Citrus Sinensis ID: 021052

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32

MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKFP

ccHHHHHHHHccccccEEEEccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHcccccEEEEEEccccccccccccccEEEEEEEcccccHHccccccccHHHHHHHHHHHHHHHHHccccHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccc

ccHHHHHHHHccccccccEcEEccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccEEEEEEccccccccccccccEEEEEEccEEccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHcccccccccccccccccccc

MKGETVVIITKFQLFNHINSLFfnlgsglssstafVCSSTVALMAAFGVEVPKKEIAQLTCECEQfigtqsggmDQAISIMAKSGfaelidfnpirttdvqlpaggTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAckngssdpvFAVKEFlrkepytaldiEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHafkdtvssnlseeDKLKKLGdlmndshhscsvlyecsitssARVHEILISMVTiarkpghtpppttpppiqsktkfp

MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAasnynnrvVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFackngssdpVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHafkdtvssnlseEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIarkpghtpppttpppiqsktkfp

MKGETVVIITKFQLFNHInslffnlgsglsssTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHtpppttpppIQSKTKFP

****TVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKIT*****************************AAHVYS********************************HHSCSVLYECSITSSARVHEILISMVTIA**********************

MKGETVVIITKFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMK**********LSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQS*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		318	2.2.26 [Sep-21-2011]
Q9SEE5		496	Galactokinase OS=Arabidop	yes	no	0.795	0.510	0.770	1e-108
Q54DN6		501	Galactokinase OS=Dictyost	yes	no	0.786	0.499	0.355	3e-41
Q5XIG6		458	N-acetylgalactosamine kin	yes	no	0.751	0.521	0.380	1e-38
Q5R6J8		458	N-acetylgalactosamine kin	yes	no	0.751	0.521	0.388	2e-37
Q01415		458	N-acetylgalactosamine kin	yes	no	0.751	0.521	0.388	3e-37
Q68FH4		458	N-acetylgalactosamine kin	yes	no	0.754	0.524	0.367	4e-37
P04385		528	Galactokinase OS=Saccharo	yes	no	0.798	0.481	0.337	1e-24
O42821		504	Galactokinase OS=Candida	N/A	no	0.789	0.498	0.339	2e-23
P09608		503	Galactokinase OS=Kluyvero	yes	no	0.792	0.500	0.317	4e-22
P13045		520	Protein GAL3 OS=Saccharom	no	no	0.798	0.488	0.300	4e-21

>sp\|Q9SEE5\|GALK1_ARATH Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2	Back alignment and function desciption

 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/253 (77%), Positives = 225/253 (88%)

Query: 26  GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
           GSGLSSS AFVCS+T+A+MA FG    KKE+AQLTCECE+ IGTQSGGMDQAISIMAK+G
Sbjct: 161 GSGLSSSAAFVCSATIAIMAVFGHNFEKKELAQLTCECERHIGTQSGGMDQAISIMAKTG 220

Query: 86  FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
           FAELIDFNP+R TDV+LP GG+FV+AHSLAES KA+TAA NYNNRVVECRL +I+L +KL
Sbjct: 221 FAELIDFNPVRATDVKLPDGGSFVIAHSLAESQKAVTAAKNYNNRVVECRLASIILGVKL 280

Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLT 205
           GM+P+EAISKVKTLSDVEGLCV+FA   GSSDP+ AVKE+L++EPYTA +IEKI EEKL 
Sbjct: 281 GMEPKEAISKVKTLSDVEGLCVSFAGDRGSSDPLLAVKEYLKEEPYTAEEIEKILEEKLP 340

Query: 206 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN 265
           SI  N  +SL VLNAA  +KLHQRAAHVYSEA+RVH FKDTV+SNLS+E+KLKKLGDLMN
Sbjct: 341 SIVNNDPTSLAVLNAATHFKLHQRAAHVYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMN 400

Query: 266 DSHHSCSVLYECS 278
           +SH+SCSVLYECS
Sbjct: 401 ESHYSCSVLYECS 413

Sugar-1-kinase with a very high substrate specificity for the alpha-anomeric configuration of D-galacose (D-Gal). Converts also efficiently 2-deoxy-D-Gal to 2-deoxy-D-al-1-phosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 6

>sp\|Q54DN6\|GALK_DICDI Galactokinase OS=Dictyostelium discoideum GN=galK PE=3 SV=1	Back alignment and function description

>sp\|Q5XIG6\|GALK2_RAT N-acetylgalactosamine kinase OS=Rattus norvegicus GN=Galk2 PE=2 SV=1	Back alignment and function description

>sp\|Q5R6J8\|GALK2_PONAB N-acetylgalactosamine kinase OS=Pongo abelii GN=GALK2 PE=2 SV=1	Back alignment and function description

>sp\|Q01415\|GALK2_HUMAN N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1	Back alignment and function description

>sp\|Q68FH4\|GALK2_MOUSE N-acetylgalactosamine kinase OS=Mus musculus GN=Galk2 PE=1 SV=1	Back alignment and function description

>sp\|P04385\|GAL1_YEAST Galactokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL1 PE=1 SV=4	Back alignment and function description

>sp\|O42821\|GAL1_CANPA Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3 SV=1	Back alignment and function description

>sp\|P09608\|GAL1_KLULA Galactokinase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAL1 PE=2 SV=2	Back alignment and function description

>sp\|P13045\|GAL3_YEAST Protein GAL3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL3 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		318
255556438		499	galactokinase, putative [Ricinus communi	0.795	0.507	0.806	1e-117
224108774		496	predicted protein [Populus trichocarpa]	0.795	0.510	0.814	1e-116
356565073		497	PREDICTED: galactokinase-like [Glycine m	0.842	0.539	0.749	1e-114
224101523		496	predicted protein [Populus trichocarpa]	0.795	0.510	0.802	1e-114
356521747		497	PREDICTED: galactokinase-like [Glycine m	0.842	0.539	0.745	1e-114
84468320		496	putative galactose kinase [Trifolium pra	0.795	0.510	0.798	1e-114
209978716		500	galactokinase [Cucumis melo]	0.795	0.506	0.782	1e-113
357479039		497	Galactokinase [Medicago truncatula] gi\|3	0.795	0.509	0.782	1e-112
449466203		426	PREDICTED: galactokinase-like [Cucumis s	0.795	0.593	0.778	1e-112
449516960		499	PREDICTED: galactokinase-like [Cucumis s	0.795	0.507	0.778	1e-112

>gi\|255556438\|ref\|XP_002519253.1\| galactokinase, putative [Ricinus communis] gi\|223541568\|gb\|EEF43117.1\| galactokinase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/253 (80%), Positives = 231/253 (91%)

Query: 26  GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
           GSGLSSS AFVCS+T+A+MAAF V  PKKEIAQLTCECE+ IGTQSGGMDQAIS+MA++G
Sbjct: 164 GSGLSSSAAFVCSATIAIMAAFNVNFPKKEIAQLTCECERHIGTQSGGMDQAISVMAQTG 223

Query: 86  FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
           FAELIDFNPIR TDVQLPAGGTFV+AHSLAES KA+TAA+NYNNRVVECRL AI+L +KL
Sbjct: 224 FAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECRLAAILLGVKL 283

Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLT 205
           GMKPQ+AI KVKTLSDVEGLCV+FA    S+DP  AVKEFL++EPY+A +IEKITEE L+
Sbjct: 284 GMKPQDAILKVKTLSDVEGLCVSFAGTRDSADPAVAVKEFLKEEPYSAEEIEKITEEDLS 343

Query: 206 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN 265
           SIF+NS +SLDVL AAK +KLHQRAAHVYSEAKRVHAFKDTVSS LS+EDKLKKLGDLMN
Sbjct: 344 SIFSNSPTSLDVLKAAKHFKLHQRAAHVYSEAKRVHAFKDTVSSKLSDEDKLKKLGDLMN 403

Query: 266 DSHHSCSVLYECS 278
           +SH+SCS+LYECS
Sbjct: 404 ESHYSCSILYECS 416

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224108774\|ref\|XP_002314964.1\| predicted protein [Populus trichocarpa] gi\|222864004\|gb\|EEF01135.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356565073\|ref\|XP_003550769.1\| PREDICTED: galactokinase-like [Glycine max]	Back alignment and taxonomy information

>gi\|224101523\|ref\|XP_002312315.1\| predicted protein [Populus trichocarpa] gi\|222852135\|gb\|EEE89682.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356521747\|ref\|XP_003529513.1\| PREDICTED: galactokinase-like [Glycine max]	Back alignment and taxonomy information

>gi\|84468320\|dbj\|BAE71243.1\| putative galactose kinase [Trifolium pratense]	Back alignment and taxonomy information

>gi\|209978716\|gb\|ACJ04703.1\| galactokinase [Cucumis melo]	Back alignment and taxonomy information

>gi\|357479039\|ref\|XP_003609805.1\| Galactokinase [Medicago truncatula] gi\|355510860\|gb\|AES92002.1\| Galactokinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449466203\|ref\|XP_004150816.1\| PREDICTED: galactokinase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449516960\|ref\|XP_004165514.1\| PREDICTED: galactokinase-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		318
TAIR\|locus:2084344		496	GALK [Arabidopsis thaliana (ta	0.770	0.493	0.767	6.4e-99
RGD\|1308691		458	Galk2 "galactokinase 2" [Rattu	0.707	0.491	0.392	1e-36
DICTYBASE\|DDB_G0292112		501	galK "galactokinase" [Dictyost	0.738	0.469	0.372	2.1e-36
UNIPROTKB\|E1C902		398	GALK2 "Uncharacterized protein	0.783	0.625	0.380	3.5e-36
UNIPROTKB\|F1P1D1		461	GALK2 "Uncharacterized protein	0.783	0.540	0.380	3.5e-36
UNIPROTKB\|F1MFK7		447	GALK2 "Uncharacterized protein	0.713	0.507	0.384	3.5e-36
UNIPROTKB\|F1SQG6		458	GALK2 "Uncharacterized protein	0.707	0.491	0.392	7.2e-36
UNIPROTKB\|E2RDA6		458	GALK2 "Uncharacterized protein	0.707	0.491	0.396	9.2e-36
MGI\|MGI:1917226		458	Galk2 "galactokinase 2" [Mus m	0.713	0.495	0.372	1.5e-35
UNIPROTKB\|B7ZAX5		434	GALK2 "cDNA, FLJ79339, highly	0.707	0.518	0.400	1.9e-35

TAIR\|locus:2084344 GALK [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 188/245 (76%), Positives = 218/245 (88%)

Query:    34 AFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93
             AFVCS+T+A+MA FG    KKE+AQLTCECE+ IGTQSGGMDQAISIMAK+GFAELIDFN
Sbjct:   169 AFVCSATIAIMAVFGHNFEKKELAQLTCECERHIGTQSGGMDQAISIMAKTGFAELIDFN 228

Query:    94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153
             P+R TDV+LP GG+FV+AHSLAES KA+TAA NYNNRVVECRL +I+L +KLGM+P+EAI
Sbjct:   229 PVRATDVKLPDGGSFVIAHSLAESQKAVTAAKNYNNRVVECRLASIILGVKLGMEPKEAI 288

Query:   154 SKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSS 213
             SKVKTLSDVEGLCV+FA   GSSDP+ AVKE+L++EPYTA +IEKI EEKL SI  N  +
Sbjct:   289 SKVKTLSDVEGLCVSFAGDRGSSDPLLAVKEYLKEEPYTAEEIEKILEEKLPSIVNNDPT 348

Query:   214 SLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSV 273
             SL VLNAA  +KLHQRAAHVYSEA+RVH FKDTV+SNLS+E+KLKKLGDLMN+SH+SCSV
Sbjct:   349 SLAVLNAATHFKLHQRAAHVYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMNESHYSCSV 408

Query:   274 LYECS 278
             LYECS
Sbjct:   409 LYECS 413

GO:0004335 "galactokinase activity" evidence=IEA;IGI;ISS;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006012 "galactose metabolic process" evidence=IEA;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0046835 "carbohydrate phosphorylation" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

RGD\|1308691 Galk2 "galactokinase 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0292112 galK "galactokinase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C902 GALK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P1D1 GALK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MFK7 GALK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SQG6 GALK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RDA6 GALK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1917226 Galk2 "galactokinase 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|B7ZAX5 GALK2 "cDNA, FLJ79339, highly similar to N-acetylgalactosamine kinase (EC 2.7.1.157)" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SEE5	GALK1_ARATH	2, ., 7, ., 1, ., 6	0.7707	0.7955	0.5100	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.6	0.914
3rd Layer	2.7.1	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		318
PLN02521		497	PLN02521, PLN02521, galactokinase	1e-168
COG0153		390	COG0153, GalK, Galactokinase [Carbohydrate transpo	5e-30
TIGR00131		386	TIGR00131, gal_kin, galactokinase	2e-25
PRK05322		387	PRK05322, PRK05322, galactokinase; Provisional	2e-12
PRK03817		351	PRK03817, PRK03817, galactokinase; Provisional	1e-11
pfam00288		67	pfam00288, GHMP_kinases_N, GHMP kinases N terminal	7e-11
PRK05101		382	PRK05101, PRK05101, galactokinase; Provisional	1e-08
PRK00555		363	PRK00555, PRK00555, galactokinase; Provisional	1e-08
PLN02865		423	PLN02865, PLN02865, galactokinase	4e-07
TIGR00549		274	TIGR00549, mevalon_kin, mevalonate kinase	6e-05
COG1577		307	COG1577, ERG12, Mevalonate kinase [Lipid metabolis	8e-05
PRK03926		302	PRK03926, PRK03926, mevalonate kinase; Provisional	0.004

>gnl\|CDD\|215285 PLN02521, PLN02521, galactokinase	Back alignment and domain information

 Score =  475 bits (1224), Expect = e-168
 Identities = 192/253 (75%), Positives = 220/253 (86%)

Query: 26  GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSG 85
           GSGLSSS A VCS+ +A+MAA G+   KKE+AQ TC+CE+ IGTQSGGMDQAISIMA+ G
Sbjct: 161 GSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQG 220

Query: 86  FAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145
            A+LIDFNP+R TDVQLPAGGTFV+A+SLAES KA+TAA+NYNNRVVECRL AIVLA+KL
Sbjct: 221 VAKLIDFNPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKL 280

Query: 146 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLT 205
           GM  +EAISKVKTLSDVEGLCV+FA  +GSSDP  AVKE L + PYTA +IE+I  E LT
Sbjct: 281 GMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLT 340

Query: 206 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN 265
           SIF NS +SL VL AAK +KLHQRA HVYSEAKRVHAF+DTVSS+LSEE+KLKKLGDLMN
Sbjct: 341 SIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMN 400

Query: 266 DSHHSCSVLYECS 278
           +SH+SCSVLYECS
Sbjct: 401 ESHYSCSVLYECS 413

Length = 497

>gnl\|CDD\|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|232841 TIGR00131, gal_kin, galactokinase	Back alignment and domain information

>gnl\|CDD\|235407 PRK05322, PRK05322, galactokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|235163 PRK03817, PRK03817, galactokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain	Back alignment and domain information

>gnl\|CDD\|179937 PRK05101, PRK05101, galactokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179063 PRK00555, PRK00555, galactokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|215466 PLN02865, PLN02865, galactokinase	Back alignment and domain information

>gnl\|CDD\|233017 TIGR00549, mevalon_kin, mevalonate kinase	Back alignment and domain information

>gnl\|CDD\|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|179677 PRK03926, PRK03926, mevalonate kinase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		318
PLN02521		497	galactokinase	100.0
COG0153		390	GalK Galactokinase [Carbohydrate transport and met	100.0
PLN02865		423	galactokinase	100.0
PTZ00290		468	galactokinase; Provisional	100.0
PRK05322		387	galactokinase; Provisional	100.0
PRK05101		382	galactokinase; Provisional	100.0
TIGR00131		386	gal_kin galactokinase. The galactokinases found by	100.0
PRK00555		363	galactokinase; Provisional	100.0
KOG0631		489	consensus Galactokinase [Carbohydrate transport an	100.0
PRK03817		351	galactokinase; Provisional	100.0
COG1577		307	ERG12 Mevalonate kinase [Lipid metabolism]	100.0
TIGR00549		273	mevalon_kin mevalonate kinase. Paracoccus exhibits	100.0
PLN02677		387	mevalonate kinase	99.98
PTZ00298		328	mevalonate kinase; Provisional	99.97
TIGR01220		358	Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ	99.97
COG2605		333	Predicted kinase related to galactokinase and meva	99.96
PRK13412		974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	99.96
PRK03926		302	mevalonate kinase; Provisional	99.96
KOG1511		397	consensus Mevalonate kinase MVK/ERG12 [Lipid trans	99.94
PLN02451		370	homoserine kinase	99.87
COG0083		299	ThrB Homoserine kinase [Amino acid transport and m	99.81
TIGR01920		261	Shik_kin_archae shikimate kinase. This model repre	99.81
TIGR00191		302	thrB homoserine kinase. P.aeruginosa homoserine ki	99.8
PRK00128		286	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	99.77
PRK01212		301	homoserine kinase; Provisional	99.77
PRK03188		300	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.76
PRK01123		282	shikimate kinase; Provisional	99.74
TIGR01219		454	Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type,	99.72
PTZ00299		336	homoserine kinase; Provisional	99.69
PRK02534		312	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.68
TIGR00154		293	ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin	99.64
PRK14614		280	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.63
PRK14611		275	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.6
PRK14616		287	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.59
PF00288		67	GHMP_kinases_N: GHMP kinases N terminal domain; In	99.59
PRK14609		269	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.56
PRK14608		290	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.56
TIGR00144		324	beta_RFAP_syn beta-RFAP synthase. This protein fam	99.52
PRK14615		296	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.51
PRK14612		276	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.45
PRK14613		297	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.45
TIGR01240		305	mevDPdecarb diphosphomevalonate decarboxylase. Alt	99.21
PRK00343		271	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	99.17
PRK14610		283	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.07
PF08544		85	GHMP_kinases_C: GHMP kinases C terminal ; InterPro	99.03
COG1685		278	Archaeal shikimate kinase [Amino acid transport an	99.0
KOG4644		948	consensus L-fucose kinase [Carbohydrate transport	98.95
COG4542		293	PduX Protein involved in propanediol utilization,	98.84
COG1907		312	Predicted archaeal sugar kinases [General function	98.8
PRK00650		288	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.79
PRK05905		258	hypothetical protein; Provisional	98.78
COG1947		289	IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p	98.75
PRK04181		257	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.71
PLN02407		343	diphosphomevalonate decarboxylase	98.68
KOG1537		355	consensus Homoserine kinase [Amino acid transport	98.27
KOG2833		395	consensus Mevalonate pyrophosphate decarboxylase [	98.14
COG1829		283	Predicted archaeal kinase (sugar kinase superfamil	98.1
COG3407		329	MVD1 Mevalonate pyrophosphate decarboxylase [Lipid	97.98
COG3890		337	ERG8 Phosphomevalonate kinase [Lipid metabolism]	97.96
KOG4519		459	consensus Phosphomevalonate kinase [Lipid transpor	96.77

>PLN02521 galactokinase	Back alignment and domain information

Probab=100.00  E-value=1.3e-60  Score=475.54  Aligned_cols=298  Identities=66%  Similarity=0.940  Sum_probs=271.6

Q ss_pred             ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052           13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF   92 (318)
Q Consensus        13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~   92 (318)
                      .||++.|.|+||+|+|||||||++||++.|++.+++.++++++++++|+++|+++|.++|+|||+++++|++|+++++||
T Consensus       148 ~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~  227 (497)
T PLN02521        148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDF  227 (497)
T ss_pred             CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEec
Confidence            49999999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcc
Q 021052           93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK  172 (318)
Q Consensus        93 ~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~  172 (318)
                      ++++++++++|.++.|||++|+++++|+.+++++||.|+.||+.|+++|+++++++.+....++.+|||+++.+....+.
T Consensus       228 ~~l~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~  307 (497)
T PLN02521        228 NPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGS  307 (497)
T ss_pred             CCCceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhccc
Confidence            99999999999999999999999999999999999999999999999999887765433222477999997644334456


Q ss_pred             CCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021052          173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS  252 (318)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~d~  252 (318)
                      +...++.+.+++.+.+.+|+.++++++++..+++++++.++.+++++.++.|.+|+|++|+++|+.||.+|+++|+++++
T Consensus       308 ~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~  387 (497)
T PLN02521        308 HGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLS  387 (497)
T ss_pred             ccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCc
Confidence            67777889999999999999999999887677788877777888888899999999999999999999999999999876


Q ss_pred             chHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052          253 EEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF  317 (318)
Q Consensus       253 ~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~  317 (318)
                      ++++++.||+||++||+|||++|+||||+   +    |.|+++|++.|++||||||||||||+++
T Consensus       388 ~~~~~~~lg~lm~~sh~slr~~~~vS~~e---l----D~lv~~a~~~Ga~GaRltGaG~GG~~i~  445 (497)
T PLN02521        388 EEEKLKKLGDLMNESHYSCSVLYECSCPE---L----EELVKVCRDNGALGARLTGAGWGGCAVA  445 (497)
T ss_pred             cchHHHHHHHHHHHHHHHHhhccCCCcHH---H----HHHHHHHHhcCCcEEEECCCCCCeEEEE
Confidence            66679999999999999999999999999   9    9999999999999999999999999985

>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN02865 galactokinase	Back alignment and domain information

>PTZ00290 galactokinase; Provisional	Back alignment and domain information

>PRK05322 galactokinase; Provisional	Back alignment and domain information

>PRK05101 galactokinase; Provisional	Back alignment and domain information

>TIGR00131 gal_kin galactokinase	Back alignment and domain information

>PRK00555 galactokinase; Provisional	Back alignment and domain information

>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK03817 galactokinase; Provisional	Back alignment and domain information

>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]	Back alignment and domain information

>TIGR00549 mevalon_kin mevalonate kinase	Back alignment and domain information

>PLN02677 mevalonate kinase	Back alignment and domain information

>PTZ00298 mevalonate kinase; Provisional	Back alignment and domain information

>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch	Back alignment and domain information

>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]	Back alignment and domain information

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional	Back alignment and domain information

>PRK03926 mevalonate kinase; Provisional	Back alignment and domain information

>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]	Back alignment and domain information

>PLN02451 homoserine kinase	Back alignment and domain information

>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01920 Shik_kin_archae shikimate kinase	Back alignment and domain information

>TIGR00191 thrB homoserine kinase	Back alignment and domain information

>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK01212 homoserine kinase; Provisional	Back alignment and domain information

>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK01123 shikimate kinase; Provisional	Back alignment and domain information

>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch	Back alignment and domain information

>PTZ00299 homoserine kinase; Provisional	Back alignment and domain information

>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Back alignment and domain information

>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2	Back alignment and domain information

>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>TIGR00144 beta_RFAP_syn beta-RFAP synthase	Back alignment and domain information

>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase	Back alignment and domain information

>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2	Back alignment and domain information

>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>COG1907 Predicted archaeal sugar kinases [General function prediction only]	Back alignment and domain information

>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK05905 hypothetical protein; Provisional	Back alignment and domain information

>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]	Back alignment and domain information

>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PLN02407 diphosphomevalonate decarboxylase	Back alignment and domain information

>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]	Back alignment and domain information

>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]	Back alignment and domain information

>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]	Back alignment and domain information

>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]	Back alignment and domain information

>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		318
2a2d_A		478	X-Ray Structure Of Human N-Acetyl Galactosamine Kin		4e-38
2aj4_A		548	Crystal Structure Of Saccharomyces Cerevisiae Galac		7e-22
3v2u_C		520	Crystal Structure Of The Yeast Gal Regulon Complex		8e-21
3v5r_A		505	Crystal Structure Of The Unliganded Form Of Gal3p L		9e-21

>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase Complexed With Mn-Amppnp And N-Acetyl Glactosamine Length = 478

Back alignment and structure

Iteration: 1

Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 106/273 (38%), Positives = 153/273 (56%), Gaps = 34/273 (12%) Query: 34 AFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93 A VC + + + G + K E+A++ + E++IGT+ GGMDQ+IS +A+ G A+LI+F+ Sbjct: 169 ALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFS 228 Query: 94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 153 P+R TDV+LP+G FV+A+S E KA A S++N RV+ECRL A +LA ++ Sbjct: 229 PLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKYKSLQ----W 282 Query: 154 SKVKTLSDVEGLCVAFACKNGSS--DPVFAVKEFLRKEPYTALDIEKI----TEEKLTSI 207 KV L +V+ K G S + + ++ L EPY +I + EE T I Sbjct: 283 DKVLRLEEVQA-------KLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQI 335 Query: 208 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS 267 S ++ DVL +KL+QRA HVYSEA RV FK + E+ ++ LG+LMN S Sbjct: 336 L--SPNTQDVL----IFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQS 387 Query: 268 HHSCSVLYECSITSSARVHEILISMVTIARKPG 300 H SC +YECS L +V I RK G Sbjct: 388 HMSCRDMYECSCPE-------LDQLVDICRKFG 413

PyMOL of 2a2d

>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Galactokinase In Complex With Galactose And Mg:amppnp Length = 548

Back alignment and structure

>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The Repressor, Gal80p, And The Transducer, Gal3p, With Galactose And Atp Length = 520

Back alignment and structure

>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p Length = 505

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		318
2a2c_A		478	N-acetylgalactosamine kinase; galactokinase, , tra	7e-71
3v2u_C		520	Protein GAL3; rossmann fold, GHMP superfamily, tra	1e-54
2cz9_A		350	Probable galactokinase; structural genomics, NPPSF	3e-34
1pie_A		419	Galactokinase; galactose, galactosemia, transferas	2e-33
1wuu_A		399	Galactokinase; galactosemia, GHMP superfamily, tra	3e-30
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-16
2hfs_A		332	Mevalonate kinase, putative; GHMP kinase, trypanos	3e-12
2x7i_A		308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	4e-11
2x7i_A		308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	4e-04
2oi2_A		292	Mevalonate kinase; enzyme-inhibitor complex, trans	8e-11
1kkh_A		317	Mevalonate kinase; mixed beta sheet, phosphate-bin	7e-10
3k85_A		357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	7e-08
3k17_A		365	LIN0012 protein; protein structure initiative II(P	7e-07

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478	Back alignment and structure

 Score =  226 bits (577), Expect = 7e-71
 Identities = 103/276 (37%), Positives = 150/276 (54%), Gaps = 22/276 (7%)

Query: 25  LGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 84
             SGLSSS+A VC + +  +   G  + K E+A++  + E++IGT+ GGMDQ+IS +A+ 
Sbjct: 160 PSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEE 219

Query: 85  GFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144
           G A+LI+F+P+R TDV+LP+G  FV+A+S  E  KA  A S++N RV+ECRL A +LA  
Sbjct: 220 GTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKY 277

Query: 145 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKL 204
             ++      KV  L +V+             + +   ++ L  EPY   +I +     L
Sbjct: 278 KSLQWD----KVLRLEEVQAK-----LGISLEEMLLVTEDALHPEPYNPEEICRCLGISL 328

Query: 205 TSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLM 264
             +     S          +KL+QRA HVYSEA RV  FK       + E+ ++ LG+LM
Sbjct: 329 EELRTQILSPNTQD--VLIFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELM 384

Query: 265 NDSHHSCSVLYECSITSSARVHEILISMVTIARKPG 300
           N SH SC  +YECS          L  +V I RK G
Sbjct: 385 NQSHMSCRDMYECS-------CPELDQLVDICRKFG 413

PyMOL of 2a2c

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520	Back alignment and structure

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350	Back alignment and structure

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419	Back alignment and structure

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332	Back alignment and structure

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308	Back alignment and structure

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308	Back alignment and structure

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292	Back alignment and structure

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317	Back alignment and structure

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357	Back alignment and structure

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		318
3v2u_C		520	Protein GAL3; rossmann fold, GHMP superfamily, tra	100.0
2a2c_A		478	N-acetylgalactosamine kinase; galactokinase, , tra	100.0
1pie_A		419	Galactokinase; galactose, galactosemia, transferas	100.0
1wuu_A		399	Galactokinase; galactosemia, GHMP superfamily, tra	100.0
2cz9_A		350	Probable galactokinase; structural genomics, NPPSF	100.0
3k85_A		357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	100.0
3gon_A		335	Phosphomevalonate kinase; GHMP kinase superfamily,	100.0
1kvk_A		395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	99.98
3k17_A		365	LIN0012 protein; protein structure initiative II(P	99.97
2pg9_A		337	Phosphomevalonate kinase; GHMP kinase superfamily,	99.97
2x7i_A		308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	99.97
4hac_A		321	Mevalonate kinase; GHMP, ATP binding, phosphorylat	99.96
2hfs_A		332	Mevalonate kinase, putative; GHMP kinase, trypanos	99.96
2oi2_A		292	Mevalonate kinase; enzyme-inhibitor complex, trans	99.96
1kkh_A		317	Mevalonate kinase; mixed beta sheet, phosphate-bin	99.95
1h72_C		296	HK, homoserine kinase; transferase, threonine bios	99.93
3hul_A		298	HSK, HK, homoserine kinase; structural genomics, p	99.82
2gs8_A		317	Mevalonate pyrophosphate decarboxylase; streptococ	99.8
3pyf_A		306	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.76
2v8p_A		271	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.71
3qt5_A		332	Mevalonate diphosphate decarboxylase; GHMP kinase	99.68
1fi4_A		416	Mevalonate 5-diphosphate decarboxylase; mixed alph	99.64
1uek_A		275	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	99.62
3lto_A		323	Mevalonate diphosphate decarboxylase; protein stru	99.54
2ww4_A		283	4-diphosphocytidyl-2C-methyl-D-erythritol kinase;	99.53
2hke_A		380	Diphosphomevalonate decarboxylase, putative; meval	99.4
3f0n_A		414	Mevalonate pyrophosphate decarboxylase; cholestero	99.34

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*	Back alignment and structure

Probab=100.00  E-value=1.9e-59  Score=469.12  Aligned_cols=296  Identities=28%  Similarity=0.376  Sum_probs=258.7

Q ss_pred             cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeE
Q 021052           11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA   87 (318)
Q Consensus        11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~---g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~   87 (318)
                      ++.||++.|.|+||+|+||  |||++||++.|++.++   +.++++.+++++|+.+|+++|.|||+|||+++++|++|++
T Consensus       144 ~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~  221 (520)
T 3v2u_C          144 PLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHA  221 (520)
T ss_dssp             CCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBE
T ss_pred             CCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeE
Confidence            6789999999999999999  9999999999999998   7789999999999999999999999999999999999999


Q ss_pred             EEEeeCC-CeEEEeecCC----CcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCch----hhhhcccc
Q 021052           88 ELIDFNP-IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ----EAISKVKT  158 (318)
Q Consensus        88 ~~id~~~-~~~~~~~~~~----~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~----~~~~~~~~  158 (318)
                      +++||++ ++++++++|+    ++.|+|+||++.++||.+++++||.||.||+.|+++|+++++++..    .......+
T Consensus       222 l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~s  301 (520)
T 3v2u_C          222 LYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGN  301 (520)
T ss_dssp             EEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCC
T ss_pred             EEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCccccccccccccccc
Confidence            9999999 9999999987    8999999999999999999999999999999999999999876421    01112348


Q ss_pred             chhhhhhhhhh----hccC---------CCCChhHHHHHhhhc--CCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhH
Q 021052          159 LSDVEGLCVAF----ACKN---------GSSDPVFAVKEFLRK--EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ  223 (318)
Q Consensus       159 Lrd~~~~~~~~----~~~~---------~~~~~~~~~~~~~~~--~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  223 (318)
                      |||+.++++.-    ...|         ++.+|.+.+++.+++  ++||.+++++.+|.+.++|.++|++.+|+  ..+.
T Consensus       302 LRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~  379 (520)
T 3v2u_C          302 LRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQV  379 (520)
T ss_dssp             HHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESC
T ss_pred             HHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--cccc
Confidence            99997754320    0111         234566777888865  49999999999998778888889988885  5566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCC
Q 021052          224 YKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGH  301 (318)
Q Consensus       224 ~~~~~R~~hvi~E~~Rv~~~~~al~~~d--~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga  301 (318)
                      |.+++|++||++|+.||.+++++|++++  +++++++.||+||++||.|||++|+|||||   |    |.|+++|++.|+
T Consensus       380 ~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~pe---l----d~lv~~a~~~Ga  452 (520)
T 3v2u_C          380 LKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIE---T----NQICSIALANGS  452 (520)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHH---H----HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHH---H----HHHHHHHHhCCC
Confidence            7799999999999999999999999974  123459999999999999999999999999   9    999999999999


Q ss_pred             CcccccCCCCCceeec
Q 021052          302 TPPPTTPPPIQSKTKF  317 (318)
Q Consensus       302 ~GakltGaG~GG~v~~  317 (318)
                      +||||||||||||+|.
T Consensus       453 ~GarlTGaG~GGc~ia  468 (520)
T 3v2u_C          453 FGSRLTGAGWGGCTIH  468 (520)
T ss_dssp             SEEEECSSCSSSEEEE
T ss_pred             CEEEEecCCCCceEEE
Confidence            9999999999999973

PyMOL of 3v2u

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*	Back alignment and structure

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7	Back alignment and structure

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7	Back alignment and structure

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*	Back alignment and structure

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A	Back alignment and structure

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A	Back alignment and structure

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}	Back alignment and structure

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}	Back alignment and structure

>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}	Back alignment and structure

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*	Back alignment and structure

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}	Back alignment and structure

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A	Back alignment and structure

>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*	Back alignment and structure

>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}	Back alignment and structure

>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}	Back alignment and structure

>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*	Back alignment and structure

>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*	Back alignment and structure

>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A	Back alignment and structure

>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2	Back alignment and structure

>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5	Back alignment and structure

>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}	Back alignment and structure

>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*	Back alignment and structure

>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}	Back alignment and structure

>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		318
d1wuua1		215	d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi	2e-16
d1s4ea1		176	d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ	3e-15
d1piea1		205	d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact	4e-14
d1kkha1		180	d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met	9e-08
d1kvka1		225	d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus	1e-05
d1piea2		183	d.58.26.7 (A:214-396) Galactokinase {Lactococcus l	3e-05
d1s4ea2		171	d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro	4e-05
d1k47a1		194	d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)	6e-05
d1kvka2		169	d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt	0.003

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 2e-16
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 15  FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGG 73
           F+ +      LG GLSSS +   ++   L             AQ+  + E  F G   G 
Sbjct: 124 FSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGI 183

Query: 74  MDQAISIMAKSGFAELIDFNPIRTTDVQLP 103
           MDQ IS+M + G A LID   + T+ V L 
Sbjct: 184 MDQFISLMGQKGHALLIDCRSLETSLVPLS 213

PyMOL of d1wuua1

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176	Back information, alignment and structure

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205	Back information, alignment and structure

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180	Back information, alignment and structure

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225	Back information, alignment and structure

>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183	Back information, alignment and structure

>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171	Back information, alignment and structure

>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 194	Back information, alignment and structure

>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		318
d1piea2		183	Galactokinase {Lactococcus lactis [TaxId: 1358]}	100.0
d1s4ea2		171	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	100.0
d1wuua2		176	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s4ea1		176	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	99.89
d1wuua1		215	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1piea1		205	Galactokinase {Lactococcus lactis [TaxId: 1358]}	99.87
d1kvka2		169	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.68
d1kkha1		180	Mevalonate kinase {Archaeon Methanococcus jannasch	99.64
d1kvka1		225	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.6
d1kkha2		137	Mevalonate kinase {Archaeon Methanococcus jannasch	99.57
d1k47a2		135	Phosphomevalonate kinase (PMK) {Streptococcus pneu	99.47
d1k47a1		194	Phosphomevalonate kinase (PMK) {Streptococcus pneu	99.46
d1h72c1		163	Homoserine kinase {Archaeon Methanococcus jannasch	99.46
d1oj4a1		163	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	97.91
d1ueka1		148	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	97.61
d1fi4a1		188	Mevalonate 5-diphosphate decarboxylase {Baker's ye	97.53
d1h72c2		133	Homoserine kinase {Archaeon Methanococcus jannasch	96.74

>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3.4e-35  Score=254.86  Aligned_cols=141  Identities=21%  Similarity=0.239  Sum_probs=121.9

Q ss_pred             CcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCChhHHHHH
Q 021052          105 GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKE  184 (318)
Q Consensus       105 ~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~  184 (318)
                      |+.|+|+||++   +|.++++.||.|+.||+.|++.+.++++         +.+|+|+..                    
T Consensus         1 dy~lvi~dS~v---~h~L~~s~Yn~R~~ec~~a~~~v~~~~~---------~~~L~~v~~--------------------   48 (183)
T d1piea2           1 DYDIVIMNTNK---PRALTESKYNERFAETREALKRMQTRLD---------IQSLGELSN--------------------   48 (183)
T ss_dssp             TEEEEEEECCC---CCCTTCHHHHHHHHHHHHHHHHHHHHCC---------CSSGGGCCH--------------------
T ss_pred             CeEEEEEeCCC---CcCcCcchhHHHHHHHHHHHHHHHHhcC---------cchHhhhcH--------------------
Confidence            57899999999   6899999999999999999999988765         357888754                    


Q ss_pred             hhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 021052          185 FLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLM  264 (318)
Q Consensus       185 ~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~d~~~~~~~~lG~Lm  264 (318)
                               +++.+......+                  ..+++|++|+++|+.||.+++++|+++|     ++.||+||
T Consensus        49 ---------~~l~~~~~~l~d------------------~~~~rRa~Hvv~En~Rv~~a~~al~~~d-----~~~~G~lm   96 (183)
T d1piea2          49 ---------EEFDANTDLIGD------------------ETLIKRARHAVYENNRTKIAQKAFVAGN-----LTKFGELL   96 (183)
T ss_dssp             ---------HHHHHTGGGTCC------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHH
T ss_pred             ---------HHHHHHHhhcCC------------------HHHHHHHHHHHHHHHHHHHhhhhhhhcc-----HHHHHHHH
Confidence                     233332221001                  1578999999999999999999999999     99999999


Q ss_pred             HHHhHhhhhhccCCCccchhhhccHHHHHHHHHh-CCCCcccccCCCCCceee
Q 021052          265 NDSHHSCSVLYECSITSSARVHEILISMVTIARK-PGHTPPPTTPPPIQSKTK  316 (318)
Q Consensus       265 ~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~-~Ga~GakltGaG~GG~v~  316 (318)
                      ++||.||+++|+|||||   +    |.|++++++ .|++||||||||||||++
T Consensus        97 ~~Sh~sl~~~~evs~~e---l----D~Lv~~a~~~~G~~GaRmtGgGfGGcvi  142 (183)
T d1piea2          97 NASHASLKDDYEVTGLE---L----DTLAETAQKQAGVLGARMTGAGFGGCAI  142 (183)
T ss_dssp             HHHHHHHHHTSCCCCHH---H----HHHHHHHHHSTTEEEEEECSSCSSSEEE
T ss_pred             HHHHHHHHHHhcCCCch---H----HHHHHHHHHhCCCeEeeccccCCCceEE
Confidence            99999999999999999   9    999999986 599999999999999997

PyMOL of d1piea2

>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}	Back information, alignment and structure

>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}	Back information, alignment and structure

>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure