Citrus Sinensis ID: 021047

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MEFDLENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEMDGCESILDTLSSSRTQFSVVDYKCTKSESQQITNSSITTTTMMPEKREIKRRKMNGFCSEGEFQLSRIQNC
cccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccHcHHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEccccccccccccccccccccccHHHHHHcccccccccEEEEEEccc
mefdlenpftsfeehqsdTLLDLFatesdhmpshnfvqCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRfisrqeipqgkpWVLRLLAVSCISLAAKmknthfplskfqgdqklifdAQTIHRMELLILDALNwrmrsitpfSFLCFFIslfepkdppltqaLKDRATDIIFRAHSEikllefrpSVIAASAVLLSsyelfplqfpsfktsilssdyvnkedlsKCYDTVQEMVEMDGCESILDTLSssrtqfsvvdykctksesqqitnssittttmmpekREIKRRkmngfcsegeFQLSRIQNC
MEFDLENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRqeipqgkpwVLRLLAVSCISLAAKMKNthfplskfqgdQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSeikllefrPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEMDGCESILDTLSSSRTQFSVVdykctksesqqitnssittttmmpekrEIKRRKMngfcsegefqlsriqnc
MEFDLENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPsviaasavllssYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEMDGCESILDTLSSSRTQFSVVDYKCTKsesqqitnssittttMMPEKREIKRRKMNGFCSEGEFQLSRIQNC
*******************LLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEMDGC********************************************************************
*EFDLENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMV*************************************************************************
*************EHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEMDGCESILDTLSSSRTQFSVVDYKCTKSESQQITNSSITTTTMMPEKREIKRRKMNGFCSEGEFQLSRIQNC
*****ENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEMDG**S**DT*SSSRTQFSVVDYKCTKS*********************I****MNGFCSEGEFQLSRIQNC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEFDLENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEMDGCESILDTLSSSRTQFSVVDYKCTKSESQQITNSSITTTTMMPEKREIKRRKMNGFCSEGEFQLSRIQNC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query318 2.2.26 [Sep-21-2011]
Q9ZR04302 Putative cyclin-D6-1 OS=A yes no 0.905 0.953 0.424 2e-56
Q69S43320 Cyclin-D6-1 OS=Oryza sati yes no 0.889 0.884 0.331 7e-38
Q0J233308 Cyclin-D2-1 OS=Oryza sati no no 0.691 0.714 0.361 2e-35
Q8LGA1308 Cyclin-D4-1 OS=Arabidopsi no no 0.745 0.769 0.357 3e-35
P42751339 Cyclin-D1-1 OS=Arabidopsi no no 0.867 0.814 0.321 4e-35
Q6YXH8356 Cyclin-D4-1 OS=Oryza sati no no 0.660 0.589 0.364 8e-34
Q4KYM5383 Cyclin-D4-2 OS=Oryza sati no no 0.694 0.577 0.337 1e-32
Q8LHA8356 Cyclin-D2-2 OS=Oryza sati no no 0.858 0.766 0.335 2e-32
Q0WQN9298 Cyclin-D4-2 OS=Arabidopsi no no 0.751 0.802 0.34 1e-31
Q8H339354 Cyclin-D1-2 OS=Oryza sati no no 0.704 0.632 0.355 2e-31
>sp|Q9ZR04|CCD61_ARATH Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=3 SV=1 Back     alignment and function desciption
 Score =  219 bits (557), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/313 (42%), Positives = 192/313 (61%), Gaps = 25/313 (7%)

Query: 1   MEFDLENPFTSFEEHQS---DTLLD-----LFATESDHMPSHNFVQCLKITDFYVSLRQE 52
           MEF LE+P +    H +   DT  +     LF  E  HMPS ++   LK + F +S R +
Sbjct: 1   MEFHLEHPLSHSSLHNNFNDDTDYETLPHSLFLVEFQHMPSSHYFHSLKSSAFLLSNRNQ 60

Query: 53  TVSLILQIQFACNFE-PFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKN 111
            +S I   Q++  F+ P ++YLAV YLDRF+S +++PQ KPW+L+L+++SC+SL+AKM+ 
Sbjct: 61  AISSI--TQYSRKFDDPSLTYLAVNYLDRFLSSEDMPQSKPWILKLISLSCVSLSAKMRK 118

Query: 112 THFPLSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPK--DPP 169
               +S    + +  FDAQ I RME +IL AL WRMRS+TPFSFL FFISLFE K  DP 
Sbjct: 119 PDMSVSDLPVEGEF-FDAQMIERMENVILGALKWRMRSVTPFSFLAFFISLFELKEEDPL 177

Query: 170 L-TQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDY 228
           L   +LK + +D+ F    +I  LEF+PSVIA +A+L +S+EL PLQFP F   I    Y
Sbjct: 178 LLKHSLKSQTSDLTFSLQHDISFLEFKPSVIAGAALLFASFELCPLQFPCFSNRINQCTY 237

Query: 229 VNKEDLSKCYDTVQEMVEMDGCESILDTLSSSRTQFSVVDYKCTKSESQQITNSSIT-TT 287
           VNK++L +CY  +QE   + G     +   S+ T  +V+D + +  ES +    SIT T 
Sbjct: 238 VNKDELMECYKAIQERDIIVG-----ENEGSTETAVNVLDQQFSSCESDK----SITITA 288

Query: 288 TMMPEKREIKRRK 300
           +  P++R+   R+
Sbjct: 289 SSSPKRRKTSTRR 301

Arabidopsis thaliana (taxid: 3702)
>sp|Q69S43|CCD61_ORYSJ Cyclin-D6-1 OS=Oryza sativa subsp. japonica GN=CYCD6-1 PE=2 SV=1 Back     alignment and function description
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2 Back     alignment and function description
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2 Back     alignment and function description
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3 Back     alignment and function description
>sp|Q6YXH8|CCD41_ORYSJ Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2 Back     alignment and function description
>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2 Back     alignment and function description
>sp|Q8LHA8|CCD22_ORYSJ Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q0WQN9|CCD42_ARATH Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2 Back     alignment and function description
>sp|Q8H339|CCD12_ORYSJ Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query318
255567453305 cyclin d, putative [Ricinus communis] gi 0.946 0.986 0.694 1e-119
224078830305 predicted protein [Populus trichocarpa] 0.955 0.996 0.649 1e-110
224114109309 predicted protein [Populus trichocarpa] 0.965 0.993 0.627 1e-106
224146705324 predicted protein [Populus trichocarpa] 0.971 0.953 0.544 2e-89
359359238324 D6-type cyclin [Populus x canadensis] 0.971 0.953 0.544 5e-89
147778292 435 hypothetical protein VITISV_034614 [Viti 0.952 0.696 0.511 2e-84
359495729327 PREDICTED: putative cyclin-D6-1-like, pa 0.899 0.874 0.557 3e-84
297745660407 unnamed protein product [Vitis vinifera] 0.899 0.702 0.557 4e-84
224116258257 predicted protein [Populus trichocarpa] 0.701 0.867 0.688 2e-82
356515222329 PREDICTED: putative cyclin-D6-1-like [Gl 0.977 0.945 0.495 1e-79
>gi|255567453|ref|XP_002524706.1| cyclin d, putative [Ricinus communis] gi|223536067|gb|EEF37725.1| cyclin d, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/304 (69%), Positives = 253/304 (83%), Gaps = 3/304 (0%)

Query: 1   MEFDLENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQI 60
           MEFDLENP TS  EHQSDT+ DLFA+ESDHMPS +F++CLK  DFY S RQE +SLILQ 
Sbjct: 1   MEFDLENPLTSSNEHQSDTIPDLFASESDHMPSRDFLKCLKTCDFYSSFRQEAISLILQA 60

Query: 61  QFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQ 120
           Q+ CNFEPF +YLA+ Y+DR +SRQEIPQGKPW+LRLLA+SC+SLAAKMK+THFPLS  Q
Sbjct: 61  QYTCNFEPFFAYLAINYMDRCVSRQEIPQGKPWLLRLLAISCLSLAAKMKDTHFPLSNLQ 120

Query: 121 GDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATD 180
            ++   FD QT+ RMELLIL ALNWRMRSITPFSFL FFISLFE KDPPLTQALKDRAT+
Sbjct: 121 REESFNFDMQTVSRMELLILGALNWRMRSITPFSFLHFFISLFELKDPPLTQALKDRATE 180

Query: 181 IIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDT 240
           IIF+AH EIKLLEFRPSVIAASA+L++S+ELFPLQ+PSFK SI S + VNKE+L +C + 
Sbjct: 181 IIFKAHHEIKLLEFRPSVIAASALLVASHELFPLQYPSFKCSIFSCECVNKENLLRCLNA 240

Query: 241 VQEMVEMDGCESILDTLSSSRTQFSVVDYKCTKSESQQITNSSITTTTMMPEKREIKRRK 300
           +Q+MVEM   ES+LDT+SS+RT  S++D  CTKSES+    +SITT T + +K+EIKR K
Sbjct: 241 LQQMVEMVWYESMLDTVSSTRTPLSILDRHCTKSESE---TTSITTATALTDKKEIKRYK 297

Query: 301 MNGF 304
             G+
Sbjct: 298 TIGY 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224078830|ref|XP_002305644.1| predicted protein [Populus trichocarpa] gi|159025731|emb|CAN88866.1| D6-type cyclin [Populus trichocarpa] gi|222848608|gb|EEE86155.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224114109|ref|XP_002316670.1| predicted protein [Populus trichocarpa] gi|159025733|emb|CAN88867.1| D6-type cyclin [Populus trichocarpa] gi|222859735|gb|EEE97282.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224146705|ref|XP_002326106.1| predicted protein [Populus trichocarpa] gi|159025735|emb|CAN88868.1| D6-type cyclin [Populus trichocarpa] gi|222862981|gb|EEF00488.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359359238|gb|AEV41137.1| D6-type cyclin [Populus x canadensis] Back     alignment and taxonomy information
>gi|147778292|emb|CAN65140.1| hypothetical protein VITISV_034614 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495729|ref|XP_002267937.2| PREDICTED: putative cyclin-D6-1-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745660|emb|CBI40871.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224116258|ref|XP_002317253.1| predicted protein [Populus trichocarpa] gi|159025729|emb|CAN88865.1| D6-type cyclin [Populus trichocarpa] gi|222860318|gb|EEE97865.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356515222|ref|XP_003526300.1| PREDICTED: putative cyclin-D6-1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query318
TAIR|locus:2125522302 CYCD6;1 "AT4G03270" [Arabidops 0.754 0.794 0.439 2.5e-49
TAIR|locus:2020663339 CYCD1;1 "CYCLIN D1;1" [Arabido 0.710 0.666 0.341 5.4e-31
TAIR|locus:2142504298 CYCD4;2 "AT5G10440" [Arabidops 0.767 0.818 0.321 2.1e-29
TAIR|locus:2124331376 CYCD3;1 "CYCLIN D3;1" [Arabido 0.723 0.611 0.315 7.3e-27
TAIR|locus:2157172367 CYCD3;2 "AT5G67260" [Arabidops 0.830 0.719 0.290 4.2e-24
TAIR|locus:2083128361 CYCD3;3 "AT3G50070" [Arabidops 0.619 0.545 0.3 4.8e-23
UNIPROTKB|Q10QA2345 CYCD5-3 "Cyclin-D5-3" [Oryza s 0.468 0.431 0.346 2.2e-18
TAIR|locus:2120081323 CYCD5;1 "AT4G37630" [Arabidops 0.446 0.439 0.321 1.4e-16
ZFIN|ZDB-GENE-980526-176291 ccnd1 "cyclin D1" [Danio rerio 0.770 0.841 0.229 1e-10
MGI|MGI:88313295 Ccnd1 "cyclin D1" [Mus musculu 0.726 0.783 0.259 1.5e-10
TAIR|locus:2125522 CYCD6;1 "AT4G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 112/255 (43%), Positives = 156/255 (61%)

Query:     1 MEFDLENPFTSFEEHQS---DTLLD-----LFATESDHMPSHNFVQCLKITDFYVSLRQE 52
             MEF LE+P +    H +   DT  +     LF  E  HMPS ++   LK + F +S R +
Sbjct:     1 MEFHLEHPLSHSSLHNNFNDDTDYETLPHSLFLVEFQHMPSSHYFHSLKSSAFLLSNRNQ 60

Query:    53 TVSLILQIQFACNFE-PFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKN 111
              +S I Q  ++  F+ P ++YLAV YLDRF+S +++PQ KPW+L+L+++SC+SL+AKM+ 
Sbjct:    61 AISSITQ--YSRKFDDPSLTYLAVNYLDRFLSSEDMPQSKPWILKLISLSCVSLSAKMRK 118

Query:   112 THFPLSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPK--DPP 169
                 +S    + +  FDAQ I RME +IL AL WRMRS+TPFSFL FFISLFE K  DP 
Sbjct:   119 PDMSVSDLPVEGEF-FDAQMIERMENVILGALKWRMRSVTPFSFLAFFISLFELKEEDPL 177

Query:   170 LTQ-ALKDRATDIIFRAHSEIKLLEFRPXXXXXXXXXXXXYELFPLQFPSFKTSILSSDY 228
             L + +LK + +D+ F    +I  LEF+P            +EL PLQFP F   I    Y
Sbjct:   178 LLKHSLKSQTSDLTFSLQHDISFLEFKPSVIAGAALLFASFELCPLQFPCFSNRINQCTY 237

Query:   229 VNKEDLSKCYDTVQE 243
             VNK++L +CY  +QE
Sbjct:   238 VNKDELMECYKAIQE 252
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0010440 "stomatal lineage progression" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA
TAIR|locus:2020663 CYCD1;1 "CYCLIN D1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142504 CYCD4;2 "AT5G10440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124331 CYCD3;1 "CYCLIN D3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157172 CYCD3;2 "AT5G67260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083128 CYCD3;3 "AT3G50070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q10QA2 CYCD5-3 "Cyclin-D5-3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2120081 CYCD5;1 "AT4G37630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-980526-176 ccnd1 "cyclin D1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:88313 Ccnd1 "cyclin D1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZR04CCD61_ARATHNo assigned EC number0.42490.90560.9536yesno
Q69S43CCD61_ORYSJNo assigned EC number0.33110.88990.8843yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 1e-17
cd0004388 cd00043, CYCLIN, Cyclin box fold 5e-09
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 8e-09
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 4e-08
cd0004388 cd00043, CYCLIN, Cyclin box fold 0.002
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 0.002
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score = 77.2 bits (191), Expect = 1e-17
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 23  LFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFI 82
           L   E +  P  ++    +  D    +R   +  ++++       P   YLAV YLDRF+
Sbjct: 6   LRELEEEDRPPPDY--LDQQPDINPKMRAILIDWLVEVHEEFKLLPETLYLAVNYLDRFL 63

Query: 83  SRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILD 141
           S+Q         L+L+ V+C+ +AAK +  + P +  F       +  + I RMELLIL 
Sbjct: 64  SKQ---PVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMELLILS 120

Query: 142 ALNWRMR 148
            LNW + 
Sbjct: 121 TLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 318
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 100.0
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.93
TIGR00569305 ccl1 cyclin ccl1. University). 99.92
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.86
KOG0835367 consensus Cyclin L [General function prediction on 99.8
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.76
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.73
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.59
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.58
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.53
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.51
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.49
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.03
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.72
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.4
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.36
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.35
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 98.08
KOG1598 521 consensus Transcription initiation factor TFIIIB, 97.77
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.99
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.15
KOG1674218 consensus Cyclin [General function prediction only 95.34
PRK00423310 tfb transcription initiation factor IIB; Reviewed 95.12
PF09080106 K-cyclin_vir_C: K cyclin, C terminal; InterPro: IP 92.74
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 86.41
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 84.73
KOG1597308 consensus Transcription initiation factor TFIIB [T 83.99
PF09241106 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: 81.22
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=7e-52  Score=381.25  Aligned_cols=223  Identities=40%  Similarity=0.725  Sum_probs=205.8

Q ss_pred             chHHHHHHHHHHhhhhCCCCchhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchh
Q 021047           15 HQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWV   94 (318)
Q Consensus        15 Y~~di~~~L~~~E~~~~p~~~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~   94 (318)
                      +.+|.+.+|+++|+++.|..+|..+++. .+++.+|.++++||++||+++++.++|++||||||||||+.+.+++.+||+
T Consensus        44 ~~e~~i~~ll~kEe~~~p~~~~~~~~~~-~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~  122 (335)
T KOG0656|consen   44 WDERVLANLLEKEEQHNPSLDYFLCVQK-LILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWM  122 (335)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhhhccc-ccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHH
Confidence            6689999999999999999997777765 589999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccCCCC-hhhhhhhc-ccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhCCCCchhHH
Q 021047           95 LRLLAVSCISLAAKMKNTHFP-LSKFQGDQ-KLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQ  172 (318)
Q Consensus        95 lqL~avacL~iAaK~eE~~~p-l~dl~~~~-~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~~~~~~~~  172 (318)
                      +||+|+|||+||||+||+.+| +.|++++. .+.|.+++|++||+.||++|+|+|+.+||++|+++|+.+++..+... +
T Consensus       123 lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~~-~  201 (335)
T KOG0656|consen  123 LQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHNK-H  201 (335)
T ss_pred             HHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHHHHHHHhhccccccCCCchHHHHHHHHHcCcccchH-H
Confidence            999999999999999999999 58998877 79999999999999999999999999999999999999999874443 4


Q ss_pred             HHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhcCCCcccHHHHHH
Q 021047          173 ALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYD  239 (318)
Q Consensus       173 ~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C~~  239 (318)
                      .+..++..++..+..|.+|++|+||+||+|++..+...+.+.........+..+.+++++.+..|++
T Consensus       202 ~~~~~~s~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~~l~~~~~~~~~~~~~~l~~e~~~~~~~  268 (335)
T KOG0656|consen  202 LFLKHASLFLLSVITDIKFLEYPPSVIAAAAILSVSASVDGLDFREYENNLLSLLSLSKEKVNRCYD  268 (335)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhHHhhhcchh
Confidence            6778899999999999999999999999999999988887766666667888889999999999999

>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF09080 K-cyclin_vir_C: K cyclin, C terminal; InterPro: IPR015164 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-06
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 3e-06
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 2e-04
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 6e-04
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 6e-04
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 7e-04
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 7e-04
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure 
Iteration: 1

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 93/183 (50%), Gaps = 14/183 (7%)
Query: 19  TLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYL 78
            L  +   E    PS ++ +C++  +   S+R+   + +L++      E  +  LA+ YL
Sbjct: 27  VLRAMLKAEETCAPSVSYFKCVQ-KEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYL 85
Query: 79  DRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTIH----- 133
           DRF+S + + + +   L+LL  +C+ +A+KMK T  PL+    ++  I+   +I      
Sbjct: 86  DRFLSLEPVKKSR---LQLLGATCMFVASKMKET-IPLT---AEKLCIYTDNSIRPEELL 138
Query: 134 RMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLE 193
           +MELL+++ L W + ++TP  F+  F+S   P+     Q ++  A   +    +++K + 
Sbjct: 139 QMELLLVNKLKWNLAAMTPHDFIEHFLSKM-PEAEENKQIIRKHAQTFVALCATDVKFIS 197
Query: 194 FRP 196
             P
Sbjct: 198 NPP 200
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-31
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 2e-29
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 8e-24
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 9e-20
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 3e-19
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 8e-18
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-17
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-17
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 3e-15
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 4e-14
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 3e-10
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 3e-08
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 2e-07
2ivx_A257 Cyclin-T2; transcription regulation, cell division 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
 Score =  119 bits (299), Expect = 1e-31
 Identities = 44/257 (17%), Positives = 98/257 (38%), Gaps = 9/257 (3%)

Query: 23  LFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFI 82
           L   E  ++P  ++ QC++  +    +R+     +L++      E  +  LA+ YLDR++
Sbjct: 45  LLRLEERYVPRASYFQCVQ-REIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYL 103

Query: 83  SRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILD 141
           S     + +   L+LL   C+ LA+K++ T    + K           + +   E+L+L 
Sbjct: 104 SCVPTRKAQ---LQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLG 160

Query: 142 ALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAA 201
            L W + ++    FL F +              K  A   +    ++     + PS+IA 
Sbjct: 161 KLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKK-HAQTFLALCATDYTFAMYPPSMIAT 219

Query: 202 SAVLLSSYELFPLQFPSFKTSILSSDY--VNKEDLSKCYDTVQEMVEMDGCESILDTLSS 259
            ++  +   L        + + L +       + L  C + ++  +     E+   + S 
Sbjct: 220 GSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREAAQTSSSP 279

Query: 260 SRTQ-FSVVDYKCTKSE 275
           +            +++ 
Sbjct: 280 APKAPRGSSSQGPSQTS 296
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query318
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.95
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.9
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.73
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.38
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.36
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.92
1c9b_A207 General transcription factor IIB; protein-DNA comp 95.62
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 93.41
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 91.65
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 86.92
2ivx_A257 Cyclin-T2; transcription regulation, cell division 85.99
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 85.26
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 84.1
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 80.97
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 80.55
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.2e-49  Score=370.13  Aligned_cols=238  Identities=18%  Similarity=0.294  Sum_probs=207.7

Q ss_pred             CCCCCCchhchHHHHHHHHHHhhhhCCCCchhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCC
Q 021047            6 ENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQ   85 (318)
Q Consensus         6 ~~~l~~~~eY~~di~~~L~~~E~~~~p~~~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~   85 (318)
                      .||..+   |.+||+.+|+++|.++.|.++|++..|. ++++.+|.++|+||++|+..|+++++|+++||+|||||+++.
T Consensus        31 ~dp~l~---~~~~i~~~l~~~E~~~~p~~~y~~~~q~-~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~  106 (306)
T 3g33_B           31 PDPRLL---GDQRVLQSLLRLEERYVPRASYFQCVQR-EIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCV  106 (306)
T ss_dssp             ---------CHHHHHHHHHHHGGGGSCSSCCTTTSTT-TCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHC
T ss_pred             CCCccc---chHHHHHHHHHHHHHhCCCcHHHhhcCc-cCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcC
Confidence            356554   8999999999999999999999987664 699999999999999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHHHHHHHHhhhhhccCCCC-hhhhhhhcccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhC
Q 021047           86 EIPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFE  164 (318)
Q Consensus        86 ~v~~~~~~~lqL~avacL~iAaK~eE~~~p-l~dl~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~  164 (318)
                      .+.+.+   +||+|+|||+||+|+||..+| +.+|+...++.|++++|++||+.||++|+|+|++|||++||.+|+..++
T Consensus       107 ~v~~~~---lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~  183 (306)
T 3g33_B          107 PTRKAQ---LQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLS  183 (306)
T ss_dssp             CCCGGG---HHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSS
T ss_pred             CCcHHH---HHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcC
Confidence            886555   999999999999999999987 7899877777899999999999999999999999999999999999987


Q ss_pred             CCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCCC--CCcchHHHhhhhcCCCcccHHHHHHHHH
Q 021047          165 PKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPL--QFPSFKTSILSSDYVNKEDLSKCYDTVQ  242 (318)
Q Consensus       165 ~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~--~~~~~~~~l~~~~~~~~~~l~~C~~~l~  242 (318)
                      ..... ...+...+.++++.++.++.|+.|+||+||+|||++|+..++..  +...|.+.|..++||++++|.+|++.|.
T Consensus       184 ~~~~~-~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~  262 (306)
T 3g33_B          184 LPRDR-QALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIE  262 (306)
T ss_dssp             CCTTT-HHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CChhH-HHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            65433 33566788899999999999999999999999999999988742  2245788999999999999999999999


Q ss_pred             HHHHhcCcc
Q 021047          243 EMVEMDGCE  251 (318)
Q Consensus       243 ~~~~~~~~~  251 (318)
                      +++......
T Consensus       263 ~l~~~~l~~  271 (306)
T 3g33_B          263 AALRESLRE  271 (306)
T ss_dssp             HHHHTC---
T ss_pred             HHHHHHHHH
Confidence            999865543
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 318
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 2e-18
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 2e-17
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 6e-17
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 1e-16
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 8e-14
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 1e-12
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 5e-12
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 6e-11
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 23  LFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFI 82
           L   E    P   +++     D   S+R   V  ++++      +    +LAV Y+DRF+
Sbjct: 6   LREMEVKCKPKVGYMKKQ--PDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 63

Query: 83  SRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILD 141
           S   +       L+L+  + + LA+K +  + P +++F       +  + + RME L+L 
Sbjct: 64  SSMSVL---RGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLK 120

Query: 142 ALNWRMRS 149
            L + + +
Sbjct: 121 VLTFDLAA 128
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query318
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 100.0
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.97
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.95
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.85
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.84
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.8
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.59
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.59
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.38
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.2
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.12
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.01
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.98
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.92
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.73
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.58
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.44
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.32
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.98
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 94.94
d1f5qb2106 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 94.15
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 89.12
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

Probab=100.00  E-value=5.4e-34  Score=231.45  Aligned_cols=130  Identities=17%  Similarity=0.298  Sum_probs=122.5

Q ss_pred             chHHHHHHHHHHhhhhCCCCchhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchh
Q 021047           15 HQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWV   94 (318)
Q Consensus        15 Y~~di~~~L~~~E~~~~p~~~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~   94 (318)
                      +.++|+.+|++.|.++.|+++|+..+|. ++++.+|..+|+||.+|+..++++++|+|+||+|||||+++..+++++   
T Consensus         2 ~~~~i~~~l~~~E~~~~p~~~y~~~~q~-~it~~~R~~lidWl~~v~~~~~l~~et~~lAv~llDrfls~~~v~~~~---   77 (132)
T d1g3nc1           2 CEDRIFYNILEIEPRFLTSDSVFGTFQQ-SLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEH---   77 (132)
T ss_dssp             HHHHHHHHHHHHGGGGCCCGGGHHHHTS-SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHH---
T ss_pred             chHHHHHHHHHHHHHHCCChHHHHhcCc-cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCcccCcHHH---
Confidence            4678999999999999999999998876 699999999999999999999999999999999999999999997776   


Q ss_pred             HHHHHHHHHHhhhhhccCCCC-hhhhhhhcccccCHHHHHHHHHHHHHHcCcccc
Q 021047           95 LRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILDALNWRMR  148 (318)
Q Consensus        95 lqL~avacL~iAaK~eE~~~p-l~dl~~~~~~~~~~~~i~~mE~~IL~~L~w~l~  148 (318)
                      +||+|+|||+||+|+||..+| +.+++...++.|+.++|.+||+.||++|+|++.
T Consensus        78 lqLia~tcl~iAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~w~l~  132 (132)
T d1g3nc1          78 FQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTE  132 (132)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCC
Confidence            999999999999999999887 789987777899999999999999999999974
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure