Citrus Sinensis ID: 021094

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFTELDQWELFPIRTLMGLVTKEMLYFVTI
ccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEccccccccccccccccEEEcccccccccccccHHHHHHHHHHHcccccccccEEEEEEccEEEEEEcHHHHHHHHccccEEEEEcccccEEccEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccEEEEEEEEEEEEEcccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHcccccEEEEEEEEEccccccccEEccEEEEEcc
ccccccccEEEEEEccccccccEEcHHHcccccccccccEccccccccccccHHHcccccccccccccccccHHHHHEEcccccccccccHHHHHHHHHHHHHcccccccccEEEEEccEEEEEccHHHHHHHHHcccEEEEEcccccccccEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHEHHHHHHHHHHcHEEEEEEEEEEEEcccccEEEEEcccccccccccccccEEcccccccccHHHHHHHHHHHHccccHHHHHHcccccEEEEEEEcccccccccccccEEEEEcc
macnfhhltqtirlsfpplhnfkvsdaftnkslittfpvrfsvhssakltTSIRSLRVDTasisyrssctftwddvfrvsqpeyspddssdlrGYFEKIKicnrgsemqseffpfiiedqvagythnrfashlrkyddvfiysgnnggrfgshvklnsklktadERTRVVGEVIKCLaeeelipdiqnelypvastfgspiffsldraaapyfgikayavplngyvekdgqkflwigkrsqvkstypgmldilaggglphgiacGENIIKECeeeagiprsisnrytsfteldqwelfpirTLMGLVTKEMLYFVTI
macnfhhltqtirlsfpplhNFKVSDAFTNKSLITTFpvrfsvhssaklttsirslrvdtasisyrssctftwddvfrvsqpeyspddssdlrGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNnggrfgshvklnsklktadertRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFTELDQWELFPIRTLMGLVTKEMLYFVTI
MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFTELDQWELFPIRTLMGLVTKEMLYFVTI
**CNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVS***********LRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFTELDQWELFPIRTLMGLVTKEMLYFVT*
********TQTIRLSFPPLHNF**********LITTFPVRFS****************************FTWD********************YFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFTELDQWELFPIRTLMGLVTKEMLYFVTI
MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFTELDQWELFPIRTLMGLVTKEMLYFVTI
**C*FHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTA******SCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFTELDQWELFPIRTLMGLVTKEMLYFVTI
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRYTSFTELDQWELFPIRTLMGLVTKEMLYFVTI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query317 2.2.26 [Sep-21-2011]
Q8VXZ0374 Nudix hydrolase 20, chlor yes no 0.886 0.751 0.493 5e-76
P0C026365 Nudix hydrolase 24, chlor no no 0.735 0.638 0.526 5e-72
P47173342 Uncharacterized protein Y yes no 0.400 0.371 0.326 6e-09
P41888 569 Thiamine pyrophosphokinas yes no 0.413 0.230 0.273 4e-06
>sp|Q8VXZ0|NUD20_ARATH Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1 Back     alignment and function desciption
 Score =  284 bits (727), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 149/302 (49%), Positives = 195/302 (64%), Gaps = 21/302 (6%)

Query: 1   MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDT 60
           MA  F  L  T+  S    H      A T + L    P+     SS+   + +R  R  +
Sbjct: 1   MASGFCSLALTVTTSLFSSH------AITRRVL----PI-LRWRSSSMSLSPLRHSRALS 49

Query: 61  ASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQ 120
           A+ +   S +FTWDDV    + EY   +SSDL G+FEKI  CNRGSE   EF PF+IE+Q
Sbjct: 50  AATTVPISSSFTWDDVIETGRAEY---NSSDLTGFFEKINRCNRGSEKLGEFIPFVIEEQ 106

Query: 121 VAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLA 178
           + GY H RF  +LR++ D+F +S N     R   +V LN  L+  ++RTR V +VIK L 
Sbjct: 107 IVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILG 166

Query: 179 EEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGK 238
           ++ +IP I+NELYPV  +F +P+FFSL+RAAAPYFGIK Y V +NGYVE+DGQK LWIGK
Sbjct: 167 DKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKLLWIGK 226

Query: 239 RSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR-----YTSFTELD 293
           RS  KSTYPGMLD L  GGLPHGI+CG N++KECEEEAGI R+I++R       S+ ++D
Sbjct: 227 RSLSKSTYPGMLDHLVAGGLPHGISCGGNLVKECEEEAGISRAIADRAIAVGAVSYLDID 286

Query: 294 QW 295
           Q+
Sbjct: 287 QY 288
Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -
>sp|P0C026|NUD24_ARATH Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24 PE=2 SV=1 Back     alignment and function description
>sp|P47173|YJ9J_YEAST Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJR142W PE=1 SV=1 Back     alignment and function description
>sp|P41888|TNR3_SCHPO Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tnr3 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
255549044329 Nudix hydrolase 20, chloroplast precurso 0.835 0.805 0.589 2e-90
225445320364 PREDICTED: nudix hydrolase 20, chloropla 0.823 0.717 0.557 5e-82
359484616364 PREDICTED: nudix hydrolase 20, chloropla 0.823 0.717 0.557 6e-82
297738863392 unnamed protein product [Vitis vinifera] 0.823 0.665 0.561 8e-82
224119736367 predicted protein [Populus trichocarpa] 0.706 0.610 0.641 2e-80
147791238 448 hypothetical protein VITISV_032861 [Viti 0.823 0.582 0.507 7e-78
224098093258 predicted protein [Populus trichocarpa] 0.687 0.844 0.632 1e-77
357500493391 Nudix hydrolase [Medicago truncatula] gi 0.706 0.572 0.624 5e-76
449461965370 PREDICTED: nudix hydrolase 20, chloropla 0.798 0.683 0.540 6e-76
297808005371 hypothetical protein ARALYDRAFT_909981 [ 0.832 0.711 0.509 2e-75
>gi|255549044|ref|XP_002515578.1| Nudix hydrolase 20, chloroplast precursor, putative [Ricinus communis] gi|223545522|gb|EEF47027.1| Nudix hydrolase 20, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/290 (58%), Positives = 214/290 (73%), Gaps = 25/290 (8%)

Query: 1   MACNF----HHL-TQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRS 55
           MAC+     HHL TQ+I  SFP L        F +KS I+  P + S  S   + ++ RS
Sbjct: 1   MACSIAHRHHHLFTQSIHFSFPSL--------FMSKSFISH-PSK-STRSFCPIKSTSRS 50

Query: 56  LRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPF 115
           + V + + S      FTWDDVFRVSQPEY P+DSSDL G+F KI++CNRGSE+QSEF  F
Sbjct: 51  MSVISGASS------FTWDDVFRVSQPEYVPNDSSDLSGFFHKIQLCNRGSELQSEFISF 104

Query: 116 IIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIK 175
           +IEDQ  GY HN F   LR++ DVF++  +N     S+V L+ +L+TA++RTR VG+VIK
Sbjct: 105 LIEDQFVGYIHNNFVEQLRRFKDVFVFLQSNH----SYVSLHERLQTAEDRTRAVGQVIK 160

Query: 176 CLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLW 235
           CL EE LIP I+NELYPV S+FGSP++FSL+RAAAPYFGIK Y + +NG+VE+DG+KFLW
Sbjct: 161 CLGEEGLIPGIRNELYPVVSSFGSPVYFSLERAAAPYFGIKVYGIHMNGFVERDGEKFLW 220

Query: 236 IGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNR 285
           IGKRS VK TYPGMLD L  GGLPHGI+C EN+IKECEEEAGIPRSIS++
Sbjct: 221 IGKRSGVKPTYPGMLDHLVAGGLPHGISCEENVIKECEEEAGIPRSISHK 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445320|ref|XP_002281437.1| PREDICTED: nudix hydrolase 20, chloroplastic [Vitis vinifera] gi|297738865|emb|CBI28110.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484616|ref|XP_002281417.2| PREDICTED: nudix hydrolase 20, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738863|emb|CBI28108.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224119736|ref|XP_002331148.1| predicted protein [Populus trichocarpa] gi|222873231|gb|EEF10362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147791238|emb|CAN70130.1| hypothetical protein VITISV_032861 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224098093|ref|XP_002334575.1| predicted protein [Populus trichocarpa] gi|222873209|gb|EEF10340.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357500493|ref|XP_003620535.1| Nudix hydrolase [Medicago truncatula] gi|355495550|gb|AES76753.1| Nudix hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449461965|ref|XP_004148712.1| PREDICTED: nudix hydrolase 20, chloroplastic-like [Cucumis sativus] gi|449519376|ref|XP_004166711.1| PREDICTED: nudix hydrolase 20, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297808005|ref|XP_002871886.1| hypothetical protein ARALYDRAFT_909981 [Arabidopsis lyrata subsp. lyrata] gi|297317723|gb|EFH48145.1| hypothetical protein ARALYDRAFT_909981 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
TAIR|locus:2150240374 NUDT20 "nudix hydrolase homolo 0.782 0.663 0.534 1.6e-70
TAIR|locus:2150260365 NUDT24 "nudix hydrolase homolo 0.817 0.709 0.501 4.4e-68
FB|FBgn0039958 349 CG12567 [Drosophila melanogast 0.542 0.492 0.335 3e-21
ZFIN|ZDB-GENE-060503-173297 si:dkey-6n6.2 "si:dkey-6n6.2" 0.589 0.629 0.323 4.4e-20
ASPGD|ASPL0000062708319 AN0193 [Emericella nidulans (t 0.369 0.366 0.355 5.5e-14
UNIPROTKB|B3NKG4 2299 GG21418 "GG21418" [Drosophila 0.391 0.053 0.376 2.9e-13
CGD|CAL0005587305 orf19.4112 [Candida albicans ( 0.384 0.4 0.352 1.9e-11
UNIPROTKB|G4MSN7341 MGG_07079 "Nudix hydrolase 20" 0.378 0.351 0.338 3.9e-11
SGD|S000003903342 YJR142W "Putative protein of u 0.400 0.371 0.333 1.8e-09
POMBASE|SPAC6F12.05c 569 tnr3 "thiamine diphosphokinase 0.413 0.230 0.287 2.6e-06
TAIR|locus:2150240 NUDT20 "nudix hydrolase homolog 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 138/258 (53%), Positives = 181/258 (70%)

Query:    45 SSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNR 104
             SS+   + +R  R  +A+ +   S +FTWDDV    + EY+   SSDL G+FEKI  CNR
Sbjct:    34 SSSMSLSPLRHSRALSAATTVPISSSFTWDDVIETGRAEYN---SSDLTGFFEKINRCNR 90

Query:   105 GSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKT 162
             GSE   EF PF+IE+Q+ GY H RF  +LR++ D+F +S N     R   +V LN  L+ 
Sbjct:    91 GSEKLGEFIPFVIEEQIVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQK 150

Query:   163 ADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPL 222
              ++RTR V +VIK L ++ +IP I+NELYPV  +F +P+FFSL+RAAAPYFGIK Y V +
Sbjct:   151 PEDRTRAVADVIKILGDKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHM 210

Query:   223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282
             NGYVE+DGQK LWIGKRS  KSTYPGMLD L  GGLPHGI+CG N++KECEEEAGI R+I
Sbjct:   211 NGYVERDGQKLLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGGNLVKECEEEAGISRAI 270

Query:   283 SNRY-----TSFTELDQW 295
             ++R       S+ ++DQ+
Sbjct:   271 ADRAIAVGAVSYLDIDQY 288
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016787 "hydrolase activity" evidence=IEA;ISS
TAIR|locus:2150260 NUDT24 "nudix hydrolase homolog 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0039958 CG12567 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-173 si:dkey-6n6.2 "si:dkey-6n6.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062708 AN0193 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|B3NKG4 GG21418 "GG21418" [Drosophila erecta (taxid:7220)] Back     alignment and assigned GO terms
CGD|CAL0005587 orf19.4112 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|G4MSN7 MGG_07079 "Nudix hydrolase 20" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
SGD|S000003903 YJR142W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPAC6F12.05c tnr3 "thiamine diphosphokinase Tnr3/ Nudix hydrolase fusion protein" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
PLN02839372 PLN02839, PLN02839, nudix hydrolase 1e-103
cd03676180 cd03676, Nudix_hydrolase_3, Members of the Nudix h 2e-37
cd04692144 cd04692, Nudix_Hydrolase_33, Members of the Nudix 2e-07
cd04697126 cd04697, Nudix_Hydrolase_38, Members of the Nudix 4e-06
cd04699129 cd04699, Nudix_Hydrolase_39, Members of the Nudix 6e-04
PRK15393180 PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisio 0.001
>gnl|CDD|178432 PLN02839, PLN02839, nudix hydrolase Back     alignment and domain information 
 Score =  307 bits (788), Expect = e-103
 Identities = 145/279 (51%), Positives = 189/279 (67%), Gaps = 11/279 (3%)

Query: 24  VSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPE 83
           V+  F++ +LI T   R S  S + L  S       T  IS     +FTWDDV    + E
Sbjct: 12  VTSLFSSHALIPTLRWRSSSMSRSPLRHSRAVSAATTVPIS----SSFTWDDVIETGRAE 67

Query: 84  YSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYS 143
           Y P +SSDL G+ EK+  CNRGSE   EF PF+IE+Q+ GY H  F  +LR++ D+F +S
Sbjct: 68  YVPQNSSDLTGFLEKVDRCNRGSEKLGEFIPFVIEEQIVGYIHKGFTEYLREFHDIFTFS 127

Query: 144 --GNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPI 201
             G+   R   HV LN  L+  ++RTR V +VIK L ++ +IP I+NELYPV  +F +P+
Sbjct: 128 QNGSCPDRVDGHVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPVKPSFNAPV 187

Query: 202 FFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHG 261
           FFSL+RAAAPYFGIK Y V +NGYVE+DGQKFLWIGKRS  KSTYPGMLD L  GGLPHG
Sbjct: 188 FFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHG 247

Query: 262 IACGENIIKECEEEAGIPRSISNR-----YTSFTELDQW 295
           I+CGEN++KECEEEAGI ++I++R       S+ ++DQ+
Sbjct: 248 ISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQY 286

Length = 372
>gnl|CDD|239648 cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>gnl|CDD|185291 PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 317
PLN02839372 nudix hydrolase 100.0
KOG4313306 consensus Thiamine pyrophosphokinase [Nucleotide t 100.0
cd03676180 Nudix_hydrolase_3 Members of the Nudix hydrolase s 99.97
PLN02791 770 Nudix hydrolase homolog 99.78
PLN02552247 isopentenyl-diphosphate delta-isomerase 99.77
cd02885165 IPP_Isomerase Isopentenyl diphosphate (IPP) isomer 99.77
PRK03759184 isopentenyl-diphosphate delta-isomerase; Provision 99.75
TIGR02150158 IPP_isom_1 isopentenyl-diphosphate delta-isomerase 99.7
PRK15393180 NUDIX hydrolase YfcD; Provisional 99.69
cd04692144 Nudix_Hydrolase_33 Members of the Nudix hydrolase 99.65
COG1443185 Idi Isopentenyldiphosphate isomerase [Lipid metabo 99.57
cd04697126 Nudix_Hydrolase_38 Members of the Nudix hydrolase 99.39
cd04693127 Nudix_Hydrolase_34 Members of the Nudix hydrolase 99.33
PRK15472141 nucleoside triphosphatase NudI; Provisional 99.21
cd03426157 CoAse Coenzyme A pyrophosphatase (CoAse), a member 99.1
cd04682122 Nudix_Hydrolase_23 Members of the Nudix hydrolase 99.08
cd04664129 Nudix_Hydrolase_7 Members of the Nudix hydrolase s 98.96
cd04691117 Nudix_Hydrolase_32 Members of the Nudix hydrolase 98.94
cd04694143 Nudix_Hydrolase_35 Members of the Nudix hydrolase 98.86
PF00293134 NUDIX: NUDIX domain; InterPro: IPR000086 The gener 98.83
cd04684128 Nudix_Hydrolase_25 Contains a crystal structure of 98.79
cd04699129 Nudix_Hydrolase_39 Members of the Nudix hydrolase 98.75
cd04683120 Nudix_Hydrolase_24 Members of the Nudix hydrolase 98.73
cd04681130 Nudix_Hydrolase_22 Members of the Nudix hydrolase 98.71
cd03427137 MTH1 MutT homolog-1 (MTH1) is a member of the Nudi 98.71
cd03425124 MutT_pyrophosphohydrolase The MutT pyrophosphohydr 98.69
cd04673122 Nudix_Hydrolase_15 Members of the Nudix hydrolase 98.67
PRK09438148 nudB dihydroneopterin triphosphate pyrophosphatase 98.65
cd03673131 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy 98.65
cd04678129 Nudix_Hydrolase_19 Members of the Nudix hydrolase 98.65
PRK10776129 nucleoside triphosphate pyrophosphohydrolase; Prov 98.63
cd03671147 Ap4A_hydrolase_plant_like Diadenosine tetraphospha 98.63
cd04680120 Nudix_Hydrolase_21 Members of the Nudix hydrolase 98.61
cd04688126 Nudix_Hydrolase_29 Members of the Nudix hydrolase 98.6
cd04670127 Nudix_Hydrolase_12 Members of the Nudix hydrolase 98.58
cd04696125 Nudix_Hydrolase_37 Members of the Nudix hydrolase 98.57
cd04679125 Nudix_Hydrolase_20 Members of the Nudix hydrolase 98.57
cd03430144 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann 98.57
cd02883123 Nudix_Hydrolase Nudix hydrolase is a superfamily o 98.55
cd03424137 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) 98.55
cd04700142 DR1025_like DR1025 from Deinococcus radiodurans, a 98.53
cd04677132 Nudix_Hydrolase_18 Members of the Nudix hydrolase 98.53
cd04695131 Nudix_Hydrolase_36 Members of the Nudix hydrolase 98.53
PRK15434159 GDP-mannose mannosyl hydrolase NudD; Provisional 98.5
PRK10546135 pyrimidine (deoxy)nucleoside triphosphate pyrophos 98.48
cd04671123 Nudix_Hydrolase_13 Members of the Nudix hydrolase 98.47
cd04676129 Nudix_Hydrolase_17 Members of the Nudix hydrolase 98.47
cd03428130 Ap4A_hydrolase_human_like Diadenosine tetraphospha 98.47
cd04685133 Nudix_Hydrolase_26 Members of the Nudix hydrolase 98.46
cd03674138 Nudix_Hydrolase_1 Members of the Nudix hydrolase s 98.44
KOG0142225 consensus Isopentenyl pyrophosphate:dimethylallyl 98.43
TIGR00586128 mutt mutator mutT protein. All proteins in this fa 98.41
cd04689125 Nudix_Hydrolase_30 Members of the Nudix hydrolase 98.41
cd03429131 NADH_pyrophosphatase NADH pyrophosphatase, a membe 98.36
PRK00714156 RNA pyrophosphohydrolase; Reviewed 98.34
cd03675134 Nudix_Hydrolase_2 Contains a crystal structure of 98.34
cd04669121 Nudix_Hydrolase_11 Members of the Nudix hydrolase 98.29
cd04687128 Nudix_Hydrolase_28 Members of the Nudix hydrolase 98.26
PRK10707190 putative NUDIX hydrolase; Provisional 98.26
cd04662126 Nudix_Hydrolase_5 Members of the Nudix hydrolase s 98.25
cd04666122 Nudix_Hydrolase_9 Members of the Nudix hydrolase s 98.24
cd04511130 Nudix_Hydrolase_4 Members of the Nudix hydrolase s 98.22
PLN02325144 nudix hydrolase 98.21
cd04672123 Nudix_Hydrolase_14 Members of the Nudix hydrolase 98.18
cd04690118 Nudix_Hydrolase_31 Members of the Nudix hydrolase 98.17
PRK00241256 nudC NADH pyrophosphatase; Reviewed 98.14
cd03672145 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt 98.14
cd04667112 Nudix_Hydrolase_10 Members of the Nudix hydrolase 98.12
COG0494161 MutT NTP pyrophosphohydrolases including oxidative 98.11
PRK08999 312 hypothetical protein; Provisional 98.1
PLN02709222 nudix hydrolase 98.06
COG1051145 ADP-ribose pyrophosphatase [Nucleotide transport a 98.03
cd04686131 Nudix_Hydrolase_27 Members of the Nudix hydrolase 98.02
cd04661132 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L 98.0
PRK05379340 bifunctional nicotinamide mononucleotide adenylylt 97.84
cd04665118 Nudix_Hydrolase_8 Members of the Nudix hydrolase s 97.8
KOG3084345 consensus NADH pyrophosphatase I of the Nudix fami 97.7
PRK11762185 nudE adenosine nucleotide hydrolase NudE; Provisio 97.69
cd04663126 Nudix_Hydrolase_6 Members of the Nudix hydrolase s 97.56
TIGR02705156 nudix_YtkD nucleoside triphosphatase YtkD. The fun 97.53
TIGR00052185 nudix-type nucleoside diphosphatase, YffH/AdpP fam 97.45
cd04674118 Nudix_Hydrolase_16 Members of the Nudix hydrolase 97.37
COG2816279 NPY1 NTP pyrophosphohydrolases containing a Zn-fin 97.33
KOG3069 246 consensus Peroxisomal NUDIX hydrolase [Replication 97.19
PRK10729202 nudF ADP-ribose pyrophosphatase NudF; Provisional 97.04
PLN03143291 nudix hydrolase; Provisional 96.69
cd03670186 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) 96.56
PRK15009191 GDP-mannose pyrophosphatase NudK; Provisional 96.24
KOG2839145 consensus Diadenosine and diphosphoinositol polyph 96.17
KOG3041225 consensus Nucleoside diphosphate-sugar hydrolase o 95.87
cd03431118 DNA_Glycosylase_C DNA glycosylase (MutY in bacteri 95.75
KOG0648295 consensus Predicted NUDIX hydrolase FGF-2 and rela 88.92
COG4112203 Predicted phosphoesterase (MutT family) [General f 83.39
>PLN02839 nudix hydrolase Back     alignment and domain information 
Probab=100.00  E-value=2.3e-72  Score=545.29  Aligned_cols=271  Identities=52%  Similarity=0.962  Sum_probs=240.4

Q ss_pred             ecceeeeeeccccccceeeeeeecccccCcccccccccccceeecCCCCCCCCccchHHHHHHHHHhcCCCCCCCCeEeE
Q 021094           36 TFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPF  115 (317)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~cN~~~~~~~~~~PF  115 (317)
                      ++|+ |...|++.+..-....+...+..+++++++||||||||++++||++++++++++|+++|++||++.++++.|+||
T Consensus        21 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cn~~~~~~~~~~Pf   99 (372)
T PLN02839         21 LIPT-LRWRSSSMSRSPLRHSRAVSAATTVPISSSFTWDDVIETGRAEYVPQNSSDLTGFLEKVDRCNRGSEKLGEFIPF   99 (372)
T ss_pred             ccee-eEeecccccCCCCccccceeeEEeecccccccHHHHHhhcccccCccccchhhhhHHHHHHhhccccccccccCe
Confidence            4777 777774333333333333344455788899999999999999999999999999999999999998778999999


Q ss_pred             EECCEEEEeecHHHHHHHhcCCCeEEeeCCC--CCcccceEEeccCCCCHHHHHHHHHHHHHHHHHcCCCCCccCCeeEe
Q 021094          116 IIEDQVAGYTHNRFASHLRKYDDVFIYSGNN--GGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPV  193 (317)
Q Consensus       116 ~i~g~~vGyI~p~~~~~L~~~~~vF~~~~~~--~~~~g~~V~L~p~l~t~e~RT~al~~v~~~Lr~~g~i~Gwr~E~~~V  193 (317)
                      +|+|++||||+|.++++|.+|+++|.+..++  .+.....|+|++.+.++++||+++++++++|+++|.++|||||+|+|
T Consensus       100 ~v~gq~VG~I~~~~~~~L~~~~~vF~~~~~~~~~~~~~~~V~L~~~~~t~~~Rt~al~~v~~~lr~~g~~~gWRnE~y~V  179 (372)
T PLN02839        100 VIEEQIVGYIHKGFTEYLREFHDIFTFSQNGSCPDRVDGHVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPV  179 (372)
T ss_pred             EECCEEEEEECHHHHHHHhhCccceeeccccccccccCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCcccCcccc
Confidence            9999999999999999999999999986421  11223689999999999999999999999999999999999999999


Q ss_pred             eeCCCCceeEEEecccCCcCCccceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHHHHHhh
Q 021094          194 ASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECE  273 (317)
Q Consensus       194 ~~~~g~~~l~~ieRaa~~~fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~~RE~~  273 (317)
                      ++.+++++++.|||+|+++||+.+||||||||++++++.+|||+|||++|++|||||||+||||+++||++.||++|||+
T Consensus       180 ~~~~~~~~l~~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~  259 (372)
T PLN02839        180 KPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECE  259 (372)
T ss_pred             ccCCCCcceEEEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHH
Confidence            99888899999999999999999999999999987788899999999999999999999999999999999999999999


Q ss_pred             hhhCCCccccccce-----EEEEecCCCccccccccceeeeceEEEEeC
Q 021094          274 EEAGIPRSISNRYT-----SFTELDQWELFPIRTLMGLVTKEMLYFVTI  317 (317)
Q Consensus       274 EEAGL~~~l~~~~~-----SY~~~~~~~~~p~~~~~glv~pe~~yv~~~  317 (317)
                      |||||+.+++++++     +|.++++.          .++||++|+||.
T Consensus       260 EEAgLp~~l~~~~~~~G~VsY~~~~~~----------g~~~evly~YDL  298 (372)
T PLN02839        260 EEAGISKAIADRAIAVGAVSYMDIDQY----------CFKRDVLFCYDL  298 (372)
T ss_pred             HHcCCCHHHHhcceEeEEEEEEEEcCC----------ccccCEEEEeee
Confidence            99999999887655     88877764          578999999994

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PLN02791 Nudix hydrolase homolog Back     alignment and domain information
>PLN02552 isopentenyl-diphosphate delta-isomerase Back     alignment and domain information
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway Back     alignment and domain information
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional Back     alignment and domain information
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1 Back     alignment and domain information
>PRK15393 NUDIX hydrolase YfcD; Provisional Back     alignment and domain information
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism] Back     alignment and domain information
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PRK15472 nucleoside triphosphatase NudI; Provisional Back     alignment and domain information
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes Back     alignment and domain information
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family [] Back     alignment and domain information
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function Back     alignment and domain information
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily Back     alignment and domain information
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi) Back     alignment and domain information
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional Back     alignment and domain information
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily Back     alignment and domain information
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional Back     alignment and domain information
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily Back     alignment and domain information
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily Back     alignment and domain information
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate Back     alignment and domain information
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities Back     alignment and domain information
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional Back     alignment and domain information
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional Back     alignment and domain information
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily Back     alignment and domain information
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR00586 mutt mutator mutT protein Back     alignment and domain information
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP Back     alignment and domain information
>PRK00714 RNA pyrophosphohydrolase; Reviewed Back     alignment and domain information
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function Back     alignment and domain information
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PRK10707 putative NUDIX hydrolase; Provisional Back     alignment and domain information
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PLN02325 nudix hydrolase Back     alignment and domain information
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>PRK00241 nudC NADH pyrophosphatase; Reviewed Back     alignment and domain information
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex Back     alignment and domain information
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only] Back     alignment and domain information
>PRK08999 hypothetical protein; Provisional Back     alignment and domain information
>PLN02709 nudix hydrolase Back     alignment and domain information
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily Back     alignment and domain information
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional Back     alignment and domain information
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair] Back     alignment and domain information
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional Back     alignment and domain information
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD Back     alignment and domain information
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family Back     alignment and domain information
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X Back     alignment and domain information
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair] Back     alignment and domain information
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional Back     alignment and domain information
>PLN03143 nudix hydrolase; Provisional Back     alignment and domain information
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P Back     alignment and domain information
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional Back     alignment and domain information
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms] Back     alignment and domain information
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair] Back     alignment and domain information
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone Back     alignment and domain information
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
3dup_A300 Crystal Structure Of MuttNUDIX FAMILY HYDROLASE FRO 1e-31
>pdb|3DUP|A Chain A, Crystal Structure Of MuttNUDIX FAMILY HYDROLASE FROM RHODOSPIRILLUM Rubrum Atcc 11170 Length = 300 Back     alignment and structure 
Iteration: 1

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 9/191 (4%)
Query: 95  YFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHV 154
           + + ++ CN  +   S F  F+IE +  G+     A  L+ +  VF  + +        V
Sbjct: 5   FLKHVQDCN--THDLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTRDA-------V 55
Query: 155 KLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFG 214
            L++ L+T   RTR V +V+  LA+E ++P  + ELY V  ++G P    LDRA  P FG
Sbjct: 56  LLSASLRTPQSRTRAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLXLLDRAVVPTFG 115
Query: 215 IKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEE 274
           ++AY V LNGYV       LWIG+RS  KS  PG LD    GG P  ++  +N+IKEC E
Sbjct: 116 VRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNXVAGGQPADLSLRQNLIKECAE 175
Query: 275 EAGIPRSISNR 285
           EA +P +++ +
Sbjct: 176 EADLPEALARQ 186

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
3dup_A300 MUTT/nudix family protein; nudix superfamily hydro 1e-49
1q27_A171 Putative nudix hydrolase DR0079; radiation resista 2e-05
2fkb_A180 Putative nudix hydrolase YFCD; putative protein, M 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300 Back     alignment and structure
 Score =  165 bits (420), Expect = 1e-49
 Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 9/191 (4%)

Query: 95  YFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHV 154
           + + ++ CN      S F  F+IE +  G+     A  L+ +  VF  + +        V
Sbjct: 5   FLKHVQDCNT--HDLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTRD-------AV 55

Query: 155 KLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFG 214
            L++ L+T   RTR V +V+  LA+E ++P  + ELY V  ++G P    LDRA  P FG
Sbjct: 56  LLSASLRTPQSRTRAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFG 115

Query: 215 IKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEE 274
           ++AY V LNGYV       LWIG+RS  KS  PG LD +  GG P  ++  +N+IKEC E
Sbjct: 116 VRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAE 175

Query: 275 EAGIPRSISNR 285
           EA +P +++ +
Sbjct: 176 EADLPEALARQ 186
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171 Back     alignment and structure
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
3dup_A300 MUTT/nudix family protein; nudix superfamily hydro 100.0
2pny_A246 Isopentenyl-diphosphate delta-isomerase 2; caroten 99.77
2dho_A235 Isopentenyl-diphosphate delta-isomerase 1; alpha/b 99.76
1hzt_A190 Isopentenyl diphosphate delta-isomerase; dimethyla 99.6
1q27_A171 Putative nudix hydrolase DR0079; radiation resista 99.57
2fkb_A180 Putative nudix hydrolase YFCD; putative protein, M 99.57
3oga_A165 Nucleoside triphosphatase NUDI; salmonella enteric 98.9
3grn_A153 MUTT related protein; structural genomics, hydrola 98.9
1sjy_A159 MUTT/nudix family protein; nudix fold, alpha-beta- 98.87
3i9x_A187 MUTT/nudix family protein; structural genomics, hy 98.85
1nqz_A194 COA pyrophosphatase (MUTT/nudix family protein); D 98.84
3son_A149 Hypothetical nudix hydrolase; structural genomics, 98.79
1mut_A129 MUTT, nucleoside triphosphate pyrophosphohydrolase 98.79
1ktg_A138 Diadenosine tetraphosphate hydrolase; nudix, AMP, 98.74
3gwy_A140 Putative CTP pyrophosphohydrolase; structural geno 98.73
3exq_A161 Nudix family hydrolase; protein structure initiati 98.73
3r03_A144 Nudix hydrolase; structural genomics, PSI2, protei 98.71
1f3y_A165 Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase 98.69
2o1c_A150 DATP pyrophosphohydrolase; nudix NTP hydrolase NTP 98.67
2rrk_A140 ORF135, CTP pyrophosphohydrolase; NMR {Escherichia 98.66
3hhj_A158 Mutator MUTT protein; niaid, ssgcid, decode, UW, S 98.66
2b06_A155 MUTT/nudix family protein; structural genomics, P 98.64
3gg6_A156 Nudix motif 18, nucleoside diphosphate-linked moie 98.63
3eds_A153 MUTT/nudix family protein; MUT/nudix protein, prot 98.62
3ees_A153 Probable pyrophosphohydrolase; nudix, RNA pyrophos 98.62
2pbt_A134 AP4A hydrolase; nudix protein, diadenosine polypho 98.6
3q93_A176 7,8-dihydro-8-oxoguanine triphosphatase; structura 98.58
3shd_A153 Phosphatase NUDJ; nudix fold, nudix motif, hydrola 98.58
4dyw_A157 MUTT/nudix family protein; structural genomics, ni 98.57
3u53_A155 BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; 98.55
2b0v_A153 Nudix hydrolase; structural genomics, PSI, protein 98.55
2pqv_A154 MUTT/nudix family protein; structu genomics, PSI-2 98.55
1rya_A160 GDP-mannose mannosyl hydrolase; GDP-glucose, nudix 98.55
3f6a_A159 Hydrolase, nudix family; protein structure initiat 98.53
2jvb_A146 Protein PSU1, mRNA-decapping enzyme subunit 2; DCP 98.53
3e57_A211 Uncharacterized protein TM1382; structural genomic 98.49
2fb1_A 226 Conserved hypothetical protein; structural genomic 98.49
2azw_A148 MUTT/nudix family protein; MUTT/nudix ,enterococcu 98.48
2fvv_A194 Diphosphoinositol polyphosphate phosphohydrolase 1 98.48
3gz5_A 240 MUTT/nudix family protein; DNA binding protein, nu 98.48
1vcd_A126 NDX1; nudix protein, diadenosine polyphosphate, AP 98.48
3id9_A171 MUTT/nudix family protein; hydrolase, protein stru 98.48
2yyh_A139 MUTT domain, 8-OXO-DGTPase domain; nudix family pr 98.47
3h95_A199 Nucleoside diphosphate-linked moiety X motif 6; NU 98.45
2yvp_A182 NDX2, MUTT/nudix family protein; nudix protein, AD 98.42
3i7u_A134 AP4A hydrolase; nudix protein, diadenosine polypho 98.4
2fml_A 273 MUTT/nudix family protein; structural genomics, PS 98.4
3fcm_A197 Hydrolase, nudix family; protein structure initiat 98.4
3f13_A163 Putative nudix hydrolase family member; structural 98.38
2kdv_A164 RNA pyrophosphohydrolase; nudix family, magnesium, 98.37
3o8s_A206 Nudix hydrolase, ADP-ribose pyrophosphatase; struc 98.36
1k2e_A156 Nudix homolog; nudix/MUTT-like fold, mixed alpha/b 98.34
1v8y_A170 ADP-ribose pyrophosphatase; nudix motif, loop-heli 98.34
3fk9_A188 Mutator MUTT protein; structural genomics, hydrola 98.33
3cng_A189 Nudix hydrolase; structural genomics, APC7497, PSI 98.29
1u20_A212 U8 snoRNA-binding protein X29; modified nudix hydr 98.29
1x51_A155 A/G-specific adenine DNA glycosylase; nudix domain 98.28
1g0s_A209 Hypothetical 23.7 kDa protein in ICC-TOLC intergen 98.27
2qjt_B352 Nicotinamide-nucleotide adenylyltransferase; two i 98.26
1vhz_A198 ADP compounds hydrolase NUDE; structural genomics; 98.24
2a6t_A271 SPAC19A8.12; alpha/beta/alpha, RNA binding protein 98.23
3q1p_A205 Phosphohydrolase (MUTT/nudix family protein); asym 98.23
2qjo_A341 Bifunctional NMN adenylyltransferase/nudix hydrol; 98.23
2w4e_A145 MUTT/nudix family protein; ADP-ribose pyrophosphat 98.19
3qsj_A 232 Nudix hydrolase; structural genomics, PSI-biology, 98.11
1vk6_A269 NADH pyrophosphatase; 1790429, structural genomics 98.1
1mk1_A207 ADPR pyrophosphatase; nudix hydrolase, adprase, ad 98.07
2dsc_A212 ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP 98.05
3fsp_A369 A/G-specific adenine glycosylase; protein-DNA comp 98.02
1q33_A292 Pyrophosphatase, ADP-ribose pyrophosphatase; nudix 98.0
3o6z_A191 GDP-mannose pyrophosphatase NUDK; nudix, hydrolase 97.95
3q91_A218 Uridine diphosphate glucose pyrophosphatase; struc 97.85
3fjy_A 364 Probable MUTT1 protein; dimer, protein structure i 97.81
2xsq_A217 U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp 97.64
3kvh_A214 Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R 97.1
3bho_A208 Cleavage and polyadenylation specificity factor su 96.27
3rh7_A321 Hypothetical oxidoreductase; FMN-binding split bar 87.85
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Back     alignment and structure
Probab=100.00  E-value=2.6e-53  Score=403.32  Aligned_cols=205  Identities=35%  Similarity=0.660  Sum_probs=189.5

Q ss_pred             HHHHHHHHHhcCCCCCCCCeEeEEECCEEEEeecHHHHHHHhcCCCeEEeeCCCCCcccceEEeccCCCCHHHHHHHHHH
Q 021094           93 RGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGE  172 (317)
Q Consensus        93 ~~~l~~I~~cN~~~~~~~~~~PF~i~g~~vGyI~p~~~~~L~~~~~vF~~~~~~~~~~g~~V~L~p~l~t~e~RT~al~~  172 (317)
                      |+|+++|++||+|  .++.|+||+++|++||||+|.+++.|.++|++|.++.       +.|+|++.++++++||+++++
T Consensus         3 m~~l~~i~~~~~~--~~~~~~~f~~~g~~~G~i~~~~~~~l~~~~~~~~~~~-------~~v~l~~~~~~~~~rt~~~~~   73 (300)
T 3dup_A            3 LSFLKHVQDCNTH--DLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTR-------DAVLLSASLRTPQSRTRAVAD   73 (300)
T ss_dssp             CCHHHHHHHTTCC--CCTTEEEEEETTEEEEEEEHHHHHHHTTCTTTEEECS-------SEEEECTTCCSHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCC--ChhhcEEEEECCEEEEeECHHHHHHHhcCCCceEeeC-------CEEEEecCCCCHHHHHHHHHH
Confidence            6899999999999  5788999999999999999999999999999998765       689999999999999999999


Q ss_pred             HHHHHHHcCCCCCccCCeeEeeeCCCCceeEEEecccCCcCCccceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCccc
Q 021094          173 VIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDI  252 (317)
Q Consensus       173 v~~~Lr~~g~i~Gwr~E~~~V~~~~g~~~l~~ieRaa~~~fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~  252 (317)
                      +++.|+++|+++|||||+|+||+.+|+++++.+||+++++||+.++|||+|+|+.++++.+|||||||++|++||||||+
T Consensus        74 ~~~~~~~~g~~~gwr~E~~~V~~~~~~~~~~~~eR~~~~~~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~  153 (300)
T 3dup_A           74 VVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDN  153 (300)
T ss_dssp             HHHHHHHTTSSCCCCSCEEEECSSTTSCCCEEEEGGGTGGGTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEE
T ss_pred             HHHHHHHcCCCCccccccEEeecCCCCeeeEEEEhhhccccceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCcccc
Confidence            99999999999999999999999998899999999999999999999999999986556699999999999999999999


Q ss_pred             ccccCCCCCCCHHHHHHHHhhhhhCCCccccccc-----eEEEEecCCCccccccccceeeeceEEEEe
Q 021094          253 LAGGGLPHGIACGENIIKECEEEAGIPRSISNRY-----TSFTELDQWELFPIRTLMGLVTKEMLYFVT  316 (317)
Q Consensus       253 ~vAGgv~aGEs~~ea~~RE~~EEAGL~~~l~~~~-----~SY~~~~~~~~~p~~~~~glv~pe~~yv~~  316 (317)
                      +||||+.+||++.+|++||++||+||+.++++..     ++|.+..+.         | +++|++|||+
T Consensus       154 svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~~~---------G-~~~E~~~vy~  212 (300)
T 3dup_A          154 MVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPA---------G-IKPDTLFLYD  212 (300)
T ss_dssp             SEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETT---------E-EEEEEEEEEE
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEecCC---------C-eEEEEEEEEE
Confidence            9999999999999999999999999998776532     267665542         3 8999999997
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens} Back     alignment and structure
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A* Back     alignment and structure
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Back     alignment and structure
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Back     alignment and structure
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Back     alignment and structure
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Back     alignment and structure
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Back     alignment and structure
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Back     alignment and structure
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Back     alignment and structure
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Back     alignment and structure
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Back     alignment and structure
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Back     alignment and structure
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Back     alignment and structure
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0 Back     alignment and structure
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Back     alignment and structure
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0 Back     alignment and structure
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Back     alignment and structure
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Back     alignment and structure
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Back     alignment and structure
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Back     alignment and structure
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Back     alignment and structure
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Back     alignment and structure
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Back     alignment and structure
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Back     alignment and structure
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Back     alignment and structure
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Back     alignment and structure
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A* Back     alignment and structure
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Back     alignment and structure
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Back     alignment and structure
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Back     alignment and structure
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Back     alignment and structure
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima} Back     alignment and structure
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Back     alignment and structure
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Back     alignment and structure
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Back     alignment and structure
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Back     alignment and structure
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Back     alignment and structure
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Back     alignment and structure
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Back     alignment and structure
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Back     alignment and structure
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Back     alignment and structure
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A* Back     alignment and structure
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Back     alignment and structure
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Back     alignment and structure
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Back     alignment and structure
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Back     alignment and structure
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Back     alignment and structure
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Back     alignment and structure
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Back     alignment and structure
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Back     alignment and structure
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Back     alignment and structure
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* Back     alignment and structure
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3 Back     alignment and structure
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Back     alignment and structure
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Back     alignment and structure
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Back     alignment and structure
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Back     alignment and structure
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Back     alignment and structure
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Back     alignment and structure
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Back     alignment and structure
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Back     alignment and structure
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Back     alignment and structure
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Back     alignment and structure
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A Back     alignment and structure
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens} Back     alignment and structure
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Back     alignment and structure
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A Back     alignment and structure
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens} Back     alignment and structure
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A Back     alignment and structure
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 317
d1hzta_153 d.113.1.2 (A:) Isopentenyl diphosphate isomerase { 4e-04
d2fkba1161 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc 0.002
>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIP 279
           + +  L + +R+  K  +PG+      G    G +  + +I+ C  E G+ 
Sbjct: 11  NAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVE 61
>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
d2o5fa1162 Hypothetical protein DR0079 {Deinococcus radiodura 99.83
d2fkba1161 Hypothetical protein YfcD {Escherichia coli [TaxId 99.82
d1hzta_153 Isopentenyl diphosphate isomerase {Escherichia col 99.67
d1puna_129 Nucleoside triphosphate pyrophosphorylase (MutT) { 99.0
d1sjya_158 Hypothetical protein DR1025 {Deinococcus radiodura 98.88
d1ryaa_160 GDP-mannose mannosyl hydrolase NudD {Escherichia c 98.86
d2b06a1155 Hypothetical protein SP1235 (spr1115) {Streptococc 98.73
d1jkna_165 Diadenosine tetraphosphate hydrolase (Ap4A hydrola 98.7
d1ktga_137 Diadenosine tetraphosphate hydrolase (Ap4A hydrola 98.67
d2fb1a2147 Hypothetical protein BT0354, N-terminal domain {Ba 98.66
d1nqza_187 Coenzyme A pyrophosphatase {Deinococcus radioduran 98.65
d1irya_156 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum 98.6
d1vcda1126 AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 98.54
d2fvva1135 Diphosphoinositol polyphosphate phosphohydrolase { 98.54
d1vk6a2131 NADH pyrophosphatase {Escherichia coli [TaxId: 562 98.53
d2b0va1146 Hypothetical protein NE0184 {Nitrosomonas europaea 98.51
d1k2ea_152 Hypothetical protein PAE3301 {Archaeon Pyrobaculum 98.41
d2a6ta2151 mRNA decapping enzyme Dcp2p catalytic domain {Schi 98.28
d2fmla2202 Hypothetical protein EF2700, N-terminal domain {En 98.25
d2azwa1147 Hypothetical protein EF1141 {Enterococcus faecalis 98.25
d1rrqa2127 Adenine glycosylase MutY, C-terminal domain {Bacil 98.12
d1xsba_153 Diadenosine tetraphosphate hydrolase (Ap4A hydrola 98.09
d1u20a1196 U8 snorna-binding protein x29 {African clawed frog 97.8
d1v8ya_158 ADP-ribose pyrophosphatase {Thermus thermophilus [ 97.61
d1vhza_186 ADP compounds hydrolase NudE {Escherichia coli [Ta 97.41
d1mqea_202 ADP-ribose pyrophosphatase {Mycobacterium tubercul 97.38
d1g0sa_209 ADP-ribose pyrophosphatase {Escherichia coli [TaxI 97.32
d1q33a_292 NUDT9 (mitochondrial ADP-ribose pyrophosphatase) { 96.8
d1viua_189 ADP-ribose pyrophosphatase homologue YffH {Escheri 96.37
d1x51a1142 A/G-specific adenine DNA glycosylase {Human (Homo 95.34
>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.83  E-value=6.8e-21  Score=160.76  Aligned_cols=93  Identities=23%  Similarity=0.249  Sum_probs=77.7

Q ss_pred             CeeEeeeCCCCceeEEEecccCCcCCccceeEEEEEEEEeCCceEEEEeecCCCCCCCCCCcccccccCCCCCCCHHHHH
Q 021094          189 ELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENI  268 (317)
Q Consensus       189 E~~~V~~~~g~~~l~~ieRaa~~~fGl~~~gVHlngyv~~dg~~~lwV~rRS~~K~t~PG~wD~~vAGgv~aGEs~~ea~  268 (317)
                      |.++|+|+++ ++++.++|..++..|+.+++||+.+++   +++++||+||+.+|..|||+||+.+||++.+|||+.+|+
T Consensus         1 E~~d~vd~~~-~~~g~~~r~~~~~~~~~~~~v~~~v~~---~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa   76 (162)
T d2o5fa1           1 ERLDLVNERD-EVVGQILRTDPALRWERVRVVNAFLRN---SQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAF   76 (162)
T ss_dssp             CEEEEECTTS-CEEEEEETTCTTCCGGGSEEEEEEEEC---TTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHH
T ss_pred             CcEEEECCCC-CEEEEEEHHHHhhCCCeEEEEEEEEEc---CCCCEEEEEeccCccccccccccccCCcccCCCChhhhh
Confidence            8899999985 678999999999999999999987664   345799999999999999999999999999999999999


Q ss_pred             HHHhhhhhCCCcccccc
Q 021094          269 IKECEEEAGIPRSISNR  285 (317)
Q Consensus       269 ~RE~~EEAGL~~~l~~~  285 (317)
                      +||++||+||+.+....
T Consensus        77 ~REl~EE~Gl~~~~~~~   93 (162)
T d2o5fa1          77 RREAREELNVEIDALSW   93 (162)
T ss_dssp             HHHHHHHHCCCGGGSEE
T ss_pred             hhhhhheeCcceeeEEE
Confidence            99999999998776553
>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Back     information, alignment and structure
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Back     information, alignment and structure
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure