Citrus Sinensis ID: 021074

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSEVCEKIFYVDLSQLVICCTHFKKSVMFSLPLRNYLCRPRKEISRSKGKSSEMK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHccccEEEEEccccccHHHHHHHccccccccEEEEEEEEccccEEEEEEcccccccHHHHHHHHcccccccccccHHHHHHHcccccccEEcccccccccccEEEEEEcccccccEEEEEccccccEEEEcHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccEEEEccccccccccccHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHccccEEEEccccEEEHHHHHHHHHccccccEEEEEEEcccccEEEEEEccccEccHHHHHHHHcccccccccccHHHHHHHHcccccccccHEEEccccccEEEEEcHHHHccccEEEcccccccEEEEcHHHHHHHHHHHccccEEEEEcccccccccccccHHHHcccccEEcccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccEEEEcccHHHHccccccHEEcccccccccc
Coil and Loop (DISEMBL)
MAYSKDQLLARLKDLQIEfsqyehpavMTVEAQAKYVgniggglsknlflkdkkHRFYIVSALADTKVDMKVLSQRlglgkgglrmapeeTMLEILKvplgsvtpfalvNESARDVALLLDKGFkaqercffhplsndmsislNTNDLDKFLKsigrdpayvdleanpavgkdqppdlaafvpsgstvlpdlpdpasavqsaggshvnannncKAATEkaikpakdvqnvkdksakavnpsssftdAEKFVEEILDRISAKLLSEVCEKIFYVDLSQLVICCTHFkksvmfslplrnylcrprkeisrskgkssemk
Flexible Loop (DISEMBL)
MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSaladtkvdmKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFhplsndmsisLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEkaikpakdvqnvkdksakavnpsssftdaeKFVEEILDRISAKLLSEVCEKIFYVDLSQLVICCTHFKksvmfslplrnylcrprkeisrskgkssemk
Low Complexity Region (SEG)
MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSEVCEKIFYVDLSQLVICCTHFKKSVMFSLPLRNYLCRPRKEISRSKGKSSEMK
Disordered region (IsUnstruct)
********LARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL************************************************************************************KFVEEILDRISAKLLSEVCEKIFYVDLSQLVICCTHFKKSVMFSLPLRNYLCR****************
Disordered Region (DISOPRED)
***SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL***********************************************************************************EKFVEEILDRISAKLLSEVCEKIFYVDLSQLVICCTHFKKSVMFSLPLRNYLC*****************
Disordered Region (DISEMBL)
MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDP***********VNANNNCKAATEKAIKPAKD******************TDAEKFVEEILDRISAKLLSEVCEKIFYVDLSQLVICCTHFKKSVMFSLPLRNYLCRPRK*************
Disordered Region (DISPRO)
*AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLP*****************************************************FTDAEKFVEEILDRISAKLLSEVCEKIFYVDLSQLVICCTHFKKSVMFSLPLRNYLCRPR**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSEVCEKIFYVDLSQLVICCTHFKKSVMFSLPLRNYLCRPRKEISRSKGKSSEMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q6NRL0	168	Prolyl-tRNA synthetase as	N/A	no	0.504	0.952	0.414	4e-26
A1A4Q2	171	Prolyl-tRNA synthetase as	yes	no	0.492	0.912	0.393	2e-25
A6NEY8	169	Putative prolyl-tRNA synt	yes	no	0.485	0.911	0.392	8e-25
Q9D820	169	Prolyl-tRNA synthetase as	yes	no	0.498	0.934	0.376	4e-24
Q9L4Q7	164	Prolyl-tRNA editing prote	yes	no	0.473	0.914	0.335	5e-16
Q6PFS2	184	Prolyl-tRNA synthetase as	yes	no	0.473	0.815	0.373	6e-15
Q8I5R7	746	Proline--tRNA ligase OS=P	yes	no	0.488	0.207	0.318	5e-14
O60155	716	Putative proline--tRNA li	yes	no	0.381	0.168	0.263	0.0009

>sp|Q6NRL0|PRXD1_XENLA Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Xenopus laevis GN=prorsd1p PE=2 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 95/164 (57%), Gaps = 4/164 (2%)

Query: 5   KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSAL 63
           + +LLA L +L I     EHP V TVE    +V ++GG  SKNLFLKDKK +  ++VS L
Sbjct: 6   RQELLAYLHELDIRPVCAEHPEVFTVEEMMPHVQHLGGAHSKNLFLKDKKKKGLWLVSVL 65

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            D +V++  L+++L LG G LR A E +MLE LKV  G  TP AL  +   DV  +LD  
Sbjct: 66  HDRQVNLNDLAKKLNLGSGNLRFADEASMLEKLKVGQGCATPLALFCDRG-DVQFVLDAQ 124

Query: 124 F--KAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
           F     ER +FHP++N  ++ +   +   FLK  G DP  +  +
Sbjct: 125 FLEGGYERVYFHPMTNAATLGMTPQEFVTFLKKTGHDPIIIHFD 168

Xenopus laevis (taxid: 8355)

>sp|A1A4Q2|PRXD1_BOVIN Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Bos taurus GN=PRORSD1 PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 4/160 (2%)

Query: 11  RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
           RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct: 13  RLAALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQIN 72

Query: 70  MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQ 127
           +  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct: 73  LNDLAKQLGVGSGNLRFADEAAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query: 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
           E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ + N
Sbjct: 132 EKVYFHPMTNAATMGLSPEDFLTFVKNTGHDPIILNFDKN 171

Bos taurus (taxid: 9913)

>sp|A6NEY8|PRXD1_HUMAN Putative prolyl-tRNA synthetase associated domain-containing protein 1 OS=Homo sapiens GN=PRORSD1P PE=5 SV=3

 Score =  114 bits (286), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 4/158 (2%)

Query: 11  RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
           RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct: 13  RLGALAIHTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHDRQIN 72

Query: 70  MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQ 127
           +  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct: 73  LNELAKQLGVGSGNLRFADETAMLEKLKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGH 131

Query: 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
           E+ +FHP++N  ++ L+  D   F+K  G DP  ++ +
Sbjct: 132 EKVYFHPMTNAATMGLSPEDFLTFVKMTGHDPIILNFD 169

Homo sapiens (taxid: 9606)

>sp|Q9D820|PRXD1_MOUSE Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Mus musculus GN=Prorsd1 PE=2 SV=1

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 4/162 (2%)

Query: 7   QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALAD 65
           +L  RL  L I     EHP V T+E    ++ ++ G  SKNLFLKDKK + +++V+ L D
Sbjct: 9   ELEQRLGALAIRTEVVEHPEVFTIEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHD 68

Query: 66  TKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF- 124
            ++++  L ++LG+G G LR A E  MLE LKV  G  TP +L  +   DV  +LD  F 
Sbjct: 69  RQINLNDLGKQLGVGSGNLRFADETAMLEKLKVGQGCATPLSLFCDDG-DVKFVLDSAFL 127

Query: 125 -KAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
               E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ +
Sbjct: 128 EGGHEKVYFHPMTNAATMGLSPEDFLIFVKATGHDPIILNFD 169

Mus musculus (taxid: 10090)

>sp|Q9L4Q7|PROX_CLOSD Prolyl-tRNA editing protein ProX OS=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) GN=proX PE=1 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKY-VGNIGGGLSKNLFLKDKKHR-FYIVS 61
           +K  ++A+L +L+I ++  EH  V T+E   K  + N+   + KNLFL+D K R  Y+V 
Sbjct: 5   AKQAVIAKLDELKINYTLIEHDPVYTIEEMEKIDIENVDY-IVKNLFLRDAKGRQHYLVV 63

Query: 62  ALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLD 121
           A  D K+D+K L  ++G  K  L  A E+ + + LK+  G+V+PF ++N+   +V ++ D
Sbjct: 64  ADKDQKIDLKTLQDKIGSTK--LSFASEDRLQKYLKLTKGAVSPFGVLNDETAEVEVVFD 121

Query: 122 KGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIG 156
           K    +     HP  N  ++ L+  DL+K +K+ G
Sbjct: 122 KNLVGRSCVAVHPNDNSATVVLSYEDLEKIVKANG 156

Functions in trans to edit the amino acid moiety from incorrectly charged Ala-tRNA(Pro). Has weak activity on correctly charged tRNA(Ala), tRNA(Gly) as well as tRNA(Cys), tRNA(Met), tRNA(Pro), tRNA(Ser) and tRNA(Leu).

Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) (taxid: 499177)

>sp|Q6PFS2|PRXD1_DANRE Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Danio rerio GN=Prorsd1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 8/158 (5%)

Query: 12  LKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMK 71
           LK L IE +  EHP V TVE    +V ++ G ++KNLFLKDKK R ++V    D  + + 
Sbjct: 31  LKRLNIETTCIEHPEVFTVEEMMPHVSHLSGVVTKNLFLKDKKRRVFLVCVRHDRPLALG 90

Query: 72  VLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDK----GFKAQ 127
            LS+R  LG   LR+A E  +LE L+V  G VTP AL  ++ R V  +LD+    G    
Sbjct: 91  ELSRR--LGAPNLRLAEERLLLEKLRVRQGCVTPLALFLDTERSVTAVLDRELTHGGHTH 148

Query: 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
             C  HP++N  ++ +   DL +FL+     P  +  +
Sbjct: 149 IHC--HPMTNSATMGITPADLLRFLEETQHTPVILSFD 184

Danio rerio (taxid: 7955)

>sp|Q8I5R7|SYP_PLAF7 Proline--tRNA ligase OS=Plasmodium falciparum (isolate 3D7) GN=proRS PE=1 SV=1

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 2/157 (1%)

Query: 8   LLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTK 67
           L   LK+L I F + +H    T++   +        + KNLFLKDKK  ++++  L +  
Sbjct: 22  LFKELKELNINFKEVKHGLAATIKDLLEMNLENSTNILKNLFLKDKKKNYFLICTLNNKT 81

Query: 68  VDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQ 127
           VD+K LS  L      LR   E  +  IL +  G ++P A+ N+    V L  D+  K  
Sbjct: 82  VDLKNLSNILKTN--NLRFVDENNLNNILNIQPGCLSPLAIKNDKENIVKLYFDEEIKNM 139

Query: 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 164
           +    HPL N  S+ + T D+ KF +S    P YV +
Sbjct: 140 QEVIIHPLHNYSSLYIKTQDVIKFCESFNHAPEYVQI 176

Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro) (By similarity). Functions in trans to edit the amino acid moiety from incorrectly charged Ala-tRNA(Pro). Has no activity on correctly charged Pro-tRNA(Pro) or Ala-tRNA(Ala).

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|O60155|YHY6_SCHPO Putative proline--tRNA ligase C19C7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19C7.06 PE=3 SV=1

 Score = 44.7 bits (104), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 44  LSKNLFLKDKKHRF-----YIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKV 98
           L+K + LK K  +       I++AL  T     + ++ +G  +   RMA  + + E+  +
Sbjct: 47  LTKTIVLKPKTAKSQTVVPIILAALETTSTPSGIAAKAVGSKEA--RMAAADLVEEVFGI 104

Query: 99  PLGSVTPFALVNESARDVALLLDKGFKAQERCF-FHPLSNDMSISLNTNDLDKFLKSIGR 157
           P   V  F++  E+A  V ++LD           FHP S+  ++ ++   +  +LKS+G 
Sbjct: 105 PPTDVGIFSVNKENASKVHVVLDAALIQHNGLLAFHPSSSAKTVFVSPAAVQTYLKSVGV 164

Query: 158 DPAYVDLEA 166
           +P  VD  A
Sbjct: 165 NPIIVDFSA 173

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
224084860	287	predicted protein [Populus trichocarpa]	0.839	0.926	0.715	1e-105
356515866	322	PREDICTED: uncharacterized protein LOC10	0.876	0.863	0.681	1e-103
359492751	320	PREDICTED: prolyl-tRNA synthetase associ	0.842	0.834	0.679	1e-100
255545452	321	conserved hypothetical protein [Ricinus	0.845	0.834	0.686	6e-99
449524730	323	PREDICTED: proline--tRNA ligase-like [Cu	0.835	0.820	0.651	5e-97
356552652	320	PREDICTED: prolyl-tRNA synthetase associ	0.842	0.834	0.660	5e-97
449449737	323	PREDICTED: prolyl-tRNA synthetase associ	0.835	0.820	0.651	6e-97
217075807	329	unknown [Medicago truncatula]	0.870	0.838	0.660	8e-94
147783581	610	hypothetical protein VITISV_014949 [Viti	0.804	0.418	0.671	1e-93
357461571	378	hypothetical protein MTR_3g072620 [Medic	0.870	0.730	0.660	2e-93

>gi|224084860|ref|XP_002307426.1| predicted protein [Populus trichocarpa] gi|222856875|gb|EEE94422.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/271 (71%), Positives = 220/271 (81%), Gaps = 5/271 (1%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M ++K QLLARLK+LQI FSQYEHP V+TVEAQAKYVG+ GGGLSKNLFLKDKK RFYIV
Sbjct: 1   MGFTKQQLLARLKELQINFSQYEHPTVLTVEAQAKYVGDKGGGLSKNLFLKDKKSRFYIV 60

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SALADTKVDMKVLSQRLGLGKGG+RMAPEE + EIL+VPLG VTPFALVNESAR V+LLL
Sbjct: 61  SALADTKVDMKVLSQRLGLGKGGIRMAPEEALGEILQVPLGCVTPFALVNESARHVSLLL 120

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           DKGF++QE CFFHPLSNDMSI+LN  DLDKFLKSIGRDP+Y+DLEANP VGKDQPPDLA+
Sbjct: 121 DKGFQSQEHCFFHPLSNDMSIALNACDLDKFLKSIGRDPSYIDLEANPTVGKDQPPDLAS 180

Query: 181 FVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDV-----QNVKDKSA 235
           FVPSGST+ PD PD A+ +Q    + +  N    AAT KA KP   +     QN KDK  
Sbjct: 181 FVPSGSTIQPDQPDKAAPLQDPTENSLPVNKKSVAATGKAAKPHTSMQNSSTQNSKDKPV 240

Query: 236 KAVNPSSSFTDAEKFVEEILDRISAKLLSEV 266
             V+  S F+D+  FVEEIL++ SA LLSEV
Sbjct: 241 NPVHQPSVFSDSGLFVEEILNKTSALLLSEV 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515866|ref|XP_003526618.1| PREDICTED: uncharacterized protein LOC100817904 [Glycine max]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/279 (68%), Positives = 222/279 (79%), Gaps = 1/279 (0%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M +SK+QLLARLK+LQ+ FSQYEHP V+TV+AQA+YVG++GGGLSKNLFLKDKK R YIV
Sbjct: 1   MGFSKEQLLARLKELQVPFSQYEHPVVLTVDAQAQYVGHLGGGLSKNLFLKDKKSRLYIV 60

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SALA TKVD+KVLSQRLGLGKGGLRMAPEE + E+L+VPLG VTPFALVNESARDV+LLL
Sbjct: 61  SALAGTKVDLKVLSQRLGLGKGGLRMAPEEALGEVLQVPLGCVTPFALVNESARDVSLLL 120

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           D+GFK+Q+ CFFHPLSNDMSISLN  DLDKFLKSIGR+P+YVDLE NP VGKDQPPDLAA
Sbjct: 121 DQGFKSQKHCFFHPLSNDMSISLNACDLDKFLKSIGRNPSYVDLETNPTVGKDQPPDLAA 180

Query: 181 FVPSGSTVLPDLPDPASAVQ-SAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVN 239
            VPSGS VLPD P   S+ Q     +HV+ +N     + K +KP+   +N K   AK VN
Sbjct: 181 LVPSGSIVLPDQPQKQSSSQVPKDANHVSVDNGANTVSAKVVKPSSGGKNTKGTPAKNVN 240

Query: 240 PSSSFTDAEKFVEEILDRISAKLLSEVCEKIFYVDLSQL 278
            S SF DA +FVEEIL + S  LLSEV ++   +   QL
Sbjct: 241 SSGSFADAGQFVEEILQKTSQLLLSEVKDENIKLHGEQL 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492751|ref|XP_002284446.2| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Vitis vinifera] gi|302141840|emb|CBI19043.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/268 (67%), Positives = 215/268 (80%), Gaps = 1/268 (0%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M +SKDQLLARL++LQI+F++YEHPAV+TVEAQ KYVG++GGGLSKNLFLKDKKHRFYIV
Sbjct: 1   MGHSKDQLLARLQELQIDFTKYEHPAVLTVEAQEKYVGHLGGGLSKNLFLKDKKHRFYIV 60

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SAL DTKVD+KVLSQRLGLGKGGLRMAPEE + EIL+V LG VTPFALVNESAR V+L L
Sbjct: 61  SALKDTKVDLKVLSQRLGLGKGGLRMAPEEALGEILQVSLGCVTPFALVNESARHVSLFL 120

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           D+GFK ++ CFFHPLSNDMSI++   DLDKFLKSIG+DP+YVDLEANP VGKDQPPDLA 
Sbjct: 121 DQGFKTKDFCFFHPLSNDMSIAIKACDLDKFLKSIGKDPSYVDLEANPTVGKDQPPDLAG 180

Query: 181 FVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNP 240
            VPS + VL D P+  S        H + +N    A  K +KP+ +VQ VK+K   +V+ 
Sbjct: 181 LVPSDAIVLQDPPE-KSVSSGPTEKHASVDNKSSVAAAKTVKPSNNVQKVKEKPPISVHQ 239

Query: 241 SSSFTDAEKFVEEILDRISAKLLSEVCE 268
            SSFTD   FVEEILD+ SA +LSE+ E
Sbjct: 240 LSSFTDPGHFVEEILDKTSAIVLSEITE 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545452|ref|XP_002513786.1| conserved hypothetical protein [Ricinus communis] gi|223546872|gb|EEF48369.1| conserved hypothetical protein [Ricinus communis]

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 184/268 (68%), Positives = 214/268 (79%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M Y KDQLLARLK+LQI+F QYEHP V+TVE QAKYVG+ GGGLSKNLFLKDKK RFYIV
Sbjct: 1   MGYGKDQLLARLKELQIDFVQYEHPTVLTVEEQAKYVGDKGGGLSKNLFLKDKKSRFYIV 60

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SAL DTKVDMKVLSQRLGLGKGG+RMAPEE + EIL+VPLG VTPFA++NESAR V+LLL
Sbjct: 61  SALEDTKVDMKVLSQRLGLGKGGIRMAPEEALAEILQVPLGCVTPFAVMNESARHVSLLL 120

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           DKGF AQE CFFHPLSN+MSISL+  DLDKFLKSIGR+P+YVDLEANP VGKDQPPDLA 
Sbjct: 121 DKGFIAQEYCFFHPLSNNMSISLHARDLDKFLKSIGREPSYVDLEANPPVGKDQPPDLAI 180

Query: 181 FVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNP 240
           FVPS ST+L D P   + +Q    + ++A+    AA  K  K    V+NV+ +SA   + 
Sbjct: 181 FVPSDSTILSDPPQKEAPLQGHNKNPISADKKSIAAAVKTTKLPSTVKNVQGESAVPAHQ 240

Query: 241 SSSFTDAEKFVEEILDRISAKLLSEVCE 268
            S F+DA+  VEEIL++ SA LLSE+ E
Sbjct: 241 RSVFSDADLLVEEILNKTSALLLSEIKE 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524730|ref|XP_004169374.1| PREDICTED: proline--tRNA ligase-like [Cucumis sativus]

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 174/267 (65%), Positives = 218/267 (81%), Gaps = 2/267 (0%)

Query: 3   YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSA 62
           Y+++ LL+ L+DLQ++FS+YEHPAV+TVEAQAKYVGN+GGGLSKNLFLKDKK+R+YIVSA
Sbjct: 6   YTREHLLSLLQDLQVDFSRYEHPAVLTVEAQAKYVGNLGGGLSKNLFLKDKKNRYYIVSA 65

Query: 63  LADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDK 122
           LADTKVD+KVLS RLGLGKGGLRMAPEE + E LKV LG VTPFAL+N++ARDVALLLD+
Sbjct: 66  LADTKVDLKVLSVRLGLGKGGLRMAPEEALGEKLKVSLGCVTPFALINKTARDVALLLDQ 125

Query: 123 GFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFV 182
           GFK QE CFFHPLSN+ SIS+NT++LDKFL+SIGRDP+YVDLEANP+VGKDQPPDLA  V
Sbjct: 126 GFKGQEFCFFHPLSNETSISINTSNLDKFLQSIGRDPSYVDLEANPSVGKDQPPDLAGLV 185

Query: 183 PSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSS 242
           PS S+++PD P+  S+   +  +H   +   KA     +KP+  V+  KDK    V P  
Sbjct: 186 PSVSSLVPDTPEKVSSRPDSNENHGVTDKKSKAVAANTVKPSTTVKVGKDKPTPKVQP-- 243

Query: 243 SFTDAEKFVEEILDRISAKLLSEVCEK 269
           ++ + EKFVEEILD+ SA +LS++ E+
Sbjct: 244 TYANVEKFVEEILDKTSAIVLSQLTEE 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552652|ref|XP_003544677.1| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Glycine max]

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 177/268 (66%), Positives = 211/268 (78%), Gaps = 1/268 (0%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M +SK+QLLARLK+L I FSQYEHPA++TVE   KYVG++GGG+SKNLFLKDKK RFY+V
Sbjct: 1   MGFSKEQLLARLKELLINFSQYEHPAILTVEEGEKYVGHLGGGVSKNLFLKDKKQRFYLV 60

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SAL DTKVD+KVLSQRLGLGKGGLRM P E + EIL+V LG VTPFA+VNESARDV+LLL
Sbjct: 61  SALKDTKVDIKVLSQRLGLGKGGLRMVPSEALGEILQVSLGCVTPFAVVNESARDVSLLL 120

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           D+GFK QE CFFHPLSNDM+IS+N+NDLDKFLKSIGRDP+YVD EANP VGKDQPPDLAA
Sbjct: 121 DQGFKTQEFCFFHPLSNDMTISINSNDLDKFLKSIGRDPSYVDFEANPPVGKDQPPDLAA 180

Query: 181 FVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNP 240
            VPSG+  LPD P+   + Q   G+HV+  +  K  + K +K     +N K+K+    + 
Sbjct: 181 LVPSGTINLPDQPEKQPSSQPTEGNHVSV-DEPKIISAKVVKSCVSGKNTKEKAVNKAHS 239

Query: 241 SSSFTDAEKFVEEILDRISAKLLSEVCE 268
           S +F D E FVEEIL + S  LLSE+ E
Sbjct: 240 SGNFADVELFVEEILHKTSRLLLSEIKE 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449737|ref|XP_004142621.1| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Cucumis sativus]

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 174/267 (65%), Positives = 218/267 (81%), Gaps = 2/267 (0%)

Query: 3   YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSA 62
           Y+++ LL+ L+DLQ++FS+YEHPAV+TVEAQAKYVGN+GGGLSKNLFLKDKK+R+YIVSA
Sbjct: 6   YTREHLLSLLQDLQVDFSRYEHPAVLTVEAQAKYVGNLGGGLSKNLFLKDKKNRYYIVSA 65

Query: 63  LADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDK 122
           LADTKVD+KVLS RLGLGKGGLRMAPEE + E LKV LG VTPFAL+N++ARDVALLLD+
Sbjct: 66  LADTKVDLKVLSVRLGLGKGGLRMAPEEALGEKLKVSLGCVTPFALINKTARDVALLLDQ 125

Query: 123 GFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFV 182
           GFK QE CFFHPLSN+ SIS+NT++LDKFL+SIGRDP+YVDLEANP+VGKDQPPDLA  V
Sbjct: 126 GFKGQEFCFFHPLSNETSISINTSNLDKFLQSIGRDPSYVDLEANPSVGKDQPPDLAGLV 185

Query: 183 PSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSS 242
           PS S+++PD P+  S+   +  +H   +   KA     +KP+  V+  KDK    V P  
Sbjct: 186 PSVSSLVPDTPEKVSSHPDSNENHGVTDKKSKAVAANTVKPSTTVKVGKDKPTPKVQP-- 243

Query: 243 SFTDAEKFVEEILDRISAKLLSEVCEK 269
           ++ + EKFVEEILD+ SA +LS++ E+
Sbjct: 244 TYANVEKFVEEILDKTSAIVLSQLTEE 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075807|gb|ACJ86263.1| unknown [Medicago truncatula]

 Score =  349 bits (896), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 187/283 (66%), Positives = 216/283 (76%), Gaps = 7/283 (2%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M  SK+QLL +L++LQIEFS+YEHP V+TVEAQAKYVG+  GGLSKNLFLKDKK+RFYIV
Sbjct: 1   MGLSKEQLLHQLQELQIEFSKYEHPVVLTVEAQAKYVGS--GGLSKNLFLKDKKNRFYIV 58

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SALA+TKVD+KVLSQRLGLGKGGLRMAPEE + E+L+VPLG VTPFA+VNESARDV+LLL
Sbjct: 59  SALAETKVDLKVLSQRLGLGKGGLRMAPEEALGELLQVPLGCVTPFAVVNESARDVSLLL 118

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           D+GFK QE CFFHPLSNDMSISLN   LDKFLKSIGRDP+YVDLEANPAVGKDQPPDLAA
Sbjct: 119 DQGFKTQEHCFFHPLSNDMSISLNVRGLDKFLKSIGRDPSYVDLEANPAVGKDQPPDLAA 178

Query: 181 FVPSGSTVLPDLPDPASAVQSAGGSH-----VNANNNCKAATEKAIKPAKDVQNVKDKSA 235
            VPS S +LPD P   S+ +     +     V+ +   K    K +KP+    N K    
Sbjct: 179 LVPSSSIILPDQPGKQSSTEVPKNENLVSVAVSVDTKTKTVPAKVVKPSVAGNNSKGTPE 238

Query: 236 KAVNPSSSFTDAEKFVEEILDRISAKLLSEVCEKIFYVDLSQL 278
           K V PS SF DA K VEEIL + S  LLSE+ E+   +   QL
Sbjct: 239 KTVQPSGSFADAGKLVEEILHKTSKILLSEINEETIKMHGEQL 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783581|emb|CAN68007.1| hypothetical protein VITISV_014949 [Vitis vinifera]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 172/256 (67%), Positives = 204/256 (79%), Gaps = 1/256 (0%)

Query: 13  KDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKV 72
           ++LQI+F++YEHPAV+TVEAQ KYVG++GGGLSKNLFLKDKKHRFYIVSAL DTKVD+KV
Sbjct: 258 QELQIDFTKYEHPAVLTVEAQEKYVGHLGGGLSKNLFLKDKKHRFYIVSALKDTKVDLKV 317

Query: 73  LSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFF 132
           LSQRLGLGKGGLRMAPEE + EIL+V LG VTPFALVNESAR V+L LD+GFK ++ CFF
Sbjct: 318 LSQRLGLGKGGLRMAPEEALGEILQVSLGCVTPFALVNESARHVSLFLDQGFKXKDFCFF 377

Query: 133 HPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDL 192
           HPLSNDMSI++   DLDKFLKSIG+DP+YVDLEANP VGKDQPPDLA  VPS + VL D 
Sbjct: 378 HPLSNDMSIAIKACDLDKFLKSIGKDPSYVDLEANPTVGKDQPPDLAGLVPSDAIVLQDP 437

Query: 193 PDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVE 252
           P+  S        H + +N    A  K +KP+ +VQ VK+K   +V+  SSFTD   FVE
Sbjct: 438 PE-KSVSSGPTEKHASVDNKSSVAAAKTVKPSNNVQKVKEKPXISVHQLSSFTDPGHFVE 496

Query: 253 EILDRISAKLLSEVCE 268
           EILD+ SA +LSE+ E
Sbjct: 497 EILDKTSAIVLSEITE 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461571|ref|XP_003601067.1| hypothetical protein MTR_3g072620 [Medicago truncatula] gi|355490115|gb|AES71318.1| hypothetical protein MTR_3g072620 [Medicago truncatula]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/283 (66%), Positives = 216/283 (76%), Gaps = 7/283 (2%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M  SK+QLL +L++LQIEFS+YEHP V+TVEAQAKYVG+  GGLSKNLFLKDKK+RFYIV
Sbjct: 50  MGLSKEQLLHQLQELQIEFSKYEHPVVLTVEAQAKYVGS--GGLSKNLFLKDKKNRFYIV 107

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SALA+TKVD+KVLSQRLGLGKGGLRMAPEE + E+L+VPLG VTPFA+VNESARDV+LLL
Sbjct: 108 SALAETKVDLKVLSQRLGLGKGGLRMAPEEALGELLQVPLGCVTPFAVVNESARDVSLLL 167

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           D+GFK QE CFFHPLSNDMSISLN   LDKFLKSIGRDP+YVDLEANPAVGKDQPPDLAA
Sbjct: 168 DQGFKTQEHCFFHPLSNDMSISLNVRGLDKFLKSIGRDPSYVDLEANPAVGKDQPPDLAA 227

Query: 181 FVPSGSTVLPDLPDPASAVQSAGGSH-----VNANNNCKAATEKAIKPAKDVQNVKDKSA 235
            VPS S +LPD P   S+ +     +     V+ +   K    K +KP+    N K    
Sbjct: 228 LVPSSSIILPDQPGKQSSTEVPKNENLVSVAVSVDTKTKTVPAKVVKPSVAGNNSKGTPE 287

Query: 236 KAVNPSSSFTDAEKFVEEILDRISAKLLSEVCEKIFYVDLSQL 278
           K V PS SF DA K VEEIL + S  LLSE+ E+   +   QL
Sbjct: 288 KTVQPSGSFADAGKLVEEILHKTSKILLSEINEETIKMHGEQL 330

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2826697	308	AT1G44835 "AT1G44835" [Arabido	0.826	0.850	0.641	9.1e-84
UNIPROTKB|F1NDD4	189	LOC421212 "Uncharacterized pro	0.504	0.846	0.445	7.9e-30
UNIPROTKB|F1SQK5	171	LOC100514282 "Uncharacterized	0.492	0.912	0.393	1.8e-25
UNIPROTKB|A1A4Q2	171	PRORSD1 "Prolyl-tRNA synthetas	0.492	0.912	0.393	2.2e-25
UNIPROTKB|E2R3A2	172	E2R3A2 "Uncharacterized protei	0.492	0.906	0.387	9.7e-25
UNIPROTKB|F6Y5M8	171	LOC100856725 "Uncharacterized	0.492	0.912	0.387	9.7e-25
UNIPROTKB|A6NEY8	169	PRORSD1P "Putative prolyl-tRNA	0.485	0.911	0.392	1.2e-24
RGD|1308179	169	Prorsd1 "prolyl-tRNA synthetas	0.485	0.911	0.398	1.6e-24
MGI|MGI:1915189	169	Prorsd1 "prolyl-tRNA synthetas	0.498	0.934	0.376	3.3e-24
ZFIN|ZDB-GENE-040426-1402	184	zgc:64201 "zgc:64201" [Danio r	0.473	0.815	0.373	4.4e-20

TAIR|locus:2826697 AT1G44835 "AT1G44835" [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
 Identities = 172/268 (64%), Positives = 210/268 (78%)

Query:     1 MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
             M ++KDQLL RL++L+I++S+YEHP V+TVE QAKYV +  G LSKNLFLKDKKHR+YIV
Sbjct:     1 MGFTKDQLLDRLQELEIDYSKYEHPPVLTVEEQAKYVSSSKGALSKNLFLKDKKHRYYIV 60

Query:    61 SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
             SA+ DTKVDMKVLSQRLGLGKGG+RMAPEE + E+L+V LG VTPFA+VNESARDV+LLL
Sbjct:    61 SAMVDTKVDMKVLSQRLGLGKGGIRMAPEEALGELLQVSLGCVTPFAVVNESARDVSLLL 120

Query:   121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
             D+ FK Q RC FHPLSND+S+SLNT  LDKFLKSIGRDP YVDLEANP VGKDQ PDLA 
Sbjct:   121 DQKFKNQTRCIFHPLSNDVSVSLNTLGLDKFLKSIGRDPVYVDLEANPVVGKDQAPDLAV 180

Query:   181 FVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNP 240
              VPS S ++P++P+  S+ Q      V+A      A+ K  KPA  V++V + SA    P
Sbjct:   181 CVPSNSVIVPEIPNQTSSTQIPLPKSVSAEVK-PVASAKTSKPACKVKSVAENSA----P 235

Query:   241 SSSFTDAEKFVEEILDRISAKLLSEVCE 268
             S+ + + EKFV+EILD+ SA LLSEV +
Sbjct:   236 SA-YKNPEKFVQEILDKTSALLLSEVAK 262

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|F1NDD4 LOC421212 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 73/164 (44%), Positives = 102/164 (62%)

Query:     5 KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSAL 63
             ++ L  RL+DL I  +  EHP V TVE    +V ++ GG SKNLFLKDKK + F++V+ L
Sbjct:    23 REALEQRLRDLGIAATTTEHPEVFTVEEMMAHVQHLKGGHSKNLFLKDKKRKEFWLVTVL 82

Query:    64 ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
              D +VD+  L+++LG+G G LR A E  MLE L+V  G  TP AL  +   DV L+LD G
Sbjct:    83 HDRQVDLNHLAKKLGVGSGNLRFADENAMLEKLQVGQGCATPLALFCDHG-DVRLVLDAG 141

Query:   124 FK--AQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
             F     E+ +FHP++N  ++ L+  D  KF+KS G DP  V  +
Sbjct:   142 FLEGGHEKVYFHPMTNGATMGLSPEDFLKFVKSTGHDPIVVHFD 185

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|F1SQK5 LOC100514282 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 63/160 (39%), Positives = 94/160 (58%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct:    13 RLSALAIRTEIVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNDLAKQLGVGSGNLRFADETAMLEKLKVVQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
             E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ + N
Sbjct:   132 EKVYFHPMTNTATMGLSPEDFLTFVKNTGHDPIILNFDKN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|A1A4Q2 PRORSD1 "Prolyl-tRNA synthetase associated domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 63/160 (39%), Positives = 94/160 (58%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct:    13 RLAALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNDLAKQLGVGSGNLRFADEAAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
             E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ + N
Sbjct:   132 EKVYFHPMTNAATMGLSPEDFLTFVKNTGHDPIILNFDKN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|E2R3A2 E2R3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 62/160 (38%), Positives = 92/160 (57%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct:    13 RLGALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L+++LG+G G LR A E  ML+ LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNDLAKQLGVGSGNLRFADETAMLDKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
             E+ +FHP++N  ++ L+  D   F+K  G DP  +  + N
Sbjct:   132 EKVYFHPMTNSATMGLSPEDFLTFVKKTGHDPIILRFDEN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|F6Y5M8 LOC100856725 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 62/160 (38%), Positives = 92/160 (57%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct:    13 RLGALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L+++LG+G G LR A E  ML+ LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNDLAKQLGVGSGNLRFADETAMLDKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
             E+ +FHP++N  ++ L+  D   F+K  G DP  +  + N
Sbjct:   132 EKVYFHPMTNSATMGLSPEDFLTFVKKTGHDPIILRFDEN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|A6NEY8 PRORSD1P "Putative prolyl-tRNA synthetase associated domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 62/158 (39%), Positives = 92/158 (58%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct:    13 RLGALAIHTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNELAKQLGVGSGNLRFADETAMLEKLKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
             E+ +FHP++N  ++ L+  D   F+K  G DP  ++ +
Sbjct:   132 EKVYFHPMTNAATMGLSPEDFLTFVKMTGHDPIILNFD 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

RGD|1308179 Prorsd1 "prolyl-tRNA synthetase associated domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 63/158 (39%), Positives = 91/158 (57%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFY-IVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + Y +V+ L D +++
Sbjct:    13 RLGALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKSYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L ++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNHLGKQLGVGSGNLRFADETAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
             E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ +
Sbjct:   132 EKVYFHPMTNAATMGLSPEDFLVFVKATGHDPIILNFD 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

MGI|MGI:1915189 Prorsd1 "prolyl-tRNA synthetase domain containing 1" [Mus musculus (taxid:10090)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 61/162 (37%), Positives = 94/162 (58%)

Query:     7 QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALAD 65
             +L  RL  L I     EHP V T+E    ++ ++ G  SKNLFLKDKK + +++V+ L D
Sbjct:     9 ELEQRLGALAIRTEVVEHPEVFTIEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHD 68

Query:    66 TKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK 125
              ++++  L ++LG+G G LR A E  MLE LKV  G  TP +L  +   DV  +LD  F 
Sbjct:    69 RQINLNDLGKQLGVGSGNLRFADETAMLEKLKVGQGCATPLSLFCDDG-DVKFVLDSAFL 127

Query:   126 --AQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
                 E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ +
Sbjct:   128 EGGHEKVYFHPMTNAATMGLSPEDFLIFVKATGHDPIILNFD 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-1402 zgc:64201 "zgc:64201" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 59/158 (37%), Positives = 86/158 (54%)

Query:    12 LKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMK 71
             LK L IE +  EHP V TVE    +V ++ G ++KNLFLKDKK R ++V    D  + + 
Sbjct:    31 LKRLNIETTCIEHPEVFTVEEMMPHVSHLSGVVTKNLFLKDKKRRVFLVCVRHDRPLALG 90

Query:    72 VLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDK----GFKAQ 127
              LS+RLG     LR+A E  +LE L+V  G VTP AL  ++ R V  +LD+    G    
Sbjct:    91 ELSRRLGAPN--LRLAEERLLLEKLRVRQGCVTPLALFLDTERSVTAVLDRELTHGGHTH 148

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
               C  HP++N  ++ +   DL +FL+     P  +  +
Sbjct:   149 IHC--HPMTNSATMGITPADLLRFLEETQHTPVILSFD 184

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
cd04335	156	cd04335, PrdX_deacylase, This CD includes bacteria	1e-69
COG3760	164	COG3760, COG3760, Uncharacterized conserved protei	4e-40
pfam04073	122	pfam04073, YbaK, YbaK / prolyl-tRNA synthetases as	9e-31
cd04332	136	cd04332, YbaK_like, YbaK-like	3e-26
COG2606	155	COG2606, EbsC, Uncharacterized conserved protein [	9e-07
cd04336	153	cd04336, YeaK, YeaK is an uncharacterized Echerich	2e-04

>gnl|CDD|239827 cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences

 Score =  213 bits (544), Expect = 1e-69
 Identities = 76/158 (48%), Positives = 103/158 (65%), Gaps = 2/158 (1%)

Query: 5   KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALA 64
           +D+LLA L +L I +   EHP V TVE   + +G + G  +KNLFLKDKK R Y+V+AL 
Sbjct: 1   EDELLALLDELGIAYETVEHPPVFTVEEADEVLGELPGAHTKNLFLKDKKGRLYLVTALH 60

Query: 65  DTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF 124
           D KVD+K LS++LG     L  A EE + E L V  GSVTPFAL+N+   DV ++LDK  
Sbjct: 61  DKKVDLKALSKQLGAS--RLSFASEERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDL 118

Query: 125 KAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162
             +ER  FHPL+N  ++ ++T DL KFL++ G +P  V
Sbjct: 119 LEEERVGFHPLTNTATVGISTEDLLKFLEATGHEPTVV 156

The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins. Length = 156

>gnl|CDD|226283 COG3760, COG3760, Uncharacterized conserved protein [Function unknown]

 Score =  137 bits (348), Expect = 4e-40
 Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 2/160 (1%)

Query: 7   QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADT 66
           +L A L +L I+ +  EHP V TVE        I GG +KNLFLKDKK +F++V+   D 
Sbjct: 7   ELFALLDELGIDHTTVEHPPVFTVEESQALRDEIPGGHTKNLFLKDKKDQFFLVTVDEDA 66

Query: 67  KVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA 126
            VD+K + + +G  +  L     E ++E L V  GSVT F L+N++   V ++LD+    
Sbjct: 67  VVDLKSIHETIGAAR--LSFGSPERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMD 124

Query: 127 QERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA 166
            +   FHPLSN  + S+ + DL +FL++ G +P  +D+ A
Sbjct: 125 DDLINFHPLSNTATTSIASADLIRFLEATGHEPRILDVSA 164

Length = 164

>gnl|CDD|217873 pfam04073, YbaK, YbaK / prolyl-tRNA synthetases associated domain

 Score =  111 bits (281), Expect = 9e-31
 Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 6/128 (4%)

Query: 24  HPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG 83
           HP V TVE  A+ +G   G ++K L LKDKK R+ +V    D ++D+K L++ LG  +  
Sbjct: 1   HPPVRTVEEAAEALGVPPGRIAKTLVLKDKKGRYVLVVLPGDRELDLKKLAKALGAKR-- 58

Query: 84  LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISL 143
           LR+A EE + E+  V  G+V+PF L    A  V +L+D+              N  ++ L
Sbjct: 59  LRLASEEELAELTGVEPGAVSPFGL----ANGVPVLIDESLLDYPDVVVGAGENGATLEL 114

Query: 144 NTNDLDKF 151
           +  DL K 
Sbjct: 115 SNADLRKL 122

This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligo-nucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA. Length = 122

>gnl|CDD|239824 cd04332, YbaK_like, YbaK-like

 Score =  100 bits (252), Expect = 3e-26
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 18  EFSQYEH-PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQR 76
           E+ +YEH P   T+E  A+ +G   G ++K L LKD K    +V    D ++D+K L++ 
Sbjct: 1   EYLEYEHTPGAKTIEEAAEALGVPPGQIAKTLVLKDDKGGLVLVVVPGDHELDLKKLAKA 60

Query: 77  LGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLS 136
           LG  K  LR+A EE + E+     G V PF L     + V +++D+     E  +     
Sbjct: 61  LGAKK--LRLASEEELEELTGCEPGGVGPFGL----KKGVPVVVDESLLELEDVYVGAGE 114

Query: 137 NDMSISLNTNDLDKFLK 153
               + L+  DL + L 
Sbjct: 115 RGADLHLSPADLLRLLG 131

The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX). Length = 136

>gnl|CDD|225326 COG2606, EbsC, Uncharacterized conserved protein [Function unknown]

 Score = 47.6 bits (114), Expect = 9e-07
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 9/147 (6%)

Query: 10  ARLKDLQIEFSQYE---HPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADT 66
             L   +I F  +     P+ +T    A+ +G     ++K L L   K    +     D 
Sbjct: 6   RLLDKAKIAFEVHVYELDPSALTGAEAAEALGVDPAQVAKTLVLAVDKGGPALAVVPGDQ 65

Query: 67  KVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA 126
           ++D+K L++ LG  K    MA  E +  +    +G V+PF       + +   +D+    
Sbjct: 66  RLDLKKLAKALGAKK--AEMADPEEVQRLTGYVVGGVSPFGQ----KKRLPTYIDESALR 119

Query: 127 QERCFFHPLSNDMSISLNTNDLDKFLK 153
            +  +       + + L   DL + L 
Sbjct: 120 FDTIYVSAGKRGLLVELAPQDLAELLG 146

Length = 155

>gnl|CDD|239828 cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 9/145 (6%)

Query: 6   DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKK--HRFYIVSAL 63
           ++L   L      F   +HP   T E  A   G   G  +K L  K K    RF +    
Sbjct: 2   ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALLCKVKDGSRRFVLAVLP 61

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
           AD K+D+K ++  +G  K    +A  E   E+    +G+V PF+   +    + L+ D  
Sbjct: 62  ADKKLDLKAVAAAVGGKK--ADLASPEEAEELTGCVIGAVPPFSFDPK----LKLIADPS 115

Query: 124 FKAQ-ERCFFHPLSNDMSISLNTND 147
              + +   F+    D S+ L+T D
Sbjct: 116 LLDRGDEIAFNAGRLDASVVLDTAD 140

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans. Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
cd04335	156	PrdX_deacylase This CD includes bacterial (Agrobac	100.0
COG3760	164	Uncharacterized conserved protein [Function unknow	100.0
PRK10670	159	hypothetical protein; Provisional	99.97
cd04336	153	YeaK YeaK is an uncharacterized Echerichia coli pr	99.97
TIGR00011	152	YbaK_EbsC ybaK/ebsC protein. This model represents	99.97
cd00002	152	YbaK_deacylase This CD includes cysteinyl-tRNA(Pro	99.96
cd04333	148	ProX_deacylase This CD, composed mainly of bacteri	99.95
PF04073	123	tRNA_edit: Aminoacyl-tRNA editing domain; InterPro	99.95
COG2606	155	EbsC Uncharacterized conserved protein [Function u	99.93
cd04332	136	YbaK_like YbaK-like. The YbaK family of deacylase	99.92
cd04939	139	PA2301 PA2301 is an uncharacterized Pseudomonas ae	99.91
cd04334	160	ProRS-INS INS is an amino acid-editing domain inse	99.88
PRK09194	565	prolyl-tRNA synthetase; Provisional	99.67
TIGR00409	568	proS_fam_II prolyl-tRNA synthetase, family II. Pro	99.24

>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences

Probab=100.00  E-value=2.3e-33  Score=242.61  Aligned_cols=155  Identities=49%  Similarity=0.778  Sum_probs=148.2

Q ss_pred             HHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCccc
Q 021074            6 DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLR   85 (317)
Q Consensus         6 e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~Lr   85 (317)
                      ++++++|+++||+|+.++||++.|++++++++++++++++|||+|++++++++++++|||+++|++++++.+|.+  +++
T Consensus         2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~~~~~~~~Ktlv~~~~~~~~vlv~~~gd~~vn~~kl~~~lg~~--~l~   79 (156)
T cd04335           2 DELLALLDELGIAYETVEHPPVFTVEEADEVLGELPGAHTKNLFLKDKKGRLYLVTALHDKKVDLKALSKQLGAS--RLS   79 (156)
T ss_pred             hHHHHHHHHCCCceEEEecCCcCCHHHHHHhhccCCCceEEEEEEEcCCCCEEEEEEcCCcccCHHHHHHHhCCC--Ccc
Confidence            679999999999999999999999999999999999999999999987668999999999999999999999986  799


Q ss_pred             cCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCEEE
Q 021074           86 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV  162 (317)
Q Consensus        86 ~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~~V  162 (317)
                      ||++|++.+++|+.+|+|||||+.++..+++++|+|+++...+.+|+|+|+++.++.|+++||.+++.++|+.+.+|
T Consensus        80 ~a~~ee~~~~~g~~~G~v~P~gl~~~~~~~v~i~iD~~l~~~~~v~~~~G~~~~~~~i~~~dl~~~~~~~~~~~~~~  156 (156)
T cd04335          80 FASEERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDLLEEERVGFHPLTNTATVGISTEDLLKFLEATGHEPTVV  156 (156)
T ss_pred             cCCHHHHHHHHCCCCceeCcceeccCCCCceEEEEChHHhcCCeEEEeCCCCceEEEEcHHHHHHHHHHcCCCceEC
Confidence            99999999999999999999999876667899999999999999999999999999999999999999999998874

The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.

>COG3760 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=9.9e-34  Score=243.98  Aligned_cols=164  Identities=38%  Similarity=0.634  Sum_probs=160.7

Q ss_pred             CCCcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCC
Q 021074            1 MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLG   80 (317)
Q Consensus         1 M~~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~k   80 (317)
                      |.++.+++.++|+++||++..++||++.|++|.....+..+++.+||||++|+|++|||+.+.++..+|++.+.+.+|.+
T Consensus         1 ~~kt~~el~~lL~eLgI~~~tveHppv~tveEs~~~~~eipgghtKnLfLkdkK~q~~lv~~~e~~~vDLk~ih~~IG~~   80 (164)
T COG3760           1 MMKTEAELFALLDELGIDHTTVEHPPVFTVEESQALRDEIPGGHTKNLFLKDKKDQFFLVTVDEDAVVDLKSIHETIGAA   80 (164)
T ss_pred             CCCCHHHHHHHHHHhCCCcccccCCCceehHHHHHHHhhcCCCccceeEeecCCCCEEEEEecccceecHHHHHHHhcee
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCE
Q 021074           81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA  160 (317)
Q Consensus        81 r~~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~  160 (317)
                        +++|+++|.+++++|+.||+|++||+.||.+++|.+|+|+.++..+.|.|||.+|+.|..|+.+||.+||+++||+|.
T Consensus        81 --RlsFg~~E~l~E~LGv~pG~VT~Fglindt~~rv~ivlD~~l~~~~~infHPl~N~aTt~ia~~dl~~fL~atGhep~  158 (164)
T COG3760          81 --RLSFGSPERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMDDDLINFHPLSNTATTSIASADLIRFLEATGHEPR  158 (164)
T ss_pred             --eeecCCHHHHHHHhCCCcCceeEeeeecCccceEEEEEhHhhhhccccccccCCCccceeehHHHHHHHHHHcCCCce
Confidence              899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccC
Q 021074          161 YVDLEA  166 (317)
Q Consensus       161 ~VD~sa  166 (317)
                      ++|+++
T Consensus       159 il~~~~  164 (164)
T COG3760         159 ILDVSA  164 (164)
T ss_pred             eeeccC
Confidence            999875

>PRK10670 hypothetical protein; Provisional

Probab=99.97  E-value=1e-29  Score=222.50  Aligned_cols=149  Identities=17%  Similarity=0.270  Sum_probs=137.3

Q ss_pred             HHHHHHHhCCCCeEE--EEcCCCC--CHHHHHHHhCCCCCceeeEEEEEecCC--cEEEEEEecCCCCcHHHHHHHhCCC
Q 021074            7 QLLARLKDLQIEFSQ--YEHPAVM--TVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLG   80 (317)
Q Consensus         7 ~V~~~L~klgI~ye~--veHp~~~--TieeaAk~lg~~~~qivKtLvLkdkkg--~~vLVVl~gD~kVDlkKLak~LG~k   80 (317)
                      .+.++|++.+|+|+.  ++|++..  +.+++|+++|+++++++|||+++++++  +++++++|||+++|++|+++.+|.+
T Consensus         3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~i~Ktlv~~~~~~~~~~vl~v~~gd~~ld~~kl~~~lg~~   82 (159)
T PRK10670          3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGLNADQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAK   82 (159)
T ss_pred             HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCCCHHHeEEEEEEEecCCCceEEEEEEECCceeCHHHHHHHhCCC
Confidence            589999999999998  7798765  449999999999999999999987542  4999999999999999999999986


Q ss_pred             CCccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCE
Q 021074           81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA  160 (317)
Q Consensus        81 r~~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~  160 (317)
                        +++||++|++.+++||.+|+|||||+.+    ++++|+|+++.+++.+|+++|.++.++.|+++||.++++     ..
T Consensus        83 --~~~~a~~eev~~~tG~~~G~v~P~Gl~~----~v~v~vD~~l~~~~~i~~~aG~~~~~~~i~~~dl~~l~~-----~~  151 (159)
T PRK10670         83 --KVEMADPMVAQRSTGYLVGGISPLGQKK----RLPTVIDAPAQEFATIYVSGGKRGLDIELAAGDLAKLLD-----AK  151 (159)
T ss_pred             --CcccCCHHHHHHhhCCccceECccCCCC----CCeEEEehHHhcCCEEEEcCCCCCcEEEECHHHHHHHhC-----CE
Confidence              7999999999999999999999999974    799999999999999999999999999999999999986     57


Q ss_pred             EEEccC
Q 021074          161 YVDLEA  166 (317)
Q Consensus       161 ~VD~sa  166 (317)
                      |+||+.
T Consensus       152 ~~di~~  157 (159)
T PRK10670        152 FADIAR  157 (159)
T ss_pred             EEEEEe
Confidence            999874

>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function

Probab=99.97  E-value=1.7e-29  Score=216.96  Aligned_cols=149  Identities=26%  Similarity=0.337  Sum_probs=139.5

Q ss_pred             HHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCC--cEEEEEEecCCCCcHHHHHHHhCCCCCc
Q 021074            6 DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLGKGG   83 (317)
Q Consensus         6 e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg--~~vLVVl~gD~kVDlkKLak~LG~kr~~   83 (317)
                      ++++++|+++||+|+.++||+..|++++++.+|+++++++|+++|+++++  +++++++|+|+++|++++++.+|.+  +
T Consensus         2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll~~~~~~~~~~vlvv~~~~~~v~~~kl~~~~g~~--~   79 (153)
T cd04336           2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALLCKVKDGSRRFVLAVLPADKKLDLKAVAAAVGGK--K   79 (153)
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCCHHHHHHHhCCCcccceEEEEEEecCCCceEEEEEEeCccccCHHHHHHHhCCC--c
Confidence            57999999999999999999999999999999999999999999999765  7999999999999999999999975  6


Q ss_pred             cccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEeccccc-CCeEEeecCCCcceEEecHHHHHHHHHhcCCCCEEE
Q 021074           84 LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA-QERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV  162 (317)
Q Consensus        84 Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~-~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~~V  162 (317)
                      ++||+++++.+++|+.+|+++|||+.+    ++++|+|.++.. .+.||+|+|+++.++.|+++||.+++.     +.++
T Consensus        80 l~~a~~~~l~~~~g~~~G~v~P~gl~~----~v~~~iD~~l~~~~~~v~~~~G~~~~~l~i~~~dl~~~~~-----~~~~  150 (153)
T cd04336          80 ADLASPEEAEELTGCVIGAVPPFSFDP----KLKLIADPSLLDRGDEIAFNAGRLDASVVLDTADYLRIAR-----PLVL  150 (153)
T ss_pred             cccCCHHHHHHHhCCccccCCCCCCCC----CceEEEChHHhccCCEEEEcCCCCCcEEEECHHHHHHHhC-----CEEe
Confidence            999999999999999999999999973    799999999999 889999999999999999999999987     4466


Q ss_pred             Ecc
Q 021074          163 DLE  165 (317)
Q Consensus       163 D~s  165 (317)
                      +|+
T Consensus       151 ~~~  153 (153)
T cd04336         151 QFT  153 (153)
T ss_pred             ccC
Confidence            654

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.

>TIGR00011 YbaK_EbsC ybaK/ebsC protein

Probab=99.97  E-value=1.9e-29  Score=217.24  Aligned_cols=148  Identities=19%  Similarity=0.246  Sum_probs=138.1

Q ss_pred             HHHHHHHhCCCCeEEEEcCCC---CCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCc
Q 021074            7 QLLARLKDLQIEFSQYEHPAV---MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG   83 (317)
Q Consensus         7 ~V~~~L~klgI~ye~veHp~~---~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~   83 (317)
                      .+.++|++++|+|++++|++.   .|++++++.+|+++++++|+++|++++++++++++|||+++|++++++++|.+  +
T Consensus         2 ~~~~~L~~~~i~~~~~~~~~~~~~~t~~e~a~~~g~~~~~~~Ktlv~~~~~~~~~lv~~~gd~~ld~~kl~~~lg~~--~   79 (152)
T TIGR00011         2 NAIRLLDKAKIEYEVHEYEVDPDHLDGESAAEKLGVDPHRVFKTLVAEGDKKGPVVAVIPGDEELDLKKLAKASGGK--K   79 (152)
T ss_pred             HHHHHHHHcCCCcEEEEecCCCCcccHHHHHHHhCCCHHHeEEEEEEEcCCCcEEEEEEECCceeCHHHHHHHhCCC--C
Confidence            578999999999999999975   58899999999999999999999997667999999999999999999999975  6


Q ss_pred             cccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCEEEE
Q 021074           84 LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVD  163 (317)
Q Consensus        84 Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~~VD  163 (317)
                      ++||+++++.+++|+.+|+|+|||+.    .++++|+|+++...+.+|+|+|+++.++.|+++||.+++.     +.++|
T Consensus        80 ~~~a~~ee~~~~~g~~~G~v~P~g~~----~~~~vivD~~l~~~~~~~~~~g~~~~~~~i~~~dl~~~~~-----~~~~~  150 (152)
T TIGR00011        80 AEMADPKDAEKVTGYIRGGISPIGQK----KKFPTYIDESAKQLETIYVSGGKRGLQIELAPDDLIRLLD-----GTFAD  150 (152)
T ss_pred             cccCCHHHHHHhcCCcccccCCCCcC----CCccEEEehHHhcCCEEEEecCCCCcEEEECHHHHHHHhC-----CEEEe
Confidence            99999999999999999999999987    3799999999999999999999999999999999999986     66777


Q ss_pred             cc
Q 021074          164 LE  165 (317)
Q Consensus       164 ~s  165 (317)
                      +|
T Consensus       151 i~  152 (152)
T TIGR00011       151 IA  152 (152)
T ss_pred             cC
Confidence            75

This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.

>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins

Probab=99.96  E-value=7.1e-28  Score=207.72  Aligned_cols=142  Identities=18%  Similarity=0.243  Sum_probs=133.3

Q ss_pred             HHHHHHHHhCCCCeEEEEcCCC---CCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCC
Q 021074            6 DQLLARLKDLQIEFSQYEHPAV---MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG   82 (317)
Q Consensus         6 e~V~~~L~klgI~ye~veHp~~---~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~   82 (317)
                      +.++++|+++||+|++++|+..   .|++|+++.+|+++++++|+++++.++++++++++|+|+++|++++++.+|.+  
T Consensus         2 ~~~~~~L~~~~i~~~~~~h~~~~~~~t~~e~~~~~~~~~~~~~K~li~~~d~~~~vlv~~~gd~~ld~~kl~~~lg~~--   79 (152)
T cd00002           2 TPAIRLLDKAKIPYELHEYEHDEDASDGLEAAEKLGLDPEQVFKTLVVEGDKKGLVVAVVPVDEELDLKKLAKALGAK--   79 (152)
T ss_pred             CHHHHHHHHcCCCeEEEeecCCCCcCCHHHHHHHhCCCHHHeEEEEEEEcCCCcEEEEEEECCceeCHHHHHHHhCCC--
Confidence            4689999999999999999743   59999999999999999999999997668999999999999999999999976  


Q ss_pred             ccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHH
Q 021074           83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK  153 (317)
Q Consensus        83 ~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~  153 (317)
                      +++||+++++.+++|+.+|+|+|||+.    .++++|+|.++...+.+++|+|+++.++.|+.+||.+++.
T Consensus        80 ~l~~a~~ee~~~~~g~~~G~v~P~~l~----~~v~~liD~~l~~~~~~~~~ag~~~~~l~i~~~~l~~~~~  146 (152)
T cd00002          80 KVEMAPPKDAERLTGYIRGGISPLGQK----KRLPTVIDESALDLDTIYVSAGKRGLQIELAPQDLAKLTG  146 (152)
T ss_pred             CcccCCHHHHHHhcCCcccccCccCcC----CCccEEEehHHhcCCEEEEeCCCCCcEEEECHHHHHHHhC
Confidence            799999999999999999999999997    3799999999999999999999999999999999999987

These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.

>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)

Probab=99.95  E-value=1.7e-27  Score=204.26  Aligned_cols=140  Identities=21%  Similarity=0.346  Sum_probs=133.5

Q ss_pred             HHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCcc
Q 021074            6 DQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL   84 (317)
Q Consensus         6 e~V~~~L~klgI~ye~veHp-~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~L   84 (317)
                      +++.++|++++|.|+.++|| +..|++|+++++|.++++++|++++++++ +++++++|+|+++|++++++.+|.   ++
T Consensus         2 ~~~~~~L~~~~i~~~~~~~~~~~~t~~e~a~~~~~~~~~~~K~l~~~~~~-~~~~v~~~~~~~ld~~kl~~~lg~---~l   77 (148)
T cd04333           2 ERVRAFLAARGLDLEVIELPESTRTAALAAEALGCEPGQIAKSLVFRVDD-EPVLVVTSGDARVDNKKFKALFGE---KL   77 (148)
T ss_pred             HHHHHHHHHCCCCCeEEECCCCcchHHHHHHHcCCChhHEEEEEEEEECC-cEEEEEEeCCcccCHHHHHHHhCC---Cc
Confidence            57999999999999999999 68999999999999999999999999965 699999999999999999999996   59


Q ss_pred             ccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHH
Q 021074           85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK  153 (317)
Q Consensus        85 r~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~  153 (317)
                      +||+++++.+++||.+|+++|||+..    ++++|+|+++...+.+++++|+++.++.|+++||.+++.
T Consensus        78 ~~a~~~~~~~~~g~~~G~v~P~gl~~----~v~v~vD~~l~~~~~i~~~~g~~~~~~~i~~~dl~~~~~  142 (148)
T cd04333          78 KMADAEEVRELTGFAIGGVCPFGHPE----PLPVYLDESLKRFDEVWAAAGTPNAAFRLTPDELERLTG  142 (148)
T ss_pred             eeCCHHHHHHHHCCCCCcCCCCCCCC----CCeEEEehhHhhCCeEEEcCCCCCcEEEECHHHHHHHhC
Confidence            99999999999999999999999973    699999999999999999999999999999999999987

While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.

>PF04073 tRNA_edit: Aminoacyl-tRNA editing domain; InterPro: IPR007214 This domain of unknown function is found in numerous prokaryote organisms

Probab=99.95  E-value=5.8e-27  Score=194.55  Aligned_cols=122  Identities=31%  Similarity=0.483  Sum_probs=113.2

Q ss_pred             cCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCccccCCHHHHHHhcCCCceec
Q 021074           24 HPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSV  103 (317)
Q Consensus        24 Hp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~Lr~AseEeL~e~lG~~pG~V  103 (317)
                      ||++.|++|+++++|+++++++||++|++++++++++++++|+++|++++++.+|.+  +++||++|++.++||+.+|+|
T Consensus         1 h~~~~t~~~~a~~~~~~~~~~~Ktlv~~~~~~~~~lv~~~~d~~ld~~kl~~~~g~~--~l~~a~~e~~~~~~g~~~G~v   78 (123)
T PF04073_consen    1 HPPTRTIEDAAKALGVPPEQIVKTLVLKDKKGRPVLVVLPGDHRLDLKKLAKALGAR--RLRLASPEELEELTGYEPGGV   78 (123)
T ss_dssp             ETTTSSHHHHHHHHTCSGGGEEEEEEEEETTTEEEEEEEETTSEB-HHHHHHHHT-S--SEEE-HHHHHHHHHSSTTTS-
T ss_pred             CcCCCcHHHHHHHcCCCHHHEEEEEEEEECCCCEEEEEECCCCEecHHHHhcccccc--chhhccHHHhhhccCCCccee
Confidence            899999999999999999999999999998788999999999999999999999975  899999999999999999999


Q ss_pred             CCCcc-cCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHH
Q 021074          104 TPFAL-VNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKF  151 (317)
Q Consensus       104 sPfGL-~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kl  151 (317)
                      +|||+ .    .++++|+|+++.+.+.+++|+|+++.++.++.+||.+|
T Consensus        79 ~P~g~~~----~~~~vvvD~~l~~~~~v~~~~g~~~~~l~~~~~dl~~l  123 (123)
T PF04073_consen   79 SPFGLPP----KGVPVVVDESLLELDNVYFGAGEPGSHLEISNEDLRKL  123 (123)
T ss_dssp             -SSGGGS----TTEEEEEEGGGGGSSEEEEECSSTTEEEEEEHHHHHHH
T ss_pred             ccccccc----CccEEEEEHHHcCCCcEEEeCCCCCeEEEEChHHhccC
Confidence            99999 6    48999999999999999999999999999999999986

The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligonucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA [].; PDB: 3MEM_A 2J3L_A 2J3M_A 1WDV_B 2Z0X_A 2Z0K_A 2CX5_C 1DBX_B 1DBU_A 1VJF_A ....

>COG2606 EbsC Uncharacterized conserved protein [Function unknown]

Probab=99.93  E-value=4.4e-25  Score=193.33  Aligned_cols=141  Identities=22%  Similarity=0.319  Sum_probs=130.4

Q ss_pred             HHHHHHhCCCCeEE--EEc-CCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCcc
Q 021074            8 LLARLKDLQIEFSQ--YEH-PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL   84 (317)
Q Consensus         8 V~~~L~klgI~ye~--veH-p~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~L   84 (317)
                      ..+.|+.++|.|+.  +++ +...|.+++|+.+|+++++++|||++++++++++++|+|+++++|+++|++.+|.+  ++
T Consensus         4 a~~~l~~~~~~~~~~~~~~~~~~~~~~~aae~~g~~~~~i~KTLvl~~~~~~~~~~V~p~~~~Ldlkkla~~~G~k--k~   81 (155)
T COG2606           4 AVRLLDKAKIAFEVHVYELDPSALTGAEAAEALGVDPAQVAKTLVLAVDKGGPALAVVPGDQRLDLKKLAKALGAK--KA   81 (155)
T ss_pred             HHHHHHHhcCCCceeEEEecCCcccHHHHHHHhCCCHHHeeEEEEEEcCCCCEEEEEEeCcCccCHHHHHHHhCCc--cc
Confidence            56788888999876  333 45677999999999999999999999998778999999999999999999999987  79


Q ss_pred             ccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHh
Q 021074           85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS  154 (317)
Q Consensus        85 r~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a  154 (317)
                      .|++++++++.|||..|+|+|||+..    .+|+|+|+++.++++||+++|.++..|.|+++||.+++.+
T Consensus        82 ~ma~~~~v~~~TGy~vGGv~P~G~~~----~~p~~iD~s~~~~~~I~~~aG~rg~~v~lap~dl~~l~~~  147 (155)
T COG2606          82 EMADPEEVQRLTGYVVGGVSPFGQKK----RLPTYIDESALRFDTIYVSAGKRGLLVELAPQDLAELLGA  147 (155)
T ss_pred             ccCCHHHHHHHhCCcccCcCCCCcCC----CCCEEEehhhhcCCeEEecCCCcCceEEECHHHHHHhhcc
Confidence            99999999999999999999999984    8999999999999999999999999999999999999873

>cd04332 YbaK_like YbaK-like

Probab=99.92  E-value=3.6e-24  Score=178.45  Aligned_cols=130  Identities=31%  Similarity=0.476  Sum_probs=122.6

Q ss_pred             CeEEEEcCCC-CCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCccccCCHHHHHHhc
Q 021074           18 EFSQYEHPAV-MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEIL   96 (317)
Q Consensus        18 ~ye~veHp~~-~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~Lr~AseEeL~e~l   96 (317)
                      +|..+.|++. .|++++++.++.++++++|+++|++++++++++++|+|+++|++++++.+|.+  +++||+++++.+++
T Consensus         1 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~K~l~l~~~~~~~v~v~~~~d~~~d~~~l~~~~g~~--~l~~a~~~~~~~~~   78 (136)
T cd04332           1 EYLEYEHTPGAKTIEEAAEALGVPPGQIAKTLVLKDDKGGLVLVVVPGDHELDLKKLAKALGAK--KLRLASEEELEELT   78 (136)
T ss_pred             CcEEEecCCCCCCHHHHHHHcCCCHHHeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHhCCC--CeeeCCHHHHHHHh
Confidence            3677888877 99999999999999999999999998767999999999999999999999986  79999999999999


Q ss_pred             CCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHH
Q 021074           97 KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK  153 (317)
Q Consensus        97 G~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~  153 (317)
                      |+.+|+|+|||+..    ++++|+|+++...+.+++|+|+++.++.|+.+||.+++.
T Consensus        79 g~~~G~v~P~~~~~----~v~~~iD~~l~~~~~~~~~~g~~~~~~~i~~~~l~~~~~  131 (136)
T cd04332          79 GCEPGGVGPFGLKK----GVPVVVDESLLELEDVYVGAGERGADLHLSPADLLRLLG  131 (136)
T ss_pred             CCCcCccCccccCC----CCcEEEehHHhhCCeEEEcCCCcCcEEEECHHHHHHHhc
Confidence            99999999999984    799999999999999999999999999999999999876

The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).

>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function

Probab=99.91  E-value=1.2e-23  Score=181.14  Aligned_cols=128  Identities=19%  Similarity=0.242  Sum_probs=114.3

Q ss_pred             EEEcCC-CCCHHHHHHHhCCCCCceeeEEEEEecC---CcEEEEEEecCCCCcHHH-HHHHhCCCCCccccCCHHHHHHh
Q 021074           21 QYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKK---HRFYIVSALADTKVDMKV-LSQRLGLGKGGLRMAPEETMLEI   95 (317)
Q Consensus        21 ~veHp~-~~TieeaAk~lg~~~~qivKtLvLkdkk---g~~vLVVl~gD~kVDlkK-Lak~LG~kr~~Lr~AseEeL~e~   95 (317)
                      .|+|.+ ..+..++|+.+|+++++++|||+++.+.   .+++++++++|+++|+++ +++.+|.+  +++|++++++.+.
T Consensus         4 ~y~~~~~~~~~~~~A~~lG~~~~~i~KTLv~~~~~~~~~~~~v~vv~gd~~ldlkk~~~~~~g~k--k~~ma~~~ev~~~   81 (139)
T cd04939           4 VFAIDPELADTAAFCARYGFGLEDSANCVVVAGKRGGEERYAACVVLATTRADVNGVVKRRLGAR--KASFAPMETAVEL   81 (139)
T ss_pred             EEecCCCcccHHHHHHHhCCCHHHeEEEEEEEeecCCCccEEEEEEECccccCHHHHHHHHhCCC--CcccCCHHHHHHh
Confidence            356653 4666778889999999999999998642   258999999999999875 77999976  7999999999999


Q ss_pred             cCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHh
Q 021074           96 LKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS  154 (317)
Q Consensus        96 lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a  154 (317)
                      |||.+|+|||||+.    +.+++|+|+++++++.||+++|.++.++.|+++||.+++.+
T Consensus        82 TGy~~GGvsP~G~~----~~~pv~iD~sl~~~~~v~~saG~~~~~~~l~p~~L~~~~~a  136 (139)
T cd04939          82 TGMEYGGITPVGLP----AGWPILVDSAVAERPAVVIGSGVRRSKLLLPGAALAELPGA  136 (139)
T ss_pred             hCCCCccCCcCCcC----CCCCEEEehHHhcCCEEEECCCCCCcEEEECHHHHHHHhCC
Confidence            99999999999998    47999999999999999999999999999999999999864

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.

>cd04334 ProRS-INS INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial

Probab=99.88  E-value=2.9e-22  Score=174.16  Aligned_cols=118  Identities=20%  Similarity=0.295  Sum_probs=111.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecC-CcEEEEEEecCCCCcHHHHHHHhCCCCCccccCCHHHHHHh
Q 021074           17 IEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKK-HRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEI   95 (317)
Q Consensus        17 I~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkk-g~~vLVVl~gD~kVDlkKLak~LG~kr~~Lr~AseEeL~e~   95 (317)
                      .+|+.++||++.|++++++.+|++.++++|+|+|++++ ++++++++|+|+++|+++|++++|.+  +++||+++++.++
T Consensus        25 ~~~~~v~hp~~~t~~~~a~~~~~~~~~~~K~l~~~~~~~~~~~l~~~~~d~~vd~~kl~~~~g~~--~l~~a~~eel~~~  102 (160)
T cd04334          25 KELEKVATPGQKTIEELAEFLGVPPSQTVKTLLVKADGEEELVAVLLRGDHELNEVKLENLLGAA--PLELASEEEIEAA  102 (160)
T ss_pred             cCCeEEcCcCCCCHHHHHHHhCcCHHHeEEEEEEEECCCCCEEEEEecCCchhCHHHHHHhcCCC--cceeCCHHHHHHh
Confidence            78999999999999999999999999999999999875 57999999999999999999999986  7999999999999


Q ss_pred             cCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceE
Q 021074           96 LKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSI  141 (317)
Q Consensus        96 lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI  141 (317)
                      +|+.+|+|+|||+.     ++++|+|+++...+.+++++|.++..+
T Consensus       103 ~g~~~G~v~P~gl~-----~v~~~iD~~l~~~~~~~~ga~~~~~~~  143 (160)
T cd04334         103 TGAPPGFIGPVGLK-----KIPIIADRSVADLKNFVCGANEDDYHY  143 (160)
T ss_pred             hCCCCCEECCcCCC-----CCeEEEehHHhcCCCEEEcCCCCCcEE
Confidence            99999999999996     599999999999999999999888755

It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-celled parasites. ProRS catalyzes the attachment of proline to tRNA(Pro); proline is first activated by ATP, and then transferred to the acceptor end of tRNA(Pro). ProRS can inadvertently process noncognate amino acids such as alanine and cysteine, and to avoid such errors, in post-transfer editing, the INS domain deacylates mischarged Ala-tRNA(Pro), thus ensuring the fidelity of translation. Misacylated Cys-tRNA(Pro) is not edited by ProRS. In addition to the INS editing domain, the prokaryote-like ProRS protein contains catalytic and anticodon-binding domains which form a dimeric interface.

>PRK09194 prolyl-tRNA synthetase; Provisional

Probab=99.67  E-value=5.2e-16  Score=159.55  Aligned_cols=114  Identities=21%  Similarity=0.293  Sum_probs=105.9

Q ss_pred             EEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCccccCCHHHHHHhcCCCc
Q 021074           21 QYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPL  100 (317)
Q Consensus        21 ~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~Lr~AseEeL~e~lG~~p  100 (317)
                      .++||+..|++++++.+|+++++++|||++++++ +++++++|+|+++|+++|++.+|..  +++||+++++.+++|+.+
T Consensus       252 ~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~-~~~lvvvp~d~~vn~~kl~~~lg~~--~l~~a~~eel~~~~g~~~  328 (565)
T PRK09194        252 KVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADG-ELVAVLVRGDHELNEVKLENLLGAA--PLELATEEEIRAALGAVP  328 (565)
T ss_pred             eecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeCC-eEEEEEeecchhhhHHHHHhhcCCc--ccccCCHHHHHHhhCCCC
Confidence            4578889999999999999999999999999864 7999999999999999999999986  799999999999999999


Q ss_pred             eecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceE
Q 021074          101 GSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSI  141 (317)
Q Consensus       101 G~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI  141 (317)
                      |+++|||+.+    ++++|+|.++...+.+++++|.++..+
T Consensus       329 G~v~P~Gl~~----~v~viiD~sl~~~~~~~~gan~~g~h~  365 (565)
T PRK09194        329 GFLGPVGLPK----DVPIIADRSVADMSNFVVGANEDDYHY  365 (565)
T ss_pred             CccCcccCCC----CceEEEeccccccccccccCCCCCcee
Confidence            9999999985    799999999999999999998887655

>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II

Probab=99.24  E-value=3.8e-11  Score=124.18  Aligned_cols=117  Identities=15%  Similarity=0.201  Sum_probs=103.9

Q ss_pred             eEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCC--cEEEEEEecCCCCcHHHHHHHhCCCCCccccCCHHHHHHhc
Q 021074           19 FSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEIL   96 (317)
Q Consensus        19 ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg--~~vLVVl~gD~kVDlkKLak~LG~kr~~Lr~AseEeL~e~l   96 (317)
                      .+.+++|.+.|+++.+.++++++.+.+|+++++..++  +++++++|||++||+.|+.+.+|... .+++|+++++...+
T Consensus       251 ~~~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~-~~~~a~~~~~~~~~  329 (568)
T TIGR00409       251 LDKVDTPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVAQ-VLELATEEEIFQKI  329 (568)
T ss_pred             ceeecCCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccCc-ccccCCHHHHHHhh
Confidence            4678899999999999999999999999999987432  59999999999999999999985321 48999999999999


Q ss_pred             CCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcce
Q 021074           97 KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMS  140 (317)
Q Consensus        97 G~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~t  140 (317)
                      |..+|+++|+|+.    ..+++++|.++.....+.+++|..+.-
T Consensus       330 g~~~g~~gpv~~~----~~~~i~~D~~~~~~~~~~~gan~~~~h  369 (568)
T TIGR00409       330 ASGPGSLGPVNIN----GGIPVLIDQTVALMSDFAAGANADDKH  369 (568)
T ss_pred             CCCCCccCccccc----cCceEEechhhhcccccccccCCCCce
Confidence            9999999999987    368999999999999999998887553

Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	317
1vjf_A	180	Crystal Structure Of A Putative Dna-Binding Protein		7e-25
1vki_A	181	Crystal Structure Of A Putative Oligo-Nucleotide Bi		1e-18

>pdb|1VJF|A Chain A, Crystal Structure Of A Putative Dna-Binding Protein (Cc_0111) From Caulobacter Crescentus Cb15 At 1.62 A Resolution Length = 180

Iteration: 1
 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
           ++  L A      ++    +HP V  VE   +      GG +KNLFLKD K + +++SAL
Sbjct: 15  TRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAXPGGHTKNLFLKDAKGQLWLISAL 74
Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            +T +D+K L   +G G+  L   P+E  LE L V  GSVT F L+N++ + V  +LDK 
Sbjct: 75  GETTIDLKKLHHVIGSGR--LSFGPQEXXLETLGVTPGSVTAFGLINDTEKRVRFVLDKA 132
Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVG 171
               +   FHPL ND + +++   L +FL ++G +P  VD  A   VG
Sbjct: 133 LADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPXIVDFAAXEVVG 180

>pdb|1VKI|A Chain A, Crystal Structure Of A Putative Oligo-Nucleotide Binding Protein (Atu3699, Agr_l_2275) From Agrobacterium Tumefaciens Str. C58 At 1.60 A Resolution Length = 181

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 7   QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADT 66
           +L   L  L I  +  +H  V TV         I GG +KNLF+KDKK ++++++   + 
Sbjct: 23  ELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENA 82
Query: 67  KVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA 126
            VD+K + + +G     +     E MLE L V  GSVT F  +N++AR V  +LD     
Sbjct: 83  VVDLKSVHKTIG-AASRVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLE 141
Query: 127 QERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP 159
            E    HPLSND + ++ + DL +FL++ G  P
Sbjct: 142 NELVNGHPLSNDQTTTIASKDLIRFLEATGHAP 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
1vjf_A	180	DNA-binding protein, putative; structural genomics	2e-48
1vki_A	181	Hypothetical protein ATU3699; structural genomics,	2e-45
3op6_A	152	Uncharacterized protein; structural genomics, join	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1 Length = 180

 Score =  159 bits (403), Expect = 2e-48
 Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 2/168 (1%)

Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
           ++  L A      ++    +HP V  VE   +    + GG +KNLFLKD K + +++SAL
Sbjct: 15  TRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISAL 74

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            +T +D+K L   +G G+  L   P+E MLE L V  GSVT F L+N++ + V  +LDK 
Sbjct: 75  GETTIDLKKLHHVIGSGR--LSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKA 132

Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVG 171
               +   FHPL ND + +++   L +FL ++G +P  VD  A   VG
Sbjct: 133 LADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFAAMEVVG 180

>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1 Length = 181

 Score =  151 bits (382), Expect = 2e-45
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 1/161 (0%)

Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
           +  +L   L  L I  +  +H  V TV         I GG +KNLF+KDKK ++++++  
Sbjct: 20  TATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVE 79

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            +  VD+K + + +G     +     E MLE L V  GSVT F  +N++AR V  +LD  
Sbjct: 80  ENAVVDLKSVHKTIGAASR-VSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSD 138

Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 164
               E    HPLSND + ++ + DL +FL++ G  P  + +
Sbjct: 139 LLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVLKV 179

>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp} Length = 152

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 8/148 (5%)

Query: 7   QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADT 66
           +L   L   +I++    H    T +  A      G  L+K + +K    R  +V   A  
Sbjct: 6   KLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMDG-RLAMVVLPASD 64

Query: 67  KVDMKVLSQRLGLGKGGLRMAPEETMLEILK-VPLGSVTPFALVNESARDVALLLDKGFK 125
            +    L + +G     L +A E           +G++ PF         + +L+     
Sbjct: 65  HITFMKLKEAIGTSD--LELATESEFEGKFAECDVGAMPPFGN----LYGLPVLVSTKLS 118

Query: 126 AQERCFFHPLSNDMSISLNTNDLDKFLK 153
           AQ+   F+  S+   + L+  D +K +K
Sbjct: 119 AQDNILFNAGSHSELMQLSFGDFEKLVK 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 42/311 (13%), Positives = 80/311 (25%), Gaps = 99/311 (31%)

Query: 40  IGGGLSKNL-FLKDKKHRFYIVSALADTKVDMKV-LSQRLGLGKGGLRMAP-----EETM 92
           +   L  N  FL                 +  ++ + QR  L       A       +  
Sbjct: 83  VEEVLRINYKFLMSPIKTEQR-----QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 93  LEILKVPLGSVTPFA--------------LVNESARDVALLLDKGFKA------------ 126
           L+ L+  L  + P                +  +      +     FK             
Sbjct: 138 LK-LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 127 ------QERCF-----FHPLSNDM-SISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQ 174
                 Q+  +     +   S+   +I L  + +   L+ + +   Y             
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY------------- 243

Query: 175 PPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNA-NNNCKA-ATEKAIKPAKDVQNVKD 232
              L         VL +       VQ+A     NA N +CK   T +  +    +     
Sbjct: 244 ENCL--------LVLLN-------VQNA--KAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 233 KSAKAVNPSSSFTDAE--KFVEEILDRISAKLLSEVCEKIFYVDLSQLVICCTHFKKSVM 290
                 + S + T  E    + + LD     L  EV         +   +         +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL------TTNPRRLS--------I 332

Query: 291 FSLPLRNYLCR 301
            +  +R+ L  
Sbjct: 333 IAESIRDGLAT 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
1vjf_A	180	DNA-binding protein, putative; structural genomics	100.0
1vki_A	181	Hypothetical protein ATU3699; structural genomics,	100.0
3op6_A	152	Uncharacterized protein; structural genomics, join	100.0
2z0x_A	158	Putative uncharacterized protein TTHA1699; protein	100.0
1wdv_A	152	Hypothetical protein APE2540; structural genomics,	99.97
1dbu_A	158	HI1434, cysteinyl-tRNA(Pro) deacylase; structural	99.97
2dxa_A	166	Protein YBAK; trans-editing domain, prolyl-tRNA sy	99.96
3mem_A	457	Putative signal transduction protein; structural g	99.89
2j3l_A	572	Prolyl-tRNA synthetase; class II aminoacyl- T synt	99.27

>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1

Probab=100.00  E-value=3.3e-36  Score=265.93  Aligned_cols=166  Identities=36%  Similarity=0.636  Sum_probs=157.7

Q ss_pred             CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCC
Q 021074            3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG   82 (317)
Q Consensus         3 ~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~   82 (317)
                      |+.++++++|+++||+|+.++||+..|++++++++|+++++++|||+|++++++||++++|+|+++|++++++.+|.+  
T Consensus        14 ~~~~~v~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~~lvvv~gd~~ld~kkl~~~lg~k--   91 (180)
T 1vjf_A           14 KTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGSG--   91 (180)
T ss_dssp             CCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEEEEEEETTSCEEEEEEETTCCCCTTTHHHHHTCS--
T ss_pred             chHHHHHHHHHHCCCCEEEEecCCCCCHHHHHHHcCCCccceeeEEEEEeCCCCEEEEEEeCCCccCHHHHHHHhCCC--
Confidence            578999999999999999999999999999999999999999999999997677999999999999999999999986  


Q ss_pred             ccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCEEE
Q 021074           83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV  162 (317)
Q Consensus        83 ~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~~V  162 (317)
                      +++||+++++.++|||.+|+|+|||+.++..+.+++|+|+++...+.|++|+|.++.+|.|+++||.+++++.+|++.||
T Consensus        92 ~l~~a~~eel~~~tG~~~G~v~P~Gl~~~~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v  171 (180)
T 1vjf_A           92 RLSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIV  171 (180)
T ss_dssp             CEEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEE
T ss_pred             CeeeCCHHHHHHHhCCCCceeCccccCCCCCCccEEEEchHHhcCCcEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEE
Confidence            79999999999999999999999999876566799999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCC
Q 021074          163 DLEANPAV  170 (317)
Q Consensus       163 D~sa~~~~  170 (317)
                      ||+++..+
T Consensus       172 ~~~~~~~~  179 (180)
T 1vjf_A          172 DFAAMEVV  179 (180)
T ss_dssp             ETTTTEEC
T ss_pred             ECcccccC
Confidence            99986543

>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1

Probab=100.00  E-value=1.2e-35  Score=262.40  Aligned_cols=163  Identities=33%  Similarity=0.526  Sum_probs=155.0

Q ss_pred             CCcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhC-CC
Q 021074            2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG-LG   80 (317)
Q Consensus         2 ~~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG-~k   80 (317)
                      .|+.++++++|+++||+|+.++||+..|++++|+++|+++++++|||++++++++||++++|||+++|++|+++.+| .+
T Consensus        18 ~~~~~~~~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~vlvvv~gd~~ld~kkl~~~lg~~k   97 (181)
T 1vki_A           18 RKTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENAVVDLKSVHKTIGAAS   97 (181)
T ss_dssp             CCCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEEEEEECTTCCEEEEEEETTCCBCTTTHHHHHTCSS
T ss_pred             chHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHcCCCccceeEEEEEEEcCCeEEEEEEeCCCccCHHHHHHHhCCCC
Confidence            46788999999999999999999999999999999999999999999999976789999999999999999999999 55


Q ss_pred             CCccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCE
Q 021074           81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA  160 (317)
Q Consensus        81 r~~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~  160 (317)
                        +++||+++++.++|||.+|+|+|||+.+|..+++++|+|+++...+.|++|+|.++.++.|+++||.+++++.||++.
T Consensus        98 --~l~~a~~eel~~~tG~~~G~v~P~Gl~~d~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~  175 (181)
T 1vki_A           98 --RVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPL  175 (181)
T ss_dssp             --SCEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCE
T ss_pred             --CeEECCHHHHHHHHCCCcceECcceeccCCCCCCEEEEchHHhcCCeEEEeCCCCCeEEEECHHHHHHHHHhcCCCeE
Confidence              799999999999999999999999997765568999999999999999999999999999999999999999999999


Q ss_pred             EEEccC
Q 021074          161 YVDLEA  166 (317)
Q Consensus       161 ~VD~sa  166 (317)
                      ||||+.
T Consensus       176 ~v~~~~  181 (181)
T 1vki_A          176 VLKVSE  181 (181)
T ss_dssp             EECCBC
T ss_pred             EEeCCC
Confidence            999963

>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}

Probab=100.00  E-value=3.1e-33  Score=239.87  Aligned_cols=145  Identities=21%  Similarity=0.332  Sum_probs=134.6

Q ss_pred             CCcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCC
Q 021074            2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGK   81 (317)
Q Consensus         2 ~~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr   81 (317)
                      ||+.++++++|+++||+|+.++||+..|++++|+++|+++++++|||+++++ +++|++++|+|+++|++|+++.+|.+ 
T Consensus         1 ~M~~~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg~~-   78 (152)
T 3op6_A            1 GMPVKKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMD-GRLAMVVLPASDHITFMKLKEAIGTS-   78 (152)
T ss_dssp             -CHHHHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSCCEEEEEEEET-TEEEEEEEETTCCCCHHHHHHHHSCS-
T ss_pred             CCcHHHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhheEEEEEEEEC-CeEEEEEECCCCeECHHHHHHHhCCC-
Confidence            6889999999999999999999999999999999999999999999999996 57999999999999999999999986 


Q ss_pred             CccccCCHHHHHHhc-CCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHH
Q 021074           82 GGLRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK  153 (317)
Q Consensus        82 ~~Lr~AseEeL~e~l-G~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~  153 (317)
                       +++||+++++.+.+ ||.+|+|+|||+.+    ++++|+|+++...+.||+|+|+++.++.|+++||.++++
T Consensus        79 -~~~~a~~e~l~~~~tG~~~G~v~P~g~~~----~~~v~~D~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~  146 (152)
T 3op6_A           79 -DLELATESEFEGKFAECDVGAMPPFGNLY----GLPVLVSTKLSAQDNILFNAGSHSELMQLSFGDFEKLVK  146 (152)
T ss_dssp             -CEEECCGGGTGGGCTTSCTTCCCSCGGGG----TCCEEEEHHHHTSSEEEEECSSSSEEEEEEHHHHHHHHC
T ss_pred             -ceeeCCHHHHHHHhcCCCcCCCCCCCCCc----CCeEEEehhhccCCeEEEeCCCCCcEEEECHHHHHHHhc
Confidence             79999999999885 99999999999985    699999999999999999999999999999999999997

>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A

Probab=100.00  E-value=6.6e-32  Score=231.87  Aligned_cols=153  Identities=18%  Similarity=0.228  Sum_probs=143.7

Q ss_pred             CCCcHHHHHHHHHhCCCCe-EEEEcCC-CCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhC
Q 021074            1 MAYSKDQLLARLKDLQIEF-SQYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG   78 (317)
Q Consensus         1 M~~s~e~V~~~L~klgI~y-e~veHp~-~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG   78 (317)
                      |.|+.++++++|+++||+| +.++||+ ..|++++|+++|+++++++|||+++++ ++++++++|+|+++|++|+++.+|
T Consensus         3 ~~m~~~~~~~~L~~~~i~~~~~~~~p~~~~t~~e~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg   81 (158)
T 2z0x_A            3 LSPSARRVQGALETRGFGHLKVVELPASTRTAKEAAQAVGAEVGQIVKSLVFVGE-KGAYLFLVSGKNRLDLGKATRLVG   81 (158)
T ss_dssp             CCHHHHHHHHHHHHTTCTTSCEEECSSCCSSHHHHHHHHTCCGGGEEEEEEEEES-SSEEEEEEETTCCBCHHHHHHHHT
T ss_pred             cchhHHHHHHHHHHcCCCCCEEEEcCCCCCCHHHHHHHcCCCHHHEEEEEEEEeC-CcEEEEEEECchhhCHHHHHHHhC
Confidence            5677899999999999999 9999995 999999999999999999999999984 679999999999999999999999


Q ss_pred             CCCCccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCC
Q 021074           79 LGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRD  158 (317)
Q Consensus        79 ~kr~~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~  158 (317)
                      .   +++||+++++.++|||.+|+|+|||+.+    ++++|+|+++...+.||+|+|.++.++.|+++||.++++     
T Consensus        82 ~---~l~~a~~e~~~~~tG~~~G~v~P~gl~~----~v~v~iD~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~-----  149 (158)
T 2z0x_A           82 G---PLRQATPEEVRELTGFAIGGVPPVGHNT----PLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTG-----  149 (158)
T ss_dssp             S---CEEECCHHHHHHHHSSCTTSCCSSCCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHC-----
T ss_pred             C---CcEECCHHHHHHHhCCCCccCCcCCCCC----CCcEEEEhHHhcCCcEEEECCCCCEEEEECHHHHHHHhC-----
Confidence            7   4999999999999999999999999973    799999999999999999999999999999999999987     


Q ss_pred             CEEEEccC
Q 021074          159 PAYVDLEA  166 (317)
Q Consensus       159 p~~VD~sa  166 (317)
                      ..|+|++.
T Consensus       150 ~~~~di~~  157 (158)
T 2z0x_A          150 AQVADLKE  157 (158)
T ss_dssp             CEEECCBC
T ss_pred             CEEEEeec
Confidence            46888874

>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1

Probab=99.97  E-value=1e-30  Score=222.29  Aligned_cols=148  Identities=17%  Similarity=0.287  Sum_probs=139.8

Q ss_pred             HHHHHHHHhCCCCeEEEEcCCC-CCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCcc
Q 021074            6 DQLLARLKDLQIEFSQYEHPAV-MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL   84 (317)
Q Consensus         6 e~V~~~L~klgI~ye~veHp~~-~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~L   84 (317)
                      ++++++|+++||+|+.++||+. .|++++|+++|+++++++|||++++++++++++++|||+++|++|+++.+| +  ++
T Consensus         3 ~~~~~~L~~~~i~~~~~~~p~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~~l~vv~gd~~ld~~kl~~~~g-~--~l   79 (152)
T 1wdv_A            3 EKVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPGDKRLNINSMKELAG-K--PV   79 (152)
T ss_dssp             CHHHHHHHHHTCCCEEEECSSCCSSHHHHHHHHTSCGGGBEEEEEEEETTSCEEEEEEETTCCBCHHHHHHHHT-S--CE
T ss_pred             HHHHHHHHHCCCCcEEEEcCCCCCCHHHHHHHcCCCHHHeEEEEEEEeCCCcEEEEEEECchhhCHHHHHHHHC-C--Cc
Confidence            5799999999999999999998 999999999999999999999999866789999999999999999999999 4  79


Q ss_pred             ccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCEEEEc
Q 021074           85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL  164 (317)
Q Consensus        85 r~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~~VD~  164 (317)
                      +||+++++.++|||.+|+|+|||+.+    ++++|+|+++...+.|++++|.++.++.++++||.+++.     ..|+|+
T Consensus        80 ~~a~~~e~~~~tG~~~G~v~P~g~~~----~v~v~~D~~l~~~~~v~~~~g~~~~~~~v~~~dl~~~~~-----~~~~di  150 (152)
T 1wdv_A           80 RLARANEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATG-----AVVADV  150 (152)
T ss_dssp             EECCHHHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECC
T ss_pred             eeCCHHHHHHHhCCCCCCCCcCCCCC----CCcEEEehHHhcCCeEEEcCCCCCeEEEECHHHHHHHhC-----CEEEee
Confidence            99999999999999999999999974    799999999999999999999999999999999999986     457887


Q ss_pred             c
Q 021074          165 E  165 (317)
Q Consensus       165 s  165 (317)
                      +
T Consensus       151 ~  151 (152)
T 1wdv_A          151 S  151 (152)
T ss_dssp             B
T ss_pred             e
Confidence            5

>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A

Probab=99.97  E-value=8.2e-30  Score=218.53  Aligned_cols=151  Identities=15%  Similarity=0.241  Sum_probs=136.0

Q ss_pred             HHHHHHHHhCCCCeEEE--EcCCC--CCHHHHHHHhCCCCCceeeEEEEEe--cCCcEEEEEEecCCCCcHHHHHHHhCC
Q 021074            6 DQLLARLKDLQIEFSQY--EHPAV--MTVEAQAKYVGNIGGGLSKNLFLKD--KKHRFYIVSALADTKVDMKVLSQRLGL   79 (317)
Q Consensus         6 e~V~~~L~klgI~ye~v--eHp~~--~TieeaAk~lg~~~~qivKtLvLkd--kkg~~vLVVl~gD~kVDlkKLak~LG~   79 (317)
                      ++++++|+++||+|+++  +|++.  .|++++|+.+|+++++++|||+++.  ++++++++++|+|+++|++|+++.+|.
T Consensus         2 t~~~~~L~~~~i~~~~~~~~~~~~~~~t~~e~a~~l~~~~~~~~Ktl~~~~~~~~~~~~lvv~~gd~~ld~~kl~~~~g~   81 (158)
T 1dbu_A            2 TPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLVAENGDQKKLACFVLATANMLNLKKAAKSIGV   81 (158)
T ss_dssp             CHHHHHHHHHTCCCEEEECCCCCC-----CHHHHHHTCCGGGEEEEEEEEETTCTTSEEEEEEETTSCBCHHHHHHHHTC
T ss_pred             ChHHHHHHHCCCCeEEEEEccCCcccchHHHHHHHcCCCHhHeEEEEEEEecCCCCcEEEEEEECCceeCHHHHHHHhCC
Confidence            47899999999999996  56665  6899999999999999999999985  345799999999999999999999998


Q ss_pred             CCCccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCC
Q 021074           80 GKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP  159 (317)
Q Consensus        80 kr~~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p  159 (317)
                      +  +++||+++++.++|||.+|+|+|||+.    .++++|+|+++...+.|++|+|.++.++.|+++||.+++.     .
T Consensus        82 ~--~l~~a~~e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~~~v~~~dl~~~~~-----~  150 (158)
T 1dbu_A           82 K--KVEMADKDAAQKSTGYLVGGISPLGQK----KRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLG-----A  150 (158)
T ss_dssp             S--CEEECCHHHHHHHHSSCTTSCCSSSCS----SCCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHT-----C
T ss_pred             C--CeeeCCHHHHHHHhCCCCccCCCCCCC----CCCEEEEEhHHhcCCeEEEeCCCCCcEEEECHHHHHHHhC-----C
Confidence            6  799999999999999999999999986    3799999999999999999999999999999999999987     4


Q ss_pred             EEEEccCC
Q 021074          160 AYVDLEAN  167 (317)
Q Consensus       160 ~~VD~sa~  167 (317)
                      .|+||+.+
T Consensus       151 ~~~di~~~  158 (158)
T 1dbu_A          151 EFTDIVDE  158 (158)
T ss_dssp             EEECCBCC
T ss_pred             EEEeeecC
Confidence            68888753

>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli}

Probab=99.96  E-value=3.9e-29  Score=216.72  Aligned_cols=150  Identities=17%  Similarity=0.265  Sum_probs=137.8

Q ss_pred             HHHHHHHHhCCCCeEE--EEcCC--CCCHHHHHHHhCCCCCceeeEEEEEecCC--cEEEEEEecCCCCcHHHHHHHhCC
Q 021074            6 DQLLARLKDLQIEFSQ--YEHPA--VMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGL   79 (317)
Q Consensus         6 e~V~~~L~klgI~ye~--veHp~--~~TieeaAk~lg~~~~qivKtLvLkdkkg--~~vLVVl~gD~kVDlkKLak~LG~   79 (317)
                      ++++++|+++||+|++  ++|++  ..|++++|+.+|+++++++|||+++++++  +++++++|+|+++|++|+++.+|.
T Consensus         9 t~~~~~L~~~~i~y~~~~~~h~~~~~~~~~e~a~~l~~~~~~~~Ktlv~~~~~~~~~~~lvvv~gd~~ld~~kl~~~lg~   88 (166)
T 2dxa_A            9 TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGA   88 (166)
T ss_dssp             CHHHHHHHHTTCCCEEEECCCCTTSCCSSCHHHHHHTCCTTTEEEEEEEEETTEEEEEEEEEEETTSEECHHHHHHHHTC
T ss_pred             hHHHHHHHHCCCCcEEEEEecCCcccchHHHHHHHcCCCHHHeeEEEEEEeCCCCceEEEEEEeCCceeCHHHHHHHhCC
Confidence            6899999999999998  55876  37889999999999999999999998642  499999999999999999999998


Q ss_pred             CCCccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCC
Q 021074           80 GKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP  159 (317)
Q Consensus        80 kr~~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p  159 (317)
                      +  +++||+++++.+++||.+|+|+|||+.    .++++|+|+++...+.|++|+|.++..+.|+++||.+++.     .
T Consensus        89 ~--~l~~a~~e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~i~~~~~dl~~~~~-----~  157 (166)
T 2dxa_A           89 K--KVEMADPMVAQRSTGYLVGGISPLGQK----KRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILD-----A  157 (166)
T ss_dssp             S--CEEECCHHHHHHHHSSCTTCCCSSSCS----SCCCEEEEGGGGGSSCEEEEEEETTEEEEECHHHHHHHHT-----C
T ss_pred             C--ceEECCHHHHHHccCCCCccCCCcCCC----CCCeEEEEhHHhcCCeEEEcCCCCCcEEEECHHHHHHHhC-----C
Confidence            6  799999999999999999999999996    3799999999999999999999999999999999999987     3


Q ss_pred             EEEEccC
Q 021074          160 AYVDLEA  166 (317)
Q Consensus       160 ~~VD~sa  166 (317)
                      .|+||+.
T Consensus       158 ~~~di~~  164 (166)
T 2dxa_A          158 KFADIAR  164 (166)
T ss_dssp             EEECCEE
T ss_pred             EEEEEec
Confidence            5888874

>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}

Probab=99.89  E-value=2.1e-23  Score=207.10  Aligned_cols=135  Identities=17%  Similarity=0.248  Sum_probs=124.3

Q ss_pred             CCCcHHHHHHHHHhC--CCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhC
Q 021074            1 MAYSKDQLLARLKDL--QIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG   78 (317)
Q Consensus         1 M~~s~e~V~~~L~kl--gI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG   78 (317)
                      |.+. ++++++|+++  ||+|+.++              |+++++++|||+++++++ |+++++|++++||++++++.+|
T Consensus         2 M~~~-~~v~~~L~~~~~~i~y~~~~--------------g~~~~~i~Ktl~~~~~~~-~~l~v~p~~~~ldlk~l~~~~g   65 (457)
T 3mem_A            2 MELP-VVVQQALGDNAPGVSFRSVS--------------QIDTGHLLRMVLLSDDQG-NLQAICRRNDMLDLEALNKRLG   65 (457)
T ss_dssp             -CCC-HHHHHHHTTSCTTCEEEECC--------------SSCGGGBEEEEEEEETTE-EEEEEEETTSEECHHHHHHHHT
T ss_pred             CCch-HHHHHHHHhCCCCCceEEeC--------------CCCHhHeeeEEEEEECCc-EEEEEecCCCeeCHHHHHHHhC
Confidence            4444 7899999999  99999877              678999999999999765 9999999999999999999999


Q ss_pred             CCCCccccCCHHHHHHhc-CCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCC
Q 021074           79 LGKGGLRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGR  157 (317)
Q Consensus        79 ~kr~~Lr~AseEeL~e~l-G~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~  157 (317)
                      .   +++|++++++.++| ||.+|+|||||+.+    ++++|+|+++.+.+.||+++|+++.++.|+++||.+++.+.+|
T Consensus        66 ~---k~~~~~~~~~~~~~~g~~~Ggv~P~g~~~----~~~~~iD~~l~~~~~i~~~~G~~~~~i~l~~~dl~~~~~~~~~  138 (457)
T 3mem_A           66 R---DLRMMQRREQVRVRQKAGLQELPALPSLT----GWPTVVDRRVDELEAVALELGEQDLGLMMPAEDFRQLTAKAAR  138 (457)
T ss_dssp             C---CCEECCHHHHHHHHHHHTCSSCCSCGGGT----CCCEEEEHHHHHCSEEEEECSSSSEEEEEEHHHHHHHTTTSEE
T ss_pred             C---CCeeCCHHHHHHHcCCCCCCCCCCCCCCc----CCCEEEehhhccCCEEEEECCCCCceEEECHHHHHHHHccCCc
Confidence            7   49999999999998 69999999999985    7999999999999999999999999999999999999987666


Q ss_pred             C
Q 021074          158 D  158 (317)
Q Consensus       158 ~  158 (317)
                      .
T Consensus       139 ~  139 (457)
T 3mem_A          139 H  139 (457)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*

Probab=99.27  E-value=8.8e-11  Score=118.79  Aligned_cols=108  Identities=20%  Similarity=0.233  Sum_probs=97.7

Q ss_pred             CCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCccccCCHHHHHHhcCCCceecC
Q 021074           25 PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVT  104 (317)
Q Consensus        25 p~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~Lr~AseEeL~e~lG~~pG~Vs  104 (317)
                      |...|++++++.+|+++.+++|+|+++.+ ++++++++++|+++|++++.+.+|.+  .+.++..+++.+++|+..|+++
T Consensus       258 ~~~~ti~~l~~~lg~~~~~i~K~l~~~~~-~~~~~vli~gd~el~~~kl~~~l~~~--~l~~a~~~el~~~~g~~~g~~~  334 (572)
T 2j3l_A          258 PEVGTIAEVANFFEVEPQRIIKSVLFIAD-EEPVMVLVRGDHDVNDVKLKNFLGAD--FLDEATEEDARRVLGAGFGSIG  334 (572)
T ss_dssp             TTCCSHHHHHHHHTCCGGGBEEEEEEEET-TEEEEEEEETTCCBCHHHHHHHHTCS--CEEECCHHHHHHHHSSCTTSCC
T ss_pred             CCCCcHHHHHHHhCcCHHHeEEEEEEEeC-CcEEEEEeeCccccCHHHHHHhhCCC--ccccCCHHHHHHhhCCCccccC
Confidence            34567999999999999999999999985 47999999999999999999999975  6999999999999999999999


Q ss_pred             CCcccCCCCCCeEEEEecccccCCeEEeecCCCcc
Q 021074          105 PFALVNESARDVALLLDKGFKAQERCFFHPLSNDM  139 (317)
Q Consensus       105 PfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~  139 (317)
                      |+|+.    +++++++|.++.....+++++|..+.
T Consensus       335 p~gl~----~~i~~~iD~sl~r~~~~~~ga~~~~~  365 (572)
T 2j3l_A          335 PVNVS----EDVKIYADLAVQDLANAIVGANEDGY  365 (572)
T ss_dssp             STTCC----TTCEEEEETTTTTCCSEEEECSSTTE
T ss_pred             CccCC----CCCcEEEehhhhcCCceEEccCCCCc
Confidence            99986    37999999999999999999986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	317
d1vjfa_	168	d.116.1.1 (A:) Hypothetical protein CC0111 {Caulob	8e-40
d1vkia_	165	d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrob	3e-37
d1wdva_	150	d.116.1.1 (A:) Hypothetical protein APE2540 {Aerop	1e-11

>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter crescentus [TaxId: 155892]} Length = 168

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein CC0111
species: Caulobacter crescentus [TaxId: 155892]

 Score =  135 bits (341), Expect = 8e-40
 Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 2/168 (1%)

Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
           ++  L A      ++    +HP V  VE   +    + GG +KNLFLKD K + +++SAL
Sbjct: 3   TRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISAL 62

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            +T +D+K L   +G G+  L   P+E MLE L V  GSVT F L+N++ + V  +LDK 
Sbjct: 63  GETTIDLKKLHHVIGSGR--LSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKA 120

Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVG 171
               +   FHPL ND + +++   L +FL ++G +P  VD  A   VG
Sbjct: 121 LADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFAAMEVVG 168

>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrobacterium tumefaciens, strain C58 [TaxId: 358]} Length = 165

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein Atu3699
species: Agrobacterium tumefaciens, strain C58 [TaxId: 358]

 Score =  129 bits (324), Expect = 3e-37
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 1/161 (0%)

Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
           +  +L   L  L I  +  +H  V TV         I GG +KNLF+KDKK ++++++  
Sbjct: 4   TATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVE 63

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            +  VD+K + + +G     +     E MLE L V  GSVT F  +N++AR V  +LD  
Sbjct: 64  ENAVVDLKSVHKTIGAASR-VSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSD 122

Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 164
               E    HPLSND + ++ + DL +FL++ G  P  + +
Sbjct: 123 LLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVLKV 163

>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum pernix [TaxId: 56636]} Length = 150

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein APE2540
species: Aeropyrum pernix [TaxId: 56636]

 Score = 59.7 bits (144), Expect = 1e-11
 Identities = 23/149 (15%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 6   DQLLARLKDLQIEFSQYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALA 64
           +++   +K   + +          TV   A  +G     + K L + D     Y V    
Sbjct: 1   EKVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPG 60

Query: 65  DTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF 124
           D ++++  + +        +R+A    ++E+   P+G V P AL      ++ L++D+  
Sbjct: 61  DKRLNINSMKEL---AGKPVRLARANEVVELTGYPVGGVPPVALPP----NIVLVVDRIL 113

Query: 125 KAQERCFFHPLSNDMSISLNTNDLDKFLK 153
            ++++ +      +  +  +  +L +   
Sbjct: 114 LSRKKVYGGGGRENALLEFSPRELVEATG 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1vjfa_	168	Hypothetical protein CC0111 {Caulobacter crescentu	100.0
d1vkia_	165	Hypothetical protein Atu3699 {Agrobacterium tumefa	100.0
d1wdva_	150	Hypothetical protein APE2540 {Aeropyrum pernix [Ta	99.98
d1dbxa_	157	Hypothetical protein HI1434 (YbaK homologue) {Haem	99.97

>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein CC0111
species: Caulobacter crescentus [TaxId: 155892]

Probab=100.00  E-value=3.1e-39  Score=280.07  Aligned_cols=166  Identities=37%  Similarity=0.654  Sum_probs=160.8

Q ss_pred             cHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCc
Q 021074            4 SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG   83 (317)
Q Consensus         4 s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~   83 (317)
                      +.++++++|+++||+|++++||++.|++|+++.++..+++++|||++++++++|+++++++|+++|++++++++|.+  +
T Consensus         3 ~~~~l~~~L~~~~I~y~~~~H~~~~t~~e~a~~~~~~~~~~~K~l~l~~~~~~~~l~v~~~d~~~~~k~l~~~lg~~--~   80 (168)
T d1vjfa_           3 TRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGSG--R   80 (168)
T ss_dssp             CHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEEEEEEETTSCEEEEEEETTCCCCTTTHHHHHTCS--C
T ss_pred             cHHHHHHHHHHCCCCeEEEECCCcCCHHHHHHhcCCCccceEEEEEEEecCcceEEEEecchhhcchHHHHHHhccc--c
Confidence            46899999999999999999999999999999999999999999999998888999999999999999999999987  7


Q ss_pred             cccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCEEEE
Q 021074           84 LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVD  163 (317)
Q Consensus        84 Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~~VD  163 (317)
                      ++||++|++++++||.+|+|||||+.+|..+.+++|+|+++...+.||||||+|+.+|.|+++||.+|++++||.|.|+|
T Consensus        81 ~~~a~~e~~~~~~G~~~G~v~Pfg~~~d~~~~v~v~iD~~l~~~~~i~~~~g~~~~ti~l~~~dl~k~l~~~~~~p~~~d  160 (168)
T d1vjfa_          81 LSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVD  160 (168)
T ss_dssp             EEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEEE
T ss_pred             ccccCHHHHHHccCCCCCcccccccccCCccCcceeechhHhcCCEEEEeCCCCCeEEEECHHHHHHHHHHcCCCcEEEE
Confidence            99999999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCC
Q 021074          164 LEANPAVG  171 (317)
Q Consensus       164 ~sa~~~~g  171 (317)
                      |++.+++|
T Consensus       161 ~~~~~~~~  168 (168)
T d1vjfa_         161 FAAMEVVG  168 (168)
T ss_dssp             TTTTEEC-
T ss_pred             cccCCCCC
Confidence            99999987

>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrobacterium tumefaciens, strain C58 [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein Atu3699
species: Agrobacterium tumefaciens, strain C58 [TaxId: 358]

Probab=100.00  E-value=2.1e-38  Score=274.34  Aligned_cols=163  Identities=33%  Similarity=0.528  Sum_probs=157.0

Q ss_pred             CcHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCC
Q 021074            3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG   82 (317)
Q Consensus         3 ~s~e~V~~~L~klgI~ye~veHp~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~   82 (317)
                      ++.++++++|+++||+|+.++|+++.|++|+++..|..+++++|||||++++++|+|+++++|+++|++++++.+|..+ 
T Consensus         3 ~t~~~l~~~L~~~~I~y~~~~H~~~~t~eea~~~~~~~~~~~~KtL~l~~k~~~~~l~vv~~d~~vd~~~l~~~~g~~k-   81 (165)
T d1vkia_           3 KTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENAVVDLKSVHKTIGAAS-   81 (165)
T ss_dssp             CCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEEEEEECTTCCEEEEEEETTCCBCTTTHHHHHTCSS-
T ss_pred             cCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHhcCCCccceeEEEEEEecCCceEEEEEeCccccCHHHHHHHhccch-
Confidence            5789999999999999999999999999999999999999999999999988999999999999999999999999632 


Q ss_pred             ccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCEEE
Q 021074           83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV  162 (317)
Q Consensus        83 ~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~~V  162 (317)
                      +++||++|++.+++||.+|+|||||+.||..+.+++|+|+++...+.||||||+|+.+|.|+++||.++++++||.|.|+
T Consensus        82 ~l~~a~~e~~~~~~g~~~G~V~Pfg~~~d~~~~v~viiD~~l~~~~~i~~~~g~~~~ti~i~~~dl~k~l~~~~h~~~~~  161 (165)
T d1vkia_          82 RVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVL  161 (165)
T ss_dssp             SCEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCEEE
T ss_pred             hccccCHHHHHHhhCCCcccccchhhccCcccccceehhhHHhcCCEEEEeCCCCCeEEEECHHHHHHHHHHcCCCeEEE
Confidence            79999999999999999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             EccC
Q 021074          163 DLEA  166 (317)
Q Consensus       163 D~sa  166 (317)
                      ||+.
T Consensus       162 ~~~e  165 (165)
T d1vkia_         162 KVSE  165 (165)
T ss_dssp             CCBC
T ss_pred             eCCC
Confidence            9974

>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein APE2540
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.98  E-value=4.2e-32  Score=231.38  Aligned_cols=149  Identities=17%  Similarity=0.291  Sum_probs=139.9

Q ss_pred             HHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHhCCCCCceeeEEEEEecCCcEEEEEEecCCCCcHHHHHHHhCCCCCcc
Q 021074            6 DQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL   84 (317)
Q Consensus         6 e~V~~~L~klgI~ye~veHp-~~~TieeaAk~lg~~~~qivKtLvLkdkkg~~vLVVl~gD~kVDlkKLak~LG~kr~~L   84 (317)
                      ++|.++|+++||+|++++|+ ++.|++|+|+++|+++++++|||+|++++++++|++++||+++|++++++.+| +  ++
T Consensus         1 erv~~~L~~~~i~~~~~~~~~~~~t~~e~a~~lgv~~~~i~Ktlv~~~~~~~~~l~vv~gd~~vd~~kl~~~~g-~--~l   77 (150)
T d1wdva_           1 EKVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPGDKRLNINSMKELAG-K--PV   77 (150)
T ss_dssp             CHHHHHHHHHTCCCEEEECSSCCSSHHHHHHHHTSCGGGBEEEEEEEETTSCEEEEEEETTCCBCHHHHHHHHT-S--CE
T ss_pred             ChHHHHHHhCCCCcEEEECCCCCCcHHHHHHHcCCCHHHhEeeEEEEecCCCEEEEEeccceEecHHHhhhhhh-c--cc
Confidence            47999999999999999987 68899999999999999999999999988899999999999999999999988 3  69


Q ss_pred             ccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCEEEEc
Q 021074           85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL  164 (317)
Q Consensus        85 r~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~~VD~  164 (317)
                      +||+++++.++|||.+|+|+|||+.+    ++++|+|+++...+.||+++|+++..+.|+++||.++++     ..++|+
T Consensus        78 ~~a~~~e~~~~tG~~~G~v~P~g~~~----~~~v~iD~~l~~~~~v~~~aG~~~~~~~i~~~dL~~~~~-----~~~~di  148 (150)
T d1wdva_          78 RLARANEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATG-----AVVADV  148 (150)
T ss_dssp             EECCHHHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECC
T ss_pred             ccCCHHHHHHhcCCCcceeecccCCC----CCeEEEEhHHhcCCeEEEeCCCCCeEEEECHHHHHHHHC-----CEEEec
Confidence            99999999999999999999999984    799999999999999999999999999999999999986     567877


Q ss_pred             cC
Q 021074          165 EA  166 (317)
Q Consensus       165 sa  166 (317)
                      ++
T Consensus       149 ~~  150 (150)
T d1wdva_         149 SE  150 (150)
T ss_dssp             BC
T ss_pred             cC
Confidence            63

>d1dbxa_ d.116.1.1 (A:) Hypothetical protein HI1434 (YbaK homologue) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein HI1434 (YbaK homologue)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=6.8e-30  Score=218.74  Aligned_cols=150  Identities=15%  Similarity=0.231  Sum_probs=135.5

Q ss_pred             HHHHHHHhCCCCeEEEE--cCCCC--CHHHHHHHhCCCCCceeeEEEEEec--CCcEEEEEEecCCCCcHHHHHHHhCCC
Q 021074            7 QLLARLKDLQIEFSQYE--HPAVM--TVEAQAKYVGNIGGGLSKNLFLKDK--KHRFYIVSALADTKVDMKVLSQRLGLG   80 (317)
Q Consensus         7 ~V~~~L~klgI~ye~ve--Hp~~~--TieeaAk~lg~~~~qivKtLvLkdk--kg~~vLVVl~gD~kVDlkKLak~LG~k   80 (317)
                      .+.++|+++||+|++++  |++..  +.+++|+.+|+++++++|||+|+++  +++|+++++++|+++|++++++.+|.+
T Consensus         2 ~a~~~L~~~~I~y~~~~~~h~~~~~~~~~e~A~~lg~~~~~i~Ktlv~~~~~~~~~~~~~v~~~d~~vd~~kl~~~~~~~   81 (157)
T d1dbxa_           2 PAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLVAENGDQKKLACFVLATANMLNLKKAAKSIGVK   81 (157)
T ss_dssp             HHHHHHHHHTCCCEEEECCCCC-----CCHHHHHHTCCGGGBEEEEEEEETTCTTSEEEEEEETTSCBCHHHHHHHHTCS
T ss_pred             HHHHHHHHCCCCCEEEeeecCCCccchHHHHHHHcCCCccceeEEEEEEeecCCCeEEEEEeCCCCEECHHHHHHHhCCc
Confidence            47889999999999874  66643  4588999999999999999999974  357999999999999999999999987


Q ss_pred             CCccccCCHHHHHHhcCCCceecCCCcccCCCCCCeEEEEecccccCCeEEeecCCCcceEEecHHHHHHHHHhcCCCCE
Q 021074           81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA  160 (317)
Q Consensus        81 r~~Lr~AseEeL~e~lG~~pG~VsPfGL~nd~~~~V~ViID~sL~~~~~I~~h~G~n~~tI~Is~~DL~kll~a~g~~p~  160 (317)
                        +++||++|++.+++||.+|+|+|||+.+    ++++|+|+++..++.||+++|+++.+|.|+++||.++++     ..
T Consensus        82 --~~~~a~~e~~~~~tG~~~G~v~P~g~~~----~i~v~iD~~l~~~~~v~~~aG~~~~~i~i~~~dl~~l~~-----~~  150 (157)
T d1dbxa_          82 --KVEMADKDAAQKSTGYLVGGISPLGQKK----RVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLG-----AE  150 (157)
T ss_dssp             --CEEECCHHHHHHHHSCCTTCCCSSSCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHT-----CE
T ss_pred             --ccccCCHHHHHHccCCccceeecccccc----cchHHHhHHHhhCCEEEEeCCCCCeEEEECHHHHHHHhC-----CE
Confidence              7999999999999999999999999985    799999999999999999999999999999999999997     47


Q ss_pred             EEEccCC
Q 021074          161 YVDLEAN  167 (317)
Q Consensus       161 ~VD~sa~  167 (317)
                      +.|++.+
T Consensus       151 v~di~e~  157 (157)
T d1dbxa_         151 FTDIVDE  157 (157)
T ss_dssp             EECCBCC
T ss_pred             EEeeecC
Confidence            8888764