Citrus Sinensis ID: 021042

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVGGVGRNGNYGNHGGWDSWDNDDFRSSNDMRRNQSVSDFRGGSGGMGGMPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPSQGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKLFLSEEDCFYWKKNPRG
cHHHHHHHHHHccccccccccccccccccEEEcccEEEEEcccccccccccEEEEEEccccccccHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccc
ccHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccHcHcEEEEccccc
MAATRRlrdlqsqpgnkicvdcaqknpqwasVSYGVFMCLecsgkhrglgvHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLsqygipketdivTKYNTNAASIYRDRIQAIaegrpwrdppvvketlnagksssrpplaqsasvggvgrngnygnhggwdswdnddfrssndmrrnqsvsdfrggsggmggmpasrsksteDIYTRAELEASaankegffsrkiaenearpeglppsqggkyvgfgstppptqrntnsqgdVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSklflseedcfywkknprg
maatrrlrdlqsqpgnkICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIaegrpwrdppVVKETlnagksssrpplaqsasvggVGRNGNYGNHGGWDSWDNDDFRSSNDMRRNQsvsdfrggsggmggmpasrskSTEDIYTRAELEasaankegffSRKIAenearpeglppsqGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTsklflseedcfywkknprg
MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVggvgrngnygnhggWDSWDNDDFRSSNDMRRNQSVSDFRggsggmggmPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPSQGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLvaasaaqsaatvvqaGTREFTSKLFLSEEDCFYWKKNPRG
****************KICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW****************************************************************************************************************************************************VSQGFGRISLVAASAAQSAATVVQAGTREFTSKLFLSEEDCFYWK*****
***TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRI***************************************************************************************************************************************************************QGFG********************************************
**********QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKET*****************VGGVGRNGNYGNHGGWDSWDNDDFRSSNDMRRNQSVSDFRG*****************DIYTRAELEASAANKEGFFSRKIAENEARPEGLPPSQGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLV************QAGTREFTSKLFLSEEDCFYWKKNPRG
MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGR****************************************************************************************YTRAELEASAANKEGFFSRKIAENEARPEGLPPSQGGKYVGFGST***********GDVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKLFLSEEDCFYWKKN***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVGGVGRNGNYGNHGGWDSWDNDDFRSSNDMRRNQSVSDFRGGSGGMGGMPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPSQGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKLFLSEEDCFYWKKNPRG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query318 2.2.26 [Sep-21-2011]
O80925 456 ADP-ribosylation factor G yes no 0.899 0.627 0.688 1e-118
Q9M354 459 Probable ADP-ribosylation no no 0.902 0.625 0.721 1e-113
P35197352 ADP-ribosylation factor G yes no 0.820 0.741 0.333 8e-36
Q8N6T3406 ADP-ribosylation factor G yes no 0.591 0.463 0.38 1e-33
Q9EPJ9414 ADP-ribosylation factor G no no 0.525 0.403 0.392 3e-33
Q62848415 ADP-ribosylation factor G yes no 0.550 0.421 0.382 1e-32
Q17R07 517 ADP-ribosylation factor G no no 0.339 0.208 0.509 8e-30
Q9D8S3 523 ADP-ribosylation factor G no no 0.349 0.212 0.5 1e-29
Q4KLN7 525 ADP-ribosylation factor G no no 0.349 0.211 0.5 1e-29
Q4R4C9 516 ADP-ribosylation factor G N/A no 0.339 0.209 0.490 4e-29
>sp|O80925|AGD7_ARATH ADP-ribosylation factor GTPase-activating protein AGD7 OS=Arabidopsis thaliana GN=AGD7 PE=1 SV=1 Back     alignment and function desciption
 Score =  423 bits (1088), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/305 (68%), Positives = 245/305 (80%), Gaps = 19/305 (6%)

Query: 1   MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60
           MAA RRLR LQSQP NK+CVDC+QKNPQWAS+SYG+FMCLECSGKHRGLGVHISFVRSVT
Sbjct: 1   MAAARRLRTLQSQPENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVT 60

Query: 61  MDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
           MDSWSEIQIKKM+AGGNERLN FL+QYGI KETDI++KYN+NAAS+YRDRIQA+AEGR W
Sbjct: 61  MDSWSEIQIKKMDAGGNERLNNFLAQYGISKETDIISKYNSNAASVYRDRIQALAEGRQW 120

Query: 121 RDPPVVKETLNAGKSSSRPPLAQSASVGGVGRNGNYGNHGGWDSWDNDDFRSSNDMRRNQ 180
           RDPP+VKE++  G  + +PPL+Q                  WD+WDNDD   S DMRRNQ
Sbjct: 121 RDPPIVKESVGGGLMNKKPPLSQGGGRDSGNGG--------WDNWDNDDSFRSTDMRRNQ 172

Query: 181 SVSDFRGGSGGMGGMPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPS 240
           S  DFR  S G  G PA +SKS+EDIY+R++LEASAANKE FF++++AENE++PEGLPPS
Sbjct: 173 SAGDFR--SSGGRGAPA-KSKSSEDIYSRSQLEASAANKESFFAKRMAENESKPEGLPPS 229

Query: 241 QGGKYVGFGSTPPPTQRNTNSQ---GDVLSAVSQGFGRISLVAASAAQSAATVVQAGTRE 297
           QGGKYVGFGS+P P  R +N Q   GDV S +S+GFGR+SLVAA    SAA VVQ GT E
Sbjct: 230 QGGKYVGFGSSPGPAPR-SNQQSGGGDVFSVMSEGFGRLSLVAA----SAANVVQTGTME 284

Query: 298 FTSKL 302
           FTSK+
Sbjct: 285 FTSKV 289
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Involved in protein trafficking by controlling ARF1 activity; may participate in COPI vesicle formation at the Golgi complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M354|AGD6_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1 Back     alignment and function description
>sp|P35197|GCS1_YEAST ADP-ribosylation factor GTPase-activating protein GCS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8N6T3|ARFG1_HUMAN ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9EPJ9|ARFG1_MOUSE ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2 Back     alignment and function description
>sp|Q62848|ARFG1_RAT ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1 Back     alignment and function description
>sp|Q17R07|ARFG3_BOVIN ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2 Back     alignment and function description
>sp|Q4KLN7|ARFG3_RAT ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus norvegicus GN=Arfgap3 PE=2 SV=1 Back     alignment and function description
>sp|Q4R4C9|ARFG3_MACFA ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query318
224138766 472 predicted protein [Populus trichocarpa] 0.937 0.631 0.739 1e-125
225440296 465 PREDICTED: probable ADP-ribosylation fac 0.930 0.636 0.771 1e-123
255573655 457 arf gtpase-activating protein, putative 0.915 0.636 0.774 1e-122
449520305 471 PREDICTED: probable ADP-ribosylation fac 0.915 0.617 0.765 1e-119
224090669 471 predicted protein [Populus trichocarpa] 0.937 0.632 0.736 1e-119
297827265 456 hypothetical protein ARALYDRAFT_482750 [ 0.899 0.627 0.698 1e-117
356548138 481 PREDICTED: ADP-ribosylation factor GTPas 0.883 0.584 0.717 1e-116
356537311 479 PREDICTED: ADP-ribosylation factor GTPas 0.877 0.582 0.721 1e-116
15224315 456 ADP-ribosylation factor GTPase-activatin 0.899 0.627 0.688 1e-116
449439984 457 PREDICTED: LOW QUALITY PROTEIN: ADP-ribo 0.889 0.619 0.745 1e-114
>gi|224138766|ref|XP_002322896.1| predicted protein [Populus trichocarpa] gi|222867526|gb|EEF04657.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/311 (73%), Positives = 271/311 (87%), Gaps = 13/311 (4%)

Query: 1   MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60
           MAA+RRLR+LQSQP NKICVDC+QKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT
Sbjct: 1   MAASRRLRELQSQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60

Query: 61  MDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
           MDSWSEIQIK+ME+GGN++LN FL+QYGIPKETDIV KY+TNAASIYRDRIQ++AEGR W
Sbjct: 61  MDSWSEIQIKRMESGGNDKLNAFLAQYGIPKETDIVAKYSTNAASIYRDRIQSLAEGRSW 120

Query: 121 RDPPVVKETLNAGKSSSRPPLAQS--ASVGGVGRNGNYGNHGGWDSWDNDD-FRSS-NDM 176
           RDPPVVKET+ + K   +PPLAQS        GR+GN+GN+GGWD+WDNDD F+ S +++
Sbjct: 121 RDPPVVKETIGSKK---KPPLAQSGGGGGAACGRDGNFGNNGGWDNWDNDDSFKYSLSEV 177

Query: 177 RRNQSVSDFRG-----GSGGMGGMPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENE 231
           RRNQSVSDFRG     G+ GMG +P  +S+STED+YT+++LEASAANKE FF+R++AENE
Sbjct: 178 RRNQSVSDFRGGDTGAGNDGMGRVPV-KSRSTEDMYTKSQLEASAANKESFFARRMAENE 236

Query: 232 ARPEGLPPSQGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLVAASAAQSAATVV 291
            RP+G+PPS GGKYVGFGS+P PTQ +  SQ DVLS VSQGFGR+S+VAASAAQSAA VV
Sbjct: 237 VRPDGIPPSHGGKYVGFGSSPSPTQSDNKSQQDVLSVVSQGFGRLSMVAASAAQSAANVV 296

Query: 292 QAGTREFTSKL 302
           QAGT+E TSK+
Sbjct: 297 QAGTKELTSKV 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225440296|ref|XP_002262606.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573655|ref|XP_002527750.1| arf gtpase-activating protein, putative [Ricinus communis] gi|223532891|gb|EEF34663.1| arf gtpase-activating protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449520305|ref|XP_004167174.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224090669|ref|XP_002309050.1| predicted protein [Populus trichocarpa] gi|222855026|gb|EEE92573.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297827265|ref|XP_002881515.1| hypothetical protein ARALYDRAFT_482750 [Arabidopsis lyrata subsp. lyrata] gi|297327354|gb|EFH57774.1| hypothetical protein ARALYDRAFT_482750 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356548138|ref|XP_003542460.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD7-like [Glycine max] Back     alignment and taxonomy information
>gi|356537311|ref|XP_003537172.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD7-like [Glycine max] Back     alignment and taxonomy information
>gi|15224315|ref|NP_181291.1| ADP-ribosylation factor GTPase-activating protein AGD7 [Arabidopsis thaliana] gi|79324596|ref|NP_001031503.1| ADP-ribosylation factor GTPase-activating protein AGD7 [Arabidopsis thaliana] gi|75220012|sp|O80925.1|AGD7_ARATH RecName: Full=ADP-ribosylation factor GTPase-activating protein AGD7; Short=ARF GAP AGD7; AltName: Full=Protein ARF-GAP DOMAIN 7; Short=AtAGD7; AltName: Full=Protein PDE1 SUPPRESSOR 1 gi|16930689|gb|AAL32010.1|AF436828_1 At2g37550/F13M22.5 [Arabidopsis thaliana] gi|3236238|gb|AAC23626.1| putative ADP ribosylation factor 1 GTPase activating protein [Arabidopsis thaliana] gi|4519792|dbj|BAA75744.1| Asp1 [Arabidopsis thaliana] gi|14334620|gb|AAK59488.1| putative ADP ribosylation factor 1 GTPase activating protein [Arabidopsis thaliana] gi|17104725|gb|AAL34251.1| putative ADP ribosylation factor 1 GTPase activating protein [Arabidopsis thaliana] gi|21655301|gb|AAM65362.1| At2g37550/F13M22.5 [Arabidopsis thaliana] gi|330254320|gb|AEC09414.1| ADP-ribosylation factor GTPase-activating protein AGD7 [Arabidopsis thaliana] gi|330254321|gb|AEC09415.1| ADP-ribosylation factor GTPase-activating protein AGD7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449439984|ref|XP_004137765.1| PREDICTED: LOW QUALITY PROTEIN: ADP-ribosylation factor GTPase-activating protein AGD7-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query318
TAIR|locus:2084360 459 AGD6 "AT3G53710" [Arabidopsis 0.902 0.625 0.665 1.3e-102
TAIR|locus:2040691 456 AGD7 "AT2G37550" [Arabidopsis 0.902 0.629 0.644 1.6e-102
FB|FBgn0020655 468 ArfGAP1 "ADP-ribosylation fact 0.367 0.25 0.521 6e-46
UNIPROTKB|E5RHC5261 ARFGAP1 "ADP-ribosylation fact 0.556 0.678 0.392 3.6e-40
UNIPROTKB|Q8N6T3406 ARFGAP1 "ADP-ribosylation fact 0.556 0.435 0.392 3.6e-40
UNIPROTKB|Q08DK2405 ARFGAP3 "Uncharacterized prote 0.550 0.432 0.398 5.1e-39
UNIPROTKB|F1N8K3419 ARFGAP1 "Uncharacterized prote 0.528 0.400 0.410 3.5e-38
UNIPROTKB|E2RHR0417 ARFGAP1 "Uncharacterized prote 0.528 0.402 0.4 3.5e-38
SGD|S000002385352 GCS1 "ADP-ribosylation factor 0.440 0.397 0.408 3.5e-38
UNIPROTKB|Q3S4A4 425 Arfgap1 "ADP-ribosylation fact 0.540 0.404 0.381 1.9e-37
TAIR|locus:2084360 AGD6 "AT3G53710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 201/302 (66%), Positives = 227/302 (75%)

Query:     1 MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60
             MAATR+LR LQSQP NK+CVDCAQKNPQWASVSYG+FMCLECSGKHRGLGVHISFVRSVT
Sbjct:     1 MAATRQLRTLQSQPENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVT 60

Query:    61 MDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
             MDSWS IQIKKMEAGGNERLN F +QYGI KETDI++KYN+NAAS+YRDRIQA+AEGRPW
Sbjct:    61 MDSWSAIQIKKMEAGGNERLNKFFAQYGIAKETDIISKYNSNAASVYRDRIQALAEGRPW 120

Query:   121 RDPPVVKETLNAGKSSSRPPLAQSASVXXXXXXXXXXXXXXWDSWDNDDFRSSNDMRRNQ 180
              DPPVVKE      ++ +PPLAQ                  WDSWDNDD   S DMRRNQ
Sbjct:   121 NDPPVVKE------ANKKPPLAQGG-----YGNNNNNNNGGWDSWDNDDSYKS-DMRRNQ 168

Query:   181 SVSDFRXXXXXXXXXPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPS 240
             S +DFR            +SKS+EDIYTR++LEASAA KE FF+R++AENE++PEGLPPS
Sbjct:   169 SANDFRASGNREGAHV--KSKSSEDIYTRSQLEASAAGKESFFARRMAENESKPEGLPPS 226

Query:   241 QGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLXXXXXXXXXXXXXXXGTREFTS 300
             QGGKYVGFGS+  P  RN N Q DV S VSQGFGR+SL               GT+EFTS
Sbjct:   227 QGGKYVGFGSSSAPPPRN-NQQDDVFSVVSQGFGRLSLVAASAAQSAASVVQTGTKEFTS 285

Query:   301 KL 302
             K+
Sbjct:   286 KV 287
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISS;IDA
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2040691 AGD7 "AT2G37550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0020655 ArfGAP1 "ADP-ribosylation factor GTPase activating protein 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E5RHC5 ARFGAP1 "ADP-ribosylation factor GTPase-activating protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N6T3 ARFGAP1 "ADP-ribosylation factor GTPase-activating protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DK2 ARFGAP3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8K3 ARFGAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHR0 ARFGAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
SGD|S000002385 GCS1 "ADP-ribosylation factor GTPase activating protein (ARF GAP)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q3S4A4 Arfgap1 "ADP-ribosylation factor GTPase activating protein 1 heart isoform" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80925AGD7_ARATHNo assigned EC number0.68850.89930.6271yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 3e-48
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 6e-43
COG5347319 COG5347, COG5347, GTPase-activating protein that r 8e-39
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 8e-29
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 8e-07
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 1e-06
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information 
 Score =  157 bits (399), Expect = 3e-48
 Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 4/110 (3%)

Query: 5   RRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSW 64
           R LR+L+  PGNK+C DC   NP WAS++ G+F+C+ CSG HR LGVHIS VRS+T+D W
Sbjct: 2   RLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKW 61

Query: 65  SEIQIKKMEAGGNERLNTFLSQYGIPKE----TDIVTKYNTNAASIYRDR 110
           +  Q++ M+AGGN+R N F      P +    +    K  +   + Y ++
Sbjct: 62  TPEQLEFMKAGGNKRANEFWEANLPPPKPPPSSSDREKRESFIRAKYVEK 111

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 318
KOG0704 386 consensus ADP-ribosylation factor GTPase activator 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 100.0
KOG0706 454 consensus Predicted GTPase-activating protein [Sig 100.0
PLN03114395 ADP-ribosylation factor GTPase-activating protein 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 99.96
PLN03131 705 hypothetical protein; Provisional 99.96
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.85
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.79
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.65
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.5
KOG0702 524 consensus Predicted GTPase-activating protein [Sig 99.46
KOG0521785 consensus Putative GTPase activating proteins (GAP 90.85
PRK00085247 recO DNA repair protein RecO; Reviewed 84.39
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-74  Score=552.09  Aligned_cols=240  Identities=57%  Similarity=0.930  Sum_probs=202.0

Q ss_pred             HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 021042            3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT   82 (318)
Q Consensus         3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~   82 (318)
                      +|+.|++|+...+|++||||+++|||||||+|||||||+|+|+||+||||||||||||||+|++.||++|++|||.++++
T Consensus         6 trr~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kMeaGGN~~~~e   85 (386)
T KOG0704|consen    6 TRRVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKMEAGGNERFRE   85 (386)
T ss_pred             HHHHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHHHhccchhHHH
Confidence            67777777777799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCC-ChhhhccchHHHHHHHHHHHHHcCCCCCCCcchhhhhccCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 021042           83 FLSQYGIPKET-DIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVGGVGRNGNYGNHGG  161 (318)
Q Consensus        83 ~~e~~~~~~~~-~i~~KY~s~aa~~yr~~L~a~~egr~w~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (318)
                      ||+.+++-++. +|++||++++|++||++|++++|||+|.+||.++|..++  ..++|.      . .            
T Consensus        86 FL~s~~~~~e~~~i~eKYns~aAa~yRdki~~laegr~w~d~~~~k~~~p~--~syt~a------~-~------------  144 (386)
T KOG0704|consen   86 FLSSQGIYKETWPIREKYNSRAAALYRDKIAALAEGREWNDPPYLKEDNPA--QSYTSA------A-Q------------  144 (386)
T ss_pred             HHhhCccccccccHHHhhccHHHHHHHHHHHHHhcCCcccccccccccCcc--cccccC------C-C------------
Confidence            99999866654 999999999999999999999999999999999887531  122220      0 0            


Q ss_pred             CCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHhhhhhhhhhHHhhhhhcCCCCCCCCC
Q 021042          162 WDSWDNDDFRSSNDMRRNQSVSDFRGGSGGMGGMPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPSQ  241 (318)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~s~~~~y~~~q~~~~~~~~e~yFa~~~~~Na~rp~~lpPSQ  241 (318)
                                                          ..+.+...+|+..|.+++++.+|.||++++.+|++|||+|||||
T Consensus       145 ------------------------------------~~~~ss~~~~~~sq~~~~~~~ke~~fa~~~~~n~srpd~lppsQ  188 (386)
T KOG0704|consen  145 ------------------------------------LGSKSSETIYTISQLSNSAAGKESYFAKRLSENQSRPDGLPPSQ  188 (386)
T ss_pred             ------------------------------------cCCCcCCcccccccchhhhcchhHHHHHhcccccCCCCCCCccc
Confidence                                                00011112344455667788999999999999999999999999


Q ss_pred             CCcccccCCCCCCCCCCcccchhhHHHHhhhhhhhHhHHHHHHHHhhhhcchhHHHHHhhhhcC
Q 021042          242 GGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKLFLS  305 (318)
Q Consensus       242 GGkY~GFG~tp~p~~~~~~~~~d~~~~ls~Gw~~fs~~a~~~~~~~~~v~~~g~~~~~~~~~~~  305 (318)
                      ||||+|||+|+.|||+.+ .++|+|+.|++||++||.+|++||.    |++.+++.+. ||+|+
T Consensus       189 ggkY~GFGst~~~ppqs~-~~~~~~s~ls~Gws~~s~~as~~a~----~~~~~~~~~s-kvkeg  246 (386)
T KOG0704|consen  189 GGKYQGFGSTNAPPPQSN-SQDDAMSVLSSGWSRLSTGASSAAS----VGQTATQKAS-KVKEG  246 (386)
T ss_pred             CCcccccCCCCCCCCccc-cccchhhhhccccccccchhhhhhh----hhhhhhhhhh-hhhhh
Confidence            999999999988887642 2338999999999999999998665    6666666665 77777

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00085 recO DNA repair protein RecO; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 9e-34
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 1e-33
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 1e-29
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 1e-27
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 2e-23
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 3e-19
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 1e-17
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 4e-16
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 5e-16
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 5e-16
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 5e-16
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 1e-14
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 2e-14
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 5e-12
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 1e-11
3lvq_E 497 The Crystal Structure Of Asap3 In Complex With Arf6 2e-11
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 1e-09
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 2e-09
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure 
Iteration: 1

 Score =  140 bits (353), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Query: 7   LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66
           L++++ Q  N +C +C   NPQW SV+YG+++CLECSG+HRGLGVH+SFVRSVTMD W +
Sbjct: 28  LKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKD 87
Query: 67  IQIKKMEAGGNERLNTFL-SQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
           I+++KM+AGGN +   FL SQ        +  KYN+ AA+++RD++ A+AEGR W
Sbjct: 88  IELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREW 142
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
3o47_A329 ADP-ribosylation factor GTPase-activating protein 7e-65
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 3e-59
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 3e-59
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 8e-54
2owa_A138 Arfgap-like finger domain containing protein; zinc 6e-53
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 7e-53
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 2e-42
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 3e-41
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 6e-41
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 1e-40
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 3e-40
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 7e-40
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 4e-39
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 4e-30
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
 Score =  206 bits (526), Expect = 7e-65
 Identities = 63/133 (47%), Positives = 91/133 (68%), Gaps = 4/133 (3%)

Query: 1   MAATRR---LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVR 57
           MA+ R    L++++ Q  N +C +C   NPQW SV+YG+++CLECSG+HRGLGVH+SFVR
Sbjct: 19  MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVR 78

Query: 58  SVTMDSWSEIQIKKMEAGGNERLNTFL-SQYGIPKETDIVTKYNTNAASIYRDRIQAIAE 116
           SVTMD W +I+++KM+AGGN +   FL SQ        +  KYN+ AA+++RD++ A+AE
Sbjct: 79  SVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAE 138

Query: 117 GRPWRDPPVVKET 129
           GR W       + 
Sbjct: 139 GREWSLESSPAQN 151
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query318
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 100.0
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 100.0
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
3o47_A329 ADP-ribosylation factor GTPase-activating protein 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.97
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.97
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.95
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.95
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.95
1gnf_A46 Transcription factor GATA-1; zinc finger, transcri 87.94
2vut_I43 AREA, nitrogen regulatory protein AREA; transcript 87.71
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 86.39
3dfx_A63 Trans-acting T-cell-specific transcription factor 84.49
4gat_A66 Nitrogen regulatory protein AREA; DNA binding prot 82.8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.9e-44  Score=309.00  Aligned_cols=120  Identities=48%  Similarity=0.994  Sum_probs=108.0

Q ss_pred             HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 021042            3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT   82 (318)
Q Consensus         3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~   82 (318)
                      ++++|++|++.|+|++|+||++++|+|||++||||||++|+||||.||+|||+||||+||.|+++||+.|+.+||.++|+
T Consensus        25 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~  104 (147)
T 3dwd_A           25 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFRE  104 (147)
T ss_dssp             HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcC-CCCCCChhhhccchHHHHHHHHHHHHHcCCCCCC
Q 021042           83 FLSQYG-IPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRD  122 (318)
Q Consensus        83 ~~e~~~-~~~~~~i~~KY~s~aa~~yr~~L~a~~egr~w~~  122 (318)
                      ||++++ +++..+|++||++++|.+||++|++++|||+|..
T Consensus       105 ~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~  145 (147)
T 3dwd_A          105 FLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL  145 (147)
T ss_dssp             HHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred             HHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence            999875 4567899999999999999999999999999985
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Back     alignment and structure
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 318
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 9e-37
d1u5ka2157 g.45.1.2 (A:81-237) Recombinational repair protein 0.003
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (316), Expect = 9e-37
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 5   RRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSW 64
             + ++Q   GN +C DC   +P W S + G+  C+ECSG HR LGVH S ++S+T+D  
Sbjct: 4   EIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVL 63

Query: 65  SEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDR-IQAIAEGRPW 120
              ++   +  GN   N  +        ++   K N  +  I R   I A    R +
Sbjct: 64  GTSELLLAKNIGNAGFNEIMECCL---PSEDPVKPNPGSDMIARKDYITAKYMERRY 117
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Length = 157 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query318
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 89.62
d1y0ja139 Erythroid transcription factor GATA-1 {Mouse (Mus 81.92
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-37  Score=257.97  Aligned_cols=117  Identities=31%  Similarity=0.555  Sum_probs=102.0

Q ss_pred             HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 021042            3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT   82 (318)
Q Consensus         3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~   82 (318)
                      ++++|++|++.|+|++|+|||+++|+|||++||||||++|||+||.||+|||+||||+||.|+++||++|+.+||..+|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCChhhhccchHHH-HHHHHHHHHHcCCCCCC
Q 021042           83 FLSQYGIPKETDIVTKYNTNAAS-IYRDRIQAIAEGRPWRD  122 (318)
Q Consensus        83 ~~e~~~~~~~~~i~~KY~s~aa~-~yr~~L~a~~egr~w~~  122 (318)
                      ||++.. +...  ..|+...... ..+++|+++|+.+.|..
T Consensus        82 ~~ea~~-~~~~--~~kp~~~~~~~~r~~fI~~KY~~k~f~~  119 (122)
T d1dcqa2          82 IMECCL-PSED--PVKPNPGSDMIARKDYITAKYMERRYAR  119 (122)
T ss_dssp             HHTTTC-CSSS--CCSCCTTCCHHHHHHHHHHHHTTCTTSC
T ss_pred             HHHhhC-Cccc--CcCCCCCccHHHHHHHHHHHHHhCcccc
Confidence            998653 2222  2244433332 34568999999999975
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure