Citrus Sinensis ID: 021101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MAYYAALTSFPYQSQKRFCFSRIRASSSSSAATGRFDLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVSRRTTTLRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPLSQDQQQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHcccccccccccccHHHHcHccccccccccccccccHHHHHHHHHHHHHHHHHHccHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccEEccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mayyaaltsfpyqsqkrfcfsrirasssssaatgrfdLKTLESAIAKKDSNAVKEALDQLSevgwakrwssqpyvsrrtTTLRELTLLGiknaenlaipsvrndAAFLFTVVGITGFLGVlagqlpgdwgfftpyLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAeglqydkvvgqsadLFSLQRfinrtkpplsqdqqQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA
Flexible Loop (DISEMBL)
mayyaaltsfpyqsqKRFCFSRIRasssssaatgrfdLKTLESAIAKKDSNAVKEALDQlsevgwakrwssqpyvsrrttTLRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTkpplsqdqqqNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA
Low Complexity Region (SEG)
MAYYAALTSFPYQSQKRFCFSRIRasssssaaTGRFDLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVSrrtttlreltllGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFllayllglpilgySLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPLSQDQQQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA
Disordered region (IsUnstruct)
**YYAALTSFPYQSQKRFCFSRI*********************************LDQLSEVGWAKRWSSQPYVSRRTTTLRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINR***********NLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAI****
Disordered Region (DISOPRED)
**Y****TSFPYQSQKRFCFS**************************KDSNAVKEALDQLSEVGWAKRWSSQPYVSRRTTTLRELTLLGI**********VRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLE*******L*AKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPL*****QNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENA*
Disordered Region (DISEMBL)
MAYYAALTSFPYQSQKRFCFSRI********ATGRFDLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVSRRTTTLRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPLSQDQQQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA
Disordered Region (DISPRO)
MAYYAALTSFPYQSQKRFCFSRIRASSSSSAATGRFDLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVSRRTTTLRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPLSQDQQQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENA*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYYAALTSFPYQSQKRFCFSRIRASSSSSAATGRFDLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVSRRTTTLRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPLSQDQQQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
225438565	323	PREDICTED: uncharacterized protein LOC10	0.936	0.919	0.86	1e-146
224083801	321	predicted protein [Populus trichocarpa]	0.921	0.909	0.868	1e-146
356512746	330	PREDICTED: uncharacterized protein LOC10	0.971	0.933	0.823	1e-144
388511020	330	unknown [Lotus japonicus]	0.974	0.936	0.792	1e-142
388500492	330	unknown [Lotus japonicus]	0.974	0.936	0.786	1e-141
356525531	328	PREDICTED: uncharacterized protein LOC10	0.974	0.942	0.828	1e-141
58531976	325	OSJNBb0003B01.9 [Oryza sativa Japonica G	0.886	0.864	0.839	1e-139
242077362	315	hypothetical protein SORBIDRAFT_06g03024	0.886	0.892	0.850	1e-139
226498890	315	hypothetical protein [Zea mays] gi|19470	0.886	0.892	0.839	1e-137
195624212	315	hypothetical protein [Zea mays]	0.886	0.892	0.836	1e-137

>gi|225438565|ref|XP_002276081.1| PREDICTED: uncharacterized protein LOC100264638 [Vitis vinifera] gi|296082500|emb|CBI21505.3| unnamed protein product [Vitis vinifera]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/300 (86%), Positives = 272/300 (90%), Gaps = 3/300 (1%)

Query: 19  CFSRIRA--SSSSSAATGRFDLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVS 76
           CF   R     SSSAA G  DL TL+SAI  KDSNAVKEALDQL EVGWAK+WSSQPYVS
Sbjct: 25  CFRNTRKWRIRSSSAAPG-VDLNTLQSAIDMKDSNAVKEALDQLREVGWAKKWSSQPYVS 83

Query: 77  RRTTTLRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYL 136
           RR T+LRELT LG+KNAENLAIPSVRNDAAFLFTVVG TGFLGVLAGQLPGDWGFF PYL
Sbjct: 84  RRMTSLRELTTLGMKNAENLAIPSVRNDAAFLFTVVGTTGFLGVLAGQLPGDWGFFVPYL 143

Query: 137 IGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSL 196
           IGSISL+VLA+GS SPGLLQ AI GFSSFFPDYQER+ARHEAAHFL+AYLLGLPILGYSL
Sbjct: 144 IGSISLIVLAIGSISPGLLQVAIGGFSSFFPDYQERIARHEAAHFLVAYLLGLPILGYSL 203

Query: 197 DIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQ 256
           DIGKE+VNLIDERLEKLIYSGQLD KELDRLAVVAMAGLAAEGLQYDKVVGQSADLF+LQ
Sbjct: 204 DIGKEHVNLIDERLEKLIYSGQLDTKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFTLQ 263

Query: 257 RFINRTKPPLSQDQQQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENA 316
           RFINR+KP LS+DQQQNLTRWAVLFA +LIKNNKAIHEALM AMSKK T+LECIEAIE A
Sbjct: 264 RFINRSKPQLSKDQQQNLTRWAVLFAGSLIKNNKAIHEALMTAMSKKGTVLECIEAIEKA 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083801|ref|XP_002307128.1| predicted protein [Populus trichocarpa] gi|222856577|gb|EEE94124.1| predicted protein [Populus trichocarpa]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 257/296 (86%), Positives = 275/296 (92%), Gaps = 4/296 (1%)

Query: 22  RIRASSSSSAATGRFDLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVSRRTTT 81
           +IRASS   AA G  DLKTLESA+AKKDSNAVKEALDQL EVGWAKRWSSQPYVSRRTT+
Sbjct: 30  QIRASS---AAPG-VDLKTLESALAKKDSNAVKEALDQLREVGWAKRWSSQPYVSRRTTS 85

Query: 82  LRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSIS 141
           LRELT LGIKNAENLAIPSVRNDAAFLFTVVG TGFLGVLAGQLPGDWGFF PYLIGSIS
Sbjct: 86  LRELTSLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGVLAGQLPGDWGFFVPYLIGSIS 145

Query: 142 LVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKE 201
           LVVLAVGS SPGLLQAAI GFS+ FPDYQER+ARHEAAHFL+ YL+GLPIL YSLDIGKE
Sbjct: 146 LVVLAVGSISPGLLQAAISGFSAVFPDYQERIARHEAAHFLIGYLIGLPILDYSLDIGKE 205

Query: 202 NVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINR 261
           +VNLIDE+LEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLF+LQRFINR
Sbjct: 206 HVNLIDEKLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFTLQRFINR 265

Query: 262 TKPPLSQDQQQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA 317
           +KP +S+DQQQNLTRWAVLF  +LIKNNK++HEALM AMS KAT+LECI+AIE AA
Sbjct: 266 SKPQISKDQQQNLTRWAVLFGGSLIKNNKSLHEALMTAMSNKATVLECIQAIEKAA 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512746|ref|XP_003525077.1| PREDICTED: uncharacterized protein LOC100807209 [Glycine max]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/312 (82%), Positives = 280/312 (89%), Gaps = 4/312 (1%)

Query: 9   SFPYQSQKRFCFSRIRASSS---SSAATGRFDLKTLESAIAKKDSNAVKEALDQLSEVGW 65
           +F YQ  + F  +  + ++S   SSAA G  DL TLE AI+KKDS+AVKEAL+QLSEVGW
Sbjct: 20  NFHYQHLRCFKINLPKWTTSTRASSAAPG-VDLNTLEFAISKKDSDAVKEALNQLSEVGW 78

Query: 66  AKRWSSQPYVSRRTTTLRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQL 125
           AK+WSSQPYVS RTT+LRELT LGIKN+ENLAIPSVRNDAAFLFTVVG TGFL VLAGQL
Sbjct: 79  AKKWSSQPYVSCRTTSLRELTSLGIKNSENLAIPSVRNDAAFLFTVVGTTGFLAVLAGQL 138

Query: 126 PGDWGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAY 185
           PGDWGFF PYLIGSISLVVLAVGS SPGLLQAAI  FS+ FPDYQER+ARHEAAHFL+AY
Sbjct: 139 PGDWGFFVPYLIGSISLVVLAVGSISPGLLQAAIGSFSTLFPDYQERIARHEAAHFLIAY 198

Query: 186 LLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKV 245
           LLGLPI  YSLDIGKE+VNLIDERLEKLIYSGQLDAKELDRLAVV+MAGLAAEGL YDKV
Sbjct: 199 LLGLPIFDYSLDIGKEHVNLIDERLEKLIYSGQLDAKELDRLAVVSMAGLAAEGLTYDKV 258

Query: 246 VGQSADLFSLQRFINRTKPPLSQDQQQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKAT 305
           VGQSADLFSLQRFINRTKPPLS+DQQQNLTRWAVLFAA+L+KNNK  HEALMAAM+KKA+
Sbjct: 259 VGQSADLFSLQRFINRTKPPLSKDQQQNLTRWAVLFAASLLKNNKVTHEALMAAMTKKAS 318

Query: 306 ILECIEAIENAA 317
           +LECI AIENAA
Sbjct: 319 VLECIRAIENAA 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511020|gb|AFK43576.1| unknown [Lotus japonicus]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 278/309 (89%)

Query: 9   SFPYQSQKRFCFSRIRASSSSSAATGRFDLKTLESAIAKKDSNAVKEALDQLSEVGWAKR 68
           +F Y  Q+ F  +  + ++ +S+A    +L TLESAIAKKDSNAVKEALDQLSE GWAK+
Sbjct: 15  NFHYHHQRCFKINLPKWTTRASSAAPGVELNTLESAIAKKDSNAVKEALDQLSEGGWAKK 74

Query: 69  WSSQPYVSRRTTTLRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGD 128
           W SQPYVSRRTT+LRELT LGIKNAENLAIPSVRNDAAFLFTVVG TGFLG+L GQLPGD
Sbjct: 75  WGSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGILTGQLPGD 134

Query: 129 WGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLG 188
           WGFF PYLIGSISLVVLAVGS SPGLLQAAI  FS+ FPDYQER+ARHEAAHFL+AYLLG
Sbjct: 135 WGFFVPYLIGSISLVVLAVGSISPGLLQAAIGSFSTVFPDYQERIARHEAAHFLIAYLLG 194

Query: 189 LPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQ 248
           +PILGYSLDIGKE+VNLID+RLEKLIYSGQLDAKE+DRLAVV+MAGLAAEGL YDKV+GQ
Sbjct: 195 VPILGYSLDIGKEHVNLIDQRLEKLIYSGQLDAKEIDRLAVVSMAGLAAEGLIYDKVIGQ 254

Query: 249 SADLFSLQRFINRTKPPLSQDQQQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILE 308
           SADLF+LQRFINRTKP LS+DQQQNLTRWAV+FAA+L+KNNK  HEALMA+M+KKA+++E
Sbjct: 255 SADLFTLQRFINRTKPQLSKDQQQNLTRWAVMFAASLLKNNKESHEALMASMTKKASVVE 314

Query: 309 CIEAIENAA 317
           CI+ IE+ A
Sbjct: 315 CIQTIESVA 323

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500492|gb|AFK38312.1| unknown [Lotus japonicus]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/309 (78%), Positives = 277/309 (89%)

Query: 9   SFPYQSQKRFCFSRIRASSSSSAATGRFDLKTLESAIAKKDSNAVKEALDQLSEVGWAKR 68
           +F Y  Q+ F  +  + ++ +S+A    +L  LESAIAKKDSNAVKEALDQLSE GWAK+
Sbjct: 15  NFHYHHQRCFKINLPKWTTRASSAAPGVELNILESAIAKKDSNAVKEALDQLSEGGWAKK 74

Query: 69  WSSQPYVSRRTTTLRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGD 128
           W SQPYVSRRTT+LRELT LGIKNAENLAIPSVRNDAAFLFTVVG TGFLG+L GQLPGD
Sbjct: 75  WGSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGILTGQLPGD 134

Query: 129 WGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLG 188
           WGFF PYLIGSISLVVLAVGS SPGLLQAAI  FS+ FPDYQER+ARHEAAHFL++YLLG
Sbjct: 135 WGFFVPYLIGSISLVVLAVGSISPGLLQAAIGSFSTVFPDYQERIARHEAAHFLISYLLG 194

Query: 189 LPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQ 248
           +PILGYSLDIGKE+VNLID+RLEKLIYSGQLDAKE+DRLAVV+MAGLAAEGL YDKV+GQ
Sbjct: 195 VPILGYSLDIGKEHVNLIDQRLEKLIYSGQLDAKEIDRLAVVSMAGLAAEGLIYDKVIGQ 254

Query: 249 SADLFSLQRFINRTKPPLSQDQQQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILE 308
           SADLF+LQRFINRTKP LS+DQQQNLTRWAV+FAA+L+KNNK  HEALMA+M+KKA+++E
Sbjct: 255 SADLFTLQRFINRTKPQLSKDQQQNLTRWAVMFAASLLKNNKESHEALMASMTKKASVVE 314

Query: 309 CIEAIENAA 317
           CI+ IE+ A
Sbjct: 315 CIQTIESVA 323

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525531|ref|XP_003531378.1| PREDICTED: uncharacterized protein LOC100306288 [Glycine max]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 256/309 (82%), Positives = 281/309 (90%)

Query: 9   SFPYQSQKRFCFSRIRASSSSSAATGRFDLKTLESAIAKKDSNAVKEALDQLSEVGWAKR 68
           +F YQ Q+ F  +  + ++ +S+A    DL TLESAI+KKDS+AVKEAL+QLSEVGWAK+
Sbjct: 20  NFHYQHQRCFKINLPKWTTRASSAAPGVDLNTLESAISKKDSDAVKEALNQLSEVGWAKK 79

Query: 69  WSSQPYVSRRTTTLRELTLLGIKNAENLAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGD 128
           WSSQPYVSRRTT+LRELT LGIKNAENLAIPSVRNDAAFLFTVVG TGFLGVLAGQLPGD
Sbjct: 80  WSSQPYVSRRTTSLRELTSLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGVLAGQLPGD 139

Query: 129 WGFFTPYLIGSISLVVLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLLAYLLG 188
           WGFF PYLIGSISLVVLAVGS SPGLLQAAI  FS+ FPDYQER+ARHEAAHFL+AYLLG
Sbjct: 140 WGFFVPYLIGSISLVVLAVGSISPGLLQAAIGSFSTLFPDYQERIARHEAAHFLIAYLLG 199

Query: 189 LPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQ 248
           LPI  YSLDIGKE+VNLIDERLEKLIYSGQLDAKELDRLAVV+MAGLAAEGL YDKVVGQ
Sbjct: 200 LPIFDYSLDIGKEHVNLIDERLEKLIYSGQLDAKELDRLAVVSMAGLAAEGLTYDKVVGQ 259

Query: 249 SADLFSLQRFINRTKPPLSQDQQQNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILE 308
           SADLFSLQRFINRTKPPLS+DQQQNLTRWAVLFAA+++KNNK  HEALMAAM+KKA++LE
Sbjct: 260 SADLFSLQRFINRTKPPLSKDQQQNLTRWAVLFAASILKNNKVTHEALMAAMAKKASVLE 319

Query: 309 CIEAIENAA 317
           CI  IENAA
Sbjct: 320 CIRVIENAA 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58531976|emb|CAE03618.3| OSJNBb0003B01.9 [Oryza sativa Japonica Group] gi|116310870|emb|CAH67811.1| OSIGBa0138H21-OSIGBa0138E01.2 [Oryza sativa Indica Group] gi|125549916|gb|EAY95738.1| hypothetical protein OsI_17606 [Oryza sativa Indica Group]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/281 (83%), Positives = 266/281 (94%)

Query: 37  DLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVSRRTTTLRELTLLGIKNAENL 96
           DLK L++AI KKDS  VK+A+DQL E+GWAKRWSSQPYVSRRTT+LRELT LGIKNAENL
Sbjct: 45  DLKALQAAIDKKDSEEVKQAMDQLKELGWAKRWSSQPYVSRRTTSLRELTTLGIKNAENL 104

Query: 97  AIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQ 156
           AIPSVRNDAAFLFTVVG TGFLGVLAGQLPGDWGFF PYLIGSISL+VLA+GS SPGLLQ
Sbjct: 105 AIPSVRNDAAFLFTVVGSTGFLGVLAGQLPGDWGFFVPYLIGSISLIVLAIGSISPGLLQ 164

Query: 157 AAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYS 216
           AAI  FS+ FPDYQER+ARHEAAHFL+AYL+GLPILGYSLDIGKE+VNLID++L+KLIYS
Sbjct: 165 AAIGAFSTVFPDYQERIARHEAAHFLVAYLIGLPILGYSLDIGKEHVNLIDDQLQKLIYS 224

Query: 217 GQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPLSQDQQQNLTR 276
           GQLD KE+DRLAVV+MAGLAAEGL+YDKVVGQSADLF+LQRFINRTKPPL++DQQQNLTR
Sbjct: 225 GQLDQKEIDRLAVVSMAGLAAEGLEYDKVVGQSADLFTLQRFINRTKPPLTKDQQQNLTR 284

Query: 277 WAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA 317
           WAVLF+A+L+KNNKA HEALM+AMS+KA++L CIEAIENA+
Sbjct: 285 WAVLFSASLLKNNKAAHEALMSAMSQKASVLGCIEAIENAS 325

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242077362|ref|XP_002448617.1| hypothetical protein SORBIDRAFT_06g030240 [Sorghum bicolor] gi|241939800|gb|EES12945.1| hypothetical protein SORBIDRAFT_06g030240 [Sorghum bicolor]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/281 (85%), Positives = 264/281 (93%)

Query: 37  DLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVSRRTTTLRELTLLGIKNAENL 96
           DLK L++AI KK S+ VKEALDQL E+GWAKRWSSQPYVSRRTT+LRELT LGIKNAENL
Sbjct: 35  DLKGLQAAIDKKSSDDVKEALDQLRELGWAKRWSSQPYVSRRTTSLRELTTLGIKNAENL 94

Query: 97  AIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQ 156
           AIPSVRNDAAFLFTVVG TGFL VLAGQLPGDWGFF PYLIGSISL+VLAVGS +PGLLQ
Sbjct: 95  AIPSVRNDAAFLFTVVGTTGFLAVLAGQLPGDWGFFVPYLIGSISLIVLAVGSVAPGLLQ 154

Query: 157 AAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYS 216
           AAI  FS+ FPDYQER+ARHEAAHFL+AYL+GLPILGYSLDIGKE+VNLIDE+L+KLIYS
Sbjct: 155 AAIGAFSTVFPDYQERIARHEAAHFLVAYLIGLPILGYSLDIGKEHVNLIDEQLQKLIYS 214

Query: 217 GQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPLSQDQQQNLTR 276
           G+LD KELDRLAVV+MAGLAAEGLQYDKVVGQSADLF+LQRFINRTKP LS+DQQQNLTR
Sbjct: 215 GKLDGKELDRLAVVSMAGLAAEGLQYDKVVGQSADLFTLQRFINRTKPQLSKDQQQNLTR 274

Query: 277 WAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA 317
           WAVLFAA+L+KNNKA HEALM+AMS+KA++L CIEAIENA+
Sbjct: 275 WAVLFAASLLKNNKAAHEALMSAMSQKASVLGCIEAIENAS 315

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226498890|ref|NP_001140871.1| hypothetical protein [Zea mays] gi|194701534|gb|ACF84851.1| unknown [Zea mays] gi|414585199|tpg|DAA35770.1| TPA: hypothetical protein ZEAMMB73_590939 [Zea mays]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/281 (83%), Positives = 262/281 (93%)

Query: 37  DLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVSRRTTTLRELTLLGIKNAENL 96
           DLK L++AI KK S+ V++ALDQL E GWAKRW SQPYVSRRTT+LRELT LGIKNAENL
Sbjct: 35  DLKALQAAIDKKSSDDVRQALDQLRESGWAKRWGSQPYVSRRTTSLRELTTLGIKNAENL 94

Query: 97  AIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQ 156
           AIPSVRNDAAFLFTVVG TGFL VLAGQLPGDWGFF PYLIGSISL+VLAVGS +PGLLQ
Sbjct: 95  AIPSVRNDAAFLFTVVGTTGFLAVLAGQLPGDWGFFVPYLIGSISLIVLAVGSVAPGLLQ 154

Query: 157 AAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYS 216
           AAI  FS+ FPDYQER+ARHEAAHFL+AYL+GLPILGYSLDIGKE+VNLIDE+L+KLIYS
Sbjct: 155 AAIGAFSTVFPDYQERIARHEAAHFLVAYLIGLPILGYSLDIGKEHVNLIDEQLQKLIYS 214

Query: 217 GQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPLSQDQQQNLTR 276
           GQLD KELDRLAVV+MAGLAAEGL+YDKVVGQSADLF+LQRFINRTKP LS+DQQQNLTR
Sbjct: 215 GQLDGKELDRLAVVSMAGLAAEGLEYDKVVGQSADLFTLQRFINRTKPQLSKDQQQNLTR 274

Query: 277 WAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA 317
           WAVLFAA+L+KNNKA HEALM+AMS+KA++L CIEAIENA+
Sbjct: 275 WAVLFAASLLKNNKAAHEALMSAMSQKASVLGCIEAIENAS 315

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195624212|gb|ACG33936.1| hypothetical protein [Zea mays]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/281 (83%), Positives = 262/281 (93%)

Query: 37  DLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVSRRTTTLRELTLLGIKNAENL 96
           DLK L++AI KK S+ V++ALDQL E GWAKRW SQPYVSRRTT+LRELT LGIKNAENL
Sbjct: 35  DLKALQAAIDKKSSDDVRQALDQLRESGWAKRWGSQPYVSRRTTSLRELTTLGIKNAENL 94

Query: 97  AIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLLQ 156
           AIPSVRNDAAFLFTVVG TGFL VLAGQLPGDWGFF PYLIGSISL+VLAVGS +PGLLQ
Sbjct: 95  AIPSVRNDAAFLFTVVGTTGFLAVLAGQLPGDWGFFVPYLIGSISLIVLAVGSVAPGLLQ 154

Query: 157 AAIQGFSSFFPDYQERVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYS 216
           AAI  FS+ FPDYQER+ARHEAAHFL+AYL+GLPILGYSLDIGKE+VNLIDE+L+KLIYS
Sbjct: 155 AAIGAFSTVFPDYQERIARHEAAHFLVAYLIGLPILGYSLDIGKEHVNLIDEQLQKLIYS 214

Query: 217 GQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPLSQDQQQNLTR 276
           GQLD KELDRLAVV+MAGLAAEGL+YDKVVGQSADLF+LQRF+NRTKP LS+DQQQNLTR
Sbjct: 215 GQLDGKELDRLAVVSMAGLAAEGLEYDKVVGQSADLFTLQRFMNRTKPQLSKDQQQNLTR 274

Query: 277 WAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA 317
           WAVLFAA+L+KNNKA HEALM+AMS+KA++L CIEAIENA+
Sbjct: 275 WAVLFAASLLKNNKAAHEALMSAMSQKASVLGCIEAIENAS 315

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2052474	332	AT2G21960 [Arabidopsis thalian	0.889	0.849	0.755	3.8e-110
TAIR|locus:2011861	389	AT1G56180 "AT1G56180" [Arabido	0.482	0.393	0.310	7.8e-11
TAIR|locus:2181221	341	AT5G27290 [Arabidopsis thalian	0.473	0.439	0.290	9.2e-08

TAIR|locus:2052474 AT2G21960 [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 213/282 (75%), Positives = 238/282 (84%)

Query:    36 FDLKTLESAIAKKDSNAVKEALDQLSEVGWAKRWSSQPYVSXXXXXXXXXXXXGIKNAEN 95
             FDL +LESAI KKDSN VKEALD+LSE GWAK+WSSQPY+S            GIKNAE 
Sbjct:    51 FDLSSLESAINKKDSNGVKEALDKLSEEGWAKKWSSQPYLSRRTTSLRELTTLGIKNAET 110

Query:    96 LAIPSVRNDAAFLFTVVGITGFLGVLAGQLPGDWGFFTPYLIGSISLVVLAVGSTSPGLL 155
             LAIPSVRNDAAFLFTVVG TGF+ VLAGQLPGDWGFF PYL+GSISLVVLAVGS SPGLL
Sbjct:   111 LAIPSVRNDAAFLFTVVGSTGFIAVLAGQLPGDWGFFVPYLVGSISLVVLAVGSVSPGLL 170

Query:   156 QAAIQGFSSFFPDYQERVARHEAAHFXXXXXXXXXXXXXSLDIGKENVNLIDERLEKLIY 215
             QAAI GFS+FFPDYQER+A HEAAHF             SLDIGKE+VNLIDERL KLIY
Sbjct:   171 QAAISGFSTFFPDYQERIAAHEAAHFLVAYLIGLPILGYSLDIGKEHVNLIDERLAKLIY 230

Query:   216 SGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPLSQDQQQNLT 275
             SG+LD+KELDRLA VAMAGLAAEGL+YDKV+GQSADLFSLQRFINR++P +S +QQQNLT
Sbjct:   231 SGKLDSKELDRLAAVAMAGLAAEGLKYDKVIGQSADLFSLQRFINRSQPKISNEQQQNLT 290

Query:   276 RWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENAA 317
             RWAVL++A+L+KNNK IHEALMAAMSK A++LECI+ IE A+
Sbjct:   291 RWAVLYSASLLKNNKTIHEALMAAMSKNASVLECIQTIETAS 332

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2011861 AT1G56180 "AT1G56180" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 7.8e-11, P = 7.8e-11
 Identities = 51/164 (31%), Positives = 76/164 (46%)

Query:   163 SSFFPDYQERVARHEAAHFXXXXXXXXXXXXXSLDI---------GKENVNLIDERLEKL 213
             S ++P ++ R+  HEA H               LD          G+      D+++E  
Sbjct:   222 SCYWPPHKRRIVVHEAGHLLVAYLMGCPIRGVILDPVVAMQMGVQGQAGTQFWDQKMESE 281

Query:   214 IYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFIN-RTKPPLSQDQQQ 272
             I  G+L     DR ++V  AG+AAE L Y +  G   D  +L R I+   +PPLS  Q  
Sbjct:   282 IAEGRLSGSSFDRYSMVLFAGIAAEALVYGEAEGGENDE-NLFRSISVLLEPPLSVAQMS 340

Query:   273 NLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENA 316
             N  RW+VL +  L+K +KA H A + A+   + +   I  IE A
Sbjct:   341 NQARWSVLQSYNLLKWHKAAHRAAVEALQVGSPLSIVIRRIEEA 384

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2181221 AT5G27290 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 9.2e-08, P = 9.2e-08
 Identities = 48/165 (29%), Positives = 80/165 (48%)

Query:   164 SFFPDYQERVARHEAAHFXXXXXXXXX---XXXXSLD-IGKE-NVNL------ID-ERLE 211
             +F   Y  RV +HEA HF                SL+ + KE ++N+      +D E LE
Sbjct:   174 TFSQRYHNRVVQHEAGHFLVAYLVGILPRGYTLSSLEALQKEGSLNIQAGSAFVDYEFLE 233

Query:   212 KLIYSGQLDAKELDRLAVVAMAGLAAEGLQYDKVVGQSADLFSLQRFINRTKPPLSQDQQ 271
             + + SG++ A  L+R + +A+AG+A E L Y    G   D+  L   +       +Q + 
Sbjct:   234 E-VNSGKVSATMLNRFSCIALAGVATEYLLYGYAEGGLDDISKLDGLVKSLG--FTQKKA 290

Query:   272 QNLTRWAVLFAATLIKNNKAIHEALMAAMSKKATILECIEAIENA 316
              +  RW+VL    L++ ++     L  AMSK  ++  CI+ IE++
Sbjct:   291 DSQVRWSVLNTILLLRRHEIARSKLAQAMSKGESVGSCIQIIEDS 335


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      317       284   0.00085  115 3  11 22  0.49    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.93u 0.21s 21.14t   Elapsed:  00:00:01
  Total cpu time:  20.93u 0.21s 21.14t   Elapsed:  00:00:01
  Start:  Sat May 11 01:28:30 2013   End:  Sat May 11 01:28:31 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
PF01434	213	Peptidase_M41: Peptidase family M41 This is family	99.95
CHL00176	638	ftsH cell division protein; Validated	99.93
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.92
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.92
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.91
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.9
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.87
CHL00206	2281	ycf2 Ycf2; Provisional	98.25
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.84
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	97.65
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.52
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	97.26
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	96.78
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	96.78
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	96.63
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	96.39
PF13398	200	Peptidase_M50B: Peptidase M50B-like	96.36
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	96.0
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	95.42
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	93.39
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	88.99
PF00413	154	Peptidase_M10: Matrixin This Prosite motif covers	80.34

>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification

Probab=99.95  E-value=2.4e-27  Score=215.74  Aligned_cols=140  Identities=26%  Similarity=0.287  Sum_probs=110.5

Q ss_pred             CCChhhhHHHHHHHhhHHHHHHHhC--CCCceEEeec-Cc--ccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHH
Q 021101          164 SFFPDYQERVARHEAAHFLLAYLLG--LPILGYSLDI-GK--ENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAE  238 (317)
Q Consensus       164 ~ls~~~r~RIA~HEAGHaLvAylLg--~PV~kvsI~p-G~--ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE  238 (317)
                      .+++++|+++|||||||++|+++++  .||.++||.| |.  |++.+.+++ +.    ...+++++.+.++|+|||||||
T Consensus        22 ~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~-~~----~~~t~~~l~~~i~v~LaGraAE   96 (213)
T PF01434_consen   22 KLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDE-DR----YIRTRSYLEDRICVLLAGRAAE   96 (213)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHT-T-----SS-BHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccch-hc----ccccHHHHHhhHHHHHHHHHHH
Confidence            3589999999999999999999998  5999999998 32  345554432 21    1369999999999999999999


Q ss_pred             HhhcC--C-ccchhhHHHHHHHHHHH----hCCCC---------------------------CH-------HHHHHHHHH
Q 021101          239 GLQYD--K-VVGQSADLFSLQRFINR----TKPPL---------------------------SQ-------DQQQNLTRW  277 (317)
Q Consensus       239 ~lvfG--~-atGa~~Dl~~lt~i~~~----lG~~~---------------------------s~-------~e~~~l~r~  277 (317)
                      +++||  + ++|+++|+++++++++.    +|++-                           ++       .+++++++.
T Consensus        97 e~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ev~~lL~~  176 (213)
T PF01434_consen   97 ELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSEETRALIDREVRKLLEE  176 (213)
T ss_dssp             HHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-HHHHHHHHHHHHHHHHH
T ss_pred             HhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcchhhHHHHHHHHHHHHHH
Confidence            99999  5 58999999999888763    55530                           11       246778899


Q ss_pred             HHHHHHHHHHHcHHHHHHHHHHHHHhchHHH
Q 021101          278 AVLFAATLIKNNKAIHEALMAAMSKKATILE  308 (317)
Q Consensus       278 A~~~A~~LL~~~r~~leaLaeaLle~esl~e  308 (317)
                      ||.+|+++|++||+.+++|+++|+++++|+.
T Consensus       177 a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~  207 (213)
T PF01434_consen  177 AYARAKEILEENREALEALAEALLEKETLSG  207 (213)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHSEEEH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhCeeCH
Confidence            9999999999999999999999999997743

; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....

>CHL00176 ftsH cell division protein; Validated

Probab=99.93  E-value=2.7e-25  Score=230.83  Aligned_cols=147  Identities=20%  Similarity=0.262  Sum_probs=121.8

Q ss_pred             CChhhhHHHHHHHhhHHHHHHHhC--CCCceEEeec-Cc-ccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHh
Q 021101          165 FFPDYQERVARHEAAHFLLAYLLG--LPILGYSLDI-GK-ENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGL  240 (317)
Q Consensus       165 ls~~~r~RIA~HEAGHaLvAylLg--~PV~kvsI~p-G~-ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~l  240 (317)
                      .++++|++||||||||++++++++  .||+++||.| |+ .|+++..|+.++.    .+++.++...++++|||||||++
T Consensus       433 ~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~----~~t~~~l~~~i~~~LgGraAE~~  508 (638)
T CHL00176        433 EDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQS----LVSRSQILARIVGALGGRAAEEV  508 (638)
T ss_pred             ccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccc----cccHHHHHHHHHHHhhhHHHHHH
Confidence            468899999999999999999997  6999999998 43 3655555543332    47999999999999999999999


Q ss_pred             hcCC---ccchhhHHHHHHHHHH----HhCCC--------------------------CCH-------HHHHHHHHHHHH
Q 021101          241 QYDK---VVGQSADLFSLQRFIN----RTKPP--------------------------LSQ-------DQQQNLTRWAVL  280 (317)
Q Consensus       241 vfG~---atGa~~Dl~~lt~i~~----~lG~~--------------------------~s~-------~e~~~l~r~A~~  280 (317)
                      +||+   ++|++||++++|++++    ++||+                          +++       .+++++++.||.
T Consensus       509 ~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~  588 (638)
T CHL00176        509 VFGSTEVTTGASNDLQQVTNLARQMVTRFGMSSIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQ  588 (638)
T ss_pred             hcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCcCCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            9994   4899999999987765    56664                          111       367889999999


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHhchHH--HHHHHHHh
Q 021101          281 FAATLIKNNKAIHEALMAAMSKKATIL--ECIEAIEN  315 (317)
Q Consensus       281 ~A~~LL~~~r~~leaLaeaLle~esl~--eC~~~Ie~  315 (317)
                      +|+++|++||+.+++||++|+++|||+  |+.++++.
T Consensus       589 ~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~  625 (638)
T CHL00176        589 YAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNS  625 (638)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhh
Confidence            999999999999999999999999774  56777764

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=5.2e-26  Score=229.48  Aligned_cols=139  Identities=21%  Similarity=0.218  Sum_probs=119.0

Q ss_pred             CChhhhHHHHHHHhhHHHHHHHhC--CCCceEEeec-Ccc-cceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHh
Q 021101          165 FFPDYQERVARHEAAHFLLAYLLG--LPILGYSLDI-GKE-NVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGL  240 (317)
Q Consensus       165 ls~~~r~RIA~HEAGHaLvAylLg--~PV~kvsI~p-G~g-gv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~l  240 (317)
                      ++++-|+.+||||+||+|||++..  .|+||.||.| |.. |.+...|+.|+.    .+|+.++..++-|+||||+||+|
T Consensus       552 i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~----~~Tk~q~LA~lDV~MGGRvAEEL  627 (752)
T KOG0734|consen  552 IDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRY----SITKAQLLARLDVCMGGRVAEEL  627 (752)
T ss_pred             cChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchh----hHHHHHHHHHHHHhhcchHHHHH
Confidence            478889999999999999999998  5999999998 654 666666654443    47999999999999999999999


Q ss_pred             hcCC---ccchhhHHHHHHHH----HHHhCCC-------C---------C-------HHHHHHHHHHHHHHHHHHHHHcH
Q 021101          241 QYDK---VVGQSADLFSLQRF----INRTKPP-------L---------S-------QDQQQNLTRWAVLFAATLIKNNK  290 (317)
Q Consensus       241 vfG~---atGa~~Dl~~lt~i----~~~lG~~-------~---------s-------~~e~~~l~r~A~~~A~~LL~~~r  290 (317)
                      +||.   .+|+++|++|+|++    ++.+||+       +         +       +.|++++++.+|++|+.||+.|.
T Consensus       628 IfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~  707 (752)
T KOG0734|consen  628 IFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHK  707 (752)
T ss_pred             hccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9995   47999999998765    5567876       1         0       24788999999999999999999


Q ss_pred             HHHHHHHHHHHHhchHH
Q 021101          291 AIHEALMAAMSKKATIL  307 (317)
Q Consensus       291 ~~leaLaeaLle~esl~  307 (317)
                      ..+++||++|++.|||+
T Consensus       708 kEl~~LA~ALleYETL~  724 (752)
T KOG0734|consen  708 KELHALAEALLEYETLD  724 (752)
T ss_pred             HHHHHHHHHHHHhhcCC
Confidence            99999999999999885

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.92  E-value=4.4e-25  Score=229.33  Aligned_cols=146  Identities=20%  Similarity=0.221  Sum_probs=120.0

Q ss_pred             CChhhhHHHHHHHhhHHHHHHHhC--CCCceEEeec-Ccc-cceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHh
Q 021101          165 FFPDYQERVARHEAAHFLLAYLLG--LPILGYSLDI-GKE-NVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGL  240 (317)
Q Consensus       165 ls~~~r~RIA~HEAGHaLvAylLg--~PV~kvsI~p-G~g-gv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~l  240 (317)
                      +++++|+++||||+||++|+++++  .||+++||.| |.+ |+++..|+.+..    ..|++++.+.++|+|||||||++
T Consensus       403 ~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~----~~~~~~l~~~i~~~lgGraAE~~  478 (644)
T PRK10733        403 MTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAI----SASRQKLESQISTLYGGRLAEEI  478 (644)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccc----cccHHHHHHHHHHHHhhHHHHHH
Confidence            578899999999999999999997  6999999998 433 555554542222    36899999999999999999999


Q ss_pred             hcCC---ccchhhHHHHHHHHHH----HhCCC--------------------------CC-------HHHHHHHHHHHHH
Q 021101          241 QYDK---VVGQSADLFSLQRFIN----RTKPP--------------------------LS-------QDQQQNLTRWAVL  280 (317)
Q Consensus       241 vfG~---atGa~~Dl~~lt~i~~----~lG~~--------------------------~s-------~~e~~~l~r~A~~  280 (317)
                      +||.   ++|++||++++|+|++    ++||+                          ++       +.++++++++||.
T Consensus       479 ~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~  558 (644)
T PRK10733        479 IYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYN  558 (644)
T ss_pred             HhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            9984   4899999999988765    56665                          11       1467889999999


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHhchHH--HHHHHHH
Q 021101          281 FAATLIKNNKAIHEALMAAMSKKATIL--ECIEAIE  314 (317)
Q Consensus       281 ~A~~LL~~~r~~leaLaeaLle~esl~--eC~~~Ie  314 (317)
                      +|+++|++|++.+++||++|+++|||+  |..+++.
T Consensus       559 ~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~  594 (644)
T PRK10733        559 RARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMA  594 (644)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHh
Confidence            999999999999999999999999875  4555554

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.91  E-value=3.6e-24  Score=215.49  Aligned_cols=141  Identities=22%  Similarity=0.199  Sum_probs=116.8

Q ss_pred             CCChhhhHHHHHHHhhHHHHHHHhC--CCCceEEeec-Cc-ccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHH
Q 021101          164 SFFPDYQERVARHEAAHFLLAYLLG--LPILGYSLDI-GK-ENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEG  239 (317)
Q Consensus       164 ~ls~~~r~RIA~HEAGHaLvAylLg--~PV~kvsI~p-G~-ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~  239 (317)
                      .+++++|+++|||||||++++++++  .||+++||.| |. +|+++..|..+    .+..++++++++++|+|||||||+
T Consensus       305 ~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~----~~~~t~~~l~~~i~v~LaGraAE~  380 (495)
T TIGR01241       305 VISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEED----KYLYTKSQLLAQIAVLLGGRAAEE  380 (495)
T ss_pred             cccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCccc----cccCCHHHHHHHHHHHhhHHHHHH
Confidence            3578999999999999999999996  6999999998 43 34443333221    235799999999999999999999


Q ss_pred             hhcCCc-cchhhHHHHHHHHHH----HhCCCC--------------------------C-------HHHHHHHHHHHHHH
Q 021101          240 LQYDKV-VGQSADLFSLQRFIN----RTKPPL--------------------------S-------QDQQQNLTRWAVLF  281 (317)
Q Consensus       240 lvfG~a-tGa~~Dl~~lt~i~~----~lG~~~--------------------------s-------~~e~~~l~r~A~~~  281 (317)
                      ++||++ +|+++|++++|++++    ++|+.-                          +       +.++++++++||.+
T Consensus       381 ~~~G~~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~r  460 (495)
T TIGR01241       381 IIFGEVTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKR  460 (495)
T ss_pred             HHhcCCCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            999986 799999999988865    456531                          1       24577889999999


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHhchHHH
Q 021101          282 AATLIKNNKAIHEALMAAMSKKATILE  308 (317)
Q Consensus       282 A~~LL~~~r~~leaLaeaLle~esl~e  308 (317)
                      |+++|++|++++++||++|+++++|++
T Consensus       461 a~~lL~~~~~~l~~la~~Ll~~e~L~~  487 (495)
T TIGR01241       461 AKQILTENRDELELLAKALLEKETITR  487 (495)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHcCeeCH
Confidence            999999999999999999999998763

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=5.4e-24  Score=218.62  Aligned_cols=139  Identities=25%  Similarity=0.244  Sum_probs=120.0

Q ss_pred             CChhhhHHHHHHHhhHHHHHHHhCC--CCceEEeec-Ccc-cceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHh
Q 021101          165 FFPDYQERVARHEAAHFLLAYLLGL--PILGYSLDI-GKE-NVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGL  240 (317)
Q Consensus       165 ls~~~r~RIA~HEAGHaLvAylLg~--PV~kvsI~p-G~g-gv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~l  240 (317)
                      +++++|+.+|||||||++++++++.  ||||+||+| |+. |+++..|+.|+    +.+|++++...++++||||+||++
T Consensus       401 ise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~----~l~sk~~l~~~i~~~lgGRaAEel  476 (596)
T COG0465         401 ISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDK----YLMSKEELLDRIDVLLGGRAAEEL  476 (596)
T ss_pred             cChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCcccc----ccccHHHHHHHHHHHhCCcHhhhh
Confidence            7889999999999999999999984  999999998 643 77777776433    458999999999999999999999


Q ss_pred             hcC-Cc-cchhhHHHHHHHHHH----HhCCC------------------------CCH-------HHHHHHHHHHHHHHH
Q 021101          241 QYD-KV-VGQSADLFSLQRFIN----RTKPP------------------------LSQ-------DQQQNLTRWAVLFAA  283 (317)
Q Consensus       241 vfG-~a-tGa~~Dl~~lt~i~~----~lG~~------------------------~s~-------~e~~~l~r~A~~~A~  283 (317)
                      +|| +. +|++||++++|.+++    ++|++                        +++       .++++++..+|.+++
T Consensus       477 ~~g~e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~  556 (596)
T COG0465         477 IFGYEITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAK  556 (596)
T ss_pred             hhcccccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999 75 899999999877654    56766                        221       357889999999999


Q ss_pred             HHHHHcHHHHHHHHHHHHHhchHH
Q 021101          284 TLIKNNKAIHEALMAAMSKKATIL  307 (317)
Q Consensus       284 ~LL~~~r~~leaLaeaLle~esl~  307 (317)
                      .+|.+|++.++.++++|+++||++
T Consensus       557 ~il~~~~~~l~~~~~~Lle~Eti~  580 (596)
T COG0465         557 ELLNENKDALETLAEMLLEKETID  580 (596)
T ss_pred             HHHHHhHHHHHHHHHHHHHhhccC
Confidence            999999999999999999999965

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.7e-22  Score=209.05  Aligned_cols=147  Identities=22%  Similarity=0.240  Sum_probs=123.2

Q ss_pred             CCChhhhHHHHHHHhhHHHHHHHhC--CCCceEEeecCcc-cceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHh
Q 021101          164 SFFPDYQERVARHEAAHFLLAYLLG--LPILGYSLDIGKE-NVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGL  240 (317)
Q Consensus       164 ~ls~~~r~RIA~HEAGHaLvAylLg--~PV~kvsI~pG~g-gv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~l  240 (317)
                      .+++++++.+|||||||++++++++  +||.++||+||++ |+.+..|..+     +.+++++|..++||+|||||||++
T Consensus       563 ~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiPGqalG~a~~~P~~~-----~l~sk~ql~~rm~m~LGGRaAEev  637 (774)
T KOG0731|consen  563 VLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIPGQALGYAQYLPTDD-----YLLSKEQLFDRMVMALGGRAAEEV  637 (774)
T ss_pred             hcCHhhhhhhhhhhccchhhhccccccCcceeEEeccCCccceEEECCccc-----ccccHHHHHHHHHHHhCcchhhhe
Confidence            4588999999999999999998888  5999999999865 5555555422     458999999999999999999999


Q ss_pred             hcC-C-ccchhhHHHHHHHHHH----HhCCC---------------------CC-------HHHHHHHHHHHHHHHHHHH
Q 021101          241 QYD-K-VVGQSADLFSLQRFIN----RTKPP---------------------LS-------QDQQQNLTRWAVLFAATLI  286 (317)
Q Consensus       241 vfG-~-atGa~~Dl~~lt~i~~----~lG~~---------------------~s-------~~e~~~l~r~A~~~A~~LL  286 (317)
                      +|| + ++|++||++++|+|++    ++|++                     ++       +.++++++..||++|.++|
T Consensus       638 ~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id~ev~~lv~~ay~~~~~ll  717 (774)
T KOG0731|consen  638 VFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLIDTEVRRLVQKAYERTKELL  717 (774)
T ss_pred             ecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            997 4 4899999999999876    45554                     11       1357788999999999999


Q ss_pred             HHcHHHHHHHHHHHHHhc--hHHHHHHHHHh
Q 021101          287 KNNKAIHEALMAAMSKKA--TILECIEAIEN  315 (317)
Q Consensus       287 ~~~r~~leaLaeaLle~e--sl~eC~~~Ie~  315 (317)
                      ++|++.++.+++.|+++|  +-+|+++++..
T Consensus       718 ~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~  748 (774)
T KOG0731|consen  718 RTNRDKLDKIAEVLLEKEVLTGEEIIALLGE  748 (774)
T ss_pred             HHhHHHHHHHHHHHHHhhhccHHHHHHHhcc
Confidence            999999999999999998  55788887753

>CHL00206 ycf2 Ycf2; Provisional

Probab=98.25  E-value=1.3e-06  Score=99.85  Aligned_cols=84  Identities=14%  Similarity=0.004  Sum_probs=60.7

Q ss_pred             HHHHHHHhhHHHHHHHhC--CCCceEEee--c-----Ccc-cceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHh
Q 021101          171 ERVARHEAAHFLLAYLLG--LPILGYSLD--I-----GKE-NVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGL  240 (317)
Q Consensus       171 ~RIA~HEAGHaLvAylLg--~PV~kvsI~--p-----G~g-gv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~l  240 (317)
                      ++|++||+|||+|+.++.  +||+++||.  |     |.+ |.++..|..      ..+++.++..++.++|||+|||.+
T Consensus      1891 ~~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~yl~~wyle~~------~~mkk~tiL~~Il~cLAGraAedl 1964 (2281)
T CHL00206       1891 HGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELG------TSMKKLTILLYLLSCSAGSVAQDL 1964 (2281)
T ss_pred             hhhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcccceeEeecCCc------ccCCHHHHHHHHHHHhhhhhhhhh
Confidence            358999999999999986  699999984  3     222 444444421      257899999999999999999999


Q ss_pred             hcCCc---------cch-hhHHHHHHHHHH
Q 021101          241 QYDKV---------VGQ-SADLFSLQRFIN  260 (317)
Q Consensus       241 vfG~a---------tGa-~~Dl~~lt~i~~  260 (317)
                      .|...         -|- .+|..-+-.++.
T Consensus      1965 wf~~~~~~~n~It~yg~vEnD~~La~glLe 1994 (2281)
T CHL00206       1965 WSLPGPDEKNGITSYGLVENDSDLVHGLLE 1994 (2281)
T ss_pred             ccCcchhhhcCcccccchhhhhHHhHhHHH
Confidence            99631         122 556555555544

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.84  E-value=1.3e-05  Score=80.80  Aligned_cols=69  Identities=25%  Similarity=0.330  Sum_probs=47.1

Q ss_pred             HHHHHHhhHHHHHHHhCCCCceEEee---------------------cCcccceecchHHHH---hhhcCCCCHHHHHHH
Q 021101          172 RVARHEAAHFLLAYLLGLPILGYSLD---------------------IGKENVNLIDERLEK---LIYSGQLDAKELDRL  227 (317)
Q Consensus       172 RIA~HEAGHaLvAylLg~PV~kvsI~---------------------pG~ggv~f~~~e~e~---~~~~g~~s~~~L~r~  227 (317)
                      .|..||.||||+|.++|+.|.++||+                     |-+|+|.+.+++.++   .-....+..+...++
T Consensus        17 li~vHElGHfl~Ar~~gv~V~~FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~~~~~f~~k~~~~R   96 (449)
T PRK10779         17 LITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPELRHHAFNNKTVGQR   96 (449)
T ss_pred             HHHHHHHHHHHHHHHcCCeeeEEEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhhhhhhhccCCHHHh
Confidence            47899999999999999999999886                     223456655432110   000112455556666


Q ss_pred             HHHHchHHHHHHh
Q 021101          228 AVVAMAGLAAEGL  240 (317)
Q Consensus       228 ~~VlLAGrAAE~l  240 (317)
                      +.|++||..+.-+
T Consensus        97 ~~i~~AGp~~N~i  109 (449)
T PRK10779         97 AAIIAAGPIANFI  109 (449)
T ss_pred             hhhhhhhHHHHHH
Confidence            7899999999853

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=97.65  E-value=2.7e-05  Score=70.24  Aligned_cols=70  Identities=24%  Similarity=0.284  Sum_probs=44.1

Q ss_pred             HHHHHHhhHHHHHHHhCCCCceEEee--------------------cCcccceecchHHHHh----hhcCCCCHHHHHHH
Q 021101          172 RVARHEAAHFLLAYLLGLPILGYSLD--------------------IGKENVNLIDERLEKL----IYSGQLDAKELDRL  227 (317)
Q Consensus       172 RIA~HEAGHaLvAylLg~PV~kvsI~--------------------pG~ggv~f~~~e~e~~----~~~g~~s~~~L~r~  227 (317)
                      -|..||.||+++|..+|.+|++++|+                    |-+|++++.+++.++.    .+...+.++.-.+.
T Consensus        11 ~v~iHElGH~~~Ar~~Gv~v~~f~iGfGp~l~~~~~~~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~f~~~~~~~r   90 (182)
T cd06163          11 LIFVHELGHFLVAKLFGVKVEEFSIGFGPKLFSFKKGETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRSFNSKPVWQR   90 (182)
T ss_pred             HHHHHHHHHHHHHHHcCCeeeEeeeecCceeeeeecCCeEEEEEEEEeccEEEecCCCcccccccccchHHHccCCcchh
Confidence            37899999999999999999997653                    4334566554321110    00001222123345


Q ss_pred             HHHHchHHHHHHhh
Q 021101          228 AVVAMAGLAAEGLQ  241 (317)
Q Consensus       228 ~~VlLAGrAAE~lv  241 (317)
                      +.|.+||.+++-+.
T Consensus        91 i~V~lAGP~~Nlil  104 (182)
T cd06163          91 ILIVFAGPLANFLL  104 (182)
T ss_pred             hhhhhhHHHHHHHH
Confidence            67999999999764

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>TIGR00054 RIP metalloprotease RseP

Probab=97.52  E-value=7.8e-05  Score=74.72  Aligned_cols=69  Identities=25%  Similarity=0.295  Sum_probs=45.3

Q ss_pred             HHHHHHhhHHHHHHHhCCCCceEEee--------------------cCcccceec--chHHHH---hhhcCCCCHHHHHH
Q 021101          172 RVARHEAAHFLLAYLLGLPILGYSLD--------------------IGKENVNLI--DERLEK---LIYSGQLDAKELDR  226 (317)
Q Consensus       172 RIA~HEAGHaLvAylLg~PV~kvsI~--------------------pG~ggv~f~--~~e~e~---~~~~g~~s~~~L~r  226 (317)
                      .|..||.||||+|.++|..|.++||+                    |-+|++.+.  +++.+.   .-+...+..+...+
T Consensus        16 ~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~plGg~v~~~g~~~~~~~~~~~~~~~~f~~~~~~~   95 (420)
T TIGR00054        16 LIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPLGGYVKMKGLDKEMEVKPPETDGDLFNNKSVFQ   95 (420)
T ss_pred             HHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecCcceEeeccCCcccccCCcchhhhhhccCCHHH
Confidence            47899999999999999999987765                    334566663  211110   00011244455566


Q ss_pred             HHHHHchHHHHHHh
Q 021101          227 LAVVAMAGLAAEGL  240 (317)
Q Consensus       227 ~~~VlLAGrAAE~l  240 (317)
                      ++.|.+||.++.-+
T Consensus        96 r~~i~~aGp~~N~~  109 (420)
T TIGR00054        96 KAIIIFAGPLANFI  109 (420)
T ss_pred             HHHhhhcccHHHHH
Confidence            66799999988854

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=97.26  E-value=0.0023  Score=59.49  Aligned_cols=60  Identities=25%  Similarity=0.186  Sum_probs=43.9

Q ss_pred             HHHHHHhhHHHHHHHhCCCCceEEeecCcccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHhhcC
Q 021101          172 RVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYD  243 (317)
Q Consensus       172 RIA~HEAGHaLvAylLg~PV~kvsI~pG~ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~lvfG  243 (317)
                      -+..||.||+++|+.+|.||+++++.|-.|.+.+.+..         .++   .+...|.+||.++.-+...
T Consensus        55 ~v~iHElgH~~~A~~~G~~v~~i~l~p~Gg~~~~~~~~---------~~~---~~~~~IalAGPl~Nllla~  114 (227)
T cd06164          55 SVLLHELGHSLVARRYGIPVRSITLFLFGGVARLEREP---------ETP---GQEFVIAIAGPLVSLVLAL  114 (227)
T ss_pred             HHHHHHHHHHHHHHHcCCeECeEEEEeeeEEEEecCCC---------CCH---HHHhhhhhhHHHHHHHHHH
Confidence            47899999999999999999999999843334433221         122   2346799999999987644

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.78  E-value=0.0011  Score=58.75  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=18.5

Q ss_pred             HHHHHhhHHHHHHHhCCCCceEEeec
Q 021101          173 VARHEAAHFLLAYLLGLPILGYSLDI  198 (317)
Q Consensus       173 IA~HEAGHaLvAylLg~PV~kvsI~p  198 (317)
                      +..||.||+++|+..|+++.++++.+
T Consensus        10 i~~HE~gH~~~a~~~G~~~~~~~~~~   35 (192)
T PF02163_consen   10 IVLHELGHALAARLYGDKVPRFEGGF   35 (192)
T ss_dssp             HHHHHHHHHHHHHTTT--B--EEE--
T ss_pred             cccccccccccccccccccccccccc
Confidence            67899999999999999999997653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=96.78  E-value=0.0013  Score=60.13  Aligned_cols=60  Identities=25%  Similarity=0.184  Sum_probs=44.3

Q ss_pred             HHHHHHhhHHHHHHHhCCCCceEEeecCcccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHhhcC
Q 021101          172 RVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYD  243 (317)
Q Consensus       172 RIA~HEAGHaLvAylLg~PV~kvsI~pG~ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~lvfG  243 (317)
                      -+..||.||+++|+.+|.|++++++.|-+|.+...+..          . . -.+.+.|.+||..++-++..
T Consensus        40 ~v~iHElgH~~~A~~~G~~v~~i~l~p~Gg~~~~~~~~----------~-~-~~~~~lIalAGPl~n~~la~   99 (208)
T cd06161          40 SVLLHELGHALVARRYGIRVRSITLLPFGGVAELEEEP----------E-T-PKEEFVIALAGPLVSLLLAG   99 (208)
T ss_pred             HHHHHHHHHHHHHHHcCCCccceEEEeeeeeeeeccCC----------C-C-hhHheeeeeehHHHHHHHHH
Confidence            47899999999999999999999999854444442210          1 1 22345799999999987755

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=96.63  E-value=0.001  Score=58.51  Aligned_cols=64  Identities=27%  Similarity=0.143  Sum_probs=41.3

Q ss_pred             HHHHHhhHHHHHHHhCCCCceEEee-----------------cCcccceecchHHHHhhhcCCCCHHHHHHHHHHHchHH
Q 021101          173 VARHEAAHFLLAYLLGLPILGYSLD-----------------IGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGL  235 (317)
Q Consensus       173 IA~HEAGHaLvAylLg~PV~kvsI~-----------------pG~ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGr  235 (317)
                      +..||.||+++|+..|+++.+.++.                 |-.|.+...+...+.       .+..-.+...|.+||.
T Consensus        11 i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~~~~-------~~~~~~~~~~i~laGP   83 (180)
T cd05709          11 VTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGENPRA-------FKKPRWQRLLVALAGP   83 (180)
T ss_pred             HHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCChhh-------hccchhhhhhhhhhhH
Confidence            7889999999999999988766653                 222233333322110       0112344567999999


Q ss_pred             HHHHhhcC
Q 021101          236 AAEGLQYD  243 (317)
Q Consensus       236 AAE~lvfG  243 (317)
                      .++-+...
T Consensus        84 l~nllla~   91 (180)
T cd05709          84 LANLLLAL   91 (180)
T ss_pred             HHHHHHHH
Confidence            99987654

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=96.39  E-value=0.0031  Score=60.66  Aligned_cols=63  Identities=16%  Similarity=0.103  Sum_probs=43.0

Q ss_pred             HHHHHHhhHHHHHHHhCCCCceEEeec----CcccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHhhcC
Q 021101          172 RVARHEAAHFLLAYLLGLPILGYSLDI----GKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYD  243 (317)
Q Consensus       172 RIA~HEAGHaLvAylLg~PV~kvsI~p----G~ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~lvfG  243 (317)
                      -+..||.||+++|...|++|+++.+.+    ..|.++.++++.+      ..++.   +.+.|.+||.+++-+.-.
T Consensus       137 svvvHElgHal~A~~~gi~V~~iGl~l~~~~pGa~ve~~~e~~~------~~~~~---~~l~Ia~AGp~~NlvLa~  203 (277)
T cd06162         137 SGVVHEMGHGVAAVREQVRVNGFGIFFFIIYPGAYVDLFTDHLN------LISPV---QQLRIFCAGVWHNFVLGL  203 (277)
T ss_pred             HHHHHHHHHHHHHHHcCCeeceEEEeeeeccCeeEEeecccccc------cCChh---hhhheehhhHHHHHHHHH
Confidence            378999999999999999999998753    1234454333211      12222   345799999999987644

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=96.36  E-value=0.0039  Score=56.75  Aligned_cols=57  Identities=26%  Similarity=0.265  Sum_probs=41.1

Q ss_pred             HHHHHHhhHHHHHHHhCCCCceEEeecCcccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHhh
Q 021101          172 RVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQ  241 (317)
Q Consensus       172 RIA~HEAGHaLvAylLg~PV~kvsI~pG~ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~lv  241 (317)
                      -+..||.||++++.+.|..|+++++.|..+|++.....            ....+ ..+..||..+..+.
T Consensus        24 ~t~~HE~gHal~a~l~G~~v~~i~l~~~~~G~~~~~~~------------~~~~~-~~i~~aGyl~~~l~   80 (200)
T PF13398_consen   24 VTFVHELGHALAALLTGGRVKGIVLFPDGSGVTVSSGP------------SGIGR-FLIALAGYLGPALF   80 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCcceEEEEeCCCceEEEecC------------CCcch-hHHhcccchHHHHH
Confidence            38999999999999999999999999976665543220            01122 34677777777664

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=96.00  E-value=0.0025  Score=60.79  Aligned_cols=62  Identities=23%  Similarity=0.125  Sum_probs=41.4

Q ss_pred             HHHHHhhHHHHHHHhCCCCceEEee----cCcccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHhhcC
Q 021101          173 VARHEAAHFLLAYLLGLPILGYSLD----IGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQYD  243 (317)
Q Consensus       173 IA~HEAGHaLvAylLg~PV~kvsI~----pG~ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~lvfG  243 (317)
                      +..||.||+++|+..|++|+++.+.    |..|.++..+++   .      .+..-.+...|.+||..++-+...
T Consensus       121 v~iHElgHa~~Ar~~G~~V~~iGl~l~~ip~Gg~v~~~~~~---~------~~~~~~~~~~Ia~AGP~~Nlvla~  186 (263)
T cd06159         121 VVVHELSHGILARVEGIKVKSGGLLLLIIPPGAFVEPDEEE---L------NKADRRIRLRIFAAGVTANFVVAL  186 (263)
T ss_pred             HHHHHHHHHHHHHHcCCEECchhHHHHhhhcEEEEEecchh---h------ccCChhheeeeeeehHHHHHHHHH
Confidence            7899999999999999999987542    333445543321   1      111223456799999999966543

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=95.42  E-value=0.023  Score=51.43  Aligned_cols=58  Identities=21%  Similarity=0.052  Sum_probs=40.4

Q ss_pred             HHHHHHhhHHHHHHHhCCCCceEEeecC-----cccc-eecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHhh
Q 021101          172 RVARHEAAHFLLAYLLGLPILGYSLDIG-----KENV-NLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQ  241 (317)
Q Consensus       172 RIA~HEAGHaLvAylLg~PV~kvsI~pG-----~ggv-~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~lv  241 (317)
                      .+..||.||+++|+..|+++.+..+.|.     -|++ ...++.         .++   .+.+.|.+||.++.-+.
T Consensus        43 ~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~~~~~~~~---------~~~---~~~~~IalAGPl~nl~l  106 (183)
T cd06160          43 ILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAFIRMRSPI---------PNR---KALFDIALAGPLAGLLL  106 (183)
T ss_pred             HHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEEEEecCCC---------CCh---hHhehhhhhHHHHHHHH
Confidence            4678999999999999999999988872     2332 222111         122   24457889999988655

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=93.39  E-value=0.09  Score=47.25  Aligned_cols=26  Identities=38%  Similarity=0.529  Sum_probs=20.9

Q ss_pred             HHHHHhhHHHHHHHhCCCCce----EEeec
Q 021101          173 VARHEAAHFLLAYLLGLPILG----YSLDI  198 (317)
Q Consensus       173 IA~HEAGHaLvAylLg~PV~k----vsI~p  198 (317)
                      +..||.||+++|+..|++..+    .|+.|
T Consensus        12 i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp   41 (181)
T cd06158          12 ITLHEFAHAYVAYRLGDPTARRAGRLTLNP   41 (181)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHcCceecCc
Confidence            678999999999999987654    45544

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=88.99  E-value=0.42  Score=48.55  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=26.6

Q ss_pred             HHHHHhhHHHHHHHhCCCCceEEee-----cCcccceecc
Q 021101          173 VARHEAAHFLLAYLLGLPILGYSLD-----IGKENVNLID  207 (317)
Q Consensus       173 IA~HEAGHaLvAylLg~PV~kvsI~-----pG~ggv~f~~  207 (317)
                      ..+||-||+|+|..-|+||.++-|-     || +.|.+..
T Consensus       134 ~vvHElGHalAA~segV~vngfgIfi~aiyPg-afvdl~~  172 (484)
T KOG2921|consen  134 VVVHELGHALAAASEGVQVNGFGIFIAAIYPG-AFVDLDN  172 (484)
T ss_pred             HHHHHhhHHHHHHhcCceeeeeEEEEEEEcCc-hhhhhhh
Confidence            4689999999999999999999763     54 3455443

>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site

Probab=80.34  E-value=0.86  Score=38.35  Aligned_cols=17  Identities=35%  Similarity=0.302  Sum_probs=14.6

Q ss_pred             ChhhhHHHHHHHhhHHH
Q 021101          166 FPDYQERVARHEAAHFL  182 (317)
Q Consensus       166 s~~~r~RIA~HEAGHaL  182 (317)
                      +..+...|+.||.||+|
T Consensus       101 ~~~~~~~v~~HEiGHaL  117 (154)
T PF00413_consen  101 SGNDLQSVAIHEIGHAL  117 (154)
T ss_dssp             SSEEHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhcccccc
Confidence            56678899999999985

; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
2di4_A	238	Zinc protease, cell division protein FTSH homolog;	100.0
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.93
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.91
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	96.81

>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1

Probab=100.00  E-value=1.8e-34  Score=266.55  Aligned_cols=148  Identities=22%  Similarity=0.217  Sum_probs=119.2

Q ss_pred             CCChhhhHHHHHHHhhHHHHHHHhC--CCCceEEeec-Ccc-cceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHH
Q 021101          164 SFFPDYQERVARHEAAHFLLAYLLG--LPILGYSLDI-GKE-NVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEG  239 (317)
Q Consensus       164 ~ls~~~r~RIA~HEAGHaLvAylLg--~PV~kvsI~p-G~g-gv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~  239 (317)
                      .+++++|++||||||||||||++++  +||+||||+| |++ |+++..|+.++    ..+|+++|.+.++|+|||||||+
T Consensus        10 ~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~----~~~tk~~l~~~i~v~LgGRaAEe   85 (238)
T 2di4_A           10 TISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDK----HIYDKKDLYNKILVLLGGRAAEE   85 (238)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------C----CCCBHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccc----cccCHHHHHHHHHHHHhHHHHHH
Confidence            4699999999999999999999998  7999999998 532 55554554332    45799999999999999999999


Q ss_pred             hhc--CC-ccchhhHHHHHHHHHH----HhCCCC------------------------C-------HHHHHHHHHHHHHH
Q 021101          240 LQY--DK-VVGQSADLFSLQRFIN----RTKPPL------------------------S-------QDQQQNLTRWAVLF  281 (317)
Q Consensus       240 lvf--G~-atGa~~Dl~~lt~i~~----~lG~~~------------------------s-------~~e~~~l~r~A~~~  281 (317)
                      |+|  |+ ++|++||++++|+|++    ++||+-                        |       +.++++++++||.+
T Consensus        86 lifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il~~ay~~  165 (238)
T 2di4_A           86 VFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEK  165 (238)
T ss_dssp             HHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            999  65 5999999999987654    567651                        1       14678899999999


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHhchH--HHHHHHHHh
Q 021101          282 AATLIKNNKAIHEALMAAMSKKATI--LECIEAIEN  315 (317)
Q Consensus       282 A~~LL~~~r~~leaLaeaLle~esl--~eC~~~Ie~  315 (317)
                      |++||++|++.+++||++|+++|||  +||.++|+.
T Consensus       166 a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~  201 (238)
T 2di4_A          166 AKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKL  201 (238)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHcc
Confidence            9999999999999999999999999  999999875

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.93  E-value=2.5e-25  Score=222.58  Aligned_cols=147  Identities=19%  Similarity=0.208  Sum_probs=117.3

Q ss_pred             CCChhhhHHHHHHHhhHHHHHHHhC--CCCceEEeec-C-cc-cceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHH
Q 021101          164 SFFPDYQERVARHEAAHFLLAYLLG--LPILGYSLDI-G-KE-NVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAE  238 (317)
Q Consensus       164 ~ls~~~r~RIA~HEAGHaLvAylLg--~PV~kvsI~p-G-~g-gv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE  238 (317)
                      .+++++|++++|||+||++++++++  .|++++||.| | ++ |+++..|+.++    ..+|+++|.+.++|+|||||||
T Consensus       266 ~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~----~~~~~~~l~~~i~~~l~Gr~ae  341 (476)
T 2ce7_A          266 LISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDK----YLVSRNELLDKLTALLGGRAAE  341 (476)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------C----CSCBHHHHHHHHHHHTHHHHHH
T ss_pred             hhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccc----cccCHHHHHHHHHHHHhHHHHH
Confidence            4678899999999999999999997  6999999998 4 22 55544454332    3579999999999999999999


Q ss_pred             HhhcCCc-cchhhHHHHHHHHHH----HhCCC-------C-------------------CH-------HHHHHHHHHHHH
Q 021101          239 GLQYDKV-VGQSADLFSLQRFIN----RTKPP-------L-------------------SQ-------DQQQNLTRWAVL  280 (317)
Q Consensus       239 ~lvfG~a-tGa~~Dl~~lt~i~~----~lG~~-------~-------------------s~-------~e~~~l~r~A~~  280 (317)
                      +++||+. +|++||++++|+|++    ++||+       +                   ++       .++++++++||.
T Consensus       342 ~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~  421 (476)
T 2ce7_A          342 EVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYE  421 (476)
T ss_dssp             HHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999986 799999999988755    56665       1                   11       257789999999


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHhchH--HHHHHHHH
Q 021101          281 FAATLIKNNKAIHEALMAAMSKKATI--LECIEAIE  314 (317)
Q Consensus       281 ~A~~LL~~~r~~leaLaeaLle~esl--~eC~~~Ie  314 (317)
                      +|+++|++|++.+++||++|+++|||  +|+.++++
T Consensus       422 ~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~  457 (476)
T 2ce7_A          422 RAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILS  457 (476)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhc
Confidence            99999999999999999999999998  88888775

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.91  E-value=3e-24  Score=215.81  Aligned_cols=147  Identities=22%  Similarity=0.223  Sum_probs=123.2

Q ss_pred             CCChhhhHHHHHHHhhHHHHHHHhC--CCCceEEeec-Cc-ccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHH
Q 021101          164 SFFPDYQERVARHEAAHFLLAYLLG--LPILGYSLDI-GK-ENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEG  239 (317)
Q Consensus       164 ~ls~~~r~RIA~HEAGHaLvAylLg--~PV~kvsI~p-G~-ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~  239 (317)
                      .+++++|++++|||+||++++|+++  +||+++||.| |+ .|+++  |+.+   +...+|++++...++++|||||||+
T Consensus       281 ~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~--p~q~---~~~~~t~~~l~~~i~~~lgGr~ae~  355 (499)
T 2dhr_A          281 VLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM--PRRE---DMLHWSRKRLLDQIAVALAGRAAEE  355 (499)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH--HHHT---TCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc--cchh---hhhccCHHHHHHHHHHHhhhHhHHH
Confidence            3678899999999999999999987  6999999998 43 25655  4311   2235799998888899999999999


Q ss_pred             hhcCCc-cchhhHHHHHHHHHH----HhCCC-------C----------------CH-------HHHHHHHHHHHHHHHH
Q 021101          240 LQYDKV-VGQSADLFSLQRFIN----RTKPP-------L----------------SQ-------DQQQNLTRWAVLFAAT  284 (317)
Q Consensus       240 lvfG~a-tGa~~Dl~~lt~i~~----~lG~~-------~----------------s~-------~e~~~l~r~A~~~A~~  284 (317)
                      ++||+. +|++||++++|+|++    ++||+       +                ++       .++++++++||.+|++
T Consensus       356 ~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~  435 (499)
T 2dhr_A          356 IVFDDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKA  435 (499)
T ss_dssp             HHSCSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999986 899999999998765    46664       1                21       3678899999999999


Q ss_pred             HHHHcHHHHHHHHHHHHHhchH--HHHHHHHHh
Q 021101          285 LIKNNKAIHEALMAAMSKKATI--LECIEAIEN  315 (317)
Q Consensus       285 LL~~~r~~leaLaeaLle~esl--~eC~~~Ie~  315 (317)
                      +|++|++.+++||++|+++|||  +|+.++++.
T Consensus       436 ~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~  468 (499)
T 2dhr_A          436 LLLEKREVLERVAETLLERETLTAEEFQRVVEG  468 (499)
T ss_dssp             HHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence            9999999999999999999988  888888864

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=96.81  E-value=0.00078  Score=61.10  Aligned_cols=56  Identities=18%  Similarity=0.059  Sum_probs=41.9

Q ss_pred             HHHHHHhhHHHHHHHhCCCCceEEeecCcccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHHhh
Q 021101          172 RVARHEAAHFLLAYLLGLPILGYSLDIGKENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEGLQ  241 (317)
Q Consensus       172 RIA~HEAGHaLvAylLg~PV~kvsI~pG~ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~lv  241 (317)
                      -+..||.||+++|+..|++++++++.|-+|.+.+..           .++   .+.+.|.+||..++-+.
T Consensus        50 ~v~~HElgH~~~A~~~G~~~~~i~l~p~Gg~~~~~~-----------~~~---~~~~~ValAGPl~nl~l  105 (224)
T 3b4r_A           50 SVVLHELGHSYVAKKYGVKIEKILLLPIGGVAMMDK-----------IPK---EGELRIGIAGPLVSFII  105 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCEEECSSSCBCCCCC-----------CCS---SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccccEEEEEeeeEEEccc-----------CCc---cceeeeeeeHHHHHHHH
Confidence            467899999999999999999999998434444321           111   34457999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d2ce7a1	193	Cell division protein FtsH, C-terminal domain {The	99.96
d2di4a1	202	Cell division protein FtsH, C-terminal domain {Aqu	99.96
d1hfca_	157	Fibroblast collagenase (MMP-1) {Human (Homo sapien	84.36
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	82.86

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=3.9e-30  Score=225.21  Aligned_cols=139  Identities=18%  Similarity=0.188  Sum_probs=109.7

Q ss_pred             CChhhhHHHHHHHhhHHHHHHHhC--CCCceEEeecC---cccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHHH
Q 021101          165 FFPDYQERVARHEAAHFLLAYLLG--LPILGYSLDIG---KENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAEG  239 (317)
Q Consensus       165 ls~~~r~RIA~HEAGHaLvAylLg--~PV~kvsI~pG---~ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE~  239 (317)
                      |||++|+|||||||||++|+++++  .||.++||.|.   .+|++...|..+    ....|++++.+.++|+|||||||+
T Consensus         2 ls~~er~~vA~HEAGHAlva~~l~~~~~i~~vsI~~r~~~~~g~~~~~~~~~----~~~~t~~~l~~~i~v~LaGraAE~   77 (193)
T d2ce7a1           2 ISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEED----KYLVSRNELLDKLTALLGGRAAEE   77 (193)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC---------------------CCSCBHHHHHHHHHHHTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEecCccCCCceeecCCccc----cccCcHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999996  58999999982   235554444322    234789999999999999999999


Q ss_pred             hhcCCc-cchhhHHHHHHHHHHH----hCCC--C------------------------C-------HHHHHHHHHHHHHH
Q 021101          240 LQYDKV-VGQSADLFSLQRFINR----TKPP--L------------------------S-------QDQQQNLTRWAVLF  281 (317)
Q Consensus       240 lvfG~a-tGa~~Dl~~lt~i~~~----lG~~--~------------------------s-------~~e~~~l~r~A~~~  281 (317)
                      ++||+. +|+++|++++++++++    +|++  +                        +       +.+++++++.||.+
T Consensus        78 ~~~g~~s~Ga~~Dl~~At~lA~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~ll~~a~~~  157 (193)
T d2ce7a1          78 VVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYER  157 (193)
T ss_dssp             HHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCccCcHHHHHHHHHHHHHhhCcCCCcCceeeccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            999985 8999999999988763    5553  1                        0       13567889999999


Q ss_pred             HHHHHHHcHHHHHHHHHHHHHhchHH
Q 021101          282 AATLIKNNKAIHEALMAAMSKKATIL  307 (317)
Q Consensus       282 A~~LL~~~r~~leaLaeaLle~esl~  307 (317)
                      |+++|++|++.+++|+++|+++++|+
T Consensus       158 a~~iL~~~~~~l~~la~~Lle~e~L~  183 (193)
T d2ce7a1         158 AKEIIRKYRKQLDNIVEILLEKETIE  183 (193)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHSEEE
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCeeC
Confidence            99999999999999999999999764

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.96  E-value=3.1e-29  Score=220.65  Aligned_cols=147  Identities=21%  Similarity=0.226  Sum_probs=116.3

Q ss_pred             CCChhhhHHHHHHHhhHHHHHHHhC--CCCceEEeec-C--cccceecchHHHHhhhcCCCCHHHHHHHHHHHchHHHHH
Q 021101          164 SFFPDYQERVARHEAAHFLLAYLLG--LPILGYSLDI-G--KENVNLIDERLEKLIYSGQLDAKELDRLAVVAMAGLAAE  238 (317)
Q Consensus       164 ~ls~~~r~RIA~HEAGHaLvAylLg--~PV~kvsI~p-G--~ggv~f~~~e~e~~~~~g~~s~~~L~r~~~VlLAGrAAE  238 (317)
                      .|||++|+||||||||||+||++++  .||.++||.| |  .|++.+.++. +    ....+++++.+.++|+|||||||
T Consensus         1 ~ls~~ek~~vA~HEAGHAvva~~l~~~~~v~~vtI~prg~~~g~~~~~~~~-~----~~~~t~~~l~~~i~v~LgGraAE   75 (202)
T d2di4a1           1 TISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIE-D----KHIYDKKDLYNKILVLLGGRAAE   75 (202)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC---------------------CCCCBHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEecCCccccccccCccc-c----cchhhHHHHHHHHHHHHhhhhcc
Confidence            3799999999999999999999998  5999999998 3  2345555433 1    23579999999999999999999


Q ss_pred             HhhcCC---ccchhhHHHHHHHHHH----HhCCC------------------------CC-------HHHHHHHHHHHHH
Q 021101          239 GLQYDK---VVGQSADLFSLQRFIN----RTKPP------------------------LS-------QDQQQNLTRWAVL  280 (317)
Q Consensus       239 ~lvfG~---atGa~~Dl~~lt~i~~----~lG~~------------------------~s-------~~e~~~l~r~A~~  280 (317)
                      +++||+   ++|+++|+++++++++    ++|++                        ++       +.++++++++||.
T Consensus        76 ~i~~g~~~~~~g~~~dl~~At~~A~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~id~ev~~ll~~a~~  155 (202)
T d2di4a1          76 EVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYE  155 (202)
T ss_dssp             HHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeecCcccccCccchHHHHHHHHHHHHHhhCcccccchhhhcccccchhhhhhccccchhhHHHHHHHHHHHHHHHHHH
Confidence            999996   4899999999988765    46654                        11       1357889999999


Q ss_pred             HHHHHHHHcHHHHHHHHHHHHHhchH--HHHHHHHHh
Q 021101          281 FAATLIKNNKAIHEALMAAMSKKATI--LECIEAIEN  315 (317)
Q Consensus       281 ~A~~LL~~~r~~leaLaeaLle~esl--~eC~~~Ie~  315 (317)
                      +|+++|++|++.+++|+++|++++||  +|..++|++
T Consensus       156 ~a~~iL~~~~~~l~~la~~Lle~etL~~~ei~~il~~  192 (202)
T d2di4a1         156 KAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKL  192 (202)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHHH
Confidence            99999999999999999999999966  567777775

>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.36  E-value=0.19  Score=38.90  Aligned_cols=17  Identities=41%  Similarity=0.333  Sum_probs=14.3

Q ss_pred             ChhhhHHHHHHHhhHHH
Q 021101          166 FPDYQERVARHEAAHFL  182 (317)
Q Consensus       166 s~~~r~RIA~HEAGHaL  182 (317)
                      ...+...|+.||.||+|
T Consensus       102 ~~~~~~~v~~HEiGHaL  118 (157)
T d1hfca_         102 REYNLHRVAAHELGHSL  118 (157)
T ss_dssp             SSCBHHHHHHHHHHHHH
T ss_pred             ccchhhhhHhhhhhhhc
Confidence            45677889999999986

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.86  E-value=0.22  Score=38.59  Aligned_cols=18  Identities=33%  Similarity=0.032  Sum_probs=14.9

Q ss_pred             ChhhhHHHHHHHhhHHHH
Q 021101          166 FPDYQERVARHEAAHFLL  183 (317)
Q Consensus       166 s~~~r~RIA~HEAGHaLv  183 (317)
                      +..+.+.|+.||.||+|=
T Consensus       113 ~~~~~~~v~~HEiGHaLG  130 (169)
T d1rm8a_         113 DGNDLFLVAVHELGHALG  130 (169)
T ss_dssp             SSEEHHHHHHHHHHHHHT
T ss_pred             Ccchhhhhhhhhhhhhhc
Confidence            456678999999999974