++++ +.||+|||+|.|.+-.. .+....|.|+|||++
T Consensus 25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d 103 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD 103 (141)
T ss_dssp SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTT-CSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcC-CCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence 56899999999999998888899999999995 346889999874 99999999999985321 122478999999998
Q ss_pred CCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 80 PIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
. +.+|++||++.|+|.+|..+.. ...||.|..
T Consensus 104 ~-~~~~~~iG~~~i~l~~l~~~~~-----------~~~W~~L~~ 135 (141)
T 2d8k_A 104 R-FSRNDPIGEVSIPLNKVDLTQM-----------QTFWKDLKP 135 (141)
T ss_dssp S-SSSCEEEEEEEEETTTSCTTSC-----------EEEEECCEE
T ss_pred C-CCCCcEEEEEEEEhhhhcCCCC-----------ccEEEECcC
Confidence 7 6889999999999999986532 245899986
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-19 Score=146.42 Aligned_cols=98 Identities=21% Similarity=0.259 Sum_probs=84.6
Q ss_pred ceEEEEEEEEecCCCCCCCC-CCCCcEEEEEECC--CCeEEeeecCCCCCCCeeeEEEEEE-eCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSL-WKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAV-VDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~-gk~DPYV~v~ld~--~~k~kTkV~k~gg~NPvWNEtF~f~-V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+.+ ++.||||++++.+ ..++||+++++ +.||+|||+|.|. +....+....|.|+|||+
T Consensus 21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~ 99 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALHFTILSF 99 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcC-CCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence 46899999999999998875 7899999999963 47899999884 9999999999996 765434457899999999
Q ss_pred CCCCCCCceeEEEEEechhhcccc
Q 020960 79 EPIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
+. +.+|++||++.|+|.+|....
T Consensus 100 d~-~~~~~~lG~~~i~l~~l~~~~ 122 (138)
T 1ugk_A 100 DR-FSRDDIIGEVLIPLSGIELSE 122 (138)
T ss_dssp CS-SCCCCCCEEEEEECTTCCCTT
T ss_pred CC-CCCCcEEEEEEEehhHccCCC
Confidence 87 689999999999999997653
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=149.85 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=89.6
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID--PNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREP 80 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld--~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~ 80 (319)
.+.|+|+|++|++|+..+..++.||||++++. ...++||+++++ +.||+|||+|.|.|....+....|+|+|||++.
T Consensus 33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 111 (143)
T 3f04_A 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 111 (143)
T ss_dssp TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCS-CSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcC-CCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence 56899999999999998878899999999994 456889999875 899999999999986532334789999999987
Q ss_pred CCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeE
Q 020960 81 IFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLR 122 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lr 122 (319)
+.+|++||++.|+|.++..+.. ...||.|.
T Consensus 112 -~~~~~~iG~~~i~l~~l~~~~~-----------~~~W~~L~ 141 (143)
T 3f04_A 112 -FSKHDIIGEFKVPMNTVDFGHV-----------TEEWRDLQ 141 (143)
T ss_dssp -SSCCEEEEEEEEEGGGCCTTSC-----------EEEEEECB
T ss_pred -CCCCceEEEEEEEHHHccCCCC-----------cceEEECc
Confidence 6799999999999999976432 23588886
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-19 Score=150.12 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=90.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID--PNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREP 80 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld--~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~ 80 (319)
.+.|+|+|++|++|+..+..+..||||++++. ...++||+++++ +.||+|||+|.|.|....+....|.|+|||++.
T Consensus 41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 119 (152)
T 1rsy_A 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 119 (152)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCC-CCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence 56899999999999998888899999999995 346889999886 899999999999886432234789999999987
Q ss_pred CCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 81 IFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
+.+|++||++.|+|.++..+.. ...||.|..
T Consensus 120 -~~~~~~iG~~~i~l~~l~~~~~-----------~~~W~~L~~ 150 (152)
T 1rsy_A 120 -FSKHDIIGEFKVPMNTVDFGHV-----------TEEWRDLQS 150 (152)
T ss_dssp -SSCCEEEEEEEEEGGGCCCSSC-----------EEEEEECBC
T ss_pred -CCCCcEEEEEEEEchhccCCCC-----------cceEEECCC
Confidence 6789999999999999965431 235888863
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=150.23 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=92.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
...|.|+|++|++|. ..+++||||+++ .++.||+++++++.||+|||+|.|.|... ...|+|+|||++ +
T Consensus 13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~---~~~~kt~~~~~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~d--~ 81 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK---VQNVESTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNKG--L 81 (167)
T ss_dssp CCEEEEEEEEEECSS---CGGGCEEEEEEE---ETTEEEECCCEESSSCEEEEEEEEECCCT---TSEEEEEEEECC--S
T ss_pred eEEEEEEEEEEECCC---CCCCCCeEEEEE---ecceEEEEecCCCCCCCCCCEEEEEeeCC---CCEEEEEEEECC--C
Confidence 458999999999884 257899999999 23457777765689999999999999864 467999999998 5
Q ss_pred CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceE-------EEEEEEEee
Q 020960 83 LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGF-------IDVSVCISE 141 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~-------L~lsL~f~~ 141 (319)
.+|++||++.|+|+++....... .......+|.+++ .+|+.+|+ |.+.++|..
T Consensus 82 ~~dd~iG~~~i~L~~l~~~~~~g-----~~~~~~~~~~~~~-~~g~~~g~~~p~~~~lll~~~~e~ 141 (167)
T 2cjs_A 82 IWDTMVGTVWIPLRTIRQSNEEG-----PGEWLTLDSQAIM-ADSEICGTKDPTFHRILLDAHFEL 141 (167)
T ss_dssp SCCEEEEEEEEEGGGSCBCSSCC-----CCEEEEEEEEEEE-ETTEEEEEEEEEEEEEEEEEEEEC
T ss_pred CCCceEEEEEEEHHHhcccCcCC-----cccceeeeeeeEc-CCCCCCceEccccceEEEEEEeec
Confidence 79999999999999997654211 0123334666664 46665555 677777754
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=147.77 Aligned_cols=108 Identities=17% Similarity=0.218 Sum_probs=90.8
Q ss_pred ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSS-SLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d-~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|+..+ ..++.||||++++.+. .++||+++++ +.||+|||+|.|.|....++...|.|+|||
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~~L~~~V~d 100 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRD-TVNPLYDETLRYEIPESLLAQRTLQFSVWH 100 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSS-CSSCEEEEEEEEECCSTTGGGCEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCC-CCCCcEeeEEEEEeChhHhCceEEEEEEEE
Confidence 468999999999999887 4678999999999642 4789999875 899999999999997754445689999999
Q ss_pred cCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 78 REPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
++. +.+|++||++.|+|.++..+... ..||.|..
T Consensus 101 ~d~-~~~~~~iG~~~i~l~~l~~~~~~-----------~~W~~L~~ 134 (148)
T 3fdw_A 101 HGR-FGRNTFLGEAEIQMDSWKLDKKL-----------DHCLPLHG 134 (148)
T ss_dssp ECG-GGCEEEEEEEEEEHHHHHHHCCS-----------EEEEECBC
T ss_pred CCC-CcCCcEEEEEEEEcccccccCCc-----------cceEECcC
Confidence 987 67899999999999999875421 35899985
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=142.63 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=79.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCeeeEEEEEEeCC-CCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID----PNNKYCTKIDASGKENPVWRTKFAAVVDD-SNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld----~~~k~kTkV~k~gg~NPvWNEtF~f~V~~-~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|+..+..++.||||++++. ...++||+++++ +.||+|||+|.|.+.. ..+....|+|+|||
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d 95 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEITLWD 95 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccC-CCCCccccEEEEccCCHHHhcCCeEEEEEEE
Confidence 46899999999999998888899999999993 347889999875 8999999999999532 22335789999999
Q ss_pred cCCCCCC--CceeEEEEEechhhccc
Q 020960 78 REPIFLR--ERLLGTATIALKEFLAK 101 (319)
Q Consensus 78 ~~~~~~k--DklIG~a~IpL~dL~~~ 101 (319)
++. +.+ |++||++.|+|.++...
T Consensus 96 ~d~-~~~~~~~~lG~~~i~l~~l~~~ 120 (129)
T 2bwq_A 96 QAR-VREEESEFLGEILIELETALLD 120 (129)
T ss_dssp C--------CEEEEEEEEEGGGCCCS
T ss_pred CCc-CcCcCCceeEEEEEEccccCCC
Confidence 986 565 99999999999998764
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-19 Score=147.58 Aligned_cols=107 Identities=22% Similarity=0.209 Sum_probs=86.8
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP--N--NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~--~--~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..+ .||||++++.+ . .++||+++++ +.||+|||+|.|.|....++...|+|+|||+
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~ 100 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK-TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNS 100 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCS-CSSCEEEEEEEECCCHHHHHHCEEEEEEEEC
T ss_pred CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCC-CCCCCcCceEEEEecHHHhCcCEEEEEEEEC
Confidence 568999999999999988888 99999999943 2 6789999885 9999999999999864322345899999999
Q ss_pred CCCCC--CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 79 EPIFL--RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 79 ~~~~~--kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
+. +. .|++||++.|+|.++...... ..||.|..
T Consensus 101 d~-~~~~~~~~iG~~~i~l~~~~~~~~~-----------~~W~~L~~ 135 (142)
T 2dmg_A 101 GG-FLSKDKGLLGKVLVALASEELAKGW-----------TQWYDLTE 135 (142)
T ss_dssp CC-SSCCSCCCCEEEEEECCCSTTTTCB-----------CCBCCCBC
T ss_pred CC-ccccCCcEEEEEEEecccccccccc-----------cceeeccC
Confidence 86 44 357999999999998764321 23888985
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-19 Score=150.01 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=88.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC-------------CeEEeeecCCCCCCCeeeEEEEEE-eCCCCCCc
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN-------------NKYCTKIDASGKENPVWRTKFAAV-VDDSNFQD 68 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~-------------~k~kTkV~k~gg~NPvWNEtF~f~-V~~~~lq~ 68 (319)
.+.|+|+|++|++|+..+..++.||||++++.+. .++||+++++ +.||+|||+|.|. +....+..
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~l~~ 95 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQLMK 95 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHHTT
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCC-CCCCCCCCEEEECCcCHHHccC
Confidence 3579999999999999988889999999999753 2578999875 8999999999997 64322224
Q ss_pred ceEEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 69 AALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 69 ~~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
..|.|+|||++. +.+|++||++.|+|.++...... ..||.|..
T Consensus 96 ~~l~i~V~d~d~-~~~~~~lG~~~i~l~~l~~~~~~-----------~~W~~L~~ 138 (142)
T 1rh8_A 96 KTLEVTVWDYDR-FSSNDFLGEVLIDLSSTSHLDNT-----------PRWYPLKE 138 (142)
T ss_dssp CEEEEEEEEECS-SSCEEEEEEEEEETTSCGGGTTC-----------CEEEECBC
T ss_pred CEEEEEEEECCC-CCCCceEEEEEEeccccccCCCC-----------CeEEECCc
Confidence 789999999997 67899999999999999764321 35899975
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-19 Score=149.68 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=81.1
Q ss_pred ceEEEEEEEEecCCCCC-C------CCCCCCcEEEEEECC--CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEE
Q 020960 3 KIWVEVCLISARGLRRS-S------SLWKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHV 73 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~-d------~~gk~DPYV~v~ld~--~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~V 73 (319)
.+.|+|+|++|++|+.. + .++..||||+|++.+ ..++||+++++ +.||+|||+|.|.|....++...|+|
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~ 103 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK-TQKPVFEERYTFEIPFLEAQRRTLLL 103 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCS-CSSCCCCBCCEECCCHHHHHHSEEEE
T ss_pred CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccC-CCCCeEeeeEEEEeChHHhccCEEEE
Confidence 56899999999999974 2 245799999999963 46889999875 89999999999998653223468999
Q ss_pred EEEecCCCCCCCceeEEEEEechhhccc
Q 020960 74 EVYSREPIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 74 eV~d~~~~~~kDklIG~a~IpL~dL~~~ 101 (319)
+|||++. +.+|++||++.|+|.+|...
T Consensus 104 ~V~d~d~-~~~~~~iG~~~i~l~~l~~~ 130 (147)
T 2enp_A 104 TVVDFDK-FSRHCVIGKVSVPLCEVDLV 130 (147)
T ss_dssp EEECCST-TCCSCCCEEEEEETTTSCTT
T ss_pred EEEECCC-CcCCcEEEEEEEechhcCCC
Confidence 9999987 68899999999999999654
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-19 Score=153.92 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=83.7
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC---C--CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP---N--NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~---~--~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|...+..++.||||++++.+ . .++||+++++ ++||+|||+|.|.|....+....|.|+|||
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~-tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d 120 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDA-SDTLVFNEVFWVSMSYPALHQKTLRVDVCT 120 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEEC-CSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCC-CCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence 468999999999999988888999999999965 2 3789999875 899999999999987533335789999999
Q ss_pred cCCCCCCCceeEEEEEechhhcc
Q 020960 78 REPIFLRERLLGTATIALKEFLA 100 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~ 100 (319)
++. +.+|++||++.|+|.++..
T Consensus 121 ~d~-~~~~d~iG~~~i~l~~l~~ 142 (155)
T 2z0u_A 121 TDR-SHLEECLGGAQISLAEVCR 142 (155)
T ss_dssp ECT-TSCEEEEEEEEEECTTSCT
T ss_pred CCC-CCCCcEEEEEEEEHHHccC
Confidence 987 6899999999999999963
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=145.64 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=86.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID---PNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE 79 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld---~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~ 79 (319)
.+.|.|+|++|++ .+..+..||||++++. ...++||+|+++ ++||+|||+|.|.|....++...|.|+|||++
T Consensus 25 ~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~-tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d 100 (138)
T 1wfm_A 25 KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEELPTATLTLTLRTCD 100 (138)
T ss_dssp TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcC-CCCCcCCceEEEEecHHHcCCCEEEEEEEECC
Confidence 5789999999994 4566889999999994 234689999875 89999999999999765555678999999998
Q ss_pred CCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 80 PIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
. +.+|++||++.|+|.++..... ...|+.|..
T Consensus 101 ~-~~~dd~lG~~~i~l~~l~~~~~-----------~~~W~~L~~ 132 (138)
T 1wfm_A 101 R-FSRHSVAGELRLGLDGTSVPLG-----------AAQWGELKT 132 (138)
T ss_dssp S-SCTTSCSEEEEEESSSSSSCTT-----------CCEEEECCC
T ss_pred C-CCCCcEEEEEEEEcccccCccc-----------ccceeeCcC
Confidence 7 6899999999999999964321 134899985
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=157.44 Aligned_cols=127 Identities=18% Similarity=0.183 Sum_probs=104.1
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE 79 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~--~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~ 79 (319)
..+.|+|+|++|++|...+..+++||||++++.+ ..+++|+++++ +.||+|||+|.|.|....+....|+|+|||++
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d 95 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD 95 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence 3578999999999999988888999999999964 46889999875 89999999999998754334578999999998
Q ss_pred CCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCC--CccceEEEEEEEEee
Q 020960 80 PIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNS--NKPQGFIDVSVCISE 141 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~s--gKp~G~L~lsL~f~~ 141 (319)
. +.+|++||++.|+|.++..+.. ...|+.|..... .+..|+|++++++.+
T Consensus 96 ~-~~~~~~lG~~~i~l~~l~~~~~-----------~~~w~~L~~~~~~~~~~~G~i~l~l~~~p 147 (284)
T 2r83_A 96 R-FSKHDIIGEFKVPMNTVDFGHV-----------TEEWRDLQSAEKEEQEKLGDICFSLRYVP 147 (284)
T ss_dssp S-SSCCCEEEEEEEEGGGCCCSSC-----------EEEEEECBCCSSCCCCCCCEEEEEEEEET
T ss_pred C-CCCCceeEEEEEcchhcccCCc-----------ceeEEEeeccccccccccccEEEEEEecC
Confidence 7 6789999999999999976431 235888875322 346899999999874
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=145.36 Aligned_cols=98 Identities=22% Similarity=0.351 Sum_probs=83.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEE-eCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAV-VDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~-V~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|+..+..++.||||++++.+ ..++||+++++ +.||+|||+|.|. +....++...|+|+|||
T Consensus 28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d 106 (142)
T 2chd_A 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN-TRNPVWNETLQYHGITEEDMQRKTLRISVCD 106 (142)
T ss_dssp GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCS-CSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCC-CCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence 468999999999999998888999999999965 36889999885 9999999999998 65422223689999999
Q ss_pred cCCCCCCCceeEEEEEechhhcccc
Q 020960 78 REPIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
++. +.+|++||++.|+|.+|..+.
T Consensus 107 ~d~-~~~d~~iG~~~i~l~~l~~~~ 130 (142)
T 2chd_A 107 EDK-FGHNEFIGETRFSLKKLKANQ 130 (142)
T ss_dssp ECT-TSCEEEEEEEEEEGGGCCTTC
T ss_pred CCC-CCCCcEEEEEEEEHHHcCCCC
Confidence 987 678999999999999998653
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=141.46 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=82.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..++.||||++++.+. .++||+++++ +.||+|||+|.|.|....+....|.|+|||+
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~ 93 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR-NLNPIFNESFAFDIPTEKLRETTIIITVMDK 93 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSS-CSSCEEEEEEEEECCGGGGGGEEEEEEEEEC
T ss_pred CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccC-CCCCcCcceEEEECChhhcCceEEEEEEEEC
Confidence 5689999999999999888888999999999643 5789999875 8999999999999876544447899999999
Q ss_pred CCCCCCCceeEEEEEechhhcc
Q 020960 79 EPIFLRERLLGTATIALKEFLA 100 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~ 100 (319)
+. +.+|++||++.|+|+++..
T Consensus 94 ~~-~~~~~~lG~~~i~l~~~~~ 114 (138)
T 3n5a_A 94 DK-LSRNDVIGKIYLSWKSGPG 114 (138)
T ss_dssp CS-SSCCEEEEEEEESSSSCHH
T ss_pred CC-CCCCcEEEEEEEccccCCh
Confidence 87 6789999999999997543
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-18 Score=145.18 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=101.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
-.|+|+|++|++|+ ++.|||+++.+. ..++||+++++++.||+|||+|+|.+....++.+.|+|.|||+++ ++
T Consensus 21 msL~V~l~~a~~Lp-----g~~Dp~akv~FR-g~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~-v~ 93 (144)
T 3l9b_A 21 MALIVHLKTVSELR-----GRADRIAKVTFR-GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK-VF 93 (144)
T ss_dssp EEEEEEEEEEESCC-----SCEEEEEEEEET-TEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT-TS
T ss_pred EEEEEEEEEecCCC-----CCCCCeEEEEEe-ccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc-cc
Confidence 46999999999998 468999999994 679999999856899999999999998765668999999999998 78
Q ss_pred CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeec
Q 020960 84 RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~ 142 (319)
+|++||++.|+|.+|...... ..+-.|.+.++....++|.|+|+|.+.
T Consensus 94 ~nrlIG~~~i~Lq~lv~~~~l-----------~l~~~LvD~n~~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 94 SNKLIGTFRMVLQKVVEENRV-----------EVSDTLIDDNNAIIKTSLSMEVRYQAA 141 (144)
T ss_dssp CCEEEEEEEEESHHHHHHSEE-----------EEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred CCCEEEEEEEEhHHhccCCeE-----------EEeecccCCCCCccccEEEEEEEecCC
Confidence 999999999999999987531 235667763333346899999999875
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-18 Score=143.97 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=89.1
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
..+.|.|+|++|++|+..+ .+..||||++.+.+ ..++||+++++ +.||+|||+|.|.|....++ ..|.|+|||
T Consensus 25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~-~~L~i~V~d 101 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPD-CRDPAFHEHFFFPVQEEDDQ-KRLLVTVWN 101 (153)
T ss_dssp SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTT-CSSCEEEEEEEEECCGGGTT-SEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCC-CCCCccccEEEEecccHHhC-CEEEEEEEe
Confidence 3578999999999999987 58899999999943 36789999875 99999999999999543332 459999999
Q ss_pred cCCCCCC-CceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCC
Q 020960 78 REPIFLR-ERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSN 127 (319)
Q Consensus 78 ~~~~~~k-DklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sg 127 (319)
++. +.+ |++||++.|+|.+|..... ....||.|..+..|
T Consensus 102 ~d~-~~~~d~~lG~~~i~l~~l~~~~~----------~~~~W~~L~~~~~g 141 (153)
T 3fbk_A 102 RAS-QSRQSGLIGCMSFGVKSLLTPDK----------EISGWYYLLGEHLG 141 (153)
T ss_dssp CCS-SGGGCEEEEEEEEEHHHHTC--C----------CEEEEEECBCTTGG
T ss_pred CCC-CCCCCcEEEEEEEEHHHhcCCCC----------ccccEEECCChhhc
Confidence 986 566 9999999999999975211 12359999863333
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-18 Score=144.12 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=81.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..+..||||++++.+. .++||+++++ +.||+|||+|.|.|....++...|.|+|||+
T Consensus 24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~ 102 (159)
T 1tjx_A 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 102 (159)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecC-CCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence 5689999999999999988889999999999642 4789999875 8999999999999975434456899999999
Q ss_pred CCCCCCCceeEEEEEechhh
Q 020960 79 EPIFLRERLLGTATIALKEF 98 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL 98 (319)
+. +.+|++||++.|+|.++
T Consensus 103 d~-~~~~~~iG~~~i~l~~~ 121 (159)
T 1tjx_A 103 DK-IGKNDAIGKVFVGYNST 121 (159)
T ss_dssp CS-SSCCEEEEEEEEETTCC
T ss_pred CC-CCCCceEEEEEECCCCC
Confidence 97 67899999999999954
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-18 Score=143.10 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=76.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP--N--NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~--~--~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..++.||||+|++.+ . .++||+++++ +.||+|||+|.|.|....++...|+|+|||+
T Consensus 29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~ 107 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVEFLVLDS 107 (153)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccC-CCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence 468999999999999988888899999999943 2 2679999885 9999999999999977545457899999999
Q ss_pred CCCCCCCceeEEEEEechh
Q 020960 79 EPIFLRERLLGTATIALKE 97 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~d 97 (319)
+. +.+|++||++.|+|.+
T Consensus 108 d~-~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 108 ER-GSRNEVIGRLVLGATA 125 (153)
T ss_dssp CT-TSCCEEEEEEEESTTC
T ss_pred CC-CCCCcEEEEEEECCCC
Confidence 87 6889999999999988
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-18 Score=148.28 Aligned_cols=105 Identities=22% Similarity=0.227 Sum_probs=87.6
Q ss_pred ceEEEEEEEEecCCCCCCC-CCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEE-
Q 020960 3 KIWVEVCLISARGLRRSSS-LWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVY- 76 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~-~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~- 76 (319)
.+.|+|+|++|++|+..+. .+..||||+|++.+. .++||+++++ +.||+|||+|.|.|... ...|.|+||
T Consensus 29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~---~~~L~~~V~~ 104 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK-TLDPLYQQSLVFDESPQ---GKVLQVIVWG 104 (171)
T ss_dssp TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEECSSCCT---TEEEEEEEEE
T ss_pred CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCC-CCCCCCCcEEEEEecCC---CCEEEEEEEE
Confidence 4689999999999999885 688999999999643 3789999875 89999999999998653 588999999
Q ss_pred ecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 77 SREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
|++. +.+|++||++.|+|.++..+.. ...||.|..
T Consensus 105 d~d~-~~~d~~iG~~~i~l~~l~~~~~-----------~~~W~~L~~ 139 (171)
T 2q3x_A 105 DYGR-MDHKCFMGVAQILLEELDLSSM-----------VIGWYKLFP 139 (171)
T ss_dssp ECST-TCSSEEEEEEEECGGGSCTTSC-----------EEEEEECBC
T ss_pred cCCC-CCCCCEEEEEEEEHHHcccCCC-----------cceeEECCC
Confidence 8886 6789999999999999975432 245999985
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-18 Score=144.06 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=83.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..++.||||++++.+ ..++||+++++ +.||+|||+|.|.|....+....|.|+|||+
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~ 114 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLAKKSLDISVWDY 114 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccC-CCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence 568999999999999988888999999999975 36889999875 9999999999999975434457899999999
Q ss_pred CCCCCCCceeEEEEEechhhc
Q 020960 79 EPIFLRERLLGTATIALKEFL 99 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~ 99 (319)
+. +.+|++||++.|+|.++.
T Consensus 115 d~-~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 115 DI-GKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp CS-SSCCEEEEEEEEETTCCH
T ss_pred CC-CCCCcEEEeEEEecccCC
Confidence 87 678999999999999864
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=153.76 Aligned_cols=128 Identities=20% Similarity=0.275 Sum_probs=100.8
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWI--DPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE 79 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~l--d~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~ 79 (319)
..+.|.|+|++|++|+..+..++.||||++++ ++..++||+++++ ++||+|||+|.|.|....++...|+|+|||++
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d 96 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFD 96 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence 35789999999999999888889999999999 3567889999875 89999999999998654344568999999998
Q ss_pred CCCCCCceeEEEEEe-chhhcccccCCCCCCCCCccceEEEEeEeCC-CCccceEEEEEEEEee
Q 020960 80 PIFLRERLLGTATIA-LKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN-SNKPQGFIDVSVCISE 141 (319)
Q Consensus 80 ~~~~kDklIG~a~Ip-L~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~-sgKp~G~L~lsL~f~~ 141 (319)
. +.+|++||++.|+ |.++...... ...|+.|.... ..+..|+|++++.+.+
T Consensus 97 ~-~~~~~~iG~~~i~~l~~~~~~~~~----------~~~w~~L~~~~~~~~~~G~i~vsl~y~~ 149 (296)
T 1dqv_A 97 R-FSRHDLIGQVVLDNLLELAEQPPD----------RPLWRDILEGGSEKADLGELNFSLCYLP 149 (296)
T ss_dssp S-SSCCCEEEEEECCCTTGGGSSCSS----------CCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred C-CCCCceEEEEEeccccccccCCcc----------ceeeeccccccccccccceEEEEEEecc
Confidence 7 6899999999996 5555542211 12377776422 2345799999999865
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=156.24 Aligned_cols=122 Identities=17% Similarity=0.230 Sum_probs=100.0
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
.+.|+|+|++|++|+..+..++.||||+++++ ..+++|+++++ +.||+|||+|.|.+... ....|+|+|||++. +
T Consensus 386 ~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~-~~~~~T~~~~~-t~nP~w~e~f~f~~~~~--~~~~l~~~v~d~d~-~ 460 (510)
T 3jzy_A 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMG-SQSYTTRTIQD-TLNPKWNFNCQFFIKDL--YQDVLCLTLFDRDQ-F 460 (510)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-TEEEECCCCSS-CSSCEEEEEEEEEESCT--TTCEEEEEEEECCS-S
T ss_pred CceEEEEeceeecCCCCCCCCCCCeEEEEEEC-CeeccCCccCC-CCCCccCceEEEEecCC--CCCEEEEEEEeCCC-C
Confidence 46899999999999999888999999999995 56889999885 89999999999999754 24779999999997 6
Q ss_pred CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEe
Q 020960 83 LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCIS 140 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~ 140 (319)
.+|++||++.|+|.++..+..... ....|+.|. ++..|+|+|.+.+.
T Consensus 461 ~~~d~lG~~~~~l~~l~~~~~~~~-------~~~~~~~l~----~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 461 SPDDFLGRTEIPVAKIRTEQESKG-------PMTRRLLLH----EVPTGEVWVRFDLQ 507 (510)
T ss_dssp SSCCEEEEEEEEHHHHHHHHHHHC-------SCCEEEECB----SSSSCEEEEEEEEE
T ss_pred CCCCceEEEEEEHHHhccccCCCC-------ceeeeecCC----CCCCceEEEEEEEE
Confidence 889999999999999987643211 012366665 45779998888763
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-16 Score=160.52 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=100.5
Q ss_pred ceEEEEEEEEecCCCCCCC--CCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEE
Q 020960 3 KIWVEVCLISARGLRRSSS--LWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVY 76 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~--~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~ 76 (319)
...|+|+|++|++|+..+. .+..||||+|++.+ ..++||+++++++.||+|||+|.|.|.... ...|+|+||
T Consensus 496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~e--l~~L~~~V~ 573 (624)
T 1djx_A 496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD--LALVRFMVE 573 (624)
T ss_dssp CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGG--GCEEEEEEE
T ss_pred ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCC--CCEEEEEEE
Confidence 5789999999999998763 57899999999964 268899999876699999999999997653 368999999
Q ss_pred ecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCcc--ceEEEEEEEEe
Q 020960 77 SREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKP--QGFIDVSVCIS 140 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp--~G~L~lsL~f~ 140 (319)
|++. +.+|++||++.|+|.+|..+. .++.|+. ..|++ .++|.|.|.|.
T Consensus 574 D~D~-~~~dd~iG~~~ipl~~L~~G~--------------r~v~L~d-~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 574 DYDS-SSKNDFIGQSTIPWNSLKQGY--------------RHVHLLS-KNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp ECCS-SSCCEEEEEEEEEGGGBCCEE--------------EEEEEEC-TTSCEEEEEEEEEEEEEE
T ss_pred EcCC-CCCCceeEEEEEEHHHcCCCc--------------EEEeCCC-CCcCCCCceEEEEEEEEE
Confidence 9987 689999999999999997653 3788986 45554 57888888875
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=152.48 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=89.8
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
.+.|+|+|++|++|+. |.+++.||||+|++.+ +++||+|+++ ++||+|||+|.|.+... .....|+|+|||++. +
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~-~~~kTkvik~-tlNP~Wne~f~f~~~~~-~~~~~L~~~V~D~D~-~ 467 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG-QEFRTGVVWN-NNNPRWTDKMDFENVLL-STGGPLRVQVWDADY-G 467 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT-EEEECCCBCS-CSSCBCCCCEEEEEEET-TTCCCEEEEEEECCS-S
T ss_pred ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC-EeeeeeeecC-CCCCCCCeEEEEEEecC-CCCCEEEEEEEECCC-C
Confidence 4689999999999998 8889999999999964 5799999986 89999999999986421 125789999999997 6
Q ss_pred CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEe
Q 020960 83 LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCIS 140 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~ 140 (319)
.+|++||++.++|.. +. ...|+.|. +|+|+|.+.+.
T Consensus 468 ~~dD~LG~~~~~L~~---g~------------~~~~~~l~-------~G~l~~~~~~~ 503 (540)
T 3nsj_A 468 WDDDLLGSCDRSPHS---GF------------HEVTCELN-------HGRVKFSYHAK 503 (540)
T ss_dssp SCCEEEEEEEECCCS---EE------------EEEEEECS-------SSEEEEEEEEE
T ss_pred CCCCEEEEEEEEeeC---Cc------------EEEEEEcC-------CeEEEEEEEEE
Confidence 789999999999872 21 12355553 48999888864
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-15 Score=136.65 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=81.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP--N--NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~--~--~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|...+..+..||||++++.. . .++||+++++ +.||+|||+|.|.|....++...|.|+|||+
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~ 227 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 227 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence 467999999999999988888999999999953 2 4679999875 8999999999999976544456899999999
Q ss_pred CCCCCCCceeEEEEEechhh
Q 020960 79 EPIFLRERLLGTATIALKEF 98 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL 98 (319)
+. +.+|++||++.|+|..+
T Consensus 228 d~-~~~~~~iG~~~i~l~~~ 246 (284)
T 2r83_A 228 DK-IGKNDAIGKVFVGYNST 246 (284)
T ss_dssp CS-SSCCCEEEEEEEETTCC
T ss_pred CC-CCCCcEEEEEEECCCCC
Confidence 87 68999999999999864
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=152.19 Aligned_cols=95 Identities=19% Similarity=0.293 Sum_probs=83.0
Q ss_pred ceEEEEEEEEecCCCC---CCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRR---SSSLWKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~---~d~~gk~DPYV~v~ld~--~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
.+.|+|+|++|++|+. .+..+++||||+|++.+ ..++||+|+++ ++||+|||+|.|.|... +...|+|+|||
T Consensus 17 ~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~-tlNPvWNEtF~F~v~~~--~~~~L~~~V~D 93 (749)
T 1cjy_A 17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPN--QENVLEITLMD 93 (749)
T ss_dssp CEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTT--SCCBCEEEEEE
T ss_pred ccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcC-CCCCeeeeEEEEEecCC--CCCEEEEEEEE
Confidence 5789999999999998 66678899999999974 46889999985 89999999999999864 24789999999
Q ss_pred cCCCCCCCceeEEEEEechhhcccc
Q 020960 78 REPIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
++. +. |++||++.|+|.+|..+.
T Consensus 94 ~D~-~~-ddfIG~v~I~L~~L~~g~ 116 (749)
T 1cjy_A 94 ANY-VM-DETLGTATFTVSSMKVGE 116 (749)
T ss_dssp CCS-SS-CEEEEEECCBSTTSCTTC
T ss_pred CCC-CC-CceeEEEEEEHHHcCCCC
Confidence 997 56 999999999999997553
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-15 Score=139.02 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=82.7
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C--CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID--P--NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld--~--~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..+..||||++++. + ..++||+++++ +.||+|||+|.|.|....++...|.|+|||+
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~ 229 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAVVDY 229 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence 46899999999999998888889999999995 3 26789999875 8999999999999876544446799999999
Q ss_pred CCCCCCCceeEEEEEechhhcc
Q 020960 79 EPIFLRERLLGTATIALKEFLA 100 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~ 100 (319)
+. +.+|++||++.|+|.++..
T Consensus 230 d~-~~~~~~iG~~~i~l~~~~~ 250 (296)
T 1dqv_A 230 DC-IGHNEVIGVCRVGPEAADP 250 (296)
T ss_dssp CS-SSCCEEEEECCCSSCTTCH
T ss_pred CC-CCCCceEEEEEECCccCCc
Confidence 87 6899999999999998754
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.4e-16 Score=155.12 Aligned_cols=120 Identities=12% Similarity=0.119 Sum_probs=18.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCC---CCCeeeEEEEEEeCCCCCCcceEEEEEEec-
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGK---ENPVWRTKFAAVVDDSNFQDAALHVEVYSR- 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg---~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~- 78 (319)
.+.|+|+|++|++|+..+ ||||++++++..+.||+++++ + .||+|||+|.|.+... ...|.|+|||+
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~k-t~~glnP~WnE~F~f~~~~~---~~~L~v~V~d~~ 80 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPR-SASGDTVFWGEHFEFNNLPA---VRALRLHLYRDS 80 (483)
T ss_dssp EECC---------------------------------------------------CCEECC-------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeC-CCCCCCCccccEEEEecCCC---ccEEEEEEEecC
Confidence 467999999999998765 999999998776789999875 6 9999999999987543 37799999995
Q ss_pred C--CCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCC----------------------C-ccceEE
Q 020960 79 E--PIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNS----------------------N-KPQGFI 133 (319)
Q Consensus 79 ~--~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~s----------------------g-Kp~G~L 133 (319)
+ ..+.+|++||++.|+|+++..+... ..||.|..... + +..|+|
T Consensus 81 d~~~~~~~d~~lG~v~i~l~~l~~~~~~-----------~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~l 149 (483)
T 3bxj_A 81 DKKRKKDKAGYVGLVTVPVATLAGRHFT-----------EQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAV 149 (483)
T ss_dssp --------------------------CC-----------EECC-------------------------------------
T ss_pred CccccCCCCceEEEEEEEHHHhcCCCCC-----------CeEEECCCCCCccccccccccccccccccccccCCCCCceE
Confidence 2 1147899999999999999865321 34788853221 1 346999
Q ss_pred EEEEEEeec
Q 020960 134 DVSVCISEE 142 (319)
Q Consensus 134 ~lsL~f~~~ 142 (319)
+|.++|.+.
T Consensus 150 rL~v~~~~~ 158 (483)
T 3bxj_A 150 RLKARYQTM 158 (483)
T ss_dssp -CEEEEEEC
T ss_pred EEEEEeeee
Confidence 999999765
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-13 Score=144.44 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=91.5
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC-----CeEEeeecCCCCCCCeeeE-EEEEE-eCCCCCCcceEEEEE
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN-----NKYCTKIDASGKENPVWRT-KFAAV-VDDSNFQDAALHVEV 75 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~-----~k~kTkV~k~gg~NPvWNE-tF~f~-V~~~~lq~~~L~VeV 75 (319)
...|+|+|++|++|... +.||||+|++.+. .++||+|+++++.||+||| +|.|. |.... ...|+|+|
T Consensus 724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pe--la~Lrf~V 797 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT--LASLRIAA 797 (885)
T ss_dssp CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGG--GCEEEEEE
T ss_pred ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCC--cCEEEEEE
Confidence 35799999999999853 5899999999641 3579999987789999999 69998 75442 36899999
Q ss_pred EecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCcc--ceEEEEEEEEee
Q 020960 76 YSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKP--QGFIDVSVCISE 141 (319)
Q Consensus 76 ~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp--~G~L~lsL~f~~ 141 (319)
||++ |++||++.|+|+.|..+.. +..|+. ..|++ .++|.|.|.+..
T Consensus 798 ~D~d-----ddfiG~~~lpL~~L~~GyR--------------~vpL~~-~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 798 FEEG-----GKFVGHRILPVSAIRSGYH--------------YVCLRN-EANQPLCLPALLIYTEASD 845 (885)
T ss_dssp EETT-----TEEEEEEEEETTTCCCEEE--------------EEEEEC-TTSCEEEEEEEEEEEEEEE
T ss_pred EcCC-----ccEEeeEEEEHHHcCCCce--------------EEEecC-CCCCccCceEEEEEEEEEe
Confidence 9965 6899999999999987642 577876 55554 788999888875
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-13 Score=141.17 Aligned_cols=113 Identities=20% Similarity=0.249 Sum_probs=91.5
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC------CeEEeeecCCCCCCCeeeEE-EEEE-eCCCCCCcceEEEE
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN------NKYCTKIDASGKENPVWRTK-FAAV-VDDSNFQDAALHVE 74 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~------~k~kTkV~k~gg~NPvWNEt-F~f~-V~~~~lq~~~L~Ve 74 (319)
...|+|+|++|++|... +.||||+|++.+. .++||+|++++|.||+|||+ |.|. |.... ...|+|+
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pe--la~Lrf~ 722 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPD--LAVVRII 722 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGG--GCEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCC--ccEEEEE
Confidence 36899999999999853 5899999999642 46799999887899999998 9998 76543 3689999
Q ss_pred EEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCcc--ceEEEEEEEEee
Q 020960 75 VYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKP--QGFIDVSVCISE 141 (319)
Q Consensus 75 V~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp--~G~L~lsL~f~~ 141 (319)
|||++ |++||++.|+|+.|..+.. +..|+. .+|++ .++|.|.|.+..
T Consensus 723 V~D~d-----ddfiG~~~ipL~~L~~GyR--------------~vpL~~-~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 723 VSEEN-----GKFIGHRVMPLDGIKPGYR--------------HVPLRN-ESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp EEETT-----SCEEEEEEEESTTCCCEEE--------------EEEEEC-TTSCEEEEEEEEEEEEEEE
T ss_pred EEecC-----CCeeeEEEEEHHHcCCcce--------------EEEEeC-CCCCCCCceEEEEEEEEEe
Confidence 99964 6899999999999988742 677886 56655 367877777765
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.44 E-value=8.2e-13 Score=139.77 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=89.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----CCeEEee-ecCCCCCCCeeeE-EEEE-EeCCCCCCcceEEEE
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP-----NNKYCTK-IDASGKENPVWRT-KFAA-VVDDSNFQDAALHVE 74 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~-----~~k~kTk-V~k~gg~NPvWNE-tF~f-~V~~~~lq~~~L~Ve 74 (319)
.+.|+|+|++|++|.. .+.||||+|++.+ ..++||+ ++++++.||+||| +|.| .|.... ...|+|+
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~e--l~~Lr~~ 750 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE--LASLRVA 750 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG--GCEEEEE
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCC--ccEEEEE
Confidence 4689999999999985 3589999999953 1468999 8887789999999 7999 886543 3689999
Q ss_pred EEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCc--cceEEEEEEEEe
Q 020960 75 VYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNK--PQGFIDVSVCIS 140 (319)
Q Consensus 75 V~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgK--p~G~L~lsL~f~ 140 (319)
|||++ |++||++.|+|++|..+. .++.|+. ..|. ..+.|.|.|.+.
T Consensus 751 V~D~d-----~d~iG~~~ipl~~L~~G~--------------r~v~L~~-~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 751 VMEEG-----NKFLGHRIIPINALNSGY--------------HHLCLHS-ESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EEETT-----TEEEEEEEEEGGGBCCEE--------------EEEEEEC-TTCCEEEEEEEEEEEEEE
T ss_pred EEEeC-----CCccceEeeehhhcCCCc--------------EEEeccC-CCCCCCCceEEEEEEEEE
Confidence 99975 699999999999998653 2678876 4454 347777777764
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.3e-13 Score=135.91 Aligned_cols=97 Identities=21% Similarity=0.225 Sum_probs=84.5
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
...|+|+|++|++|...+..++.||||++.+.+ ..++||+++++ ++||+|||+|.|.+..... ...|.|+|||+
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~-tlnP~wne~f~f~~~~~~~-~~~L~v~v~d~ 248 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKS-SLNPEWNETFRFQLKESDK-DRRLSVEIWDW 248 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSS-CSSCEEEEEEEEECCSTTT-TCEEEEEEEEC
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCcccccccccccccc-ccCCCccceeeeecccCCc-cceeeeEEeec
Confidence 467999999999999999889999999999932 36789999886 8999999999999976432 46799999999
Q ss_pred CCCCCCCceeEEEEEechhhcccc
Q 020960 79 EPIFLRERLLGTATIALKEFLAKY 102 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~ 102 (319)
+. +.+|++||++.|+|+++....
T Consensus 249 d~-~~~dd~iG~~~i~l~~l~~~~ 271 (674)
T 3pfq_A 249 DL-TSRNDFMGSLSFGISELQKAG 271 (674)
T ss_dssp CS-SSCCEECCBCCCBTTHHHHCC
T ss_pred cc-ccccccccccccchhhhccCC
Confidence 97 789999999999999998753
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-10 Score=94.33 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=87.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeE---EeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKY---CTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE 79 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~---kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~ 79 (319)
...|+|.+.++..-.-.......||||.|.++..... +|-+.|..|..|+|||+|.-.|.+. ..|.|.|++..
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G----r~l~i~Vfh~a 80 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG----RVIQIVLMRAA 80 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT----CEEEEEEEEET
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC----EEEEEEEEcCC
Confidence 4578999988875332221234899999999754333 6634455699999999999999885 88999999876
Q ss_pred CCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEe
Q 020960 80 PIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCIS 140 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~ 140 (319)
. ++|+.++|.+.+|..+...++ .. ...|+.|. |+|+|++.+++.
T Consensus 81 ~-----~fvAn~tV~~edL~~~c~~~~-----g~-~e~WvdLe------P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 81 E-----EPVSEVTVGVSVLAERCKKNN-----GK-AEFWLDLQ------PQAKVLMSVQYF 124 (126)
T ss_dssp T-----EEEEEEEEEHHHHHHHHHTTT-----TE-EEEEEECB------SSCEEEEEEEEE
T ss_pred C-----CeeeEEEEEHHHHHhhhccCC-----Cc-eEEEEecc------cCcEEEEEEEEe
Confidence 3 999999999999997743211 12 23588885 799999999986
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.3e-10 Score=94.63 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=87.4
Q ss_pred ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCCCe---EEe-eecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRSS-SLWKLQWFAVGWIDPNNK---YCT-KIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d-~~gk~DPYV~v~ld~~~k---~kT-kV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
...|+|.+.+++-..-.. .....||||.|.++.... .+| ...+ .|..|+|||+|.-.|.+. ..|.|.|++
T Consensus 9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~Kk-kT~~P~Wne~Fd~~V~~G----r~l~i~Vfh 83 (138)
T 2enj_A 9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKK-PTMYPPWDSTFDAHINKG----RVMQIIVKG 83 (138)
T ss_dssp CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEE-EEECCCSSSEEEECCCSS----CEEEEEEEC
T ss_pred CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccC-CCCCccccceEeeeEECC----eEEEEEEEc
Confidence 456899998887644322 112489999999975433 666 4433 489999999999999885 889999997
Q ss_pred cCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeec
Q 020960 78 REPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~ 142 (319)
... ++|+.++|.|.+|..+...++ .. ...|+.|. |+|+|++.|++.-+
T Consensus 84 ~a~-----~fVAn~tV~~edL~~~ck~~~-----g~-~e~WvdLe------P~Gkl~v~i~~~~e 131 (138)
T 2enj_A 84 KNV-----DLISETTVELYSLAERCRKNN-----GK-TEIWLELK------PQGRMLMNARYFLE 131 (138)
T ss_dssp SSC-----SCCEEEEEESHHHHHHHHHTT-----TC-EEEEEECB------SSCEEEEEEEECCC
T ss_pred CCC-----CeeeEEEEEHHHHHhhhccCC-----Cc-eEEEEecc------cCcEEEEEEEEEEe
Confidence 652 999999999999997632211 12 23588885 79999999999733
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0041 Score=53.80 Aligned_cols=128 Identities=11% Similarity=0.045 Sum_probs=88.9
Q ss_pred ceEEEEEEEEecCCCCC-CCCCCCC--cEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCC-----CCcceEEEE
Q 020960 3 KIWVEVCLISARGLRRS-SSLWKLQ--WFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN-----FQDAALHVE 74 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~-d~~gk~D--PYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~-----lq~~~L~Ve 74 (319)
.+.+||.|.+++-=... ...+..+ .||++.+..=+.++|.+.+ +.+|.+|.+-.+.|+... +++..|.||
T Consensus 17 EnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lE 94 (156)
T 2yrb_A 17 ENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLE 94 (156)
T ss_dssp CEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEE
T ss_pred CcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEE
Confidence 46899999998731110 0012234 4555555556788999886 689999999999886532 356789999
Q ss_pred EEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCC--ccceEEEEEEEEeecCCC
Q 020960 75 VYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSN--KPQGFIDVSVCISEEREE 145 (319)
Q Consensus 75 V~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sg--Kp~G~L~lsL~f~~~~~~ 145 (319)
++.... ..-+.||+++|+|++|+..... . .-...|.. ..+ ..-|.|.+.|++.-..++
T Consensus 95 Lhqa~g--~~~~tla~~~I~l~~lLe~~~~--------i--~g~~~L~g-~~g~~~~~G~LeywiRL~~Pi~~ 154 (156)
T 2yrb_A 95 VHQAYS--TEYETIAACQLKFHEILEKSGR--------I--FCTASLIG-TKGDIPNFGTVEYWFRLRVSGPS 154 (156)
T ss_dssp EEEECS--SCEEEEEEEEECCSHHHHCCSC--------E--EEEEEECB-SSSCCTTSEEEEEEEEEEECCCC
T ss_pred EEEeeC--CCceEEEEEEEEhHHhhCcCCc--------e--EEEEEEEc-CCCCcceEEEEEEEEEEecccCC
Confidence 988753 4667999999999999976321 1 11335554 455 468999999999876554
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.27 Score=44.58 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=43.3
Q ss_pred CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC---CCCceeEEEEEechh
Q 020960 37 NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF---LRERLLGTATIALKE 97 (319)
Q Consensus 37 ~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~---~kDklIG~a~IpL~d 97 (319)
..++|.|.- ...+|.|+|+|.+.|.....+..-|.|+++++.... ..++.+|.+-+||-+
T Consensus 77 se~~S~V~Y-Hnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 77 SEYKSVIYY-QVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp SCEECCCCT-TCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred eeEEEEEEE-cCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 455676654 378999999999999876566788999998764211 123578888888754
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=92.93 E-value=1.6 Score=47.80 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=58.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-C-C---CeEEeeecCCCCCCCeeeEEEEEEeCCCCCC-cceEEEEEE
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID-P-N---NKYCTKIDASGKENPVWRTKFAAVVDDSNFQ-DAALHVEVY 76 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld-~-~---~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq-~~~L~VeV~ 76 (319)
.+.+.|+|+++.++.-. .....+-||++.+. + + ...+|+.+ ...++.|||.+.|.+.-..+. ...|.|.||
T Consensus 354 ~~~f~v~i~~~~~~n~~-~~~~~~~~V~~~l~hG~~~L~~~~~T~~~--~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~ 430 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVN-IRDIDKIYVRTGIYHGGEPLCDNVNTQRV--PCSNPRWNEWLNYDIYIPDLPRAARLCLSIC 430 (1091)
T ss_dssp CSEEEEEEEEESCCCCC-CSSCCCCCEEEEEESSSCSSCCEECCCCC--CTTSCEEEEEEEEEEEGGGCCTTCEEEEEEC
T ss_pred CCCEEEEEEEecCCCCC-ccccceEEEEEEEEECCEEccCceecccc--CCCCCCCCeeEEecCccccCChhcEEEEEEE
Confidence 35789999999988632 22246789998884 2 2 22334432 256888999999887533322 478999999
Q ss_pred ecCCCC---CCCceeEEEEEechhhc
Q 020960 77 SREPIF---LRERLLGTATIALKEFL 99 (319)
Q Consensus 77 d~~~~~---~kDklIG~a~IpL~dL~ 99 (319)
+..... .+...||.+.++|=|..
T Consensus 431 ~~~~~~~~~~~~~~lg~~n~~lfd~~ 456 (1091)
T 3hhm_A 431 SVKGRKGAKEEHCPLAWGNINLFDYT 456 (1091)
T ss_dssp CCCCCC-------CCEEEEEESBCTT
T ss_pred EecCccCcccccceeEEeeeeeEccC
Confidence 865310 12346777777766543
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=0.63 Score=50.26 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=48.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-CC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCC-cceEEEEEE
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID-PN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQ-DAALHVEVY 76 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld-~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq-~~~L~VeV~ 76 (319)
...|.|+|.++.++... ...+-||++.+. +. ...+|+.+. ...++.|||.+.|.+.-..+. ...|.|+||
T Consensus 216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~-~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~ 291 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVN-VCSEPVWKQRLEFDISVCDLPRMARLCFALY 291 (940)
T ss_dssp CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEE-SCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceeccccc-CCCCcccceEEEcccccccCCcccEEEEEEE
Confidence 35789999999988643 346889888884 22 122343222 257899999999877533222 478999999
Q ss_pred ecC
Q 020960 77 SRE 79 (319)
Q Consensus 77 d~~ 79 (319)
+..
T Consensus 292 ~~~ 294 (940)
T 2wxf_A 292 AVV 294 (940)
T ss_dssp EEC
T ss_pred Eec
Confidence 853
|
| >2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=83.13 E-value=1 Score=49.44 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=47.8
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-CC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCC-cceEEEEEE
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID-PN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQ-DAALHVEVY 76 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld-~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq-~~~L~VeV~ 76 (319)
...+.|+|.++.+|... ...+-||++.+. +. ...+|+.+. ...++.|||.+.|.+.-..+. ...|.|+||
T Consensus 352 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~-~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~ 427 (1092)
T 2y3a_A 352 NNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEIS-GKNDHIWNEQLEFDINICDLPRMARLCFAVY 427 (1092)
T ss_dssp CSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCC-SSSCCCCCEEEEEEEESSSCCTTCEEEEECC
T ss_pred CCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceeccccc-CCCCCccceeEEeCCccccCChhcEEEEEEE
Confidence 35789999999888643 235777776663 22 122343322 357899999998887543332 578999999
Q ss_pred ecC
Q 020960 77 SRE 79 (319)
Q Consensus 77 d~~ 79 (319)
+..
T Consensus 428 ~~~ 430 (1092)
T 2y3a_A 428 AVL 430 (1092)
T ss_dssp CC-
T ss_pred Eec
Confidence 863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 319 | ||||
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 3e-06 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 8e-06 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 9e-06 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 0.001 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 0.001 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 0.003 |
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (102), Expect = 3e-06
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 5/101 (4%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDAS---GKENPVWRTKFA-AVV 61
+ V ++ A+ L + + P+ K P W F + V
Sbjct: 16 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75
Query: 62 DDSNFQDAALHVEVYSREPIFL-RERLLGTATIALKEFLAK 101
F++ L + ++ + + LG I L+ L
Sbjct: 76 HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 116
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.5 bits (99), Expect = 8e-06
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNN----KYCTKIDASGKENPVWRTKFAAVV 61
+ V +I L + F W+ P+ K+ T+I NP + +F +
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQI-KKKTLNPEFNEEFFYDI 75
Query: 62 DDSNFQDAALHVEVYSREPIFLRERLLGTATI 93
S+ +L + V+ + +G +
Sbjct: 76 KHSDLAKKSLDISVWDYDI-GKSNDYIGGCQL 106
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 42.4 bits (99), Expect = 9e-06
Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 17/133 (12%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN 65
+EV L+SA+GL + L + + ++ + G P W F V +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT-TPEWNETFIFTVSEGT 70
Query: 66 FQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN 125
+ L +++ ++ + +G ATI L+ G +Y + K
Sbjct: 71 TE---LKAKIFDKDV-GTEDDAVGEATIPLEPVF----------VEGSIPPTAYNVVKD- 115
Query: 126 SNKPQGFIDVSVC 138
+ +G I V++
Sbjct: 116 -EEYKGEIWVALS 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.001
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 18/141 (12%)
Query: 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAV 60
++ + V ISA+ + + + +D T+ + +P W+ +
Sbjct: 5 KSQLQITV--ISAKLKENKKNWFGPSPYVEVTVD-GQSKKTEK-CNNTNSPKWKQPLTVI 60
Query: 61 VDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQ 120
V + LH V+S + + LLGTA + + E L + E
Sbjct: 61 VTPVSK----LHFRVWSHQT-LKSDVLLGTAALDIYETLKSN--------NMKLEEVVVT 107
Query: 121 LRKKNSNKP-QGFIDVSVCIS 140
L+ +P + D+S+C+
Sbjct: 108 LQLGGDKEPTETIGDLSICLD 128
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.3 bits (83), Expect = 0.001
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 6 VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYC----TKIDASGKENPVWRTKFAAVV 61
+ V ++ A+ L++ + + N K T I NP + F+ V
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEV 85
Query: 62 DDSNFQDAALHVEVYSREPIFLRERLLGTATIALKE 97
Q + V V + + +G +
Sbjct: 86 PFEQIQKVQVVVTVLDYDK-IGKNDAIGKVFVGYNS 120
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.3 bits (80), Expect = 0.003
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 27/137 (19%)
Query: 1 MGKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKE----------- 49
+G + + + + AR L + F ++ P + + E
Sbjct: 17 LGNLIIHI--LQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 50 -NPVWRTKFA-AVVDDSNFQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSE 107
NP W + L V V+ + F LG I L
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR-FSSNDFLGEVLIDLSST--------- 124
Query: 108 GSRSGIEEVGSYQLRKK 124
Y L+++
Sbjct: 125 --SHLDNTPRWYPLKEQ 139
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 319 | |||
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.92 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.88 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.88 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.86 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.84 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.84 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.8 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.79 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.77 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.76 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.76 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.75 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.73 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.71 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.7 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.7 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.68 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.67 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.63 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.62 | |
| d2yrba1 | 142 | Fantom {Human (Homo sapiens) [TaxId: 9606]} | 96.96 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 96.49 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=9.5e-25 Score=180.14 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=106.6
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIF 82 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~ 82 (319)
.++|+|+|++|++|+..+..+++||||++++++ .+++|+++++++.||+|||+|.|.|.+. ...|+|+|||++. +
T Consensus 9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~t~~~~~~~~nP~Wne~f~f~v~~~---~~~L~v~V~d~d~-~ 83 (136)
T d1wfja_ 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVSEG---TTELKAKIFDKDV-G 83 (136)
T ss_dssp EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-CEEECCCCTTCCSSCEEEEEEEEEEESS---CCEEEEEECCSSS-C
T ss_pred cEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee-eeEEEEEEecCCCcEEEeeEEEEEEcCc---cceEEEEEEEecC-C
Confidence 579999999999999999889999999999964 5778888887789999999999999875 4669999999987 6
Q ss_pred CCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeecC
Q 020960 83 LRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEER 143 (319)
Q Consensus 83 ~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~~ 143 (319)
.+|++||+++|+|.+|..... ....|+.|.+ +++.+|+|+|+|+|.+..
T Consensus 84 ~~d~~iG~~~i~L~~l~~~~~----------~~~~~~~l~~--~~~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 84 TEDDAVGEATIPLEPVFVEGS----------IPPTAYNVVK--DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp TTTCCSEEEEEESHHHHHHSE----------EEEEEEEEEE--TTEEEEEEEEEEEEEECC
T ss_pred CCCCEEEEEEEEhHHhcccCC----------cCcEEEEecC--CCccCEEEEEEEEEEeCC
Confidence 789999999999999976532 2245888875 778899999999998753
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=8.3e-23 Score=166.54 Aligned_cols=120 Identities=20% Similarity=0.222 Sum_probs=100.6
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI 81 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~ 81 (319)
+.+.|+|+|++|++|+..+..+++||||+++++ .++++|+++++ +.||+|||+|.|.+.+. ...|.|+|||++.
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~-~~~~~T~~~~~-t~nP~wne~f~f~v~~~---~~~L~i~V~d~~~- 77 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELG-NDRLQTHTVYK-NLNPEWNKVFTFPIKDI---HDVLEVTVFDEDG- 77 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET-TEEEECCCCSS-CSSCCCCEEEEEEESCT---TCEEEEEEEEEET-
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcC-CeEEEEEeeCC-ceeEEEEEEEEEEEecc---CceeEEEEEEccC-
Confidence 357999999999999999888999999999995 56889999875 89999999999999875 4789999999886
Q ss_pred CCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEEEe
Q 020960 82 FLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVCIS 140 (319)
Q Consensus 82 ~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~f~ 140 (319)
+.+|++||++.|+|+++..+.. .|+.|..+ ..++.+|+|+|++.+.
T Consensus 78 ~~~d~~lG~~~i~l~~l~~~~~-------------~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 78 DKPPDFLGKVAIPLLSIRDGQP-------------NCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp TEEEEECCBCEEEGGGCCSSCC-------------EECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CcCcceEEEEEEEHHHCCCCCc-------------eEEEccccCCCCceeEEEEEEEEEE
Confidence 6789999999999999865421 25555432 3566789999999875
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.2e-22 Score=163.93 Aligned_cols=126 Identities=20% Similarity=0.232 Sum_probs=100.4
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCC
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPI 81 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~ 81 (319)
++..|+|+|++|++|++.+..+++||||++.+++ ++++|++++ ++.||+|||.|.|.+... ..|+|+|||++.
T Consensus 4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~-~~~kT~v~~-~t~nP~wne~f~f~~~~~----~~l~~~V~d~d~- 76 (133)
T d2nq3a1 4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCN-NTNSPKWKQPLTVIVTPV----SKLHFRVWSHQT- 76 (133)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCS-SCSSCEEEEEEEEEECTT----CEEEEEEEECCS-
T ss_pred cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC-eEEeeEEEE-ecccEEEcceEEEEEEec----ceeEEEEEEccC-
Confidence 4689999999999999988888999999999964 578999976 589999999999999764 679999999997
Q ss_pred CCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeC-CCCccceEEEEEEEEe
Q 020960 82 FLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKK-NSNKPQGFIDVSVCIS 140 (319)
Q Consensus 82 ~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~-~sgKp~G~L~lsL~f~ 140 (319)
+.+|++||++.|+|.++....... ......++.|... ...+..|+|+|.|...
T Consensus 77 ~~~d~~iG~~~i~L~~l~~~~~~~------~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~ 130 (133)
T d2nq3a1 77 LKSDVLLGTAALDIYETLKSNNMK------LEEVVVTLQLGGDKEPTETIGDLSICLDGL 130 (133)
T ss_dssp SSCCEEEEEEEEEHHHHHHHTTTE------ESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred CCCCceEEEEEEEHHHhhhhcCCc------eeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence 789999999999999998764422 1223446666652 2335679999888754
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.86 E-value=1.7e-21 Score=161.59 Aligned_cols=120 Identities=18% Similarity=0.262 Sum_probs=99.2
Q ss_pred CceEEEEEEEEecCCCCCC-----------CCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcce
Q 020960 2 GKIWVEVCLISARGLRRSS-----------SLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAA 70 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d-----------~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~ 70 (319)
-.+.|+|+|++|++|+..+ ..+.+||||++.++.....+|+++++ +.||+|||+|.|.+.+. ..
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~-t~~P~Wne~f~f~v~~~----~~ 78 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCNG----RK 78 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEEE----CE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcC-CCCccCccEEEEEEecC----Cc
Confidence 4689999999999998642 23568999999997666678888764 89999999999999753 78
Q ss_pred EEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeec
Q 020960 71 LHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 71 L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~ 142 (319)
|+|+|||++. +.+|++||+++|+|+++..+... ....|+.|. ++|+|++.|.|.+.
T Consensus 79 l~i~V~d~~~-~~~d~~iG~~~i~l~~l~~~~~~---------~~~~w~~L~------p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 79 IELAVFHDAP-IGYDDFVANCTIQFEELLQNGSR---------HFEDWIDLE------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEEECCS-SSSCEEEEEEEEEHHHHTSTTCS---------EEEEEEECB------SSCEEEEEEEEEEE
T ss_pred eEEEEEEecC-CCCceeEEEEEEEHHHhhhcCCc---------ceeEEEeCC------CCcEEEEEEEEEeC
Confidence 9999999987 68999999999999999876532 123588885 57999999999865
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=6.6e-21 Score=154.42 Aligned_cols=119 Identities=16% Similarity=0.262 Sum_probs=96.7
Q ss_pred ceEEEEEEEEecCCCCC---CCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 3 KIWVEVCLISARGLRRS---SSLWKLQWFAVGWIDP--NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~---d~~gk~DPYV~v~ld~--~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
...|+|+|++|++|+.. +..++.||||++++.+ .+++||+++++ +.||+|||+|.|.+... +...|.|+|||
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~-t~nP~wne~f~f~i~~~--~~~~L~v~V~d 78 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPN--QENVLEITLMD 78 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTT--SCCEEEEEEEE
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCC-CccceeceeeeecccCc--ccCcEEEEEEE
Confidence 57899999999999874 2357899999999964 36789999765 89999999999999764 24689999999
Q ss_pred cCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEee
Q 020960 78 REPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISE 141 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~ 141 (319)
++. .+|++||++.|+|++|..+.. ...||.|.. ..+|+|++.|.+.+
T Consensus 79 ~d~--~~d~~lG~~~i~L~~l~~~~~-----------~~~~~~L~~----~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 79 ANY--VMDETLGTATFTVSSMKVGEK-----------KEVPFIFNQ----VTEMVLEMSLEVAS 125 (126)
T ss_dssp CCS--SCCEEEEEEEEEGGGSCTTCE-----------EEEEEEETT----TEEEEEEEEEECCC
T ss_pred CCC--CCCCeEEEEEEEHHHccCCCe-----------EEEEEEccC----CCeEEEEEEEEEEe
Confidence 984 689999999999999975432 235899953 35699999998764
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=3.6e-20 Score=152.22 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=93.4
Q ss_pred ceEEEEEEEEecCCCCC--CCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEE
Q 020960 3 KIWVEVCLISARGLRRS--SSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVY 76 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~--d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~ 76 (319)
...|+|+|++|++|... +..+++||||+|++.+ .++++|+++++++.||+|||+|.|.+.... ...|+|+||
T Consensus 3 p~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~--~~~L~~~V~ 80 (131)
T d1qasa2 3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD--LALVRFMVE 80 (131)
T ss_dssp CEEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG--GCEEEEEEE
T ss_pred cEEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcch--hceEEEEEE
Confidence 36799999999999643 4457899999999943 467899988877789999999999987642 467999999
Q ss_pred ecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCcc--ceEEEEEEEEe
Q 020960 77 SREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKP--QGFIDVSVCIS 140 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp--~G~L~lsL~f~ 140 (319)
|++. +.+|++||++.|+|+++..+. .++.|+. .+|+. .++|.+.|.+.
T Consensus 81 D~d~-~~~d~~iG~~~i~l~~l~~g~--------------~~~~L~~-~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 81 DYDS-SSKNDFIGQSTIPWNSLKQGY--------------RHVHLLS-KNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp ECCT-TTCCEEEEEEEEEGGGBCCEE--------------EEEEEEC-TTSCEEEEEEEEEEEEEE
T ss_pred EecC-CCCCcEEEEEEEEEeccCCCC--------------EEEECCC-CCcCCCCCCEEEEEEEEE
Confidence 9987 678999999999999987542 3788876 45554 55666666653
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=1.5e-19 Score=148.03 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=89.7
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecC
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWID--PNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSRE 79 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld--~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~ 79 (319)
..+.|+|+|++|++|+..+..+..||||++.+. ..+++||+++++ +.||+|||+|.|.|....++...|.|+|||++
T Consensus 16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~ 94 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFD 94 (130)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence 457899999999999988888899999999994 346789999875 89999999999998765444577999999998
Q ss_pred CCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 80 PIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 80 ~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
. +.+|++||++.|++...+..... ....||.|..
T Consensus 95 ~-~~~d~~iG~~~i~~~~~l~~~~~---------~~~~W~~L~~ 128 (130)
T d1dqva1 95 R-FSRHDLIGQVVLDNLLELAEQPP---------DRPLWRDILE 128 (130)
T ss_dssp S-SSCCCEEEEEECCCTTGGGSSCS---------SCCCCEECBC
T ss_pred C-CCCCceEEEEEECchhhhhcCCC---------CCcEEEeccc
Confidence 7 68999999999987654433221 1234899974
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=3.6e-19 Score=145.80 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=88.6
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID----PNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld----~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
...|.|+|++|++|+..+..+..||||++++. ...++||+++++ +.||+|||+|.|.+.... ....|.|+|||+
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~-~~~~L~i~V~d~ 91 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESD-KDRRLSVEIWDW 91 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGG-GGCEEEEEEEEC
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecC-CCCCccceEEEEEeEccc-cCCEEeEEEEec
Confidence 56899999999999998888889999999993 246789999875 899999999999987642 245799999999
Q ss_pred CCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 79 EPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
+. +.+|++||++.|+|+++..+. . ..||.|..
T Consensus 92 d~-~~~d~~iG~~~i~l~~l~~~~----------~--~~W~~L~~ 123 (132)
T d1a25a_ 92 DL-TSRNDFMGSLSFGISELQKAG----------V--DGWFKLLS 123 (132)
T ss_dssp CS-SSCCEEEEEEEEEHHHHTTCC----------E--EEEEECBC
T ss_pred CC-CCCCcEeEEEEEeHHHcCCCC----------C--CeEEECCC
Confidence 87 688999999999999986432 1 24899974
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=4.9e-19 Score=147.03 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=88.8
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCC
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWID--PNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREP 80 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld--~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~ 80 (319)
...|+|+|++|++|+..+..+..||||++++. ...+++|+++++ +.||+|||+|.|.|....+....|.|+|||++.
T Consensus 33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~-t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~ 111 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 111 (143)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEecc-ccCcceeeeeEEEEEeeccCCceEEEEEEEcCC
Confidence 46899999999999988877889999999993 456789999875 899999999999986543335789999999987
Q ss_pred CCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeE
Q 020960 81 IFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLR 122 (319)
Q Consensus 81 ~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lr 122 (319)
+.++++||++.|+|.++..+.. ...||.|.
T Consensus 112 -~~~~~~iG~~~i~L~~~~~~~~-----------~~~W~~L~ 141 (143)
T d1rsya_ 112 -FSKHDIIGEFKVPMNTVDFGHV-----------TEEWRDLQ 141 (143)
T ss_dssp -SSCCEEEEEEEEEGGGCCCSSC-----------EEEEEECB
T ss_pred -CCCCcEEEEEEEEchhccCCCC-----------CccEEeCC
Confidence 6889999999999999865421 23589886
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.5e-18 Score=143.63 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=82.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEecCCCCC
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSREPIFL 83 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~~~~~~ 83 (319)
..|.|+|++|++|+..+ +.||||++.++ +.+.+|++++ +.||+|||+|.|.+.+. ...|.|+|||++. .
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~-~~k~~T~~~k--~~nP~Wne~f~f~v~~~---~~~L~v~V~d~~~--~ 70 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ-NVKSTTIAVR--GSQPSWEQDFMFEINRL---DLGLTVEVWNKGL--I 70 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEET-TEEEECCCEE--SSSCEEEEEEEEEECCC---SSEEEEEEEECCS--S
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEeC-CEEEEEEEec--CCCCeEEEEEEEeeccc---cceEEEEEEeCCC--c
Confidence 57999999999999865 58999999995 6788998875 46999999999999876 4779999999874 5
Q ss_pred CCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 84 RERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 84 kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
+|++||++.|+|+++....... ...||.|..
T Consensus 71 ~d~~lG~~~I~L~~l~~~~~~~---------~~~W~~L~~ 101 (128)
T d2cjta1 71 WDTMVGTVWIPLRTIRQSNEEG---------PGEWLTLDS 101 (128)
T ss_dssp CEEEEEEEEEEGGGSCBCSSCC---------CCEEEECBC
T ss_pred CCcceEEEEEEehhhccCCCCC---------CCeeEECCc
Confidence 8999999999999997654321 124888854
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=5e-18 Score=140.42 Aligned_cols=97 Identities=21% Similarity=0.230 Sum_probs=81.3
Q ss_pred ceEEEEEEEEecCCCCCCCCCC-CCcEEEEEEC--CCCeEEeeecCCCCCCCeeeEEEEEE-eCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWK-LQWFAVGWID--PNNKYCTKIDASGKENPVWRTKFAAV-VDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk-~DPYV~v~ld--~~~k~kTkV~k~gg~NPvWNEtF~f~-V~~~~lq~~~L~VeV~d~ 78 (319)
...|+|+|++|++|+..+..+. .||||++.+. ...++||+++++ +.||+|||+|.|. +....++...|+|+|||.
T Consensus 21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~ 99 (138)
T d1ugka_ 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALHFTILSF 99 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeC-CCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence 4689999999999998776654 7999999994 456789999874 8999999999997 544334567899999998
Q ss_pred CCCCCCCceeEEEEEechhhccc
Q 020960 79 EPIFLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~ 101 (319)
+. +.+|++||++.|+|+++...
T Consensus 100 d~-~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 100 DR-FSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp CS-SCCCCCCEEEEEECTTCCCT
T ss_pred CC-CCCCcEEEEEEEEcccccCC
Confidence 87 78999999999999998543
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=2.2e-19 Score=147.84 Aligned_cols=107 Identities=20% Similarity=0.194 Sum_probs=86.5
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC-------------CeEEeeecCCCCCCCeeeEEEEEEeCC-CCCCcc
Q 020960 4 IWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN-------------NKYCTKIDASGKENPVWRTKFAAVVDD-SNFQDA 69 (319)
Q Consensus 4 ~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~-------------~k~kTkV~k~gg~NPvWNEtF~f~V~~-~~lq~~ 69 (319)
+.|+|+|++|++|+..+..+..||||++++.+. .++||+++++ +.||+|||+|.|.+-. ..+...
T Consensus 18 ~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHHTTC
T ss_pred CEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcC-CCCceeEEEEEEeeecccccCCC
Confidence 579999999999999888889999999999432 2357888875 8999999999997432 223356
Q ss_pred eEEEEEEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 70 ALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 70 ~L~VeV~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
.|.|+|||++. +.+|++||++.|+|+++...... ..||.|..
T Consensus 97 ~L~i~V~d~d~-~~~~~~lG~~~i~L~~l~~~~~~-----------~~W~~L~~ 138 (142)
T d1rh8a_ 97 TLEVTVWDYDR-FSSNDFLGEVLIDLSSTSHLDNT-----------PRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECS-SSCEEEEEEEEEETTSCGGGTTC-----------CEEEECBC
T ss_pred EEEEEEEEecC-CCCCeeeEEEEEEhHHcCCCCCc-----------eEEEECcC
Confidence 89999999987 68899999999999999765321 34999985
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.2e-17 Score=135.39 Aligned_cols=99 Identities=19% Similarity=0.257 Sum_probs=78.2
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEE-eCCCCCCcceEEEEEE
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAV-VDDSNFQDAALHVEVY 76 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~-V~~~~lq~~~L~VeV~ 76 (319)
....|+|+|++|++|...+..+..||||++.+.+ ..++||+++++ +.||+|||+|.|. +....++...|.|+||
T Consensus 12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~f~~~~~~~l~~~~L~i~v~ 90 (125)
T d2bwqa1 12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEITLW 90 (125)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcC-CCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence 3578999999999999887778899999999932 35689999874 8999999999996 5544344678999999
Q ss_pred ecCCC-CCCCceeEEEEEechhhccc
Q 020960 77 SREPI-FLRERLLGTATIALKEFLAK 101 (319)
Q Consensus 77 d~~~~-~~kDklIG~a~IpL~dL~~~ 101 (319)
|.+.. ..++++||++.|+|+++...
T Consensus 91 d~~~~~~~~~~~iG~~~i~l~~~~~~ 116 (125)
T d2bwqa1 91 DQARVREEESEFLGEILIELETALLD 116 (125)
T ss_dssp EC-------CEEEEEEEEEGGGCCCS
T ss_pred ECCCCCCCCCeeEEEEEEEchhcCCC
Confidence 98752 13456999999999998754
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2e-17 Score=136.77 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=86.5
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC---CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN---NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~---~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
....|.|+|++|++|.. .+..||||++.+.+. .+++|+++++ +.||+|||+|.|.|....+....|.|+|||.
T Consensus 24 ~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~-~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~ 99 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEELPTATLTLTLRTC 99 (138)
T ss_dssp TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred CCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECC-CCCceEeeeEEEEeeehhccceEEEEEEeee
Confidence 35689999999999953 356899999999643 3578998875 8999999999999976555668899999999
Q ss_pred CCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEe
Q 020960 79 EPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRK 123 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr 123 (319)
+. +.+|++||++.|+|.++..... ...|++|+.
T Consensus 100 ~~-~~~~~~iG~~~i~L~~l~~~~~-----------~~~W~~L~~ 132 (138)
T d1wfma_ 100 DR-FSRHSVAGELRLGLDGTSVPLG-----------AAQWGELKT 132 (138)
T ss_dssp CS-SCTTSCSEEEEEESSSSSSCTT-----------CCEEEECCC
T ss_pred cc-cccceeeeEEEEEhHHccCCCC-----------ceEeEeCCC
Confidence 87 6889999999999999864322 134999974
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=5.7e-17 Score=132.43 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=82.1
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDP----NNKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~----~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
..+.|+|+|++|++|...+..+..||||++++.+ ..++||+++++ +.||+|||+|.|.|....++...|.|+||+
T Consensus 13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~v~v~~ 91 (137)
T d2cm5a1 13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLAKKSLDISVWD 91 (137)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcC-CCCCccceEEEEEeEHHHccccEEEEEeee
Confidence 3568999999999999887778899999999842 36779999875 899999999999997654556789999999
Q ss_pred cCCCCCCCceeEEEEEechhhc
Q 020960 78 REPIFLRERLLGTATIALKEFL 99 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL~ 99 (319)
.+. +.+|++||++.|+|.++.
T Consensus 92 ~~~-~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 92 YDI-GKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp CCS-SSCCEEEEEEEEETTCCH
T ss_pred CCC-CCCCCEEEEEEeCccccC
Confidence 886 689999999999998654
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=7.4e-17 Score=135.98 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=81.2
Q ss_pred CceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEe
Q 020960 2 GKIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYS 77 (319)
Q Consensus 2 ~~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d 77 (319)
..+.|.|+|++|++|+..+..+..||||++.+.+. .++||++++ ++.||+|||+|.|.|....++...|.|+||+
T Consensus 23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d 101 (157)
T d1uowa_ 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQIQKVQVVVTVLD 101 (157)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceeccccc-CCCCcccCCeEEEEecHHHcCccEEEEEEcc
Confidence 35789999999999998887788999999999542 345899876 5899999999999997755556789999999
Q ss_pred cCCCCCCCceeEEEEEechhh
Q 020960 78 REPIFLRERLLGTATIALKEF 98 (319)
Q Consensus 78 ~~~~~~kDklIG~a~IpL~dL 98 (319)
.+. +.++++||++.|+|.++
T Consensus 102 ~~~-~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 102 YDK-IGKNDAIGKVFVGYNST 121 (157)
T ss_dssp CCS-SSCCCEEEEEEEETTCC
T ss_pred cCC-CCCCceeEEEEEecccC
Confidence 987 78999999999999653
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=7.3e-17 Score=132.92 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=75.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|.|+|++|++|...+..+..||||++.+.+. .++||+++++ +.||+|||+|.|.|....++...|.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~ 92 (138)
T d1w15a_ 14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVEFLVLDS 92 (138)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECC-CCCCeECcEEEEEecHHHhCccEEEEEEEeC
Confidence 5689999999999998887788999999998322 3567888874 8999999999999977656667899999999
Q ss_pred CCCCCCCceeEEEEEechhh
Q 020960 79 EPIFLRERLLGTATIALKEF 98 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL 98 (319)
+. +.++++||++.|+|.+.
T Consensus 93 ~~-~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 93 ER-GSRNEVIGRLVLGATAE 111 (138)
T ss_dssp CT-TSCCEEEEEEEESTTCC
T ss_pred CC-CCCCCEEEEEEEcchhC
Confidence 87 68999999999999764
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=2.3e-16 Score=129.04 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=85.3
Q ss_pred EEEEEE--EEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 5 WVEVCL--ISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 5 ~LeVtV--iSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.|+|+| +.+..++. ..+.+||||+|.+++. .+++|++.++ ++||+|||+|.|.|.+. +.|.|+|||+
T Consensus 4 ~~~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kk-T~nP~WnE~F~~~v~~~----~~l~i~V~d~ 76 (123)
T d1bdya_ 4 FLRISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKP-TMYPEWKSTFDAHIYEG----RVIQIVLMRA 76 (123)
T ss_dssp EEEEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSC-CBCCCTTCEEEEECCTT----CEEEEEEEEE
T ss_pred eEEEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCC-CCCcccceEEEEEEccc----cEEEEEEEEc
Confidence 345555 44444443 3467899999999542 3456777664 99999999999999874 6799999986
Q ss_pred CCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCccceEEEEEEEEeec
Q 020960 79 EPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKPQGFIDVSVCISEE 142 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp~G~L~lsL~f~~~ 142 (319)
+ |+++|.+.|.|.+|.......+ .....|+.|+ ++|+|+++++|..+
T Consensus 77 d-----d~~~g~~~i~l~~l~~~~~~~~------~~~~~W~~L~------~~Gkl~l~v~~f~e 123 (123)
T d1bdya_ 77 A-----EDPMSEVTVGVSVLAERCKKNN------GKAEFWLDLQ------PQAKVLMCVQYFLE 123 (123)
T ss_dssp T-----TEEEEEEEEEHHHHHHHHHTTT------TEEEEEEECB------SSCEEEEEEEEEEC
T ss_pred c-----ccccCccEEehhheeeccccCC------CcccEEEeCC------CCEEEEEEEEEecC
Confidence 4 5899999999999987654432 2334688885 67999999999753
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2e-15 Score=123.36 Aligned_cols=110 Identities=21% Similarity=0.302 Sum_probs=80.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----CCeEEee-ecCCCCCCCeeeEE-EEE-EeCCCCCCcceEEEEEE
Q 020960 5 WVEVCLISARGLRRSSSLWKLQWFAVGWIDP-----NNKYCTK-IDASGKENPVWRTK-FAA-VVDDSNFQDAALHVEVY 76 (319)
Q Consensus 5 ~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~-----~~k~kTk-V~k~gg~NPvWNEt-F~f-~V~~~~lq~~~L~VeV~ 76 (319)
+|+|+|+||++|... +.||||+|++.+ ..+.+|+ ++++++.||+|||+ |.| .+... +...|+|+||
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~--~l~~L~f~V~ 75 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP--ELASLRVAVM 75 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG--GGCEEEEEEE
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCC--cccEEEEEEE
Confidence 799999999999754 479999999943 3445555 44567999999986 444 34443 2468999999
Q ss_pred ecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCcc--ceEEEEEEEEe
Q 020960 77 SREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNKP--QGFIDVSVCIS 140 (319)
Q Consensus 77 d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgKp--~G~L~lsL~f~ 140 (319)
|++ |++||++.|+|+.|..+.. +.+|+. ..|++ ...|-+.|.+.
T Consensus 76 D~d-----~~~lG~~~ipl~~l~~GyR--------------~vpL~~-~~g~~l~~~~L~v~i~~~ 121 (122)
T d2zkmx2 76 EEG-----NKFLGHRIIPINALNSGYH--------------HLCLHS-ESNMPLTMPALFIFLEMK 121 (122)
T ss_dssp ETT-----TEEEEEEEEEGGGBCCEEE--------------EEEEEC-TTCCEEEEEEEEEEEEEE
T ss_pred CCC-----CCEEEEEEEEcccCcCCce--------------EEEccC-CCcCCCCCceEEEEEEEE
Confidence 964 6899999999999987753 678876 56654 45555555543
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=9.2e-17 Score=133.18 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=81.7
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCeeeEEEEEEeCCCCCCcceEEEEEEec
Q 020960 3 KIWVEVCLISARGLRRSSSLWKLQWFAVGWIDPN----NKYCTKIDASGKENPVWRTKFAAVVDDSNFQDAALHVEVYSR 78 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~d~~gk~DPYV~v~ld~~----~k~kTkV~k~gg~NPvWNEtF~f~V~~~~lq~~~L~VeV~d~ 78 (319)
.+.|+|+|++|++|+..+..+..||||++.+.+. .++||+++++ +.||+|||+|.|.|....++...|.|+||+.
T Consensus 19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~ 97 (145)
T d1dqva2 19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAVVDY 97 (145)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeC-CCCceecceEEEEEehhhcCCCEEEEEEEec
Confidence 4689999999999998877788999999999532 4678999875 8999999999999876545567899999999
Q ss_pred CCCCCCCceeEEEEEechhhcc
Q 020960 79 EPIFLRERLLGTATIALKEFLA 100 (319)
Q Consensus 79 ~~~~~kDklIG~a~IpL~dL~~ 100 (319)
+. +.+|++||.+.|+|..+..
T Consensus 98 ~~-~~~~~~iG~~~i~l~~~~~ 118 (145)
T d1dqva2 98 DC-IGHNEVIGVCRVGPEAADP 118 (145)
T ss_dssp CS-SSCCEEEEECCCSSCTTCH
T ss_pred CC-CCCCcEEEEEEECchHcCc
Confidence 87 6889999999999987643
|
| >d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Fantom species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.0026 Score=52.26 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=87.4
Q ss_pred ceEEEEEEEEecCCCCC-C--CCCCCCcEEEEEECCCCeEEeeecCCCCCCCeeeEEEEEEeCCCC-----CCcceEEEE
Q 020960 3 KIWVEVCLISARGLRRS-S--SLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN-----FQDAALHVE 74 (319)
Q Consensus 3 ~~~LeVtViSAr~Lk~~-d--~~gk~DPYV~v~ld~~~k~kTkV~k~gg~NPvWNEtF~f~V~~~~-----lq~~~L~Ve 74 (319)
.+.+||.|.++.-=+.. . .....--||++.+..-..++|.+++ +.+|.+|-+..+.|.... ++...+.||
T Consensus 9 EnlfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~TPv~~--g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~le 86 (142)
T d2yrba1 9 ENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLE 86 (142)
T ss_dssp CEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEE
T ss_pred CcEEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEeeeeecCceec--CCCCcceeEEEEEEccCHHHHHHHhhCCEEEE
Confidence 46788999887311110 0 0133568899988777788999885 689999999999887643 357889999
Q ss_pred EEecCCCCCCCceeEEEEEechhhcccccCCCCCCCCCccceEEEEeEeCCCCc--cceEEEEEEEEe
Q 020960 75 VYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKNSNK--PQGFIDVSVCIS 140 (319)
Q Consensus 75 V~d~~~~~~kDklIG~a~IpL~dL~~~~~~~~~~~~~~~~~~~sy~Lrr~~sgK--p~G~L~lsL~f~ 140 (319)
|+.... ..-+.|+.++|.|++|+++.. + ...+-.|+. .++. .-|.|.+.+++.
T Consensus 87 lhqa~g--~~~~tvA~g~i~l~~lLd~~~-r---------~~~s~~l~g-~~~~~~~~G~leyw~rlr 141 (142)
T d2yrba1 87 VHQAYS--TEYETIAACQLKFHEILEKSG-R---------IFCTASLIG-TKGDIPNFGTVEYWFRLR 141 (142)
T ss_dssp EEEECS--SCEEEEEEEEECCSHHHHCCS-C---------EEEEEEECB-SSSCCTTSEEEEEEEEEE
T ss_pred EEeecC--CCcceeEEEEEEhhHhhCccc-c---------ccceeEEEc-cCCCcceEEEEEEEEEEE
Confidence 998663 355689999999999998642 1 123455665 3443 589999999874
|