Citrus Sinensis ID: 021082

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MSKANVRRHILEKNRSPKEKEPKPTQSLLSKHLKKVYPIGLHRSSSSLSLSSLSLSLSQNSNDSSVTDNSNSPLEQRISLALRLITPPERREVTVAKNAQPQQQQQQQQQQSQDSCCGELKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAERPWRHI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccccccccccHHHcccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHccccccccccHHHcccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccHHHHHccHcccHccHHHccEccccccccccccEcccEEEEcccccccccccccccccHHHHHHHHHHHccccHcccccccccccccHHHHccccccccccccccccccccccccccEEEEEccHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccEEcccccHHccccccHHHHHHHHHHHHccccEccHHHHHHHHHHHccccccccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mskanvrrhileknrspkekepkptqsLLSKHLkkvypiglhrsssslslSSLSLSlsqnsndssvtdnsnsplEQRISLALRlitpperrevtvaknaqpqqQQQQQQQQsqdsccgelkrcnwitknsDKVYVAFHdecwgvpvyddnqLFELLALSGMLMDYNWTEILKRKELFReafggfdpksvakMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGsfssfmwgyvnfkpminkfryprnvplrspkaEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCfrysecvslaerpwrhi
Flexible Loop (DISEMBL)
mskanvrrhileknrspkekepkptqsllsKHLKKVYPIGLHRSSSSLSLSSLSLSLSQNSndssvtdnsnsplEQRISLALRLITPPERREVTVAKNAQPQQQQQQQQQQSQDSCCGELKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGgfdpksvakmgEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFryprnvplrspkAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSEcvslaerpwrhi
Low Complexity Region (SEG)
MSKANVRRHILEKNRSPKEKEPKPTQSLLSKHLKKVYPIGLHRsssslslsslslslsqnsndssvtdnsnsPLEQRISLALRLITPPERREVTVAKNAqpqqqqqqqqqqsqDSCCGELKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAERPWRHI
Disordered region (IsUnstruct)
*******************************************************************************************************************CCGELKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAE******
Disordered Region (DISOPRED)
*************************************************************************************************************************RCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLA*******
Disordered Region (DISEMBL)
MSKANVRRHILEKN*************LLSKHLKKVYPIGLHRSS***************************PLEQRISLALRLITPPERRE*************************GELKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAERPWRHI
Disordered Region (DISPRO)
**************RSPKEKEPKPTQSLLSKHLKKVYPIGLH****************************NSPLEQRISLALRLITP*********************************KRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAER*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKANVRRHILEKNRSPKEKEPKPTQSLLSKHLKKVYPIGLHRSSSSLSLSSLSLSLSQNSNDSSVTDNSNSPLEQRISLALRLITPPERREVTVAKNAQPQQQQQQQQQQSQDSCCGELKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAERPWRHI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q7VG78	1375	Probable GMP synthase [gl	yes	no	0.605	0.139	0.395	6e-40
P44321	185	DNA-3-methyladenine glyco	yes	no	0.558	0.956	0.385	1e-34
P05100	187	DNA-3-methyladenine glyco	N/A	no	0.574	0.973	0.353	2e-34

>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1

 Score =  164 bits (416), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 115/197 (58%), Gaps = 5/197 (2%)

Query: 111 QSQDSCCG--ELKRCNWITKNSD---KVYVAFHDECWGVPVYDDNQLFELLALSGMLMDY 165
           ++QDS  G  E  RC W T   +   K+Y  +HD  WG P+++D +LFE L L G     
Sbjct: 774 EAQDSNEGVREKVRCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGL 833

Query: 166 NWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVK 225
           +W  ILK++E FR AF  FDP  VA   E +I E+  N  I+    ++   + NAK  + 
Sbjct: 834 SWITILKKREAFRVAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMA 893

Query: 226 ILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYS 285
           +  EFGSF  ++WG+V  KP+IN F    ++P  +P ++ I++DL KRGF+ VG   +Y+
Sbjct: 894 VQREFGSFDKYIWGFVGGKPIINAFESIADLPASTPLSDKIAKDLKKRGFKFVGTTTMYA 953

Query: 286 FMQAAGLTIDHLVDCFR 302
            MQ+ G+  DHL  CF+
Sbjct: 954 MMQSIGMVNDHLTSCFK 970

Catalyzes the synthesis of GMP from XMP.
Helicobacter hepaticus (strain ATCC 51449 / 3B1) (taxid: 235279)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 2

>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 2/179 (1%)

Query: 122 RCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAF 181
           RC W+ + S  +Y+ +HD+ WG P +D  +LFE + L G     +W  +LK++E +REAF
Sbjct: 4   RCPWVGEQS--IYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYREAF 61

Query: 182 GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYV 241
             FDPK +AKM   +I     N+ ++    ++  IV NAK  + +     +FS F+W +V
Sbjct: 62  HQFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVKNAKAYLAMEKCGENFSDFIWSFV 121

Query: 242 NFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 300
           N KP++N     R+VP ++  ++A+S+ L KRGF  +G    Y+FMQ+ GL  DHL DC
Sbjct: 122 NHKPIVNDVPDLRSVPTKTEVSKALSKALKKRGFVFIGETTCYAFMQSMGLVDDHLNDC 180

Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

EC: 0

>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12) GN=tag PE=1 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 108/184 (58%), Gaps = 2/184 (1%)

Query: 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
           ++RC W+++  D +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R 
Sbjct: 1   MERCGWVSQ--DPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRA 58

Query: 180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
            F  FDP  VA M E+++  +  +  I+    +++ I+ NA+  +++      F  F+W 
Sbjct: 59  CFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFVWS 118

Query: 240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
           +VN +P + +      +P  +  ++A+S+ L KRGF+ VG  I YSFMQA GL  DH+V 
Sbjct: 119 FVNHQPQVTQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVG 178

Query: 300 CFRY 303
           C  Y
Sbjct: 179 CCCY 182

Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions.

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

EC: 0

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:1006230719	311	AT1G13635 [Arabidopsis thalian	0.977	0.996	0.619	2.3e-101
TAIR|locus:2174373	347	AT5G57970 [Arabidopsis thalian	0.605	0.553	0.510	5.9e-57
TAIR|locus:2037268	329	AT1G75090 [Arabidopsis thalian	0.615	0.592	0.523	9.6e-57
TAIR|locus:2025697	327	AT1G80850 [Arabidopsis thalian	0.694	0.672	0.466	3.4e-54
TAIR|locus:2200447	352	AT1G15970 [Arabidopsis thalian	0.602	0.542	0.523	1.1e-53
TAIR|locus:2156329	353	AT5G44680 [Arabidopsis thalian	0.593	0.532	0.484	2.3e-52
TAIR|locus:2087710	312	AT3G12710 [Arabidopsis thalian	0.602	0.612	0.471	6.9e-47
TIGR_CMR|GSU_0567	191	GSU_0567 "DNA-3-methyladenine	0.580	0.963	0.392	6.1e-39
TIGR_CMR|CBU_0383	212	CBU_0383 "DNA-3-methyladenine	0.589	0.882	0.370	4.3e-38
TIGR_CMR|SO_0016	191	SO_0016 "DNA-3-methyladenine g	0.577	0.958	0.383	1e-36

TAIR|locus:1006230719 AT1G13635 [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 197/318 (61%), Positives = 230/318 (72%)

Query:     1 MSKANVRR-HILEKNRSPKEKEPKPTQSLLSKHLKKVYPIGLHRXXXXXXXXXXXXXXXX 59
             M KA+ +R  I+EK++S +EKE K   +  +KHLK++YPI L R                
Sbjct:     1 MYKASPKRKEIVEKSKSVREKEIKQNSNFFAKHLKRIYPITLQRSTSSSFSLSSISLSLS 60

Query:    60 XXXXXXXXXXXXXPLEQRISLALRLITPPERREVTVAKNAXXXXXXXXXXXXXXDSCCGE 119
                           LEQ+ISLAL LI+ P RRE+ V K+                    E
Sbjct:    61 QNSTDSVSTDSNSTLEQKISLALGLISSPHRREIFVPKSIPQQLCQDFNSSD-------E 113

Query:   120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
              KRCNWITK SD+VYV FHD+ WGVPVYDDN LFE LA+SGMLMDYNWTEILKRKE FRE
Sbjct:   114 PKRCNWITKKSDEVYVMFHDQQWGVPVYDDNLLFEFLAMSGMLMDYNWTEILKRKEHFRE 173

Query:   180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
             AF  FDP  VAKMGEKEI EI+SN AIML E RVRCIVDNAKCI K++NEFGSFSSF+WG
Sbjct:   174 AFCEFDPNRVAKMGEKEIAEIASNKAIMLQESRVRCIVDNAKCITKVVNEFGSFSSFVWG 233

Query:   240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
             ++++KP+INKF+Y RNVPLRSPKAE IS+D++KRGFR VGPVIV+SFMQAAGLTIDHLVD
Sbjct:   234 FMDYKPIINKFKYSRNVPLRSPKAEIISKDMIKRGFRFVGPVIVHSFMQAAGLTIDHLVD 293

Query:   300 CFRYSECVSLAERPWRHI 317
             CFR+ +CVSLAERPWRHI
Sbjct:   294 CFRHGDCVSLAERPWRHI 311

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA

TAIR|locus:2174373 AT5G57970 [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 98/192 (51%), Positives = 141/192 (73%)

Query:   121 KRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 180
             KRC W+T NSD  Y+ FHDE WGVPV+DD +LFELL LSG L ++ W  IL +++ FRE 
Sbjct:   154 KRCTWVTPNSDPCYIVFHDEEWGVPVHDDKRLFELLVLSGALAEHTWPTILSKRQAFREV 213

Query:   181 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 240
             F  FDP ++ K+ EK+I+   S  + +L++ ++R +++NA+ I+K++ E+GSF  ++W +
Sbjct:   214 FADFDPNAIVKINEKKIIGPGSPASTLLSDLKLRAVIENARQILKVIEEYGSFDKYIWSF 273

Query:   241 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 300
             V  K +++KFRY R VP ++PKAE IS+DL++RGFR VGP +VYSFMQAAG+T DHL  C
Sbjct:   274 VKNKAIVSKFRYQRQVPAKTPKAEVISKDLVRRGFRSVGPTVVYSFMQAAGITNDHLTSC 333

Query:   301 FRYSECVSLAER 312
             FR+  C+   ER
Sbjct:   334 FRFHHCIFEHER 345

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TAIR|locus:2037268 AT1G75090 [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 102/195 (52%), Positives = 144/195 (73%)

Query:   118 GELKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELF 177
             G +KRC+WIT NSD +YV FHDE WGVPV DD +LFELL  S  L +++W  IL+R++ F
Sbjct:   116 GPVKRCHWITPNSDPIYVLFHDEEWGVPVRDDKKLFELLVFSQALAEFSWPSILRRRDDF 175

Query:   178 REAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFM 237
             R+ F  FDP ++A+  EK ++ +  N  ++L+E ++R IV+NAK ++K+  EFGSFS++ 
Sbjct:   176 RKLFEEFDPSAIAQFTEKRLMSLRVNGCLILSEQKLRAIVENAKSVLKVKQEFGSFSNYC 235

Query:   238 WGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHL 297
             W +VN KP+ N +RY R VP++SPKAE IS+D+++RGFR VGP ++YSF+QA+G+  DHL
Sbjct:   236 WRFVNHKPLRNGYRYGRQVPVKSPKAEYISKDMMQRGFRCVGPTVMYSFLQASGIVNDHL 295

Query:   298 VDCFRYSECVSLAER 312
               CFRY EC    ER
Sbjct:   296 TACFRYQECNVETER 310

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TAIR|locus:2025697 AT1G80850 [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 105/225 (46%), Positives = 153/225 (68%)

Query:    90 RREVTVAKNAXXXXXXXXXXXXXXDSC-CGELKRCNWITKNSDKVYVAFHDECWGVPVYD 148
             RR  +V+ ++                C C   KRC WIT  SD+ Y+AFHDE WGVPV+D
Sbjct:   102 RRSGSVSSSSSLRRNLTEERDEKASDCFCDGRKRCAWITPKSDQCYIAFHDEEWGVPVHD 161

Query:   149 DNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEIL--EISSNTAI 206
             D +LFELL+LSG L + +W +IL +++LFRE F  FDP +++++  K+I   EI++ T  
Sbjct:   162 DKRLFELLSLSGALAELSWKDILSKRQLFREVFMDFDPIAISELTNKKITSPEIAATT-- 219

Query:   207 MLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAI 266
             +L+E ++R I++NA  + KI+  FGSF  ++W +VN KP  ++FRYPR VP+++ KAE I
Sbjct:   220 LLSEQKLRSILENANQVCKIIGAFGSFDKYIWNFVNQKPTQSQFRYPRQVPVKTSKAELI 279

Query:   267 SRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAE 311
             S+DL++RGFR V P ++YSFMQ AGLT DHL  CFR+ +C++  E
Sbjct:   280 SKDLVRRGFRSVSPTVIYSFMQTAGLTNDHLTCCFRHHDCMTKDE 324

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TAIR|locus:2200447 AT1G15970 [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 100/191 (52%), Positives = 138/191 (72%)

Query:   121 KRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 180
             KRC WIT  +D  YVAFHDE WGVPV+DD +LFELL LSG L + +WT+IL R+ + RE 
Sbjct:   145 KRCAWITPKADPCYVAFHDEEWGVPVHDDKKLFELLCLSGALAELSWTDILSRRHILREV 204

Query:   181 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 240
             F  FDP +VA++ +K++    +    +L+E ++R I+DN++ + KI+ E GS   +MW +
Sbjct:   205 FMDFDPVAVAELNDKKLTAPGTAAISLLSEVKIRSILDNSRHVRKIIAECGSLKKYMWNF 264

Query:   241 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 300
             VN KP  ++FRY R VP+++ KAE IS+DL++RGFR V P ++YSFMQAAGLT DHL+ C
Sbjct:   265 VNNKPTQSQFRYQRQVPVKTSKAEFISKDLVRRGFRSVSPTVIYSFMQAAGLTNDHLIGC 324

Query:   301 FRYSECVSLAE 311
             FRY +C   AE
Sbjct:   325 FRYQDCCVDAE 335

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

TAIR|locus:2156329 AT5G44680 [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 92/190 (48%), Positives = 139/190 (73%)

Query:   121 KRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 180
             KRC++IT +SD +YVA+HD+ WGVPV+DDN LFELL L+G  +  +WT +LKR+  FREA
Sbjct:   164 KRCSFITTSSDPIYVAYHDKEWGVPVHDDNLLFELLVLTGAQVGSDWTSVLKRRNTFREA 223

Query:   181 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 240
             F GF+ + VA   EK+I  I ++  I L++  V  +VDNAK I+K+  + GSF+ ++WG+
Sbjct:   224 FSGFEAELVADFNEKKIQSIVNDYGINLSQ--VLAVVDNAKQILKVKRDLGSFNKYIWGF 281

Query:   241 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 300
             +  KP+  K+   + +P+++ K+E IS+D+++RGFR VGP +++S MQAAGLT DHL+ C
Sbjct:   282 MKHKPVTTKYTSCQKIPVKTSKSETISKDMVRRGFRFVGPTVIHSLMQAAGLTNDHLITC 341

Query:   301 FRYSECVSLA 310
              R+ EC ++A
Sbjct:   342 PRHLECTAMA 351

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2087710 AT3G12710 [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 91/193 (47%), Positives = 136/193 (70%)

Query:   121 KRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 180
             +RC+++T  SD +YVA+HDE WGVPV+DD  LFELL LSG  +  +WT  L+++  +R+A
Sbjct:   122 QRCSFLTPTSDPIYVAYHDEEWGVPVHDDKTLFELLTLSGAQVGSDWTSTLRKRHDYRKA 181

Query:   181 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 240
             F  F+ + VAK+ EKE+  IS    I ++  +VR +V+NAK IV+I   F S   ++WG+
Sbjct:   182 FMEFEAEVVAKLTEKEMNAISIEYKIEMS--KVRGVVENAKKIVEIKKAFVSLEKYLWGF 239

Query:   241 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 300
             VN KP+   ++    +P+++ K+E+IS+D+++RGFR VGP +V+SFMQAAGLT DHL+ C
Sbjct:   240 VNHKPISTNYKLGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLITC 299

Query:   301 FRYSECVSLAERP 313
              R++ C  LA  P
Sbjct:   300 CRHAPCTLLATNP 312

GO:0003824 "catalytic activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TIGR_CMR|GSU_0567 GSU_0567 "DNA-3-methyladenine glycosylase I" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 73/186 (39%), Positives = 118/186 (63%)

Query:   120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
             ++RC W    +D +YVA+HD  WGVP +DD  LFE+L L G     +W  IL+++E +R 
Sbjct:     2 IQRCEWC--GTDPLYVAYHDGEWGVPAHDDRHLFEMLILEGAQAGLSWLTILRKREAYRR 59

Query:   180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
             AF GFD ++VA   E ++  + ++  I+    ++   + NA+ ++KI  EFGS  +++W 
Sbjct:    60 AFAGFDAETVAAWSEADVARLLADPGIVRNRLKIESTIRNARGVLKIREEFGSLDAYLWR 119

Query:   240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
             +V+  P  N +R   ++P R+ +++A+S+DL +RGF  VG  I Y+FMQA G+  DH+V 
Sbjct:   120 FVDHAPRHNAWRSLTDIPARTEQSDAMSKDLKRRGFNFVGSTICYAFMQAVGMVNDHVVH 179

Query:   300 CFRYSE 305
             CFR+ E
Sbjct:   180 CFRHDE 185

GO:0006281 "DNA repair" evidence=ISS

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=ISS

TIGR_CMR|CBU_0383 CBU_0383 "DNA-3-methyladenine glycosidase I" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 70/189 (37%), Positives = 120/189 (63%)

Query:   121 KRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 180
             +RC W++  +D +Y+ +HD  WGVP+YDD  LFE L L GM    +W  ILK++  +R++
Sbjct:    19 ERCAWVS--NDPLYIHYHDLEWGVPIYDDRLLFEFLILEGMQAGLSWLTILKKRNNYRDS 76

Query:   181 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 240
             F  FD   ++K   ++I  +  N  I+  + +++  ++NAK  +++  E+ +FS ++W +
Sbjct:    77 FNNFDASIISKYNPRKIDRLLENAGIIRNKLKIQATINNAKAFLEVKKEWRNFSDYIWHF 136

Query:   241 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 300
             V+  P+ N+++  + +P RS  ++ +S+DL KRGF+ VG  I Y+FMQA G+  DH  +C
Sbjct:   137 VDGHPIQNQWKNAKQIPTRSAISDVLSKDLKKRGFKFVGSTICYAFMQAVGMVNDHTTNC 196

Query:   301 FRYSECVSL 309
             FRY E  +L
Sbjct:   197 FRYEEIKNL 205

GO:0006281 "DNA repair" evidence=ISS

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=ISS

TIGR_CMR|SO_0016 SO_0016 "DNA-3-methyladenine glycosidase I" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 71/185 (38%), Positives = 109/185 (58%)

Query:   122 RCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAF 181
             RCNW++   D +Y  +HD  WG PVYD  +LF  L L G     +W  ILK+++ + +AF
Sbjct:     5 RCNWVS--DDPLYRDYHDNVWGRPVYDPKELFAKLCLDGQQAGLSWITILKKQQNYEQAF 62

Query:   182 GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYV 241
               F+P  +A   + ++ E+ +N  I+    ++  I+ NAK  +    +   FS+F+W +V
Sbjct:    63 ADFEPAVIATFDDAKVEELMANPGIVRNRLKIHSIIRNAKGYLAYTADGEDFSAFLWSFV 122

Query:   242 NFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCF 301
               KP +N+F     +P ++P++EA+S+ L K GF  VGP I Y+FMQA G+  DHLVDC 
Sbjct:   123 GGKPRVNQFTSMSQIPAQTPESEAMSKALKKLGFNFVGPTICYAFMQAVGMVNDHLVDCV 182

Query:   302 RYSEC 306
              Y  C
Sbjct:   183 AYDAC 187

GO:0006281 "DNA repair" evidence=ISS

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.2.20	LOW CONFIDENCE prediction!
3rd Layer	3.2.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
pfam03352	179	pfam03352, Adenine_glyco, Methyladenine glycosylas	8e-95
COG2818	188	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA	2e-59
TIGR00624	179	TIGR00624, tag, DNA-3-methyladenine glycosylase I	7e-49
PRK10353	187	PRK10353, PRK10353, 3-methyl-adenine DNA glycosyla	3e-47

>gnl|CDD|190612 pfam03352, Adenine_glyco, Methyladenine glycosylase

 Score =  278 bits (713), Expect = 8e-95
 Identities = 89/181 (49%), Positives = 130/181 (71%), Gaps = 2/181 (1%)

Query: 125 WITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGF 184
           W T  SD +YVA+HDE WGVPV+DD +LFELL L G     +W  ILK++E FREAF GF
Sbjct: 1   WAT--SDPLYVAYHDEEWGVPVHDDRKLFELLCLEGFQAGLSWITILKKREAFREAFAGF 58

Query: 185 DPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFK 244
           DP+ VA   E ++  + ++  I+    ++   ++NA+ I+K+  EFGSFS+++W +V+ K
Sbjct: 59  DPEKVAAFTEADVERLLADPGIIRNRLKIEATINNARAILKLQEEFGSFSAYLWSFVDGK 118

Query: 245 PMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYS 304
           P++N+++    VP ++P ++AIS+DL KRGF+ VGP IVY+FMQA G+  DHLVDCFR++
Sbjct: 119 PIVNRWKSLAEVPAKTPLSDAISKDLKKRGFKFVGPTIVYAFMQAVGMVNDHLVDCFRHA 178

Query: 305 E 305
           E
Sbjct: 179 E 179

The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA. Length = 179

>gnl|CDD|225374 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]

 Score =  188 bits (479), Expect = 2e-59
 Identities = 77/187 (41%), Positives = 116/187 (62%), Gaps = 1/187 (0%)

Query: 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
           + RC W     D +Y+A+HD  WGVP++DD +LFELL L G     +W  +LK++E FRE
Sbjct: 1   MNRCAWA-GGLDPLYLAYHDTEWGVPLHDDQRLFELLCLEGFQAGLSWLTVLKKREAFRE 59

Query: 180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
           AF GFDP+ VA M E+++  + ++  I+    +++  ++NA+ ++++  EFGSFS F+W 
Sbjct: 60  AFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNARAVLELQKEFGSFSEFLWS 119

Query: 240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
           +V  KP  N+      VP  +  ++A+S+ L KRGF+ VGP  VY+FMQA GL  DH   
Sbjct: 120 FVGGKPSRNQVNDGSEVPASTELSDAMSKALKKRGFKFVGPTTVYAFMQATGLVNDHAEG 179

Query: 300 CFRYSEC 306
           C    E 
Sbjct: 180 CPCRREI 186

Length = 188

>gnl|CDD|129711 TIGR00624, tag, DNA-3-methyladenine glycosylase I

 Score =  160 bits (407), Expect = 7e-49
 Identities = 62/182 (34%), Positives = 104/182 (57%), Gaps = 4/182 (2%)

Query: 122 RCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAF 181
           RC W +   D +Y A+HD  WGVP+ D   LFE ++L G     +W  +L+++E +R AF
Sbjct: 2   RCGWASV--DPLYRAYHDNEWGVPLRDSVALFERMSLEGFQAGLSWITVLRKRENYRRAF 59

Query: 182 GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYV 241
            GFD   VA+M + ++  +  +  I+    ++   + NA+  +++  E      F+W +V
Sbjct: 60  SGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQL--EQNDLVEFLWSFV 117

Query: 242 NFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCF 301
           N +P   +      +P  +P+++A+S++L KRGFR VGP I Y+ MQA G+  DH+  C+
Sbjct: 118 NHQPQPRQRPTDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGMVDDHIQGCW 177

Query: 302 RY 303
            Y
Sbjct: 178 VY 179

All proteins in this family are alkylation DNA glycosylases that function in base excision repair This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 179

>gnl|CDD|182401 PRK10353, PRK10353, 3-methyl-adenine DNA glycosylase I; Provisional

 Score =  157 bits (397), Expect = 3e-47
 Identities = 65/182 (35%), Positives = 109/182 (59%), Gaps = 2/182 (1%)

Query: 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
           ++RC W+++  D +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R 
Sbjct: 1   MERCGWVSQ--DPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRA 58

Query: 180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
            F  FDP  VA M E+++  +  +  I+    +++ I+ NA+  +++      F+ F+W 
Sbjct: 59  CFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWS 118

Query: 240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
           +VN +P + +      +P  +P ++A+S+ L KRGF+ VG  I YSFMQA GL  DH+V 
Sbjct: 119 FVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVG 178

Query: 300 CF 301
           C 
Sbjct: 179 CC 180

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
PRK10353	187	3-methyl-adenine DNA glycosylase I; Provisional	100.0
TIGR00624	179	tag DNA-3-methyladenine glycosylase I. This family	100.0
PF03352	179	Adenine_glyco: Methyladenine glycosylase; InterPro	100.0
COG2818	188	Tag 3-methyladenine DNA glycosylase [DNA replicati	100.0
TIGR03252	177	uncharacterized HhH-GPD family protein. This model	95.68
cd00056	158	ENDO3c endonuclease III; includes endonuclease III	95.68
PRK13913	218	3-methyladenine DNA glycosylase; Provisional	94.98
TIGR01083	191	nth endonuclease III. This equivalog model identif	94.73
smart00478	149	ENDO3c endonuclease III. includes endonuclease III	94.4
PRK10702	211	endonuclease III; Provisional	92.9
PRK10880	350	adenine DNA glycosylase; Provisional	89.03
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	88.84
COG0177	211	Nth Predicted EndoIII-related endonuclease [DNA re	87.62
PF00730	108	HhH-GPD: HhH-GPD superfamily base excision DNA rep	84.65

>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional

Probab=100.00  E-value=3e-87  Score=599.85  Aligned_cols=183  Identities=36%  Similarity=0.781  Sum_probs=179.7

Q ss_pred             CccccCccCCCChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 021082          120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILE  199 (317)
Q Consensus       120 ~~RC~Wa~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~  199 (317)
                      +.||.|++  +||+|++|||+|||+|+|||+.|||+||||+|||||||.|||+||++||+||+||||++||+|+|++|++
T Consensus         1 m~rC~W~~--~~~l~~~YHD~eWG~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~   78 (187)
T PRK10353          1 MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVER   78 (187)
T ss_pred             CCCCCCCC--CChHHHHhhhccCCCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence            36999996  5899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccC
Q 021082          200 ISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVG  279 (317)
Q Consensus       200 L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVG  279 (317)
                      ||+|++|||||+||+|||+||+++++|++|+|||++|||+||+++||+|++.+..++|++|++|++|||+||||||+|||
T Consensus        79 Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e~gSf~~ylW~fv~~~p~~~~~~~~~~~P~~t~~S~~lskdLKkrGFkFvG  158 (187)
T PRK10353         79 LVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVG  158 (187)
T ss_pred             HhcCchhHHhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhccCCCcccCCccchhcCCCCCHHHHHHHHHHHHcCCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccccccccccch
Q 021082          280 PVIVYSFMQAAGLTIDHLVDCFRYS  304 (317)
Q Consensus       280 PttvysFMQAvG~vnDHl~~C~r~~  304 (317)
                      ||||||||||+||||||+++|+++.
T Consensus       159 pt~~ysfmqA~G~vndH~~~C~~~~  183 (187)
T PRK10353        159 TTICYSFMQACGLVNDHVVGCCCHP  183 (187)
T ss_pred             cHHHHHHHHHHCCccccccCccccC
Confidence            9999999999999999999999884

>TIGR00624 tag DNA-3-methyladenine glycosylase I

Probab=100.00  E-value=3.2e-85  Score=583.34  Aligned_cols=179  Identities=34%  Similarity=0.767  Sum_probs=175.6

Q ss_pred             ccccCccCCCChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHh
Q 021082          121 KRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEI  200 (317)
Q Consensus       121 ~RC~Wa~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L  200 (317)
                      .||.|++  +||+|++|||+|||+|+|||+.|||+||||+|||||||.|||+||++||+||+||||++||+|+|++|++|
T Consensus         1 ~rC~W~~--~~~l~~~YHD~eWG~p~~dd~~LFE~L~Le~fQAGLSW~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L   78 (179)
T TIGR00624         1 VRCGWAS--VDPLYRAYHDNEWGVPLRDSVALFERMSLEGFQAGLSWITVLRKRENYRRAFSGFDIVKVARMTDADVERL   78 (179)
T ss_pred             CCCCCcC--CChHHHHhhhccCCCcCcCCHHHHHHHHHHHHhCcCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHH
Confidence            4899996  48999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021082          201 SSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP  280 (317)
Q Consensus       201 ~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGP  280 (317)
                      |+|++|||||+||+|||+||+++++|++|  ||++|||+||+++||+|++....++|++|++|++|||+||||||+||||
T Consensus        79 ~~d~~IIRnr~KI~Avi~NA~~~l~i~~e--sf~~ylW~fv~~~Pi~~~~~~~~~~p~~t~~S~~lskdLKkrGfkFvGp  156 (179)
T TIGR00624        79 LQDDGIIRNRGKIEATIANARAALQLEQN--DLVEFLWSFVNHQPQPRQRPTDSEIPSSTPESKAMSKELKKRGFRFVGP  156 (179)
T ss_pred             hcCccchhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHhccCCCCccCCccccccCCCCCHHHHHHHHHHHHcCCeecCh
Confidence            99999999999999999999999999887  9999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhccccccccccccc
Q 021082          281 VIVYSFMQAAGLTIDHLVDCFRY  303 (317)
Q Consensus       281 ttvysFMQAvG~vnDHl~~C~r~  303 (317)
                      |||||||||+||||||+++|+++
T Consensus       157 t~~ysfmqA~G~vndH~~~C~~~  179 (179)
T TIGR00624       157 TICYALMQATGMVDDHIQGCWVY  179 (179)
T ss_pred             HHHHHHHHHHCCccccccCCcCC
Confidence            99999999999999999999975

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3

Probab=100.00  E-value=1.5e-83  Score=572.58  Aligned_cols=179  Identities=52%  Similarity=0.997  Sum_probs=154.1

Q ss_pred             CccCCCChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCC
Q 021082          125 WITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNT  204 (317)
Q Consensus       125 Wa~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~  204 (317)
                      |+.  ++|+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||+|+|++|++||+|+
T Consensus         1 W~~--~~~~~~~YHD~eWG~P~~dD~~LFe~L~Le~fQaGLsW~~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~   78 (179)
T PF03352_consen    1 WAN--SDPLYRAYHDEEWGRPVHDDRKLFEMLTLEGFQAGLSWSTILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDP   78 (179)
T ss_dssp             TTT--SSHHHHHHHHHTTTSS---HHHHHHHHHHHHHTTTS-HHHHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTST
T ss_pred             CCC--CChHHHHHhcccCCCcccCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCc
Confidence            885  489999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHH
Q 021082          205 AIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVY  284 (317)
Q Consensus       205 ~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvy  284 (317)
                      +|||||+||+|||+||+++++|++|||||++|||+||+++||+|.+....++|++|++|++|||+|||+||+||||||||
T Consensus        79 ~iIRnr~KI~Avi~NA~~~l~i~~e~gsF~~ylw~f~~~~~i~~~~~~~~~~p~~t~~s~~isk~lkk~GF~FvGpt~vy  158 (179)
T PF03352_consen   79 GIIRNRRKIRAVINNARAILKIQEEFGSFSDYLWSFVNGKPIVNHWRSPEDVPASTPLSEAISKDLKKRGFKFVGPTTVY  158 (179)
T ss_dssp             TSS--HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHCTTTS-EE---SSGGGS-S--HHHHHHHHHHHHTT--S--HHHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCcCccccccccccCcCccHHHHHHHHHHHhCcceeECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccccccccccchh
Q 021082          285 SFMQAAGLTIDHLVDCFRYSE  305 (317)
Q Consensus       285 sFMQAvG~vnDHl~~C~r~~~  305 (317)
                      |||||+||||||+++|++|.+
T Consensus       159 sflqA~G~vndH~~~C~~~~~  179 (179)
T PF03352_consen  159 SFLQAIGMVNDHLVDCFRHQE  179 (179)
T ss_dssp             HHHHHTTSEE-SSTTSTTS--
T ss_pred             HHHHHhCCccccccCccccCC
Confidence            999999999999999999864

2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.

>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]

Probab=100.00  E-value=2.8e-83  Score=572.56  Aligned_cols=186  Identities=41%  Similarity=0.819  Sum_probs=181.4

Q ss_pred             CccccCccCCCChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 021082          120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILE  199 (317)
Q Consensus       120 ~~RC~Wa~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~  199 (317)
                      +.||.|+.. .||+|.+|||+|||+|++||+.|||+||||+|||||||.|||+||++||+||++|||++||.|+|+||++
T Consensus         1 ~~rC~w~~~-~~ply~~YHD~eWG~p~~Dd~~LFE~l~Le~fQAGLSW~tVL~KRe~freaF~~Fd~~kVA~~~~~dver   79 (188)
T COG2818           1 MNRCAWAGG-LDPLYLAYHDTEWGVPLHDDQRLFELLCLEGFQAGLSWLTVLKKREAFREAFHGFDPEKVAAMTEEDVER   79 (188)
T ss_pred             CCcccccCC-CCchhhcccccccCCCCCChHHHHHHHHHHHHhccchHHHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHH
Confidence            469999974 4899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccC
Q 021082          200 ISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVG  279 (317)
Q Consensus       200 L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVG  279 (317)
                      ||+|++|||||+||+|||+|||++++|++|||||++|||+||+++|+++++.+..++|+.|++|++|||+||||||+|||
T Consensus        80 Ll~d~gIIR~r~KI~A~i~NA~~~l~l~~e~Gsf~~flWsf~~~~~~~~~~~~~~~~pa~t~~S~~mskaLKkrGf~fvG  159 (188)
T COG2818          80 LLADAGIIRNRGKIKATINNARAVLELQKEFGSFSEFLWSFVGGKPSRNQVNDGSEVPASTELSDAMSKALKKRGFKFVG  159 (188)
T ss_pred             HHhCcchhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhcCCCcccccccchhhccccchhHHHHHHHHHHccCeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccccccccccchhh
Q 021082          280 PVIVYSFMQAAGLTIDHLVDCFRYSEC  306 (317)
Q Consensus       280 PttvysFMQAvG~vnDHl~~C~r~~~~  306 (317)
                      |||||+||||+|+||||+.+|+++...
T Consensus       160 pTt~yafmqA~G~vndH~~~C~~~~~~  186 (188)
T COG2818         160 PTTVYAFMQATGLVNDHAEGCPCRREI  186 (188)
T ss_pred             cHHHHHHHHHHcchHHHHhcCCCcccc
Confidence            999999999999999999999988653

>TIGR03252 uncharacterized HhH-GPD family protein

Probab=95.68  E-value=0.23  Score=45.30  Aligned_cols=117  Identities=15%  Similarity=0.211  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCC-Ccchh-chhhHHHHHHhHHHHHHHHHh
Q 021082          152 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSN-TAIML-AECRVRCIVDNAKCIVKILNE  229 (317)
Q Consensus       152 LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d-~~IIR-nr~KI~AVi~NAr~il~i~~E  229 (317)
                      -||+|+-.+.-+--+|..|.+=-....+.+...||+.++.++.++|++++.. |++.+ .+.|=+-+.+=|+.++   ++
T Consensus        18 pFelLVa~ILSQqTtd~nv~kA~~~L~~~~g~~tp~~La~a~~eeL~~lI~~~pal~Gfy~~KAk~Lk~~a~~ii---e~   94 (177)
T TIGR03252        18 PFALLTGMLLDQQVPMERAFAGPHKIARRMGSLDAEDIAKYDPQAFVALFSERPAVHRFPGSMAKRVQALAQYVV---DT   94 (177)
T ss_pred             hHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCHHHHHcCCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHH---HH
Confidence            3899999999999999999877777754444489999999999999999975 45443 2345555555555553   45


Q ss_pred             cCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhc
Q 021082          230 FGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAG  291 (317)
Q Consensus       230 ~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAvG  291 (317)
                      ||+=-+-||...              +|    ....+-++|.+  ++-|||.|+--||.-+|
T Consensus        95 y~G~v~~L~~~~--------------~p----~t~~lre~Ll~--LpGVG~KTAnvVL~~l~  136 (177)
T TIGR03252        95 YDGDATAVWTEG--------------DP----DGKELLRRLKA--LPGFGKQKAKIFLALLG  136 (177)
T ss_pred             hCCChhhhhccc--------------CC----CcHHHHHHHHc--CCCCCHHHHHHHHHHHH
Confidence            554323344320              11    12233456665  79999999999988776

This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).

>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

Probab=95.68  E-value=0.099  Score=44.51  Aligned_cols=104  Identities=21%  Similarity=0.248  Sum_probs=80.1

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcCC
Q 021082          153 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGS  232 (317)
Q Consensus       153 FE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GS  232 (317)
                      ||.|+-.++..-.+|..+.+-...|.+.|. .+|+.|+..+++++.++...-+   .+.|.+.++.=|+.+.+   .+++
T Consensus         1 ~e~Li~~il~q~~s~~~a~~~~~~l~~~~g-pt~~~l~~~~~~~l~~~~~~~G---~~~kA~~i~~~a~~~~~---~~~~   73 (158)
T cd00056           1 FEVLVSEILSQQTTDKAVNKAYERLFERYG-PTPEALAAADEEELRELIRSLG---YRRKAKYLKELARAIVE---GFGG   73 (158)
T ss_pred             CHHHHHHHHHhcccHHHHHHHHHHHHHHhC-CCHHHHHCCCHHHHHHHHHhcC---hHHHHHHHHHHHHHHHH---HcCC
Confidence            688888888888999999999999998885 7999999999999999877766   46799999888888753   4443


Q ss_pred             HHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhc
Q 021082          233 FSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAG  291 (317)
Q Consensus       233 F~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAvG  291 (317)
                      +..      +               .     +.+-+.|.  .++-|||-|+-.+|.-+.
T Consensus        74 ~~~------~---------------~-----~~~~~~L~--~l~GIG~~tA~~~l~~~~  104 (158)
T cd00056          74 LVL------D---------------D-----PDAREELL--ALPGVGRKTANVVLLFAL  104 (158)
T ss_pred             ccC------C---------------C-----cccHHHHH--cCCCCCHHHHHHHHHHHC
Confidence            332      0               0     12344555  479999999998887553

>PRK13913 3-methyladenine DNA glycosylase; Provisional

Probab=94.98  E-value=0.35  Score=45.14  Aligned_cols=104  Identities=19%  Similarity=0.260  Sum_probs=76.6

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhc-----CCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHH
Q 021082          153 FELLALSGMLMDYNWTEILKRKELFREAFG-----GFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKIL  227 (317)
Q Consensus       153 FE~L~LE~fQAGLSW~tILkKR~~fr~AF~-----~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~  227 (317)
                      ||.|+-.+.-.--+|..|.+--+.+++++.     .-+|+.|+.+++++|++++.-.|.-|  .|.+.+.+=|+.+.   
T Consensus        31 fevLV~aILsQqT~~~~v~~a~~~L~~~~~~~~~~~~t~e~L~~a~~eeL~~~Irp~Gf~~--~KA~~Lk~la~~i~---  105 (218)
T PRK13913         31 FEALLGAVLTQNTKFEAVEKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYN--QKAKRLIDLSENIL---  105 (218)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccccCCCHHHHHcCCHHHHHHHHHhcCCHH--HHHHHHHHHHHHHH---
Confidence            888888877777889999888777777663     23899999999999999999988766  57777777777774   


Q ss_pred             HhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHH
Q 021082          228 NEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQ  288 (317)
Q Consensus       228 ~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQ  288 (317)
                      +++|+++.+.    .              |   +    .-++|.+  .+-|||-|+-++|-
T Consensus       106 ~~~g~~~~~~----~--------------~---~----~re~Ll~--l~GIG~kTAd~iLl  139 (218)
T PRK13913        106 KDFGSFENFK----Q--------------E---V----TREWLLD--QKGIGKESADAILC  139 (218)
T ss_pred             HHcCCchhcc----C--------------c---h----HHHHHHc--CCCccHHHHHHHHH
Confidence            4667765321    0              0   0    1134544  78889988888776

>TIGR01083 nth endonuclease III

Probab=94.73  E-value=0.43  Score=42.73  Aligned_cols=101  Identities=21%  Similarity=0.308  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcC
Q 021082          152 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFG  231 (317)
Q Consensus       152 LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~G  231 (317)
                      -||.|+-++.-.--+|..+.+-...+.+.|-  +|+.|+..+++++.+++.--|.-+  .|.+.+.+=|+.+.+   ++|
T Consensus        26 pf~~Li~~ILsqqt~~~~~~~~~~~l~~~~p--t~~~l~~~~~~~L~~~ir~~G~~~--~Ka~~i~~~a~~i~~---~~~   98 (191)
T TIGR01083        26 PFELLVATILSAQATDKSVNKATKKLFEVYP--TPQALAQAGLEELEEYIKSIGLYR--NKAKNIIALCRILVE---RYG   98 (191)
T ss_pred             HHHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHhcCChH--HHHHHHHHHHHHHHH---HcC
Confidence            4899999999889999999988777777664  899999999999999888777665  577778777777653   333


Q ss_pred             CHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021082          232 SFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA  290 (317)
Q Consensus       232 SF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAv  290 (317)
                      +                      ++|.       .-+.|.+  ++-|||.|+..+|.-+
T Consensus        99 ~----------------------~~~~-------~~~~L~~--l~GIG~ktA~~ill~~  126 (191)
T TIGR01083        99 G----------------------EVPE-------DREELVK--LPGVGRKTANVVLNVA  126 (191)
T ss_pred             C----------------------CCch-------HHHHHHh--CCCCcHHHHHHHHHHH
Confidence            1                      0111       1234555  7899999998887543

This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>smart00478 ENDO3c endonuclease III

Probab=94.40  E-value=0.43  Score=40.31  Aligned_cols=88  Identities=24%  Similarity=0.354  Sum_probs=65.2

Q ss_pred             ccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCc
Q 021082          165 YNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFK  244 (317)
Q Consensus       165 LSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~k  244 (317)
                      .+|..+.+--..|.+.|-  +|+.++..++++|.+++..-+  -.+.|.+.|++.|+.+.+   ++++            
T Consensus         5 ~~~~~a~~~~~~l~~~~~--~~~~l~~~~~~eL~~~l~~~g--~~~~ka~~i~~~a~~~~~---~~~~------------   65 (149)
T smart00478        5 TSDEAVNKATERLFEKFP--TPEDLAAADEEELEELIRPLG--FYRRKAKYLIELARILVE---EYGG------------   65 (149)
T ss_pred             ccHHHHHHHHHHHHHHCC--CHHHHHCCCHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHH---HHCC------------
Confidence            467888888888888887  799999999999998887645  345699999999988754   2221            


Q ss_pred             cccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021082          245 PMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA  290 (317)
Q Consensus       245 pi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAv  290 (317)
                                ++|       ...+.|.+  ++-|||.|+-.||.-+
T Consensus        66 ----------~~~-------~~~~~L~~--l~GIG~~tA~~~l~~~   92 (149)
T smart00478       66 ----------EVP-------DDREELLK--LPGVGRKTANAVLSFA   92 (149)
T ss_pred             ----------Ccc-------HHHHHHHc--CCCCcHHHHHHHHHHH
Confidence                      011       12355654  8999999998887765

includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

>PRK10702 endonuclease III; Provisional

Probab=92.90  E-value=1.1  Score=41.29  Aligned_cols=69  Identities=10%  Similarity=0.151  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHH
Q 021082          152 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV  224 (317)
Q Consensus       152 LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il  224 (317)
                      -||.|+-++.-+--+|..|.+--+.+.+.|  .+|+.++..++++|++++.--|.-+.  |-+.+++.|+.+.
T Consensus        29 p~e~lvs~iLsq~t~~~~v~~~~~~L~~~~--pt~e~l~~a~~~~l~~~i~~~G~y~~--kA~~l~~~a~~i~   97 (211)
T PRK10702         29 PFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGLYNS--KAENVIKTCRILL   97 (211)
T ss_pred             hHHHHHHHHHHhhcCHHHHHHHHHHHHHHc--CCHHHHHCCCHHHHHHHHHHcCCHHH--HHHHHHHHHHHHH
Confidence            499999999988899999988888887665  47899999999999999887777665  4556677777764

>PRK10880 adenine DNA glycosylase; Provisional

Probab=89.03  E-value=4.4  Score=40.44  Aligned_cols=68  Identities=16%  Similarity=0.175  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHH
Q 021082          152 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV  224 (317)
Q Consensus       152 LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il  224 (317)
                      =|+.|+-|++-.=-+|.+|..--+.|.+.|  -+++.+|..++++|.++..--|.-+   |.+-+..-|+.+.
T Consensus        30 py~ilVseILlQQT~v~~v~~~~~rl~~~f--Pt~~~La~a~~eel~~~~~glGyy~---RAr~L~~~A~~i~   97 (350)
T PRK10880         30 PYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYYA---RARNLHKAAQQVA   97 (350)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHC--cCHHHHHCcCHHHHHHHHHcCChHH---HHHHHHHHHHHHH
Confidence            478999999999999999999999999987  4799999999999999998888752   6667777777664

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=88.84  E-value=4  Score=39.25  Aligned_cols=68  Identities=21%  Similarity=0.257  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHH
Q 021082          152 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV  224 (317)
Q Consensus       152 LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il  224 (317)
                      .|+.|+-+++-.=-+|.+|..-.+.|.+.|-  +|+.+|..++++|.++..--|.- +  |.+.+.+=|+.+.
T Consensus        26 py~vlvseIL~QQT~v~~v~~~~~rl~~~fp--t~~~La~a~~eeL~~~~~~lG~y-~--RAr~L~~~A~~i~   93 (275)
T TIGR01084        26 PYRVWLSEVMLQQTQVATVIPYFERFLERFP--TVQALANAPQDEVLKLWEGLGYY-A--RARNLHKAAQEVV   93 (275)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhCC--CHHHHHCcCHHHHHHHHHHCCcH-H--HHHHHHHHHHHHH
Confidence            5899999999999999999999999999884  69999999999999998888875 2  4556665566553

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]

Probab=87.62  E-value=4.3  Score=38.05  Aligned_cols=102  Identities=21%  Similarity=0.273  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCC-CHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHh
Q 021082          151 QLFELLALSGMLMDYNWTEILKRKELFREAFGGF-DPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNE  229 (317)
Q Consensus       151 ~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~F-D~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E  229 (317)
                      --||+|+--+.-|--+=..+.+   +.++.|.-| +|+.++..++++|++++..-|+-|+  |-+.|+.=|+.++   ++
T Consensus        28 ~pf~lLva~iLSaqttD~~vn~---at~~Lf~~~~t~e~l~~a~~~~l~~~I~~iGlyr~--KAk~I~~~~~~l~---e~   99 (211)
T COG0177          28 DPFELLVAVILSAQTTDEVVNK---ATPALFKRYPTPEDLLNADEEELEELIKSIGLYRN--KAKNIKELARILL---EK   99 (211)
T ss_pred             CcHHHHHHHHHhccCchHHHHH---HHHHHHHHcCCHHHHHcCCHHHHHHHHHhcCCcHH--HHHHHHHHHHHHH---HH
Confidence            3478876555544444444444   444445444 4999999999999999999999887  6667777777764   56


Q ss_pred             cCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhc
Q 021082          230 FGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAG  291 (317)
Q Consensus       230 ~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAvG  291 (317)
                      ||+                      ++|..-       ++|.+  ---||+.|++=.|.-+.
T Consensus       100 ~~g----------------------~vP~~~-------~eL~~--LPGVGrKTAnvVL~~a~  130 (211)
T COG0177         100 FGG----------------------EVPDTR-------EELLS--LPGVGRKTANVVLSFAF  130 (211)
T ss_pred             cCC----------------------CCCchH-------HHHHh--CCCcchHHHHHHHHhhc
Confidence            665                      233211       12333  46799999998887643

>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4

Probab=84.65  E-value=6.5  Score=31.25  Aligned_cols=63  Identities=17%  Similarity=0.197  Sum_probs=52.8

Q ss_pred             HhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHH
Q 021082          160 GMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV  224 (317)
Q Consensus       160 ~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il  224 (317)
                      ++..-.+|..+.+-...|.+.|...+|+.|+..++++|.+++..-|+-+  .|-+.+++=|+.++
T Consensus         4 Il~qq~s~~~a~~~~~~l~~~~g~pt~~~l~~~~~~el~~~i~~~G~~~--~ka~~i~~~a~~~~   66 (108)
T PF00730_consen    4 ILSQQTSIKAARKIYRRLFERYGFPTPEALAEASEEELRELIRPLGFSR--RKAKYIIELARAIL   66 (108)
T ss_dssp             HHCTTS-HHHHHHHHHHHHHHHSCSSHHHHHCSHHHHHHHHHTTSTSHH--HHHHHHHHHHHHHH
T ss_pred             eecCcCcHHHHHHHHHHHHHHhcCCCHHHHHhCCHHHHHHHhhccCCCH--HHHHHHHHHHHHhh
Confidence            3445568899999999999999999999999999999999999866654  57888888888887

2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	317
2ofk_A	183	Crystal Structure Of 3-Methyladenine Dna Glycosylas		2e-37
1lmz_A	187	Solution Structure Of 3-Methyladenine Dna Glycosyla		6e-37
4ai5_A	188	Crystal Structure Of Y16f Of 3-Methyladenine Dna Gl		1e-35
4ai4_A	188	Crystal Structure Of E38q Mutant Of 3-Methyladenine		3e-35
4aia_A	188	The Structural Basis Of 3-Methyladenine Recognition		3e-35
2ofi_A	184	Crystal Structure Of 3-Methyladenine Dna Glycosylas		5e-35
2jg6_A	186	Crystal Structure Of A 3-Methyladenine Dna Glycosyl		1e-34

>pdb|2OFK|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 183

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 2/182 (1%)
Query: 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
           ++RC+W+++  D +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R 
Sbjct: 1   MQRCDWVSQ--DPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRA 58
Query: 180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
            F  FDP  +A M E+++  +  NT I+    +++ I+ NA+  + +     SF+ F+W 
Sbjct: 59  CFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWS 118
Query: 240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
           +V+ +P I +      +P  +P ++A+++ L KRGF+ VG  I YSFMQA GL  DH+  
Sbjct: 119 FVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQACGLVNDHITG 178
Query: 300 CF 301
           CF
Sbjct: 179 CF 180

>pdb|1LMZ|A Chain A, Solution Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 187

Iteration: 1
 Score =  150 bits (380), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 110/184 (59%), Gaps = 2/184 (1%)
Query: 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
           ++RC W+++  D +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R 
Sbjct: 1   MERCGWVSQ--DPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRA 58
Query: 180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
            F  FDP  VA M E+++  +  +  I+    +++ I+ NA+  +++      F+ F+W 
Sbjct: 59  CFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWS 118
Query: 240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
           +VN +P + +      +P  +P ++A+S+ L KRGF+ VG  I YSFMQA GL  DH+V 
Sbjct: 119 FVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVG 178
Query: 300 CFRY 303
           C  Y
Sbjct: 179 CCCY 182

>pdb|4AI5|A Chain A, Crystal Structure Of Y16f Of 3-Methyladenine Dna Glycosylase I (Tag) In Complex With 3-Methyladenine Length = 188

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 108/183 (59%), Gaps = 2/183 (1%)
Query: 118 GELKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELF 177
           G +  C + TK  D VY+ FHD  WG P+YD   LF+LLAL       +W  ILK+KE +
Sbjct: 1   GAMNECAFGTK--DPVYLNFHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAY 58
Query: 178 REAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFM 237
            EAF  F+P+ VA+M  ++I  + +   I+    ++  IV+ A+  +KI   +GSFS F+
Sbjct: 59  EEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFL 118
Query: 238 WGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHL 297
           W YVN KP   ++ +  +       A  +S+DL + GF+ +GPV V+SF++AAGL   HL
Sbjct: 119 WSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHL 178
Query: 298 VDC 300
            DC
Sbjct: 179 KDC 181

>pdb|4AI4|A Chain A, Crystal Structure Of E38q Mutant Of 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 188

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 108/183 (59%), Gaps = 2/183 (1%)
Query: 118 GELKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELF 177
           G +  C + TK  D VY+ +HD  WG P+YD   LF+LLAL       +W  ILK+KE +
Sbjct: 1   GAMNECAFGTK--DPVYLNYHDHVWGQPLYDSKALFKLLALQSQHAGLSWLTILKKKEAY 58
Query: 178 REAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFM 237
            EAF  F+P+ VA+M  ++I  + +   I+    ++  IV+ A+  +KI   +GSFS F+
Sbjct: 59  EEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFL 118
Query: 238 WGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHL 297
           W YVN KP   ++ +  +       A  +S+DL + GF+ +GPV V+SF++AAGL   HL
Sbjct: 119 WSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHL 178
Query: 298 VDC 300
            DC
Sbjct: 179 KDC 181

>pdb|4AIA|A Chain A, The Structural Basis Of 3-Methyladenine Recognition By 3-Methyladenine Dna Glycosylase I (Tag) From Staphylococcus Aureus Length = 188

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 108/183 (59%), Gaps = 2/183 (1%)
Query: 118 GELKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELF 177
           G +  C + TK  D VY+ +HD  WG P+YD   LF+LLAL       +W  ILK+KE +
Sbjct: 1   GAMNECAFGTK--DPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAY 58
Query: 178 REAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFM 237
            EAF  F+P+ VA+M  ++I  + +   I+    ++  IV+ A+  +KI   +GSFS F+
Sbjct: 59  EEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFL 118
Query: 238 WGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHL 297
           W YVN KP   ++ +  +       A  +S+DL + GF+ +GPV V+SF++AAGL   HL
Sbjct: 119 WSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHL 178
Query: 298 VDC 300
            DC
Sbjct: 179 KDC 181

>pdb|2OFI|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Bound To Dna3MA Length = 184

Iteration: 1
 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 106/181 (58%), Gaps = 2/181 (1%)
Query: 121 KRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 180
           +RC+W+++  D +Y+A+HD  WGVP  D  +LFE + L G     +W  +LK++E +R  
Sbjct: 2   QRCDWVSQ--DPLYIAYHDNEWGVPETDSRKLFEXICLEGQQAGLSWITVLKKRENYRAC 59
Query: 181 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 240
           F  FDP  +A   E+++  +  NT I+    +++ I+ NA+  +       SF+ F+W +
Sbjct: 60  FHQFDPIRIAAXQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAXEQNGESFADFVWSF 119
Query: 241 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 300
           V+ +P I +      +P  +P ++A+++ L KRGF+ VG  I YSF QA GL  DH+  C
Sbjct: 120 VDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFXQACGLVNDHITGC 179
Query: 301 F 301
           F
Sbjct: 180 F 180

>pdb|2JG6|A Chain A, Crystal Structure Of A 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 186

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 2/181 (1%)
Query: 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
           +  C + TK  D VY+ +HD  WG P+YD   LF+LLAL       +W  ILK+KE + E
Sbjct: 1   MNECAFGTK--DPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEE 58
Query: 180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
           AF  F+P+ VA+M  ++I  + +   I+    ++  IV+ A+  +KI   +GSFS F+W 
Sbjct: 59  AFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWS 118
Query: 240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
           YVN KP   ++ +  +       A  +S+DL + GF+ +GPV V+SF++AAGL   HL D
Sbjct: 119 YVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKD 178
Query: 300 C 300
           C
Sbjct: 179 C 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
2jg6_A	186	DNA-3-methyladenine glycosidase; 3-methyladenine-D	3e-99
2ofk_A	183	3-methyladenine DNA glycosylase I, constitutive; D	3e-98

>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Length = 186

 Score =  289 bits (741), Expect = 3e-99
 Identities = 70/187 (37%), Positives = 107/187 (57%), Gaps = 2/187 (1%)

Query: 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
           +  C + T   D VY+ +HD  WG P+YD   LF+LLAL       +W  ILK+KE + E
Sbjct: 1   MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEE 58

Query: 180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
           AF  F+P+ VA+M  ++I  + +   I+    ++  IV+ A+  +KI   +GSFS F+W 
Sbjct: 59  AFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWS 118

Query: 240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
           YVN KP   ++ +  +       A  +S+DL + GF+ +GPV V+SF++AAGL   HL D
Sbjct: 119 YVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKD 178

Query: 300 CFRYSEC 306
           C    + 
Sbjct: 179 CPSKPKH 185

>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Length = 183

 Score =  286 bits (734), Expect = 3e-98
 Identities = 66/184 (35%), Positives = 111/184 (60%), Gaps = 2/184 (1%)

Query: 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
           ++RC+W++   D +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R 
Sbjct: 1   MQRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRA 58

Query: 180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
            F  FDP  +A M E+++  +  NT I+    +++ I+ NA+  + +     SF+ F+W 
Sbjct: 59  CFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWS 118

Query: 240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
           +V+ +P I +      +P  +P ++A+++ L KRGF+ VG  I YSFMQA GL  DH+  
Sbjct: 119 FVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQACGLVNDHITG 178

Query: 300 CFRY 303
           CF +
Sbjct: 179 CFCH 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
2jg6_A	186	DNA-3-methyladenine glycosidase; 3-methyladenine-D	100.0
2ofk_A	183	3-methyladenine DNA glycosylase I, constitutive; D	100.0
3n0u_A	219	Probable N-glycosylase/DNA lyase; structural genom	97.45
1kea_A	221	Possible G-T mismatches repair enzyme; DNA repair,	96.24
1orn_A	226	Endonuclease III; DNA repair, DNA glycosylase, [4F	96.23
3n5n_X	287	A/G-specific adenine DNA glycosylase; alpha-helice	95.8
2abk_A	211	Endonuclease III; DNA-repair, DNA glycosylase; 1.8	95.72
2h56_A	233	DNA-3-methyladenine glycosidase; 10174367, EC 3.2.	95.68
1kg2_A	225	A/G-specific adenine glycosylase; DNA repair, hydr	95.42
2yg9_A	225	DNA-3-methyladenine glycosidase II, putative; hydr	95.33
1pu6_A	218	3-methyladenine DNA glycosylase; helix-hairpin-hel	95.08
3fhg_A	207	Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel	94.89
3s6i_A	228	DNA-3-methyladenine glycosylase 1; DNA glycosylase	94.14
4b21_A	232	Probable DNA-3-methyladenine glycosylase 2; hydrol	93.87
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	93.58
3fhf_A	214	Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel	92.45
2jhn_A	295	ALKA, 3-methyladenine DNA-glycosylase; DNA repair,	91.42
3i0w_A	290	8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-	89.03
4e9f_A	161	Methyl-CPG-binding domain protein 4; HHH DNA glyco	88.56

>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A

Probab=100.00  E-value=4.7e-91  Score=622.46  Aligned_cols=184  Identities=38%  Similarity=0.698  Sum_probs=180.2

Q ss_pred             CccccCccCCCChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 021082          120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILE  199 (317)
Q Consensus       120 ~~RC~Wa~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~  199 (317)
                      |+||.|++  +||+|++|||+|||+|+|||+.|||+||||||||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus         1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~   78 (186)
T 2jg6_A            1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR   78 (186)
T ss_dssp             CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence            57999996  5899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccC
Q 021082          200 ISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVG  279 (317)
Q Consensus       200 L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVG  279 (317)
                      ||+|++|||||+||+|||+|||++++|++|+|||++|||+||+++||+|++.+..++|++||+|++|||+||||||+|||
T Consensus        79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvG  158 (186)
T 2jg6_A           79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLG  158 (186)
T ss_dssp             HTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCC
T ss_pred             HhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccccccccccchh
Q 021082          280 PVIVYSFMQAAGLTIDHLVDCFRYSE  305 (317)
Q Consensus       280 PttvysFMQAvG~vnDHl~~C~r~~~  305 (317)
                      ||||||||||+||||||+++|+++.+
T Consensus       159 pt~~YafmQA~G~vndH~~~C~~~~~  184 (186)
T 2jg6_A          159 PVTVFSFLEAAGLYDAHLKDCPSKPK  184 (186)
T ss_dssp             HHHHHHHHHHTTSEECCCTTCTTCCC
T ss_pred             hHHHHHHHHHhcccCccccCccccCC
Confidence            99999999999999999999998743

>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*

Probab=100.00  E-value=5.7e-90  Score=614.33  Aligned_cols=182  Identities=36%  Similarity=0.784  Sum_probs=178.7

Q ss_pred             CccccCccCCCChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 021082          120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILE  199 (317)
Q Consensus       120 ~~RC~Wa~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~  199 (317)
                      |+||.|++  +||+|++|||+|||+|+|||+.|||+||||||||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus         1 ~~RC~W~~--~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~   78 (183)
T 2ofk_A            1 MQRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVER   78 (183)
T ss_dssp             -CCCTTCC--SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHH
Confidence            46999996  5899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccC
Q 021082          200 ISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVG  279 (317)
Q Consensus       200 L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVG  279 (317)
                      ||+|++|||||+||+|||+||+++++|++|+|||++|||+||+++||+|++.+..++|++||+|++|||+||||||+|||
T Consensus        79 Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvG  158 (183)
T 2ofk_A           79 LLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVG  158 (183)
T ss_dssp             HTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCC
T ss_pred             HhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccccccccccc
Q 021082          280 PVIVYSFMQAAGLTIDHLVDCFRY  303 (317)
Q Consensus       280 PttvysFMQAvG~vnDHl~~C~r~  303 (317)
                      ||||||||||+||||||+++|+++
T Consensus       159 pT~~yafmQA~G~VndH~~~C~~~  182 (183)
T 2ofk_A          159 TTICYSFMQACGLVNDHITGCFCH  182 (183)
T ss_dssp             HHHHHHHHHHTTSEECCCTTSTTC
T ss_pred             hHHHHHHHHHcCcccCcccCCCCC
Confidence            999999999999999999999986

>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}

Probab=97.45  E-value=0.00025  Score=64.14  Aligned_cols=106  Identities=15%  Similarity=0.209  Sum_probs=82.2

Q ss_pred             ChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchh-chhhHHHHHHhHHHHHHH
Q 021082          148 DDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIML-AECRVRCIVDNAKCIVKI  226 (317)
Q Consensus       148 DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIR-nr~KI~AVi~NAr~il~i  226 (317)
                      .+.-.||.|+..++.+.-+|..+.+-.+.+        |+.++.+++++|++++...| +| .+.|.+.++++|+.+   
T Consensus        46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G-~Rf~~~KA~~I~~~a~~i---  113 (219)
T 3n0u_A           46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVG-HRYPQKRAEFIVENRKLL---  113 (219)
T ss_dssp             CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTT-CSSHHHHHHHHHHHGGGT---
T ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH---
Confidence            567799999999999999999988755555        78999999999999999888 46 778999999999876   


Q ss_pred             HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021082          227 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL  292 (317)
Q Consensus       227 ~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAvG~  292 (317)
                          |+|.+..    ++ +                 ....-++|.+ .++-|||.|+..||.-.|.
T Consensus       114 ----g~l~~~~----~~-~-----------------~~~~r~~L~~-~l~GVG~kTA~~vL~~~g~  152 (219)
T 3n0u_A          114 ----GKLKNLV----KG-D-----------------PFQSREFLVR-NAKGIGWKEASHFLRNTGV  152 (219)
T ss_dssp             ----TTHHHHH----HS-C-----------------HHHHHHHHHH-HSTTCCHHHHHHHHHTTTC
T ss_pred             ----HHHHHHh----cC-C-----------------cHHHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence                4554443    11 1                 1123344552 3899999999999987776

>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2

Probab=96.24  E-value=0.03  Score=49.98  Aligned_cols=101  Identities=17%  Similarity=0.194  Sum_probs=79.7

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcC
Q 021082          152 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFG  231 (317)
Q Consensus       152 LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~G  231 (317)
                      .||.|+-+++-.-.+|..+.+-...|.+.|  .+|+.|+..++++|++++..-|.-  +.|.+.++.=|+.+.+   ++|
T Consensus        35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~~--~~KA~~l~~~a~~i~~---~~~  107 (221)
T 1kea_A           35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGLS--NQRAEQLKELARVVIN---DYG  107 (221)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSCH--HHHHHHHHHHHHHHHH---HHT
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHH---HhC
Confidence            799999999999999999999999998887  579999999999999999888876  4577888888887754   322


Q ss_pred             CHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021082          232 SFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA  290 (317)
Q Consensus       232 SF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAv  290 (317)
                      +                      ++|.       .-++|.  .++-|||.|+..+|.-+
T Consensus       108 g----------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~~  135 (221)
T 1kea_A          108 G----------------------RVPR-------NRKAIL--DLPGVGKYTCAAVMCLA  135 (221)
T ss_dssp             T----------------------SCCS-------CHHHHH--TSTTCCHHHHHHHHHHT
T ss_pred             C----------------------CchH-------HHHHHH--hCCCCcHHHHHHHHHHh
Confidence            1                      1231       112454  38899999999888654

>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*

Probab=96.23  E-value=0.055  Score=48.52  Aligned_cols=69  Identities=14%  Similarity=0.121  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHH
Q 021082          152 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV  224 (317)
Q Consensus       152 LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il  224 (317)
                      .||.|+-+++-.-.+|..+.+-...|.++|-  +|+.++..++++|++++..-|.-+  .|.+.++.=|+.+.
T Consensus        33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fp--t~~~la~a~~~~l~~~i~~~G~~~--~KA~~l~~~a~~i~  101 (226)
T 1orn_A           33 PFELLIAVVLSAQCTDALVNKVTKRLFEKYR--TPHDYIAVPLEELEQDIRSIGLYR--NKARNIQKLCAMLI  101 (226)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCC--SHHHHHSSCHHHHHHHTGGGSSHH--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCChH--HHHHHHHHHHHHHH
Confidence            5999999999999999999999999988874  899999999999999998888765  57777887787775

>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}

Probab=95.80  E-value=0.14  Score=48.11  Aligned_cols=103  Identities=15%  Similarity=0.204  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHH
Q 021082          149 DNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILN  228 (317)
Q Consensus       149 Dr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~  228 (317)
                      .+-.||.|+-+++-.-.+|..|.+-...|.+.|-  +|+.+|..++++|++++.--|.-+   |.+.+..=|+.+.+   
T Consensus        46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~~---KA~~L~~~A~~i~~---  117 (287)
T 3n5n_X           46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYYS---RGRRLQEGARKVVE---  117 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCHH---HHHHHHHHHHHHHH---
T ss_pred             CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCHH---HHHHHHHHHHHHHH---
Confidence            4678999999999999999999999999988875  899999999999999999888863   78888888887753   


Q ss_pred             hcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHH
Q 021082          229 EFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQA  289 (317)
Q Consensus       229 E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQA  289 (317)
                      ++|+                      ++|..       .++|.+. ++-|||.|+..+|.-
T Consensus       118 ~~~g----------------------~~p~~-------~~~Ll~~-LpGIG~kTA~~iL~~  148 (287)
T 3n5n_X          118 ELGG----------------------HMPRT-------AETLQQL-LPGVGRYTAGAIASI  148 (287)
T ss_dssp             HSTT----------------------CCCSS-------HHHHHHH-STTCCHHHHHHHHHH
T ss_pred             HhCC----------------------CCcHH-------HHHHHHH-cCCCCHHHHHHHHHH
Confidence            4432                      12221       1234331 578999999888754

>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1

Probab=95.72  E-value=0.045  Score=48.28  Aligned_cols=71  Identities=11%  Similarity=0.171  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHH
Q 021082          151 QLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVK  225 (317)
Q Consensus       151 ~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~  225 (317)
                      -.||.|+-+++-.-.+|..|.+-.+.+.+.|  .+|+.++..++++|++++..-|.-  +.|.+.++.=|+.+.+
T Consensus        28 ~pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~~--~~KA~~l~~~a~~~~~   98 (211)
T 2abk_A           28 SPFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGLY--NSKAENIIKTCRILLE   98 (211)
T ss_dssp             SHHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTTH--HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHH
Confidence            4799999999999999999988777665544  469999999999999999888874  5678888888887753

>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}

Probab=95.68  E-value=0.11  Score=46.86  Aligned_cols=130  Identities=13%  Similarity=0.159  Sum_probs=91.9

Q ss_pred             CChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCC--CHHHHhcCCHHHHHHhhCCCcch
Q 021082          130 SDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGF--DPKSVAKMGEKEILEISSNTAIM  207 (317)
Q Consensus       130 ~dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~F--D~~~VA~~~eedie~L~~d~~II  207 (317)
                      .||.+....+..-|.+.....-.||.|+-.+.-.-.+|..+.+-...+.+.|..+  +|+.|+..++++|..    -|  
T Consensus        29 ~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~----~G--  102 (233)
T 2h56_A           29 QDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQ----AG--  102 (233)
T ss_dssp             TCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHH----TT--
T ss_pred             cCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHHHH----cC--
Confidence            3677765555444544434445799999999999999999999999999999777  999999999998822    23  


Q ss_pred             hchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHH
Q 021082          208 LAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFM  287 (317)
Q Consensus       208 Rnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFM  287 (317)
                      -.++|.+.|+.=|+.+.+   .+.++....                 .+|     .+..-++|.  .++-|||-|+-.+|
T Consensus       103 ~~~~KA~~I~~~A~~i~~---~~~~~~~l~-----------------~~p-----~~~~~~~L~--~lpGIG~kTA~~il  155 (233)
T 2h56_A          103 VSKRKIEYIRHVCEHVES---GRLDFTELE-----------------GAE-----ATTVIEKLT--AIKGIGQWTAEMFM  155 (233)
T ss_dssp             CCHHHHHHHHHHHHHHHT---TSSCHHHHT-----------------TSC-----HHHHHHHHH--TSTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHh---CCCCHHHHh-----------------cCC-----HHHHHHHHH--hCCCcCHHHHHHHH
Confidence            356788999988888753   222333211                 111     123445665  48999999999987


Q ss_pred             HH-hcc
Q 021082          288 QA-AGL  292 (317)
Q Consensus       288 QA-vG~  292 (317)
                      .- .|.
T Consensus       156 l~alg~  161 (233)
T 2h56_A          156 MFSLGR  161 (233)
T ss_dssp             HHTTCC
T ss_pred             HHhCCC
Confidence            75 454

>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A

Probab=95.42  E-value=0.12  Score=46.13  Aligned_cols=101  Identities=15%  Similarity=0.175  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhc
Q 021082          151 QLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEF  230 (317)
Q Consensus       151 ~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~  230 (317)
                      -.||.|+-+++-.-.+|..+.+-...|.+.|  .+|+.++..++++|++++.--|.-  + |.+.++.=|+.+.+   ++
T Consensus        29 ~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~--~-kA~~l~~~a~~i~~---~~  100 (225)
T 1kg2_A           29 TPYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY--A-RARNLHKAAQQVAT---LH  100 (225)
T ss_dssp             CHHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT--H-HHHHHHHHHHHHHH---HS
T ss_pred             CHHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH--H-HHHHHHHHHHHHHH---Hh
Confidence            3699999999999999999998777777666  379999999999999999888886  2 78888888887753   32


Q ss_pred             CCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021082          231 GSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA  290 (317)
Q Consensus       231 GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAv  290 (317)
                      |+                      ++|.       .-++|.  .++-|||.|+..+|.-+
T Consensus       101 ~g----------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~a  129 (225)
T 1kg2_A          101 GG----------------------KFPE-------TFEEVA--ALPGVGRSTAGAILSLS  129 (225)
T ss_dssp             TT----------------------SCCC-------SHHHHH--TSTTCCHHHHHHHHHHH
T ss_pred             CC----------------------CchH-------HHHHHh--cCCCCcHHHHHHHHHHh
Confidence            21                      1221       123454  48899999998887643

>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A

Probab=95.33  E-value=0.11  Score=46.67  Aligned_cols=128  Identities=17%  Similarity=0.155  Sum_probs=91.6

Q ss_pred             CChhHhhhhhhCCCc-cccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchh
Q 021082          130 SDKVYVAFHDECWGV-PVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIML  208 (317)
Q Consensus       130 ~dply~~YHD~EWG~-Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIR  208 (317)
                      .||.+..-.+..-|. +.....-.||.|+-.+.-.-.||..+.+-...+.+.|...+|+.|+..+++++..    -+  -
T Consensus        38 ~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~Lr~----~G--~  111 (225)
T 2yg9_A           38 RDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRG----VG--L  111 (225)
T ss_dssp             TSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHHHH----TT--C
T ss_pred             cCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHHHH----CC--C
Confidence            478877666655554 3444445799999999999999999999999998888878999999999998732    22  2


Q ss_pred             chhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHH
Q 021082          209 AECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQ  288 (317)
Q Consensus       209 nr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQ  288 (317)
                      .+.|.+.|+.=|+.+.+   ...+++.                 ...+|     .+.+-++|.  .++-|||-|+..+|.
T Consensus       112 ~~~KA~~i~~lA~~~~~---g~~~l~~-----------------l~~~~-----~~e~~~~L~--~l~GIG~~TA~~ill  164 (225)
T 2yg9_A          112 SWAKVRTVQAAAAAAVS---GQIDFAH-----------------LSGQP-----DELVIAELV--QLPGIGRWTAEMFLL  164 (225)
T ss_dssp             CHHHHHHHHHHHHHHHT---TSSCGGG-----------------CTTSC-----HHHHHHHHH--TSTTCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHh---CCcCHHH-----------------HhcCC-----HHHHHHHHH--cCCCCCHHHHHHHHH
Confidence            35789999988888754   1112221                 11112     234555666  489999999998887


Q ss_pred             Hh
Q 021082          289 AA  290 (317)
Q Consensus       289 Av  290 (317)
                      -+
T Consensus       165 ~~  166 (225)
T 2yg9_A          165 FA  166 (225)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*

Probab=95.08  E-value=0.15  Score=45.39  Aligned_cols=107  Identities=20%  Similarity=0.212  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHH-hcCCC----HHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHH
Q 021082          152 LFELLALSGMLMDYNWTEILKRKELFREA-FGGFD----PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKI  226 (317)
Q Consensus       152 LFE~L~LE~fQAGLSW~tILkKR~~fr~A-F~~FD----~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i  226 (317)
                      -||.|+-.+.-.-.+|..+.+-...+.++ |-..+    |+.++..+++++++++..-|.-+  .|.+.+..=|+.+.  
T Consensus        30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~--~KA~~L~~~a~~i~--  105 (218)
T 1pu6_A           30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYN--QKAKRLIDLSGNIL--  105 (218)
T ss_dssp             SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHH--HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCcH--HHHHHHHHHHHHHH--
Confidence            58999999999999999999888888776 54322    99999999999999998888654  57778887777764  


Q ss_pred             HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021082          227 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA  290 (317)
Q Consensus       227 ~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAv  290 (317)
                       +++|+|...-                  +|       ..-++|.  .++-|||.|+..+|.-+
T Consensus       106 -~~~~~l~~~~------------------~~-------~~~~~L~--~lpGIG~kTA~~il~~a  141 (218)
T 1pu6_A          106 -KDFQSFENFK------------------QE-------VTREWLL--DQKGIGKESADAILCYA  141 (218)
T ss_dssp             -HHHSSHHHHH------------------HH-------CCHHHHH--TSTTCCHHHHHHHHHHT
T ss_pred             -HhcCChhhcc------------------ch-------HHHHHHH--cCCCcCHHHHHHHHHHH
Confidence             4567765320                  01       1122454  48889999998888754

>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}

Probab=94.89  E-value=0.092  Score=46.38  Aligned_cols=112  Identities=12%  Similarity=0.155  Sum_probs=81.5

Q ss_pred             cChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHH
Q 021082          147 YDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKI  226 (317)
Q Consensus       147 ~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i  226 (317)
                      ...+-.||.|+-++.-.-.+|..+.+-.+.+        ++.++..++++|++++..-++=-.+.|.+.+..-|+++.+.
T Consensus        28 ~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~   99 (207)
T 3fhg_A           28 SNEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGR   99 (207)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTT
T ss_pred             CCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999888777        58899999999999877555423567888888888866421


Q ss_pred             HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021082          227 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL  292 (317)
Q Consensus       227 ~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAvG~  292 (317)
                        -.|++..|- +    .+               |  +..-++|.  .++-|||.|+-.+|..+|.
T Consensus       100 --~~~~l~~~~-~----~~---------------~--~~~~~~L~--~lpGIG~kTA~~il~~~~~  139 (207)
T 3fhg_A          100 --LKEEIKPLA-D----ED---------------Q--QLARERLL--NIKGIGMQEASHFLRNVGY  139 (207)
T ss_dssp             --HHHHHHHHH-H----HC---------------H--HHHHHHHT--TSTTCCHHHHHHHHHHTTC
T ss_pred             --hhhhHHHHh-C----CC---------------H--HHHHHHHH--cCCCcCHHHHHHHHHHhCC
Confidence              112333321 0    00               1  13445565  6999999999999987676

>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}

Probab=94.14  E-value=0.31  Score=43.83  Aligned_cols=128  Identities=11%  Similarity=0.093  Sum_probs=91.2

Q ss_pred             CChhHhhhhhhCCCccccC--hH-HHHHHHHHHHhhccccHHHHHHhHHHHHHHh---cCC-CHHHHhcCCHHHHHHhhC
Q 021082          130 SDKVYVAFHDECWGVPVYD--DN-QLFELLALSGMLMDYNWTEILKRKELFREAF---GGF-DPKSVAKMGEKEILEISS  202 (317)
Q Consensus       130 ~dply~~YHD~EWG~Pv~D--Dr-~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF---~~F-D~~~VA~~~eedie~L~~  202 (317)
                      .||.+..-.+..-|..+.-  .+ -.||.|+-.+.-.-.||..+.+-...| +.|   ..| +|+.|+..++++|..   
T Consensus        25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~Lr~---  100 (228)
T 3s6i_A           25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIMRA---  100 (228)
T ss_dssp             SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHHHH---
T ss_pred             hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHHHH---
Confidence            4888877776655654432  22 579999999999999999999999999 888   335 999999999998732   


Q ss_pred             CCcchhchhhHHHHHHhHHHHHHHHHhcCCHH--HhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021082          203 NTAIMLAECRVRCIVDNAKCIVKILNEFGSFS--SFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP  280 (317)
Q Consensus       203 d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~--~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGP  280 (317)
                         +=-.++|.+.|+.=|+++.+     |.+.  +.+-.                ++     .+.+-+.|.  .++-|||
T Consensus       101 ---~G~~~rKa~~i~~~A~~~~~-----g~~p~~~~l~~----------------~~-----~~e~~~~L~--~l~GIG~  149 (228)
T 3s6i_A          101 ---CGFSARKIDSLKSIAEATIS-----GLIPTKEEAER----------------LS-----NEELIERLT--QIKGIGR  149 (228)
T ss_dssp             ---HTCCHHHHHHHHHHHHHHHH-----TSSCCHHHHTT----------------SC-----HHHHHHHHT--TSTTCCH
T ss_pred             ---cCCCHHHHHHHHHHHHHHHc-----CCCCChHHHhc----------------CC-----HHHHHHHHH--hCCCcCH
Confidence               33356789999988888752     3321  11211                11     234556665  4999999


Q ss_pred             hhHHHHHH-Hhcc
Q 021082          281 VIVYSFMQ-AAGL  292 (317)
Q Consensus       281 ttvysFMQ-AvG~  292 (317)
                      -|+..+|. +.|.
T Consensus       150 ~TA~~ill~~lg~  162 (228)
T 3s6i_A          150 WTVEMLLIFSLNR  162 (228)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHHhCCC
Confidence            99988875 5564

>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*

Probab=93.87  E-value=0.41  Score=43.23  Aligned_cols=130  Identities=12%  Similarity=0.077  Sum_probs=90.3

Q ss_pred             ChhHhhhhhhCCCcc--ccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC---C-CHHHHhcCCHHHHHHhhCCC
Q 021082          131 DKVYVAFHDECWGVP--VYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG---F-DPKSVAKMGEKEILEISSNT  204 (317)
Q Consensus       131 dply~~YHD~EWG~P--v~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~---F-D~~~VA~~~eedie~L~~d~  204 (317)
                      ||.+..-.+..-|..  ....+-.||.|+-.+.-.-.||..+.+-...|.++|..   | +|+.|+..++++|..    -
T Consensus        37 Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~----~  112 (232)
T 4b21_A           37 DNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHE----C  112 (232)
T ss_dssp             CHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHHT----T
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHHH----c
Confidence            777766665555532  22233479999999999999999999999999999975   5 999999999998743    3


Q ss_pred             cchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHH
Q 021082          205 AIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVY  284 (317)
Q Consensus       205 ~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvy  284 (317)
                      ++  .++|.+.|..=|+++.+  .+.+++.. +...                |     .+.+-++|.+  ++-|||-|+-
T Consensus       113 Gl--~~~Ka~~l~~~A~~~~~--g~~p~l~~-l~~~----------------~-----~~~~~~~L~~--l~GIG~~TA~  164 (232)
T 4b21_A          113 GF--SKLKSQEIHIVAEAALN--KQIPSKSE-IEKM----------------S-----EEELMESLSK--IKGVKRWTIE  164 (232)
T ss_dssp             TC--CHHHHHHHHHHHHHHHT--TCSCCHHH-HHHS----------------C-----HHHHHHHHTT--STTCCHHHHH
T ss_pred             CC--cHHHHHHHHHHHHHHHh--CCCCCHHH-HHcC----------------C-----HHHHHHHHHh--CCCcCHHHHH
Confidence            55  46789999888888753  01112222 1111                1     1244556654  8999999998


Q ss_pred             HHHHH-hcc
Q 021082          285 SFMQA-AGL  292 (317)
Q Consensus       285 sFMQA-vG~  292 (317)
                      .+|.. .|.
T Consensus       165 ~ill~alg~  173 (232)
T 4b21_A          165 MYSIFTLGR  173 (232)
T ss_dssp             HHHHHTSCC
T ss_pred             HHHHHhCCC
Confidence            87764 453

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=93.58  E-value=0.56  Score=44.43  Aligned_cols=103  Identities=21%  Similarity=0.302  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHH
Q 021082          149 DNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILN  228 (317)
Q Consensus       149 Dr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~  228 (317)
                      .+--||.|+-+++-.-.+|.+|..-...|.+.|  .+|+.+|..++++|++++.--|.-  + |.+.++.=|+.+.+   
T Consensus        36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~--~-ra~~l~~~a~~~~~---  107 (369)
T 3fsp_A           36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYY--S-RVRNLHAAVKEVKT---  107 (369)
T ss_dssp             CCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCT--H-HHHHHHHHHHHHHH---
T ss_pred             CCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChH--H-HHHHHHHHHHHHHH---
Confidence            344689999999999999999999888888877  589999999999999999888885  3 78888888888754   


Q ss_pred             hcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021082          229 EFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA  290 (317)
Q Consensus       229 E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAv  290 (317)
                      ++|+                      ++|.       .-++|.+  ++-|||.|+-.+|.-+
T Consensus       108 ~~~g----------------------~~p~-------~~~~L~~--l~GIG~~tA~~il~~~  138 (369)
T 3fsp_A          108 RYGG----------------------KVPD-------DPDEFSR--LKGVGPYTVGAVLSLA  138 (369)
T ss_dssp             HHTT----------------------CCCC-------SHHHHHT--STTCCHHHHHHHHHHH
T ss_pred             HcCC----------------------CChh-------HHHHHhc--CCCcCHHHHHHHHHHH
Confidence            3331                      1121       1234543  8889999888877654

>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*

Probab=92.45  E-value=0.55  Score=42.20  Aligned_cols=107  Identities=12%  Similarity=0.177  Sum_probs=72.5

Q ss_pred             cChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCc--chhchhhHHHHHHhHHHHH
Q 021082          147 YDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTA--IMLAECRVRCIVDNAKCIV  224 (317)
Q Consensus       147 ~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~--IIRnr~KI~AVi~NAr~il  224 (317)
                      .+.+-.||.|+..+.-+--+|..+.+--+.+.        +.++.+++++|++++..-|  .-+  .|-+-+++-|+ + 
T Consensus        39 ~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~--------~~l~~~~~eeL~~~Ir~~G~rf~~--~KA~~I~~~a~-~-  106 (214)
T 3fhf_A           39 KSNEEWFKELCFCILTANFTAEGGIRIQKEIG--------DGFLTLPREELEEKLKNLGHRFYR--KRAEYIVLARR-F-  106 (214)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT--------THHHHSCHHHHHHHHHHTTCTTHH--HHHHHHHHHGG-G-
T ss_pred             CCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHHHCCCHHHHHHHHHHHhhHHHH--HHHHHHHHHHH-h-
Confidence            35678999999999999999999998777773        5689999999999988767  444  45444544444 2 


Q ss_pred             HHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021082          225 KILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL  292 (317)
Q Consensus       225 ~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAvG~  292 (317)
                            |..-+.+-++             .++    |   ..-++|.+ .++-|||.|+..+|.-+|.
T Consensus       107 ------~~l~~~~~~~-------------~~~----~---~~re~Ll~-~LpGVG~KTA~~vL~~~g~  147 (214)
T 3fhf_A          107 ------KNIKDIVESF-------------ENE----K---VAREFLVR-NIKGIGYKEASHFLRNVGY  147 (214)
T ss_dssp             ------CCHHHHHHHS-------------SSH----H---HHHHHHHH-HSTTCCHHHHHHHHHHTTC
T ss_pred             ------hHHHHHhccc-------------CCc----H---HHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence                  2222222111             011    1   22334441 3889999999999987776

>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A

Probab=91.42  E-value=0.88  Score=42.08  Aligned_cols=123  Identities=18%  Similarity=0.230  Sum_probs=86.1

Q ss_pred             ChhHhhhhhhCCCccccC--hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHH
Q 021082          131 DKVYVAFHDECWGVPVYD--DNQLFELLALSGMLMDYNWTEILKRKELFREAFGG-----------F-DPKSVAKMGEKE  196 (317)
Q Consensus       131 dply~~YHD~EWG~Pv~D--Dr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~-----------F-D~~~VA~~~eed  196 (317)
                      ||.+..-.+..-|.++.-  ..-.||.|+-.+.-.-.||..+.+-...+.+.|..           | +|+.|+..++++
T Consensus        95 D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~  174 (295)
T 2jhn_A           95 DEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEG  174 (295)
T ss_dssp             SHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHH
Confidence            677766666555655543  45589999999999999999999999999999864           4 799999998888


Q ss_pred             HHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCc
Q 021082          197 ILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFR  276 (317)
Q Consensus       197 ie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFk  276 (317)
                      +..    -+  -.++|.+.|+.=|++        |+|...                 ..+|    . +.+-+.|.  .++
T Consensus       175 Lr~----~G--~~~rKa~~i~~~A~~--------g~l~~l-----------------~~~~----~-~e~~~~L~--~lp  216 (295)
T 2jhn_A          175 LRE----CG--LSRRKAELIVEIAKE--------ENLEEL-----------------KEWG----E-EEAYEYLT--SFK  216 (295)
T ss_dssp             HHH----TT--CCHHHHHHHHHHHTC--------SSGGGG-----------------GGSC----H-HHHHHHHH--TST
T ss_pred             HHH----cC--CCHHHHHHHHHHHHC--------CCHhhh-----------------hcCC----H-HHHHHHHh--cCC
Confidence            732    12  245676666666554        444321                 0111    1 34555666  489


Q ss_pred             ccChhhHHHHHHH-hc
Q 021082          277 LVGPVIVYSFMQA-AG  291 (317)
Q Consensus       277 FVGPttvysFMQA-vG  291 (317)
                      -|||-|+-.+|.. .|
T Consensus       217 GIG~~TA~~ill~~lg  232 (295)
T 2jhn_A          217 GIGRWTAELVLSIALG  232 (295)
T ss_dssp             TCCHHHHHHHHHHTTC
T ss_pred             CcCHHHHHHHHHHccC
Confidence            9999999887764 56

>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A

Probab=89.03  E-value=2  Score=39.74  Aligned_cols=128  Identities=18%  Similarity=0.145  Sum_probs=92.0

Q ss_pred             ChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHHHH
Q 021082          131 DKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG-----------F-DPKSVAKMGEKEIL  198 (317)
Q Consensus       131 dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~-----------F-D~~~VA~~~eedie  198 (317)
                      ||.+..-.+.--|..+.. .-.||.|+-.+.-.-.||..+.+-...+.++|..           | +|+.+|..+++++.
T Consensus        95 Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~  173 (290)
T 3i0w_A           95 DPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFE  173 (290)
T ss_dssp             SHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHH
Confidence            677766666667766655 6689999999999999999999999999999864           5 99999999999998


Q ss_pred             HhhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCccc
Q 021082          199 EISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLV  278 (317)
Q Consensus       199 ~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFV  278 (317)
                      ++    ++=   .|.+.|+.=|+++.+   .+.++...- ..    +                 ....-+.|.  .++-|
T Consensus       174 ~~----g~g---~Ra~~I~~~A~~i~~---g~~~l~~l~-~~----~-----------------~~~~~~~L~--~lpGI  219 (290)
T 3i0w_A          174 EC----TAG---FRAKYLKDTVDRIYN---GELNLEYIK-SL----N-----------------DNECHEELK--KFMGV  219 (290)
T ss_dssp             HT----TCG---GGHHHHHHHHHHHHT---TSSCHHHHH-HS----C-----------------HHHHHHHHT--TSTTC
T ss_pred             Hc----CCc---hHHHHHHHHHHHHHh---CCCCHHHHh-cC----C-----------------HHHHHHHHH--hCCCc
Confidence            83    331   278888888887742   233443221 10    0                 123445555  58999


Q ss_pred             ChhhHHHHHH-Hhccc
Q 021082          279 GPVIVYSFMQ-AAGLT  293 (317)
Q Consensus       279 GPttvysFMQ-AvG~v  293 (317)
                      ||-|+-.+|. +.|..
T Consensus       220 G~~TA~~ill~~lg~p  235 (290)
T 3i0w_A          220 GPQVADCIMLFSMQKY  235 (290)
T ss_dssp             CHHHHHHHHHHHHCCT
T ss_pred             CHHHHHHHHHHhCCCC
Confidence            9999877764 45653

>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A

Probab=88.56  E-value=0.81  Score=39.35  Aligned_cols=56  Identities=11%  Similarity=0.056  Sum_probs=50.2

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhch
Q 021082          153 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAE  210 (317)
Q Consensus       153 FE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr  210 (317)
                      |+.|+-+++-+=-+|.+|.+--+.|.+.|-  +|+.+|..++++|+++..--|.-++|
T Consensus        32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~~K   87 (161)
T 4e9f_A           32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYDLR   87 (161)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHHHH
T ss_pred             HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHHHH
Confidence            899999999999999999987777777765  89999999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	317
d1nkua_	187	a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (T	7e-77

>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Length = 187

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

 Score =  231 bits (590), Expect = 7e-77
 Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 2/184 (1%)

Query: 120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 179
           ++RC W++   D +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R 
Sbjct: 1   MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRA 58

Query: 180 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 239
            F  FDP  VA M E+++  +  +  I+    +++ I+ NA+  +++      F+ F+W 
Sbjct: 59  CFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWS 118

Query: 240 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 299
           +VN +P + +      +P  +P ++A+S+ L KRGF+ VG  I YSFMQA GL  DH+V 
Sbjct: 119 FVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVG 178

Query: 300 CFRY 303
           C  Y
Sbjct: 179 CCCY 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1nkua_	187	3-Methyladenine DNA glycosylase I (Tag) {Escherich	100.0
d1pu6a_	217	3-Methyladenine DNA glycosylase III (MagIII) {Heli	95.52
d1keaa_	217	Thymine-DNA glycosylase {Archaeon Methanobacterium	94.57
d1rrqa1	221	Catalytic domain of MutY {Bacillus stearothermophi	94.27
d1orna_	214	Endonuclease III {Escherichia coli [TaxId: 562]}	93.56
d2abka_	211	Endonuclease III {Escherichia coli [TaxId: 562]}	92.48
d1kg2a_	224	Catalytic domain of MutY {Escherichia coli [TaxId:	91.91
d1ngna_	144	Mismatch-specific thymine glycosylase domain of th	90.82
d2noha1	190	8-oxoguanine glycosylase {Human (Homo sapiens) [Ta	88.22
d1oxja1	62	RNA-binding protein Smaug {Drosophila melanogaster	80.32

>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9e-88  Score=599.72  Aligned_cols=184  Identities=36%  Similarity=0.792  Sum_probs=181.3

Q ss_pred             CccccCccCCCChhHhhhhhhCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 021082          120 LKRCNWITKNSDKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILE  199 (317)
Q Consensus       120 ~~RC~Wa~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~  199 (317)
                      |+||+|++  +||+|++|||+|||+|+|||+.|||+||||+|||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus         1 ~~RC~W~~--~~~~~~~YHD~eWG~p~~dD~~LFE~L~Le~fQaGLsW~~IL~Kr~~fr~aF~~Fd~~~vA~~~e~~ie~   78 (187)
T d1nkua_           1 MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVER   78 (187)
T ss_dssp             CCCCSSCC--SCHHHHHHHHHSSSSCCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHhccCCCcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCHHHHHcCCHHHHHH
Confidence            58999996  4899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcchhchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccC
Q 021082          200 ISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVG  279 (317)
Q Consensus       200 L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVG  279 (317)
                      ||+|++|||||+||+|||+||+++++|++|+|||++|||+||+++|++|++....++|++|++|++|||+|||+||+|||
T Consensus        79 Ll~d~~IIRNr~KI~Avi~NAr~~l~i~~e~gsf~~~lw~f~~~~p~~~~~~~~~~ip~~t~~s~~lsk~LKk~GfkFvG  158 (187)
T d1nkua_          79 LVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVG  158 (187)
T ss_dssp             HHTCCSSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTCCEECCCSSGGGSCSCCHHHHHHHHHHHHHTCCCCC
T ss_pred             HhccCCeeechHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCcCCCccCHHHhhcCCHHHHHHHHHHHhcCCeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccccccccccchh
Q 021082          280 PVIVYSFMQAAGLTIDHLVDCFRYSE  305 (317)
Q Consensus       280 PttvysFMQAvG~vnDHl~~C~r~~~  305 (317)
                      ||||||||||+||||||+++||+|..
T Consensus       159 pt~~ysfmqa~G~vndH~~~C~~~~~  184 (187)
T d1nkua_         159 TTICYSFMQACGLVNDHVVGCCCYPG  184 (187)
T ss_dssp             HHHHHHHHHHHTSEECCCSSSSSCCS
T ss_pred             hHHHHHHHHHcCCcCcccCCCCCCCC
Confidence            99999999999999999999999976

>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase III (MagIII)
domain: 3-Methyladenine DNA glycosylase III (MagIII)
species: Helicobacter pylori [TaxId: 210]

Probab=95.52  E-value=0.046  Score=46.83  Aligned_cols=109  Identities=20%  Similarity=0.234  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC-----CCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHH
Q 021082          151 QLFELLALSGMLMDYNWTEILKRKELFREAFGG-----FDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVK  225 (317)
Q Consensus       151 ~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~-----FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~  225 (317)
                      --||.|+-++..--.+|..+.+--..++++|..     .+|+.|+.+++++|++++..-|.  .+.|.+.+..=|+.+. 
T Consensus        28 ~pfe~lv~aIL~Qqts~~~a~~a~~~L~~~~~~~~~~~~t~~~la~a~~eel~~~ir~~G~--~~~KA~~i~~~a~~i~-  104 (217)
T d1pu6a_          28 LKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGF--YNQKAKRLIDLSGNIL-  104 (217)
T ss_dssp             TSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSC--HHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccCCCHHHHHCCCHHHHHHHHHHCCC--cHHHHHHHHHHHHHHH-
Confidence            349999999999999999998766666666643     37999999999999999998887  5567778877777764 


Q ss_pred             HHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhc
Q 021082          226 ILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAG  291 (317)
Q Consensus       226 i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAvG  291 (317)
                        ++++++.+.        +                 -...-++|.  .++-|||-|+..+|.-++
T Consensus       105 --~~~~~~~~~--------~-----------------~~~~~~~L~--~lpGIG~kTA~~vl~~~~  141 (217)
T d1pu6a_         105 --KDFQSFENF--------K-----------------QEVTREWLL--DQKGIGKESADAILCYAC  141 (217)
T ss_dssp             --HHHSSHHHH--------H-----------------HHCCHHHHH--TSTTCCHHHHHHHHHHTT
T ss_pred             --HhhhhcccC--------C-----------------cHHHHHHHH--HHhhhhhHHHHHHHHHHc
Confidence              355544221        0                 011233565  479999999999987664

>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Thymine-DNA glycosylase
species: Archaeon Methanobacterium thermoformicicum [TaxId: 145262]

Probab=94.57  E-value=0.15  Score=43.36  Aligned_cols=108  Identities=18%  Similarity=0.221  Sum_probs=80.4

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcCC
Q 021082          153 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGS  232 (317)
Q Consensus       153 FE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GS  232 (317)
                      |+.|+-+++-.-=+|.+|.+-.+.|.+.|-  +++.+|..++++|+++..--|.-+  .|-..+..=|+.+.   ++||+
T Consensus        34 ~~vLv~~iLsqqT~~~~v~~~~~~l~~~~p--t~~~la~a~~~~l~~~i~~~G~~~--~KA~~l~~~a~~i~---~~~~g  106 (217)
T d1keaa_          34 YVILITEILLRRTTAGHVKKIYDKFFVKYK--CFEDILKTPKSEIAKDIKEIGLSN--QRAEQLKELARVVI---NDYGG  106 (217)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHCC--SHHHHHHSCHHHHHHHTGGGSCHH--HHHHHHHHHHHHHH---HHHTT
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHhcc--cHHHHHHhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHHH---hhccC
Confidence            899999999999999999999999998886  799999999999999998766654  45556666566653   45543


Q ss_pred             HHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh-----cccccccc
Q 021082          233 FSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA-----GLTIDHLV  298 (317)
Q Consensus       233 F~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQAv-----G~vnDHl~  298 (317)
                                            .+|..       -++|.+  ..-|||.|+.+.|.-+     ++|++|..
T Consensus       107 ----------------------~~p~~-------~~~L~~--LpGVG~kTA~~il~~~~~~~~~~vD~~v~  146 (217)
T d1keaa_         107 ----------------------RVPRN-------RKAILD--LPGVGKYTCAAVMCLAFGKKAAMVDANFV  146 (217)
T ss_dssp             ----------------------SCCSC-------HHHHHT--STTCCHHHHHHHHHHTTCCCCCCCCHHHH
T ss_pred             ----------------------Ccchh-------hHHHHH--HHhhhhhhhHHHHHHhcCCcccccccchh
Confidence                                  12221       134554  7889999998887643     34555543

>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.27  E-value=0.28  Score=41.44  Aligned_cols=116  Identities=20%  Similarity=0.273  Sum_probs=81.4

Q ss_pred             hHhhhhhhCCCccc--cChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhch
Q 021082          133 VYVAFHDECWGVPV--YDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAE  210 (317)
Q Consensus       133 ly~~YHD~EWG~Pv--~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr  210 (317)
                      +..-|+++.  ++.  ...+--||.|+-+++-.--+|.+|.+-...|.+.|.  +++.++..++++|+++..--+.-+  
T Consensus         9 l~~wy~~~~--r~lpWr~~~dp~~vLV~~iLsqqT~~~~v~~~~~~L~~~~~--t~~~la~a~~~~l~~~i~~~G~~~--   82 (221)
T d1rrqa1           9 LLDWFARER--RDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFP--TLEALADADEDEVLKAWEGLGYYS--   82 (221)
T ss_dssp             HHHHHHHHC--CCCGGGSCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSC--SHHHHHHSCHHHHHHHHTTSSCTH--
T ss_pred             HHHHHHhcC--CCCCCCCCCCHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHhhcHHHHHhhhccchhhh--
Confidence            444455553  222  133345899999999999999999999999999985  789999999999999999888753  


Q ss_pred             hhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHH
Q 021082          211 CRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQA  289 (317)
Q Consensus       211 ~KI~AVi~NAr~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQA  289 (317)
                       |-..++..|+.++   .++++                      ++|..       -.+|.+  ..-|||.|+.+.|.-
T Consensus        83 -ra~~l~~~~~~~~---~~~~G----------------------~vp~~-------~~~Ll~--LpGIG~kTA~~il~~  126 (221)
T d1rrqa1          83 -RVRNLHAAVKEVK---TRYGG----------------------KVPDD-------PDEFSR--LKGVGPYTVGAVLSL  126 (221)
T ss_dssp             -HHHHHHHHHHHHH---HHHTT----------------------CCCCS-------HHHHHT--STTCCHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHh---hhcCC----------------------CCchH-------HHHHHH--HHHhhhHHHHHHHHH
Confidence             4455666665553   34432                      12221       124443  688899888888743

>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.61  Score=39.14  Aligned_cols=72  Identities=14%  Similarity=0.174  Sum_probs=60.1

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcC
Q 021082          153 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFG  231 (317)
Q Consensus       153 FE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~G  231 (317)
                      |+.|+-+++-.==+|.+|.+-.+.|.+.|.  +++.+|..++++++.+..--+.-++  |-+.+...|+.+.   +++|
T Consensus        31 ~~vLVs~iLsqqT~~~~v~~~~~~l~~~~p--t~~~la~~~~~e~~~~i~~~g~y~~--ka~~l~~~a~~i~---~~~~  102 (214)
T d1orna_          31 FELLIAVVLSAQCTDALVNKVTKRLFEKYR--TPHDYIAVPLEELEQDIRSIGLYRN--KARNIQKLCAMLI---DKYN  102 (214)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHCC--SHHHHHSSCHHHHHHHTGGGSSHHH--HHHHHHHHHHHHH---HHST
T ss_pred             HHHHHHHHHHhcChHHHHHHHHhhhhcccC--chhhhhhccHHHhhhhhhhhhhhhH--HHHHHHHHhhhHH---HHhC
Confidence            899999999999999999999999999886  5699999999999999988777554  5556777777663   4555

>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.28  Score=41.44  Aligned_cols=99  Identities=14%  Similarity=0.179  Sum_probs=76.0

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHHHHHHHhcCC
Q 021082          153 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGS  232 (317)
Q Consensus       153 FE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~il~i~~E~GS  232 (317)
                      ||.|+-+++-.=-+|.+|.+-.+.|.+.|  .+++.++..++++|+++..--|.-+  .|-+.+..-|+.+   .+++|+
T Consensus        30 ~~vli~~iLsqqT~~~~v~~~~~~l~~~~--~t~~~la~a~~~~l~~~i~~~G~y~--~Ka~~l~~~a~~i---~~~~~g  102 (211)
T d2abka_          30 FELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGLYN--SKAENIIKTCRIL---LEQHNG  102 (211)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTTHH--HHHHHHHHHHHHH---HHHTTT
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhc--cChHHHHhhhHhHhHHHHHHhhhhh--hHHHHHHHHHHHH---HHHhcC
Confidence            89999999999999999999999998877  4889999999999999999877744  5667777777776   356554


Q ss_pred             HHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHH
Q 021082          233 FSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQA  289 (317)
Q Consensus       233 F~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQA  289 (317)
                                            .+|..       -++|++  ..-|||-|+.+.|--
T Consensus       103 ----------------------~~p~~-------~~~L~~--LpGVG~~TA~~Il~~  128 (211)
T d2abka_         103 ----------------------EVPED-------RAALEA--LPGVGRKTANVVLNT  128 (211)
T ss_dssp             ----------------------SCCSC-------HHHHHH--STTCCHHHHHHHHHH
T ss_pred             ----------------------chhHH-------HHHHHH--HHhhchHHHHHHHHH
Confidence                                  12221       124443  788898888777653

>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Escherichia coli [TaxId: 562]

Probab=91.91  E-value=0.87  Score=38.34  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=78.9

Q ss_pred             CCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhH
Q 021082          141 CWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNA  220 (317)
Q Consensus       141 EWG~Pv~DDr~LFE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NA  220 (317)
                      ...-|-...+--|+.|+-+++-+==+|.+|.+-.+.|.+.|.  +++.+|..++++|+++..--+.-+   |-+-++..|
T Consensus        19 ~~~lPWr~~~~p~~vlvs~iLsqqT~~~~v~~~~~~l~~~~p--t~~~la~a~~~~l~~~i~~~g~~~---ka~~l~~~~   93 (224)
T d1kg2a_          19 RKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFP--TVTDLANAPLDEVLHLWTGLGYYA---RARNLHKAA   93 (224)
T ss_dssp             CCCSGGGSSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCS--SHHHHHHSCHHHHHHHHTTSCCTH---HHHHHHHHH
T ss_pred             CCCCCCCCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHhc--cHHHHHHhhHHHHHhHhhhhhHHH---HHHHHHHhh
Confidence            333343333344899999999999999999999999999987  789999999999999999888643   225566666


Q ss_pred             HHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHH
Q 021082          221 KCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQA  289 (317)
Q Consensus       221 r~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQA  289 (317)
                      +.+.   .++|+                      ++|..       -++|.+  ..-|||-|+.+.|.-
T Consensus        94 ~~i~---~~~~g----------------------~vp~~-------~~~L~~--LpGVG~kTA~~il~~  128 (224)
T d1kg2a_          94 QQVA---TLHGG----------------------KFPET-------FEEVAA--LPGVGRSTAGAILSL  128 (224)
T ss_dssp             HHHH---HHSTT----------------------SCCCS-------HHHHHT--STTCCHHHHHHHHHH
T ss_pred             hhhh---hhccC----------------------CcchH-------HHHHHH--HHhhhhhhhHHHHHH
Confidence            6653   44433                      12221       124544  788999999888764

>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.82  E-value=0.43  Score=38.09  Aligned_cols=67  Identities=12%  Similarity=0.086  Sum_probs=56.5

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHhHHHH
Q 021082          153 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI  223 (317)
Q Consensus       153 FE~L~LE~fQAGLSW~tILkKR~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~NAr~i  223 (317)
                      |+.|+-+++-.=-+|..+.+-.+.|.+.|-  +|+.++..++++|++++..-|.-+.  |-+.|++-|+.+
T Consensus        21 f~~LV~~ILsqqT~~~~v~~v~~~L~~~~p--t~e~la~a~~~el~~~Ir~~G~~~~--KAk~I~~~a~~~   87 (144)
T d1ngna_          21 WKLLIATIFLNRTSGKMAIPVLWEFLEKYP--SAEVARAADWRDVSELLKPLGLYDL--RAKTIIKFSDEY   87 (144)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHSC--SHHHHHHSCHHHHHHHTGGGSCHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCC--chhhhhccCHHHHHHHHHhhhhHHH--HHHHHHHHHhhH
Confidence            788999999999999999988888877765  7999999999999999999998654  656666667665

>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 8-oxoguanine glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.22  E-value=3.7  Score=33.21  Aligned_cols=110  Identities=20%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCC-------------CHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHh
Q 021082          153 FELLALSGMLMDYNWTEILKRKELFREAFGGF-------------DPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN  219 (317)
Q Consensus       153 FE~L~LE~fQAGLSW~tILkKR~~fr~AF~~F-------------D~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~N  219 (317)
                      ||.|+-.+.-...|+..+-+-...+.+.|..+             +|+.++..+++++.+....    .  .|-+.++.=
T Consensus         3 fe~lv~~IisQq~s~~~~~~~~~~L~~~~G~~~~~~~~~~~~~FP~~~~la~~~~e~~l~~~~~----~--~ra~~i~~~   76 (190)
T d2noha1           3 IECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGL----G--YRARYVSAS   76 (190)
T ss_dssp             HHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHHSTTHHHHHHHTTC----T--THHHHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHHCCCccccCcchhhccCCHHHHHHcchHHHHHhcch----H--HHHHHHHHH
Confidence            89999999999999999999999999999543             7999999998887655432    1  255677777


Q ss_pred             HHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHH-Hhcc
Q 021082          220 AKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQ-AAGL  292 (317)
Q Consensus       220 Ar~il~i~~E~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~lS~~lsKdLKkrGFkFVGPttvysFMQ-AvG~  292 (317)
                      |+.+.   +++++....-. .             .+.    + .+.+-+.|.  .++-|||-|+..+|. +.|-
T Consensus        77 a~~i~---~~~~~~~~l~~-l-------------~~~----~-~~~~~~~L~--~l~GIG~wTA~~il~~~~~~  126 (190)
T d2noha1          77 ARAIL---EEQGGLAWLQQ-L-------------RES----S-YEEAHKALC--ILPGVGTQVADCICLMALDK  126 (190)
T ss_dssp             HHHHH---HTSCSHHHHHH-T-------------TTS----C-HHHHHHHHT--TSTTCCHHHHHHHHHHHSCC
T ss_pred             HHHHH---HhcccccCHHH-h-------------cCC----C-cHHHHHHHH--HcCCchHHHHHHHHHHHcCC
Confidence            77774   34443321110 0             001    1 123455664  489999999998765 4453

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.32  E-value=0.56  Score=32.59  Aligned_cols=42  Identities=12%  Similarity=0.167  Sum_probs=35.5

Q ss_pred             HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcchhchhhHHHHHHh
Q 021082          175 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN  219 (317)
Q Consensus       175 ~~fr~AF~~FD~~~VA~~~eedie~L~~d~~IIRnr~KI~AVi~N  219 (317)
                      +.|.+.|.+.+++.+..++|+|++++--.+   =||.||...|..
T Consensus        18 ~~Y~~~F~~~~~d~l~~lt~~dL~~lGI~~---GhRkkil~~I~~   59 (62)
T d1oxja1          18 HKYIELFKNMTYEEMLLITEDFLQSVGVTK---GASHKLALCIDK   59 (62)
T ss_dssp             GGGGGGGTTCCHHHHTTCCHHHHHHTTCCH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHhCCHHHHHHcCCCH---HHHHHHHHHHHH
Confidence            578889999999999999999999987754   488999877764