Citrus Sinensis ID: 020984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSKQEIQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHccccEEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHcccccccEEEEEEcccccccccccccccEEcHHHHHHHHcccccccccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHccccccEEEccccHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccccccccccEEccccccccccEEEEEEccccccHHHHHHccccccEEEEccccccEEEccccHHHHHHHHHHHHHHHHHccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEEcccHHHHHccccccEEEEEEcccccccccccccccccccHEHHHHccccccccccccccHHHHccccccccccccccccEEEEEcEEEccccccccccccccccccHHccccccHcEEEEcccccEEEEEcccHHHHHHHcccccccccccccccHHHHHcccccEEEccccccccHccc
Coil and Loop (DISEMBL)
mctvitpskdhkslcgpaggctrhtigglvwnipdrkKMEEHLLFWIGSDNSAFANVVLTFNGceivrydateerlltdvsqplKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLvmgkpnpaklanfpecdvfinVSCAQTalldskeflapvitpfEAMLAfgrgtqwtGAYVMEFRDlmssspvegsdQAEEARFSFlkggyvedvaqpetengeeEKEGALALANAAEKALQLRdrsldpivkgtaksGAEYFVSrsyhglemqcnssspepyaigrsgkasgyddekskqeiq
Flexible Loop (DISEMBL)
mctvitpskdhkslcgpaggctrhtIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRydateerlltdvsqplkiLKRRYYLVEkakdaniigVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGrsgkasgyddekskqeiq
Low Complexity Region (SEG)
MCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETengeeekegalalanaaekaLQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSKQEIQ
Disordered region (IsUnstruct)
*************LCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDL******************FL***Y************************************************AEYFVSRSYH***********************************
Disordered Region (DISOPRED)
*************************IGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSS*******************************************************************SGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKA*************
Disordered Region (DISEMBL)
**************CGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMS***********EARFSFLKGGYVEDVAQ***********GALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRS****************
Disordered Region (DISPRO)
MCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVED***************A**L***AEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDE*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSKQEIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
A7SKJ3	531	Diphthamide biosynthesis	N/A	no	0.865	0.519	0.335	2e-44
Q5ZKI2	477	Diphthamide biosynthesis	yes	no	0.880	0.589	0.349	4e-44
Q10206	503	Diphthamide biosynthesis	yes	no	0.921	0.584	0.304	1e-42
A4QN59	498	Diphthamide biosynthesis	yes	no	0.849	0.544	0.327	4e-42
Q6DE00	478	Diphthamide biosynthesis	N/A	no	0.830	0.554	0.332	5e-37
B0G132	588	Diphthamide biosynthesis	yes	no	0.542	0.294	0.385	3e-32
P0CN20	515	Diphthamide biosynthesis	yes	no	0.868	0.537	0.273	5e-26
P0CN21	515	Diphthamide biosynthesis	N/A	no	0.868	0.537	0.273	5e-26
P32461	534	Diphthamide biosynthesis	yes	no	0.708	0.423	0.319	8e-26
Q568Y2	489	Diphthamide biosynthesis	yes	no	0.667	0.435	0.333	1e-25

>sp|A7SKJ3|DPH2_NEMVE Diphthamide biosynthesis protein 2 OS=Nematostella vectensis GN=dph2 PE=3 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 153/295 (51%), Gaps = 19/295 (6%)

Query: 21  CTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDV 80
           C R    G  + +     + ++ +F+IG  +    N+++T+N C+   YD        + 
Sbjct: 251 CNRRF--GRDFTLAANSSISDYQIFYIGEQSLTLRNLMMTYNKCQFSTYDPITNESRRET 308

Query: 81  SQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGK 140
               K L +RY+++++AKDA I+G++VGTLGVA YL +I ++K+++  AGKK+Y  VMGK
Sbjct: 309 LNVNKALMKRYHMIQRAKDAQIVGIVVGTLGVADYLKIIERLKKVLAIAGKKSYVFVMGK 368

Query: 141 PNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFR 200
            N AKLANF E DVF+ VSC + +L+DSKEF  PV+TP+E  +A  R  +WTG YV +F 
Sbjct: 369 LNVAKLANFLEIDVFVLVSCPENSLIDSKEFYKPVVTPYEMEIACLRTQEWTGDYVTDFH 428

Query: 201 DLMSSSPVE---GSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQ 257
           +L+    +      D  +    S + G    +      E G              E +  
Sbjct: 429 ELLPGKSINTFWTDDNDDSPYISLITGKMQHNYKSSAKEAG--------------ETSTS 474

Query: 258 LRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDE 312
           L  R+ +  +       AE+  SRS+ GL+     +       GR G A+GY DE
Sbjct: 475 LVQRNQETTLATQQPLTAEFLASRSWQGLQQNLGDTPVTTAVEGRRGIAAGYTDE 529

May be required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.
Nematostella vectensis (taxid: 45351)

>sp|Q5ZKI2|DPH2_CHICK Diphthamide biosynthesis protein 2 OS=Gallus gallus GN=DPH2 PE=2 SV=1

 Score =  178 bits (452), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/289 (34%), Positives = 159/289 (55%), Gaps = 8/289 (2%)

Query: 28  GLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKIL 87
           G  +++   +++++  +F++G++  A  + +LT+N      +D        +     + L
Sbjct: 196 GRRFHMEAAEELQDCSMFYVGAEGLALTSFMLTWNRFPFSSFDPATGHGRRETLNVNRAL 255

Query: 88  KRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA 147
            RR YLVE+A+DA+++G+LVGTLGVAGYL ++  + +L+ +AGK++YTL +GKPNPAKLA
Sbjct: 256 MRRLYLVERARDAHVVGILVGTLGVAGYLDVLEHLHQLVRRAGKRSYTLSVGKPNPAKLA 315

Query: 148 NFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSP 207
           NF E D+F+ V+CAQ +LLDS EF  P++TP+E  LA     +WTG Y+ +FRDL+    
Sbjct: 316 NFLEVDIFVLVACAQNSLLDSSEFYRPIVTPYELELACNPAREWTGNYLTDFRDLLP--- 372

Query: 208 VEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIV 267
             G+    E   +      + DV+    E         LA    +   L  RD++     
Sbjct: 373 --GACAHIELPPAVPAAEAIPDVSLITGEMRATHLCDPLAPQPPSSTTLACRDQTR---A 427

Query: 268 KGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSKQ 316
                  A +  SRS+ GLE Q   ++      GR G A  Y+DE  +Q
Sbjct: 428 LAEMSPAATFLESRSWRGLEQQLGKTAVSKAVQGRRGIAIAYEDEGREQ 476

Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.

Gallus gallus (taxid: 9031)

>sp|Q10206|DPH2_SCHPO Diphthamide biosynthesis protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph2 PE=3 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 167/309 (54%), Gaps = 15/309 (4%)

Query: 22  TRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGC--EIVRYDATEERLLTD 79
           T +TI G  +++P    +++  L +IG D+   ++++++      + + +D    +++ +
Sbjct: 194 TSYTIPGRTYSLPKSLSLQDMTLLYIGPDSPTLSSILMSHYSLVNQFLSFDPLSNKIVEE 253

Query: 80  VSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 139
            S     L+RRY LV++ +DA +IG+++GTLGV  YLH+++Q++++I  AGKK Y L +G
Sbjct: 254 SSFTGAKLRRRYALVQRCRDAGVIGIVIGTLGVHRYLHVLNQLRKMILNAGKKPYMLAVG 313

Query: 140 KPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEF 199
           K NPAKLANF E + F+ ++C + +L+DSKEF  P++TPFE + A      W   +++ F
Sbjct: 314 KLNPAKLANFQEIECFVLIACGENSLIDSKEFYRPIVTPFELVKALSSDMSWNNDFILSF 373

Query: 200 RDLM-------SSSPVEG-SDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANA 251
            +++       S  P E  ++++ E  FS + G +V        +   E  +      N 
Sbjct: 374 DEVLKLSEGKQSKEPSEVLTEESAEPHFSLITGKFVNSTPMRHLDVTLETADA----KNN 429

Query: 252 AEKALQLRDRSLDPI-VKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYD 310
              +  +  R +  + V G     A +  S+S+ GL+       P     G+SG A GY 
Sbjct: 430 DSSSASIEKRGMRSLAVNGVYSPAAAFLQSKSWSGLDSVDEGEGPSKLYEGQSGIAKGYV 489

Query: 311 DEKSKQEIQ 319
            E SK++IQ
Sbjct: 490 GEGSKEKIQ 498

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A4QN59|DPH2_DANRE Diphthamide biosynthesis protein 2 OS=Danio rerio GN=dph2 PE=2 SV=1

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 156/293 (53%), Gaps = 22/293 (7%)

Query: 28  GLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKIL 87
           G  + I + + + ++ +F+IG +     N ++++N C    ++        +  Q  K L
Sbjct: 209 GRQFRIKEGQTVNDYSIFYIGQEGLTLTNFMMSWNNCVFSSFNPETSTGRVESVQINKAL 268

Query: 88  KRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA 147
            +RYY +E+AKDA+++G+LVGTLGVA YL +I Q+K+ I +AGKK+Y   MGK N  KLA
Sbjct: 269 MKRYYAIERAKDASVVGILVGTLGVANYLIIIEQLKDTIQRAGKKSYMFAMGKINVPKLA 328

Query: 148 NFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSS-- 205
           NF E D+++ V+C + +LLDS EF  PV+TPFE  LA  +  +WTG YV +FR+L+    
Sbjct: 329 NFLEIDIYVLVACPENSLLDSSEFYRPVVTPFEMELACNKHREWTGEYVTDFRELLPGGS 388

Query: 206 ------SPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLR 259
                  P + + + E    S + G       +  + N  E       + N+   +L LR
Sbjct: 389 SHVGFPEPSQSATEEETTDVSLITGAL-----RSCSTNSSE------MMHNSETSSLVLR 437

Query: 260 DRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDE 312
           +++L         + A +   RS+ GLE +   +       G+ G A  Y++E
Sbjct: 438 NQTL---TVANTNAAASFLAGRSWQGLEPKLGQTPVVKAVKGQRGIAIAYEEE 487

Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.

Danio rerio (taxid: 7955)

>sp|Q6DE00|DPH2_XENLA Diphthamide biosynthesis protein 2 OS=Xenopus laevis GN=dph2 PE=2 SV=1

 Score =  155 bits (391), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 142/286 (49%), Gaps = 21/286 (7%)

Query: 34  PD-RKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYY 92
           PD R   E + +F++G + S   N++LT+  C    ++       T+     + L  R+Y
Sbjct: 204 PDLRLWPESYGIFYVGGEGSTLNNLMLTWPRCSFFSFNPFTGEGRTEGLHVNRALMIRFY 263

Query: 93  LVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPEC 152
           L+E+A+DA++ G+LVGTLGV+ YL  +  +K +I  AGKK+Y   +GK NPAKLANFPE 
Sbjct: 264 LIERARDAHVFGILVGTLGVSDYLSALKHLKNIIHLAGKKSYMFSVGKLNPAKLANFPEI 323

Query: 153 DVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSS------ 206
           DVF+ V+C + +LLDS EF  PV+TP E  +A     +W G  +  FR+L+         
Sbjct: 324 DVFVLVACPENSLLDSSEFYKPVVTPDEMEIACNPAREWHGYCITNFRELLPGGSAYVEF 383

Query: 207 PVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPI 266
           P      A     S + G  +        E  E++ + +L   N+     Q+        
Sbjct: 384 PETDPSDAHHTDVSLITGN-LRSSHLTVAETLEKDSDTSLVQRNSKTALAQM-------- 434

Query: 267 VKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDE 312
                 S A Y  SRS+ GL+     +       GR G A  Y+DE
Sbjct: 435 -----SSAASYLASRSWQGLDKALGQTPVVKAVEGRKGIAIAYEDE 475

May be required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.

Xenopus laevis (taxid: 8355)

>sp|B0G132|DPH2_DICDI Diphthamide biosynthesis protein 2 OS=Dictyostelium discoideum GN=dph2 PE=3 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 103/174 (59%), Gaps = 1/174 (0%)

Query: 26  IGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLK 85
           I G      + K +++    WIG ++    N+++ FN   + RY   + +LL +     K
Sbjct: 291 ISGRKIEFKNEKDIKKFNFIWIGEESLTLTNLLMNFNQQMVYRYYIDDNKLLQETLPRNK 350

Query: 86  ILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK 145
            L RRY++ EK KDA+IIG++V TL V  Y   I  +K+LI  +GKK Y  V+G+ N  K
Sbjct: 351 SLMRRYHISEKCKDASIIGIVVSTLSVQKYSETIDGLKKLIIASGKKPYVFVVGRLNVPK 410

Query: 146 LANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEF 199
           LANF E D+++ V+C +  ++DSK+F  P+ TPFE  L+  R  +WTG Y+ +F
Sbjct: 411 LANFSEIDIYVIVACHENTMVDSKDFYKPIATPFELNLSL-RNEKWTGEYITDF 463

May be required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.

Dictyostelium discoideum (taxid: 44689)

>sp|P0CN20|DPH2_CRYNJ Diphthamide biosynthesis protein 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DPH2 PE=3 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 139/292 (47%), Gaps = 15/292 (5%)

Query: 34  PDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYL 93
           P   +M + +L++IG +  +  N+ +T     +  Y  + + +        ++L RR + 
Sbjct: 227 PQGLEMNDCVLWYIGEEGRSCMNLQMTHANNPLFIYSPSSQSVSPLHRTTSRLLSRRLFA 286

Query: 94  VEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECD 153
           + +A  A++ G++V  +G+A    ++ Q++E + +A KK+YTL +G+ NPAKLANF E +
Sbjct: 287 LHQALSADVFGLIVSNIGLASSKPLLAQLREDLKRAKKKSYTLSVGRLNPAKLANFAEIE 346

Query: 154 VFINVSCAQTALLDSKEFLAPVITPFEAMLAFG------RGTQWTGAYVMEFRDL----- 202
            F+ V CA+  ++DSK+FL P+ITP+E  LA            WT       +D      
Sbjct: 347 CFVLVGCAEGGVVDSKDFLRPIITPWELELALQGPDHVWAPENWTLDLGTVLKDAQEREI 406

Query: 203 -MSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDR 261
            +           +   FS +  G +    +    NG    E    L +   + L LR++
Sbjct: 407 KIKQDSSTADSDDDSLEFSLIT-GTMRTKKRFAFGNGTHTLENNKLLGDGGVQDLTLRNQ 465

Query: 262 SLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEK 313
           +    +     +G+ +  SR + GLE +     P     GRSG A GY +EK
Sbjct: 466 NFS--LSKLESAGSTFLASREFQGLEPRYGMDEPSVLEQGRSGVARGYTEEK 515

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CN21|DPH2_CRYNB Diphthamide biosynthesis protein 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=DPH2 PE=3 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 139/292 (47%), Gaps = 15/292 (5%)

Query: 34  PDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYL 93
           P   +M + +L++IG +  +  N+ +T     +  Y  + + +        ++L RR + 
Sbjct: 227 PQGLEMNDCVLWYIGEEGRSCMNLQMTHANNPLFIYSPSSQSVSPLHRTTSRLLSRRLFA 286

Query: 94  VEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECD 153
           + +A  A++ G++V  +G+A    ++ Q++E + +A KK+YTL +G+ NPAKLANF E +
Sbjct: 287 LHQALSADVFGLIVSNIGLASSKPLLAQLREDLKRAKKKSYTLSVGRLNPAKLANFAEIE 346

Query: 154 VFINVSCAQTALLDSKEFLAPVITPFEAMLAFG------RGTQWTGAYVMEFRDL----- 202
            F+ V CA+  ++DSK+FL P+ITP+E  LA            WT       +D      
Sbjct: 347 CFVLVGCAEGGVVDSKDFLRPIITPWELELALQGPDHVWAPENWTLDLGTVLKDAQEREI 406

Query: 203 -MSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDR 261
            +           +   FS +  G +    +    NG    E    L +   + L LR++
Sbjct: 407 KIKQDSSTADSDDDSLEFSLIT-GTMRTKKRFAFGNGTHTLENNKLLGDGGVQDLTLRNQ 465

Query: 262 SLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEK 313
           +    +     +G+ +  SR + GLE +     P     GRSG A GY +EK
Sbjct: 466 NFS--LSKLESAGSTFLASREFQGLEPRYGMDEPSVLEQGRSGVARGYTEEK 515

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|P32461|DPH2_YEAST Diphthamide biosynthesis protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPH2 PE=1 SV=1

 Score =  117 bits (294), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 119/244 (48%), Gaps = 18/244 (7%)

Query: 80  VSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 139
           V+ P   L RRY  +  A+ A  IG+LV TL +      I+++ +LI    KK Y  V+G
Sbjct: 282 VTGPFPSLMRRYKYMHVARTAGCIGILVNTLSLRNTRETINELVKLIKTREKKHYLFVVG 341

Query: 140 KPNPAKLANFPECDVFINVSCAQTALLDSK--EFLAPVITPFEAMLAFGRGTQWTGAYVM 197
           KPN AKLANF + D++  + C+Q+ ++  +  EF  P+ITP+E  LA      WTG +V+
Sbjct: 342 KPNVAKLANFEDIDIWCILGCSQSGIIVDQFNEFYKPIITPYELNLALSEEVTWTGKWVV 401

Query: 198 EFRD--------LMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALA 249
           +FRD        L     +  S  ++E  F  ++G Y    ++P       E E A    
Sbjct: 402 DFRDAIDEIEQNLGGQDTISASTTSDEPEFDVVRGRYTS-TSRPLRALTHLELEAA---D 457

Query: 250 NAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAI----GRSGK 305
           +   K L  R  +   ++KGT  + A    +RS+ GL    +S+  +        G SG 
Sbjct: 458 DDDSKQLTTRHTASGAVIKGTVSTSASALQNRSWKGLGSDFDSTEVDNTGADIEEGISGV 517

Query: 306 ASGY 309
           A GY
Sbjct: 518 ARGY 521

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q568Y2|DPH2_RAT Diphthamide biosynthesis protein 2 OS=Rattus norvegicus GN=Dph2 PE=2 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 119/240 (49%), Gaps = 27/240 (11%)

Query: 85  KILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA 144
           ++  RR YLVE+A+DA ++G+LVGTLGVA +L  +  +++L   AGK++Y L +GKP PA
Sbjct: 266 RLRARRLYLVERARDARVVGLLVGTLGVAQHLEALAHLRKLTEAAGKRSYVLALGKPTPA 325

Query: 145 KLANFPECDVFINVSCAQTALL--DSKEFLAPVITPFEAMLAFGRGTQWTG--AYVMEFR 200
           KLANFPE DVF+ ++C   AL    S  F  P++TP E   A        G   ++  + 
Sbjct: 326 KLANFPEMDVFVLLACPLGALTLQPSGGFFRPILTPCELEAACNPAWPPPGLAPHLTHYA 385

Query: 201 DLMSSSPVEGSDQAEEARF------SFLKGGYVEDVAQPETENGEEEKEGALALANAAEK 254
           +L+  SP        E+        S + G   E    P  ++ ++ K  AL        
Sbjct: 386 ELLPGSPFHVPLPPPESELWDTPDVSLISG---ELRPPPPWKSSDDTKCSAL----TPRP 438

Query: 255 ALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKS 314
            L+L + S            A +  SRS+ GLE +   +  +    GR G A  Y+DE S
Sbjct: 439 QLELAESS----------PAASFLSSRSWQGLEPRLGQTPVKEAVQGRRGIAIAYEDEGS 488

Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
359478316	506	PREDICTED: diphthamide biosynthesis prot	0.996	0.628	0.707	1e-131
255579442	499	diphteria toxin resistance protein 2, dp	0.978	0.625	0.685	1e-126
224068785	496	predicted protein [Populus trichocarpa]	0.974	0.627	0.685	1e-125
356555374	485	PREDICTED: diphthamide biosynthesis prot	0.968	0.637	0.666	1e-120
449468836	500	PREDICTED: diphthamide biosynthesis prot	0.905	0.578	0.692	1e-116
356547432	456	PREDICTED: diphthamide biosynthesis prot	0.909	0.635	0.662	1e-110
297820792	493	diphthamide synthesis DPH2 family protei	0.978	0.632	0.600	1e-109
15231723	491	diphthamide synthesis DPH2 family protei	0.978	0.635	0.603	1e-108
357436535	612	Diphthamide biosynthesis protein 2 conta	0.959	0.5	0.623	1e-108
242032299	514	hypothetical protein SORBIDRAFT_01g00172	0.912	0.566	0.606	1e-101

>gi|359478316|ref|XP_002273627.2| PREDICTED: diphthamide biosynthesis protein 2-like [Vitis vinifera] gi|296084273|emb|CBI24661.3| unnamed protein product [Vitis vinifera]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/332 (70%), Positives = 272/332 (81%), Gaps = 14/332 (4%)

Query: 1   MCTVITPSKDHKSLCGPAGGC--------------TRHTIGGLVWNIPDRKKMEEHLLFW 46
           MC+V+ PSKD  +  G  G                TR++IGGL WN+P+  +ME++LL W
Sbjct: 175 MCSVMNPSKDCTTSNGHLGSVGSFTANEGFGKATGTRYSIGGLAWNLPEGHRMEDYLLVW 234

Query: 47  IGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVL 106
           IG+DNSAFANVVLTFNGC+IVRYDA + RL+TD+SQ  +ILKRRYYLVEKAKD+NIIG+L
Sbjct: 235 IGADNSAFANVVLTFNGCDIVRYDAVDNRLVTDLSQQRRILKRRYYLVEKAKDSNIIGLL 294

Query: 107 VGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALL 166
           VGTLGVAGYLHMI QMKELI  AGKKAYTLVMG+PNPAKLANFPECDVFI VSCAQTALL
Sbjct: 295 VGTLGVAGYLHMIRQMKELIAAAGKKAYTLVMGRPNPAKLANFPECDVFIYVSCAQTALL 354

Query: 167 DSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGY 226
           DSKEFLAPVITPFEAMLAF RG+QWTGAYVMEFRDL+SSSPVE  +Q+EEARFSFL+GGY
Sbjct: 355 DSKEFLAPVITPFEAMLAFNRGSQWTGAYVMEFRDLISSSPVEVRNQSEEARFSFLQGGY 414

Query: 227 VEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGL 286
           VED    ETE+ EE+++GALALA A EKALQ+RD+  + ++KGTAKSG E+F +RSYHGL
Sbjct: 415 VEDFDLKETEDAEEDEDGALALAYATEKALQVRDKHPNSLIKGTAKSGGEFFAARSYHGL 474

Query: 287 EMQCNSSSPEPYAIGRSGKASGYDDEKSKQEI 318
           EM  N SSPEPY IGR GKASGY+ EK  +  
Sbjct: 475 EMHSNDSSPEPYLIGRVGKASGYEGEKGNENF 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579442|ref|XP_002530564.1| diphteria toxin resistance protein 2, dph2, putative [Ricinus communis] gi|223529863|gb|EEF31794.1| diphteria toxin resistance protein 2, dph2, putative [Ricinus communis]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/331 (68%), Positives = 263/331 (79%), Gaps = 19/331 (5%)

Query: 1   MCTVITPSKDHK---------------SLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLF 45
           MC+ I PS + K               +  G A GC RH IGGL+W++   ++ME++LL 
Sbjct: 173 MCSAINPSNNQKKSDEPARLIGDCVATNDVGEAAGC-RHKIGGLIWDLSRGQRMEDYLLV 231

Query: 46  WIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGV 105
           WIGS NSAFANVVLTFNGCEIVRYDA E RL+TD+SQ  +ILKRRYYLVEKAKDANI+G+
Sbjct: 232 WIGSGNSAFANVVLTFNGCEIVRYDAKESRLVTDLSQQRRILKRRYYLVEKAKDANIVGI 291

Query: 106 LVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTAL 165
           LVGTLGVAGYL MIHQMK+LIT AGKKAYTLVMG+PNPAKLANFPECD+FI VSCAQTAL
Sbjct: 292 LVGTLGVAGYLDMIHQMKDLITSAGKKAYTLVMGRPNPAKLANFPECDIFIYVSCAQTAL 351

Query: 166 LDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGG 225
           LDSKEFLAPVITPFEAM+AF RG+QWTGAYVMEFRDL+ SSPVE   +  EARFSF++G 
Sbjct: 352 LDSKEFLAPVITPFEAMIAFNRGSQWTGAYVMEFRDLIDSSPVEAMIKPAEARFSFIQGR 411

Query: 226 YVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHG 285
           YVED      EN EE+ EG LALANA EKALQL DR+   ++KGT KSGAEYF +RSY G
Sbjct: 412 YVEDFDL--QENIEEDNEG-LALANATEKALQLHDRNSTSLIKGTIKSGAEYFANRSYQG 468

Query: 286 LEMQCNSSSPEPYAIGRSGKASGYDDEKSKQ 316
           LEM  ++S P  + IGR+GKASGY++EK+KQ
Sbjct: 469 LEMHGDNSKPGAFLIGRTGKASGYENEKTKQ 499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068785|ref|XP_002326199.1| predicted protein [Populus trichocarpa] gi|222833392|gb|EEE71869.1| predicted protein [Populus trichocarpa]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/327 (68%), Positives = 256/327 (78%), Gaps = 16/327 (4%)

Query: 1   MCTVITPSKDHKSLCG--------------PAGGCTRHTIGGLVWNIPDRKKMEEHLLFW 46
           MC +I P   HK   G                  C+RHTIGGL W +P  +KME++LL W
Sbjct: 170 MCPLINPPDCHKDSGGLPRSVGDGEVSNELGVAACSRHTIGGLSWELPSGQKMEDYLLLW 229

Query: 47  IGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVL 106
           IGSDNSAFANVVLTFNGCEIVRYDA    L TD+SQ  +ILKRRYYLVEKAKDANI+G+L
Sbjct: 230 IGSDNSAFANVVLTFNGCEIVRYDANGNFLGTDLSQQRRILKRRYYLVEKAKDANIVGIL 289

Query: 107 VGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALL 166
           VGTLGVAGYL+MIHQMK+LIT AGKK YTLVMG+PNPAKLANFPECDVFI VSCAQTALL
Sbjct: 290 VGTLGVAGYLNMIHQMKDLITGAGKKVYTLVMGRPNPAKLANFPECDVFIYVSCAQTALL 349

Query: 167 DSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGY 226
           DSK+F APVITPFEAMLAF RG++WTGAYVMEFRDL++SSPVE    +EEARFSF++G Y
Sbjct: 350 DSKDFYAPVITPFEAMLAFNRGSEWTGAYVMEFRDLITSSPVEVKSYSEEARFSFVQGRY 409

Query: 227 VEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGL 286
           VED    E +  EEE EG LALANA EKAL+L+DRS + + KGT +SGA+YF +RSYHGL
Sbjct: 410 VEDFDLQEKK--EEENEGVLALANATEKALKLQDRSSNSLTKGTVRSGADYFATRSYHGL 467

Query: 287 EMQCNSSSPEPYAIGRSGKASGYDDEK 313
           +M  + S  EPY IGR+GKASGY  EK
Sbjct: 468 DMHGDDSMLEPYLIGRTGKASGYQHEK 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555374|ref|XP_003546007.1| PREDICTED: diphthamide biosynthesis protein 2-like [Glycine max]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/324 (66%), Positives = 262/324 (80%), Gaps = 15/324 (4%)

Query: 3   TVITPSKDHKSL---------CGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSA 53
           +V+ PSKD K +         C  A G T ++IGGL W +P+ + M+++L+FWIG D+SA
Sbjct: 167 SVMFPSKDIKKINVLQEPVSDCNGASG-TMYSIGGLTWKLPEGQSMDDYLVFWIGHDDSA 225

Query: 54  FANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVA 113
           FANVVLTFN CEIVRYDA E R++TD+ Q  +ILKRRYYLVE+AKDANI+G+LVGTLGVA
Sbjct: 226 FANVVLTFNACEIVRYDANENRMVTDLFQHRRILKRRYYLVERAKDANIVGILVGTLGVA 285

Query: 114 GYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLA 173
           GYLH+I+QM ELIT AGKKAYTLVMG+PNPAKLANFPECDVF+ VSCAQTALLDSKE+LA
Sbjct: 286 GYLHIINQMMELITGAGKKAYTLVMGRPNPAKLANFPECDVFLYVSCAQTALLDSKEYLA 345

Query: 174 PVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPV-EGSDQAEEARFSFLKGGYVEDVAQ 232
           PVITPFEAM+AF RG+QWTGAYVMEFRDL++   +  G+ + EEARFSFLKGGYVED   
Sbjct: 346 PVITPFEAMIAFNRGSQWTGAYVMEFRDLINLPQMGVGNQEEEEARFSFLKGGYVEDFEN 405

Query: 233 PETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNS 292
              EN EEE+E  LAL NA EKALQLR+ S + ++KG+A+SGAE+  +RSY GL M   +
Sbjct: 406 --QENVEEERE-TLALVNATEKALQLRNNS-NVLMKGSARSGAEFLANRSYQGLNMSSEN 461

Query: 293 SSPEPYAIGRSGKASGYDDEKSKQ 316
           +SPEPY IGR G+ASGY+DEK+KQ
Sbjct: 462 TSPEPYLIGRRGRASGYEDEKNKQ 485

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468836|ref|XP_004152127.1| PREDICTED: diphthamide biosynthesis protein 2-like [Cucumis sativus] gi|449484704|ref|XP_004156957.1| PREDICTED: diphthamide biosynthesis protein 2-like [Cucumis sativus]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/293 (69%), Positives = 245/293 (83%), Gaps = 4/293 (1%)

Query: 23  RHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQ 82
           RH IGGL W +P  +++++  LFWIGS+NSAFANVVLTFNGCEIVRYDA E  L+TDVS+
Sbjct: 212 RHHIGGLFWELPKERRVKDCSLFWIGSENSAFANVVLTFNGCEIVRYDAKESWLVTDVSK 271

Query: 83  PLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN 142
             +ILKRRYYLVEKAKDA I+G+LVGTLG+AGYLH+IHQMKELIT AGKKAYTLVMGKPN
Sbjct: 272 QRRILKRRYYLVEKAKDAAIVGILVGTLGLAGYLHIIHQMKELITGAGKKAYTLVMGKPN 331

Query: 143 PAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDL 202
           PAKLANFPEC VFI VSCAQTAL+DSKE+LAPVITPFEA LAF RG+QWTGAYVMEF+DL
Sbjct: 332 PAKLANFPECGVFIYVSCAQTALMDSKEYLAPVITPFEATLAFSRGSQWTGAYVMEFQDL 391

Query: 203 MSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRS 262
           +  S  E +++++EAR+SFL+GGYVED    +++   EE+ GA AL  A EKALQLRD  
Sbjct: 392 IDFSTPEEANRSDEARYSFLQGGYVEDW---DSQENTEEENGAHALVTATEKALQLRDNR 448

Query: 263 LDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSK 315
            + +++GTA+SGAE+F +RS+ GL++   S  PEPY IGRSGKASGY DEK++
Sbjct: 449 -NSLIEGTARSGAEFFATRSFQGLDINNGSLEPEPYVIGRSGKASGYQDEKNR 500

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547432|ref|XP_003542116.1| PREDICTED: diphthamide biosynthesis protein 2-like [Glycine max]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/302 (66%), Positives = 240/302 (79%), Gaps = 12/302 (3%)

Query: 15  CGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEE 74
           C  A G T ++IGGL W +P+ + M+++LLFWIG D+SAFANVVLTFN CEIVRYDA E 
Sbjct: 167 CNGASG-TVYSIGGLAWKLPEGQSMDDYLLFWIGHDDSAFANVVLTFNACEIVRYDANEN 225

Query: 75  RLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAY 134
           R++TD+ Q  +ILKRRY L         +G+LVGTLGVAGYLH+I+QM ELIT AGKKAY
Sbjct: 226 RMVTDLFQQKRILKRRYILPG-------VGILVGTLGVAGYLHIINQMMELITGAGKKAY 278

Query: 135 TLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGA 194
           TLVMG+PNPAKLANFPECDVF+ VSCAQTALLDSKE+LAPVITPFEAM+AF RG+QWTGA
Sbjct: 279 TLVMGRPNPAKLANFPECDVFLYVSCAQTALLDSKEYLAPVITPFEAMIAFNRGSQWTGA 338

Query: 195 YVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEK 254
           YVMEFRDL++   +E  +Q EEARFSFLKGGYV+D      EN EEE+E  LAL NA EK
Sbjct: 339 YVMEFRDLINLPQMEVGNQEEEARFSFLKGGYVDDFEN--QENAEEERE-TLALVNATEK 395

Query: 255 ALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKS 314
           ALQL++ S + ++KG A+SG E+  +RSY GL M   ++SPEPY IGR G+ASGY+DEK 
Sbjct: 396 ALQLQNNS-NALMKGNARSGVEFLANRSYQGLNMSSENASPEPYLIGRRGRASGYEDEKK 454

Query: 315 KQ 316
           KQ
Sbjct: 455 KQ 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820792|ref|XP_002878279.1| diphthamide synthesis DPH2 family protein [Arabidopsis lyrata subsp. lyrata] gi|297324117|gb|EFH54538.1| diphthamide synthesis DPH2 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/328 (60%), Positives = 245/328 (74%), Gaps = 16/328 (4%)

Query: 1   MCTVITPSKDHK------------SLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIG 48
           +C+ I+PS+D +                       + +GGL W++P+  K+E++LLFWIG
Sbjct: 166 LCSFISPSRDPREPMEHPRPLSESDSSDSLSSSRSYRLGGLTWDLPEGSKIEDYLLFWIG 225

Query: 49  SDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVG 108
           SD+SAFANVVLTFNGC+IVRYDA E+ L+T+  Q  +ILKRRYYLVEKAKDANIIG+LVG
Sbjct: 226 SDSSAFANVVLTFNGCDIVRYDAEEDSLVTEFYQQRRILKRRYYLVEKAKDANIIGILVG 285

Query: 109 TLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDS 168
           TLGVAGYLHMIH M+ LI+ AGKK+Y L MG+PNPAKLANFPECDVFI +SCAQTALLDS
Sbjct: 286 TLGVAGYLHMIHHMQALISAAGKKSYILAMGRPNPAKLANFPECDVFIYISCAQTALLDS 345

Query: 169 KEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSS--SPVEGSDQAEEARFSFLKGGY 226
           KEF++PVITPFEA LAF RG++WTGAY+M F+D+++S  S  E    +EE RFSF +GGY
Sbjct: 346 KEFMSPVITPFEANLAFSRGSEWTGAYLMHFQDVINSVKSESEAHSGSEEPRFSFFQGGY 405

Query: 227 VED-VAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGT-AKSGAEYFVSRSYH 284
           VED     + +NGEE+    +AL  AAEKALQLR    + + K T AKSG EYF+ R+Y 
Sbjct: 406 VEDHKTNDQAKNGEEDTGETMALVQAAEKALQLRGNDHNSLTKQTAAKSGPEYFLRRAYR 465

Query: 285 GLEMQCNSSSPEPYAIGRSGKASGYDDE 312
           GLE+   ++SPEPY +GRSGKASGY  E
Sbjct: 466 GLEINSENTSPEPYIVGRSGKASGYKHE 493

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231723|ref|NP_191522.1| diphthamide synthesis DPH2 family protein [Arabidopsis thaliana] gi|6996299|emb|CAB75460.1| putative protein [Arabidopsis thaliana] gi|19715609|gb|AAL91627.1| AT3g59630/T16L24_180 [Arabidopsis thaliana] gi|53749154|gb|AAU90062.1| At3g59630 [Arabidopsis thaliana] gi|332646426|gb|AEE79947.1| diphthamide synthesis DPH2 family protein [Arabidopsis thaliana]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/328 (60%), Positives = 246/328 (75%), Gaps = 16/328 (4%)

Query: 1   MCTVITPSKD-HKSLCGP-----------AGGCTRHTIGGLVWNIPDRKKMEEHLLFWIG 48
           +C+ I+PSKD  +S+  P                 + +GGL W++P+  K+E++LLFWIG
Sbjct: 164 LCSFISPSKDPRESMEHPRPYSESDSSDSLSSSRSYRLGGLTWDLPEGSKIEDYLLFWIG 223

Query: 49  SDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVG 108
           SD+SAFANVVLTFNGC+IVRYDA E+ L+T+  Q  +ILKRRYYLVEKAKDANIIG+LVG
Sbjct: 224 SDSSAFANVVLTFNGCDIVRYDAEEDSLVTEFYQQRRILKRRYYLVEKAKDANIIGILVG 283

Query: 109 TLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDS 168
           TLGVAGYLHMIH M+ LI+ AGKK+Y L MG+PNPAKLANFPECDVFI +SCAQTALLDS
Sbjct: 284 TLGVAGYLHMIHHMQALISAAGKKSYILAMGRPNPAKLANFPECDVFIYISCAQTALLDS 343

Query: 169 KEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSS--SPVEGSDQAEEARFSFLKGGY 226
           KEF++PVITPFEA LAF RG++WTGAY+M F+D+++S  S  E    +EE RFSF +GGY
Sbjct: 344 KEFMSPVITPFEANLAFSRGSEWTGAYLMHFQDVINSVKSESEAHIGSEEPRFSFFQGGY 403

Query: 227 VED-VAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGT-AKSGAEYFVSRSYH 284
           VED     + +NGEE+    + L  AAEKALQLR    + + K T AKSG EYF++R Y 
Sbjct: 404 VEDHKTNDQAKNGEEDTGETMTLVQAAEKALQLRGNDHNSLTKQTAAKSGPEYFLNRVYR 463

Query: 285 GLEMQCNSSSPEPYAIGRSGKASGYDDE 312
           GLE+   ++ PEPY +GRSGKASGY  E
Sbjct: 464 GLEINSENTLPEPYIVGRSGKASGYKHE 491

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436535|ref|XP_003588543.1| Diphthamide biosynthesis protein 2 containing protein expressed [Medicago truncatula] gi|355477591|gb|AES58794.1| Diphthamide biosynthesis protein 2 containing protein expressed [Medicago truncatula]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/324 (62%), Positives = 249/324 (76%), Gaps = 18/324 (5%)

Query: 7   PSKDHKSL-------CGPAGGCTR-------HTIGGLVWNIPDRKKMEEHLLFWIGSDNS 52
           PSKD K L       CG     +        ++IGGL W + + + ME++ LFWIG DNS
Sbjct: 293 PSKDTKKLNDLQEETCGCGDNSSSDGASGAAYSIGGLTWKLLEGQSMEDYSLFWIGHDNS 352

Query: 53  AFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGV 112
           AFANVVL FN CEIVRYDAT+ +++ D+SQ  +ILKRRYYLVE+AKDANI+G+LVGTLGV
Sbjct: 353 AFANVVLRFNACEIVRYDATKSQMVADLSQQRRILKRRYYLVERAKDANIVGILVGTLGV 412

Query: 113 AGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFL 172
           AGYLH+I+QM  LIT AGKKAYTLVMGKPNPAKLANFPECDVF+ VSCAQTALLDSK++L
Sbjct: 413 AGYLHIINQMMGLITAAGKKAYTLVMGKPNPAKLANFPECDVFLYVSCAQTALLDSKDYL 472

Query: 173 APVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQ 232
           APVITPFEA +AF RG+QWTGAYVM F DL++   V+  +Q EEARFSFLKGGYVED   
Sbjct: 473 APVITPFEATIAFNRGSQWTGAYVMGFGDLINLPQVQVGNQ-EEARFSFLKGGYVEDFEN 531

Query: 233 PETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNS 292
            E    EE ++  LALANA EKALQLRD + + I+KG AKSGAE+F +R+Y GL +  ++
Sbjct: 532 QENNVEEERED--LALANATEKALQLRD-NCNSIIKGGAKSGAEFFANRTYQGLNIPDDN 588

Query: 293 SSPEPYAIGRSGKASGYDDEKSKQ 316
           ++P+ + IGR G+A+GY+DE +K 
Sbjct: 589 TTPQSFVIGRKGRAAGYEDENNKH 612

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242032299|ref|XP_002463544.1| hypothetical protein SORBIDRAFT_01g001720 [Sorghum bicolor] gi|241917398|gb|EER90542.1| hypothetical protein SORBIDRAFT_01g001720 [Sorghum bicolor]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/295 (60%), Positives = 226/295 (76%), Gaps = 4/295 (1%)

Query: 23  RHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQ 82
           ++++GG+ W+I   +KME++L+FWIG DNSAFAN+VLTFN CEIVRYDA E +L  D+S 
Sbjct: 221 KYSLGGITWDISVDEKMEDYLIFWIGQDNSAFANIVLTFNKCEIVRYDAIENQLTADISH 280

Query: 83  PLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN 142
            +KIL+RRYYLVEKAKDANIIG+LVGTLG AGYLH+I QMKELI  AGKK+YTLVMG+PN
Sbjct: 281 LMKILRRRYYLVEKAKDANIIGILVGTLGAAGYLHIIEQMKELIKAAGKKSYTLVMGRPN 340

Query: 143 PAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDL 202
            AKLANFPEC+VFI VSCAQTALLDSK+FLAPVITPFEA+LAF RG +WTG Y+++F+DL
Sbjct: 341 SAKLANFPECEVFIYVSCAQTALLDSKDFLAPVITPFEAVLAFSRGREWTGEYLLDFKDL 400

Query: 203 MSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRS 262
           ++    E     EEARFSF+KG YVED    E    EE+ E +LALA   EKAL ++++ 
Sbjct: 401 ITLEKQEVVSTTEEARFSFIKGVYVEDNCPQE---NEEQSETSLALAEVTEKALSIQNQH 457

Query: 263 LDPIV-KGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSKQ 316
            D ++ KG A S  +Y  +RSY GL  +     P    +GR+G+A+GY DEK++ 
Sbjct: 458 NDAVLYKGGAMSSIDYLKARSYRGLTGEYEGPVPNSILVGRTGRAAGYSDEKTEN 512

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
TAIR|locus:2097513	491	AT3G59630 "AT3G59630" [Arabido	0.978	0.635	0.573	2.7e-93
UNIPROTKB|F1N8G4	477	DPH2 "Diphthamide biosynthesis	0.523	0.350	0.443	5.9e-44
UNIPROTKB|F1P2X6	481	DPH2 "Diphthamide biosynthesis	0.523	0.347	0.443	5.9e-44
UNIPROTKB|Q5ZKI2	477	DPH2 "Diphthamide biosynthesis	0.523	0.350	0.443	5.9e-44
POMBASE|SPBC17D1.02	503	dph2 "diphthamide biosynthesis	0.921	0.584	0.310	1.7e-41
ZFIN|ZDB-GENE-030219-100	498	dph2 "DPH2 homolog (S. cerevis	0.865	0.554	0.343	1.8e-39
DICTYBASE|DDB_G0295687	588	dph2 "diphthamide biosynthesis	0.542	0.294	0.385	1.4e-33
RGD|1304634	489	Dph2 "DPH2 homolog (S. cerevis	0.385	0.251	0.425	7.8e-26
UNIPROTKB|B4DNI8	354	DPH2 "cDNA FLJ55730, highly si	0.385	0.347	0.401	1.7e-25
UNIPROTKB|H0YCR5	262	DPH2 "Diphthamide biosynthesis	0.385	0.469	0.401	1.7e-25

TAIR|locus:2097513 AT3G59630 "AT3G59630" [Arabidopsis thaliana (taxid:3702)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 188/328 (57%), Positives = 233/328 (71%)

Query:     1 MCTVITPSKD-HKSLCGPA-----------GGCTRHTIGGLVWNIPDRKKMEEHLLFWIG 48
             +C+ I+PSKD  +S+  P                 + +GGL W++P+  K+E++LLFWIG
Sbjct:   164 LCSFISPSKDPRESMEHPRPYSESDSSDSLSSSRSYRLGGLTWDLPEGSKIEDYLLFWIG 223

Query:    49 SDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVG 108
             SD+SAFANVVLTFNGC+IVRYDA E+ L+T+  Q  +ILKRRYYLVEKAKDANIIG+LVG
Sbjct:   224 SDSSAFANVVLTFNGCDIVRYDAEEDSLVTEFYQQRRILKRRYYLVEKAKDANIIGILVG 283

Query:   109 TLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDS 168
             TLGVAGYLHMIH M+ LI+ AGKK+Y L MG+PNPAKLANFPECDVFI +SCAQTALLDS
Sbjct:   284 TLGVAGYLHMIHHMQALISAAGKKSYILAMGRPNPAKLANFPECDVFIYISCAQTALLDS 343

Query:   169 KEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSS--SPVEGSDQAEEARFSFLKGGY 226
             KEF++PVITPFEA LAF RG++WTGAY+M F+D+++S  S  E    +EE RFSF +GGY
Sbjct:   344 KEFMSPVITPFEANLAFSRGSEWTGAYLMHFQDVINSVKSESEAHIGSEEPRFSFFQGGY 403

Query:   227 VED-VAQPETXXXXXXXXXXXXXXXXXXXXLQLRDRSLDPIVKGTA-KSGAEYFVSRSYH 284
             VED     +                     LQLR    + + K TA KSG EYF++R Y 
Sbjct:   404 VEDHKTNDQAKNGEEDTGETMTLVQAAEKALQLRGNDHNSLTKQTAAKSGPEYFLNRVYR 463

Query:   285 GLEMQCNSSSPEPYAIGRSGKASGYDDE 312
             GLE+   ++ PEPY +GRSGKASGY  E
Sbjct:   464 GLEINSENTLPEPYIVGRSGKASGYKHE 491

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|F1N8G4 DPH2 "Diphthamide biosynthesis protein 2" [Gallus gallus (taxid:9031)]

 Score = 410 (149.4 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 74/167 (44%), Positives = 116/167 (69%)

Query:    37 KKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEK 96
             +++++  +F++G++  A  + +LT+N      +D        +     + L RR YLVE+
Sbjct:   205 EELQDCSMFYVGAEGLALTSFMLTWNRFPFSSFDPATGHGRRETLNVNRALMRRLYLVER 264

Query:    97 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFI 156
             A+DA+++G+LVGTLGVAGYL ++  + +L+ +AGK++YTL +GKPNPAKLANF E D+F+
Sbjct:   265 ARDAHVVGILVGTLGVAGYLDVLEHLHQLVRRAGKRSYTLSVGKPNPAKLANFLEVDIFV 324

Query:   157 NVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLM 203
              V+CAQ +LLDS EF  P++TP+E  LA     +WTG Y+ +FRDL+
Sbjct:   325 LVACAQNSLLDSSEFYRPIVTPYELELACNPAREWTGNYLTDFRDLL 371

GO:0005737 "cytoplasm" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

UNIPROTKB|F1P2X6 DPH2 "Diphthamide biosynthesis protein 2" [Gallus gallus (taxid:9031)]

 Score = 410 (149.4 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 74/167 (44%), Positives = 116/167 (69%)

Query:    37 KKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEK 96
             +++++  +F++G++  A  + +LT+N      +D        +     + L RR YLVE+
Sbjct:   209 EELQDCSMFYVGAEGLALTSFMLTWNRFPFSSFDPATGHGRRETLNVNRALMRRLYLVER 268

Query:    97 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFI 156
             A+DA+++G+LVGTLGVAGYL ++  + +L+ +AGK++YTL +GKPNPAKLANF E D+F+
Sbjct:   269 ARDAHVVGILVGTLGVAGYLDVLEHLHQLVRRAGKRSYTLSVGKPNPAKLANFLEVDIFV 328

Query:   157 NVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLM 203
              V+CAQ +LLDS EF  P++TP+E  LA     +WTG Y+ +FRDL+
Sbjct:   329 LVACAQNSLLDSSEFYRPIVTPYELELACNPAREWTGNYLTDFRDLL 375

GO:0005737 "cytoplasm" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

UNIPROTKB|Q5ZKI2 DPH2 "Diphthamide biosynthesis protein 2" [Gallus gallus (taxid:9031)]

 Score = 410 (149.4 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 74/167 (44%), Positives = 116/167 (69%)

Query:    37 KKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEK 96
             +++++  +F++G++  A  + +LT+N      +D        +     + L RR YLVE+
Sbjct:   205 EELQDCSMFYVGAEGLALTSFMLTWNRFPFSSFDPATGHGRRETLNVNRALMRRLYLVER 264

Query:    97 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFI 156
             A+DA+++G+LVGTLGVAGYL ++  + +L+ +AGK++YTL +GKPNPAKLANF E D+F+
Sbjct:   265 ARDAHVVGILVGTLGVAGYLDVLEHLHQLVRRAGKRSYTLSVGKPNPAKLANFLEVDIFV 324

Query:   157 NVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLM 203
              V+CAQ +LLDS EF  P++TP+E  LA     +WTG Y+ +FRDL+
Sbjct:   325 LVACAQNSLLDSSEFYRPIVTPYELELACNPAREWTGNYLTDFRDLL 371

GO:0005737 "cytoplasm" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

POMBASE|SPBC17D1.02 dph2 "diphthamide biosynthesis protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 96/309 (31%), Positives = 165/309 (53%)

Query:    22 TRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGC--EIVRYDATEERLLTD 79
             T +TI G  +++P    +++  L +IG D+   ++++++      + + +D    +++ +
Sbjct:   194 TSYTIPGRTYSLPKSLSLQDMTLLYIGPDSPTLSSILMSHYSLVNQFLSFDPLSNKIVEE 253

Query:    80 VSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 139
              S     L+RRY LV++ +DA +IG+++GTLGV  YLH+++Q++++I  AGKK Y L +G
Sbjct:   254 SSFTGAKLRRRYALVQRCRDAGVIGIVIGTLGVHRYLHVLNQLRKMILNAGKKPYMLAVG 313

Query:   140 KPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEF 199
             K NPAKLANF E + F+ ++C + +L+DSKEF  P++TPFE + A      W   +++ F
Sbjct:   314 KLNPAKLANFQEIECFVLIACGENSLIDSKEFYRPIVTPFELVKALSSDMSWNNDFILSF 373

Query:   200 RDLM-------SSSPVEG-SDQAEEARFSFLKGGYVEDVAQPETXXXXXXXXXXXXXXXX 251
              +++       S  P E  ++++ E  FS + G +V     P                  
Sbjct:   374 DEVLKLSEGKQSKEPSEVLTEESAEPHFSLITGKFVNST--PMRHLDVTLETADAKNNDS 431

Query:   252 XXXXLQLRD-RSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYD 310
                 ++ R  RSL   V G     A +  S+S+ GL+       P     G+SG A GY 
Sbjct:   432 SSASIEKRGMRSL--AVNGVYSPAAAFLQSKSWSGLDSVDEGEGPSKLYEGQSGIAKGYV 489

Query:   311 DEKSKQEIQ 319
              E SK++IQ
Sbjct:   490 GEGSKEKIQ 498

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISO

GO:2000765 "regulation of cytoplasmic translation" evidence=IC

ZFIN|ZDB-GENE-030219-100 dph2 "DPH2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 99/288 (34%), Positives = 155/288 (53%)

Query:    28 GLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKIL 87
             G  + I + + + ++ +F+IG +     N ++++N C    ++        +  Q  K L
Sbjct:   209 GRQFRIKEGQTVNDYSIFYIGQEGLTLTNFMMSWNNCVFSSFNPETSTGRVESVQINKAL 268

Query:    88 KRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA 147
              +RYY +E+AKDA+++G+LVGTLGVA YL +I Q+K+ I +AGKK+Y   MGK N  KLA
Sbjct:   269 MKRYYAIERAKDASVVGILVGTLGVANYLIIIEQLKDTIQRAGKKSYMFAMGKINVPKLA 328

Query:   148 NFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLM--SS 205
             NF E D+++ V+C + +LLDS EF  PV+TPFE  LA  +  +WTG YV +FR+L+   S
Sbjct:   329 NFLEIDIYVLVACPENSLLDSSEFYRPVVTPFEMELACNKHREWTGEYVTDFRELLPGGS 388

Query:   206 SPVEGSDQAEEARFSFLKGGYVEDVAQPETXXXXXXXXXXXXXXXXXXXXLQLRDRSLDP 265
             S V   + ++ A           DV+                        L LR+++L  
Sbjct:   389 SHVGFPEPSQSATEE-----ETTDVSLITGALRSCSTNSSEMMHNSETSSLVLRNQTLT- 442

Query:   266 IVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAI-GRSGKASGYDDE 312
              V  T  + A +   RS+ GLE +   + P   A+ G+ G A  Y++E
Sbjct:   443 -VANT-NAAASFLAGRSWQGLEPKLGQT-PVVKAVKGQRGIAIAYEEE 487

GO:0005737 "cytoplasm" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

DICTYBASE|DDB_G0295687 dph2 "diphthamide biosynthesis protein 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 341 (125.1 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
 Identities = 67/174 (38%), Positives = 103/174 (59%)

Query:    26 IGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLK 85
             I G      + K +++    WIG ++    N+++ FN   + RY   + +LL +     K
Sbjct:   291 ISGRKIEFKNEKDIKKFNFIWIGEESLTLTNLLMNFNQQMVYRYYIDDNKLLQETLPRNK 350

Query:    86 ILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK 145
              L RRY++ EK KDA+IIG++V TL V  Y   I  +K+LI  +GKK Y  V+G+ N  K
Sbjct:   351 SLMRRYHISEKCKDASIIGIVVSTLSVQKYSETIDGLKKLIIASGKKPYVFVVGRLNVPK 410

Query:   146 LANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEF 199
             LANF E D+++ V+C +  ++DSK+F  P+ TPFE  L+  R  +WTG Y+ +F
Sbjct:   411 LANFSEIDIYVIVACHENTMVDSKDFYKPIATPFELNLSL-RNEKWTGEYITDF 463

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0003674 "molecular_function" evidence=ND

RGD|1304634 Dph2 "DPH2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 256 (95.2 bits), Expect = 7.8e-26, Sum P(2) = 7.8e-26
 Identities = 54/127 (42%), Positives = 79/127 (62%)

Query:    85 KILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA 144
             ++  RR YLVE+A+DA ++G+LVGTLGVA +L  +  +++L   AGK++Y L +GKP PA
Sbjct:   266 RLRARRLYLVERARDARVVGLLVGTLGVAQHLEALAHLRKLTEAAGKRSYVLALGKPTPA 325

Query:   145 KLANFPECDVFINVSCAQTALL--DSKEFLAPVITPFEAMLAFGRGTQWTGA--YVMEFR 200
             KLANFPE DVF+ ++C   AL    S  F  P++TP E   A        G   ++  + 
Sbjct:   326 KLANFPEMDVFVLLACPLGALTLQPSGGFFRPILTPCELEAACNPAWPPPGLAPHLTHYA 385

Query:   201 DLMSSSP 207
             +L+  SP
Sbjct:   386 ELLPGSP 392

GO:0005737 "cytoplasm" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

UNIPROTKB|B4DNI8 DPH2 "cDNA FLJ55730, highly similar to Homo sapiens DPH2 homolog (DPH2), transcript variant 1, mRNA" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 51/127 (40%), Positives = 75/127 (59%)

Query:    85 KILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA 144
             ++  RR YLVE+A+DA ++G+L GTLGVA +   +  ++ L   AGK++Y L +G+P PA
Sbjct:   131 RLRARRRYLVERARDARVVGLLAGTLGVAQHREALAHLRNLTQAAGKRSYVLALGRPTPA 190

Query:   145 KLANFPECDVFINVSCAQTALLD--SKEFLAPVITPFEAMLAFGRGTQWTGA--YVMEFR 200
             KLANFPE DVF+ ++C   AL    S  F  P++ P E   A        G   ++  + 
Sbjct:   191 KLANFPEVDVFVLLACPLGALAPQLSGSFFQPILAPCELEAACNPAWPPPGLAPHLTHYA 250

Query:   201 DLMSSSP 207
             DL+  SP
Sbjct:   251 DLLPGSP 257

GO:0005737 "cytoplasm" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

UNIPROTKB|H0YCR5 DPH2 "Diphthamide biosynthesis protein 2" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 51/127 (40%), Positives = 75/127 (59%)

Query:    85 KILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA 144
             ++  RR YLVE+A+DA ++G+L GTLGVA +   +  ++ L   AGK++Y L +G+P PA
Sbjct:    39 RLRARRRYLVERARDARVVGLLAGTLGVAQHREALAHLRNLTQAAGKRSYVLALGRPTPA 98

Query:   145 KLANFPECDVFINVSCAQTALLD--SKEFLAPVITPFEAMLAFGRGTQWTGA--YVMEFR 200
             KLANFPE DVF+ ++C   AL    S  F  P++ P E   A        G   ++  + 
Sbjct:    99 KLANFPEVDVFVLLACPLGALAPQLSGSFFQPILAPCELEAACNPAWPPPGLAPHLTHYA 158

Query:   201 DLMSSSP 207
             DL+  SP
Sbjct:   159 DLLPGSP 165

GO:0005737 "cytoplasm" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034648001	SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (482 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023426001	SubName- Full=Chromosome undetermined scaffold_30, whole genome shotgun sequence; (426 aa)				•	•		•	•	0.593
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•					0.480
	GSVIVG00014439001	RecName- Full=Diphthine synthase; EC=2.1.1.98;; Required for the methylation step in diphthamid [...] (285 aa)				•			•		0.463
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•					0.460

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	319
TIGR00322	319	TIGR00322, diphth2_R, diphthamide biosynthesis enz	8e-57
TIGR00272	496	TIGR00272, DPH2, diphthamide biosynthesis protein	4e-45
pfam01866	300	pfam01866, Diphthamide_syn, Putative diphthamide s	7e-36
COG1736	347	COG1736, DPH2, Diphthamide synthase subunit DPH2 [	1e-29
TIGR03682	308	TIGR03682, arCOG04112, diphthamide biosynthesis en	7e-15

>gnl|CDD|232919 TIGR00322, diphth2_R, diphthamide biosynthesis enzyme Dph1/Dph2 domain

 Score =  185 bits (473), Expect = 8e-57
 Identities = 69/189 (36%), Positives = 99/189 (52%), Gaps = 19/189 (10%)

Query: 2   CTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTF 61
             +I   K      G   GCT             R    + +L +IG        + L  
Sbjct: 145 PVIIPQGKPRVLSPGQVLGCTFP---------ALRNDEVDAVLIFIGDGRFHLLGLALAT 195

Query: 62  NGCEIVRYD-----ATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYL 116
              ++  YD      TEE    +     K+L+RRY L+EKAKDA  +G++VGTLG  G L
Sbjct: 196 PKPKVYVYDPYSGELTEEEYDAN-----KLLRRRYALIEKAKDAKKVGIIVGTLGGQGRL 250

Query: 117 HMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVI 176
            +  ++KEL+ KAGKKAY + +G+ NPAKLANFPE D F+  +C + ++ D K+F  PV+
Sbjct: 251 ELAERLKELLKKAGKKAYLISVGEINPAKLANFPEIDAFVQTACPRLSIDDGKDFYKPVL 310

Query: 177 TPFEAMLAF 185
           TP+E  +A 
Sbjct: 311 TPYELEMAL 319

Archaea and Eukaryotes, but not Eubacteria, share the property of having a covalently modified residue, 2'-[3-carboxamido-3-(trimethylammonio)propyl]histidine, as a part of a cytosolic protein. The modified His, termed diphthamide, is part of translation elongation factor EF-2 and is the site for ADP-ribosylation by diphtheria toxin. This model includes both Dph1 and Dph2 from Saccharomyces cerevisiae, although only Dph2 is found in the Archaea (see TIGR03682). Dph2 has been shown to act analogously to the radical SAM (rSAM) family (pfam04055), with 4Fe-4S-assisted cleavage of S-adenosylmethionine to create a free radical, but a different organic radical than in rSAM. Length = 319

>gnl|CDD|232900 TIGR00272, DPH2, diphthamide biosynthesis protein 2

 Score =  159 bits (404), Expect = 4e-45
 Identities = 93/300 (31%), Positives = 148/300 (49%), Gaps = 17/300 (5%)

Query: 22  TRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVV--LTFNGCEIV-RYDATEERLLT 78
            +    G  +++P+    +E  L   G  +S   +++   T+     V ++    + +L 
Sbjct: 199 EKFVTIGRTFHVPEDVDQQEKNLVLFGQHSSEDLHLIHLTTYQDLSTVFQFVPIFDPILP 258

Query: 79  D-VSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLV 137
           + V+ P   L+RRY LV  A+DA  IG++VGTLGV      I++++++I  AGKK Y  V
Sbjct: 259 ESVTGPFPSLRRRYKLVHVARDAGCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFV 318

Query: 138 MGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVM 197
           +GKPNPAKLANF + D+F+ + C+Q+ ++DS EF  P++TPFE  LA      W   +  
Sbjct: 319 VGKPNPAKLANFEDIDIFVLLGCSQSGIIDSNEFYRPIVTPFELNLALSEEVTWVVDFRD 378

Query: 198 EFRDLM-------SSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALAN 250
              ++        + SP   SD+     FS ++G Y    ++P       E E A    N
Sbjct: 379 SIDEIEQLLGGQDTISPSTTSDE-AAPEFSLIRGKYT-STSRPLRALTHLELEAA---DN 433

Query: 251 AAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSS-PEPYAIGRSGKASGY 309
              K    R  +   ++KGT  + A    +RS+ GL    +S+        G SG A GY
Sbjct: 434 DDSKQSTTRHTASGAVIKGTVSTSASALQNRSWKGLGDDVDSTEVDAKIEEGISGIARGY 493

This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin [Protein fate, Protein modification and repair]. Length = 496

>gnl|CDD|216748 pfam01866, Diphthamide_syn, Putative diphthamide synthesis protein

 Score =  130 bits (330), Expect = 7e-36
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 10/143 (6%)

Query: 47  IGSDNSAFANVVLTFNGCEIVRYDA---TEERLLTDVSQPLKILKRRYYLVEKAKDANII 103
           +G        + L+  G  +  YD      E    D     K+L+RRY  +EKAKDA   
Sbjct: 153 VGDGRFHPLGIALS-TGKPVYAYDPYSLEVEEYDAD-----KMLRRRYAAIEKAKDAKSF 206

Query: 104 GVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQT 163
           G++VGT G  G   +  ++K+L+ + GK+AY +++ + NP KLANF   D F+  +C + 
Sbjct: 207 GIIVGTKGGQGRPDLARRLKKLLKERGKRAYLILLDEINPDKLANFD-VDAFVQTACPRL 265

Query: 164 ALLDSKEFLAPVITPFEAMLAFG 186
           ++ D   F  P++TP+EA +A G
Sbjct: 266 SIDDGYRFPKPLLTPYEAEIALG 288

Human DPH1 is a candidate tumour suppressor gene. DPH2 from yeast, which confers resistance to diphtheria toxin, has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown. Length = 300

>gnl|CDD|224650 COG1736, DPH2, Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]

 Score =  115 bits (289), Expect = 1e-29
 Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 65  EIVRYDATEERLLTDVS-QPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMK 123
            +   D      + +   +  + L++RY  + KA DA   G++V T G    L +  ++ 
Sbjct: 202 PVFAIDPYS-GKVREEDPEADRFLRKRYAAISKALDAKSFGIIVSTKGGQRRLEVARELV 260

Query: 124 ELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAML 183
           +L+ +AGK+ Y +V+ + +P KLANF + D F+N +C +  + D   F  P++TP+E  +
Sbjct: 261 KLLKEAGKEVYLIVVDEISPDKLANFDDIDAFVNTACPRIPIDDGDRFKKPLLTPYEFEI 320

Query: 184 AFG 186
           A G
Sbjct: 321 ALG 323

Length = 347

>gnl|CDD|234308 TIGR03682, arCOG04112, diphthamide biosynthesis enzyme Dph2

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 1/102 (0%)

Query: 85  KILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA 144
           K L+ RY  + KA DA   G+LV T        +  ++K+L+ + GK+A  +++   +P 
Sbjct: 197 KFLRVRYARISKALDAKKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPD 256

Query: 145 KLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFG 186
           +L N    D ++N +C + A+ D   F  PV+TP E  +  G
Sbjct: 257 QLRNLD-FDAYVNTACPRIAIDDYARFKKPVLTPQEFEIVLG 297

Members of this family are the archaeal protein Dph2, members of the universal archaeal protein family designated arCOG04112. The chemical function of this protein is analogous to the radical SAM family (pfam04055), although the sequence is not homologous. The chemistry involves [4Fe-4S]-aided formation of a 3-amino-3-carboxypropyl radical rather than the canonical 5'-deoxyadenosyl radical of the radical SAM family. Length = 308

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
TIGR00272	496	DPH2 diphthamide biosynthesis protein 2. This prot	100.0
KOG2648	453	consensus Diphthamide biosynthesis protein [Transl	100.0
TIGR00322	332	diphth2_R diphthamide biosynthesis protein 2-relat	100.0
PF01866	307	Diphthamide_syn: Putative diphthamide synthesis pr	100.0
TIGR03682	308	arCOG04112 arCOG04112 universal archaeal diphthami	100.0
COG1736	347	DPH2 Diphthamide synthase subunit DPH2 [Translatio	100.0
PRK09492	315	treR trehalose repressor; Provisional	83.86

>TIGR00272 DPH2 diphthamide biosynthesis protein 2

Probab=100.00  E-value=2.5e-72  Score=566.21  Aligned_cols=285  Identities=30%  Similarity=0.494  Sum_probs=231.1

Q ss_pred             CCCCCcccceeCCeeeecCCCCCCCceeEEEEcCCcc-hHHHHHHhcC-C-CeEEEEcCCCCccccccCc-HHHHHHHHH
Q 020984           16 GPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNS-AFANVVLTFN-G-CEIVRYDATEERLLTDVSQ-PLKILKRRY   91 (319)
Q Consensus        16 ~~~~gct~~~i~~~~~~l~~~~~~~~~~i~~Ig~~~~-~l~~l~l~~~-~-~~v~~yDP~s~~~~~e~~~-~~k~l~~R~   91 (319)
                      |.++|||.+...+        ...+++.+||||++++ ++.+++|+.+ . +++|+|||+++++..+.++ +.++|||||
T Consensus       201 ~~vlGc~~~~~~~--------~~~~~~~~l~IG~~~~g~f~~l~l~~~~~~~~v~~~dP~~~~~~~~~~~~~~~~L~rRy  272 (496)
T TIGR00272       201 FVTIGRTFHVPED--------VDQQEKNLVLFGQHSSEDLHLIHLTTYQDLSTVFQFVPIFDPILPESVTGPFPSLRRRY  272 (496)
T ss_pred             ceecCccccCccc--------cccccceEEEEcCCCchhhhHhhhhcCCCCCceEEECCCCCcceecccchHHHHHHHHH
Confidence            4477777665543        2345678999999777 7777877543 5 6799999999999888766 999999999


Q ss_pred             HHHHhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCcccccccCC
Q 020984           92 YLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEF  171 (319)
Q Consensus        92 ~~I~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~sidd~~~f  171 (319)
                      ++|+||++|++||||||||++|+|++++++|+++|+++|||+|+|+||+|||+||+||++||+||++||||++|||+++|
T Consensus       273 ~~I~kA~~A~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKLaNF~eID~fV~vaCPr~sidd~~~F  352 (496)
T TIGR00272       273 KLVHVARDAGCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKPNPAKLANFEDIDIFVLLGCSQSGIIDSNEF  352 (496)
T ss_pred             HHHHHHhcCCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCCCCCEEEEccCCCcccccHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCHHHHHHhhCCCCCCCcceeeccccccCC--CC----CCCCCcccccceeeecCceeccCCCCCcCCcchhhhhH
Q 020984          172 LAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSS--SP----VEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGA  245 (319)
Q Consensus       172 ~kPvlTP~El~vAL~~~~~W~~~y~~Df~~ll~~--~~----~~~~~~~~~p~fslitG~~~~~~~~~~~~~~~~~~~~~  245 (319)
                      +||||||||++|||+.+..|.+.|..+|..+...  +.    .+..+++++|+||||||+|++++++++...+.+...  
T Consensus       353 ~KPVlTP~ElelAL~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~fslitG~~~~~~~~~~~~~~~~~~~--  430 (496)
T TIGR00272       353 YRPIVTPFELNLALSEEVTWVVDFRDSIDEIEQLLGGQDTISPSTTSDEAAPEFSLIRGKYTSTSRPLRALTHLELEA--  430 (496)
T ss_pred             CCceecHHHHHHHhCCcccccchHHHHhhhhhhcccccccCCCccccccCCCceeccccceeecCCccchhhhccccc--
Confidence            9999999999999998777998888888776532  11    111223468999999999999887765222111000  


Q ss_pred             HHhhhhhhhhhhhccCCCCceeecccChHHHHhhcCccccCCCCCCC-CCCcccccCcccccCCCCCc
Q 020984          246 LALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNS-SSPEPYAIGRSGKASGYDDE  312 (319)
Q Consensus       246 ~~~~~~~~~~l~~~~~~~~~~~~~~~s~~a~~L~~Rtw~GLe~~~g~-~~~~~~~~GrsGIA~gY~~e  312 (319)
                        .....+.++..+.+...+++++++|+||+||++||||||++++|+ ++++.++|||+||||||++|
T Consensus       431 --~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~l~~Rtw~GL~~~~~~~~~~a~~~eGrsGIA~gY~~~  496 (496)
T TIGR00272       431 --ADNDDSKQSTTRHTASGAVIKGTVSTSASALQNRSWKGLGDDVDSTEVDAKIEEGISGIARGYGGD  496 (496)
T ss_pred             --cCCCCccceeecccCcceeeccccccHHHHhhcCceeCCCCCcCCCCCcceeecCCccccccCCCC
Confidence              001222345444433335667788999999999999999999986 45789999999999999865

This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.

>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-65  Score=503.68  Aligned_cols=276  Identities=35%  Similarity=0.562  Sum_probs=225.6

Q ss_pred             CcccCCCccccccCCCCCCcccceeCCeeeecCCCCCCCceeEEEEcCCcchHHHHHHhcCCCeEEEEcCCCCccccccC
Q 020984            2 CTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVS   81 (319)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~gct~~~i~~~~~~l~~~~~~~~~~i~~Ig~~~~~l~~l~l~~~~~~v~~yDP~s~~~~~e~~   81 (319)
                      +.|+.|+..--| -|+++|||+|.+.++         .++.++|||||++||++..|+.+|..++|+|||++++++.|.+
T Consensus       178 ~~~i~Pq~~p~s-~~e~lG~t~p~~~~~---------~~~~~li~iGD~~~~le~~mi~np~~~~~~ydp~s~kl~~E~y  247 (453)
T KOG2648|consen  178 LEVILPQFKPLS-PGEVLGCTSPLLEGR---------EEYDALIFIGDGRFHLESSMIANPGLPAYRYDPYSKKLTRESY  247 (453)
T ss_pred             eEEeccCCCCCC-CccccceeccCCCCc---------cccceEEEecCCCcchhHHHHhCCCCCeEEeCCccCceeeccc
Confidence            356777777333 788999999999874         4567899999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCC
Q 020984           82 QPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCA  161 (319)
Q Consensus        82 ~~~k~l~~R~~~I~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCP  161 (319)
                      ++.+|+++||++|+|||+|++||||+||||+|||++++++|+++|+++|||+|+|+||||||+|||||++|||||+||||
T Consensus       248 ~~~~m~~rR~~~vekardA~~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKLAnF~eIDvfV~iaCp  327 (453)
T KOG2648|consen  248 DHSRMLRRRYYLVEKARDARTIGLIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGEINPAKLANFPEIDVFVQIACP  327 (453)
T ss_pred             chHHHHHHHHHHHHHHhcCCeEEEEEecccccCCHHHHHHHHHHHHHcCCceEEEEecCCCHHHhcCCccccEEEEEeCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCCcccCHHHHHHhhCCCCCCCcceeeccccccCCCCCCCCCcccccceeeecCceeccCCCCCcCCcchh
Q 020984          162 QTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEE  241 (319)
Q Consensus       162 r~sidd~~~f~kPvlTP~El~vAL~~~~~W~~~y~~Df~~ll~~~~~~~~~~~~~p~fslitG~~~~~~~~~~~~~~~~~  241 (319)
                      |+++||+++|+||||||||+++||+.. .|.+.|.++|........    .+.+++.  ...|.|-.+..........  
T Consensus       328 ~lsid~s~~F~kPiltPfEa~~Al~~~-~W~~~~~~~~~~~~~~~~----~~~~~~~--~~~~d~pm~~~~~~~~~~~--  398 (453)
T KOG2648|consen  328 RLSIDWSKEFYKPLLTPFEAEVALNPI-AWTGDYLAPFVTAIKLLL----KESEFHS--SELGDYPMDYYSLGSLGPP--  398 (453)
T ss_pred             ccchhhhhhhccccccHHHHHHhcCcc-ccCCccccchhhHHhhhh----ccccccc--cccccCcccccccccCCcC--
Confidence            999999999999999999999999986 999999999977754322    1111111  2334332211111000000  


Q ss_pred             hhhHHHhhhhhhhhhhhccCCCCceeecccChHHHHhhcCccccCCCCCCCCCCcccccCcccccCCCCCc
Q 020984          242 KEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDE  312 (319)
Q Consensus       242 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~a~~L~~Rtw~GLe~~~g~~~~~~~~~GrsGIA~gY~~e  312 (319)
                            .+..        +.....  .+..++|+.||++|+||||+++.+++++++..+||||||+||.+|
T Consensus       399 ------~~~~--------~~~~~~--~~~~~~a~~~~~~rsw~gLd~~~~~~~~~~~~~Grsgia~gy~~~  453 (453)
T KOG2648|consen  399 ------PAWT--------SSNDHG--AGESSPAISFLQNRSWQGLDPRLGQTPPTKLVSGRSGIAIGYSDE  453 (453)
T ss_pred             ------cccC--------Cccccc--ccccccccchhccccccCCCcCCCCCCccchhccccccccccCCC
Confidence                  0000        000000  122356788999999999999999999999999999999999875

>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain

Probab=100.00  E-value=1.1e-50  Score=391.93  Aligned_cols=175  Identities=24%  Similarity=0.399  Sum_probs=162.5

Q ss_pred             ccCCCCCCcccceeCCeeeecCCCCCCCceeEEEEcCCcchHHHHHHhcCCCeEEEEcCCCCccccccCcHHHHHHHHHH
Q 020984           13 SLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYY   92 (319)
Q Consensus        13 ~~~~~~~gct~~~i~~~~~~l~~~~~~~~~~i~~Ig~~~~~l~~l~l~~~~~~v~~yDP~s~~~~~e~~~~~k~l~~R~~   92 (319)
                      .--|+++||+.+.+.+.        ..  .+++|||+|+||++++||.+ +++||+|||+++++..+..++++++|+||+
T Consensus       156 ~~~g~vLGC~~~~~~~~--------~~--d~~l~vg~g~FH~~~~~l~~-~~~v~~~DP~s~~~~~~~~~~~~~l~rR~~  224 (332)
T TIGR00322       156 LSRGQVLGCNSEVLRGE--------QA--DAMVFIGDGRFHPLGAAIHT-EKEVFKYDPYSGEFTRIGEDAKQFVKVRAL  224 (332)
T ss_pred             CCCccccCCCcCCCCCC--------CC--CEEEEEcCCcchHHHHHHHc-CCcEEEECCCCCceeEccccHHHHHHHHHH
Confidence            34688999998876432        12  37999999999999999965 899999999999998888889999999999


Q ss_pred             HHHhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCcccccccCCC
Q 020984           93 LVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFL  172 (319)
Q Consensus        93 ~I~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~sidd~~~f~  172 (319)
                      +|+||++|++||||+|||++|+|++++++|+++|+++|||+|+|+||+|||+||+||++||+||++||||+++||+++|+
T Consensus       225 ~I~ka~~A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf~eiD~fV~~aCPr~sidd~~~f~  304 (332)
T TIGR00322       225 AISKARKGKKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKLLMFDQIDVFVQVACPRIAIDDGYLFN  304 (332)
T ss_pred             HHHHHhcCCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCCCcCEEEEecCCCceecchhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCHHHHHHhhCCCCCCCcceeeccc
Q 020984          173 APVITPFEAMLAFGRGTQWTGAYVMEFR  200 (319)
Q Consensus       173 kPvlTP~El~vAL~~~~~W~~~y~~Df~  200 (319)
                      ||||||||+++||+. +.|. .|+|||+
T Consensus       305 kPvlTP~E~e~al~~-~~~~-~y~~d~~  330 (332)
T TIGR00322       305 KPLLTPYEFELLLKK-RVEK-YYPMDEI  330 (332)
T ss_pred             CccccHHHHHHHhCc-cccc-cCCCcee
Confidence            999999999999997 5696 5999986

Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.

>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis

Probab=100.00  E-value=2.3e-50  Score=385.74  Aligned_cols=176  Identities=41%  Similarity=0.744  Sum_probs=127.9

Q ss_pred             ccCCCCCCcccceeCCeeeecCCCCCCCceeEEEEcCCcchHHHHHHhcCCCeEEEEcCCCCccccc--cCcHHHHHHHH
Q 020984           13 SLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTD--VSQPLKILKRR   90 (319)
Q Consensus        13 ~~~~~~~gct~~~i~~~~~~l~~~~~~~~~~i~~Ig~~~~~l~~l~l~~~~~~v~~yDP~s~~~~~e--~~~~~k~l~~R   90 (319)
                      ...|+++||+.+.+...         .+.+.++|||+|+||+++++|+ +.+++|+|||+++++..+  ..+.+++|++|
T Consensus       130 ~~~g~vlGc~~~~~~~~---------~~~~~~l~IG~g~fh~~~l~l~-~~~~v~~~dP~~~~~~~e~~~~~~~~~l~~R  199 (307)
T PF01866_consen  130 LSPGQVLGCTYPSADSL---------DDDDAILFIGGGRFHLLGLMLS-PGKPVYRYDPYSKTLSVEDISYDIERLLRRR  199 (307)
T ss_dssp             SSTTB-BTTB-GGG-S-----------S-SEEEEESSSSHHHHHHHHH-H-SEEEEE-TT--T--EEE----THHHHHHH
T ss_pred             CCcccccCCccCccccc---------ccccEEEEEcCCchHHHHHHHh-cCCCEEEeCCCcccceeecccccHHHHHHHH
Confidence            56799999999998863         3457899999999999999999 999999999998777766  56899999999


Q ss_pred             HHHHHhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCcccccccC
Q 020984           91 YYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKE  170 (319)
Q Consensus        91 ~~~I~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~sidd~~~  170 (319)
                      |++|+||++|++||||+|||++|+|+.++++|+++|+++|||+|+|+||+|||+||+||++||+||++||||+++||+++
T Consensus       200 ~~~i~ka~~a~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf~eid~fV~~aCPr~~idd~~~  279 (307)
T PF01866_consen  200 YALIEKAKDAKTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANFPEIDAFVQIACPRLSIDDSKD  279 (307)
T ss_dssp             HHHHHHHTT--EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS---SEEEE-S-THHHHT--S-
T ss_pred             HHHHHHHhcCCEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcCcccCEEEEecCCCcccCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCHHHHHHhhCCCCCCCcceeeccc
Q 020984          171 FLAPVITPFEAMLAFGRGTQWTGAYVMEFR  200 (319)
Q Consensus       171 f~kPvlTP~El~vAL~~~~~W~~~y~~Df~  200 (319)
                      |+||||||||++|||+.. .| +.|+|||+
T Consensus       280 f~kPvltP~E~~~al~~~-~~-~~Y~~D~~  307 (307)
T PF01866_consen  280 FYKPVLTPYELEVALNER-EW-GEYPMDEI  307 (307)
T ss_dssp             -SS-EE-HHHHHHHTTS--S---S------
T ss_pred             cCCcccCHHHHHHHhCCc-cc-CcCCCCcC
Confidence            999999999999999973 35 79999985

Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.

>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein

Probab=100.00  E-value=1.1e-49  Score=381.61  Aligned_cols=170  Identities=24%  Similarity=0.378  Sum_probs=158.6

Q ss_pred             CCCCCCcccceeCCeeeecCCCCCCCceeEEEEcCCcchHHHHHHhcCCCeEEEEcCCCCccccccCcHHHHHHHHHHHH
Q 020984           15 CGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLV   94 (319)
Q Consensus        15 ~~~~~gct~~~i~~~~~~l~~~~~~~~~~i~~Ig~~~~~l~~l~l~~~~~~v~~yDP~s~~~~~e~~~~~k~l~~R~~~I   94 (319)
                      .|+++||+.+...+.          +..+++|||+|+||++.++| +|++++|+|||+++++..+..++++++|+||++|
T Consensus       138 ~g~vlGC~~~~~~~~----------~~d~~~~vg~g~Fh~~~l~l-~~~~~v~~~DP~~~~~~~~~~~~~~~l~~R~~~I  206 (308)
T TIGR03682       138 PGQVLGCNFSAARSV----------DADAFLFVGTGLFHPLGLAL-ATNKPVYAADPFSGEVEDIEAEIDKFLRVRYARI  206 (308)
T ss_pred             CceeeCccccCCCCC----------CccEEEEEcCCcchHHHHHh-ccCCcEEEECCCCCceEeechhHHHHHHHHHHHH
Confidence            578899997765431          12379999999999999999 8999999999999999888888999999999999


Q ss_pred             HhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCcccccccCCCCc
Q 020984           95 EKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAP  174 (319)
Q Consensus        95 ~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~sidd~~~f~kP  174 (319)
                      +||++|++||||+|||++|+|++++++|+++|+++|||+|+|+||+|||+||+|| +||+||++||||+++||+++|+||
T Consensus       207 ~ka~~A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf-~iD~fV~~aCPr~sidd~~~f~kP  285 (308)
T TIGR03682       207 SKALDAKKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNL-DFDAYVNTACPRIAIDDYARFKKP  285 (308)
T ss_pred             HHHhhCCeEEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcC-CcCEEEEccCCCcccccHhhCCCc
Confidence            9999999999999999999999999999999999999999999999999999999 799999999999999999999999


Q ss_pred             ccCHHHHHHhhCCCCCCCcceeeccc
Q 020984          175 VITPFEAMLAFGRGTQWTGAYVMEFR  200 (319)
Q Consensus       175 vlTP~El~vAL~~~~~W~~~y~~Df~  200 (319)
                      ||||||+++||+. ++|   |+||+.
T Consensus       286 vlTP~E~~~al~~-~~~---y~~D~~  307 (308)
T TIGR03682       286 VLTPQEFEIVLGK-RSE---YVFDEI  307 (308)
T ss_pred             ccCHHHHHHHhCC-Ccc---ccCCcc
Confidence            9999999999997 789   999873

This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.

>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-40  Score=321.95  Aligned_cols=182  Identities=24%  Similarity=0.448  Sum_probs=165.3

Q ss_pred             cccCCCCCCcccceeCCeeeecCCCCCCCceeEEEEcCCcchHHHHHHhcCCCeEEEEcCCCCccccccCcHHHHHHHHH
Q 020984           12 KSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRY   91 (319)
Q Consensus        12 ~~~~~~~~gct~~~i~~~~~~l~~~~~~~~~~i~~Ig~~~~~l~~l~l~~~~~~v~~yDP~s~~~~~e~~~~~k~l~~R~   91 (319)
                      -.--|.++||+.+.+.|.          +.-+++|||+|.||++.+++. +.++|++|||+++++..+..++.+++++||
T Consensus       160 ~~~~gqVLGC~~~~~~~~----------~~d~~l~vg~G~FH~lg~~i~-~~~~v~~~dP~s~~~~~~~~~~~~~l~~R~  228 (347)
T COG1736         160 PAYPGQVLGCNFSVLEGV----------DADAVLYVGSGRFHPLGLAIR-TEKPVFAIDPYSGKVREEDPEADRFLRKRY  228 (347)
T ss_pred             ccCcceeeccccccCCcc----------ccceEEEEcCCccChhhcccc-cCCcEEEEcCCCCceeecchhhhHHHHHHH
Confidence            445678889988888761          124789999999999999999 899999999999999888888999999999


Q ss_pred             HHHHhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCcccccccCC
Q 020984           92 YLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEF  171 (319)
Q Consensus        92 ~~I~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~sidd~~~f  171 (319)
                      ++|.+|++|++||||+||+++|+++++++.|.++++++||++|+|+|+++||+||+||.+||+||++||||+++||+..|
T Consensus       229 ~~i~~a~~a~~~giiv~tk~gQ~r~~~~~~l~k~~~~~g~~~~li~~~~i~p~~L~~f~~iD~~v~taCPRi~iDd~~~f  308 (347)
T COG1736         229 AAISKALDAKSFGIIVSTKGGQRRLEVARELVKLLKEAGKEVYLIVVDEISPDKLANFDDIDAFVNTACPRIPIDDGDRF  308 (347)
T ss_pred             HHHHHHhcCCeEEEEEecccccCcHHHHHHHHHHHHHcCCceEEEEecCCCHHHHhcccceeEEEEecCCCcccchHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCHHHHHHhhCCCCCCCcceeeccccccCCC
Q 020984          172 LAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSS  206 (319)
Q Consensus       172 ~kPvlTP~El~vAL~~~~~W~~~y~~Df~~ll~~~  206 (319)
                      .||||||+|+++||+. +.| .+|.||+..-.+.+
T Consensus       309 ~kPlLTP~E~~~~l~~-~~~-~~y~~Dei~~~~~~  341 (347)
T COG1736         309 KKPLLTPYEFEIALGW-RSD-ERYAFDEIVGNDGG  341 (347)
T ss_pred             CCcccChHHHHHhhcc-Ccc-cccccceeecCCCC
Confidence            9999999999999992 333 68999886654433

>PRK09492 treR trehalose repressor; Provisional

Probab=83.86  E-value=4.4  Score=37.68  Aligned_cols=78  Identities=12%  Similarity=0.162  Sum_probs=50.6

Q ss_pred             ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecCCCcccccccCC
Q 020984           98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTALLDSKEF  171 (319)
Q Consensus        98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaCPr~sidd~~~f  171 (319)
                      +..++||+|+..+.-..+..+++.+.+.++++|....++.. .-++++.    ..+  ..+|.+|+.++.....+.-..+
T Consensus        60 ~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~l~~~  138 (315)
T PRK09492         60 QSDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYDPIIMES-QFSPEKVNEHLGVLKRRNVDGVILFGFTGITEEMLAPW  138 (315)
T ss_pred             CCCCeEEEEecCCcCcccHHHHHHHHHHHHHcCCeEEEEec-CCChHHHHHHHHHHHhcCCCEEEEeCCCcccHHHHHhc
Confidence            34579999999877677889999999999999987654433 3333322    222  1699999987532222222344


Q ss_pred             CCccc
Q 020984          172 LAPVI  176 (319)
Q Consensus       172 ~kPvl  176 (319)
                      .+|++
T Consensus       139 ~~pvv  143 (315)
T PRK09492        139 QDKLV  143 (315)
T ss_pred             CCCEE
Confidence            55654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
3lzc_A	378	Crystal Structure Of Dph2 From Pyrococcus Horikoshi		1e-06

>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii Length = 378

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 83  PLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN 142
           P + +++R+  + KA DA   GV+V        L    ++ +L+ K G++A  +VM   N
Sbjct: 247 PERFIRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVN 306
Query: 143 PAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFG 186
             KL  FP  + ++ V+C +  L D   +  PV+TP E  +  G
Sbjct: 307 YHKLEGFP-FEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILLG 349

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
3lzd_A	378	DPH2; diphthamide biosynthesis, radical SAM enzyme	8e-40
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A Length = 378

 Score =  142 bits (359), Expect = 8e-40
 Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 4/172 (2%)

Query: 27  GGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKI 86
           G ++       K+    + +IGS       + +     +++  D   +        P + 
Sbjct: 194 GQVLGCNYSVAKVRGEGILFIGSGIFHPLGLAVA-TRKKVLAIDPYTKAF--SWIDPERF 250

Query: 87  LKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL 146
           +++R+  + KA DA   GV+V        L    ++ +L+ K G++A  +VM   N  KL
Sbjct: 251 IRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKL 310

Query: 147 ANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVME 198
             FP  + ++ V+C +  L D   +  PV+TP E  +  G   ++    ++ 
Sbjct: 311 EGFP-FEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILLGLREEYEFDEILG 361

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 48/298 (16%), Positives = 77/298 (25%), Gaps = 83/298 (27%)

Query: 30  VWNIPDRKKMEEHLLFWIGSDNSA-----FANVVLTFN---------------GCEIVRY 69
           +    D        LFW            F   VL  N                     Y
Sbjct: 54  IIMSKDAVS-GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 70  DATEERLLTD--------VSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQ 121
               +RL  D        VS+    LK R  L  + + A  + ++ G LG          
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNV-LIDGVLG---------- 160

Query: 122 MKELITKAGKKAYTLVMGKPNPAKLANFPECDVF-INVSCAQT--ALLDSKEFLAPVITP 178
                  +GK    + +      K+    +  +F +N+    +   +L+  + L   I P
Sbjct: 161 -------SGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 179 FEAMLAFG--RGTQWTGAYVMEFRDLMSSSPVEGS----DQAEEAR----FSF------- 221
                +           +   E R L+ S P E         + A+    F+        
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 222 ---------LKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGT 270
                    L       ++           E    L     K L  R + L   V  T
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----KYLDCRPQDLPREVLTT 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
3lzd_A	378	DPH2; diphthamide biosynthesis, radical SAM enzyme	100.0
1byk_A	255	Protein (trehalose operon repressor); LACI family,	86.8
3hs3_A	277	Ribose operon repressor; PSI-II, NYSGXRC, periplas	84.42
3ixl_A	240	Amdase, arylmalonate decarboxylase; enantioselecti	80.01

>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A

Probab=100.00  E-value=2.2e-49  Score=386.45  Aligned_cols=167  Identities=23%  Similarity=0.335  Sum_probs=153.9

Q ss_pred             CCCCCCcccceeCCeeeecCCCCCCCceeEEEEcCCcchHHHHHHhcCCCeEEEEcCCCCccccccCcHHHHHHHHHHHH
Q 020984           15 CGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLV   94 (319)
Q Consensus        15 ~~~~~gct~~~i~~~~~~l~~~~~~~~~~i~~Ig~~~~~l~~l~l~~~~~~v~~yDP~s~~~~~e~~~~~k~l~~R~~~I   94 (319)
                      -|+++|||.+.+..           +..+++|||+|+||++++||+ |.+++|+|||+++++..+  ++++++|+||++|
T Consensus       193 ~gqvLGC~~~~~~~-----------~~d~~lyvG~g~FH~~~l~l~-~~~~v~~yDP~s~~~~~~--~~~~~l~rR~~~I  258 (378)
T 3lzd_A          193 PGQVLGCNYSVAKV-----------RGEGILFIGSGIFHPLGLAVA-TRKKVLAIDPYTKAFSWI--DPERFIRKRWAQI  258 (378)
T ss_dssp             TTBCBTTBCGGGCS-----------SCSEEEEESSSSHHHHHHHHH-HCSEEEEECTTTCCEEEC--CCHHHHHHHHHHH
T ss_pred             CCccccccCCCccc-----------CCceEEEEcCCchhHHHHHhc-cCCcEEEECCCCCceeec--cHHHHHHHHHHHH
Confidence            48999999987641           113789999999999999999 899999999999998654  5899999999999


Q ss_pred             HhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCcccccccCCCCc
Q 020984           95 EKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAP  174 (319)
Q Consensus        95 ~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~sidd~~~f~kP  174 (319)
                      +||++|++||||+|||++|+|+.++++|+++|+++|||+|+|+||+|||+||+|| +||+||++||||++|||+++|+||
T Consensus       259 ~kA~dA~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF-~iD~fV~vaCPrlsidd~~~F~KP  337 (378)
T 3lzd_A          259 AKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGF-PFEAYVVVACPRVPLDDYGAWRKP  337 (378)
T ss_dssp             HHHTTCCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTS-CCSEEEECSCTHHHHSCCSCCSSC
T ss_pred             HHHhcCCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCCEEEEecCCCccccchhhCCCc
Confidence            9999999999999999999999999999999999999999999999999999999 699999999999999999999999


Q ss_pred             ccCHHHHHHhhCCCCCCCcceeeccc
Q 020984          175 VITPFEAMLAFGRGTQWTGAYVMEFR  200 (319)
Q Consensus       175 vlTP~El~vAL~~~~~W~~~y~~Df~  200 (319)
                      ||||||++|||+...    .|+||+-
T Consensus       338 vLTPyE~evAL~~~~----~y~~dei  359 (378)
T 3lzd_A          338 VLTPKEVEILLGLRE----EYEFDEI  359 (378)
T ss_dssp             EECHHHHHHHTTSCC----SCCCCCC
T ss_pred             ccCHHHHHHHhCCCC----CCCCccc
Confidence            999999999999743    6676664

>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1

Probab=86.80  E-value=1.7  Score=37.48  Aligned_cols=77  Identities=9%  Similarity=0.097  Sum_probs=52.0

Q ss_pred             CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCCCcccccccCCCC
Q 020984          100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTALLDSKEFLA  173 (319)
Q Consensus       100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCPr~sidd~~~f~k  173 (319)
                      .++||+|+..+.-..+..+++.+++.++++|....++.. .-++++    +..+  ..+|.+|+.++.......-.....
T Consensus         2 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~l~~~~~   80 (255)
T 1byk_A            2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES-QFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQS   80 (255)
T ss_dssp             CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-TTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred             CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC-CCcHHHHHHHHHHHHhcCCCEEEEecCccccHHHHHhcCC
Confidence            478999999887777889999999999999987665543 334433    2222  379999998875433222233345


Q ss_pred             cccC
Q 020984          174 PVIT  177 (319)
Q Consensus       174 PvlT  177 (319)
                      |+|+
T Consensus        81 pvV~   84 (255)
T 1byk_A           81 SLVL   84 (255)
T ss_dssp             SEEE
T ss_pred             CEEE
Confidence            6553

>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}

Probab=84.42  E-value=2.5  Score=37.09  Aligned_cols=78  Identities=22%  Similarity=0.367  Sum_probs=53.9

Q ss_pred             hccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCCCcccccccC
Q 020984           97 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTALLDSKE  170 (319)
Q Consensus        97 a~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCPr~sidd~~~  170 (319)
                      .+..++||+|+..+....+..+++.+++.++++|..+.++.-..-++++    +..+  ..+|.+|+.+ +.  +..-..
T Consensus         7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~--~~~~~~   83 (277)
T 3hs3_A            7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA-FT--IPPNFH   83 (277)
T ss_dssp             -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC-CC--CCTTCC
T ss_pred             cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc-hH--HHHHHh
Confidence            4567899999999887788899999999999999984444444445443    2222  3799999887 32  233344


Q ss_pred             CCCcccC
Q 020984          171 FLAPVIT  177 (319)
Q Consensus       171 f~kPvlT  177 (319)
                      ...|+|+
T Consensus        84 ~~iPvV~   90 (277)
T 3hs3_A           84 LNTPLVM   90 (277)
T ss_dssp             CSSCEEE
T ss_pred             CCCCEEE
Confidence            4567653

>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*

Probab=80.01  E-value=6.3  Score=35.25  Aligned_cols=80  Identities=13%  Similarity=0.135  Sum_probs=56.2

Q ss_pred             ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEc---------CCCCHHhhc--------CCCCCCEEEEecC
Q 020984           98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM---------GKPNPAKLA--------NFPECDVFINVSC  160 (319)
Q Consensus        98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~v---------g~in~~KLa--------Nf~eID~fV~iaC  160 (319)
                      ..+++||||- +    ....+-+.+++.|+++|.++..+.-         ++++++.+.        .-+++|+. +++|
T Consensus       115 ~g~~rvgllt-p----y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adai-vL~C  188 (240)
T 3ixl_A          115 LGVRRVALAT-A----YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGI-LLSS  188 (240)
T ss_dssp             TTCSEEEEEE-S----SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEE-EEEC
T ss_pred             hCCCEEEEEe-C----ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEE-EEeC
Confidence            3679999983 4    3355567888999999999776542         344544332        34578985 5669


Q ss_pred             CCccccc-----ccCCCCcccCHHHHHH
Q 020984          161 AQTALLD-----SKEFLAPVITPFEAML  183 (319)
Q Consensus       161 Pr~sidd-----~~~f~kPvlTP~El~v  183 (319)
                      -++....     ..++.+||+++-++.+
T Consensus       189 T~l~~l~~i~~le~~lg~PVids~~a~~  216 (240)
T 3ixl_A          189 GGLLTLDAIPEVERRLGVPVVSSSPAGF  216 (240)
T ss_dssp             TTSCCTTHHHHHHHHHSSCEEEHHHHHH
T ss_pred             CCCchhhhHHHHHHHhCCCEEeHHHHHH
Confidence            9998754     4678899999987644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d1byka_	255	Trehalose repressor, C-terminal domain {Escherichi	92.5
d2fz5a1	137	Flavodoxin {Megasphaera elsdenii [TaxId: 907]}	88.98
d2nzug1	275	Glucose-resistance amylase regulator CcpA, C-termi	88.98
d1oboa_	169	Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 11	87.03
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	86.22
d1u11a_	159	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	83.65
d1czna_	169	Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI	83.24
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	81.12

>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Trehalose repressor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.50  E-value=0.25  Score=41.29  Aligned_cols=76  Identities=9%  Similarity=0.124  Sum_probs=56.4

Q ss_pred             CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcC----C--CCCCEEEEecCCCcccccccCCCC
Q 020984          100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLAN----F--PECDVFINVSCAQTALLDSKEFLA  173 (319)
Q Consensus       100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaN----f--~eID~fV~iaCPr~sidd~~~f~k  173 (319)
                      .|+||||+-++.-..+..+++.+.+.++++|+...++. ++-++++..+    +  ..+|.+|+.++.............
T Consensus         2 ~k~Igvi~p~~~~~~~~~~~~~i~~~~~~~Gy~~~~~~-s~~d~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   80 (255)
T d1byka_           2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMME-SQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQS   80 (255)
T ss_dssp             CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHhccccceeeccccchHHHHHHHcCC
Confidence            58999999999888888999999999999998876554 5667775432    2  269999997776544333344556


Q ss_pred             ccc
Q 020984          174 PVI  176 (319)
Q Consensus       174 Pvl  176 (319)
                      |++
T Consensus        81 p~v   83 (255)
T d1byka_          81 SLV   83 (255)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            654

>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Megasphaera elsdenii [TaxId: 907]

Probab=88.98  E-value=0.62  Score=35.56  Aligned_cols=55  Identities=16%  Similarity=0.229  Sum_probs=46.9

Q ss_pred             EEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCC
Q 020984          103 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ  162 (319)
Q Consensus       103 iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr  162 (319)
                      |+||.+|..+ +...+++.|.+.|++.|.++-++-+.+.+++.|.+.   |. |+++||-
T Consensus         2 V~IvY~S~tG-nTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~---d~-ii~g~pT   56 (137)
T d2fz5a1           2 VEIVYWSGTG-NTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASK---DV-ILLGCPA   56 (137)
T ss_dssp             EEEEECCSSS-HHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTC---SE-EEEECCC
T ss_pred             EEEEEECCCh-HHHHHHHHHHHHHHhcCCceEEeehhhHHHhhhhcc---ce-EEEEEec
Confidence            7899999864 677999999999999999999999999999998764   55 6677773

>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Glucose-resistance amylase regulator CcpA, C-terminal domain
species: Bacillus megaterium [TaxId: 1404]

Probab=88.98  E-value=0.25  Score=41.10  Aligned_cols=66  Identities=20%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCCCcc
Q 020984           98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTA  164 (319)
Q Consensus        98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCPr~s  164 (319)
                      |..++||||+.++.-..+..+++.+++.++++|.+..++.... +++.    +.++  ..+|.+|+.+|....
T Consensus         1 kkt~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~e~~~i~~~~~~~vdgii~~~~~~~~   72 (275)
T d2nzug1           1 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQ-NQDKELHLLNNMLGKQVDGIIFMSGNVTE   72 (275)
T ss_dssp             CCCSEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHTTCCSEEEECCSCCCH
T ss_pred             CcCCEEEEECCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHHHHhcCCceeeccccchhh
Confidence            4578999999999877788999999999999999886655543 4432    1121  269999999988653

>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]

Probab=87.03  E-value=0.25  Score=39.87  Aligned_cols=56  Identities=13%  Similarity=0.271  Sum_probs=42.0

Q ss_pred             CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCC
Q 020984          100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ  162 (319)
Q Consensus       100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr  162 (319)
                      ||+|+|+.||.. -+...++++|.+.|...+  +-++-+.+.++..|.++   | .|+++||-
T Consensus         1 ~KKI~I~YgS~t-GnTe~vA~~I~~~l~~~~--~~v~~i~~~~~~~l~~~---d-~~i~g~sT   56 (169)
T d1oboa_           1 AKKIGLFYGTQT-GKTESVAEIIRDEFGNDV--VTLHDVSQAEVTDLNDY---Q-YLIIGCPT   56 (169)
T ss_dssp             CCSEEEEECCSS-SHHHHHHHHHHHHHCTTT--EEEEETTTCCGGGGGGC---S-EEEEEEEE
T ss_pred             CCEEEEEEECCC-chHHHHHHHHHHHhccCC--ceEEEcccCChhhhccC---C-EEEEEEec
Confidence            689999999975 345688888888886655  44667888888887765   4 46777774

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.22  E-value=0.56  Score=38.81  Aligned_cols=61  Identities=15%  Similarity=0.103  Sum_probs=46.4

Q ss_pred             CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecCCC
Q 020984          101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ  162 (319)
Q Consensus       101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaCPr  162 (319)
                      |+||+|+.++.-..+.++++.+++.++++|....++.. .-++++.    ..+  ..+|.+|++.+..
T Consensus         1 ktIg~i~~~~~~pf~~~~~~gi~~~~~~~gy~~~~~~~-~~d~~~~~~~~~~l~~~~vdgiIi~~~~~   67 (282)
T d1dbqa_           1 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA-WNNLEKQRAYLSMMAQKRVDGLLVMCSEY   67 (282)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHhcCCCEEeeecccc
Confidence            68999999999888999999999999999998765544 4444432    222  2799998876543

>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Acetobacter aceti [TaxId: 435]

Probab=83.65  E-value=1.3  Score=36.06  Aligned_cols=57  Identities=21%  Similarity=0.429  Sum_probs=45.5

Q ss_pred             CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCC------CCCCEEEEec
Q 020984          100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVS  159 (319)
Q Consensus       100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf------~eID~fV~ia  159 (319)
                      +..|+||+|+   +.-+.+++...+.|++.|.++-+.+++ .=+|++|..|      .++++||.+|
T Consensus         2 ~P~V~IimGS---~SD~~v~~~a~~~L~~~gI~~e~~v~SAHR~p~~l~~~~~~~e~~~~~viIa~A   65 (159)
T d1u11a_           2 APVVGIIMGS---QSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGA   65 (159)
T ss_dssp             CCSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred             cCeEEEEeCC---HhhHHHHHHHHHHHHHhCCceEEEEehHhhChHHHHHHHHHHHhcCCeEEEEEe
Confidence            5679999998   667889999999999999998777765 5688888755      2567776665

>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Synechococcus elongatus PCC 7942 [TaxId: 1140]

Probab=83.24  E-value=0.71  Score=37.35  Aligned_cols=55  Identities=13%  Similarity=0.253  Sum_probs=43.8

Q ss_pred             EEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCC
Q 020984          102 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ  162 (319)
Q Consensus       102 ~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr  162 (319)
                      +|+|+.||-.| +...++++|.+.|++.|. +-++-|...++..|.++   | .|++.||=
T Consensus         2 KI~I~YgS~tG-nTe~vA~~ia~~l~~~~~-v~i~~~~~~~~~~l~~~---d-~li~g~sT   56 (169)
T d1czna_           2 KIGLFYGTQTG-VTQTIAESIQQEFGGESI-VDLNDIANADASDLNAY---D-YLIIGCPT   56 (169)
T ss_dssp             CEEEEECCSSS-HHHHHHHHHHHHHTSTTT-EEEEEGGGCCGGGGGGC---S-EEEEECCE
T ss_pred             cEEEEEECCCc-hHHHHHHHHHHHhhhCCC-eeEEecccccccccccc---C-eEEEEecC
Confidence            68999999864 467899999999988775 66777999999888776   3 47777873

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=81.12  E-value=0.85  Score=35.14  Aligned_cols=76  Identities=9%  Similarity=0.140  Sum_probs=56.0

Q ss_pred             CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc-CCCCCCEEEEecCCCcccccccCCCCcccCHH
Q 020984          101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQTALLDSKEFLAPVITPF  179 (319)
Q Consensus       101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa-Nf~eID~fV~iaCPr~sidd~~~f~kPvlTP~  179 (319)
                      .++-||..|.. -+...+++.|.+-|++.|.++-++-+.+.+++.+. .+.+.|++| ++||-..    .....++-..+
T Consensus         3 ~K~lIvY~S~~-GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii-~Gspt~~----g~~~~~~~~~l   76 (149)
T d1ycga1           3 AKAVIAYDTMW-LSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVL-VGSPTIN----NDILPVVSPLL   76 (149)
T ss_dssp             SEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEE-EECCCBT----TBCCGGGHHHH
T ss_pred             cEEEEEEECCC-cHHHHHHHHHHHHHHhcCCeeEEEEccccchHHHhhhhhhCCeEE-EEeeccc----CCCCHHHHHHH
Confidence            35778888875 45668999999999999999999999999988875 455788855 8999542    23444455445


Q ss_pred             HHH
Q 020984          180 EAM  182 (319)
Q Consensus       180 El~  182 (319)
                      +..
T Consensus        77 ~~l   79 (149)
T d1ycga1          77 DDL   79 (149)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443