Citrus Sinensis ID: 021065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mnsvfsaddfsdsflsspspppasfhalpmnrsqSEWELEKFLQEvtvspraissssasdnsvpavigpsvmsksrayeigddDVVEIKkshrdqsldppvipsstapvdsdEYRAYLKTKLDLACAAVAlrtapvkpedksslienqtqaakpselgsqAMATVNVSTahdalgthpkadfrplgsadlpavqarpaaqvrqstsgssredsdddelegdtetiegldsVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG
Flexible Loop (DISEMBL)
mnsvfsaddfsdsflsSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPraissssasdnsvpavigpsvmsksrAYEIGDDDVVEIKKshrdqsldppvipsstapvdsDEYRAYLKTKLDLACAAVALRtapvkpedksslIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVqarpaaqvrqstsgssredsdddelegdtetiegldsvddkrarrmlsnresarrsrrrkqAHLNEletqagqlraEHSSLLKGLTDvnqkydesavnnriLKADIETLRAKLYMFIEIFLGENG
Low Complexity Region (SEG)
MNSVfsaddfsdsflsspspppasfhalpMNRSQSEWELEKFLQEVTvspraissssasdnsvpavIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLpavqarpaaqvrqstsgssredsdddelegdtetiegLDSVDDKRARRMLsnresarrsrrrKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG
Disordered region (IsUnstruct)
*****************************************************************************************************************YRAYLKTKLDLACAAVALRT*************************************************************************************************************************************************TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG***
Disordered Region (DISOPRED)
*NSVFSADDFSDSF************************L*****************************************************************************************************************************************************************************************************************SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN*
Disordered Region (DISEMBL)
*******************PPPASFHALPMNRSQSEWELEKFLQEVTV***************PAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPA******************************ETIEGLDSVDDKRARRM***************AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG
Disordered Region (DISPRO)
****FSADDFSDSFLS********************WELEKFLQEVTV*********************************************************TAPVDSDEYRAYLKTKLDLACAAVALRTAP********************************************************************************************************************RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNxxxxxxxxxxxxxxxxxxxxxxxxxxxxHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q99090	401	Light-inducible protein C	N/A	no	0.855	0.678	0.480	1e-47
O22763	411	Basic leucine zipper 10 O	yes	no	0.883	0.683	0.433	6e-40
Q9M1G6	403	Basic leucine zipper 25 O	no	no	0.877	0.692	0.449	5e-35
B9DGI8	314	Basic leucine zipper 63 O	no	no	0.638	0.646	0.417	5e-32
Q9FUD3	277	Basic leucine zipper 9 OS	no	no	0.377	0.433	0.480	9e-22
P12959	453	Regulatory protein opaque	N/A	no	0.289	0.203	0.526	6e-20
P23922	349	Transcription factor HBP-	N/A	no	0.289	0.263	0.382	1e-07
Q9SJN0	442	Protein ABSCISIC ACID-INS	no	no	0.235	0.169	0.412	1e-06
P24068	151	Ocs element-binding facto	N/A	no	0.295	0.622	0.357	4e-06
P42777	270	G-box-binding factor 4 OS	no	no	0.176	0.207	0.482	5e-06

>sp|Q99090|CPRF2_PETCR Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/310 (48%), Positives = 199/310 (64%), Gaps = 38/310 (12%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           M+ VFS +D SD F S P+   +S   L MNRS SEW  + FLQ+          +SA +
Sbjct: 1   MDRVFSVEDISDQFWSPPAREDSS--KLVMNRSDSEWAFQSFLQQ----------ASALE 48

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKT 120
           +S P    P  ++       GD     +K        +P  IP++  PVDS++Y+AYLK+
Sbjct: 49  SSQPLPSDPVPVA-------GD-----VK--------NPVEIPANV-PVDSEDYQAYLKS 87

Query: 121 KLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPK 179
           +LDLACAAVAL R + +KP+D ++L++N +QA+  S+L SQ        + HD      K
Sbjct: 88  RLDLACAAVALTRASSLKPQDSAALLDNGSQASNTSQLVSQVPPK---GSGHDLSKEEDK 144

Query: 180 ADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDD-ELEGDTETIEGLDSVDDKRARR 238
                  +  LPA+Q + A QV+ +TSGSSR+ SDDD ELEG+TET    D  D KR RR
Sbjct: 145 EALAATATPLLPALQKKSAIQVKSTTSGSSRDHSDDDDELEGETETTRNGDPSDAKRVRR 204

Query: 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298
           MLSNRESARRSRRRKQAH+ ELETQ  QLR E+SSLLK LTD++Q+Y+++AV+NR+LKAD
Sbjct: 205 MLSNRESARRSRRRKQAHMTELETQVSQLRVENSSLLKRLTDISQRYNDAAVDNRVLKAD 264

Query: 299 IETLRAKLYM 308
           IET+RAK+ M
Sbjct: 265 IETMRAKVKM 274

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Petroselinum crispum (taxid: 4043)

>sp|O22763|BZP10_ARATH Basic leucine zipper 10 OS=Arabidopsis thaliana GN=BZIP10 PE=1 SV=2

 Score =  164 bits (416), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 138/318 (43%), Positives = 181/318 (56%), Gaps = 37/318 (11%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALP-----MNRSQSEWELEKFLQEVTVSPRAISS 55
           MNS+FS DDFSD F  +P  P     + P     +++SQ EW  E FL+E++ S  A+SS
Sbjct: 1   MNSIFSIDDFSDPFWETPPIPLNPDSSKPVTADEVSQSQPEWTFEMFLEEISSS--AVSS 58

Query: 56  SSASDNSVPAVIG----PSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDS 111
               +N+  A++G     S+ S S   +  DD     + S       P  + + T  VDS
Sbjct: 59  EPLGNNNN-AIVGVSSAQSLPSVSGQNDFEDDSRFRDRDSGNLDCAAP--MTTKTVIVDS 115

Query: 112 DEYRAYLKTKLDLACA-AVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTA 170
           D+YR  LK KL+  CA  V+LR   VKPED +S  E Q Q  + S L             
Sbjct: 116 DDYRRVLKNKLETECATVVSLRVGSVKPEDSTSSPETQLQPVQSSPL------------T 163

Query: 171 HDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDS 230
              LG           ++ LPA   +    ++Q TSGSSRE SDD++L+ + ET   L  
Sbjct: 164 QGELGV----------TSSLPAEVKKTGVSMKQVTSGSSREYSDDEDLDEENETTGSLKP 213

Query: 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290
            D K++RRMLSNRESARRSRRRKQ   ++LETQ   L+ EHSSLLK L+++N KYDE+AV
Sbjct: 214 EDVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEAAV 273

Query: 291 NNRILKADIETLRAKLYM 308
            NRILKADIETLRAK+ M
Sbjct: 274 GNRILKADIETLRAKVKM 291

Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1G6|BZP25_ARATH Basic leucine zipper 25 OS=Arabidopsis thaliana GN=BZIP25 PE=1 SV=1

 Score =  148 bits (373), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 150/334 (44%), Positives = 191/334 (57%), Gaps = 55/334 (16%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFH----------ALPMNRSQSEWELEKFLQEVTVSP 50
           M+ VFS DD ++SF   P+P P+             A  M RSQSEW   + + E++ S 
Sbjct: 1   MHIVFSVDDLTESFWPVPAPAPSPGSSSTPSPTQNVADGMTRSQSEWAFHRLINELSGS- 59

Query: 51  RAISSSSASDNSVPAVIGPSVMSKSRAYEIGDD--DVVEIKK--SHR-----DQSLDPPV 101
                SS + N++     P V S SR  E  D+  DVVEI+K  +HR     DQ  +   
Sbjct: 60  ----DSSPTTNTIERS-PPPVQSLSRLEETVDETEDVVEIQKPQNHRRLPVDDQGKNRNR 114

Query: 102 IPSS-----TAPV--DSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKP 154
            PSS     +APV  D ++Y A LK+KL+LACAAVA R   VKPED S+   NQ      
Sbjct: 115 APSSDPVDSSAPVVVDPNQYHAILKSKLELACAAVARRVGTVKPEDSSASASNQ------ 168

Query: 155 SELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSD 214
                QA  ++   T+  A        F P  S      Q +P    RQ TS SSR+DSD
Sbjct: 169 ----KQAQGSIVAQTSPGASSVR----FSPTTS-----TQKKPDVPARQ-TSISSRDDSD 214

Query: 215 DDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           DD+L+GD +  +  D    KRARRMLSNRESARRSRRRKQ  +NE +TQ GQLRAEHS+L
Sbjct: 215 DDDLDGDADNGDPTDV---KRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTL 271

Query: 275 LKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308
           +  L+D+N KYD +AV+NRIL+ADIETLR K+ M
Sbjct: 272 INRLSDMNHKYDAAAVDNRILRADIETLRTKVKM 305

Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DGI8|BZP63_ARATH Basic leucine zipper 63 OS=Arabidopsis thaliana GN=BZIP63 PE=1 SV=1

 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/280 (41%), Positives = 151/280 (53%), Gaps = 77/280 (27%)

Query: 30  MNRSQSEWELEKFLQEVTVSPRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIK 89
           +NRS SEW   +F+QE        SS++A D       G SV S                
Sbjct: 24  LNRSASEWAFNRFIQE--------SSAAADDGESTTACGVSVSS---------------- 59

Query: 90  KSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQ 148
                    PP +P     VDS+EYRA+LK+KL+LACAAVA+ R   +KP+D S   +N 
Sbjct: 60  ---------PPNVP-----VDSEEYRAFLKSKLNLACAAVAMKRGTFIKPQDTSGRSDNG 105

Query: 149 TQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGS 208
              A  SE  S A +                    P+ S+ +              TSGS
Sbjct: 106 --GANESEQASLASSKAT-----------------PMMSSAI--------------TSGS 132

Query: 209 SREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLR 268
             E S D+E E D ET   ++  + KR +RMLSNRESARRSRRRKQAHL+ELETQ  QLR
Sbjct: 133 --ELSGDEE-EADGET--NMNPTNVKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLR 187

Query: 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308
            E+S L+KGLTDV Q +++++V NR+LKA+IETLRAK+ M
Sbjct: 188 VENSKLMKGLTDVTQTFNDASVENRVLKANIETLRAKVKM 227

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUD3|BZIP9_ARATH Basic leucine zipper 9 OS=Arabidopsis thaliana GN=BZIP9 PE=1 SV=1

 Score =  104 bits (260), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 84/127 (66%), Gaps = 7/127 (5%)

Query: 187 SADLPAVQARPAAQ--VRQSTSGSSREDSDDDELE---GDTETIEGLDSVDDKRARRMLS 241
           SAD P    +P  +  VR++TSGSS  +SDD++ E   G +E     D  D KR RRM S
Sbjct: 72  SADSPVSANKPEVRGGVRRTTSGSSHVNSDDEDAETEAGQSEMTN--DPNDLKRIRRMNS 129

Query: 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301
           NRESA+RSRRRKQ +L +LETQ   L+ ++S+L K L D  Q++  +  NNR+LK+D+ET
Sbjct: 130 NRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRSAGTNNRVLKSDVET 189

Query: 302 LRAKLYM 308
           LR K+ +
Sbjct: 190 LRVKVKL 196

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P12959|OP2_MAIZE Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 216 DELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 275
           ++++G+ E I G     ++R R+  SNRESARRSR RK AHL ELE Q  QL+AE+S LL
Sbjct: 210 EDMDGEVE-ILGFKMPTEERVRKKESNRESARRSRYRKAAHLKELEDQVAQLKAENSCLL 268

Query: 276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308
           + +  +NQKY+++ V+NR+L+AD+ETLRAK+ M
Sbjct: 269 RRIAALNQKYNDANVDNRVLRADMETLRAKVKM 301

Involved in the regulation of the endosperm-specific production of albumin b-32 and other zein proteins. It is a trans-acting transcriptional activator that binds to the consensus sequence 5'-GATGAYRTGR-3'.

Zea mays (taxid: 4577)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 23/115 (20%)

Query: 186 GSADLPAVQARPAAQVRQSTSGSSR-EDSDDDELEGDTETIEGLDSVDDKRARRMLSNRE 244
           GS+ +PA++ +         SGS+R E  D+ EL               K+ +R LSNRE
Sbjct: 227 GSSPVPAMRGK-------VPSGSARGEQWDEREL---------------KKQKRKLSNRE 264

Query: 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299
           SARRSR RKQA   EL  +A  L++E+SSL   L  + ++Y+E    N  LKA +
Sbjct: 265 SARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSKNTSLKAKL 319

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q9SJN0|ABI5_ARATH Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 5/80 (6%)

Query: 214 DDDELEGDTETIEG-LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHS 272
           D   L G    ++G ++ V ++R RRM+ NRESA RSR RKQA+  ELE +  QL+ E++
Sbjct: 336 DMGGLRGRKRVVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENA 395

Query: 273 SLLKGLTDV----NQKYDES 288
            L   L ++     Q+Y ES
Sbjct: 396 QLKHALAELERKRKQQYFES 415

Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth. Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 and Em6 genes promoters. Can also trans-activate its own promoter, suggesting that it is autoregulated. Plays a role in sugar-mediated senescence.

Arabidopsis thaliana (taxid: 3702)

>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 220 GDTETIEGLDSVD-DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278
           G T   +G  + D  +R +R LSNRESARRSR RKQ HL+EL  +  +L+A+++ +    
Sbjct: 11  GRTSGSDGDSAADTHRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARA 70

Query: 279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF 313
            D+  +Y      N +L+A    L  +L    E+ 
Sbjct: 71  RDIASQYTRVEQENTVLRARAAELGDRLRSVNEVL 105

May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Zea mays (taxid: 4577)

>sp|P42777|GBF4_ARATH G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 37/56 (66%)

Query: 225 IEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 280
           +E +D    +R +RM+ NRESA RSR RKQA+  ELET A +L  E+  LLK + +
Sbjct: 180 MEAMDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEE 235

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
298204854	383	unnamed protein product [Vitis vinifera]	0.880	0.731	0.486	1e-55
225451342	423	PREDICTED: light-inducible protein CPRF2	0.880	0.661	0.486	2e-55
16797791	450	bZIP transcription factor [Nicotiana tab	0.908	0.642	0.467	6e-54
147796457	446	hypothetical protein VITISV_022136 [Viti	0.883	0.630	0.459	2e-53
255559911	441	DNA binding protein, putative [Ricinus c	0.893	0.643	0.506	5e-53
444300790	444	bZIP transcription factor family protein	0.899	0.644	0.446	8e-52
351720703	417	bZIP protein [Glycine max] gi|183014149|	0.908	0.693	0.463	2e-50
351725229	404	bZIP transcription factor bZIP89 [Glycin	0.908	0.715	0.460	8e-49
224123412	371	predicted protein [Populus trichocarpa]	0.770	0.660	0.459	3e-48
118486477	445	unknown [Populus trichocarpa]	0.924	0.660	0.539	1e-47

>gi|298204854|emb|CBI34161.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 157/323 (48%), Positives = 206/323 (63%), Gaps = 43/323 (13%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           M+ VFS D+  + F +SP    +S     MNRS SEW  ++FLQE +  P + S S++  
Sbjct: 1   MDRVFSVDEIPEQFWASPPS--SSKEPSQMNRSASEWAFQRFLQESSSPPSSSSVSASGP 58

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRD--------------QSLDPPVIPSST 106
           ++                   ++DVVE+K    D               SLDPP      
Sbjct: 59  SA-------------------ENDVVELKVPIDDPKPTPAPPAPPAPATSLDPP----PN 95

Query: 107 APVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATV 165
            P+DS+EY+A+LK++L+LACAAVAL R + VKP+D ++L +  +QA+K S+L SQA    
Sbjct: 96  VPIDSEEYQAFLKSRLNLACAAVALSRASFVKPQDSAALADTGSQASKTSQLRSQAPCK- 154

Query: 166 NVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETI 225
              + +D  G   K    PLG   LPA+Q +  AQ+R +TS SSRE SDDDE+EG+TETI
Sbjct: 155 --GSGYDLSGAPDKEAGGPLGIPSLPAMQKKAGAQLRPTTSESSREHSDDDEVEGETETI 212

Query: 226 EGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285
           E +D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  QLR E+SSLLK LTD++QKY
Sbjct: 213 ENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLENSSLLKRLTDISQKY 272

Query: 286 DESAVNNRILKADIETLRAKLYM 308
           +E+AV+NR+LKAD+ETLRAK+ M
Sbjct: 273 NEAAVDNRVLKADVETLRAKVKM 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451342|ref|XP_002279520.1| PREDICTED: light-inducible protein CPRF2-like [Vitis vinifera]

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 157/323 (48%), Positives = 206/323 (63%), Gaps = 43/323 (13%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           M+ VFS D+  + F +SP    +S     MNRS SEW  ++FLQE +  P + S S++  
Sbjct: 1   MDRVFSVDEIPEQFWASPPS--SSKEPSQMNRSASEWAFQRFLQESSSPPSSSSVSASGP 58

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRD--------------QSLDPPVIPSST 106
           ++                   ++DVVE+K    D               SLDPP      
Sbjct: 59  SA-------------------ENDVVELKVPIDDPKPTPAPPAPPAPATSLDPP----PN 95

Query: 107 APVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATV 165
            P+DS+EY+A+LK++L+LACAAVAL R + VKP+D ++L +  +QA+K S+L SQA    
Sbjct: 96  VPIDSEEYQAFLKSRLNLACAAVALSRASFVKPQDSAALADTGSQASKTSQLRSQAPCK- 154

Query: 166 NVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETI 225
              + +D  G   K    PLG   LPA+Q +  AQ+R +TS SSRE SDDDE+EG+TETI
Sbjct: 155 --GSGYDLSGAPDKEAGGPLGIPSLPAMQKKAGAQLRPTTSESSREHSDDDEVEGETETI 212

Query: 226 EGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285
           E +D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  QLR E+SSLLK LTD++QKY
Sbjct: 213 ENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLENSSLLKRLTDISQKY 272

Query: 286 DESAVNNRILKADIETLRAKLYM 308
           +E+AV+NR+LKAD+ETLRAK+ M
Sbjct: 273 NEAAVDNRVLKADVETLRAKVKM 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16797791|gb|AAL27150.1| bZIP transcription factor [Nicotiana tabacum]

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 159/340 (46%), Positives = 199/340 (58%), Gaps = 51/340 (15%)

Query: 1   MNSVFSA-DDFSDSFLSSP--------SPPPASF--HALPMNRSQSEWELEKFLQEVTVS 49
           M  VFS  DD  D F S+P        SP  A+   ++  MNRS SEW  ++FLQE T +
Sbjct: 1   MERVFSMEDDIGDHFWSTPPTADLGVDSPTAAAAVSYSKMMNRSSSEWAFQRFLQEATAA 60

Query: 50  PRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTA-- 107
             + SS             P  M+ S +     +DVVEIK    D++L  P +  STA  
Sbjct: 61  GTSTSSPPQ----------PPTMTASSSSSSHQNDVVEIK----DENLSIPNLNPSTALN 106

Query: 108 ---------------PVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQA 151
                           VDS+EY+A+LK++L LACAAVAL R   + P+D  S   +    
Sbjct: 107 SKPASSFGLAPPPNIAVDSEEYQAFLKSQLHLACAAVALTRGKSLNPQDSGSTAHD---- 162

Query: 152 AKPSELGSQAMATVNVST---AHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGS 208
            K SE  S A +  +VST     +      K    P+G   LP VQ +P  QVR +TSGS
Sbjct: 163 -KGSETASAAQSGSHVSTLGSGQEVAKIQDKDAGGPVGIPSLPPVQKKPVVQVRSTTSGS 221

Query: 209 SREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLR 268
           SRE SDDDE EG+ ET +G+D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  QLR
Sbjct: 222 SREQSDDDEAEGEAETTQGMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLR 281

Query: 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308
            E+SSLLK LTD++QKY+E+AV+NR+LKAD+ETLR K+ M
Sbjct: 282 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRTKVKM 321

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147796457|emb|CAN74806.1| hypothetical protein VITISV_022136 [Vitis vinifera]

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 155/337 (45%), Positives = 206/337 (61%), Gaps = 56/337 (16%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           M+ VFS D+  + F +SP    +   +  MNRS SEW  ++FLQE +  P + S S++  
Sbjct: 1   MDRVFSVDEIPEQFWASPPSS-SKEPSSQMNRSASEWAFQRFLQESSSPPSSSSVSASGP 59

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQ-----------SLDPPVIPSSTAPV 109
           ++                   ++DVVE+K    D            SLDPP       P+
Sbjct: 60  SA-------------------ENDVVELKVPIDDPKPTPAPPAPATSLDPP----PNVPI 96

Query: 110 DSDEYRAYLKTKLDLACAAVAL------------------RTAPVKPEDKSSLIENQTQA 151
           DS+EY+A+LK++L+LACAAVAL                  + + VKP+D ++L +  +QA
Sbjct: 97  DSEEYQAFLKSRLNLACAAVALSRVTVDQLPLPLHKLQIIQASFVKPQDSAALADTGSQA 156

Query: 152 AKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSRE 211
           +K S+L SQA       + +D  G   K    PLG   LPA+Q +  AQ+R +TS SSRE
Sbjct: 157 SKTSQLRSQAPCK---GSGYDLSGAPDKEAGGPLGIPSLPAMQKKAGAQLRPTTSESSRE 213

Query: 212 DSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEH 271
            SDDDE+EG+TETIE +D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  QLR E+
Sbjct: 214 HSDDDEVEGETETIENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLEN 273

Query: 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308
           SSLLK LTD++QKY+E+AV+NR+LKAD+ETLRAK+ M
Sbjct: 274 SSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKM 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559911|ref|XP_002520974.1| DNA binding protein, putative [Ricinus communis] gi|223539811|gb|EEF41391.1| DNA binding protein, putative [Ricinus communis]

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 160/316 (50%), Positives = 196/316 (62%), Gaps = 32/316 (10%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           MNS+FS DDFSD    +P           M RS SEWELEKFL+E    P + S    ++
Sbjct: 1   MNSIFSVDDFSDLLWQAP-----------MTRSASEWELEKFLEEF---PASSSICDNNN 46

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSH-RDQSLDPPVIPSSTAPVDSDEYRAYLK 119
           N    V  P  ++ S+  EI +D+VVEI+K     Q LD   +P    P D+D Y A+LK
Sbjct: 47  NDTTTVAVPKSLTSSKRREICEDEVVEIEKVEINSQPLDRAPLP---PPEDTDGYHAFLK 103

Query: 120 TKLDLACAAVAL---RTAPVKPED-KSSLIENQTQAAKPSELGSQAMATVNVSTAHDALG 175
           ++LDLACAA A    R + VKPE   SS  E+Q    K  E GS  ++       H    
Sbjct: 104 SQLDLACAAAAAAKSRDSSVKPEGVSSSFAEDQRVINKNCESGSSPVS----GNGHGITK 159

Query: 176 THPKADFRPLGSADLPAVQARPAAQ---VRQSTSGSSREDSDDDELEGDTETIEGLDSVD 232
              +AD    GS  LPA+ + P  Q   VRQ+TSGSSREDSDDDELEGDTET + +D  D
Sbjct: 160 GQNEADG---GSLRLPALPSMPRKQEVPVRQATSGSSREDSDDDELEGDTETNDNMDPAD 216

Query: 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292
           +KRARRM SNRESARRSRRRKQA LNELE Q GQLR E +SLL  LTD+N+K DE++V+N
Sbjct: 217 EKRARRMQSNRESARRSRRRKQAQLNELEAQVGQLRDERTSLLTRLTDINKKCDEASVDN 276

Query: 293 RILKADIETLRAKLYM 308
           RIL A+IETLR K+ M
Sbjct: 277 RILNANIETLRTKVKM 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444300790|gb|AGD98704.1| bZIP transcription factor family protein 6 [Camellia sinensis]

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 154/345 (44%), Positives = 203/345 (58%), Gaps = 59/345 (17%)

Query: 1   MNSVFSADDFSDSFLSSPSP-------------PPASFHALPMNRSQSEWELEKFLQEVT 47
           M+ VFS DD +D F S P+P               +  H   MNRS+SEW  ++FLQE  
Sbjct: 1   MDRVFSVDDMADQFWS-PAPVRLPMTAEEETTSSSSKVHPTMMNRSESEWAFQRFLQE-- 57

Query: 48  VSPRAISSSSASDNSV--PAVIGPSVMSKSRAYEIGDDDVVEIK------------KSHR 93
                     A +N+    +   PS  + + +  I ++DVVEIK              HR
Sbjct: 58  ----------ARNNTTHSESESSPSASAVASSSAIPENDVVEIKDQPQPQPQPQPRAQHR 107

Query: 94  D---------QSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSS 143
                      S+ PP +P     VDS+EY+A+LK++L+LACAAVAL R + VK ++   
Sbjct: 108 QSTNQQTASFNSVAPPNVP-----VDSEEYQAFLKSRLNLACAAVALTRASFVKSQESPI 162

Query: 144 LIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQ 203
           + +N +QA+   +LG QA+      + +       K    PLG   LPA++ +   QV+ 
Sbjct: 163 VADNGSQASSTGQLGMQALGE---GSGYGLPKGQDKDVIGPLGIPSLPAMEKKSVVQVKS 219

Query: 204 STSGSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQ 263
           +TSGSSRE SDDDE EG+TET    D  D KR RRMLSNRESARRSRRRKQAHL ELETQ
Sbjct: 220 TTSGSSREQSDDDEAEGETET-NNTDPTDAKRVRRMLSNRESARRSRRRKQAHLTELETQ 278

Query: 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM 308
             QLR E+SSLLK L+D++QKY+ESAV+NR+LKAD+ETLRAK+ M
Sbjct: 279 VSQLRVENSSLLKRLSDISQKYNESAVDNRVLKADVETLRAKVKM 323

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720703|ref|NP_001237953.1| bZIP protein [Glycine max] gi|183014149|dbj|BAG24402.1| bZIP protein [Glycine max]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 145/313 (46%), Positives = 193/313 (61%), Gaps = 24/313 (7%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFH-ALPMNRSQSEWELEKFLQEVTVSPRAISSSSAS 59
           M+ VFS DD SD F   P  P +  + +  M+RS SEW  ++F+QE + S  +  SSS+ 
Sbjct: 1   MDRVFSVDDISDHFWPPPPIPVSGANTSSQMSRSASEWAFQRFIQEASASAPSPPSSSSP 60

Query: 60  DNSVPAVIGPSVMSKSRAYEIGDDDVVEIKK-SHRDQSLDPPVIPSSTAPV--DSDEYRA 116
            + V               EI D         SH        V+PS   PV  DS+EY+A
Sbjct: 61  ADVV-------------FVEIDDQPKPTPPPPSHGG------VLPSDPGPVALDSEEYQA 101

Query: 117 YLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALG 175
           +LK+KL+LACAAVA+ R +  K +D S   +  +Q   PS +GSQ  +  ++ + +D   
Sbjct: 102 FLKSKLNLACAAVAMTRGSLAKSQDPSPFSDGGSQPTNPSLVGSQTTSKGSIPSGNDQSK 161

Query: 176 THPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKR 235
              K    P+G   +PA+Q +PA  +R STSGSSRE SDD+++EG+T   +  D  D KR
Sbjct: 162 LQDKDINAPVGIPSIPAIQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKR 221

Query: 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295
            RRMLSNRESARRSRRRKQAHL +LETQ  QLR E+S+LLK LTDV+QKY +SAV+NR+L
Sbjct: 222 VRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVL 281

Query: 296 KADIETLRAKLYM 308
           KAD+ETLRAK+ M
Sbjct: 282 KADVETLRAKVKM 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725229|ref|NP_001237085.1| bZIP transcription factor bZIP89 [Glycine max] gi|113367196|gb|ABI34655.1| bZIP transcription factor bZIP89 [Glycine max]

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 144/313 (46%), Positives = 191/313 (61%), Gaps = 24/313 (7%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFH-ALPMNRSQSEWELEKFLQEVTVSPRAISSSSAS 59
           M+ VFS DD SD F   P  P +  + +  M+RS SEW  ++F+QE + S  +  SSS+ 
Sbjct: 1   MDRVFSVDDISDHFWPPPPIPVSGANTSSQMSRSASEWAFQRFIQEASASAPSPPSSSSP 60

Query: 60  DNSVPAVIGPSVMSKSRAYEIGDDDVVEIKK-SHRDQSLDPPVIPSSTAPV--DSDEYRA 116
            + V               EI D         SH        V+PS   PV  DS+EY+A
Sbjct: 61  ADVV-------------FVEIDDQPKPTPPPPSHGG------VLPSDPGPVALDSEEYQA 101

Query: 117 YLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALG 175
           +LK+KL+LACAAVA+ R +  K +D S   E  +Q   PS + SQ  +  ++ + +D   
Sbjct: 102 FLKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKGSIPSENDPSK 161

Query: 176 THPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKR 235
              K    P+G   +PA+Q +PA  +R STSGSSRE SDD+++EG+T   +  D  D KR
Sbjct: 162 LQDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKR 221

Query: 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295
            RRMLSNRESARRSRRRKQAHL +LETQ  QLR E+S+LLK LTDV+QKY +SAV+NR+L
Sbjct: 222 VRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVL 281

Query: 296 KADIETLRAKLYM 308
           KAD+ETLR K+ M
Sbjct: 282 KADVETLRTKVKM 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123412|ref|XP_002319072.1| predicted protein [Populus trichocarpa] gi|222857448|gb|EEE94995.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/294 (45%), Positives = 176/294 (59%), Gaps = 49/294 (16%)

Query: 30  MNRSQSEWELEKFLQEVTVSP--RAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVE 87
           MNRS+SEW  E+FLQE +         +++AS  + PA+I                    
Sbjct: 1   MNRSESEWAFERFLQEASACSFSNGTCATAASSFAAPAII-------------------- 40

Query: 88  IKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIE 146
                               PV+SD+Y A+LK+KL+LACAAVAL R + VKP D  +  E
Sbjct: 41  --------------------PVESDDYHAFLKSKLNLACAAVALTRASFVKPLDSPAAAE 80

Query: 147 NQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTS 206
           + +QA+  S+LGS A +       +D   +  K    PLG+  LP++Q + A  V+ +TS
Sbjct: 81  SGSQASNTSQLGSHAPSK---GAGYDLPISQDKDANEPLGTPSLPSMQRKSAVTVKPTTS 137

Query: 207 GSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQ 266
            SSRE S+DDE E +TE  E +   D KR RRMLSNRESARRSR RKQAHL ELETQ  Q
Sbjct: 138 VSSRELSEDDENEAETELTENMQPADAKRVRRMLSNRESARRSRSRKQAHLTELETQVAQ 197

Query: 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM---FIEIFLGEN 317
           LR E+SSLLK LTD++QKY+ESAV+NR+LKAD+ETLRAK+ M    ++ F G N
Sbjct: 198 LRVENSSLLKSLTDISQKYNESAVDNRVLKADVETLRAKVKMAEETVKRFTGLN 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486477|gb|ABK95078.1| unknown [Populus trichocarpa]

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 171/317 (53%), Positives = 201/317 (63%), Gaps = 23/317 (7%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           MNSVFS DDFSD F  S  PP     A  MNRS+SEW LEKFLQEV+      ++S +SD
Sbjct: 1   MNSVFSVDDFSDPFWPS-PPPSPPSTAPAMNRSESEWALEKFLQEVS------AASVSSD 53

Query: 61  NSVPAVIGPSVMSKSRAYEI----GDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRA 116
            ++ A   PS +S+S    I    G+D+VVEI K         P+  + T P+DSDEYRA
Sbjct: 54  TNIAA---PSALSQSSTSSIPPENGEDEVVEITKHPNPHPQ--PLGRNLTNPIDSDEYRA 108

Query: 117 YLKTKLDLACAAVAL--RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDAL 174
           +LK+KLD AC A A+   +  +KPED SSL+E+Q  AA    LG+QA       T H   
Sbjct: 109 FLKSKLDRACTAAAMSRESDVIKPEDFSSLLEDQRLAAGNVSLGTQAF-----RTGHGIS 163

Query: 175 GTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDK 234
                AD    G   LP  Q +   Q RQ+TSGSSREDSDDD+LEGDT T E  D  D K
Sbjct: 164 MAQIGADGGSPGIPALPTAQKKQEVQTRQTTSGSSREDSDDDDLEGDTGTNENRDPTDAK 223

Query: 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294
           R RRM SNRESARRSRRRKQA LNE ETQ GQLR E SSLL   TDV+QK D ++V+NRI
Sbjct: 224 RVRRMQSNRESARRSRRRKQAQLNERETQVGQLRDERSSLLSRFTDVHQKCDAASVDNRI 283

Query: 295 LKADIETLRAKLYMFIE 311
           LKADIETLRAK+ M  E
Sbjct: 284 LKADIETLRAKVKMVEE 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:505006398	403	BZIP25 "basic leucine zipper 2	0.251	0.198	0.562	1.8e-34
TAIR|locus:2184251	314	BZO2H3 "AT5G28770" [Arabidopsi	0.235	0.238	0.56	7e-34
TAIR|locus:2149403	277	BZIP9 "AT5G24800" [Arabidopsis	0.245	0.281	0.410	4.3e-09
TAIR|locus:2053124	171	bZIP2 "AT2G18160" [Arabidopsis	0.261	0.485	0.301	5.7e-05

TAIR|locus:505006398 BZIP25 "basic leucine zipper 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
 Identities = 45/80 (56%), Positives = 55/80 (68%)

Query:   229 DSVDDKRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288
             D  D KRARRML            KQ  +NE +TQ GQLRAEHS+L+  L+D+N KYD +
Sbjct:   226 DPTDVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLINRLSDMNHKYDAA 285

Query:   289 AVNNRILKADIETLRAKLYM 308
             AV+NRIL+ADIETLR K+ M
Sbjct:   286 AVDNRILRADIETLRTKVKM 305

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:2000693 "positive regulation of seed maturation" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2184251 BZO2H3 "AT5G28770" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
 Identities = 42/75 (56%), Positives = 54/75 (72%)

Query:   234 KRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293
             KR +RML            KQAHL+ELETQ  QLR E+S L+KGLTDV Q +++++V NR
Sbjct:   153 KRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQTFNDASVENR 212

Query:   294 ILKADIETLRAKLYM 308
             +LKA+IETLRAK+ M
Sbjct:   213 VLKANIETLRAKVKM 227

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2149403 BZIP9 "AT5G24800" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 32/78 (41%), Positives = 45/78 (57%)

Query:   229 DSVDDKRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288
             D  D KR RRM             KQ +L +LETQ   L+ ++S+L K L D  Q++  +
Sbjct:   117 DPNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRSA 176

Query:   289 AVNNRILKADIETLRAKL 306
               NNR+LK+D+ETLR K+
Sbjct:   177 GTNNRVLKSDVETLRVKV 194

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IPI

TAIR|locus:2053124 bZIP2 "AT2G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 25/83 (30%), Positives = 41/83 (49%)

Query:   230 SVDDKRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289
             +VD+++ +RML            KQ H+++L  Q  QL  ++  +L  LT  +Q Y +  
Sbjct:    27 TVDERKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQ 86

Query:   290 VNNRILKADIETLRAKLYMFIEI 312
               N +L A +E L  +L    EI
Sbjct:    87 AENSVLTAQMEELSTRLQSLNEI 109


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.127   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      318       225   0.00077  113 3  11 23  0.46    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.31u 0.12s 19.43t   Elapsed:  00:00:00
  Total cpu time:  19.31u 0.12s 19.43t   Elapsed:  00:00:00
  Start:  Fri May 10 23:51:34 2013   End:  Fri May 10 23:51:34 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
smart00338	65	smart00338, BRLZ, basic region leucin zipper	2e-14
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	5e-10
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	2e-05
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	3e-05

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291
           D+KR RR   NRE+ARRSR RK+A + ELE +  QL AE+  L K +  + ++ ++    
Sbjct: 3   DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62

Query: 292 NR 293
             
Sbjct: 63  LE 64

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278
           + KR RR   NRE+ARRSR RK+A++ ELE +  +L AE+ +L   L
Sbjct: 3   ELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSEL 49

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           D RAR+   NRE+ARRSR RK   + +LE +  +L +E+S L
Sbjct: 1   DPRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDL 42

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 276
           D+ R RR   N E+ARRSR +K+    ELE +  +L  E++ L +
Sbjct: 3   DEYRDRRR-RNNEAARRSREKKKQREEELEERVKELEEENAQLRQ 46

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
smart00338	65	BRLZ basic region leucin zipper.	99.35
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.33
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.29
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.25
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.04
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.03
KOG3584	348	consensus cAMP response element binding protein an	99.0
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.11
KOG0837	279	consensus Transcriptional activator of the JUN fam	98.04
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.52
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.29
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.93
KOG3119	269	consensus Basic region leucine zipper transcriptio	96.82
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	96.38
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.04
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	95.96
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.77
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.71
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	95.64
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	95.64
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	95.44
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	95.42
PRK13169	110	DNA replication intiation control protein YabA; Re	95.39
PRK10884	206	SH3 domain-containing protein; Provisional	95.35
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.33
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	95.16
PRK13169	110	DNA replication intiation control protein YabA; Re	95.04
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.02
COG4467	114	Regulator of replication initiation timing [Replic	94.63
PRK10884	206	SH3 domain-containing protein; Provisional	94.56
PRK11637	428	AmiB activator; Provisional	94.52
PRK15422	79	septal ring assembly protein ZapB; Provisional	94.49
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	94.33
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.28
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.03
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.03
PRK15422	79	septal ring assembly protein ZapB; Provisional	93.78
PF04899	70	MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th	93.41
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.24
PRK11637	428	AmiB activator; Provisional	93.1
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.88
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.53
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.49
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	92.42
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	92.25
PRK00888	105	ftsB cell division protein FtsB; Reviewed	92.2
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	92.12
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	91.93
PF07412	200	Geminin: Geminin; InterPro: IPR022786 This family	91.92
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	91.82
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	91.77
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.63
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	91.58
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.37
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	91.32
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	91.19
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.97
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	90.95
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	90.9
PRK09039	343	hypothetical protein; Validated	90.84
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.83
PRK04406	75	hypothetical protein; Provisional	90.8
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	90.78
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	90.76
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.69
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	90.64
PRK02119	73	hypothetical protein; Provisional	90.62
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	90.58
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	90.45
COG4467	114	Regulator of replication initiation timing [Replic	90.23
PRK04325	74	hypothetical protein; Provisional	90.18
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	89.97
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	89.88
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	89.84
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.82
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	89.8
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.7
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	89.68
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	89.64
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	89.53
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	89.33
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	89.21
PRK02793	72	phi X174 lysis protein; Provisional	89.2
KOG3119	269	consensus Basic region leucine zipper transcriptio	89.17
PRK00846	77	hypothetical protein; Provisional	89.03
PRK00295	68	hypothetical protein; Provisional	88.61
PF14662	193	CCDC155: Coiled-coil region of CCDC155	88.57
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	88.54
PF10506	67	MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for U	88.53
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	88.34
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	88.2
PF14662	193	CCDC155: Coiled-coil region of CCDC155	88.14
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	88.06
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	88.06
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	87.92
smart00340	44	HALZ homeobox associated leucin zipper.	87.9
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	87.77
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	87.65
smart00338	65	BRLZ basic region leucin zipper.	87.65
PHA02562	562	46 endonuclease subunit; Provisional	87.62
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	87.5
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	87.38
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	87.36
PRK02119	73	hypothetical protein; Provisional	87.23
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	87.22
COG4942	420	Membrane-bound metallopeptidase [Cell division and	87.2
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	87.07
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	86.85
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	86.83
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	86.78
COG4942	420	Membrane-bound metallopeptidase [Cell division and	86.77
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.73
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	86.37
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	86.35
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	86.14
PRK00736	68	hypothetical protein; Provisional	86.04
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	86.02
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	86.01
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	85.76
PRK02793	72	phi X174 lysis protein; Provisional	85.75
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	85.62
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	85.36
PRK00295	68	hypothetical protein; Provisional	85.35
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	85.07
PRK09039	343	hypothetical protein; Validated	84.99
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	84.74
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	84.67
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	84.47
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	84.37
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	84.37
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	84.29
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	84.12
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	84.08
PF15294	278	Leu_zip: Leucine zipper	84.03
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	83.97
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	83.83
COG2433	652	Uncharacterized conserved protein [Function unknow	83.81
PF10186	302	Atg14: UV radiation resistance protein and autopha	83.73
PHA03162	135	hypothetical protein; Provisional	83.72
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	83.72
PRK13922	276	rod shape-determining protein MreC; Provisional	83.71
PRK10803	263	tol-pal system protein YbgF; Provisional	83.58
PF04899	70	MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th	83.55
PRK04325	74	hypothetical protein; Provisional	83.52
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	83.38
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	83.36
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	83.25
PRK04406	75	hypothetical protein; Provisional	83.17
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	83.11
PRK00736	68	hypothetical protein; Provisional	82.93
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	82.9
TIGR02231	525	conserved hypothetical protein. This family consis	82.57
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	82.55
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	82.15
PRK14127	109	cell division protein GpsB; Provisional	82.15
PHA03155	115	hypothetical protein; Provisional	82.12
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	82.02
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	81.78
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	81.71
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	81.71
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	81.59
PF04642	311	DUF601: Protein of unknown function, DUF601; Inter	81.52
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	81.46
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	81.44
KOG2077	832	consensus JNK/SAPK-associated protein-1 [Signal tr	81.41
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	81.38
PF06216	389	RTBV_P46: Rice tungro bacilliform virus P46 protei	81.21
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	80.81
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	80.79
KOG4571	294	consensus Activating transcription factor 4 [Trans	80.7
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	80.57
KOG1962	216	consensus B-cell receptor-associated protein and r	80.46
PRK13182	175	racA polar chromosome segregation protein; Reviewe	80.29
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	80.23
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	80.2
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	80.1

>smart00338 BRLZ basic region leucin zipper

Probab=99.35  E-value=6.2e-12  Score=94.84  Aligned_cols=61  Identities=41%  Similarity=0.566  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN  292 (318)
Q Consensus       232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN  292 (318)
                      ++|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..+..+|
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999999999999999999999999988766666655544

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.33  E-value=8.8e-12  Score=93.86  Aligned_cols=61  Identities=39%  Similarity=0.571  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN  292 (318)
Q Consensus       232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN  292 (318)
                      +.|+.+|+++||+||+++|.||++|+.+|+.+|..|..+|..|..++..|..++..|..+|
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5789999999999999999999999999999999999999999999999888888888776

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.29  E-value=2.5e-11  Score=113.48  Aligned_cols=81  Identities=27%  Similarity=0.370  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      -|+|-+||+|+||.+|+.+|.|||++++++|.+|..|..||+.|..++..|+.+.+.|.++|.+|..+++.|+..|..+.
T Consensus        66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~  145 (292)
T KOG4005|consen   66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK  145 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999887765


Q ss_pred             H
Q 021065          311 E  311 (318)
Q Consensus       311 ~  311 (318)
                      +
T Consensus       146 ~  146 (292)
T KOG4005|consen  146 Q  146 (292)
T ss_pred             H
Confidence            4

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.25  E-value=1.1e-11  Score=125.93  Aligned_cols=70  Identities=36%  Similarity=0.424  Sum_probs=67.3

Q ss_pred             cCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          227 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK  296 (318)
Q Consensus       227 ~~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lr  296 (318)
                      .+|++-.||+.|||+|||||..||+|||+|+..||.+++.|..||+.|++++..|++++..+..||.+||
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k  343 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK  343 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence            4678889999999999999999999999999999999999999999999999999999999999999985

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.04  E-value=2.9e-10  Score=114.23  Aligned_cols=73  Identities=30%  Similarity=0.428  Sum_probs=66.7

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       230 ~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      ++..||.||||+|.+||+.||+|||.|++.||.+|.....||++|.+++..       |+.+|+.|-+++..|++.+.+-
T Consensus       247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~-------Le~~N~sLl~qL~klQt~v~q~  319 (472)
T KOG0709|consen  247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE-------LELSNRSLLAQLKKLQTLVIQV  319 (472)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH-------HhhccHHHHHHHHHHHHHHhhc
Confidence            457899999999999999999999999999999999999999999888765       8889999999999999888764

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.03  E-value=1.8e-09  Score=79.13  Aligned_cols=51  Identities=39%  Similarity=0.629  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ  283 (318)
Q Consensus       232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~q  283 (318)
                      +.++.||+ +||++|++||.||++|+.+|+.+|..|+.+|..|..++..|..
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56788888 9999999999999999999999999999999999998887754

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.00  E-value=6.6e-10  Score=106.37  Aligned_cols=60  Identities=28%  Similarity=0.491  Sum_probs=54.3

Q ss_pred             CCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          228 LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE  287 (318)
Q Consensus       228 ~d~~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~  287 (318)
                      .++.-.||+-|++||||+||.+|+|||+|++.||.+|..|+.+|..|-++|..|+.-|..
T Consensus       285 aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~  344 (348)
T KOG3584|consen  285 AEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH  344 (348)
T ss_pred             chhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence            345568999999999999999999999999999999999999999999999998876653

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.11  E-value=4.9e-08  Score=78.76  Aligned_cols=58  Identities=38%  Similarity=0.512  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES  288 (318)
Q Consensus       231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l  288 (318)
                      .+.|..||.++||.+|+.||.||..++.+|+.++..|+.+...|..++..+..++..+
T Consensus        27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~l   84 (92)
T PF03131_consen   27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDEL   84 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999988888777777766655554443

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=98.04  E-value=1.9e-05  Score=75.12  Aligned_cols=52  Identities=29%  Similarity=0.448  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK  284 (318)
Q Consensus       233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk  284 (318)
                      .|-.|..++||++|.+||.||.+||..||.+|..|..+|..|-..+..|+.+
T Consensus       205 ~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~  256 (279)
T KOG0837|consen  205 IKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQ  256 (279)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence            3444457999999999999999999999999999999999888777664433

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.52  E-value=0.0014  Score=63.37  Aligned_cols=65  Identities=25%  Similarity=0.289  Sum_probs=47.8

Q ss_pred             HHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          232 DDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR  303 (318)
Q Consensus       232 e~KR~RR-~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr  303 (318)
                      ..|+.|| .+.|..+|-|.|+||++..++|+.++..|+.+|.+|+.++..|       +.|-+.||+=+.+..
T Consensus       224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~l-------erEI~ylKqli~e~~  289 (294)
T KOG4571|consen  224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASEL-------EREIRYLKQLILEVY  289 (294)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            3444444 4566667999999999999999999999999999998888764       444444555444433

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.29  E-value=0.0024  Score=55.53  Aligned_cols=66  Identities=23%  Similarity=0.336  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      -.|..||-|+||=.|+-+|-|+-.+-.+||.+...|..+...              |..||..++.++..|+.|+..|-.
T Consensus        51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~--------------L~~e~s~~~~E~da~k~k~e~l~~  116 (135)
T KOG4196|consen   51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEK--------------LKEENSRLRRELDAYKSKYEALQN  116 (135)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            468888999999999999999988777776665554444433              344455555566666666655544

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.93  E-value=0.0091  Score=46.87  Aligned_cols=63  Identities=21%  Similarity=0.157  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN  317 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~  317 (318)
                      .-++.||.+|..+-..+..|..++..|+.+...+..+|..|+.+...|+..-....+.|..+.
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL   66 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788888888888888888888888888777777777777777777777777777666554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=96.82  E-value=0.0054  Score=58.56  Aligned_cols=49  Identities=20%  Similarity=0.401  Sum_probs=40.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  286 (318)
Q Consensus       238 R~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~  286 (318)
                      |.-+|=+++||||.+.|....++..+|..|+.||..|+.++..|++++.
T Consensus       198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~  246 (269)
T KOG3119|consen  198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELA  246 (269)
T ss_pred             HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3346889999999999999999999999999999998888877544443

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=96.38  E-value=0.0068  Score=63.79  Aligned_cols=65  Identities=23%  Similarity=0.340  Sum_probs=51.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      =.||.=|||.+|+++|+||..-|..||..|..|+.|-.+|.++-..       +...=.+++.++..|-..|
T Consensus       491 DIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~-------~d~~L~~~kqqls~L~~~V  555 (604)
T KOG3863|consen  491 DIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDE-------LDSTLGVMKQQLSELYQEV  555 (604)
T ss_pred             ccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999888766543       4444455666666665543

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.04  E-value=0.08  Score=41.06  Aligned_cols=53  Identities=17%  Similarity=0.049  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      +..|+.+|..|-.....|+.++..|.++...+..|++.|..+++.=|.||..+
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam   54 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM   54 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777776666666666666666666667777777766666666665443

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=95.96  E-value=0.051  Score=45.62  Aligned_cols=53  Identities=26%  Similarity=0.340  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      +|=.++..|+.....|..++..|+.++..+..||..|+.+...||.+|...+.
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34455556666666666666666666777777777777777777777777654

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.77  E-value=0.16  Score=53.39  Aligned_cols=84  Identities=15%  Similarity=0.190  Sum_probs=71.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      |....+++...........-+.++..|+.++...+.++..|..+...+......+..|+..|+.+...++.+|..+|+.|
T Consensus       150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi  229 (546)
T PF07888_consen  150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI  229 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445666667777777777788888888888889999999999999999999999999999999999999999999988


Q ss_pred             hhcc
Q 021065          314 LGEN  317 (318)
Q Consensus       314 ~~~~  317 (318)
                      +.++
T Consensus       230 ~~l~  233 (546)
T PF07888_consen  230 KTLT  233 (546)
T ss_pred             HHHH
Confidence            8764

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.71  E-value=0.085  Score=47.45  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=47.3

Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          256 HLNELET---QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       256 ~l~eLE~---qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      +|..|..   ....++.||..|..++..|++++..|..||..|..++..+.....++=.++.|
T Consensus        88 fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R  150 (161)
T TIGR02894        88 FLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR  150 (161)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443   46778888999999999999999999999999988888888888777777655

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=95.64  E-value=0.12  Score=40.18  Aligned_cols=57  Identities=14%  Similarity=0.158  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      +.++.|-.....|+.||..|+.++..+..+-..+...|..=+.+|+.|=.+|+.+|.
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq   63 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            467888899999999999999999999999999999999999999999999998874

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=95.64  E-value=0.038  Score=39.79  Aligned_cols=42  Identities=26%  Similarity=0.436  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY  307 (318)
Q Consensus       266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~  307 (318)
                      +|+.+...|+.....|...|..|..||..|++++..|..++.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            567777788888888888888888888888888888887764

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.44  E-value=0.12  Score=40.93  Aligned_cols=54  Identities=15%  Similarity=0.274  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      -+.=|.-+|+.|+.+|..|..+...+++....|..+|..|+.+-...+.+|+.+
T Consensus        19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL   72 (79)
T COG3074          19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355677788999999999999999999999999999999999988888777654

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=95.42  E-value=0.14  Score=40.40  Aligned_cols=59  Identities=24%  Similarity=0.269  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD--------ESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~--------~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      |.+.+.+++.|+.||=.|+-++-.|.+++.        .+..+|..|+.++..|+..|......|..
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~   68 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKE   68 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999988888866        45788888888888888888888877764

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=95.39  E-value=0.11  Score=43.95  Aligned_cols=50  Identities=22%  Similarity=0.284  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      |=.++..|+.....|..++..|++.+..+..||..|+.+...||.+|..+
T Consensus         6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445555555555555555555555566666666666666666666654

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.35  E-value=0.18  Score=46.69  Aligned_cols=17  Identities=0%  Similarity=-0.017  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 021065          287 ESAVNNRILKADIETLR  303 (318)
Q Consensus       287 ~l~~EN~~Lrael~~Lr  303 (318)
                      .+..+|+.|++++..++
T Consensus       150 ~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884        150 VAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.33  E-value=0.22  Score=39.16  Aligned_cols=55  Identities=15%  Similarity=0.244  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      .+..+-..+..|+.||..|+.++..|......|..+|..|+.+-.....+|..+=
T Consensus        12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL   66 (72)
T PF06005_consen   12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666778888888888888888888888899999999999888888887653

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=95.16  E-value=0.11  Score=43.52  Aligned_cols=50  Identities=30%  Similarity=0.414  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      ..+..||.++..|-.+...|+.++..|.++...|..||..||..+..+..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56889999999999999999999999999999999999999999998876

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=95.04  E-value=0.13  Score=43.60  Aligned_cols=50  Identities=28%  Similarity=0.383  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      ..+..||.++..|-.+...|+..+..|.++...|..||..||..+..+..
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46889999999999999999999999999999999999999999998843

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.02  E-value=0.27  Score=38.27  Aligned_cols=56  Identities=20%  Similarity=0.271  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      +.+++.+..++...+.+|..|..+-.....++..+-.+|..|+.+++.|+..+...
T Consensus        11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen   11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35678888888888888888888888888888888889999999999998886654

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=94.63  E-value=0.14  Score=43.56  Aligned_cols=49  Identities=24%  Similarity=0.276  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM  308 (318)
Q Consensus       260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~  308 (318)
                      +=.+|..|+...-.|.+++..|++++..+..||..|+-+...||.+|..
T Consensus         6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            4456777777777788888888888889999999999999999999887

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.56  E-value=0.74  Score=42.71  Aligned_cols=37  Identities=11%  Similarity=0.085  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      |..++....+++..|..+|..|+.++..++.++..++
T Consensus       123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~  159 (206)
T PRK10884        123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN  159 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444445555555555544444444433

>PRK11637 AmiB activator; Provisional

Probab=94.52  E-value=0.75  Score=46.11  Aligned_cols=65  Identities=15%  Similarity=0.130  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      ...+..+.+++.++..|..+...+..++..+++++..+..+=..|..++..++.+|..+++.+++
T Consensus        64 ~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~  128 (428)
T PRK11637         64 RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA  128 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555666666666666666666666666666666666666677777777776666666543

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=94.49  E-value=0.39  Score=38.66  Aligned_cols=48  Identities=17%  Similarity=0.276  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM  308 (318)
Q Consensus       261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~  308 (318)
                      .-+|+.|+.+|..|..++..+......|..+|..||.+-.....+|..
T Consensus        24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422         24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444455666666666666665555543

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=94.33  E-value=0.11  Score=53.68  Aligned_cols=51  Identities=20%  Similarity=0.270  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  305 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k  305 (318)
                      ..+.+||.+++.|+.|.+.|.+++..+++++..++.||..|+.+++.+..+
T Consensus        76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~  126 (475)
T PRK13729         76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN  126 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            467899999999999999999999999999999999999999999665543

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.28  E-value=0.66  Score=40.02  Aligned_cols=78  Identities=17%  Similarity=0.275  Sum_probs=42.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      ....|=...|+..-....++...+..|+..+..|+.++..+..++..+..+...+..+++.+...+..++..+..+..
T Consensus        45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~  122 (151)
T PF11559_consen   45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN  122 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455666666666666666666666666666666666666555555555555555544444444444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.03  E-value=1.9  Score=37.23  Aligned_cols=82  Identities=18%  Similarity=0.247  Sum_probs=39.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       235 R~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      -.-.+|.-|.--...|.-=...+..|+..+..|...+..|..++..+.+++..+..+-+.|+.++..+..+++...+-|+
T Consensus        39 ~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~  118 (151)
T PF11559_consen   39 CIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ  118 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455554433333333333333344444444444444444444444444555555555555555555555555555555


Q ss_pred             hc
Q 021065          315 GE  316 (318)
Q Consensus       315 ~~  316 (318)
                      ++
T Consensus       119 kl  120 (151)
T PF11559_consen  119 KL  120 (151)
T ss_pred             HH
Confidence            43

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.03  E-value=0.38  Score=43.45  Aligned_cols=72  Identities=15%  Similarity=0.129  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  302 (318)
Q Consensus       231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L  302 (318)
                      ...++.+.+...+..-+.-.......+.+++.-+..|..|...|.-++..+..++..+..||+.|-.+.+..
T Consensus       113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~  184 (194)
T PF08614_consen  113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR  184 (194)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555556565555555566666777777777778888888888888888888888888888886665443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=93.78  E-value=0.52  Score=37.96  Aligned_cols=63  Identities=14%  Similarity=0.154  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN-------NRILKADIETLRAKLYMFIEIFLGENG  318 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E-------N~~Lrael~~Lr~kl~~~e~~v~~~~~  318 (318)
                      -++.||.+|.+.-..+.-|.-++.+|+.+...+..+       ...|..+...|+..-..-.+.+..+.|
T Consensus         5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG   74 (79)
T PRK15422          5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788887765555555555555555555555555       455888888888888888888877765

>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids []

Probab=93.41  E-value=1.2  Score=34.91  Aligned_cols=60  Identities=12%  Similarity=0.224  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN  317 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~  317 (318)
                      ..||.-=......-+.....+..|+..+.....+|..|++++..|..+|..+.+-|.|++
T Consensus        10 ~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs   69 (70)
T PF04899_consen   10 SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS   69 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334443444555566677788888888888999999999999999999999999998875

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.24  E-value=2.1  Score=38.61  Aligned_cols=60  Identities=27%  Similarity=0.403  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      .+...+.++..|+.++..|..++..+...+.....-|..|+.++..|+-.+.++|+-+.+
T Consensus       110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~  169 (194)
T PF08614_consen  110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRK  169 (194)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555555555555555555666666665555555555443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK11637 AmiB activator; Provisional

Probab=93.10  E-value=1.4  Score=44.14  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM  308 (318)
Q Consensus       248 RSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~  308 (318)
                      .....-...+..|+.++..++.+...+..++..+..++..+..+=..|+.++..++..+..
T Consensus        68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~  128 (428)
T PRK11637         68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA  128 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444556666666666666666666666666666666666666666665555555543

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.88  E-value=3.6  Score=36.38  Aligned_cols=73  Identities=19%  Similarity=0.252  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       244 ESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      ...+.-++.++..+..++..+..+..+-..|...+.+.+.+...+..+-..++.....|..++...+++.+++
T Consensus       119 ~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  191 (191)
T PF04156_consen  119 QELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQL  191 (191)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3333444555566666666666666666666666666667777777777777777777777777777776653

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.53  E-value=1.6  Score=40.88  Aligned_cols=42  Identities=14%  Similarity=0.156  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL  295 (318)
Q Consensus       254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L  295 (318)
                      ++.+..|+.+++.|+..|..|...+...++++..+..+-..+
T Consensus        55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~   96 (251)
T PF11932_consen   55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI   96 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555555555555444444444444444433333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.49  E-value=1.1  Score=43.31  Aligned_cols=64  Identities=22%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      ..+...+.+++..+..++.+...|..++..+..+...+..++..+++++..|..+|..+++.|.
T Consensus        34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~   97 (265)
T COG3883          34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV   97 (265)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677888888888888888888888888888888888888888888888888887777664

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=92.42  E-value=0.55  Score=33.78  Aligned_cols=42  Identities=24%  Similarity=0.293  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      +|......|+..|..|..+|..|+.+...|++.|..+...+.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            466778899999999999999999999999999998877654

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=92.25  E-value=3.1  Score=39.68  Aligned_cols=82  Identities=20%  Similarity=0.274  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q 021065          233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK---------YDESAVNNRILKADIETLR  303 (318)
Q Consensus       233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk---------~~~l~~EN~~Lrael~~Lr  303 (318)
                      .+-.+++..-.+.+++.=.-++..+++|+.+|..++.+.+.++.++..+..+         |..|..|-..++.+...|+
T Consensus        30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le  109 (239)
T COG1579          30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLE  109 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666677777777778888999999999999999888888877655         3444444445555555555


Q ss_pred             HHHHHHHHhhh
Q 021065          304 AKLYMFIEIFL  314 (318)
Q Consensus       304 ~kl~~~e~~v~  314 (318)
                      ..|..+.+.+.
T Consensus       110 ~el~~l~~~~~  120 (239)
T COG1579         110 DELAELMEEIE  120 (239)
T ss_pred             HHHHHHHHHHH
Confidence            55555544443

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=92.20  E-value=0.49  Score=39.38  Aligned_cols=42  Identities=17%  Similarity=0.085  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      |..++..+++++..+..+|..|+.++..|+.--..+|+..+.
T Consensus        32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~   73 (105)
T PRK00888         32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN   73 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence            334444444444444555555555555555544455555443

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=92.12  E-value=0.71  Score=47.81  Aligned_cols=59  Identities=20%  Similarity=0.304  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDES-AVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l-~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      .+..|+.+.+.|+.||+.|+++...+.++++.. ..+...|..+.+.|...+..+...+.
T Consensus        74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~  133 (472)
T TIGR03752        74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLID  133 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788888888888888888888887776644 35555666666665555555544443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=91.93  E-value=0.86  Score=45.62  Aligned_cols=63  Identities=17%  Similarity=0.202  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       249 SR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      -=.|-+.+...||.-+.+++.||+.|.-+|..+.+++.+.+.|+..|..++.+-++....+-+
T Consensus       121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~  183 (401)
T PF06785_consen  121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND  183 (401)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667888899999999999999999999999999999999999997777766665555443

>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long)

Probab=91.92  E-value=0.76  Score=42.77  Aligned_cols=47  Identities=19%  Similarity=0.237  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065          268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG  318 (318)
Q Consensus       268 ~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~  318 (318)
                      -.||..|..++..+..++..|..||..|+.    |...++.+-++|.+++|
T Consensus       124 L~ENe~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~~  170 (200)
T PF07412_consen  124 LEENEKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLTG  170 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence            357888999999888888889999988876    56667777777777775

Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=91.82  E-value=1.8  Score=41.64  Aligned_cols=76  Identities=17%  Similarity=0.243  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHH-----hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          231 VDDKRARRMLS-----NRESARRSRRRKQ-AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       231 ~e~KR~RR~ls-----NRESArRSR~RKk-~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      .+.||.|-.+.     .|.-|   |.-+. ..+.+|+.+-..|+.||..|+.....|--+.+++..+=..|+++++.|..
T Consensus        70 ~~RrKLKNRVAAQtaRDrKKa---Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~  146 (292)
T KOG4005|consen   70 VQRRKLKNRVAAQTARDRKKA---RMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ  146 (292)
T ss_pred             HHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence            45666664332     33333   33333 34789999999999999999999999999999999999999999999988


Q ss_pred             HHHHH
Q 021065          305 KLYMF  309 (318)
Q Consensus       305 kl~~~  309 (318)
                      ...+-
T Consensus       147 ~~~~~  151 (292)
T KOG4005|consen  147 QQQHN  151 (292)
T ss_pred             HHHHh
Confidence            77654

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=91.77  E-value=4.2  Score=37.33  Aligned_cols=84  Identities=15%  Similarity=0.129  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 021065          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL-------RAEHSSLLKGLTDVNQKYD-------ESAVNNRILKA  297 (318)
Q Consensus       232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L-------~~EN~~L~~~l~~L~qk~~-------~l~~EN~~Lra  297 (318)
                      +.+-.+..|.+..+-+..+.+.+.+...|+.++..-       +.+...|..++..|+.+.+       ....|...|+.
T Consensus        87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks  166 (190)
T PF05266_consen   87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS  166 (190)
T ss_pred             ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666667777777777777777777776644       4444444455555544433       33344555555


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 021065          298 DIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       298 el~~Lr~kl~~~e~~v~~  315 (318)
                      .+..|...+..+|-.++.
T Consensus       167 ~~~~l~~~~~~~e~~F~~  184 (190)
T PF05266_consen  167 EAEALKEEIENAELEFQS  184 (190)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555556655555554443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.63  E-value=1  Score=39.65  Aligned_cols=49  Identities=27%  Similarity=0.345  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGL--TDVNQKYDESAVNNRILKADIETLR  303 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l--~~L~qk~~~l~~EN~~Lrael~~Lr  303 (318)
                      ..+.+|+.++..|+.|...|...+  .+|..++..+..|+..|..++..|+
T Consensus        86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555444  2334444444444444444444444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=91.58  E-value=5.8  Score=32.21  Aligned_cols=75  Identities=19%  Similarity=0.246  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      -.+|..+.+.+=+++=..|.-+.....+|+.++..|....+.|-.+|.....++..++.-|+.+...+...-..|
T Consensus         9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I   83 (89)
T PF13747_consen    9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI   83 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888888888888888888789999999999999999999998888888887777777666555444433

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.37  E-value=1.4  Score=38.79  Aligned_cols=56  Identities=25%  Similarity=0.306  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY--DESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~--~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      .+.+|..++..|+.++..|..++..|....  ..+..+...|+.++..|..+|..+..
T Consensus        80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            367777777777777777777777776653  55666666667777777777666654

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=91.32  E-value=3.1  Score=32.66  Aligned_cols=63  Identities=19%  Similarity=0.225  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      |.+.+..|-.+-..|....-.+...+..|+.+...++.+...|+.++..+...+..+++..++
T Consensus        10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~   72 (74)
T PF12329_consen   10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR   72 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            455666666666666666666666666677777777777777777777777777777666554

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=91.19  E-value=7.1  Score=34.41  Aligned_cols=66  Identities=17%  Similarity=0.184  Sum_probs=32.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       239 ~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      ...|++.+-+--.-+++.+..|+.++..+..+...|..+|..       +..|+..|...+...+.+|..||.
T Consensus        36 ~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~-------l~sEk~~L~k~lq~~q~kv~eLE~  101 (140)
T PF10473_consen   36 SQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDT-------LRSEKENLDKELQKKQEKVSELES  101 (140)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555444555555555555555555555444444444       444444444444444444444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.97  E-value=2.4  Score=36.33  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 021065          274 LLKGLTDVNQKYDES-------AVNNRILKADIETLRAKL  306 (318)
Q Consensus       274 L~~~l~~L~qk~~~l-------~~EN~~Lrael~~Lr~kl  306 (318)
                      |..++.+|+.+|..+       .-++.+|+.++..|..-+
T Consensus        73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my  112 (120)
T PF12325_consen   73 LEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY  112 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            344444444444433       345555555555555433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.95  E-value=2.5  Score=33.68  Aligned_cols=62  Identities=19%  Similarity=0.230  Sum_probs=36.6

Q ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065          257 LNELETQAGQ-------LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG  318 (318)
Q Consensus       257 l~eLE~qV~~-------L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~  318 (318)
                      ++.||.+|.+       |+.|..+|+.++..|.++.+.+...+..|..+.+.|...-..-.+.++.+.|
T Consensus         6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG   74 (79)
T COG3074           6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666553       5555555666666565556665666666666666666665555566655544

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=90.90  E-value=3.7  Score=34.87  Aligned_cols=76  Identities=18%  Similarity=0.189  Sum_probs=48.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      -+..-+..-.|..+-|+..=.+.-++|+..+..|+.+|..+.+++.+|+.++..+...=..-|..-..|+.++...
T Consensus        16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~   91 (107)
T PF09304_consen   16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKA   91 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566667777777776666667788888888888887777777777777766544433333333444444433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK09039 hypothetical protein; Validated

Probab=90.84  E-value=3.1  Score=41.19  Aligned_cols=48  Identities=23%  Similarity=0.277  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       262 ~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      .+|..|+.+...|+.++..|...+..++.+.+..+.+++.|..+|..+
T Consensus       137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555555555555566666665555544

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.83  E-value=2.5  Score=40.52  Aligned_cols=53  Identities=23%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      ++++..+...|..+|..|..++..++.++..+..||..|......|-.++..+
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L  196 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL  196 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence            44444445555555555555555566666666666666655444443333333

>PRK04406 hypothetical protein; Provisional

Probab=90.80  E-value=2.2  Score=33.73  Aligned_cols=53  Identities=9%  Similarity=0.149  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      .|+.++..|+...+-+-..+..|+.-+.....+-..|+.++..|..+|+.++.
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~   60 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS   60 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45555555555555555555555555555556667777778888777776653

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=90.78  E-value=1.4  Score=35.40  Aligned_cols=47  Identities=19%  Similarity=0.251  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      ++|..++..|+.....|..++..++.++..|..||..|..=|..|-.
T Consensus        19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~   65 (80)
T PF10224_consen   19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS   65 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777788888888888888888888777777743

The exact function is unknown.

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=90.76  E-value=0.45  Score=43.03  Aligned_cols=46  Identities=20%  Similarity=0.291  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      |+++|.+.++.-.+|.-|..+|.    +-..|..++.+||-++.+|+..+
T Consensus         2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl   47 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL   47 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999998883    45667777777777777777777

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.69  E-value=1.7  Score=41.59  Aligned_cols=57  Identities=23%  Similarity=0.351  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      |..++++..+++.+..||..|..+++.+..+|..+.-.-..|+.+...|..+++.+.
T Consensus       134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~  190 (290)
T COG4026         134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP  190 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            344566667777777777777777777666666555544444444444444444444

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=90.64  E-value=7.7  Score=35.68  Aligned_cols=79  Identities=27%  Similarity=0.360  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH
Q 021065          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES---------------AVNNRILK  296 (318)
Q Consensus       232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l---------------~~EN~~Lr  296 (318)
                      +....++.+.+-+.-+.+=..-+.++..++.++..|+-++..|..++..+.++...|               ...|-.|.
T Consensus        70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLE  149 (201)
T PF13851_consen   70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLE  149 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777777777777777777777788888888877777777777766665544               24455555


Q ss_pred             HHHHHHHHHHHHHH
Q 021065          297 ADIETLRAKLYMFI  310 (318)
Q Consensus       297 ael~~Lr~kl~~~e  310 (318)
                      ..+..|...+..-+
T Consensus       150 kKl~~l~~~lE~ke  163 (201)
T PF13851_consen  150 KKLQALSEQLEKKE  163 (201)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555544433

>PRK02119 hypothetical protein; Provisional

Probab=90.62  E-value=2.2  Score=33.47  Aligned_cols=49  Identities=14%  Similarity=0.127  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      +++.+||.++..++.-...|...+..       ...+-..|+.++..|..+|+.++
T Consensus         9 ~Ri~~LE~rla~QE~tie~LN~~v~~-------Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          9 NRIAELEMKIAFQENLLEELNQALIE-------QQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhc
Confidence            44555555555555555555555444       44444556666666666666554

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=90.58  E-value=1.6  Score=42.44  Aligned_cols=55  Identities=20%  Similarity=0.162  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQK-----------YDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk-----------~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      |..||.+...|+.+|+.|..++..++.+           ...|+-+|..+++..+.|+.+|..||-
T Consensus        54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ  119 (333)
T KOG1853|consen   54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ  119 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555544433           346677888888888888888887774

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=90.45  E-value=1.6  Score=33.67  Aligned_cols=49  Identities=18%  Similarity=0.249  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR  303 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr  303 (318)
                      ++|.+||.++..++.-...|...+....+++..|..+.+.|..++..++
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5677888888887777777777777666666655555555444444443

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=90.23  E-value=1.2  Score=37.88  Aligned_cols=47  Identities=23%  Similarity=0.310  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET  301 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~  301 (318)
                      ..+.+||.++..|-.+...|++.+..+.++...|..||..||..+..
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            45789999999999999999999999999999999999999999887

>PRK04325 hypothetical protein; Provisional

Probab=90.18  E-value=2.2  Score=33.47  Aligned_cols=49  Identities=16%  Similarity=0.104  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      ++.+||.++..++.-...|...+..       ...+-..|+.++..|..||+.++.
T Consensus        10 Ri~~LE~klAfQE~tIe~LN~vv~~-------Qq~~I~~L~~ql~~L~~rl~~~~~   58 (74)
T PRK04325         10 RITELEIQLAFQEDLIDGLNATVAR-------QQQTLDLLQAQLRLLYQQMRDANP   58 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3666666666666555555555544       444445666777777777766653

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=89.97  E-value=5.4  Score=42.72  Aligned_cols=74  Identities=22%  Similarity=0.315  Sum_probs=46.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHH---
Q 021065          241 SNRESARRSRRRKQAHLNELETQAGQLR------------------------AEHSSLLKGLTDVNQKYDESAVNNR---  293 (318)
Q Consensus       241 sNRESArRSR~RKk~~l~eLE~qV~~L~------------------------~EN~~L~~~l~~L~qk~~~l~~EN~---  293 (318)
                      .|.+.--+--..+..+|.+||.++..++                        ..|..|+.+|..|...|..+.++|-   
T Consensus       108 ~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt  187 (617)
T PF15070_consen  108 ENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELT  187 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence            3444333333366677777776665444                        3577888889999999998888884   


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHhhh
Q 021065          294 -----------ILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       294 -----------~Lrael~~Lr~kl~~~e~~v~  314 (318)
                                 .|..++..|..++..+.+.|+
T Consensus       188 ~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le  219 (617)
T PF15070_consen  188 SALQSEQHVKKELQKKLGELQEKLHNLKEKLE  219 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       444555555555555555443

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=89.88  E-value=9.5  Score=31.07  Aligned_cols=74  Identities=14%  Similarity=0.063  Sum_probs=60.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       237 RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      -++...++.....=..|+..+..||.++..|..|...-..+.-.+......+..||+.|+..+..=+.-+..+.
T Consensus         6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~   79 (96)
T PF08647_consen    6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK   79 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            45666677777777889999999999999999999999999999999999999999999887765444444333

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=89.84  E-value=2.2  Score=32.88  Aligned_cols=53  Identities=17%  Similarity=0.194  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      .|+.++..|+...+-+-..+..|+.-+.....+-..|+.++..|..||+.+++
T Consensus         1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   53 (69)
T PF04102_consen    1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED   53 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            37899999999999999999999999999999999999999999999988773

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.82  E-value=6.5  Score=36.75  Aligned_cols=38  Identities=18%  Similarity=0.116  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE  300 (318)
Q Consensus       263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~  300 (318)
                      ++..|+.|...|...+..+...+.....+-..|..++.
T Consensus        57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~   94 (251)
T PF11932_consen   57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE   94 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=89.80  E-value=2.8  Score=37.84  Aligned_cols=55  Identities=15%  Similarity=0.215  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI  312 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~  312 (318)
                      ..|+.+...|+.++..|..++..|..++..|..++..++.+..+|-.-+..+..+
T Consensus       100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl  154 (161)
T TIGR02894       100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL  154 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555555555555555555555555555555555555544444443

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.70  E-value=2.9  Score=40.78  Aligned_cols=59  Identities=17%  Similarity=0.181  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      ..|..|..++..+..+...++.++..++.++..+..+-..+..+...|...+..++.++
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~  267 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR  267 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555666666666666666666666666666666666666666666666666554

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=89.68  E-value=5.2  Score=43.39  Aligned_cols=54  Identities=15%  Similarity=0.184  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh
Q 021065          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN--------------RILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN--------------~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      +..+..+|+.|...|+.++.....++..++.|.              ..|...+..|+.|-..||+-+
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL  610 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL  610 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            444455555555555555554444444444444              344444556666666666544

; GO: 0016021 integral to membrane

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=89.64  E-value=3.4  Score=36.11  Aligned_cols=16  Identities=19%  Similarity=0.366  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHhh
Q 021065          298 DIETLRAKLYMFIEIF  313 (318)
Q Consensus       298 el~~Lr~kl~~~e~~v  313 (318)
                      .++.|..||.++|+-+
T Consensus        74 ~~E~l~rriq~LEeel   89 (143)
T PF12718_consen   74 NAEQLNRRIQLLEEEL   89 (143)
T ss_pred             hHHHHHhhHHHHHHHH
Confidence            3334555555555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=89.53  E-value=3  Score=44.13  Aligned_cols=66  Identities=21%  Similarity=0.237  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHH
Q 021065          248 RSRRRKQAHLNELE-------TQAGQLRAEHSSLLKGLTDVNQK-----------------------------YDESAVN  291 (318)
Q Consensus       248 RSR~RKk~~l~eLE-------~qV~~L~~EN~~L~~~l~~L~qk-----------------------------~~~l~~E  291 (318)
                      .+|.|-|++|.+|-       .+|..|+.||..|...+..|+..                             ...++.+
T Consensus        35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~e  114 (546)
T KOG0977|consen   35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIE  114 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666665       45778999999998888877633                             3355566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 021065          292 NRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       292 N~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      -..|+.++.+|+.++..++..+
T Consensus       115 i~kl~~e~~elr~~~~~~~k~~  136 (546)
T KOG0977|consen  115 ITKLREELKELRKKLEKAEKER  136 (546)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHH
Confidence            6667777777777766665444

>TIGR00219 mreC rod shape-determining protein MreC

Probab=89.33  E-value=0.83  Score=43.97  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 021065          263 QAGQLRAEHSSLLKGLTDVNQKYD----ESAVNNRILKAD  298 (318)
Q Consensus       263 qV~~L~~EN~~L~~~l~~L~qk~~----~l~~EN~~Lrae  298 (318)
                      .+.+|+.||.+|++++..+++++.    .+..||+.||+-
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~L  106 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLREL  106 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777777777666644433    356666666653

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=89.21  E-value=3.1  Score=33.50  Aligned_cols=58  Identities=19%  Similarity=0.274  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          253 KQAHLNELETQ-AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       253 Kk~~l~eLE~q-V~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      ....++.++.+ ...|..+...|...|..|..++.....||..|+.+-+.|+..|..+=
T Consensus         6 ~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm   64 (80)
T PF10224_consen    6 NSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM   64 (80)
T ss_pred             chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555543 67888888889999999999999999999999999999998887663

The exact function is unknown.

>PRK02793 phi X174 lysis protein; Provisional

Probab=89.20  E-value=3.1  Score=32.52  Aligned_cols=50  Identities=22%  Similarity=0.169  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      ++|.+||.++..++.-...|...+..       ...+-..|+.++..|..+|+.+++
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~-------Qq~~I~~L~~~l~~L~~rl~~~~~   57 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVTA-------HEMEMAKLRDHLRLLTEKLKASQP   57 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45666666666666555555555554       444445666677777777776654

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=89.17  E-value=2.4  Score=40.68  Aligned_cols=35  Identities=20%  Similarity=0.420  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      .++.++...|+.||..||.+++.|+..+..+.+++
T Consensus       218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~  252 (269)
T KOG3119|consen  218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLF  252 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555666666666666665555555544

>PRK00846 hypothetical protein; Provisional

Probab=89.03  E-value=3.5  Score=33.01  Aligned_cols=53  Identities=17%  Similarity=0.120  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      +++.++..|+...+-.-..+..|++.+.....+...|+.++..|..||+.++.
T Consensus        10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~   62 (77)
T PRK00846         10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS   62 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34455555555555555555555555556666677788888888888887763

>PRK00295 hypothetical protein; Provisional

Probab=88.61  E-value=4.1  Score=31.46  Aligned_cols=50  Identities=14%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      +++.+||.++..++.-...|...+..-.+++       ..|+.++..|..+|+.+++
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I-------~~L~~ql~~L~~rl~~~~~   54 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVEQQRVI-------ERLQLQMAALIKRQEEMVG   54 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhc
Confidence            3477888888777777766666666544444       5566667777777766653

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=88.57  E-value=3.2  Score=38.49  Aligned_cols=53  Identities=17%  Similarity=0.244  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      .+|-..|+.|+.-|..|..++..|...+..++-.|..|..++..|+..++.+.
T Consensus         4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q   56 (193)
T PF14662_consen    4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ   56 (193)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=88.54  E-value=2.8  Score=32.65  Aligned_cols=49  Identities=27%  Similarity=0.340  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      ++.-.+.....|..|+.....++..+-..+..|..||..|+.++..++.
T Consensus        20 k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~   68 (69)
T PF14197_consen   20 KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA   68 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445556677788888888888888888888888888888888777764

>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer)

Probab=88.53  E-value=3.4  Score=32.23  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      .|..+++.|+..|..|...++..+++...+......-.+....||.+++..++.+.
T Consensus         2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e   57 (67)
T PF10506_consen    2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKE   57 (67)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            47788999999999999999999999999999999999999999998887776653

MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=88.34  E-value=4.5  Score=33.59  Aligned_cols=57  Identities=14%  Similarity=0.220  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          254 QAHLNELETQAGQLRAEHSSLLKGLTDV--NQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L--~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      +..++.|+.++......-+.|..++..|  ...++.|..+=..++-++.+|+++|+-++
T Consensus        34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~   92 (106)
T PF10805_consen   34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS   92 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3444444444444444444444444444  34444444444444444444444444433

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=88.20  E-value=1.6  Score=43.64  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK  296 (318)
Q Consensus       263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lr  296 (318)
                      |...|+.||..|++++++|+.+...|  ||..||
T Consensus        33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~   64 (420)
T PF07407_consen   33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLR   64 (420)
T ss_pred             hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence            45567777777777777777777777  555665

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=88.14  E-value=6.5  Score=36.51  Aligned_cols=42  Identities=19%  Similarity=0.300  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI  299 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael  299 (318)
                      ..|..++..|+.+|-.|..+...+..++..|..+|..|+.++
T Consensus        98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            456667777777777777777777777777777777666666

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=88.06  E-value=5.5  Score=34.15  Aligned_cols=16  Identities=31%  Similarity=0.607  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHhh
Q 021065          298 DIETLRAKLYMFIEIF  313 (318)
Q Consensus       298 el~~Lr~kl~~~e~~v  313 (318)
                      ++++|+.-|..+.+|.
T Consensus        97 ~veEL~~Dv~DlK~my  112 (120)
T PF12325_consen   97 EVEELRADVQDLKEMY  112 (120)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=88.06  E-value=1.9  Score=32.60  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTD  280 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~  280 (318)
                      .+.+|+.+++.|+.+|..|..++..
T Consensus        25 ei~~l~~~i~~l~~e~~~L~~ei~~   49 (80)
T PF04977_consen   25 EIAELQKEIEELKKENEELKEEIER   49 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444433

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=87.92  E-value=16  Score=33.92  Aligned_cols=84  Identities=14%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      .|.+|. ++..-..-..|.-..-++++..|...+...+..-+....+-..++.+...|..|.+.+++++..|+..|..|+
T Consensus       103 ~eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq  181 (192)
T PF11180_consen  103 VEIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ  181 (192)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344443 4555566666777777888899999999888888888888888999999999999999999999999999998


Q ss_pred             Hhhhh
Q 021065          311 EIFLG  315 (318)
Q Consensus       311 ~~v~~  315 (318)
                      .-...
T Consensus       182 ~q~~~  186 (192)
T PF11180_consen  182 RQANE  186 (192)
T ss_pred             HHhcC
Confidence            76543

>smart00340 HALZ homeobox associated leucin zipper

Probab=87.90  E-value=1.1  Score=32.35  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          279 TDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       279 ~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      +.|++.+..|..||+.|+.++++||+
T Consensus         8 e~LKrcce~LteeNrRL~ke~~eLra   33 (44)
T smart00340        8 ELLKRCCESLTEENRRLQKEVQELRA   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677788899999999999999985

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=87.77  E-value=3.2  Score=41.03  Aligned_cols=57  Identities=19%  Similarity=0.203  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      ..|...+..|+.+|..|+.++...+.++..|..+|+.||.....+.++..+=|+-|.
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is   79 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS   79 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777888888888888888888888888888888888888888888777776553

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=87.65  E-value=12  Score=36.50  Aligned_cols=57  Identities=21%  Similarity=0.340  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      +..++.++.++.+.+.+.+.+..++.+...++..+..+-..|...+..+..||..+.
T Consensus       206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~  262 (269)
T PF05278_consen  206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH  262 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            566777777777788888888888888888888888877777777777777776653

>smart00338 BRLZ basic region leucin zipper

Probab=87.65  E-value=2.3  Score=31.79  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          277 GLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       277 ~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      .+..|..++..|..+|..|+.++..|+..+..+.+.+
T Consensus        27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338       27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555566666677777777777777777777666543

>PHA02562 46 endonuclease subunit; Provisional

Probab=87.62  E-value=9.2  Score=38.97  Aligned_cols=52  Identities=15%  Similarity=0.164  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      ..+.+++.++..++.....+..++..++.++..+..++..+..++..|..++
T Consensus       337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l  388 (562)
T PHA02562        337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDEL  388 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Confidence            3334444443333333333333333333334444333333333333333333

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=87.50  E-value=11  Score=30.65  Aligned_cols=54  Identities=24%  Similarity=0.301  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          262 TQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       262 ~qV~~L~~EN~~L~~~l~~L~q---k~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      .+++.|+.+-..+.+++..+..   ....+..+-..|+.++..|..++..+++.+..
T Consensus        43 ~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~   99 (108)
T PF02403_consen   43 QELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE   99 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444433   24455556666666777777776666665543

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=87.38  E-value=5.2  Score=36.50  Aligned_cols=60  Identities=18%  Similarity=0.163  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      .+|++=..+...|..-|.-|+.+++........|..++..|+.+...|+..|..-|...+
T Consensus        67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~  126 (182)
T PF15035_consen   67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR  126 (182)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555566778888888888888888888888888888888888888877776665443

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=87.36  E-value=2.7  Score=31.38  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065          276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI  312 (318)
Q Consensus       276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~  312 (318)
                      ..+..|..++..|..+|..|+.++..|...+..+...
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e   62 (64)
T PF00170_consen   26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE   62 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444555555556666666666666666666555543

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PRK02119 hypothetical protein; Provisional

Probab=87.23  E-value=4.1  Score=31.95  Aligned_cols=52  Identities=12%  Similarity=0.049  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      +..++.++..|+...+-+...+..       |..--.....++..|+++|+.+-+.++.
T Consensus         4 ~~~~e~Ri~~LE~rla~QE~tie~-------LN~~v~~Qq~~id~L~~ql~~L~~rl~~   55 (73)
T PRK02119          4 QQNLENRIAELEMKIAFQENLLEE-------LNQALIEQQFVIDKMQVQLRYMANKLKD   55 (73)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345666666666555544444433       2222223355667777777777666654

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=87.22  E-value=13  Score=34.03  Aligned_cols=59  Identities=15%  Similarity=0.219  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY  307 (318)
Q Consensus       249 SR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~  307 (318)
                      ...++-.++.+||.++-.|+.+.+.|....+....++..+..+-..|+.++...+.+-.
T Consensus       125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~  183 (190)
T PF05266_consen  125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ  183 (190)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566788999999999999999999999999999999999999999999998876643

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=87.20  E-value=7.4  Score=40.03  Aligned_cols=69  Identities=20%  Similarity=0.233  Sum_probs=35.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  302 (318)
Q Consensus       234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L  302 (318)
                      |+.+-+.++=+.-.++....+.....|+.+++.++.++..|..++......+..+..++..+...+..|
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l  106 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL  106 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            444444444444444444555556667777777766666666666554444444444443333333333

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=87.07  E-value=18  Score=30.80  Aligned_cols=63  Identities=19%  Similarity=0.167  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       248 RSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      -||.-.+..+..|+..++.+...+..|.++-..|+...+.|..+|..+...+..|+++|..+.
T Consensus         9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~   71 (107)
T PF09304_consen    9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR   71 (107)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555666666666666666666666666666666666666666666666666665544

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=86.85  E-value=3.7  Score=40.32  Aligned_cols=62  Identities=26%  Similarity=0.343  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN  317 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~  317 (318)
                      .+...+.++...+.+...|..++..|+.+|.....+...|..++.....||..++.+|..+.
T Consensus       229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~  290 (344)
T PF12777_consen  229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLS  290 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhc
Confidence            45666677777777777888888888888888999999999999999999999999887653

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=86.83  E-value=8.7  Score=30.12  Aligned_cols=61  Identities=23%  Similarity=0.197  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      .|.+=..++.+|..|-..|..+.-.++..+..|...|..+..++..|..++..++.-|..+
T Consensus         6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l   66 (74)
T PF12329_consen    6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL   66 (74)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667888888888888888888888888888888888888888888888877766543

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=86.78  E-value=6.6  Score=34.31  Aligned_cols=61  Identities=23%  Similarity=0.269  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA---VNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~---~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      ..|..|..++..|+.+...|..++..+...+....   ..|..|...|..|...|..++..++.
T Consensus        35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e   98 (143)
T PF12718_consen   35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKE   98 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444443333322   23445555666666555555555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=86.77  E-value=13  Score=38.39  Aligned_cols=18  Identities=33%  Similarity=0.414  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHS  272 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~  272 (318)
                      .+|.+||.+++.++.+..
T Consensus        66 ~~lk~~e~~i~~~~~ql~   83 (420)
T COG4942          66 KQLKSLETEIASLEAQLI   83 (420)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444433333

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.73  E-value=6.3  Score=34.87  Aligned_cols=55  Identities=18%  Similarity=0.277  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      .+.++..++.....+.+++.++...+.....+=..++.++..++.....++++++
T Consensus       128 ~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  182 (191)
T PF04156_consen  128 VEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ  182 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444445555555555555555555544

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=86.37  E-value=16  Score=33.35  Aligned_cols=59  Identities=17%  Similarity=0.238  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN--------NRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~E--------N~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      ..+|+.++..|+.++..|..++..+..++..+...        +.....++..|+.....+.+-+++
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~  188 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45666677777777777777777666666555443        444556666666666666655544

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=86.35  E-value=5.6  Score=38.96  Aligned_cols=62  Identities=15%  Similarity=0.212  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      ..|+.+..++..|+.||..+..+....+..+..+..|+..+..++..|+.++..||.+.+.+
T Consensus       244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaL  305 (309)
T PF09728_consen  244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRAL  305 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44677777888999999999999999999999999999999999999999999999987754

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=86.14  E-value=2.3  Score=31.72  Aligned_cols=50  Identities=24%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      |++..|.+|+.++..=+   ..=...-....+++..+..||+.|++++..++.
T Consensus         1 kw~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~   50 (52)
T PF12808_consen    1 KWLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLRS   50 (52)
T ss_pred             CHHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35667778877765433   111222345667778899999999999988775

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>PRK00736 hypothetical protein; Provisional

Probab=86.04  E-value=6.1  Score=30.54  Aligned_cols=49  Identities=14%  Similarity=0.251  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      +++.+||.++..++.-...|...+..-.+++       ..|+.++..|..|++.++
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLSLE   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence            4578888888888777777766666544444       456666777777766654

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=86.02  E-value=6.4  Score=30.16  Aligned_cols=42  Identities=17%  Similarity=0.336  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM  308 (318)
Q Consensus       260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~  308 (318)
                      +..++...+..|..+.++|.+       ....|+.|..+|..|+.++..
T Consensus        16 ~~eEL~kvk~~n~~~e~kLqe-------aE~rn~eL~~ei~~L~~e~ee   57 (61)
T PF08826_consen   16 IQEELTKVKSANLAFESKLQE-------AEKRNRELEQEIERLKKEMEE   57 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            334445555556555555555       555555555555555555443

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=86.01  E-value=12  Score=36.79  Aligned_cols=85  Identities=16%  Similarity=0.262  Sum_probs=57.9

Q ss_pred             cCCchHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          227 GLDSVDDKRARRMLSNRESARRSRRR--KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       227 ~~d~~e~KR~RR~lsNRESArRSR~R--Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      .+-..++|=.|=|+.|-+   .==.|  =.-+++-|..++..|+.....|.+++.+....+..+......|+.++..|+.
T Consensus        85 ~l~evEekyrkAMv~naQ---LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre  161 (302)
T PF09738_consen   85 SLAEVEEKYRKAMVSNAQ---LDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE  161 (302)
T ss_pred             HHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677888888988832   21111  1234555666677777777777777766666677777777888888888888


Q ss_pred             HHHHHHHhhh
Q 021065          305 KLYMFIEIFL  314 (318)
Q Consensus       305 kl~~~e~~v~  314 (318)
                      .|...+++|+
T Consensus       162 ~L~~rdeli~  171 (302)
T PF09738_consen  162 QLKQRDELIE  171 (302)
T ss_pred             HHHHHHHHHH
Confidence            8888877775

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=85.76  E-value=16  Score=38.86  Aligned_cols=9  Identities=11%  Similarity=0.516  Sum_probs=5.5

Q ss_pred             hHHHHHHHH
Q 021065          111 SDEYRAYLK  119 (318)
Q Consensus       111 p~~y~a~Lk  119 (318)
                      .-+|+.|+=
T Consensus        50 ~rdY~Tf~W   58 (546)
T PF07888_consen   50 TRDYYTFVW   58 (546)
T ss_pred             hhheeeEEe
Confidence            347777753

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK02793 phi X174 lysis protein; Provisional

Probab=85.75  E-value=5.6  Score=31.09  Aligned_cols=50  Identities=16%  Similarity=0.205  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      +++.++..|+...+-+...+..       |...-.....+|..|+++|+.+-+.++.
T Consensus         5 ~~e~Ri~~LE~~lafQe~tIe~-------Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   54 (72)
T PRK02793          5 SLEARLAELESRLAFQEITIEE-------LNVTVTAHEMEMAKLRDHLRLLTEKLKA   54 (72)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3555555555554444333332       2222222345566777777766665554

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=85.62  E-value=14  Score=34.40  Aligned_cols=86  Identities=12%  Similarity=0.058  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-----
Q 021065          231 VDDKRARRMLSNRESARRSRRRKQAH----LNELETQAGQLRAEHSSLLKGLTDVNQKYDESA----------VN-----  291 (318)
Q Consensus       231 ~e~KR~RR~lsNRESArRSR~RKk~~----l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~----------~E-----  291 (318)
                      .-.+|.||....+.++=.-+-+=.+.    |...-.+|..|+..|+.|...+.+|+.-+..|.          .|     
T Consensus        20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFG   99 (195)
T PF10226_consen   20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFG   99 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhh
Confidence            34678888888777775444333222    222334456666667766666666664444333          22     


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          292 ---NRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       292 ---N~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                         -.++++++.....||+.+|...+.+
T Consensus       100 ryta~vmr~eV~~Y~~KL~eLE~kq~~L  127 (195)
T PF10226_consen  100 RYTASVMRQEVAQYQQKLKELEDKQEEL  127 (195)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3456888888888888887655443

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=85.36  E-value=6.2  Score=34.98  Aligned_cols=44  Identities=25%  Similarity=0.366  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 021065          264 AGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKLY  307 (318)
Q Consensus       264 V~~L~~EN~~L~~~l~~L~qk~~~l~~---EN~~Lrael~~Lr~kl~  307 (318)
                      +..+..+...|..+|.....++..|..   +|..|++++..|..+..
T Consensus        22 ~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~   68 (155)
T PF06810_consen   22 VDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK   68 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444433   55666666666665555

The function of this family is unknown.; GO: 0005198 structural molecule activity

>PRK00295 hypothetical protein; Provisional

Probab=85.35  E-value=7.1  Score=30.16  Aligned_cols=49  Identities=16%  Similarity=0.115  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      ++.++..|+...+-+...+..|+.-       -.....+|..|+.+|+++.+.++.
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~-------v~~Qq~~I~~L~~ql~~L~~rl~~   51 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDV-------LVEQQRVIERLQLQMAALIKRQEE   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555554444444443333221       122345566666666666555543

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=85.07  E-value=0.043  Score=55.03  Aligned_cols=54  Identities=24%  Similarity=0.279  Sum_probs=46.6

Q ss_pred             CchHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 021065          229 DSVDDKRARRMLSNRESARR---SRRRKQAHLNELETQAGQLR-AEHSSLLKGLTDVN  282 (318)
Q Consensus       229 d~~e~KR~RR~lsNRESArR---SR~RKk~~l~eLE~qV~~L~-~EN~~L~~~l~~L~  282 (318)
                      ...+.|+..|+++|+.+|.+   +|.||+.+...|..+|+.|+ .+|..|..++..|.
T Consensus       149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lq  206 (395)
T KOG1414|consen  149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQ  206 (395)
T ss_pred             CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccc
Confidence            45678999999999999999   99999999999999999999 88877666665543

>PRK09039 hypothetical protein; Validated

Probab=84.99  E-value=8.6  Score=38.08  Aligned_cols=6  Identities=17%  Similarity=0.456  Sum_probs=2.6

Q ss_pred             HHHHHh
Q 021065          115 RAYLKT  120 (318)
Q Consensus       115 ~a~Lk~  120 (318)
                      |.||.+
T Consensus        41 q~fLs~   46 (343)
T PRK09039         41 QFFLSR   46 (343)
T ss_pred             HHHHHH
Confidence            444443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=84.74  E-value=7  Score=38.65  Aligned_cols=24  Identities=25%  Similarity=0.159  Sum_probs=15.0

Q ss_pred             CChHHHHHHHHhhhhhhHHHHHHh
Q 021065          109 VDSDEYRAYLKTKLDLACAAVALR  132 (318)
Q Consensus       109 ~Dp~~y~a~Lk~kL~~~~AAva~~  132 (318)
                      -+..+-+..|-..|...+..|+--
T Consensus        93 ~~L~~~~~~le~~L~~~~e~v~qL  116 (306)
T PF04849_consen   93 QDLSERNEALEEQLGAALEQVEQL  116 (306)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666777777766666543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=84.67  E-value=9.2  Score=33.13  Aligned_cols=30  Identities=10%  Similarity=-0.053  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          285 YDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       285 ~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      +..|+-|++.++.-...|..+|+|||-.++
T Consensus        34 Ia~LEGE~r~~e~l~~dL~rrIkMLE~aLk   63 (134)
T PF08232_consen   34 IAFLEGERRGQENLKKDLKRRIKMLEYALK   63 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444455555555555444

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=84.47  E-value=5.2  Score=38.16  Aligned_cols=16  Identities=31%  Similarity=0.243  Sum_probs=13.6

Q ss_pred             HHHHHHhhhhhhHHHH
Q 021065          114 YRAYLKTKLDLACAAV  129 (318)
Q Consensus       114 y~a~Lk~kL~~~~AAv  129 (318)
                      =+.-|..||+.|++.+
T Consensus        17 ~~~~L~~kLE~DL~~~   32 (248)
T PF08172_consen   17 EQKELNAKLENDLAKV   32 (248)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3567899999999998

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=84.37  E-value=30  Score=33.73  Aligned_cols=68  Identities=13%  Similarity=0.103  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065          251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG  318 (318)
Q Consensus       251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~  318 (318)
                      ..+...++..+.+++.++.+..+..+++.+++.++.+....=..|+.+-..|...|..+..-|.+|-|
T Consensus       196 e~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~  263 (269)
T PF05278_consen  196 EEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG  263 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33344455555666666666667777777777777777777777777777777777777777777654

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=84.37  E-value=12  Score=36.91  Aligned_cols=72  Identities=13%  Similarity=0.188  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       243 RESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      -|+++|-....+.++.+++.....-+.....-..+-+.+.+++..+..||--|++++.....|...-|.+|-
T Consensus       181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vi  252 (305)
T PF14915_consen  181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVI  252 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            367888888888888888877766666666666677778888889999999999999999998887777664

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=84.29  E-value=28  Score=33.27  Aligned_cols=59  Identities=17%  Similarity=0.149  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI  312 (318)
Q Consensus       254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~  312 (318)
                      ...+..|+.++..++.+-..|..++..|..++..+..+-..|+.++..++..+..++..
T Consensus        88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~  146 (239)
T COG1579          88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR  146 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466666666666666666666666666666666666666666666666665555544

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=84.12  E-value=6.4  Score=30.42  Aligned_cols=33  Identities=18%  Similarity=0.206  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       272 ~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      ..+..++..+++++..+..||..|+.++..|..
T Consensus        27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~   59 (85)
T TIGR02209        27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR   59 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            344444455555555555555555555555544

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=84.08  E-value=20  Score=35.18  Aligned_cols=55  Identities=20%  Similarity=0.209  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      .+..|+.+...|..+-..+......+..++..+..+...|+.++..+..+|..++
T Consensus        79 el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen   79 ELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444455555555555555555555555444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF15294 Leu_zip: Leucine zipper

Probab=84.03  E-value=3.9  Score=39.86  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      |..++..|+.||..|+.++..+..++....-|+..|..++..|+.
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677778888888888888888888888888888888887777

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=83.97  E-value=2.9  Score=45.33  Aligned_cols=47  Identities=28%  Similarity=0.361  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      ||..|+.|+.|.+..+..=++|+.++..+....+.||.++..||.+.
T Consensus       423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~en  469 (697)
T PF09726_consen  423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQEN  469 (697)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence            44444444444444444444444443333333333333333333333

; GO: 0016021 integral to membrane

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.83  E-value=14  Score=41.06  Aligned_cols=31  Identities=19%  Similarity=0.163  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          285 YDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       285 ~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      +-.+...|..|..++++|.-|++.++..|.-
T Consensus       432 iv~~nak~~ql~~eletLn~k~qqls~kl~D  462 (1118)
T KOG1029|consen  432 IVYLNAKKKQLQQELETLNFKLQQLSGKLQD  462 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3345566777788888888888888776653

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=83.81  E-value=12  Score=40.16  Aligned_cols=32  Identities=19%  Similarity=0.230  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  286 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~  286 (318)
                      .+..+|+..+..|+.++..|..++..+..+..
T Consensus       436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~  467 (652)
T COG2433         436 EENSELKRELEELKREIEKLESELERFRREVR  467 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666655433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=83.73  E-value=33  Score=31.68  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAV  290 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~  290 (318)
                      ..++.++..|+.+...+..++...++++..+..
T Consensus        66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~   98 (302)
T PF10186_consen   66 EELRERLERLRERIERLRKRIEQKRERLEELRE   98 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PHA03162 hypothetical protein; Provisional

Probab=83.72  E-value=3.9  Score=35.96  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          251 RRKQAHLNELETQAGQLRAEHSSLLKGLT  279 (318)
Q Consensus       251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~  279 (318)
                      -+|+.-+++|..++..|+.||..|++++.
T Consensus         9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~   37 (135)
T PHA03162          9 PKAQPTMEDLAAEIAKLQLENKALKKKIK   37 (135)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667799999999999999999999983

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.72  E-value=9.1  Score=37.14  Aligned_cols=56  Identities=13%  Similarity=0.297  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      .+++.+|+.|..+...+..++..+..++..+..+=..|+.+|..|...|..-.+.+
T Consensus        48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l  103 (265)
T COG3883          48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL  103 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444455555555555555555554444433

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=83.71  E-value=8.1  Score=36.37  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 021065          264 AGQLRAEHSSLLKGLTDVNQKYD---ESAVNNRILKADI  299 (318)
Q Consensus       264 V~~L~~EN~~L~~~l~~L~qk~~---~l~~EN~~Lrael  299 (318)
                      ...|+.||..|++++..|+.+..   .+..||..||..+
T Consensus        71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL  109 (276)
T PRK13922         71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELL  109 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444555555555544444333   5566666666543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=83.58  E-value=4.8  Score=38.31  Aligned_cols=52  Identities=13%  Similarity=0.193  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      +-+.+|..|++.|+.|...|+.+++.++.++..+....+.|-.++..+..++
T Consensus        54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~  105 (263)
T PRK10803         54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG  105 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3457889999999999999999999999999999999999988888865543

>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids []

Probab=83.55  E-value=9.7  Score=29.92  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      |...+....++...|...+..|-.++..|...+
T Consensus        33 Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql   65 (70)
T PF04899_consen   33 LQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL   65 (70)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333444444444333

>PRK04325 hypothetical protein; Provisional

Probab=83.52  E-value=7.9  Score=30.38  Aligned_cols=53  Identities=11%  Similarity=0.165  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      ...++.++..|+...+-+...++.|       ...-.....+|..|+.+|+.+-+.++.+
T Consensus         4 ~~~~e~Ri~~LE~klAfQE~tIe~L-------N~vv~~Qq~~I~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325          4 VQEMEDRITELEIQLAFQEDLIDGL-------NATVARQQQTLDLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666665555544444332       2222223455677777777776666543

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=83.38  E-value=7.3  Score=34.77  Aligned_cols=45  Identities=27%  Similarity=0.364  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          262 TQAGQLRAEHSSLLKGLTDV-NQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       262 ~qV~~L~~EN~~L~~~l~~L-~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      ...-.++...++|+.++..+ +.++..+..++..|+.+++.|+.+|
T Consensus        51 ~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L   96 (177)
T PF07798_consen   51 NQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL   96 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444333 2334444444444444444444443

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=83.36  E-value=12  Score=39.09  Aligned_cols=77  Identities=22%  Similarity=0.363  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 021065          233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES--------AVNNRILKADIETLRA  304 (318)
Q Consensus       233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l--------~~EN~~Lrael~~Lr~  304 (318)
                      ....++|.+.-+.-+    |-.+.+.+|+.+++..+.|+....-+--.|..+..++        -+||..+|++++.||.
T Consensus       241 kehv~km~kdle~Lq----~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~  316 (575)
T KOG4403|consen  241 KEHVNKMMKDLEGLQ----RAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRV  316 (575)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH
Confidence            334445555444433    3345667777777766666555444444444444422        4788999999999999


Q ss_pred             HHHHHHHhh
Q 021065          305 KLYMFIEIF  313 (318)
Q Consensus       305 kl~~~e~~v  313 (318)
                      .|..+|..+
T Consensus       317 ~L~kAEkel  325 (575)
T KOG4403|consen  317 ALEKAEKEL  325 (575)
T ss_pred             HHHHHHHHH
Confidence            999999765

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=83.25  E-value=8.5  Score=31.21  Aligned_cols=76  Identities=17%  Similarity=0.269  Sum_probs=54.2

Q ss_pred             HhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 021065          241 SNRESARRSRRRKQ------AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       241 sNRESArRSR~RKk------~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~---EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      .|.+..+.+-.++.      ..+-+|..+...|..+-..|+.+-..+..++..+..   +-..|++++..|..++..+|.
T Consensus         9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~   88 (108)
T PF02403_consen    9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE   88 (108)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence            46666666555553      456666677777777777777777777777777765   467788888888888888888


Q ss_pred             hhhhc
Q 021065          312 IFLGE  316 (318)
Q Consensus       312 ~v~~~  316 (318)
                      .+..+
T Consensus        89 ~~~~~   93 (108)
T PF02403_consen   89 QLKEL   93 (108)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77653

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PRK04406 hypothetical protein; Provisional

Probab=83.17  E-value=8.1  Score=30.53  Aligned_cols=49  Identities=12%  Similarity=0.151  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR  303 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr  303 (318)
                      +++.+||.++..++.-...|...+..-.+++..|..+=+.|+.++..+.
T Consensus        11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406         11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5789999999999999999999999999999999988888888887765

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=83.11  E-value=5.8  Score=41.31  Aligned_cols=55  Identities=13%  Similarity=0.170  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVN-QKYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~-qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      .|..+.+.|+.....+..++...- ....++..|-+.|+.++..|+..|..+.+.+
T Consensus        84 ~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l  139 (472)
T TIGR03752        84 ALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL  139 (472)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555444444444332 2233444455555555555555555554443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PRK00736 hypothetical protein; Provisional

Probab=82.93  E-value=9.3  Score=29.53  Aligned_cols=19  Identities=37%  Similarity=0.478  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 021065          296 KADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       296 rael~~Lr~kl~~~e~~v~  314 (318)
                      ..+|..|+.+|+.+-+.++
T Consensus        32 q~~i~~L~~ql~~L~~rl~   50 (68)
T PRK00736         32 WKTVEQMRKKLDALTERFL   50 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455666666666655544

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.90  E-value=13  Score=35.08  Aligned_cols=65  Identities=14%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      .....+|++++.+.+.|..|-..+..+|..+.+.+..++..=..++.+....+..+..+.+.+.+
T Consensus        28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~   92 (230)
T PF10146_consen   28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKP   92 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34457888889999999998888888888888888877766666666666666666655555443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR02231 conserved hypothetical protein

Probab=82.57  E-value=25  Score=36.30  Aligned_cols=44  Identities=9%  Similarity=0.069  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      .|..-+..+.+++..+..+.+.|..++.+|+.+|..+++.+..+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l  171 (525)
T TIGR02231       128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL  171 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444455555555555555666666666666666666555444

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=82.55  E-value=17  Score=35.11  Aligned_cols=21  Identities=19%  Similarity=0.176  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 021065          294 ILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       294 ~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      .++.++..++.++..++..+.
T Consensus       250 ~~~~~l~~~~~~l~~~~~~l~  270 (423)
T TIGR01843       250 EAQARLAELRERLNKARDRLQ  270 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            345555555555555554433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=82.15  E-value=0.62  Score=46.82  Aligned_cols=52  Identities=29%  Similarity=0.461  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 021065          233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL-KGLTDVNQK  284 (318)
Q Consensus       233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~-~~l~~L~qk  284 (318)
                      +++.|=+.+||.+|-++|.|||.....|+.+...+..+|..|. .+++.|..+
T Consensus       284 ~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~  336 (395)
T KOG1414|consen  284 ERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNE  336 (395)
T ss_pred             hhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhH
Confidence            3445558999999999999999999999999999999998887 444443333

>PRK14127 cell division protein GpsB; Provisional

Probab=82.15  E-value=7.9  Score=32.85  Aligned_cols=13  Identities=8%  Similarity=0.033  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHhh
Q 021065          301 TLRAKLYMFIEIF  313 (318)
Q Consensus       301 ~Lr~kl~~~e~~v  313 (318)
                      .+-.||..||..|
T Consensus        89 DiLKRls~LEk~V  101 (109)
T PRK14127         89 DILKRLSNLEKHV  101 (109)
T ss_pred             HHHHHHHHHHHHH
Confidence            4455666666554

>PHA03155 hypothetical protein; Provisional

Probab=82.12  E-value=10  Score=32.65  Aligned_cols=26  Identities=35%  Similarity=0.479  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTD  280 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~  280 (318)
                      .-+++|+.++..|+.||..|++++..
T Consensus         8 ~tvEeLaaeL~kL~~ENK~LKkkl~~   33 (115)
T PHA03155          8 ADVEELEKELQKLKIENKALKKKLLQ   33 (115)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34799999999999999999999854

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=82.02  E-value=8.4  Score=42.43  Aligned_cols=64  Identities=20%  Similarity=0.302  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      .||+..+..|..++..+..++..++.+|..|+..+.....++..|.+++..||.+|...+..+-
T Consensus       297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~  360 (775)
T PF10174_consen  297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE  360 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4667788888888888888888889999999999999999999999999999998887776654

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=81.78  E-value=20  Score=37.29  Aligned_cols=60  Identities=18%  Similarity=0.169  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      .+.|+.++.+|+.||..|+..+..|...+..+..+-..+-.+++.||-++.-..+.-+++
T Consensus       299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm  358 (502)
T KOG0982|consen  299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRM  358 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667888999999999999999999999999999888888888888887665554443

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=81.71  E-value=20  Score=36.26  Aligned_cols=79  Identities=18%  Similarity=0.197  Sum_probs=53.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q 021065          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN--------------QKYDESAVNNRILKADI  299 (318)
Q Consensus       234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~--------------qk~~~l~~EN~~Lrael  299 (318)
                      -|.|.+.-|-|--|.-|.    -+++-..+.++|+..|++|..+|..++              .-+..+..||..|..++
T Consensus        75 ~kirk~~e~~eglr~i~e----s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL  150 (401)
T PF06785_consen   75 TKIRKITEKDEGLRKIRE----SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL  150 (401)
T ss_pred             HHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence            455666666666655553    334444555667777777776665443              33556788999999999


Q ss_pred             HHHHHHHHHHHHhhhhc
Q 021065          300 ETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       300 ~~Lr~kl~~~e~~v~~~  316 (318)
                      .+|.+.+...|+..+.+
T Consensus       151 ~~l~~e~~Ekeeesq~L  167 (401)
T PF06785_consen  151 DALQQECGEKEEESQTL  167 (401)
T ss_pred             HHHHHHHhHhHHHHHHH
Confidence            99999998888776654

>smart00787 Spc7 Spc7 kinetochore protein

Probab=81.71  E-value=10  Score=37.36  Aligned_cols=59  Identities=14%  Similarity=0.102  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      ++..|..++..+..++...+.++.+++.++..+...=..++.+..+++..|..+|..+.
T Consensus       205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~  263 (312)
T smart00787      205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE  263 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566666666666666666666666666666666666666666666666666553

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=81.59  E-value=17  Score=30.17  Aligned_cols=47  Identities=23%  Similarity=0.282  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQL--RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM  308 (318)
Q Consensus       255 ~~l~eLE~qV~~L--~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~  308 (318)
                      .++..+|.+++.|  ..+-..|..+++.       +.-+=+.|.+++..+.+.+..
T Consensus        49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~e-------l~G~~~~l~~~l~~v~~~~~l   97 (106)
T PF10805_consen   49 RRLQALETKLEHLPTRDDVHDLQLELAE-------LRGELKELSARLQGVSHQLDL   97 (106)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHH
Confidence            3445555555555  4444444444444       444445555566666555543

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region

Probab=81.52  E-value=1.5  Score=42.41  Aligned_cols=60  Identities=18%  Similarity=0.186  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      .++.++|.+|+.|+.-|..|..+|+.=..-|..+.-.-..+|+++.++..|++.+|+.-+
T Consensus       217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa  276 (311)
T PF04642_consen  217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQA  276 (311)
T ss_pred             HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHH
Confidence            457889999999999999999999877777777666666799999999999999887543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.46  E-value=9.7  Score=42.23  Aligned_cols=21  Identities=19%  Similarity=0.252  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhc
Q 021065          296 KADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       296 rael~~Lr~kl~~~e~~v~~~  316 (318)
                      .+++..|.++|+.+.+++.++
T Consensus       485 isei~qlqarikE~q~kl~~l  505 (1118)
T KOG1029|consen  485 ISEIDQLQARIKELQEKLQKL  505 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            445555556666555555443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=81.44  E-value=23  Score=30.14  Aligned_cols=23  Identities=17%  Similarity=0.492  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 021065          277 GLTDVNQKYDESAVNNRILKADI  299 (318)
Q Consensus       277 ~l~~L~qk~~~l~~EN~~Lrael  299 (318)
                      ++..+..++..|..+|..|-.+|
T Consensus       106 e~~~~~~r~~dL~~QN~lLh~Ql  128 (132)
T PF07926_consen  106 ELSELEQRIEDLNEQNKLLHDQL  128 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444433333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]

Probab=81.41  E-value=4.3  Score=43.44  Aligned_cols=52  Identities=21%  Similarity=0.187  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      .+|-.+|.+|..|+.-|+.++...++--..|+..+++|..++..+++++-.+
T Consensus       325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a  376 (832)
T KOG2077|consen  325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA  376 (832)
T ss_pred             HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5777888888888888888888777777777777777777776666665544

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=81.38  E-value=13  Score=37.27  Aligned_cols=17  Identities=35%  Similarity=0.200  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 021065          296 KADIETLRAKLYMFIEI  312 (318)
Q Consensus       296 rael~~Lr~kl~~~e~~  312 (318)
                      |+.|..|+..|..++..
T Consensus       193 K~KIR~lq~~L~~~~~~  209 (342)
T PF06632_consen  193 KAKIRELQRLLASAKEE  209 (342)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            66777777777776654

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins

Probab=81.21  E-value=11  Score=36.92  Aligned_cols=54  Identities=15%  Similarity=0.059  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      .|+=.+|.+++....|..+|..++..       |...|..||+++.+.+.+|.-+.+.||.
T Consensus        64 ~~~y~~e~e~~sy~~e~~~l~~qvs~-------l~~~~~~~r~~~~~~~~~~eglrep~kk  117 (389)
T PF06216_consen   64 DYIYNKEFERQSYSNEWISLNDQVSH-------LQHQNSEQRQQIREMREIIEGLREPVKK  117 (389)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence            45555666666666666666555554       5566777888888888888877777764

The function of this family is unknown.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=80.81  E-value=8.7  Score=39.94  Aligned_cols=52  Identities=17%  Similarity=0.134  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       265 ~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      ..++...++|..++..+..+...+..+|..|+.....++.||+.+++.-++.
T Consensus       378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~  429 (493)
T KOG0804|consen  378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA  429 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3334444445555556666666777778888888888888888877766554

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=80.79  E-value=12  Score=32.40  Aligned_cols=30  Identities=27%  Similarity=0.360  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          253 KQAHLNELETQAGQLRAEHSSLLKGLTDVN  282 (318)
Q Consensus       253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~  282 (318)
                      |..-+++|..++..|+.||..|++++..-.
T Consensus         1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~   30 (118)
T PF05812_consen    1 KDMTMEELAAELQKLQMENKALKKKLRQSV   30 (118)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            456789999999999999999999987543

; PDB: 2OA5_B 2H3R_D.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=80.70  E-value=11  Score=37.06  Aligned_cols=36  Identities=14%  Similarity=0.194  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      +.|.-++..|+.+|.+||.++..|...|..+.+.|.
T Consensus       251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~  286 (294)
T KOG4571|consen  251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLIL  286 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555666666666666666666666655553

>smart00787 Spc7 Spc7 kinetochore protein

Probab=80.57  E-value=41  Score=33.10  Aligned_cols=7  Identities=43%  Similarity=0.757  Sum_probs=3.6

Q ss_pred             HHHHHhh
Q 021065           39 LEKFLQE   45 (318)
Q Consensus        39 FqkfLeE   45 (318)
                      ++.||..
T Consensus        12 L~dFL~~   18 (312)
T smart00787       12 LQDFLNM   18 (312)
T ss_pred             HHHHHHH
Confidence            4555554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=80.46  E-value=6.2  Score=37.22  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI  299 (318)
Q Consensus       266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael  299 (318)
                      .++.++..|.++.+.++.+|..|..||..|+.++
T Consensus       176 ~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i  209 (216)
T KOG1962|consen  176 KAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI  209 (216)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444443

>PRK13182 racA polar chromosome segregation protein; Reviewed

Probab=80.29  E-value=11  Score=34.29  Aligned_cols=20  Identities=10%  Similarity=0.180  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 021065          296 KADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       296 rael~~Lr~kl~~~e~~v~~  315 (318)
                      |.+++++.++|..||..|++
T Consensus       124 r~e~ee~~~~l~~le~~~~~  143 (175)
T PRK13182        124 RREMEEMLERLQKLEARLKK  143 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555544

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.23  E-value=14  Score=37.27  Aligned_cols=54  Identities=15%  Similarity=0.231  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM  308 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~  308 (318)
                      +.++.|....+.|+.--++|..-.+.|......|+.+-..|+.++.-|..|+.+
T Consensus       225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            334444444444444434444444444444444444444444444444444444

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=80.20  E-value=25  Score=27.69  Aligned_cols=62  Identities=13%  Similarity=0.116  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN  317 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~  317 (318)
                      -+.+++..+..++.+-..+..+...+.++.+.+..+=..-...+..+-..+..+.+.|+.++
T Consensus        27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~   88 (90)
T PF06103_consen   27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN   88 (90)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            36666777777777777777777777777777766666667777777777888777777654

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=80.10  E-value=30  Score=33.48  Aligned_cols=54  Identities=20%  Similarity=0.217  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      +..-+-....+|..+.+++...++.+..+..+...|++++..|+.......++|
T Consensus       177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i  230 (258)
T PF15397_consen  177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI  230 (258)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh
Confidence            334455667899999999999999999999999999999999999887554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	3e-13
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	2e-09
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	2e-08
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	9e-08
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	1e-07
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	1e-07
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	9e-07
2wt7_B	90	Transcription factor MAFB; transcription, transcri	1e-06
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	1e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285
           KR  R++ NRE+AR SRR+K+ ++  LE +   L  ++ +L++ L  +   Y
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           KR + +  NR +A RSR++++  +  LE +A  L + +  L
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQL 41

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 276
           K  R+ + NR +A +SR+RK   +  LE +   L+A++S L  
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELAS 43

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 47.5 bits (113), Expect = 9e-08
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 276
           +KR  R   N+ +A + R R++   + L+ +  QL  E S+L  
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQT 44

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 18/74 (24%), Positives = 29/74 (39%)

Query: 229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288
           + +  K+ RR L NR  A   R ++     ELE Q  +L+ E   L      +  + D  
Sbjct: 32  EIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDAL 91

Query: 289 AVNNRILKADIETL 302
                 L+    T+
Sbjct: 92  RSKYEALQNFARTV 105

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           K+ ++M  N+ +A R R++K+A    L  +  +L  ++ +L
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEAL 42

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 44.8 bits (106), Expect = 9e-07
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 226 EGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           E  D    KRAR    N E+ARRSR RK   + +LE +  +L +++  L
Sbjct: 5   ESSDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHL 49

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287
           K+ RR L NR  A+  R ++    + LE +  QL  +   L + ++ + ++ D 
Sbjct: 27  KQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query: 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291
            +  ++R   NR + R  R+RK+ HL  LETQ   L+  HSS       + QK  +    
Sbjct: 6   QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65

Query: 292 NRILK 296
            RILK
Sbjct: 66  LRILK 70

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 39/272 (14%), Positives = 80/272 (29%), Gaps = 67/272 (24%)

Query: 22  PASFHALPMNRSQSEWELEKFLQEVTVSPRAI------------SSSSASDNSVPAVIGP 69
              F    ++R Q   +L + L E+  +   +            +        V   +  
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 70  SV--MSKSRAYEIGDDDVVEIKKS--HR-DQSLDPPVIPSSTAPVDSDEYRAYLKTKLDL 124
            +  ++         + V+E+ +   ++ D +       SS   +     +A L+  L  
Sbjct: 183 KIFWLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 125 ACAAVALRTAPVKPEDKSSLI----ENQTQAAKPSELGSQAMATVNVSTAHDALG----T 176
                       KP +   L+    +N  +A     L  + + T       D L     T
Sbjct: 241 ------------KPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 177 HPKADFRPLG-----------------SADLP--AVQARP------AAQVRQSTSGSSR- 210
           H   D   +                    DLP   +   P      A  +R   +     
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 211 EDSDDDELEGDTE-TIEGLDSVDDKRARRMLS 241
           +  + D+L    E ++  L+  + ++    LS
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 228 LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           +D   D+   R   N  + R+SR + +    E + +  +L AE+  L
Sbjct: 9   VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERL 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.52
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.29
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.22
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.19
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.13
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	99.0
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.91
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.6
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.52
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.5
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.22
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.24
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.08
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	96.03
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.78
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	95.76
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	95.67
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	95.13
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	94.87
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.26
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	94.12
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.54
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	93.35
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	93.18
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	93.07
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	92.99
2wvr_A	209	Geminin; DNA replication license, DNA replication	92.99
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	92.99
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	91.88
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.77
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	91.65
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.59
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	91.59
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	91.46
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	90.42
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	90.37
3m0d_C	65	TNF receptor-associated factor 1; trimeric helix c	90.19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.18
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	90.05
3m48_A	33	General control protein GCN4; leucine zipper, synt	90.01
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	89.88
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	89.5
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	89.23
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	89.16
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	89.16
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	89.13
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	89.13
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	89.11
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.87
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	88.83
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	88.64
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	88.59
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	88.55
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	88.51
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.43
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	88.42
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	88.41
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	88.27
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.09
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	87.82
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	87.74
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	87.64
3he4_A	56	Synzip6; heterodimeric coiled-coil, de novo protei	87.63
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	87.12
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	86.9
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	86.7
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	86.54
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	86.46
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	86.32
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	86.08
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	86.07
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	86.01
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	85.72
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	85.54
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	85.52
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	85.37
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	85.09
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	84.89
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	84.83
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	84.76
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	84.75
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	84.67
3bas_A	89	Myosin heavy chain, striated muscle/general contro	84.64
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	84.53
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	84.52
1uo4_A	34	General control protein GCN4; four helix bundle, c	84.47
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	84.46
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	84.32
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	83.96
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	83.94
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	83.93
2w6b_A	56	RHO guanine nucleotide exchange factor 7; X-RAY cr	83.84
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	83.71
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	83.7
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	83.61
2bni_A	34	General control protein GCN4; four helix bundle, a	83.51
2hy6_A	34	General control protein GCN4; protein design, para	83.4
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	83.39
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	83.0
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	82.78
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	82.73
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	82.54
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	82.53
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	82.51
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	81.97
2oa5_A	110	Hypothetical protein BQLF2; MHR28B, NESG, structur	81.82
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	81.81
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	81.52
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	81.36
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	81.23
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	80.92
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	80.47
3bas_A	89	Myosin heavy chain, striated muscle/general contro	80.37
3u06_A	412	Protein claret segregational; motor domain, stalk	80.28
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	80.14
1gk6_A	59	Vimentin; intermediate filament, dimer, parallel c	80.13

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.52  E-value=1.3e-14  Score=106.56  Aligned_cols=52  Identities=35%  Similarity=0.604  Sum_probs=49.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY  285 (318)
Q Consensus       234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~  285 (318)
                      |+.+||++||+||++||.||++|+++||.+|..|+.||..|..++..|.+.|
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999999999999999999999999887665

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.29  E-value=1.3e-11  Score=92.52  Aligned_cols=55  Identities=24%  Similarity=0.390  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE  287 (318)
Q Consensus       233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~  287 (318)
                      +||.+|+++||++|++||.||++++.+|+.+|..|+.+|..|..++..|..++..
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~   55 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK   55 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3799999999999999999999999999999999999999998888765554444

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.22  E-value=4.2e-11  Score=88.92  Aligned_cols=52  Identities=27%  Similarity=0.392  Sum_probs=46.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY  285 (318)
Q Consensus       234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~  285 (318)
                      ||.+|+++||++|++||.||++|+.+|+.+|..|+.+|..|..++..|..++
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~   52 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV   52 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999988887744443

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.19  E-value=3e-11  Score=90.84  Aligned_cols=47  Identities=28%  Similarity=0.388  Sum_probs=41.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          240 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  286 (318)
Q Consensus       240 lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~  286 (318)
                      .+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|++++.
T Consensus        15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45999999999999999999999999999999999988888776553

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.13  E-value=1.3e-10  Score=86.68  Aligned_cols=52  Identities=29%  Similarity=0.429  Sum_probs=46.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY  285 (318)
Q Consensus       234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~  285 (318)
                      |+.+|..+||++|++||.||++++.+|+.+|..|+.+|..|..++..|..++
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~   52 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQV   52 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999999999999999999999999988887754443

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=99.00  E-value=1.2e-09  Score=84.00  Aligned_cols=60  Identities=37%  Similarity=0.421  Sum_probs=47.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL  295 (318)
Q Consensus       236 ~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L  295 (318)
                      .||+..||.++|..|.||++||.+||.+|..|+.++..|..++..|..++..|..||..|
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l   69 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL   69 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            588899999999999999999999999999999988876555555555555555444443

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.91  E-value=3.8e-09  Score=79.19  Aligned_cols=50  Identities=22%  Similarity=0.386  Sum_probs=40.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ  283 (318)
Q Consensus       234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~q  283 (318)
                      |+.+++.+||.+|+|+|.||++++.+|+.++..|+.+|..|..++..|..
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~   51 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK   51 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999888876443

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.60  E-value=2.4e-07  Score=73.82  Aligned_cols=51  Identities=24%  Similarity=0.260  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN  282 (318)
Q Consensus       232 e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~  282 (318)
                      +.+-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..|.
T Consensus        13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~   63 (87)
T 1hjb_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS   63 (87)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555677999999999999999999999999999999999998887633

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.52  E-value=5.3e-07  Score=70.49  Aligned_cols=54  Identities=22%  Similarity=0.262  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  286 (318)
Q Consensus       233 ~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~  286 (318)
                      .+-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..|..++.
T Consensus        14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~   67 (78)
T 1gu4_A           14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS   67 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455679999999999999999999999999999999988888776444433

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.50  E-value=3.6e-09  Score=87.28  Aligned_cols=71  Identities=30%  Similarity=0.386  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      .+.|.+||.++||.+|+.||.||.++..+||.++..|..+...|              ..||..|+.++..|+.++..|.
T Consensus        34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L--------------~~En~~l~~E~~~lk~k~e~L~   99 (107)
T 3a5t_A           34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL--------------ASENASMKLELDALRSKYEALQ   99 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT--------------TSTTSHHHHTTTSSSSCC----
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999998776665555444              4455556666666666655555


Q ss_pred             Hhhhh
Q 021065          311 EIFLG  315 (318)
Q Consensus       311 ~~v~~  315 (318)
                      ..+..
T Consensus       100 ~~a~s  104 (107)
T 3a5t_A          100 NFART  104 (107)
T ss_dssp             -----
T ss_pred             HHHHH
Confidence            44433

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.22  E-value=7.7e-06  Score=65.57  Aligned_cols=52  Identities=25%  Similarity=0.338  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN  282 (318)
Q Consensus       231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~  282 (318)
                      ...|..||.++||.+|+-+|.||.....+||.++..|..+...|..++..+.
T Consensus        24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~   75 (90)
T 2wt7_B           24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA   75 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999888888777776665555433

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.24  E-value=0.00074  Score=46.98  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI  299 (318)
Q Consensus       254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael  299 (318)
                      |+|+.+||.++..|+..|++|..++..       |..||..||+-+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervst-------Lq~EN~mLRqvl   40 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLST-------LQNENQMLRHIL   40 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHh
Confidence            589999999999999999888777765       778898888754

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.08  E-value=0.034  Score=43.68  Aligned_cols=51  Identities=18%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      -|.-+|+.|+.+|..|..++..++.....+..+|..|+.+....+.+|..+
T Consensus        24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L   74 (81)
T 2jee_A           24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555556777777777777766666544

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=96.03  E-value=0.045  Score=46.48  Aligned_cols=61  Identities=16%  Similarity=0.144  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      .+...+.|+.++..+..|...|+.++..++.++..+..++..|+.++..|+.++..+|...
T Consensus        73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A           73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455778888888888888888888888888888888888888888888888888887654

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.78  E-value=0.062  Score=42.22  Aligned_cols=64  Identities=14%  Similarity=0.144  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhccC
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI-------LKADIETLRAKLYMFIEIFLGENG  318 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~-------Lrael~~Lr~kl~~~e~~v~~~~~  318 (318)
                      .-++.||.+|..+-....-|.-++..|+++...+..+|..       |..++..|+.....-.+.|..+.|
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg   76 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3477889998888888888888888888888888887777       555666666666666666665543

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=95.76  E-value=0.052  Score=42.84  Aligned_cols=49  Identities=12%  Similarity=0.138  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065          266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG  318 (318)
Q Consensus       266 ~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~  318 (318)
                      .--.||..|..++..+..++..+..+|..|+    +|-.+++.+-++|+++||
T Consensus        35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L~~   83 (83)
T 1wlq_A           35 EALKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERLSN   83 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence            3445888999999998888999999998776    488889999999999998

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=95.67  E-value=0.0053  Score=49.20  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021065          231 VDDKRARRMLSNRESARRSRRRKQAHLNELET  262 (318)
Q Consensus       231 ~e~KR~RR~lsNRESArRSR~RKk~~l~eLE~  262 (318)
                      ...|..||..+||.+|+++|+||...+..|+.
T Consensus        59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            35788999999999999999999998887764

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=95.13  E-value=0.081  Score=38.28  Aligned_cols=48  Identities=21%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      .+.|-.||+.|+.||..|++++.+-..++..|++|-.-+|.=+..|..
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~   52 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence            467889999999999999999999999999999888777766655543

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=94.87  E-value=0.072  Score=43.32  Aligned_cols=30  Identities=17%  Similarity=0.205  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY  285 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~  285 (318)
                      .+..|..+|+.|+.||..|+.++..|.-++
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L   42 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQL   42 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777788888888877777766553

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.26  E-value=0.3  Score=41.41  Aligned_cols=60  Identities=10%  Similarity=0.139  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      +-.+..++..|+.+...+.+++..|..++..+..++..++.++..|+.++..++.-++++
T Consensus        70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666777777777777777777777777777777777777777777777766653

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=94.12  E-value=0.21  Score=37.26  Aligned_cols=41  Identities=24%  Similarity=0.258  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA  297 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lra  297 (318)
                      |..-|.+|.+|..-|..|..++..++.+++.|..||..||.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            55668899999999999999999999999999999999874

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.54  E-value=1.9  Score=34.44  Aligned_cols=16  Identities=13%  Similarity=0.436  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q 021065          296 KADIETLRAKLYMFIE  311 (318)
Q Consensus       296 rael~~Lr~kl~~~e~  311 (318)
                      .+++..|..||..+|+
T Consensus        85 E~ev~~L~RriqllEE  100 (101)
T 3u1c_A           85 ESEVASLNRRIQLVEE  100 (101)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcc
Confidence            4477778888877775

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=93.35  E-value=0.23  Score=36.67  Aligned_cols=41  Identities=12%  Similarity=0.159  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          275 LKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       275 ~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      ..+...|..++..|..+|..|+.++..|+..+..+..+|.-
T Consensus        22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e   62 (63)
T 1ci6_A           22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45566777788888999999999999999999998888754

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=93.18  E-value=0.84  Score=36.04  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          282 NQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       282 ~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      .+++..|+.||..|+.+|..|...+..+..++..
T Consensus        42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~   75 (87)
T 1hjb_A           42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555554443

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=93.07  E-value=0.5  Score=38.45  Aligned_cols=47  Identities=21%  Similarity=0.239  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLK-------GLTDVNQKYDESAVNNRILKADIETLR  303 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~-------~l~~L~qk~~~l~~EN~~Lrael~~Lr  303 (318)
                      .-+||.+++.|+.||..|+.       ++..|..++..|..||..|+.+-+-.+
T Consensus        39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~   92 (104)
T 3s9g_A           39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR   92 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34577777777777777666       444555555555555555555544433

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=92.99  E-value=0.65  Score=40.30  Aligned_cols=55  Identities=13%  Similarity=-0.072  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      ..+.+-..-+..|+.|...|..++..+..++..+..||..|-.+..  ..+-+.++.
T Consensus        89 eel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM--~rk~qEAe~  143 (152)
T 3a7p_A           89 EVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL--KKTEKETEA  143 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            3334444556777778888888888888888888888877755543  333344443

>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}

Probab=92.99  E-value=0.39  Score=43.49  Aligned_cols=48  Identities=17%  Similarity=0.203  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065          267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG  318 (318)
Q Consensus       267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~  318 (318)
                      --.||..|..++..+..++..+..+|..|+.    |-..++.+-++|.+++|
T Consensus       113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke----Lae~~q~la~vi~~l~~  160 (209)
T 2wvr_A          113 ALKENEKLHKEIEQKDNEIARLKKENKELAE----VAEHVQYMAELIERLNG  160 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence            3458889999999999999999999988876    44555666666666665

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=92.99  E-value=0.86  Score=35.42  Aligned_cols=56  Identities=20%  Similarity=0.249  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          259 ELETQAGQLRAEHSSLLKGL-------TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l-------~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      .+-.+|+.|-.||.+|...-       .+|..++..|..|+..|+.++..++.-...++..|+
T Consensus         6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~   68 (77)
T 2w83_C            6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNR   68 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777777766443       355566777777777777777666655554444443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=91.88  E-value=0.47  Score=34.50  Aligned_cols=38  Identities=13%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      ..+..|..++..+..+|..|+.++..|+..+..+..+|
T Consensus        22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667777888888899999999999999888887765

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.77  E-value=1.7  Score=47.51  Aligned_cols=31  Identities=23%  Similarity=0.227  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          281 VNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       281 L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      |+++...|..||..|++++.+|...+...++
T Consensus      1021 L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A         1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345556777888888888888866665554

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=91.65  E-value=0.52  Score=34.64  Aligned_cols=39  Identities=13%  Similarity=0.080  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      ..+..|..++..|..+|..|+.++..|+..+..+..++.
T Consensus        23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~   61 (63)
T 2wt7_A           23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888889999999999999999999999988875

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.59  E-value=4  Score=32.30  Aligned_cols=15  Identities=20%  Similarity=0.468  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHH
Q 021065          297 ADIETLRAKLYMFIE  311 (318)
Q Consensus       297 ael~~Lr~kl~~~e~  311 (318)
                      +++..|..||..+|+
T Consensus        86 ~evasLnRriqllEE  100 (101)
T 3u59_A           86 AEVASLNRRIQLVEE  100 (101)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcc
Confidence            356666666666654

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=91.59  E-value=1.5  Score=33.87  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      ..+.+++..|..||..|+.+|..|+..|..|..++..
T Consensus        39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q   75 (78)
T 1gu4_A           39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566667777777777777777777777666644

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=91.46  E-value=2.2  Score=33.21  Aligned_cols=64  Identities=14%  Similarity=0.169  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       251 ~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      +|=+..+..-..+++.|+.-...|..--+.|..-+..+..|-..|...+..|+.|...+++.+.
T Consensus        14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~   77 (78)
T 3iv1_A           14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445667777788888888888888887888888888999999999999999999999988764

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=90.42  E-value=1.1  Score=31.23  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      +..||.+|..|+.||..|+++.-.-..-+.       -|..++..||.|+
T Consensus         5 vaqlenevaslenenetlkkknlhkkdlia-------ylekeianlrkki   47 (49)
T 3he5_A            5 VAQLENEVASLENENETLKKKNLHKKDLIA-------YLEKEIANLRKKI   47 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccHHHHHhcccHHHHHH-------HHHHHHHHHHHHh
Confidence            567889999999999988877532222222       3455666666655

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.37  E-value=1.8  Score=34.92  Aligned_cols=50  Identities=20%  Similarity=0.259  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      +..|+.++.....+...|..++..-+.+...++.++..+..+++.|.+.|
T Consensus        14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL   63 (97)
T 2eqb_B           14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   63 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444555555555555554443

>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}

Probab=90.19  E-value=3.6  Score=30.36  Aligned_cols=62  Identities=16%  Similarity=0.154  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      |..-+.+||.++..++.-...+..++..+.-.+..+..++..=+..++.|..|+..++.+++
T Consensus         4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~l~   65 (65)
T 3m0d_C            4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQTLA   65 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhC
Confidence            34567778888887777666666666666666666655555557788999999999988763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.18  E-value=3  Score=41.02  Aligned_cols=24  Identities=13%  Similarity=0.058  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          290 VNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       290 ~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      ..-.+|++++..++++++.+++-+
T Consensus       558 ~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          558 AKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444555555555555555443

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=90.05  E-value=1.5  Score=34.16  Aligned_cols=45  Identities=13%  Similarity=0.070  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       267 L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      --.||..|..++..+..++..+..||+.|+.=+...+.-+.++++
T Consensus        32 aL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~   76 (79)
T 2zxx_A           32 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345899999999999999999999999987655554444444433

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=90.01  E-value=0.35  Score=32.02  Aligned_cols=27  Identities=15%  Similarity=0.313  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQ  283 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~q  283 (318)
                      +..||.+|+.|-.+|..|..++..|+.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            567888888888888888777776553

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=89.88  E-value=0.55  Score=35.70  Aligned_cols=36  Identities=14%  Similarity=0.290  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYM  308 (318)
Q Consensus       273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~  308 (318)
                      .|..++..|......+..||..|+.++..|+.++..
T Consensus        33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~   68 (70)
T 1gd2_E           33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555556778888888888888877764

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=89.50  E-value=2.2  Score=37.48  Aligned_cols=55  Identities=22%  Similarity=0.204  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE  300 (318)
Q Consensus       244 ESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~  300 (318)
                      |+=---|.||++  .+|...+..++..+..|..++..|......|..+...|.+++.
T Consensus        25 EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~   79 (168)
T 3o0z_A           25 ESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE   79 (168)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555654  5555555555555555555555555554444444444444433

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=89.23  E-value=2.1  Score=32.77  Aligned_cols=53  Identities=13%  Similarity=0.338  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE----TLRAKLYMFIE  311 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~----~Lr~kl~~~e~  311 (318)
                      ++..+++.++.+|+.|..++..+.+.+..-..+-..++.++.    .|--||..+.+
T Consensus         4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~e   60 (72)
T 3cve_A            4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTE   60 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            566778888888888888888888887777666665555544    34444444443

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=89.16  E-value=0.52  Score=31.34  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVN  282 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~  282 (318)
                      ++..||.+|+.|-.+|+.|..++..|+
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk   28 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLK   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            467788888888877777777766554

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=89.16  E-value=8.9  Score=33.19  Aligned_cols=12  Identities=17%  Similarity=0.111  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHHH
Q 021065          270 EHSSLLKGLTDV  281 (318)
Q Consensus       270 EN~~L~~~l~~L  281 (318)
                      +...|..++.++
T Consensus        76 El~~l~~ki~dL   87 (152)
T 3a7p_A           76 ELKSKEQEIRRL   87 (152)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=89.13  E-value=0.49  Score=30.23  Aligned_cols=25  Identities=36%  Similarity=0.412  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          282 NQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       282 ~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      +.-+..++.||..|++.+++|-+|+
T Consensus         5 nallasleaenkqlkakveellakv   29 (31)
T 1p9i_A            5 NALLASLEAENKQLKAKVEELLAKV   29 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445678888999999999888876

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=89.13  E-value=2.2  Score=31.37  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=27.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL  275 (318)
Q Consensus       239 ~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~  275 (318)
                      .-+||.++|++|.|=+..|+...+-...-..||..|+
T Consensus         6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr   42 (63)
T 2c9l_Y            6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR   42 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence            3579999999999988887777665555555666554

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=89.11  E-value=2.1  Score=43.66  Aligned_cols=42  Identities=10%  Similarity=0.053  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       273 ~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      .|++++..|+.+++.....-++|+..|++++.+++.||--|.
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888888877777788999999999999999997663

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.93  E-value=2.7  Score=37.55  Aligned_cols=53  Identities=23%  Similarity=0.248  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      +..|+.++..|+..+..|..++..|.+....++...|.+..-++.+..|+..+
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a  142 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA  142 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            55556666666666666666666666666666666666666666666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.87  E-value=3.2  Score=40.80  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      ..++.+.+.++.+++.+.++++..++++..+..|...|+.+++..+.++..+
T Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l  563 (597)
T 3oja_B          512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL  563 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHH
Confidence            3444444444555555555555555555555555555544444444444433

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=88.83  E-value=0.76  Score=30.90  Aligned_cols=30  Identities=13%  Similarity=0.295  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY  285 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~  285 (318)
                      ++..||.+|+.|..+|+.|..++..|+..+
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll   31 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN   31 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            467788888888888888877777665443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=88.64  E-value=5.6  Score=31.95  Aligned_cols=77  Identities=16%  Similarity=0.099  Sum_probs=60.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          240 LSNRESARRSRRRKQAHLNELETQAGQLR---AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       240 lsNRESArRSR~RKk~~l~eLE~qV~~L~---~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      ..|-.+|-..=..|+..+++|...+.+++   ..+.-|..++......|..-...-..|..+.+.|...|..+..-+.++
T Consensus         8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L   87 (94)
T 3jsv_C            8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL   87 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34556777777789999999999888888   677779999999999999888888888888888888887777665554

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=88.59  E-value=0.35  Score=44.98  Aligned_cols=39  Identities=23%  Similarity=0.295  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL  295 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~L  295 (318)
                      +.+|+.++..|...|..|...+..+++++..|..|+..|
T Consensus        56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL   94 (251)
T 3m9b_A           56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   94 (251)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444555555555555555555554444444443333333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=88.55  E-value=2.3  Score=35.51  Aligned_cols=50  Identities=16%  Similarity=0.269  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY  307 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~  307 (318)
                      ..|+.+..+-+...++|..+|..|+++++.+..|-..||.+.+.|..++.
T Consensus        60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~  109 (121)
T 3mq7_A           60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA  109 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence            34444444444556667777777777777777777777777777776654

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=88.51  E-value=2.3  Score=29.96  Aligned_cols=46  Identities=13%  Similarity=0.127  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       270 EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      .|.-|++++..|......++.+...|..-+..||..+..+|..|..
T Consensus         4 rnaylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas   49 (52)
T 3he5_B            4 RNAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS   49 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hhHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            4566677777777666777777777888888888888888887764

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.43  E-value=9.2  Score=34.06  Aligned_cols=54  Identities=15%  Similarity=-0.013  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI  312 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~  312 (318)
                      +...++..|+.+...|+.....+..++..|+..|.-|......+...+..+|..
T Consensus        85 e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~k  138 (189)
T 2v71_A           85 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQR  138 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHH
Confidence            334456677777777777777777777777777777766666666655555543

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=88.42  E-value=1.5  Score=33.84  Aligned_cols=49  Identities=24%  Similarity=0.126  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      ++|.+||.++..++.-...|...+..-.+++..       |+.++..|..|++.++
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~-------L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGAR-------NAELIRHLLEDLGKVR   62 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence            355666666666666666665555554444444       4555555555554444

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=88.41  E-value=0.55  Score=34.27  Aligned_cols=38  Identities=13%  Similarity=0.195  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          276 KGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      ..+..|..++..|..+|..|+.++..|+..+..|..+|
T Consensus        22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l   59 (62)
T 1jnm_A           22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV   59 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777788888888888888888888887776655

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=88.27  E-value=7.2  Score=34.24  Aligned_cols=70  Identities=13%  Similarity=0.153  Sum_probs=41.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       234 KR~RR~lsNRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      |-...+..-=+.=|+.|.+-.+.+.+|+.++..|+.|...++..       +..+..+|+.|...+..|......+|
T Consensus        69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~-------~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN-------LEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33344444455556666666666667776666666555555444       44566777777666666665544444

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=88.09  E-value=2.5  Score=32.28  Aligned_cols=59  Identities=10%  Similarity=0.075  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEI  312 (318)
Q Consensus       254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~  312 (318)
                      ...++.++.++...+..+..+..++..|+.++..++.+=..+..++.....+|..++..
T Consensus        19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~   77 (81)
T 1ic2_A           19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666666666666677777777777777777777777777777776666543

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=87.82  E-value=4.4  Score=31.95  Aligned_cols=30  Identities=7%  Similarity=0.280  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          278 LTDVNQKYDESAVNNRILKADIETLRAKLY  307 (318)
Q Consensus       278 l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~  307 (318)
                      +..|+.++..+..+|..|..++..|+..+.
T Consensus        58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~   87 (93)
T 3s4r_A           58 MRELRRQVDQLTNDKARVEVERDNLAEDIM   87 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555544443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=87.74  E-value=10  Score=31.10  Aligned_cols=55  Identities=24%  Similarity=0.276  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      .+..|+.++..|+..|..|...+.+|.+....++...|..-.-++.+..|+..+=
T Consensus        36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ai   90 (111)
T 2v66_B           36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAI   90 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3667888888888888888888888888888888888888888888888876653

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=87.64  E-value=1.4  Score=34.30  Aligned_cols=44  Identities=14%  Similarity=0.286  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET  301 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~  301 (318)
                      +++..+++.++.+|+.|..++..+.+.+..-..+-..++.++..
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~   52 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGR   52 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777777777777777777777666555555554433

>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}

Probab=87.63  E-value=0.24  Score=35.39  Aligned_cols=34  Identities=15%  Similarity=0.076  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          282 NQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       282 ~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      ..-...++.+|..|..++..|..-+..+|.-|.|
T Consensus        23 enivarlendnanlekdianlekdianlerdvar   56 (56)
T 3he4_A           23 ENIVARLENDNANLEKDIANLEKDIANLERDVAR   56 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcC
Confidence            3344557788888888888888888888887764

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=87.12  E-value=2  Score=30.65  Aligned_cols=38  Identities=16%  Similarity=0.087  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD  298 (318)
Q Consensus       261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae  298 (318)
                      +.++..|+.-|..|..+++.|...+..++.|+.+|++=
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L   40 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL   40 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            56788899999999999999988888888887777653

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=86.90  E-value=12  Score=30.84  Aligned_cols=75  Identities=16%  Similarity=0.120  Sum_probs=57.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          241 SNRESARRSRRRKQAHLNELETQAGQLRA---EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       241 sNRESArRSR~RKk~~l~eLE~qV~~L~~---EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      .|=.+|-..=..|+..+++|..++.+++.   ...-|..++......|..-...-..|..+.+.|..+|..+..-+.+
T Consensus        31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~  108 (110)
T 2v4h_A           31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK  108 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            34456666777789999999999888888   7777888998888888877777777777777777777776665544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=86.70  E-value=6.8  Score=42.81  Aligned_cols=59  Identities=14%  Similarity=0.050  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA----VNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~----~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      .+..|+.+++.|+.+.+.+.++...+.+++..+.    ..-..|+.+...|+..+..+|..|+
T Consensus       985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A          985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444433222    2233345555555555555554443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=86.54  E-value=3.5  Score=34.37  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE  300 (318)
Q Consensus       263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~  300 (318)
                      +|+.|+.|+..|..+|.++..++..|..+|..|..++.
T Consensus        72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~  109 (121)
T 3mq7_A           72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA  109 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence            46666666666666666666666666677766666553

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=86.46  E-value=4  Score=36.52  Aligned_cols=44  Identities=7%  Similarity=0.078  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021065          275 LKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGENG  318 (318)
Q Consensus       275 ~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~~  318 (318)
                      ..++..|++++..+..+-+.+..++..-+.-+...++++.-+||
T Consensus        40 ~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTG   83 (190)
T 4emc_A           40 ATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCN   83 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccC
Confidence            33333333444444443344444444444555566666666665

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=86.32  E-value=4.9  Score=31.32  Aligned_cols=47  Identities=15%  Similarity=0.247  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  302 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L  302 (318)
                      -+.+|..++..|+.|...|+.+++.+..++..+....+.+-.++..+
T Consensus        21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R   67 (83)
T 2xdj_A           21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667777777777777777777777777777766666665555433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=86.08  E-value=5.3  Score=43.65  Aligned_cols=28  Identities=14%  Similarity=0.038  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          284 KYDESAVNNRILKADIETLRAKLYMFIE  311 (318)
Q Consensus       284 k~~~l~~EN~~Lrael~~Lr~kl~~~e~  311 (318)
                      ++..+..+...|+.++..|..++..+++
T Consensus       914 ~l~~l~~~~~~Le~~l~ele~elee~ee  941 (1184)
T 1i84_S          914 MRVRLAAKKQELEEILHEMEARIEEEEE  941 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444433

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=86.07  E-value=0.95  Score=30.42  Aligned_cols=29  Identities=14%  Similarity=0.308  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQK  284 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk  284 (318)
                      ++..||.+|+.|..+|+.|..++..|+.-
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l   30 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKE   30 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46778888888888888887777765543

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=86.01  E-value=1  Score=29.88  Aligned_cols=27  Identities=4%  Similarity=0.062  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVN  282 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~  282 (318)
                      ++..||.+|+.|-.+|..|..++..|+
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk   28 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIX   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            467788888888888877777776654

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=85.72  E-value=6.1  Score=32.48  Aligned_cols=38  Identities=16%  Similarity=0.015  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD  298 (318)
Q Consensus       261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae  298 (318)
                      -..+..|+.+...|+.....+...+..|+..|.-|...
T Consensus        34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~   71 (111)
T 2v66_B           34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA   71 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            34455566666666666666666666666666665433

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=85.54  E-value=2.2  Score=31.27  Aligned_cols=39  Identities=15%  Similarity=0.072  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD  298 (318)
Q Consensus       260 LE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrae  298 (318)
                      -|.++..|+.-|-+|..+++.|..++...+.|+.+|++=
T Consensus         9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L   47 (58)
T 3a2a_A            9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL   47 (58)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778888888888888888888888877777777653

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=85.52  E-value=4  Score=31.47  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      ++||.+|..|+.-...|..++..|..+|...   ...||++|..|..+|+...
T Consensus         3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~~~~~   52 (74)
T 3swf_A            3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFLKPLI   52 (74)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccC
Confidence            4678888888877777777777766655543   4578888888888887644

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=85.37  E-value=2.6  Score=29.24  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          279 TDVNQKYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       279 ~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      .+|..+...++..|.+|..++.+|...-.|+..++
T Consensus         6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A            6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            34444444455555555555555555555555444

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=85.09  E-value=4  Score=29.25  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          258 NELETQAGQLRAEHSSLLKGLTDVNQ  283 (318)
Q Consensus       258 ~eLE~qV~~L~~EN~~L~~~l~~L~q  283 (318)
                      .+|..++..|...|..|...+...++
T Consensus        12 ~~l~~~l~~L~~rN~rL~~~L~~AR~   37 (51)
T 3m91_A           12 HQLEARIDSLAARNSKLMETLKEARQ   37 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555544444333

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=84.89  E-value=9  Score=31.21  Aligned_cols=81  Identities=16%  Similarity=0.264  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          230 SVDDKRARRMLSNRESARRSRRRK-Q-AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLY  307 (318)
Q Consensus       230 ~~e~KR~RR~lsNRESArRSR~RK-k-~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~  307 (318)
                      ..++|=.|-|++|   |+-=-.|- . =+++-|...+..++....+|.+++.+..+.+..+......|+.++..|+..|+
T Consensus         6 EvEEKyrKAMVsn---AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~   82 (103)
T 4h22_A            6 EVEEKYKKAMVSN---AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK   82 (103)
T ss_dssp             --CCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777788887   22211111 1 12344445555555555566666666556666666666666666666666665


Q ss_pred             HHHHhh
Q 021065          308 MFIEIF  313 (318)
Q Consensus       308 ~~e~~v  313 (318)
                      .=+++|
T Consensus        83 qRD~LI   88 (103)
T 4h22_A           83 QREEML   88 (103)
T ss_dssp             TTTSCC
T ss_pred             HHHHHH
Confidence            544443

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=84.83  E-value=4.1  Score=31.61  Aligned_cols=52  Identities=13%  Similarity=0.045  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       265 ~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      +.|..-...|..++..|.-+...+..|+..+++-...|+.|++.+|+.++|+
T Consensus        26 NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr~   77 (77)
T 2w83_C           26 NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRKA   77 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3444455568888888888888889999999999999999999999988874

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=84.76  E-value=2.4  Score=32.57  Aligned_cols=50  Identities=16%  Similarity=0.072  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      +|+.++..|+...+-+-..+..|+.-+       .....+|..|+.+|+.+.+.++.
T Consensus        11 ~le~Ri~~LE~klAfqE~tIeeLn~~v-------~~Qq~~Id~L~~ql~~L~~rl~~   60 (78)
T 3efg_A           11 ELEARLVELETRLSFQEQALTELSEAL-------ADARLTGARNAELIRHLLEDLGK   60 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555554444444433322       22345666777777766666553

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=84.75  E-value=0.078  Score=42.41  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHH
Q 021065          231 VDDKRARRMLSNRESARRSRRRKQA  255 (318)
Q Consensus       231 ~e~KR~RR~lsNRESArRSR~RKk~  255 (318)
                      .-.|.+||..+||.+|+++|+||..
T Consensus        63 ~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           63 ALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3568889999999999999999853

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=84.67  E-value=2.1  Score=38.29  Aligned_cols=48  Identities=19%  Similarity=0.255  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFI  310 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e  310 (318)
                      +|+.-..-|..|..||..|..++..       ...|+..|+.++..|+..+...+
T Consensus        14 ql~~ad~LV~~L~~En~~L~~ql~~-------k~~ei~~L~~ql~sl~~~~~~~~   61 (190)
T 4emc_A           14 QIDSADLLVANLVNENFVLSEKLDT-------KATEIKQLQKQIDSLNAQVKELK   61 (190)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhh
Confidence            3334444455555555555555554       45555555555555555554433

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=84.64  E-value=10  Score=29.40  Aligned_cols=52  Identities=21%  Similarity=0.293  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      ....+|+.+...|..+...|..++.++..++..|......|..++..|..+|
T Consensus        35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl   86 (89)
T 3bas_A           35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345677777777777777777766666666666666666666666665554

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=84.53  E-value=8.4  Score=29.26  Aligned_cols=8  Identities=0%  Similarity=0.015  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q 021065          292 NRILKADI  299 (318)
Q Consensus       292 N~~Lrael  299 (318)
                      +..|..++
T Consensus        50 iq~lE~el   57 (81)
T 1ic2_A           50 LKGTEDEL   57 (81)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=84.52  E-value=1.3  Score=29.17  Aligned_cols=26  Identities=8%  Similarity=0.194  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVN  282 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~  282 (318)
                      +..||.+|+.|-.+|..|..++..|+
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk   27 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIK   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            56788888888888877777776654

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=84.47  E-value=1.2  Score=29.55  Aligned_cols=28  Identities=7%  Similarity=0.285  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQ  283 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q  283 (318)
                      +|..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4677888898888888888887776653

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=84.46  E-value=5.5  Score=27.73  Aligned_cols=30  Identities=10%  Similarity=-0.009  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021065          284 KYDESAVNNRILKADIETLRAKLYMFIEIF  313 (318)
Q Consensus       284 k~~~l~~EN~~Lrael~~Lr~kl~~~e~~v  313 (318)
                      +...+++||..|+...-.-..-+..+|..|
T Consensus        11 evaslenenetlkkknlhkkdliaylekei   40 (49)
T 3he5_A           11 EVASLENENETLKKKNLHKKDLIAYLEKEI   40 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccHHHHHhcccHHHHHHHHHHHH
Confidence            344455555555544333333333444433

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=84.32  E-value=3.3  Score=40.26  Aligned_cols=52  Identities=15%  Similarity=0.300  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       253 Kk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      .+..+.+|+.++..|+.+...|..++.++.+++...+..-+.|--++.+|+.
T Consensus         8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg   59 (403)
T 4etp_A            8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG   59 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3456677777777777777777777777777777777777777666666654

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=83.96  E-value=6.5  Score=30.32  Aligned_cols=59  Identities=14%  Similarity=0.187  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021065          254 QAHLNELETQAGQLRAEHSSLLKGLTDV------NQKYDESAVNNRILKADIETLRAKLYMFIEI  312 (318)
Q Consensus       254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L------~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~  312 (318)
                      +..|+.|+.++..|+.+...|..++.+-      -.++..+..+-..|..++..+-.+=-.||++
T Consensus        21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~   85 (89)
T 2lw1_A           21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL   85 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4568999999999999999999998742      2466777777788888888888877777665

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=83.94  E-value=3.7  Score=29.44  Aligned_cols=36  Identities=19%  Similarity=0.178  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          281 VNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       281 L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      |..+...|...|..|-.-+..-|.+|..+.+.|.++
T Consensus        14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L   49 (51)
T 3m91_A           14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333334444444444444444444444444444443

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=83.93  E-value=14  Score=28.95  Aligned_cols=58  Identities=16%  Similarity=0.307  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMF  309 (318)
Q Consensus       242 NRESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~  309 (318)
                      |-+||-.+=-|-|+-   +..++...+..|..+.++|.+       .+..|+.|..++..|+.++..+
T Consensus        14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~e-------ae~rn~eL~~e~~~l~~~~eel   71 (81)
T 1wt6_A           14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLRE-------AEARNRDLEAHVRQLQERMELL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            666777666666553   344566667777777766665       4555555555555555555553

>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}

Probab=83.84  E-value=4.5  Score=29.57  Aligned_cols=43  Identities=12%  Similarity=0.128  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021065          274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGE  316 (318)
Q Consensus       274 L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~  316 (318)
                      |...+-.|+-+.+.|..||..|+.-+++=+..-+.+|.+|.++
T Consensus         8 lVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~   50 (56)
T 2w6b_A            8 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV   50 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555566666666666666666667777777664

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=83.71  E-value=1.4  Score=32.49  Aligned_cols=32  Identities=16%  Similarity=0.263  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          276 KGLTDVNQKYDESAVNNRILKADIETLRAKLY  307 (318)
Q Consensus       276 ~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~  307 (318)
                      .++..|..++..|..+|..|+.++..|+..|.
T Consensus        30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55666777777788888888888888887653

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=83.70  E-value=2.9  Score=50.70  Aligned_cols=59  Identities=17%  Similarity=0.246  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLGEN  317 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~~~  317 (318)
                      ..+.+++.++.+.+.|..++..|+.+|..+..|-..|+.+++....||..++..|..+.
T Consensus      2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~ 2083 (3245)
T 3vkg_A         2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLN 2083 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33444555666667777888888888899999999999999999999999999987654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=83.61  E-value=7.6  Score=35.09  Aligned_cols=72  Identities=10%  Similarity=0.048  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA--VNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       243 RESArRSR~RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~--~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      ....+..-...+..+.+++.++..++.+...+..++...+.+.....  -|=..|..++..+..++..+|+.+.
T Consensus        41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eil  114 (256)
T 3na7_A           41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIE  114 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555666666666666666666666665555543321  1112334455555555555555443

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=83.51  E-value=1.4  Score=29.24  Aligned_cols=28  Identities=7%  Similarity=0.306  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQ  283 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q  283 (318)
                      ++..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            5677888888888888888777776543

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=83.40  E-value=1.5  Score=29.18  Aligned_cols=28  Identities=11%  Similarity=0.269  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQ  283 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~q  283 (318)
                      ++..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~   29 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4677888888888888877777766543

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=83.39  E-value=5.1  Score=28.20  Aligned_cols=44  Identities=18%  Similarity=0.326  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  305 (318)
Q Consensus       259 eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k  305 (318)
                      +||.+|+.|+.-...|..++..|-.+|...   ...||+++..|..+
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~ss---q~KlKqRit~lE~~   45 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYNAT---QMKMKQRLSQLESQ   45 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence            577788877777777766666665555443   34556665555543

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=83.00  E-value=2  Score=30.81  Aligned_cols=19  Identities=16%  Similarity=0.169  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021065          262 TQAGQLRAEHSSLLKGLTD  280 (318)
Q Consensus       262 ~qV~~L~~EN~~L~~~l~~  280 (318)
                      ..|+.|+.||+.|+.++..
T Consensus        19 ~d~eaLk~E~~eLk~k~~~   37 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEA   37 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            4455555555555444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=82.78  E-value=16  Score=28.80  Aligned_cols=50  Identities=10%  Similarity=0.111  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  305 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k  305 (318)
                      ..+.++.++..++.++..+-.++..|+.++..+..+=..+..++..+..+
T Consensus        24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k   73 (101)
T 3u59_A           24 RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK   73 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555444444444444444333

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=82.73  E-value=4.3  Score=33.11  Aligned_cols=52  Identities=17%  Similarity=0.146  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       263 qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      +|..|+.....+...+..+++++.....+...||-.+..|..++..+.+.|+
T Consensus        31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~   82 (103)
T 4h22_A           31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK   82 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444445555555555555555555555555443

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=82.54  E-value=1.6  Score=33.21  Aligned_cols=7  Identities=14%  Similarity=0.363  Sum_probs=2.8

Q ss_pred             HHHHHHH
Q 021065          256 HLNELET  262 (318)
Q Consensus       256 ~l~eLE~  262 (318)
                      .+.+|..
T Consensus        20 ~f~~Lr~   26 (83)
T 1nkp_B           20 SFHSLRD   26 (83)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            3344433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=82.53  E-value=27  Score=31.37  Aligned_cols=49  Identities=10%  Similarity=0.186  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  305 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k  305 (318)
                      +..|..++..++.++..|..++..+..++..+..+-..++.++..++..
T Consensus        92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~  140 (256)
T 3na7_A           92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL  140 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555554444444444444444433333333333333333

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=82.51  E-value=1.5  Score=40.84  Aligned_cols=42  Identities=19%  Similarity=0.220  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  302 (318)
Q Consensus       261 E~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~L  302 (318)
                      +.++..|+.++..|..++..|...+..+..|...||.+++.|
T Consensus        53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL   94 (251)
T 3m9b_A           53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   94 (251)
T ss_dssp             CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444555554444444444444444444444444444333

>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*

Probab=81.82  E-value=5.4  Score=32.88  Aligned_cols=25  Identities=16%  Similarity=0.313  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLT  279 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~  279 (318)
                      .-+++|..++..|+.||..|++++.
T Consensus         8 ~t~EeLaaeL~kLqmENK~LKkkl~   32 (110)
T 2oa5_A            8 KTYEEMVKEVERLKLENKTLKQKVK   32 (110)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4579999999999999999999987

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=81.81  E-value=2  Score=28.35  Aligned_cols=26  Identities=8%  Similarity=0.084  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVN  282 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~  282 (318)
                      |..||.+|+.|-.+|..|..++..|+
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~   27 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNT   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            56788888888888877777776654

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=81.52  E-value=6  Score=30.36  Aligned_cols=50  Identities=16%  Similarity=0.253  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      .+|..-+.++..|+...+--.+-.+.|+-++-.+..||..|+.++..|.+
T Consensus        25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~   74 (75)
T 3a7o_A           25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK   74 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence            34555556666666666555566677888888899999999998887764

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=81.36  E-value=18  Score=28.60  Aligned_cols=49  Identities=4%  Similarity=0.095  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  305 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~k  305 (318)
                      .+.++.++..++.++..+-.++..|+.++..+..+=..+..++.....+
T Consensus        25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k   73 (101)
T 3u1c_A           25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS   73 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444333333

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=81.23  E-value=2.9  Score=28.14  Aligned_cols=29  Identities=17%  Similarity=0.192  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          268 RAEHSSLLKGLTDVNQKYDESAVNNRILK  296 (318)
Q Consensus       268 ~~EN~~L~~~l~~L~qk~~~l~~EN~~Lr  296 (318)
                      -.||.+|.+.++.-..++..|..||..|+
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~   34 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELA   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            46899999999999999999999998875

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=80.92  E-value=5.8  Score=32.84  Aligned_cols=48  Identities=21%  Similarity=0.341  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       252 RKk~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      .-+.++..|+.+|..|+.       +|..-+...+.+..||..|+.+++.|+...
T Consensus        37 E~q~~v~ql~~~i~~Le~-------eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~   84 (120)
T 3i00_A           37 ESQRVVLQLKGHVSELEA-------DLAEQQHLRQQAADDCEFLRAELDELRRQR   84 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334455555555555554       444445556678888999999998885443

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=80.47  E-value=16  Score=28.12  Aligned_cols=53  Identities=13%  Similarity=0.113  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       254 k~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      ...+..+...+..|+.+...++..+....+.|+.|..=.-.|-.+|.+.|.-|
T Consensus        27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL   79 (86)
T 1x8y_A           27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL   79 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45677888888889999999999999999999999988888999999988654

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=80.37  E-value=18  Score=27.96  Aligned_cols=59  Identities=14%  Similarity=0.095  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021065          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFL  314 (318)
Q Consensus       256 ~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~  314 (318)
                      .+...+.....|+..+..|..+..+|..++..+.-....|.+.-..|..+|..+++.|.
T Consensus        29 ~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           29 DLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44566667778888888888888888888888888888888888888888888887663

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=80.28  E-value=4.6  Score=39.50  Aligned_cols=50  Identities=14%  Similarity=0.187  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~  304 (318)
                      ..+.+|..+++.|+.++..+..++..+.+++...+.+.+.|--++.+|+.
T Consensus        10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g   59 (412)
T 3u06_A           10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD   59 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            34555555666666666666666666666666666666666666655543

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=80.14  E-value=3.2  Score=29.76  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          271 HSSLLKGLTDVNQKYDESAVNNRILKA  297 (318)
Q Consensus       271 N~~L~~~l~~L~qk~~~l~~EN~~Lra  297 (318)
                      ...|+.++.+|+.++..|..+|..|++
T Consensus        21 ~eaLk~E~~eLk~k~~~L~~~~~el~~   47 (53)
T 2yy0_A           21 IELLRLELAEMKEKYEAIVEENKKLKA   47 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444443333333

>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1

Probab=80.13  E-value=6.9  Score=28.31  Aligned_cols=50  Identities=18%  Similarity=0.237  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKL  306 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl  306 (318)
                      +.++...+..|+.+.+.++..+....++|+.|..=.-.|-.+|.+.|.-|
T Consensus         2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL   51 (59)
T 1gk6_A            2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL   51 (59)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34667778888888888888888888889988888888888998888544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	90.03
d1lrza1	65	Methicillin resistance protein FemA probable tRNA-	85.84
d2oa5a1	96	Uncharacterized protein BQLF2 {Murid herpesvirus 4	82.88

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.03  E-value=0.067  Score=39.48  Aligned_cols=28  Identities=25%  Similarity=0.338  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021065          232 DDKRARRMLSNRESARRSRRRKQAHLNE  259 (318)
Q Consensus       232 e~KR~RR~lsNRESArRSR~RKk~~l~e  259 (318)
                      -.+-.||.=+||.+|+++|+||....++
T Consensus        46 lirDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          46 LIRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            3577889999999999999999876543

>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Methicillin resistance protein FemA probable tRNA-binding arm
domain: Methicillin resistance protein FemA probable tRNA-binding arm
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.84  E-value=1.8  Score=30.69  Aligned_cols=60  Identities=12%  Similarity=0.126  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021065          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKLYMFIEIFLG  315 (318)
Q Consensus       255 ~~l~eLE~qV~~L~~EN~~L~~~l~~L~qk~~~l~~EN~~Lrael~~Lr~kl~~~e~~v~~  315 (318)
                      .|+..|+.+...|..+...+...|.. +..-....+.-+.|.+++.++..|+..+++.+..
T Consensus         3 eYl~~L~~~~~~L~~~i~k~~~~lek-nP~skK~~nk~~el~~Q~~s~~~ki~Ea~~li~k   62 (65)
T d1lrza1           3 EYIKELNEERDILNKDLNKALKDIEK-RPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEE   62 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999998888887777653 2222334455567899999999999999998764

>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}

class: Alpha and beta proteins (a+b)
fold: BLRF2-like
superfamily: BLRF2-like
family: BLRF2-like
domain: Uncharacterized protein BQLF2
species: Murid herpesvirus 4 [TaxId: 33708]

Probab=82.88  E-value=2.1  Score=32.56  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 021065          257 LNELETQAGQLRAEHSSLLKGLTD  280 (318)
Q Consensus       257 l~eLE~qV~~L~~EN~~L~~~l~~  280 (318)
                      +++|..++..|+.||..|++++..
T Consensus         4 ~EeLaaeL~rL~~ENk~LKkkl~~   27 (96)
T d2oa5a1           4 YEEMVKEVERLKLENKTLKQKVKS   27 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999875